Query 002747
Match_columns 885
No_of_seqs 314 out of 2978
Neff 11.4
Searched_HMMs 29240
Date Tue Mar 26 17:14:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002747.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1464-1468//hhsearch_pdb/002747hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3auy_A DNA double-strand break 1.0 1 1 174.8 26.8 139 18-173 1-144 (371)
2 3qks_A DNA double-strand break 1.0 1 1 174.8 15.4 179 20-212 1-187 (203)
3 1w1w_A Structural maintenance 1.0 1 1 162.4 15.6 157 19-182 1-169 (430)
4 4ad8_A DNA repair protein RECN 1.0 1 1 160.1 28.5 111 18-150 36-148 (517)
5 3kta_A Chromosome segregation 1.0 1 1 158.5 18.7 160 19-188 1-169 (182)
6 1f2t_A RAD50 ABC-ATPase; DNA d 1.0 1 1 154.9 11.8 138 20-171 1-148 (149)
7 1e69_A Chromosome segregation 1.0 1 1 148.0 14.7 138 20-173 1-146 (322)
8 3qkt_A DNA double-strand break 1.0 1 1 143.9 12.5 140 20-171 1-148 (339)
9 3qf7_A RAD50; ABC-ATPase, ATPa 1.0 1 1 129.1 22.6 144 20-174 1-153 (365)
10 2o5v_A DNA replication and rep 1.0 1 1 124.1 20.1 121 18-167 2-122 (359)
No 1
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=1.00 E-value=1 Score=174.83 Aligned_cols=139 Identities=22% Similarity=0.320 Sum_probs=107.1
Q ss_pred CCCEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEE
Q ss_conf 88056289997123334316883795589991899935799999999825877776664320021123982369999997
Q 002747 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (885)
Q Consensus 18 ~~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~ 97 (885)
|||+|.+|.|.||++|...+|+|+||+|+|+|+||||||||+|||+|+|+|.. |+....++++.|...+.|+++|.
T Consensus 1 m~M~l~~L~l~nFr~~~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~~----r~~~~~~~ir~g~~~~~V~~~f~ 76 (371)
T 3auy_A 1 MSMILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAG----SNFNYDTIITKGKKSVYVELDFE 76 (371)
T ss_dssp CCEEEEEEEEEEETTEEEEEEECCSEEEEEEECTTSSHHHHHHHHHHHHHCCC-----CCCTTTTBCTTCSEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHCCCCCCCEEEEEEEE
T ss_conf 98478699998611536659836998499999999988999999999982998----75556765118998389999999
Q ss_pred ECCCCCCCCCCCCCEEEEEEEEECCCC--EEEEECCCCCCCCCCHHHHHHHHHH-CCCCCC--CCEEEECHHHHHHHHHC
Q ss_conf 279877776557995999997508966--3999728996211308899999987-288888--99013140347676414
Q 002747 98 NRGEDAFKPEIFGDSIIIERRITESTS--TTVLKDHQGKRVASRKQELLELIDH-FNIDVE--NPCVIMSQDKSREFLHS 172 (885)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~q~~~~~~~~~ 172 (885)
.++ ..|.|.|.+..|++ .+++ ||.+++....++...+.. +|++.. .+.++++|++...++..
T Consensus 77 ~~~----------~~~~i~r~~~~g~~~~~~~~---ng~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~~~~ 143 (371)
T 3auy_A 77 VNG----------NNYKIIREYDSGRGGAKLYK---NGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSL 143 (371)
T ss_dssp ETT----------EEEEEEEEEETTEEEEEEEE---TTEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHHHHHHS
T ss_pred ECC----------EEEEEEEEECCCCCCEEEEE---CCEEECCCHHHHHHHHHHHHCCCHHHHCCEEEECCCCHHHHHHC
T ss_conf 899----------99999999768998539998---99861164789999999986959899474326617307998735
Q ss_pred C
Q ss_conf 9
Q 002747 173 G 173 (885)
Q Consensus 173 ~ 173 (885)
.
T Consensus 144 ~ 144 (371)
T 3auy_A 144 K 144 (371)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 2
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=1.00 E-value=1 Score=174.82 Aligned_cols=179 Identities=18% Similarity=0.278 Sum_probs=126.2
Q ss_pred CEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEEC
Q ss_conf 05628999712333431688379558999189993579999999982587777666432002112398236999999727
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (885)
|+|.+|.|.||++|.+.+|+|.+|+|+|+||||||||||++||.|+||+.+. .|+....++++.|...+.|.+.|.++
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~l~g~~~--~r~~~~~~~i~~~~~~~~v~l~f~~~ 78 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (203)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHTTSC--CTTCCHHHHHTSCSSCEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCCHHHHCCCCCCEEEEEEEEEC
T ss_conf 9799999988767156299818981899928999889999999999649855--65666123330689848999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEE-CC---CCEEEEECCCCC---CCCCCHHHHHHHHHHC-CCCCCCCEEEECHHHHHHHHH
Q ss_conf 987777655799599999750-89---663999728996---2113088999999872-888889901314034767641
Q 002747 100 GEDAFKPEIFGDSIIIERRIT-ES---TSTTVLKDHQGK---RVASRKQELLELIDHF-NIDVENPCVIMSQDKSREFLH 171 (885)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~---~~~~~~~~~~g~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~~~ 171 (885)
| ..|.|.|.+. .+ .+...+...+|. ....+..++...+..+ +.+.+...++++|+++..|+.
T Consensus 79 ~----------~~~~i~R~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~i~~ll~~~~f~~~~~l~Qg~~~~~l~ 148 (203)
T 3qks_A 79 G----------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILE 148 (203)
T ss_dssp T----------EEEEEEEEEECSSSCEEEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHTTEECTTHHHHHHH
T ss_pred C----------EEEEEEEEEECCCCCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHCCHHHHHEEEEECCCCHHHHHH
T ss_conf 9----------999999999768987765359997289665503477689999999973987812788995875787874
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49904489999966279999999999999999999999999
Q 002747 172 SGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLEL 212 (885)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 212 (885)
.. .++...+.....+..+....+.+.+....+...+.++
T Consensus 149 ~~--~er~~~l~~i~g~~~~~~~~~~l~~~~~~~~~~~~~l 187 (203)
T 3qks_A 149 SD--EAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEY 187 (203)
T ss_dssp CH--HHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 93--9999999999797899999999999999999999999
No 3
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=162.38 Aligned_cols=157 Identities=22% Similarity=0.349 Sum_probs=112.0
Q ss_pred CCEEEEEEEEECCCCCCE-EEEEC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEEE
Q ss_conf 805628999712333431-68837-9558999189993579999999982587777666432002112398236999999
Q 002747 19 AGTITRVRLENFMCHSSL-QIELG-EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL 96 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~~~~-~i~f~-~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~ 96 (885)
||+|++|.+.||++|+.. .++|. +++|+|+||||+|||||++||.|++++.+. ..|+....++|+.|...+.|.+.|
T Consensus 1 mm~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~-~~R~~~~~~lI~~g~~~~~~~~~~ 79 (430)
T 1w1w_A 1 MGRLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN-HLRSNILKDLIYRGVLNDENSDDY 79 (430)
T ss_dssp -CCEEEEEEESCSSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC----------CGGGSCCC----------
T ss_pred CCEEEEEEEECEEEECCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 9715899995889989940577569978999999988899999999845342434-401445899996488664025872
Q ss_pred EECCCC------CCCC---CCCCCEEEEEEEEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECHHHH
Q ss_conf 727987------7776---55799599999750-8966399972899621130889999998728888899013140347
Q 002747 97 KNRGED------AFKP---EIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKS 166 (885)
Q Consensus 97 ~~~~~~------~~~~---~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 166 (885)
.+.+.. ++.. ...+..+.+.|.+. .+.+.|++ ||+.+ +..++..++...++......+++.|+..
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~i~r~~~~~~~~~~~i---ng~~~--~~~~~~~~~~~~~i~~~~~~~~i~qg~~ 154 (430)
T 1w1w_A 80 DNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKI---DGKTV--SYKDYSIFLENENILIKAKNFLVFQGDV 154 (430)
T ss_dssp ---------CCEEEEEEEEEETTEEEEEEEEEETTSCEEEEE---TTEEE--CHHHHHHHHHHTTCCTTTCTTEECTTCT
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCEEEEE---CCEEC--CHHHHHHHHHHCCCCCCCCCEEEEHHHH
T ss_conf 266665677631111034216882799999996699569999---99886--4999999998579587872004665759
Q ss_pred HHHHHCCCHHHHHHHH
Q ss_conf 6764149904489999
Q 002747 167 REFLHSGNDKDKFKFF 182 (885)
Q Consensus 167 ~~~~~~~~~~~~~~~~ 182 (885)
..++... +..+...+
T Consensus 155 ~~l~~~~-p~eRr~~l 169 (430)
T 1w1w_A 155 EQIAAQS-PVELSRMF 169 (430)
T ss_dssp THHHHSC-HHHHHHTC
T ss_pred HHHHHCC-HHHHHHHH
T ss_conf 9998589-99999999
No 4
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=1.00 E-value=1 Score=160.10 Aligned_cols=111 Identities=27% Similarity=0.395 Sum_probs=92.5
Q ss_pred CCCEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEEE-
Q ss_conf 8805628999712333431688379558999189993579999999982587777666432002112398236999999-
Q 002747 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL- 96 (885)
Q Consensus 18 ~~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~- 96 (885)
+-|+|.+|.|.||++|...+|+|++|+|+|+|+||||||||++||.|++|+++. .++|+.|...+.|.+.|
T Consensus 36 ~~M~l~~L~i~nf~~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~~--------~~~i~~g~~~a~v~~~f~ 107 (517)
T 4ad8_A 36 TGPRLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGRAN--------HDLIRSGEKELLVTGFWG 107 (517)
T ss_dssp --CCCCEEEEESBTTBSCEEEECCCSEEEEEESHHHHHHHHTHHHHHHTCSCCC--------GGGBCTTCSEEEEEEEC-
T ss_pred CCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCH--------HHHHCCCCCCEEEEEEEE
T ss_conf 566642360016166301799538980799859998789999999987367768--------998218997389999998
Q ss_pred EECCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHHC
Q ss_conf 727987777655799599999750-896639997289962113088999999872
Q 002747 97 KNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHF 150 (885)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 150 (885)
...+ +..+.+.|.+. .+.+.+++ ||.+++ ...+..+...+
T Consensus 108 ~~~~---------~~~~~i~r~~~~~g~~~~~i---ng~~v~--~~~l~~~~~~l 148 (517)
T 4ad8_A 108 DGDE---------SEADSASRRLSSAGRGAARL---SGEVVS--VRELQEWAQGR 148 (517)
T ss_dssp ----------------CEEEEEEETTSCCEEES---SSSBCC--HHHHHHHHTTT
T ss_pred ECCC---------CCEEEEEEEEECCCCCEEEE---CCEECC--HHHHHHHHHHH
T ss_conf 5489---------97699999996388838999---999887--99999996310
No 5
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=1.00 E-value=1 Score=158.54 Aligned_cols=160 Identities=25% Similarity=0.384 Sum_probs=124.7
Q ss_pred CCEEEEEEEEECCCC--CCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCC------CEE
Q ss_conf 805628999712333--431688379558999189993579999999982587777666432002112398------236
Q 002747 19 AGTITRVRLENFMCH--SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SYA 90 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~--~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~------~~~ 90 (885)
||+|.+|.|.||++| .+.+++|.+|+|+|+||||||||||++||.|+|++.+....|+....++++.+. ..+
T Consensus 1 mM~i~~l~i~nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (182)
T 3kta_A 1 MPYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYA 80 (182)
T ss_dssp -CEEEEEEEESBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCE
T ss_pred CCEEEEEEEECEEEECCCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHEEECCCCCCCCCCEE
T ss_conf 95689999958486537628996589828999999997899999999997687422345432000366466667777359
Q ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECHHHHHHH
Q ss_conf 999999727987777655799599999750-8966399972899621130889999998728888899013140347676
Q 002747 91 MVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (885)
Q Consensus 91 ~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 169 (885)
.|.+.|.+.+.. + +..+..++|.|.+. .+.+.+.+ +|..+ +...+.+++..++++...+ .+++|++...+
T Consensus 81 ~v~~~f~~~~~~-~--~~~~~~~~i~r~~~~~~~~~~~i---~g~~~--~~~~~~~~l~~~~l~~~~~-~~~~qg~~~~l 151 (182)
T 3kta_A 81 EVAIYFNNEDRG-F--PIDEDEVVIRRRVYPDGRSSYWL---NGRRA--TRSEILDILTAAMISPDGY-NIVLQGDITKF 151 (182)
T ss_dssp EEEEEEECTTCC-S--SSSSSEEEEEEEECTTSCEEEEE---TTEEE--CHHHHHHHHHHTTCCTTCT-TEECTTCTTHH
T ss_pred EEEEEEECCCCC-C--CCCCCEEEEEEEEEECCCEEEEE---CCEEC--CHHHHHHHHHHCCCCCCCC-EEEECCCHHHH
T ss_conf 999999578765-4--56786899999999589579999---99586--8999999999859997887-79975218899
Q ss_pred HHCCCHHHHHHHHHHHHHH
Q ss_conf 4149904489999966279
Q 002747 170 LHSGNDKDKFKFFFKATLL 188 (885)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~ 188 (885)
+.. ++..+.+.+.....+
T Consensus 152 ~~~-~~~~r~~~ld~~~g~ 169 (182)
T 3kta_A 152 IKM-SPLERRLLIDDISGI 169 (182)
T ss_dssp HHS-CHHHHHHHHHHHHTC
T ss_pred HHC-CHHHHHHHHHHHHCH
T ss_conf 827-999999999998785
No 6
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=1.00 E-value=1 Score=154.95 Aligned_cols=138 Identities=24% Similarity=0.399 Sum_probs=104.4
Q ss_pred CEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEEC
Q ss_conf 05628999712333431688379558999189993579999999982587777666432002112398236999999727
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (885)
|+|.+|.+.||++|.+.+|+|.+|+|+|+||||||||||+|||.|+|++..+ .|.....++++.|...+.|+++|..+
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~--~r~~~~~~~~~~~~~~~~v~~~f~~~ 78 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (149)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSC--CTTSSCCCSCSTTCCCEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHEECCCCCEEEEEEEEEC
T ss_conf 9787999968534866599728976999988999889999999999759854--45588788500699748999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEEC-C-CCEEEEECCC--C---CCCCCCH-HHHHHHHHHCCCCCCCC--EEEECHHHHHHH
Q ss_conf 9877776557995999997508-9-6639997289--9---6211308-89999998728888899--013140347676
Q 002747 100 GEDAFKPEIFGDSIIIERRITE-S-TSTTVLKDHQ--G---KRVASRK-QELLELIDHFNIDVENP--CVIMSQDKSREF 169 (885)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~-~-~~~~~~~~~~--g---~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~ 169 (885)
+ ..|.+.|.+.. + .+.++... + | ..+..+. .++.+.+..+ ++...+ .++++|+++..|
T Consensus 79 ~----------~~~~i~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~i~QG~~~~~ 146 (149)
T 1f2t_A 79 G----------TKYRITRRFLKGYSSGEIHAMK-RLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQGQIDAI 146 (149)
T ss_dssp T----------EEEEEEEEECCC----EEEEEE-EEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHHTEECTTHHHHH
T ss_pred C----------EEEEEEEEECCCCCCEEEEEEE-CCCCCCEEECCCCCHHHHHHHHHHH-CCHHHHHHEEEECCCCHHHH
T ss_conf 9----------9999999986788843899975-2689733783447668999999997-69988531689807579879
Q ss_pred HH
Q ss_conf 41
Q 002747 170 LH 171 (885)
Q Consensus 170 ~~ 171 (885)
+.
T Consensus 147 l~ 148 (149)
T 1f2t_A 147 LE 148 (149)
T ss_dssp TC
T ss_pred HH
T ss_conf 53
No 7
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=148.02 Aligned_cols=138 Identities=26% Similarity=0.398 Sum_probs=110.8
Q ss_pred CEEEEEEEEECCCC-CCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCC------CEEEE
Q ss_conf 05628999712333-431688379558999189993579999999982587777666432002112398------23699
Q 002747 20 GTITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SYAMV 92 (885)
Q Consensus 20 m~i~~i~l~nf~~~-~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~------~~~~v 92 (885)
|+|++|.+.||++| +..+|+|.+|+|+|+|+||||||||++||.|++|..+....|+....++++.|. ..+.|
T Consensus 1 M~l~~L~i~nfr~~~~~~~l~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v 80 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYV 80 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEEECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEE
T ss_pred CEEEEEEEECCEEECCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCCCCCCCCCCEEEE
T ss_conf 95759999493521697688569992899999999679999999998688840000202588760267667888861899
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEE-CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHH
Q ss_conf 9999727987777655799599999750-896639997289962113088999999872888889901314034767641
Q 002747 93 EVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (885)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 171 (885)
.+.|.+.+ ..+.+.|.+. .+.+.+++ +|.++ +..++...+...++... .+.++.|+.+..++.
T Consensus 81 ~~~f~~~~----------~~~~i~r~~~~~~~~~~~i---ng~~~--~~~~~~~~~~~~g~~~~-~~~lv~qg~i~~~~~ 144 (322)
T 1e69_A 81 ELVFEENG----------EEITVARELKRTGENTYYL---NGSPV--RLKDIRDRFAGTGLGVD-FYSIVGQGQIDRIVN 144 (322)
T ss_dssp EEEEESSS----------CEEEEEEEEETTSCEEEEE---TTEEE--CHHHHHHHTTTSSTTTT-CCSEEEHHHHHHHHT
T ss_pred EEEEEECC----------EEEEEEEEEECCCCEEEEE---CCCCC--CHHHHHHHHHHCCCCHH-HEEEEEHHHHHHHHH
T ss_conf 99999399----------2999999998699638999---99083--49999999998399804-606674564999986
Q ss_pred CC
Q ss_conf 49
Q 002747 172 SG 173 (885)
Q Consensus 172 ~~ 173 (885)
..
T Consensus 145 ~~ 146 (322)
T 1e69_A 145 AS 146 (322)
T ss_dssp C-
T ss_pred CC
T ss_conf 66
No 8
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=1.00 E-value=1 Score=143.91 Aligned_cols=140 Identities=21% Similarity=0.348 Sum_probs=96.4
Q ss_pred CEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEEC
Q ss_conf 05628999712333431688379558999189993579999999982587777666432002112398236999999727
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (885)
|+|++|++.||++|.+.+|+|++|+|+|+||||||||||+|||+|+|++... .++....++++.|...++|.+.|..+
T Consensus 1 M~i~~l~l~nF~~~~~~~i~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEKD 78 (339)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSCC--CTTCCHHHHBCTTCSEEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHHCCCCCEEEEEEEEEEC
T ss_conf 9679999976217557177279983899999999789999999999648756--67677778861789808999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEECC----CCEEEEECCCCCCCC---CCHHHHHHHHHHC-CCCCCCCEEEECHHHHHHHHH
Q ss_conf 98777765579959999975089----663999728996211---3088999999872-888889901314034767641
Q 002747 100 GEDAFKPEIFGDSIIIERRITES----TSTTVLKDHQGKRVA---SRKQELLELIDHF-NIDVENPCVIMSQDKSREFLH 171 (885)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~~----~~~~~~~~~~g~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~~~ 171 (885)
+ ..|.|.|.+..+ ...+.....++.... .....+..++..+ +.+.+...++++|+.+..++.
T Consensus 79 ~----------~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l~~~~~f~~~~~i~Qg~~~~il~ 148 (339)
T 3qkt_A 79 G----------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILE 148 (339)
T ss_dssp T----------EEEEEEEEEETTCTTSCEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHHTEECTTCTTGGGS
T ss_pred C----------EEEEEEEEEECCCCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHEEECCHHHHHHHH
T ss_conf 9----------999999998547778864378994288255423331678999999863978765425861212999872
No 9
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=1.00 E-value=1 Score=129.12 Aligned_cols=144 Identities=19% Similarity=0.235 Sum_probs=99.5
Q ss_pred CEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEEC
Q ss_conf 05628999712333431688379558999189993579999999982587777666432002112398236999999727
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (885)
|+|.+|.+.||++|.+.+|+|.+|+++|+||||||||||++||+|+|+|........ .....+..+...+.|.+.|..+
T Consensus 1 M~~~~l~~~~f~~~~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al~g~~~r~~~~-~~~~~~~~~~~~~~v~~~f~~~ 79 (365)
T 3qf7_A 1 MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNS-YDYVNRNAVDGTARLVFQFERG 79 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHSCCSSCSSG-GGGBCTTCTTCEEEEEEEEEET
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC-CHHHHCCCCCCCEEEEEEEEEC
T ss_conf 954899996766866617834898699999999978999999999966886555675-0455414788738999999989
Q ss_pred CCCCCCCCCCCCEEEEEEEEEC--CCCEEEEE--CCCCCC--CCCCHHHHHH-HHHHCCCCCCC--CEEEECHHHHHHHH
Q ss_conf 9877776557995999997508--96639997--289962--1130889999-99872888889--90131403476764
Q 002747 100 GEDAFKPEIFGDSIIIERRITE--STSTTVLK--DHQGKR--VASRKQELLE-LIDHFNIDVEN--PCVIMSQDKSREFL 170 (885)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~--~~~~~~~~--~~~g~~--~~~~~~~~~~-~~~~~~~~~~~--~~~~~~q~~~~~~~ 170 (885)
| ..|.|.|.+.. +.....+. ..+|.. +..+..++.. +...+|++... ...+++|+.+..|+
T Consensus 80 g----------~~y~v~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~i~~~lgl~~~~f~~~v~l~Qg~~~~~l 149 (365)
T 3qf7_A 80 G----------KRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLL 149 (365)
T ss_dssp T----------EEEEEEEEEETTTTEEEEEEEEECTTSCEEEEEESHHHHHHHHHHHHTSCHHHHHHHTEECTTCTTTTT
T ss_pred C----------EEEEEEEEEECCCCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHHHCCCHHHHCEEEEECCCCHHHHH
T ss_conf 9----------899999998526788760799983799366513676889999999979999994568997332249898
Q ss_pred HCCC
Q ss_conf 1499
Q 002747 171 HSGN 174 (885)
Q Consensus 171 ~~~~ 174 (885)
...+
T Consensus 150 ~~~~ 153 (365)
T 3qf7_A 150 ISPP 153 (365)
T ss_dssp TSCH
T ss_pred HCCH
T ss_conf 5392
No 10
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=1.00 E-value=1 Score=124.10 Aligned_cols=121 Identities=22% Similarity=0.298 Sum_probs=92.5
Q ss_pred CCCEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEE
Q ss_conf 88056289997123334316883795589991899935799999999825877776664320021123982369999997
Q 002747 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (885)
Q Consensus 18 ~~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~ 97 (885)
-+|+|++|.+.||++|....++|.+|+|+|+||||+||||+++||.++++|+ . |.....++|+.|...+.|.+.|.
T Consensus 2 ~~M~i~~L~l~~~~~~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~~g~-~---R~~~~~~lI~~g~~~~~V~~~~~ 77 (359)
T 2o5v_A 2 GDVRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQ-T---DAPRIEQLIQAGETEAYVRADLQ 77 (359)
T ss_dssp CCCCEEEEEEESBTTCCSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHSC-C---CCSSGGGGBCTTCSCEEEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCC-C---CCCCHHHHHCCCCCCEEEEEEEE
T ss_conf 9868769998273334456999769859999999987559999998742488-7---88777987206998299999982
Q ss_pred ECCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECHHHHH
Q ss_conf 2798777765579959999975089663999728996211308899999987288888990131403476
Q 002747 98 NRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSR 167 (885)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 167 (885)
+++ ..+.|...+..+...+.+ +|..+. +.++ .| -+..++.|+...
T Consensus 78 ~~~----------~~~~i~~~~~~~~~~~~i---ng~~~~-----~~~l---~g----l~~v~~~p~d~~ 122 (359)
T 2o5v_A 78 QGG----------SLSIQEVGLGRGRRQLKV---DGVRAR-----TGDL---PR----GGAVWIRPEDSE 122 (359)
T ss_dssp ETT----------EEEEEEEEEETTEEEEEE---TTEEEC-----GGGC---CS----CCEEEECTTTTH
T ss_pred CCC----------CEEEEEEEEECCCEEEEE---CCEECC-----HHHH---HC----CHHEEECCCCHH
T ss_conf 489----------669999999879669999---992867-----9998---27----023389955376
Done!