BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002748
(885 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 189 bits (479), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 176/340 (51%), Gaps = 18/340 (5%)
Query: 291 DSSLPKALESAVVLDVQNIACGGRHAALVNKQG-EVFSWGEESGGRLGHGVDSDVLHPKL 349
D P L + + ++ CG H ++ G EV+SWG GRLGHG SD+ P
Sbjct: 55 DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLP 114
Query: 350 IDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLE 409
I AL + I+ +ACG+ H AVT+ G++ +WG G LG G+ VP+++ E
Sbjct: 115 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQ-AFE 171
Query: 410 GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAA 469
GI + ++ G HTA VT G L+ +G G +G LG GDR +P V S G + A
Sbjct: 172 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 231
Query: 470 CGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNF 529
CG HT +V G L+T+G G+LGHGD E L+P + AL
Sbjct: 232 CGWRHTISV------------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFI 279
Query: 530 CRVACGHSLTVALTTSGHVYTMGSPVYGQLG-NPQADGKLPNRVEGKLSKSFVEEIACGS 588
+++ G T+ALT+ G +Y G +GQ+G D P +V + V+ ++CG
Sbjct: 280 SQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGW 338
Query: 589 YHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEAL 628
H +T + V+ WG+G NG+LG G++ DRN P ++EAL
Sbjct: 339 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 177/340 (52%), Gaps = 18/340 (5%)
Query: 309 IACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHT 368
I+ G H+ + V SWG G+LGHG D P + AL I V CG HT
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 369 CAVTLSG-DLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVT 427
A + SG ++Y+WG G +FG LGHGN + P + L GI + I+CG H VT
Sbjct: 81 VAYSQSGMEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 137
Query: 428 SAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXX 487
G++ ++G G LG GD + +P+++++ +G+R A G HTAAV E
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 190
Query: 488 XXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGH 547
G L+ WG G G LG GD+ +LVP V + VACG T++++ SG
Sbjct: 191 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245
Query: 548 VYTMGSPVYGQLGNPQ-ADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKG 606
+YT G YGQLG+ D +P+++E LS SF+ +I+ G H LTS ++Y WG
Sbjct: 246 LYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGWRHTMALTSDGKLYGWGWN 304
Query: 607 ANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 646
G++G G+ D+ SP V D++V ++CG T A+
Sbjct: 305 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 344
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 532 VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYH- 590
++ G S +VAL + V + G GQLG+ A+ + L + + CG+ H
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 591 VAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICL 648
VA S EVY+WG G GRLGHG++ D +P ++AL ++K IACG + A+ +
Sbjct: 81 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 138
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 306 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALS 354
V ++CG RH V ++ VF+WG + G+LG G D PK+I+ALS
Sbjct: 331 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 188 bits (478), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 176/340 (51%), Gaps = 18/340 (5%)
Query: 291 DSSLPKALESAVVLDVQNIACGGRHAALVNKQG-EVFSWGEESGGRLGHGVDSDVLHPKL 349
D P L + + ++ CG H ++ G EV+SWG GRLGHG SD+ P
Sbjct: 43 DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLP 102
Query: 350 IDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLE 409
I AL + I+ +ACG+ H AVT+ G++ +WG G LG G+ VP+++ E
Sbjct: 103 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQ-AFE 159
Query: 410 GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAA 469
GI + ++ G HTA VT G L+ +G G +G LG GDR +P V S G + A
Sbjct: 160 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 219
Query: 470 CGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNF 529
CG HT +V G L+T+G G+LGHGD E L+P + AL
Sbjct: 220 CGWRHTISV------------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFI 267
Query: 530 CRVACGHSLTVALTTSGHVYTMGSPVYGQLG-NPQADGKLPNRVEGKLSKSFVEEIACGS 588
+++ G T+ALT+ G +Y G +GQ+G D P +V + V+ ++CG
Sbjct: 268 SQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGW 326
Query: 589 YHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEAL 628
H +T + V+ WG+G NG+LG G++ DRN P ++EAL
Sbjct: 327 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 185 bits (470), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 177/340 (52%), Gaps = 18/340 (5%)
Query: 309 IACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHT 368
I+ G H+ + V SWG G+LGHG D P + AL I V CG HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 369 CAVTLSG-DLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVT 427
A + SG ++Y+WG G +FG LGHGN + P + L GI + I+CG H VT
Sbjct: 69 VAYSQSGMEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 125
Query: 428 SAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXX 487
G++ ++G G LG GD + +P+++++ +G+R A G HTAAV E
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 178
Query: 488 XXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGH 547
G L+ WG G G LG GD+ +LVP V + VACG T++++ SG
Sbjct: 179 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 548 VYTMGSPVYGQLGNPQ-ADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKG 606
+YT G YGQLG+ D +P+++E LS SF+ +I+ G H LTS ++Y WG
Sbjct: 234 LYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGFRHTMALTSDGKLYGWGWN 292
Query: 607 ANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 646
G++G G+ D+ SP V D++V ++CG T A+
Sbjct: 293 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 532 VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYH- 590
++ G S +VAL + V + G GQLG+ A+ + L + + CG+ H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 591 VAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICL 648
VA S EVY+WG G GRLGHG++ D +P ++AL ++K IACG + A+ +
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 306 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALS 354
V ++CG RH V ++ VF+WG + G+LG G D PK+I+ALS
Sbjct: 319 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 176/340 (51%), Gaps = 18/340 (5%)
Query: 291 DSSLPKALESAVVLDVQNIACGGRHAALVNKQG-EVFSWGEESGGRLGHGVDSDVLHPKL 349
D P L + + ++ CG H ++ G EV+SWG GRLGHG SD+ P
Sbjct: 43 DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLP 102
Query: 350 IDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLE 409
I AL + I+ +ACG+ H AVT+ G++ +WG G LG G+ VP+++ E
Sbjct: 103 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQ-AFE 159
Query: 410 GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAA 469
GI + ++ G HTA VT G L+ +G G +G LG GDR +P V S G + A
Sbjct: 160 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA 219
Query: 470 CGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNF 529
CG HT +V G L+T+G G+LGHGD E L+P + AL
Sbjct: 220 CGWRHTISV------------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFI 267
Query: 530 CRVACGHSLTVALTTSGHVYTMGSPVYGQLG-NPQADGKLPNRVEGKLSKSFVEEIACGS 588
+++ G T+ALT+ G +Y G +GQ+G D P +V + V+ ++CG
Sbjct: 268 SQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGW 326
Query: 589 YHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEAL 628
H +T + V+ WG+G NG+LG G++ DRN P ++EAL
Sbjct: 327 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 185 bits (470), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 177/340 (52%), Gaps = 18/340 (5%)
Query: 309 IACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHT 368
I+ G H+ + V SWG G+LGHG D P + AL I V CG HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 369 CAVTLSG-DLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVT 427
A + SG ++Y+WG G +FG LGHGN + P + L GI + I+CG H VT
Sbjct: 69 VAYSQSGMEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 125
Query: 428 SAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXX 487
G++ ++G G LG GD + +P+++++ +G+R A G HTAAV E
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 178
Query: 488 XXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGH 547
G L+ WG G G LG GD+ +LVP V + VACG T++++ SG
Sbjct: 179 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 548 VYTMGSPVYGQLGNPQ-ADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKG 606
+YT G YGQLG+ D +P+++E LS SF+ +I+ G H LTS ++Y WG
Sbjct: 234 LYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGWRHTMALTSDGKLYGWGWN 292
Query: 607 ANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 646
G++G G+ D+ SP V D++V ++CG T A+
Sbjct: 293 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 532 VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYH- 590
++ G S +VAL + V + G GQLG+ A+ + L + + CG+ H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 591 VAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICL 648
VA S EVY+WG G GRLGHG++ D +P ++AL ++K IACG + A+ +
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 306 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALS 354
V ++CG RH V ++ VF+WG + G+LG G D PK+I+ALS
Sbjct: 319 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 178/340 (52%), Gaps = 18/340 (5%)
Query: 309 IACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHT 368
I+ G H+ + V SWG G+LGHG D P + AL I V CG HT
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 70
Query: 369 CAVTLSG-DLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVT 427
A + SG ++Y+WG G +FG LGHGN + P + L GI + I+CG H VT
Sbjct: 71 VAYSQSGXEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 127
Query: 428 SAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXX 487
G++ ++G G LG GD + +P+++++ +G+R A G HTAAV E
Sbjct: 128 XEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTE------- 180
Query: 488 XXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGH 547
G L+ WG G G LG GD+ +LVP V + VACG T++++ SG
Sbjct: 181 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGA 235
Query: 548 VYTMGSPVYGQLGNPQ-ADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKG 606
+YT G YGQLG+ D +P+++E LS SF+ +I+ G+ H LTS ++Y WG
Sbjct: 236 LYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGARHTXALTSDGKLYGWGWN 294
Query: 607 ANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 646
G++G G+ D+ SP V D++V ++CG T A+
Sbjct: 295 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 334
Score = 186 bits (472), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 175/344 (50%), Gaps = 18/344 (5%)
Query: 287 GVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQG-EVFSWGEESGGRLGHGVDSDVL 345
G D P L + + ++ CG H ++ G EV+SWG GRLGHG SD+
Sbjct: 41 GDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLF 100
Query: 346 HPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVN 405
P I AL + I+ +ACG+ H AVT G++ +WG G LG G+ VP+++
Sbjct: 101 TPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQ 158
Query: 406 GPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRT 465
EGI + ++ G HTA VT G L+ +G G +G LG GDR +P V S G +
Sbjct: 159 -AFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKX 217
Query: 466 VRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALV 525
ACG HT +V G L+T+G G+LGHGD E L+P + AL
Sbjct: 218 SXVACGWRHTISV------------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS 265
Query: 526 EPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLG-NPQADGKLPNRVEGKLSKSFVEEI 584
+++ G T ALT+ G +Y G +GQ+G D P +V + V+ +
Sbjct: 266 NSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-V 324
Query: 585 ACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEAL 628
+CG H +T + V+ WG+G NG+LG G++ DRN P ++EAL
Sbjct: 325 SCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 306 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALS 354
V ++CG RH V ++ VF+WG + G+LG G D PK+I+ALS
Sbjct: 321 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 369
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 127/355 (35%), Positives = 182/355 (51%), Gaps = 17/355 (4%)
Query: 294 LPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDAL 353
+P E+ L + G + V G++++ G +GGRLG G V P L++++
Sbjct: 43 VPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI 102
Query: 354 SNMNIELVAC--GEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGI 411
++ I+ VA G H A++ G++Y+WG+ G LGHGN P RV L GI
Sbjct: 103 QHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRP-RVIESLRGI 159
Query: 412 HVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACG 471
V ++ G H+A VT+AG L+T+G G +G LGH D + P+ VE+L+G R V ACG
Sbjct: 160 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219
Query: 472 VWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCR 531
+ +++WGDGD G+LG G + VP + +L +
Sbjct: 220 SGDAQTLC----------LTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVK 269
Query: 532 VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADG-KLPNRVEGKLSKSFVEEIACGSYH 590
V CG +VALT SG VYT G Y +LG+ D + P +V+G K + IA GS H
Sbjct: 270 VECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVI-AIATGSLH 328
Query: 591 VAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAA 645
T EVYTWG G+LG G T+ P LV AL+ K+V +ACG+ T A
Sbjct: 329 CVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 136/253 (53%), Gaps = 17/253 (6%)
Query: 295 PKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALS 354
P+ +ES ++V ++A GG H+A V G++++WG+ GRLGH D L PKL++AL
Sbjct: 150 PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209
Query: 355 NMNIELVACGEYHTCAVTLSGD--LYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIH 412
+ +ACG + L+ D +++WGDG Y G LG G VP +++ L G+
Sbjct: 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDY--GKLGRGGSDGCKVPMKID-SLTGLG 266
Query: 413 VSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGV 472
V + CG + +T +G ++T+G G + LGHG V PR+V+ L+G + + A G
Sbjct: 267 VVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS 326
Query: 473 WHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRV 532
H E G+++TWGD D+G+LG G A P VAAL RV
Sbjct: 327 LHCVCCTE------------DGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRV 374
Query: 533 ACGHSLTVALTTS 545
ACG + T+A +TS
Sbjct: 375 ACGSAHTLAWSTS 387
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 162/336 (48%), Gaps = 27/336 (8%)
Query: 313 GRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVT 372
GR G ++ WG G+LG + V P +AL+ + + GE AVT
Sbjct: 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 69
Query: 373 LSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGI-HV----SSISCGPWHTAVVT 427
G LY G G +G VS P LE I HV +++ G H ++
Sbjct: 70 ADGKLYATGYGAGGRLGIGGTESVS--TPTL----LESIQHVFIKKVAVNSGGKHCLALS 123
Query: 428 SAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXX 487
S G+++++G+ G LGHG+R PR +ESL+G+ V A G H+A V
Sbjct: 124 SEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAA------ 177
Query: 488 XXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVAC--GHSLTVALTTS 545
G L+TWG G GRLGH D E +L P V AL +AC G + T+ LT
Sbjct: 178 ------GDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDD 231
Query: 546 GHVYTMGSPVYGQLGNPQADG-KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWG 604
V++ G YG+LG +DG K+P +++ L+ V ++ CGS LT VYTWG
Sbjct: 232 DTVWSWGDGDYGKLGRGGSDGCKVPMKID-SLTGLGVVKVECGSQFSVALTKSGAVYTWG 290
Query: 605 KGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGT 640
KG RLGHG D P V+ L+ K+V +IA G+
Sbjct: 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS 326
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 16/226 (7%)
Query: 425 VVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKG--LRTVRAACGVWHTAAVVEVM 482
VT+ G+L+ G G G LG G +SVS P +ES++ ++ V G H A+
Sbjct: 67 AVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLAL---- 122
Query: 483 VGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVAL 542
G++++WG+ + G+LGHG++ P + +L VA G + + +
Sbjct: 123 --------SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACV 174
Query: 543 TTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGS--YHVAVLTSKTEV 600
T +G +YT G YG+LG+ ++ +L ++ L V +IACGS LT V
Sbjct: 175 TAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTV 234
Query: 601 YTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 646
++WG G G+LG G +D P +++L V + CG+ F+ A+
Sbjct: 235 WSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVAL 280
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 117/251 (46%), Gaps = 24/251 (9%)
Query: 429 AGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXXX 488
+G ++ +G G LG + V +P E+L LR V+ G AV
Sbjct: 19 SGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT--------- 69
Query: 489 XXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVAC--GHSLTVALTTSG 546
GKL+ G G GRLG G E+ PT + ++ +VA G +AL++ G
Sbjct: 70 ---ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEG 126
Query: 547 HVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKG 606
VY+ G G+LG+ RV L V ++A G H A +T+ ++YTWGKG
Sbjct: 127 EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186
Query: 607 ANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICLH------KWVSG----VD 656
GRLGH D++D+ P LVEAL+ +V IACG+ +CL W G +
Sbjct: 187 RYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLG 246
Query: 657 QSMCSGCRLPF 667
+ GC++P
Sbjct: 247 RGGSDGCKVPM 257
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 148/339 (43%), Gaps = 32/339 (9%)
Query: 301 AVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLH--PKLIDALSNMNI 358
A + D +I+ GG H ++ K G+++S+G G LG D P LID
Sbjct: 72 AGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKA-- 129
Query: 359 ELVACGEYHTCAVTLSGDLYTWG---DGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSS 415
++ G+ H+ + G ++ WG D N GL GN+ + P + +EG S
Sbjct: 130 LCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRT---PIDL---MEGTVCCS 183
Query: 416 ISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLR-TVRAACGVWH 474
I+ G H ++T+AG++FT G G LG +S+S E +G R +R +
Sbjct: 184 IASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSIS----GEGRRGKRDLLRPTQLIIT 239
Query: 475 TAAVVEVMVGXXXXXXXXXGKL-FTWGDG--DKGRLGHGDKEAKLVPTCVAALVEPNFCR 531
A E + + W G + +L H K + T + ++ +
Sbjct: 240 RAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELK-DIRH 298
Query: 532 VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVE-----GKLSKSFVEEIAC 586
+A G TV LTT +G P YG+LG G + + VE KL++ V + C
Sbjct: 299 IAGGQHHTVILTTDLKCSVVGRPEYGRLGL----GDVKDVVEKPTIVKKLTEKIV-SVGC 353
Query: 587 GSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLV 625
G +T ++Y+WG G N +LG GD DD P +V
Sbjct: 354 GEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 155/365 (42%), Gaps = 51/365 (13%)
Query: 323 GEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIEL-VACGEYHTCAVTLSGDLYTWG 381
G V G G+LG G D+L K + ++ + + ++ G H +T SGD+Y++G
Sbjct: 43 GNVLVCGNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFG 100
Query: 382 DGTYNFGLLGH--GNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGD-- 437
+ G LG + S P ++ P + + IS G H+A + G++F +G
Sbjct: 101 --CNDEGALGRDTSEDGSESKPDLIDLPGKAL---CISAGDSHSACLLEDGRVFAWGSFR 155
Query: 438 ---GTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGXXXXXXXXXG 494
G G+ G++++ ++ ++G A G H + G
Sbjct: 156 DSHGNMGLTIDGNKRT-----PIDLMEGTVCCSIASGADHLVILT------------TAG 198
Query: 495 KLFTWGDGDKGRLGH-------GD----KEAKLVPT-CVAALVEPNFCRVACGHSLTVAL 542
K+FT G ++G+LG G+ K L PT + +P A + +
Sbjct: 199 KVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRE 258
Query: 543 TTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYT 602
+ + ++ G + QL + + GK K + IA G +H +LT+ +
Sbjct: 259 SQTQVIWATGLNNFKQLAH-ETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSV 317
Query: 603 WGKGANGRLGHGDTDD-RNSPSLVEALKDKQVKSIACGTNFTAAIC----LHKWVSGVDQ 657
G+ GRLG GD D P++V+ L +K V S+ CG + A+ L+ W SGV+
Sbjct: 318 VGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIV-SVGCGEVCSYAVTIDGKLYSWGSGVNN 376
Query: 658 SMCSG 662
+ G
Sbjct: 377 QLGVG 381
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 90/228 (39%), Gaps = 28/228 (12%)
Query: 308 NIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDS-----------DVLHPKLIDALSNM 356
+IA G H ++ G+VF+ G G+LG + D+L P +
Sbjct: 183 SIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAK 242
Query: 357 NIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSI 416
E + Y T + S W G NF L H + + + L+ I I
Sbjct: 243 PFEAIWATNYCTF-MRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIR--HI 299
Query: 417 SCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSV-SIPREVESLKGLRTVRAACGVWHT 475
+ G HT ++T+ + G +G LG GD K V P V+ L + V CG +
Sbjct: 300 AGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLT-EKIVSVGCGEVCS 358
Query: 476 AAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAA 523
AV GKL++WG G +LG GD + +L P V +
Sbjct: 359 YAVT------------IDGKLYSWGSGVNNQLGVGDGDDELEPIVVVS 394
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 305 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLH-PKLIDALSNMNIELVAC 363
D+++IA G H ++ + G GRLG G DV+ P ++ L+ I V C
Sbjct: 295 DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGC 353
Query: 364 GEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHT 423
GE + AVT+ G LY+WG G N +G G++ LE I V S + H
Sbjct: 354 GEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDD-----------ELEPIVVVSKNTQGKHM 402
Query: 424 AVVTSAGQLFTF 435
+ + GQ F
Sbjct: 403 LLASGGGQHAIF 414
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 165/370 (44%), Gaps = 43/370 (11%)
Query: 305 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELV--A 362
DV GG H ++K G+V+S+G G LG D+ V +++ + ++V +
Sbjct: 60 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR--DTSVEGSEMVPGKVELQEKVVQVS 117
Query: 363 CGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSH-WVPKRVNGPLEGIHVSSISCGPW 421
G+ HT A+T G ++ WG N G++G + VP +V L+ + V ++ G
Sbjct: 118 AGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ--LD-VPVVKVASGND 174
Query: 422 HTAVVTSAGQLFTFGDGTFGVLGH--------GDRKSVS---IPREVE-----SLKGLRT 465
H ++T+ G L+T G G G LG G R+ + +P+ V S +R
Sbjct: 175 HLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRF 234
Query: 466 VRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALV 525
A CG + T A+ G ++ +G + +LG E+ +P + +
Sbjct: 235 QDAFCGAYFTFAI------------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFK 282
Query: 526 EP--NFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSK-SFVE 582
++ + G TV + + G Y++G YG+LG +G + +S+ V
Sbjct: 283 NSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLG--LGEGAEEKSIPTLISRLPAVS 340
Query: 583 EIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSP--SLVEALKDKQVKSIACGT 640
+ACG+ +T V+ WG G N +LG G +D SP + + L+++ V S++ G
Sbjct: 341 SVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGG 400
Query: 641 NFTAAICLHK 650
T + K
Sbjct: 401 QHTVLLVKDK 410
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 494 GKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGS 553
G + T G GD G+LG G+ + + ++ E + + G TV L+ SG VY+ G
Sbjct: 27 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPE-DVVQAEAGGMHTVCLSKSGQVYSFGC 85
Query: 554 PVYGQLG---NPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWG--KGAN 608
G LG + + +P +VE L + V +++ G H A LT V+ WG + N
Sbjct: 86 NDEGALGRDTSVEGSEMVPGKVE--LQEKVV-QVSAGDSHTAALTDDGRVFLWGSFRDNN 142
Query: 609 GRLG 612
G +G
Sbjct: 143 GVIG 146
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 164/370 (44%), Gaps = 43/370 (11%)
Query: 305 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMN--IELVA 362
DV GG H ++K G+V+S+G G LG D+ V +++ + + V+
Sbjct: 49 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR--DTSVEGSEMVPGKVELQEKVVQVS 106
Query: 363 CGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSH-WVPKRVNGPLEGIHVSSISCGPW 421
G+ HT A+T G ++ WG N G++G + VP +V L+ + V ++ G
Sbjct: 107 AGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ--LD-VPVVKVASGND 163
Query: 422 HTAVVTSAGQLFTFGDGTFGVLGH--------GDRKSVS---IPREVE-----SLKGLRT 465
H ++T+ G L+T G G G LG G R+ + +P+ V S +R
Sbjct: 164 HLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRF 223
Query: 466 VRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALV 525
A CG + T A+ G ++ +G + +LG E+ +P + +
Sbjct: 224 QDAFCGAYFTFAI------------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFK 271
Query: 526 EP--NFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSK-SFVE 582
++ + G TV + + G Y++G YG+LG +G + +S+ V
Sbjct: 272 NSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLG--LGEGAEEKSIPTLISRLPAVS 329
Query: 583 EIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSP--SLVEALKDKQVKSIACGT 640
+ACG+ +T V+ WG G N +LG G +D SP + + L+++ V S++ G
Sbjct: 330 SVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGG 389
Query: 641 NFTAAICLHK 650
T + K
Sbjct: 390 QHTVLLVKDK 399
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 494 GKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGS 553
G + T G GD G+LG G+ + + ++ E + + G TV L+ SG VY+ G
Sbjct: 16 GLVLTLGQGDVGQLGLGENVMERKKPALVSIPE-DVVQAEAGGMHTVCLSKSGQVYSFGC 74
Query: 554 PVYGQLG---NPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWG--KGAN 608
G LG + + +P +VE L + V +++ G H A LT V+ WG + N
Sbjct: 75 NDEGALGRDTSVEGSEMVPGKVE--LQEKVV-QVSAGDSHTAALTDDGRVFLWGSFRDNN 131
Query: 609 GRLG 612
G +G
Sbjct: 132 GVIG 135
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 113/260 (43%), Gaps = 41/260 (15%)
Query: 305 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLID--ALSNMNIELVA 362
++ +A G H ++++G VF+WG +LG V + K +D +++ +A
Sbjct: 205 NIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKV-MERFRLKTLDPRPFGLRHVKYIA 263
Query: 363 CGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWV----PKRVNGPLEGIHVSSISC 418
GE H A+T L +W G FG G +V PKR+ P + + + SI+
Sbjct: 264 SGENHCFALTKDNKLVSW--GLNQFGQCGVSEDVEDGALVTKPKRLALP-DNVVIRSIAA 320
Query: 419 GPWHTAVVTSAGQLFTFGDGTFGVLG--------------HGDRKSVSIPREVESLKGLR 464
G H+ +++ G L++ G +G HG ++V +P ++ ++ +
Sbjct: 321 GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFK 380
Query: 465 TVRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKL-VPTCV-- 521
+V A G H+ AV + G ++WG G+ +G G E VPT +
Sbjct: 381 SV--AAGSHHSVAVAQ------------NGIAYSWGFGETYAVGLGPFEDDTEVPTRIKN 426
Query: 522 AALVEPNFCRVACGHSLTVA 541
A + N V CG +V+
Sbjct: 427 TATQDHNIILVGCGGQFSVS 446
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 152/393 (38%), Gaps = 68/393 (17%)
Query: 306 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKL-------------IDA 352
+ + A GG H ++++ V+SWG G LG + K ++
Sbjct: 69 IISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNE 128
Query: 353 LSNMNIEL----------------VACGEYHTCAVTLSGDLYTWGDGTYNFGLLG-HGNE 395
L + ++ +A + +CA+ +G++Y WG N G+LG + ++
Sbjct: 129 LESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDK 188
Query: 396 VS-HWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIP 454
+ P +V ++ ++ G H + G +F +G+G LG + +
Sbjct: 189 IKIQKTPWKVP-TFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLK 247
Query: 455 REVESLKGLRTVR-AACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLG-HGDK 512
GLR V+ A G H A+ + KL +WG G+ G D
Sbjct: 248 TLDPRPFGLRHVKYIASGENHCFALTK------------DNKLVSWGLNQFGQCGVSEDV 295
Query: 513 EAKLVPTCVAALVEPN---FCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLP 569
E + T L P+ +A G ++ L+ G +Y+ G ++G P+ + LP
Sbjct: 296 EDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDN--LP 353
Query: 570 NR----VEGKLSKSFV----------EEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGD 615
V GK + + +A GS+H + Y+WG G +G G
Sbjct: 354 EYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGP 413
Query: 616 -TDDRNSPSLVE--ALKDKQVKSIACGTNFTAA 645
DD P+ ++ A +D + + CG F+ +
Sbjct: 414 FEDDTEVPTRIKNTATQDHNIILVGCGGQFSVS 446
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 136/342 (39%), Gaps = 72/342 (21%)
Query: 314 RHAALVNKQGEVFSWGEESGGRLGHGV---DSDVLHPKLIDALSNMNIELV--ACGEYHT 368
+H L + ++F WG S LG G + +V P+L L +++ A G HT
Sbjct: 20 KHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHT 79
Query: 369 CAVTLSGDLYTWGDGTYNFGLLGHG------------------------NEVSHW---VP 401
A+ ++++W G + G LG NE+ +P
Sbjct: 80 LALDEESNVWSW--GCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIP 137
Query: 402 KRVNGPL-EGIHVSSISCGPWHTAVVTSAGQLFTFGDGTF----GVLG-HGDRKSVS-IP 454
+ PL EG V ++ + + S G+++ + GTF G+LG + D+ + P
Sbjct: 138 RESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAW--GTFRCNEGILGFYQDKIKIQKTP 195
Query: 455 REVESLKGLRTVRAACGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEA 514
+V + V+ A G H + E G +F WG+G + +LG
Sbjct: 196 WKVPTFSKYNIVQLAPGKDHILFLDE------------EGMVFAWGNGQQNQLGR----- 238
Query: 515 KLVPTCVAALVEP------NFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQ--ADG 566
K++ ++P + +A G + ALT + + G +GQ G + DG
Sbjct: 239 KVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDG 298
Query: 567 KL---PNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGK 605
L P R+ + IA G +H +L+ ++Y+ G+
Sbjct: 299 ALVTKPKRL-ALPDNVVIRSIAAGEHHSLILSQDGDLYSCGR 339
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 96/265 (36%), Gaps = 53/265 (20%)
Query: 422 HTAVVTSAGQLFTFGDGTFGVLGHG---DRKSVSIPREVESL--KGLRTVRAACGVWHTA 476
H + +F +G G+ LG G K V PR L + + A G HT
Sbjct: 21 HMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTL 80
Query: 477 AVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKL-------------------- 516
A+ E +++WG D G LG AK
Sbjct: 81 ALDE------------ESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNE 128
Query: 517 VPTCVAALVEPNFCRVACGH---------SLTVALTTSGHVYTMGS-----PVYGQLGNP 562
+ + A + +F +A GH +++ AL ++G VY G+ + G +
Sbjct: 129 LESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDK 188
Query: 563 QADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSP 622
K P +V SK + ++A G H+ L + V+ WG G +LG +
Sbjct: 189 IKIQKTPWKVP-TFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLK 247
Query: 623 SL-VEALKDKQVKSIACGTNFTAAI 646
+L + VK IA G N A+
Sbjct: 248 TLDPRPFGLRHVKYIASGENHCFAL 272
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 650 KWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVC 709
KW + C C F+ R RH+C CG +FC CS+K +L P+ KP RVC
Sbjct: 62 KWAEDNEVQNCMACGKGFSVTVR-RHHCRQCGNIFCAECSAKNAL----TPSSKKPVRVC 116
Query: 710 DNCFNKLR 717
D CFN L+
Sbjct: 117 DACFNDLQ 124
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With
Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 650 KWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVC 709
KW + C C F+ +RH+C CG +FC CS+K +L P+ KP RVC
Sbjct: 2 KWAEDNEVQNCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNAL----TPSSKKPVRVC 56
Query: 710 DNCFNKLR 717
D CFN L+
Sbjct: 57 DACFNDLQ 64
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve
Domain-Containing Protein 12
Length = 89
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 649 HKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRV 708
H W+ + + C C F+ R++H+C NCG +FC++CSS + P+ KP RV
Sbjct: 18 HAWLKDDEATHCRQCEKEFS-ISRRKHHCRNCGHIFCNTCSSNE----LALPSYPKPVRV 72
Query: 709 CDNCFNKL 716
CD+C L
Sbjct: 73 CDSCHTLL 80
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing
Protein
Length = 82
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 649 HKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRV 708
H W+ + + C C F+ R++H+C NCG +FC++CSS + P+ KP RV
Sbjct: 11 HAWLKDDEATHCRQCEKEFS-ISRRKHHCRNCGHIFCNTCSSNE----LALPSYPKPVRV 65
Query: 709 CDNCFNKL 716
CD+C L
Sbjct: 66 CDSCHTLL 73
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 651 WVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCD 710
W D C+GC F R RH+C NCG V C CS ++ A +P RVCD
Sbjct: 15 WQEDEDAPACNGCGCVFTTTVR-RHHCRNCGYVLCGDCSRHRA--AIPMRGITEPERVCD 71
Query: 711 NCFNKLRKT 719
C+ LR +
Sbjct: 72 ACYLALRSS 80
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 655 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNP----NKPYRVCD 710
D +C CR+ F F ++H+C NCG VFC C++K+ P P K RVCD
Sbjct: 159 ADGRVCHRCRVEFT-FTNRKHHCRNCGQVFCGQCTAKQ------CPLPKYGIEKEVRVCD 211
Query: 711 NCFNKLRK 718
CF L++
Sbjct: 212 GCFAALQR 219
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 655 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFN 714
VD C CR+ F RK H+C CG +FC CSSK S K RVC+ C+
Sbjct: 162 VDAEECHRCRVQFGVMTRK-HHCRACGQIFCGKCSSKYSTIPKFG--IEKEVRVCEPCYE 218
Query: 715 KLRK 718
+L +
Sbjct: 219 QLNR 222
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16)
At 1.1a Resolution
Length = 90
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 651 WVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCD 710
WV + C C++ F F ++RH+C CG VFC C ++K + K RVC
Sbjct: 14 WVPDSEAPNCMNCQVKFT-FTKRRHHCRACGKVFCGVCCNRKCKLQYL----EKEARVCV 68
Query: 711 NCFNKLRK 718
C+ + K
Sbjct: 69 VCYETISK 76
>pdb|1MAI|A Chain A, Structure Of The Pleckstrin Homology Domain From
Phospholipase C Delta In Complex With Inositol
Trisphosphate
Length = 131
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 18 ITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGK------EEKHLKLSHVSRIIS 71
+ AL KG+ LLK + ++L D IW + E + + + +
Sbjct: 10 LQALLKGSQLLKVKSSSWRRERFYKLQEDCKT-IWQESRKVMRSPESQLFSIEDIQEVRM 68
Query: 72 GQRTPIFQRYPRPEKEYQSFSLIYNDR--SLDLICKDKDEAEVWFSGLKALISRS 124
G RT +++ R E + FS+++ D+ +LDLI +A+ W GL+ +I S
Sbjct: 69 GHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIHHS 123
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 660 CSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 718
C C F+ +RH+C+ CG + C +CS K + ++ +VCD CF +L+K
Sbjct: 378 CXNCGCDFS-LTLRRHHCHACGKIVCRNCSRN---KYPLKYLKDRXAKVCDGCFGELKK 432
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 36.6 bits (83), Expect = 0.072, Method: Composition-based stats.
Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 59/209 (28%)
Query: 293 SLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDA 352
++P A +S V IA G H+ L K GEV +WG G+ + A
Sbjct: 58 TMPAATQSGV----DAIAAGNYHS-LALKDGEVIAWGGNEDGQ------------TTVPA 100
Query: 353 LSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIH 412
+ ++ +A G + + A+ G + WGD + + VP + +
Sbjct: 101 EARSGVDAIAAGAWASYALK-DGKVIAWGDDS----------DGQTTVPAEAQSGVTALD 149
Query: 413 VSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGV 472
G +TA+ G + +GD FG ++P E +S G+ V A G+
Sbjct: 150 ------GGVYTALAVKNGGVIAWGDNYFG--------QTTVPAEAQS--GVDDV--AGGI 191
Query: 473 WHTAAVVEVMVGXXXXXXXXXGKLFTWGD 501
+H+ A+ + GK+ WGD
Sbjct: 192 FHSLALKD-------------GKVIAWGD 207
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 83/359 (23%), Positives = 126/359 (35%), Gaps = 107/359 (29%)
Query: 291 DSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLI 350
++++P +S V + GG L K G+V WG G+L +
Sbjct: 17 EATVPAEAQSGV-----DAIAGGYFHGLALKGGKVLGWGANLNGQL------------TM 59
Query: 351 DALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSH-WVPKRVNGPLE 409
A + ++ +A G YH+ A+ G++ WG GNE VP
Sbjct: 60 PAATQSGVDAIAAGNYHSLALK-DGEVIAWG-----------GNEDGQTTVPAEARS--- 104
Query: 410 GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAA 469
V +I+ G W + + G++ +GD + G ++P E +S V A
Sbjct: 105 --GVDAIAAGAWASYALKD-GKVIAWGDDSDG--------QTTVPAEAQS-----GVTAL 148
Query: 470 CGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNF 529
G +TA V+ G + WGD G+ T V A +
Sbjct: 149 DGGVYTALAVK------------NGGVIAWGDNYFGQ------------TTVPAEAQSGV 184
Query: 530 CRVACG--HSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACG 587
VA G HSL + G V G Y Q P + S V IA G
Sbjct: 185 DDVAGGIFHSLAL---KDGKVIAWGDNRYKQTTVPTE------------ALSGVSAIASG 229
Query: 588 SYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 646
++ L + +V WG R +PS V++ V SI G N A+
Sbjct: 230 EWYSLALKNG-KVIAWGS------------SRTAPSSVQS----GVSSIEAGPNAAYAL 271
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 36.6 bits (83), Expect = 0.072, Method: Composition-based stats.
Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 59/209 (28%)
Query: 293 SLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDA 352
++P A +S V IA G H+ L K GEV +WG G+ + A
Sbjct: 56 TMPAATQSGV----DAIAAGNYHS-LALKDGEVIAWGGNEDGQ------------TTVPA 98
Query: 353 LSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIH 412
+ ++ +A G + + A+ G + WGD + + VP + +
Sbjct: 99 EARSGVDAIAAGAWASYALK-DGKVIAWGDDS----------DGQTTVPAEAQSGVTALD 147
Query: 413 VSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGV 472
G +TA+ G + +GD FG ++P E +S G+ V A G+
Sbjct: 148 ------GGVYTALAVKNGGVIAWGDNYFG--------QTTVPAEAQS--GVDDV--AGGI 189
Query: 473 WHTAAVVEVMVGXXXXXXXXXGKLFTWGD 501
+H+ A+ + GK+ WGD
Sbjct: 190 FHSLALKD-------------GKVIAWGD 205
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 83/359 (23%), Positives = 126/359 (35%), Gaps = 107/359 (29%)
Query: 291 DSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLI 350
++++P +S V + GG L K G+V WG G+L +
Sbjct: 15 EATVPAEAQSGV-----DAIAGGYFHGLALKGGKVLGWGANLNGQL------------TM 57
Query: 351 DALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSH-WVPKRVNGPLE 409
A + ++ +A G YH+ A+ G++ WG GNE VP
Sbjct: 58 PAATQSGVDAIAAGNYHSLALK-DGEVIAWG-----------GNEDGQTTVPAEARS--- 102
Query: 410 GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAA 469
V +I+ G W + + G++ +GD + G ++P E +S V A
Sbjct: 103 --GVDAIAAGAWASYALKD-GKVIAWGDDSDG--------QTTVPAEAQS-----GVTAL 146
Query: 470 CGVWHTAAVVEVMVGXXXXXXXXXGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNF 529
G +TA V+ G + WGD G+ T V A +
Sbjct: 147 DGGVYTALAVK------------NGGVIAWGDNYFGQ------------TTVPAEAQSGV 182
Query: 530 CRVACG--HSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACG 587
VA G HSL + G V G Y Q P + S V IA G
Sbjct: 183 DDVAGGIFHSLAL---KDGKVIAWGDNRYKQTTVPTE------------ALSGVSAIASG 227
Query: 588 SYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 646
++ L + +V WG R +PS V++ V SI G N A+
Sbjct: 228 EWYSLALKNG-KVIAWGS------------SRTAPSSVQS----GVSSIEAGPNAAYAL 269
>pdb|1X4U|A Chain A, Solution Structure Of The Fyve Domain From Human Fyve
Domain Containing 27 Isoform B Protein
Length = 84
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 660 CSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYR----VCDNCFNK 715
C+GC F+ K KR +C NCG FC C S K K+SM + R VC +C
Sbjct: 17 CTGCSATFSVLK-KRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQT 75
Query: 716 LRKT 719
L K+
Sbjct: 76 LSKS 79
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 655 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPN----KPYRVCD 710
+D C C F+ RK H+C +CG VFC SS P P+ +P RVCD
Sbjct: 9 IDSDACMICSKKFSLLNRK-HHCRSCGGVFCQEHSSNS------IPLPDLGIYEPVRVCD 61
Query: 711 NCFN 714
+CF
Sbjct: 62 SCFE 65
>pdb|1WFK|A Chain A, Fyve Domain Of Fyve Domain Containing 19 Protein From Mus
Musculus
Length = 88
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 657 QSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKL 716
+S C GC + F FK K + C NCG FC+ C S +L N +VC C L
Sbjct: 9 ESRCYGCAVKFTLFK-KEYGCKNCGRAFCNGCLSFSALVPRAG---NTQQKVCKQCHTIL 64
Query: 717 RK 718
+
Sbjct: 65 TR 66
>pdb|2ZET|C Chain C, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|D Chain D, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 153
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 655 VDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNC 712
++++ C+ C P+ R C C L C SCS +P + +CD C
Sbjct: 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---------HPEEQGWLCDPC 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,357,521
Number of Sequences: 62578
Number of extensions: 997894
Number of successful extensions: 2231
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1964
Number of HSP's gapped (non-prelim): 69
length of query: 885
length of database: 14,973,337
effective HSP length: 107
effective length of query: 778
effective length of database: 8,277,491
effective search space: 6439887998
effective search space used: 6439887998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)