Query 002748
Match_columns 885
No_of_seqs 710 out of 2960
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:19:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 1.2E-46 2.6E-51 411.8 30.4 364 255-648 62-464 (476)
2 KOG1427 Uncharacterized conser 100.0 7E-41 1.5E-45 343.7 19.9 362 258-649 17-399 (443)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 3.6E-39 7.9E-44 353.2 27.7 340 239-596 101-464 (476)
4 KOG1427 Uncharacterized conser 100.0 6.2E-37 1.3E-41 314.7 16.4 311 253-597 69-399 (443)
5 KOG0783 Uncharacterized conser 99.9 6.2E-26 1.3E-30 257.7 15.6 307 254-599 135-451 (1267)
6 KOG0783 Uncharacterized conser 99.9 2.2E-25 4.7E-30 253.3 14.2 271 318-607 137-417 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 1.4E-20 3E-25 219.9 24.0 344 257-645 494-891 (3738)
8 cd01248 PH_PLC Phospholipase C 99.8 2.3E-20 5E-25 176.1 9.8 104 17-120 2-115 (115)
9 KOG1428 Inhibitor of type V ad 99.8 1.6E-18 3.4E-23 203.0 22.5 250 303-574 568-870 (3738)
10 PF12814 Mcp5_PH: Meiotic cell 99.7 1.9E-17 4E-22 157.8 12.6 107 14-123 2-123 (123)
11 KOG0169 Phosphoinositide-speci 99.3 1.3E-13 2.8E-18 160.0 -1.0 135 14-166 10-149 (746)
12 PF01363 FYVE: FYVE zinc finge 99.3 8E-13 1.7E-17 113.0 1.0 68 649-717 1-68 (69)
13 smart00064 FYVE Protein presen 99.1 3.3E-11 7.2E-16 102.7 3.6 66 649-717 2-67 (68)
14 PF00415 RCC1: Regulator of ch 99.1 3.7E-11 8E-16 96.2 3.6 50 597-646 1-51 (51)
15 KOG1264 Phospholipase C [Lipid 99.1 8.4E-12 1.8E-16 143.3 -0.4 120 6-125 6-134 (1267)
16 KOG0941 E3 ubiquitin protein l 99.1 1E-12 2.2E-17 153.3 -9.6 189 294-547 4-198 (850)
17 PTZ00303 phosphatidylinositol 99.0 1.5E-10 3.2E-15 132.3 3.8 75 646-720 448-533 (1374)
18 PF00415 RCC1: Regulator of ch 99.0 4.8E-10 1.1E-14 89.7 5.3 50 322-371 1-51 (51)
19 KOG1729 FYVE finger containing 99.0 1.2E-10 2.6E-15 124.9 1.3 68 647-718 158-226 (288)
20 KOG1818 Membrane trafficking a 99.0 2E-10 4.4E-15 132.7 2.2 64 656-722 164-227 (634)
21 KOG1819 FYVE finger-containing 98.9 2.7E-10 5.8E-15 124.8 1.0 72 641-715 885-961 (990)
22 KOG0941 E3 ubiquitin protein l 98.8 1.4E-10 3.1E-15 135.7 -7.5 182 410-598 13-197 (850)
23 PF13540 RCC1_2: Regulator of 98.8 8.4E-09 1.8E-13 73.0 4.3 30 581-610 1-30 (30)
24 PF13540 RCC1_2: Regulator of 98.7 1.8E-08 4E-13 71.3 4.8 30 306-335 1-30 (30)
25 cd00065 FYVE FYVE domain; Zinc 98.7 7.9E-09 1.7E-13 84.8 2.6 55 657-714 2-56 (57)
26 KOG1842 FYVE finger-containing 98.3 8E-08 1.7E-12 105.4 -1.9 71 650-721 173-263 (505)
27 cd01244 PH_RasGAP_CG9209 RAS_G 98.1 3.5E-05 7.6E-10 70.5 11.0 87 23-119 3-97 (98)
28 KOG1841 Smad anchor for recept 98.0 1.2E-06 2.6E-11 105.4 0.8 62 647-712 547-608 (1287)
29 KOG2999 Regulator of Rac1, req 97.9 1E-06 2.2E-11 99.3 -2.1 111 14-124 533-662 (713)
30 KOG1409 Uncharacterized conser 97.9 2.8E-06 6E-11 91.2 1.1 84 636-721 256-354 (404)
31 cd01235 PH_SETbf Set binding f 97.9 0.00014 3.1E-09 66.6 11.3 93 26-121 4-101 (101)
32 cd01236 PH_outspread Outspread 97.8 0.00018 4E-09 66.5 9.8 79 30-119 19-102 (104)
33 KOG1843 Uncharacterized conser 97.7 1.1E-05 2.3E-10 88.3 1.3 69 647-716 150-218 (473)
34 cd01238 PH_Tec Tec pleckstrin 97.6 0.00034 7.3E-09 65.1 10.1 79 36-119 21-105 (106)
35 cd01233 Unc104 Unc-104 pleckst 97.6 0.00042 9.1E-09 63.7 9.9 93 21-122 3-99 (100)
36 cd01264 PH_melted Melted pleck 97.5 0.00058 1.3E-08 62.7 9.5 75 37-119 20-99 (101)
37 cd01265 PH_PARIS-1 PARIS-1 ple 97.5 0.00088 1.9E-08 61.0 10.8 83 25-120 3-93 (95)
38 PF00169 PH: PH domain; Inter 97.4 0.0018 3.9E-08 58.4 11.4 89 26-121 6-103 (104)
39 cd01266 PH_Gab Gab (Grb2-assoc 97.3 0.0015 3.3E-08 60.9 10.2 80 36-120 19-107 (108)
40 smart00233 PH Pleckstrin homol 97.3 0.0019 4.2E-08 57.2 10.4 90 22-121 3-101 (102)
41 cd01251 PH_centaurin_alpha Cen 97.2 0.004 8.7E-08 57.6 11.1 90 26-123 4-102 (103)
42 cd01220 PH_CDEP Chondrocyte-de 97.2 0.0035 7.6E-08 57.5 10.4 89 20-122 2-98 (99)
43 cd01219 PH_FGD FGD (faciogenit 97.1 0.0047 1E-07 56.9 10.6 89 20-122 2-100 (101)
44 cd01247 PH_GPBP Goodpasture an 97.0 0.0062 1.4E-07 55.0 10.3 79 26-119 4-90 (91)
45 cd01256 PH_dynamin Dynamin ple 96.8 0.0054 1.2E-07 55.0 7.8 72 33-117 16-101 (110)
46 cd00821 PH Pleckstrin homology 96.8 0.0074 1.6E-07 52.8 8.8 75 34-119 14-95 (96)
47 KOG4424 Predicted Rho/Rac guan 96.8 0.00052 1.1E-08 78.7 1.4 68 654-724 412-479 (623)
48 cd01246 PH_oxysterol_bp Oxyste 96.7 0.017 3.6E-07 51.4 10.1 78 27-119 5-90 (91)
49 cd01257 PH_IRS Insulin recepto 96.5 0.028 6.1E-07 51.8 11.0 74 36-119 14-100 (101)
50 cd01250 PH_centaurin Centaurin 96.5 0.026 5.6E-07 50.5 10.5 73 34-118 14-92 (94)
51 PF15409 PH_8: Pleckstrin homo 96.5 0.022 4.7E-07 51.1 9.4 79 27-119 3-87 (89)
52 cd01260 PH_CNK Connector enhan 96.4 0.03 6.5E-07 50.8 10.1 72 35-119 19-95 (96)
53 cd00900 PH-like Pleckstrin hom 95.9 0.081 1.8E-06 46.4 10.5 74 34-119 17-98 (99)
54 cd01218 PH_phafin2 Phafin2 Pl 95.8 0.086 1.9E-06 48.8 10.2 88 22-123 6-100 (104)
55 cd01252 PH_cytohesin Cytohesin 95.8 0.093 2E-06 50.2 10.8 87 26-125 5-117 (125)
56 cd01261 PH_SOS Son of Sevenles 95.7 0.091 2E-06 49.3 10.1 93 19-123 3-111 (112)
57 KOG2059 Ras GTPase-activating 95.7 0.02 4.3E-07 67.4 6.7 98 21-128 565-671 (800)
58 PF15413 PH_11: Pleckstrin hom 95.3 0.12 2.7E-06 48.5 9.6 93 26-119 4-111 (112)
59 cd01241 PH_Akt Akt pleckstrin 95.0 0.15 3.3E-06 47.0 9.1 92 21-120 2-101 (102)
60 cd01245 PH_RasGAP_CG5898 RAS G 94.9 0.21 4.4E-06 45.8 9.5 74 37-119 17-97 (98)
61 PF11725 AvrE: Pathogenicity f 94.8 1 2.2E-05 58.4 18.2 252 357-649 490-814 (1774)
62 KOG1265 Phospholipase C [Lipid 94.4 0.17 3.6E-06 61.2 9.5 107 17-125 13-138 (1189)
63 PF08458 PH_2: Plant pleckstri 94.0 0.72 1.6E-05 42.8 10.9 97 25-126 1-108 (110)
64 cd01254 PH_PLD Phospholipase D 94.0 0.5 1.1E-05 45.0 10.3 82 36-119 33-120 (121)
65 KOG1811 Predicted Zn2+-binding 92.8 0.012 2.6E-07 67.6 -3.2 65 648-715 313-382 (1141)
66 KOG0230 Phosphatidylinositol-4 92.6 0.069 1.5E-06 67.9 2.7 51 657-721 5-55 (1598)
67 cd01222 PH_clg Clg (common-sit 91.5 1.4 3.1E-05 40.3 9.1 35 87-121 58-95 (97)
68 PF02318 FYVE_2: FYVE-type zin 91.4 0.15 3.2E-06 48.5 2.8 52 656-716 53-104 (118)
69 cd01232 PH_TRIO Trio pleckstri 89.9 1.5 3.2E-05 41.4 8.0 91 21-122 6-113 (114)
70 KOG0943 Predicted ubiquitin-pr 88.5 0.069 1.5E-06 65.5 -2.3 130 303-440 373-507 (3015)
71 cd01242 PH_ROK Rok (Rho- assoc 88.1 3.9 8.5E-05 38.1 9.1 84 36-121 19-110 (112)
72 PLN02153 epithiospecifier prot 87.6 53 0.0011 36.8 24.5 16 590-605 307-322 (341)
73 cd01253 PH_beta_spectrin Beta- 87.3 6.2 0.00013 36.1 10.3 34 86-119 69-103 (104)
74 PF11725 AvrE: Pathogenicity f 86.3 1.9 4.1E-05 56.2 8.1 72 526-598 743-815 (1774)
75 KOG3551 Syntrophins (type beta 83.5 2.6 5.5E-05 47.0 6.5 108 11-121 145-271 (506)
76 KOG3723 PH domain protein Melt 82.9 0.68 1.5E-05 53.6 1.9 83 37-128 755-843 (851)
77 KOG0943 Predicted ubiquitin-pr 82.6 0.16 3.5E-06 62.5 -3.2 128 355-501 373-504 (3015)
78 cd01240 PH_beta-ARK Beta adren 82.5 2.5 5.4E-05 39.1 5.0 79 37-126 21-103 (116)
79 cd01237 Unc112 Unc-112 pleckst 82.0 13 0.00029 34.5 9.7 72 36-119 20-101 (106)
80 KOG3669 Uncharacterized conser 81.9 53 0.0011 39.0 16.3 108 363-499 190-299 (705)
81 KOG3669 Uncharacterized conser 81.2 13 0.00029 43.7 11.3 107 311-435 190-299 (705)
82 PTZ00267 NIMA-related protein 80.8 4.6 9.9E-05 47.7 8.1 88 25-121 381-476 (478)
83 KOG0315 G-protein beta subunit 80.5 88 0.0019 33.6 16.4 61 534-605 134-196 (311)
84 cd01228 PH_BCR-related BCR (br 79.9 7.7 0.00017 35.2 7.1 81 21-121 3-94 (96)
85 KOG1090 Predicted dual-specifi 77.6 1.6 3.6E-05 53.6 2.9 76 37-121 1651-1731(1732)
86 cd01223 PH_Vav Vav pleckstrin 75.8 23 0.0005 33.5 9.3 101 21-123 5-113 (116)
87 PF02183 HALZ: Homeobox associ 74.0 3.3 7.2E-05 32.3 2.8 25 860-884 14-38 (45)
88 cd01227 PH_Dbs Dbs (DBL's big 73.4 28 0.00062 33.8 9.6 41 85-125 77-119 (133)
89 PHA03098 kelch-like protein; P 73.3 1.4E+02 0.0029 35.8 17.8 17 366-383 335-351 (534)
90 cd01239 PH_PKD Protein kinase 72.6 42 0.00092 31.6 10.1 86 26-118 5-115 (117)
91 PHA02713 hypothetical protein; 72.0 88 0.0019 37.9 15.8 20 364-383 341-360 (557)
92 KOG4424 Predicted Rho/Rac guan 71.9 6.3 0.00014 46.3 5.6 111 12-128 264-376 (623)
93 cd01221 PH_ephexin Ephexin Ple 71.9 24 0.00052 33.8 8.6 85 31-118 22-119 (125)
94 KOG4693 Uncharacterized conser 71.2 1.2E+02 0.0026 32.8 14.2 25 365-390 80-104 (392)
95 KOG0230 Phosphatidylinositol-4 71.1 2.3 5E-05 54.8 2.1 58 652-721 92-149 (1598)
96 COG4257 Vgb Streptogramin lyas 70.6 36 0.00078 37.0 10.4 137 253-435 65-205 (353)
97 PHA03098 kelch-like protein; P 70.2 2.3E+02 0.005 33.8 18.9 16 421-437 335-350 (534)
98 PRK03564 formate dehydrogenase 68.6 3 6.4E-05 46.2 2.0 75 637-721 192-267 (309)
99 TIGR01562 FdhE formate dehydro 68.5 2.8 6E-05 46.4 1.8 75 637-721 189-267 (305)
100 KOG1274 WD40 repeat protein [G 68.4 69 0.0015 40.0 13.4 71 364-440 14-88 (933)
101 KOG1729 FYVE finger containing 67.0 1.8 3.9E-05 47.4 -0.1 65 650-715 13-81 (288)
102 cd01259 PH_Apbb1ip Apbb1ip (Am 66.6 36 0.00077 32.0 8.2 91 23-121 3-108 (114)
103 PF15406 PH_6: Pleckstrin homo 65.6 16 0.00034 34.0 5.7 49 57-119 63-111 (112)
104 cd01230 PH_EFA6 EFA6 Pleckstri 65.1 56 0.0012 31.0 9.6 39 85-123 74-113 (117)
105 PLN02153 epithiospecifier prot 63.4 2.5E+02 0.0054 31.4 25.0 17 366-383 130-146 (341)
106 KOG0646 WD40 repeat protein [G 63.3 2.1E+02 0.0046 33.2 15.1 67 357-436 83-151 (476)
107 KOG2106 Uncharacterized conser 62.5 3.2E+02 0.0069 32.3 21.1 89 306-434 214-303 (626)
108 KOG4441 Proteins containing BT 62.5 94 0.002 37.8 13.3 56 541-605 471-530 (571)
109 cd01224 PH_Collybistin Collybi 62.3 73 0.0016 29.9 9.5 84 27-118 8-104 (109)
110 PF07569 Hira: TUP1-like enhan 61.5 27 0.00059 36.8 7.6 28 356-383 13-40 (219)
111 PF05191 ADK_lid: Adenylate ki 60.4 4 8.7E-05 30.3 0.8 34 675-720 2-35 (36)
112 PF14593 PH_3: PH domain; PDB: 60.0 85 0.0018 29.2 9.6 89 20-124 6-102 (104)
113 TIGR03547 muta_rot_YjhT mutatr 58.8 1.8E+02 0.004 32.4 14.3 15 539-553 315-329 (346)
114 KOG4441 Proteins containing BT 58.2 1E+02 0.0022 37.5 12.6 53 493-553 475-530 (571)
115 PRK14131 N-acetylneuraminic ac 57.9 2.6E+02 0.0057 31.8 15.5 18 421-438 131-148 (376)
116 cd01249 PH_oligophrenin Oligop 57.8 18 0.0004 33.5 4.7 37 82-118 64-102 (104)
117 PF07569 Hira: TUP1-like enhan 57.1 43 0.00092 35.4 8.1 76 305-383 14-95 (219)
118 PF15404 PH_4: Pleckstrin homo 56.8 78 0.0017 32.6 9.6 19 101-119 165-183 (185)
119 PRK14131 N-acetylneuraminic ac 54.4 3.7E+02 0.0081 30.5 17.1 18 366-383 131-148 (376)
120 PHA02790 Kelch-like protein; P 52.9 1.5E+02 0.0033 35.1 12.8 14 370-383 314-327 (480)
121 cd01263 PH_anillin Anillin Ple 52.6 93 0.002 29.8 8.8 17 102-118 104-120 (122)
122 KOG0278 Serine/threonine kinas 52.2 1.8E+02 0.0039 31.4 11.4 38 345-383 134-173 (334)
123 KOG3576 Ovo and related transc 52.1 3.6 7.7E-05 42.1 -0.9 31 655-686 115-157 (267)
124 KOG0930 Guanine nucleotide exc 50.7 88 0.0019 33.9 9.0 85 24-123 263-377 (395)
125 PF04216 FdhE: Protein involve 50.5 4.6 9.9E-05 44.5 -0.4 74 637-720 177-252 (290)
126 KOG1900 Nuclear pore complex, 50.2 7.5E+02 0.016 32.8 21.2 217 317-553 93-339 (1311)
127 KOG0993 Rab5 GTPase effector R 46.8 1.3 2.8E-05 49.4 -5.2 64 650-718 461-526 (542)
128 KOG0649 WD40 repeat protein [G 46.2 2.8E+02 0.0061 29.9 11.6 46 412-458 64-110 (325)
129 COG3074 Uncharacterized protei 45.6 17 0.00037 30.7 2.3 25 860-884 27-51 (79)
130 cd01243 PH_MRCK MRCK (myotonic 43.9 94 0.002 29.6 7.1 84 36-121 19-119 (122)
131 PF15135 UPF0515: Uncharacteri 43.8 21 0.00046 37.8 3.2 35 651-685 126-166 (278)
132 TIGR03548 mutarot_permut cycli 43.1 4.9E+02 0.011 28.7 15.5 17 590-606 216-232 (323)
133 PHA02713 hypothetical protein; 39.6 3.1E+02 0.0068 33.2 12.8 10 493-502 351-360 (557)
134 PF04841 Vps16_N: Vps16, N-ter 39.3 6.6E+02 0.014 29.1 19.3 69 305-381 82-153 (410)
135 TIGR01063 gyrA DNA gyrase, A s 39.2 9.3E+02 0.02 30.7 22.3 121 310-444 543-674 (800)
136 smart00706 TECPR Beta propelle 37.8 48 0.001 23.9 3.4 24 412-435 9-33 (35)
137 TIGR00622 ssl1 transcription f 37.8 23 0.0005 33.2 2.1 33 657-689 55-96 (112)
138 PRK00464 nrdR transcriptional 36.5 18 0.0004 36.0 1.4 12 673-684 27-38 (154)
139 PF07975 C1_4: TFIIH C1-like d 35.7 10 0.00022 30.4 -0.4 29 660-688 2-35 (51)
140 PF06698 DUF1192: Protein of u 35.6 65 0.0014 26.8 4.2 30 853-882 16-45 (59)
141 KOG0315 G-protein beta subunit 33.9 6.5E+02 0.014 27.3 21.6 62 362-437 133-196 (311)
142 smart00706 TECPR Beta propelle 33.8 75 0.0016 22.9 3.9 25 356-380 8-33 (35)
143 PLN00188 enhanced disease resi 33.2 1.3E+02 0.0028 37.2 7.9 96 25-125 8-113 (719)
144 KOG0646 WD40 repeat protein [G 32.6 8.7E+02 0.019 28.5 15.8 157 243-436 85-245 (476)
145 KOG0291 WD40-repeat-containing 32.1 1.1E+03 0.024 29.5 20.9 112 253-385 311-424 (893)
146 COG5570 Uncharacterized small 31.3 42 0.0009 26.9 2.3 25 857-881 32-56 (57)
147 cd01231 PH_Lnk LNK-family Plec 30.1 2.2E+02 0.0047 26.4 6.9 61 52-119 45-106 (107)
148 KOG0705 GTPase-activating prot 29.8 49 0.0011 39.3 3.5 41 84-124 441-482 (749)
149 COG2888 Predicted Zn-ribbon RN 29.7 28 0.00061 28.7 1.2 36 657-692 9-45 (61)
150 KOG3799 Rab3 effector RIM1 and 29.6 20 0.00043 34.3 0.3 52 656-715 64-116 (169)
151 KOG0320 Predicted E3 ubiquitin 28.2 9.7 0.00021 38.4 -2.1 48 658-718 132-179 (187)
152 PF15410 PH_9: Pleckstrin homo 28.1 1.8E+02 0.0038 27.5 6.5 36 85-120 81-117 (119)
153 KOG1900 Nuclear pore complex, 27.8 5.6E+02 0.012 33.9 12.3 159 424-612 93-278 (1311)
154 PF04762 IKI3: IKI3 family; I 27.0 1.5E+03 0.032 29.4 18.1 203 355-603 426-636 (928)
155 KOG0291 WD40-repeat-containing 26.8 1.3E+03 0.029 28.8 26.0 120 306-440 300-424 (893)
156 PF04841 Vps16_N: Vps16, N-ter 26.2 1.1E+03 0.023 27.4 16.5 25 579-603 217-243 (410)
157 PRK13979 DNA topoisomerase IV 26.1 1.6E+03 0.034 29.3 25.5 115 314-440 517-641 (957)
158 PHA02790 Kelch-like protein; P 26.0 4.5E+02 0.0097 31.1 10.9 15 369-383 357-371 (480)
159 KOG2164 Predicted E3 ubiquitin 25.6 25 0.00055 41.0 0.3 52 657-718 186-237 (513)
160 PF09538 FYDLN_acid: Protein o 25.6 36 0.00078 31.8 1.3 26 659-684 11-36 (108)
161 PF10168 Nup88: Nuclear pore c 25.1 1.4E+03 0.031 28.6 18.1 121 258-380 39-176 (717)
162 PF12341 DUF3639: Protein of u 24.3 1.4E+02 0.003 20.9 3.6 25 578-602 1-25 (27)
163 PF12341 DUF3639: Protein of u 24.3 1.6E+02 0.0036 20.5 3.9 24 410-433 1-24 (27)
164 PRK05560 DNA gyrase subunit A; 23.6 1.6E+03 0.035 28.6 22.3 119 310-440 545-672 (805)
165 TIGR02300 FYDLN_acid conserved 23.3 44 0.00096 32.0 1.4 26 659-684 11-36 (129)
166 PRK00420 hypothetical protein; 23.1 50 0.0011 31.1 1.7 26 658-683 24-49 (112)
167 KOG2932 E3 ubiquitin ligase in 23.0 26 0.00057 38.2 -0.2 50 656-721 89-138 (389)
168 KOG1034 Transcriptional repres 22.4 2.1E+02 0.0046 32.0 6.4 56 257-330 325-382 (385)
169 KOG0649 WD40 repeat protein [G 22.3 1E+03 0.022 25.8 19.5 116 253-381 24-142 (325)
170 KOG1034 Transcriptional repres 21.5 1.7E+02 0.0037 32.7 5.5 58 317-382 323-382 (385)
171 KOG3751 Growth factor receptor 21.4 3E+02 0.0065 32.7 7.7 92 23-124 320-427 (622)
172 COG4257 Vgb Streptogramin lyas 21.4 7.6E+02 0.017 27.3 10.2 140 363-551 61-205 (353)
173 PF06739 SBBP: Beta-propeller 21.3 88 0.0019 23.3 2.4 19 537-555 15-33 (38)
174 KOG1408 WD40 repeat protein [F 21.1 1.5E+02 0.0033 36.2 5.4 103 309-436 138-247 (1080)
175 PF07304 SRA1: Steroid recepto 20.9 18 0.0004 36.1 -1.8 28 100-127 114-141 (157)
176 KOG0293 WD40 repeat-containing 20.9 1.3E+03 0.029 26.7 12.9 68 356-436 396-468 (519)
177 PF15411 PH_10: Pleckstrin hom 20.8 1.3E+02 0.0028 28.5 4.0 48 59-117 65-116 (116)
178 TIGR02159 PA_CoA_Oxy4 phenylac 20.7 31 0.00066 34.1 -0.2 39 633-671 106-144 (146)
179 PRK00432 30S ribosomal protein 20.3 59 0.0013 26.0 1.3 26 659-684 22-47 (50)
180 smart00340 HALZ homeobox assoc 20.2 1.1E+02 0.0023 23.6 2.6 19 861-879 15-33 (44)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.2e-46 Score=411.84 Aligned_cols=364 Identities=25% Similarity=0.480 Sum_probs=295.1
Q ss_pred eecCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceeeccc--CCCCEEEEEecCCeEEEEEcCCcEEEEeCCC
Q 002748 255 DDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESA--VVLDVQNIACGGRHAALVNKQGEVFSWGEES 332 (885)
Q Consensus 255 ~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 332 (885)
.....-.+||+||.|. .++||.|.+. +.+..|..+... ....|++++||+.|+++|+.||.||+||.|.
T Consensus 62 ~~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~ 132 (476)
T COG5184 62 HLLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDND 132 (476)
T ss_pred hhhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCc
Confidence 4577889999999999 9999999843 336778877766 4568999999999999999999999999999
Q ss_pred CCCcCCCCC----------------CCccccEEeec----cCCCcEEEEeecCcEEEEEEcCCcEEEEcCCCCCCcccCC
Q 002748 333 GGRLGHGVD----------------SDVLHPKLIDA----LSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGH 392 (885)
Q Consensus 333 ~GqLG~g~~----------------~~~~~P~~V~~----l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~ 392 (885)
.|+||.... .....|..|.. ....+|++++||++++++|+++|+||.||.+ ..+.++.
T Consensus 133 ~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~--r~~e~~~ 210 (476)
T COG5184 133 DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTF--RCGELGQ 210 (476)
T ss_pred ccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCc--ccccccc
Confidence 999998661 12567888875 2234899999999999999999999999998 4455555
Q ss_pred CCCc------ceeeeeeecCCCCCceEEEEeeCCceEEEEecCCeEEEeecCCCcccCCCCCcccccceeeeccCCC-eE
Q 002748 393 GNEV------SHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGL-RT 465 (885)
Q Consensus 393 g~~~------~~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~-~I 465 (885)
+... .+++|.++. ...|+++++|.+|.++|+++|+||+||+|.+||||....+....+..+..+-.. .|
T Consensus 211 g~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i 286 (476)
T COG5184 211 GSYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNI 286 (476)
T ss_pred ccccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhh
Confidence 5222 234555543 347999999999999999999999999999999999877766666555433222 36
Q ss_pred EEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCCCCCCC----CceeecEEeeccCCCCeEEEEecCCEEEE
Q 002748 466 VRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDK----EAKLVPTCVAALVEPNFCRVACGHSLTVA 541 (885)
Q Consensus 466 ~~VacG~~ht~alte~~~~~s~~~~~~~G~vy~WG~n~~GQLG~g~~----~~~~~P~~V~~l~~~~I~~Ia~G~~ht~a 541 (885)
..|+||.+|++||. .+|++|+||.|-+||||.+.. .....|+....+.+..|..|++|..|+++
T Consensus 287 ~~vacG~~h~~al~------------~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~ 354 (476)
T COG5184 287 KYVACGKDHSLALD------------EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLI 354 (476)
T ss_pred hhcccCcceEEEEc------------CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEE
Confidence 88999999999998 599999999999999999821 12345666666777789999999999999
Q ss_pred EecCCeEEEEeCCCCCcCCCCCCCC---CCCeeeccccCCCcEEEEEecCCceeeeecCCeEEEecCCCCCCCCCCCCC-
Q 002748 542 LTTSGHVYTMGSPVYGQLGNPQADG---KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTD- 617 (885)
Q Consensus 542 Lt~dG~Vy~wG~N~~GQLG~~~~~~---~~p~~v~~~l~~~~I~~Ia~G~~Ht~aLt~~G~Vy~WG~n~~GQLG~g~~~- 617 (885)
|..+|.||+||.++.+|||.+.... ..|..+. ....+.+|+||..|.++.+.+|+||.||+|++|+||.|+..
T Consensus 355 L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls---~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~ 431 (476)
T COG5184 355 LRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS---VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEA 431 (476)
T ss_pred EecCceEEEecCCccccccCcccceeecCCccccc---cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhh
Confidence 9999999999999999999987432 1222222 13459999999999999999999999999999999999765
Q ss_pred CCCcCEEecc--cCCCcEEEEEcCCCccceeee
Q 002748 618 DRNSPSLVEA--LKDKQVKSIACGTNFTAAICL 648 (885)
Q Consensus 618 ~~~~P~~V~~--l~~~~V~~IacG~~hT~al~~ 648 (885)
+...|+++.. +....++..-||.++++..-.
T Consensus 432 ~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~ 464 (476)
T COG5184 432 DVLVPTLIRQPLLSGHNIILAGYGNQFSVIEET 464 (476)
T ss_pred hccccccccccccCCCceEEeccCcceEEEecc
Confidence 4567888873 677778888888888776643
No 2
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=7e-41 Score=343.69 Aligned_cols=362 Identities=25% Similarity=0.455 Sum_probs=301.9
Q ss_pred CCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceeecccCCCCEEEEEec--CCeEEEEEcCCcEEEEeCCCCCC
Q 002748 258 DALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACG--GRHAALVNKQGEVFSWGEESGGR 335 (885)
Q Consensus 258 ~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G--~~hs~~Lt~dG~Vy~wG~N~~Gq 335 (885)
..-|++...|... -.+.|.-+- .......-|.++..+.+.+|..|+.| ..|+++|+-+|+.|.||.|..||
T Consensus 17 ~~~g~ml~~g~v~-wd~tgkRd~------~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQ 89 (443)
T KOG1427|consen 17 EKGGEMLFCGAVA-WDITGKRDG------AMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQ 89 (443)
T ss_pred cCCccEEEeccch-hhhhccccc------ccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCc
Confidence 3457788888776 555554331 11235678999999999999999988 67999999999999999999999
Q ss_pred cCCCCCCCccccEEeeccCCCcEEEEeecCcEEEEEEcCCcEEEEcCCCCCCcccCCCCCcce-eeeeeecCCCCCceEE
Q 002748 336 LGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSH-WVPKRVNGPLEGIHVS 414 (885)
Q Consensus 336 LG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~g~~~~~-~~P~~v~~~l~~~~Iv 414 (885)
||+++......|+.|..|...+|++.+||++|+++||++|.+|.+|.| .+||||.++.... ..|..+. ..+..|+
T Consensus 90 LGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeN--K~GQlGlgn~~~~v~s~~~~~--~~~~~v~ 165 (443)
T KOG1427|consen 90 LGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGEN--KYGQLGLGNAKNEVESTPLPC--VVSDEVT 165 (443)
T ss_pred cCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccc--ccccccccccccccccCCCcc--ccCccce
Confidence 999998899999999999999999999999999999999999999999 6799999986542 2222221 2345799
Q ss_pred EEeeCCceEEEEecCCeEEEeecCCCcccCCCCCcc--------------cccceeeeccCCCeEEEEEeCCceEEEEEE
Q 002748 415 SISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKS--------------VSIPREVESLKGLRTVRAACGVWHTAAVVE 480 (885)
Q Consensus 415 ~IacG~~ht~aLt~~G~Vy~wG~n~~GQLG~g~~~~--------------~~~P~~V~~l~~~~I~~VacG~~ht~alte 480 (885)
.|+||..+++.|+..+.|.++|...||||||+.... .+.|.-|..+.++.|++++||.+||+|+.
T Consensus 166 ~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd- 244 (443)
T KOG1427|consen 166 NVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVD- 244 (443)
T ss_pred eeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeec-
Confidence 999999999999999999999999999999985432 34577778889999999999999999998
Q ss_pred eeecCCCccccCCCcEEEEeCCCCCCCCCCCCCceeecEEeeccCC--CCeEEEEecCCEEEEEecCCeEEEEeCCCCCc
Q 002748 481 VMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVE--PNFCRVACGHSLTVALTTSGHVYTMGSPVYGQ 558 (885)
Q Consensus 481 ~~~~~s~~~~~~~G~vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~--~~I~~Ia~G~~ht~aLt~dG~Vy~wG~N~~GQ 558 (885)
++++||+||.+.||+|||...++...|..+..+.- .--.++.||+..++++.+-|.+|.||.+..
T Consensus 245 -----------~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~-- 311 (443)
T KOG1427|consen 245 -----------KNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN-- 311 (443)
T ss_pred -----------CCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc--
Confidence 59999999999999999999999999998876643 335789999999999999999999997653
Q ss_pred CCCCCCCCCCCeeeccccCCCcEEEEEecCCceeeeecCCeEEEecCCCCCCCCCCC--CCCCCcCEEecccCCCcEEEE
Q 002748 559 LGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGD--TDDRNSPSLVEALKDKQVKSI 636 (885)
Q Consensus 559 LG~~~~~~~~p~~v~~~l~~~~I~~Ia~G~~Ht~aLt~~G~Vy~WG~n~~GQLG~g~--~~~~~~P~~V~~l~~~~V~~I 636 (885)
...+..+|.++.+ +.+..+..+.||..|.++ ..|.....||...+|.++-|. +.....|..|..+.+.+|..|
T Consensus 312 ---~ge~~mypkP~~d-lsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~V 386 (443)
T KOG1427|consen 312 ---NGEDWMYPKPMMD-LSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGV 386 (443)
T ss_pred ---CcccccCCCchhh-cCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchhcceeccce
Confidence 3345567777774 677889999999999876 456689999998877765443 334567999999999999999
Q ss_pred EcCCCccceeeee
Q 002748 637 ACGTNFTAAICLH 649 (885)
Q Consensus 637 acG~~hT~al~~~ 649 (885)
+||..|+++|+..
T Consensus 387 amGysHs~vivd~ 399 (443)
T KOG1427|consen 387 AMGYSHSMVIVDR 399 (443)
T ss_pred eeccceEEEEEcc
Confidence 9999999999743
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.6e-39 Score=353.18 Aligned_cols=340 Identities=25% Similarity=0.431 Sum_probs=266.8
Q ss_pred EeecccccccCCCCcceecCCCCcEEEEcCCCCCCccCCCCCC-------CCccccccccCCCceeecc----cCCCCEE
Q 002748 239 VSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGLNR-------VGSCFGVKMDSSLPKALES----AVVLDVQ 307 (885)
Q Consensus 239 ~~~~s~~s~~s~G~~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~-------~~~~~~~~~~~~~P~~v~~----~~~~~I~ 307 (885)
.+..+.+....+|.+..+++.+|+||+||.|. .|+||.-... .........-...|..|+. ...++|+
T Consensus 101 ~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~-~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv 179 (476)
T COG5184 101 IDKASIIKIACGGNHSLGLDHDGNLYSWGDND-DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVV 179 (476)
T ss_pred ccceeeEEeecCCceEEeecCCCCEEEeccCc-ccccccccccccccccccccccchhhcccCCceeeccccccCChheE
Confidence 34444444445556889999999999999999 9999975510 0000112234577888876 3345899
Q ss_pred EEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccc----cEEeeccCCCcEEEEeecCcEEEEEEcCCcEEEEcCC
Q 002748 308 NIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLH----PKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDG 383 (885)
Q Consensus 308 ~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~----P~~V~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n 383 (885)
+++||++++++|+++|+||+||....+.++.+...+... ++++... ...|+++++|.+|.++|+++|++|.||+|
T Consensus 180 ~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~ 258 (476)
T COG5184 180 KLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSN 258 (476)
T ss_pred EeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCC
Confidence 999999999999999999999999888888885443222 4444433 46899999999999999999999999999
Q ss_pred CCCCcccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCeEEEeecCCCcccCCCCC----cccccceeeec
Q 002748 384 TYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDR----KSVSIPREVES 459 (885)
Q Consensus 384 ~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GQLG~g~~----~~~~~P~~V~~ 459 (885)
..||||.........+..+..++.-..|+.|+||.+|+++|+++|+||+||.|-|||||.+.. .....|.....
T Consensus 259 --qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~ 336 (476)
T COG5184 259 --QKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQL 336 (476)
T ss_pred --cccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeecccccccc
Confidence 779999988777666666655444445899999999999999999999999999999999822 23456667777
Q ss_pred cCCCeEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCCCCCC--CCceeecEEeeccCCCCeEEEEecCC
Q 002748 460 LKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGD--KEAKLVPTCVAALVEPNFCRVACGHS 537 (885)
Q Consensus 460 l~~~~I~~VacG~~ht~alte~~~~~s~~~~~~~G~vy~WG~n~~GQLG~g~--~~~~~~P~~V~~l~~~~I~~Ia~G~~ 537 (885)
+.++.|..+++|..|+++|. .+|.||+||.++.+|||+.. ......|+++.. ..++.+|+||..
T Consensus 337 ~~~~~i~~is~ge~H~l~L~------------~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~--~~~~~~v~~gt~ 402 (476)
T COG5184 337 LSGVTICSISAGESHSLILR------------KDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSV--AIKLEQVACGTH 402 (476)
T ss_pred CCCceEEEEecCcceEEEEe------------cCceEEEecCCccccccCcccceeecCCcccccc--ccceEEEEecCc
Confidence 78888999999999999998 59999999999999999998 444445555442 367999999999
Q ss_pred EEEEEecCCeEEEEeCCCCCcCCCCCCCCC--CCeeeccc-cCCCcEEEEEecCCceeeeec
Q 002748 538 LTVALTTSGHVYTMGSPVYGQLGNPQADGK--LPNRVEGK-LSKSFVEEIACGSYHVAVLTS 596 (885)
Q Consensus 538 ht~aLt~dG~Vy~wG~N~~GQLG~~~~~~~--~p~~v~~~-l~~~~I~~Ia~G~~Ht~aLt~ 596 (885)
|+++.+.+|.||.||.+++|+||++..... .|..+..+ +....++..-||....++...
T Consensus 403 ~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~ 464 (476)
T COG5184 403 HNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEET 464 (476)
T ss_pred cceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCceEEeccCcceEEEecc
Confidence 999999999999999999999998775543 45555542 355567777777777776643
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=6.2e-37 Score=314.69 Aligned_cols=311 Identities=25% Similarity=0.444 Sum_probs=260.1
Q ss_pred cceecCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceeecccCCCCEEEEEecCCeEEEEEcCCcEEEEeCCC
Q 002748 253 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEES 332 (885)
Q Consensus 253 ~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 332 (885)
|..+|+-+|+.|.||.|. .||||+|+ ......|+.|+.+...+|++.+||++|+++||++|.||+||+|.
T Consensus 69 H~vli~megk~~~wGRNe-kGQLGhgD---------~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK 138 (443)
T KOG1427|consen 69 HCVLIDMEGKCYTWGRNE-KGQLGHGD---------MKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENK 138 (443)
T ss_pred hEEEEecccceeecccCc-cCccCccc---------hhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccc
Confidence 557899999999999999 99999997 35677899999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCC-ccccEEeeccCCCcEEEEeecCcEEEEEEcCCcEEEEcCCCCCCcccCCCCCcc--------------
Q 002748 333 GGRLGHGVDSD-VLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVS-------------- 397 (885)
Q Consensus 333 ~GqLG~g~~~~-~~~P~~V~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~g~~~~-------------- 397 (885)
+||||.+.... +..|.++. .....|..|+||..+++.|+..+.|.++|.. .+||||+++...
T Consensus 139 ~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~glp--~ygqlgh~td~~~~~~~~~~~~~~e~ 215 (443)
T KOG1427|consen 139 YGQLGLGNAKNEVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAGLP--QYGQLGHGTDNEFNMKDSSVRLAYEA 215 (443)
T ss_pred cccccccccccccccCCCcc-ccCccceeeccccceEEEeecccceeecCCc--cccccccCcchhhccccccceeeeec
Confidence 99999998654 33443333 3345899999999999999999999999999 779999997653
Q ss_pred eeeeeeecCCCCCceEEEEeeCCceEEEEecCCeEEEeecCCCcccCCCCCcccccceeeeccC--CCeEEEEEeCCceE
Q 002748 398 HWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLK--GLRTVRAACGVWHT 475 (885)
Q Consensus 398 ~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~--~~~I~~VacG~~ht 475 (885)
+..|..|. ++++++|++++||.+|+++++++++||+||.+-||.|||...+....|+.++.+. +.--..+.||+..+
T Consensus 216 ~pr~~~i~-~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~S 294 (443)
T KOG1427|consen 216 QPRPKAIA-SLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGS 294 (443)
T ss_pred CCCccccc-cccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccc
Confidence 22344443 4789999999999999999999999999999999999999999999999987653 44567889999999
Q ss_pred EEEEEeeecCCCccccCCCcEEEEeCCCCCCCCCCCCCceeecEEeeccCCCCeEEEEecCCEEEEEecCCeEEEEeCCC
Q 002748 476 AAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPV 555 (885)
Q Consensus 476 ~alte~~~~~s~~~~~~~G~vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht~aLt~dG~Vy~wG~N~ 555 (885)
+++.| -|.||.||.+.. ..+.-..|..+..+...++..+-||..|.++ ..|..+..||...
T Consensus 295 l~v~e------------~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~ 355 (443)
T KOG1427|consen 295 LNVAE------------GGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQ 355 (443)
T ss_pred eeecc------------cceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeeee-ccccccccccccc
Confidence 99885 899999998764 2345667888888888999999999888654 5666899999988
Q ss_pred CCcCCC-CC--CCCCCCeeeccccCCCcEEEEEecCCceeeeecC
Q 002748 556 YGQLGN-PQ--ADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSK 597 (885)
Q Consensus 556 ~GQLG~-~~--~~~~~p~~v~~~l~~~~I~~Ia~G~~Ht~aLt~~ 597 (885)
+|.++- ++ .....|..+. .+.+.+|.+|++|..|+++|..+
T Consensus 356 ~g~~lggp~~Qkss~~Pk~v~-~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 356 YGELLGGPNGQKSSAAPKKVD-MLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred ccccccCccccccccCccccc-hhcceeccceeeccceEEEEEcc
Confidence 876653 33 2334676665 46778899999999999999755
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=6.2e-26 Score=257.72 Aligned_cols=307 Identities=21% Similarity=0.319 Sum_probs=232.1
Q ss_pred ceecCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceeecccC--CCCEEEEEecCCeEEEEEcCCcEEEEeCC
Q 002748 254 HDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAV--VLDVQNIACGGRHAALVNKQGEVFSWGEE 331 (885)
Q Consensus 254 ~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~--~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N 331 (885)
+.+.|...|||.||.|. +..||+|+. .....|..|..+. +.-+.+|+.+..|++++++.|+||++|.+
T Consensus 135 ~~~~d~pndvy~wG~N~-N~tLGign~---------~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG 204 (1267)
T KOG0783|consen 135 HPVLDLPNDVYGWGTNV-NNTLGIGNG---------KEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG 204 (1267)
T ss_pred ccccCCccceeEecccc-cccccccCC---------CCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC
Confidence 34578889999999999 999999983 3556777776544 33488999999999999999999999999
Q ss_pred CCCCcCCCCCCCccccEEeeccCCCcEEEEeecCcEEEEEEcCCcEEEEcCCCCCCcccCCCCCcc-eeeeeeecCC-CC
Q 002748 332 SGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVS-HWVPKRVNGP-LE 409 (885)
Q Consensus 332 ~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~g~~~~-~~~P~~v~~~-l~ 409 (885)
.+|+||+|+......|++|+.|.+.+|.+|++...|+++||++|-||+||.| ..+|||..+... ...|..|... ++
T Consensus 205 ~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN--~~hqLG~~~~~~~~~~p~qI~a~r~k 282 (1267)
T KOG0783|consen 205 AGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLN--GSHQLGLSNDELKKDDPIQITARRIK 282 (1267)
T ss_pred CCCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecC--cccccCCcCchhhcCchhhhhhHhhc
Confidence 9999999999889999999999999999999999999999999999999999 779999876553 3344444321 22
Q ss_pred Cc-eEEEEeeCCceEEEEecCCeEEEeecCCCcccCCCCC-cccccceeeeccCCCeEEEEEeCCceEEEEEEeeecCCC
Q 002748 410 GI-HVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDR-KSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSS 487 (885)
Q Consensus 410 ~~-~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GQLG~g~~-~~~~~P~~V~~l~~~~I~~VacG~~ht~alte~~~~~s~ 487 (885)
+. .|+.|++|..|+++.|+. .||+||.| .||||..+. ..+..|+.+..+ ...|..|+|....|+++++
T Consensus 283 g~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~~~------- 352 (1267)
T KOG0783|consen 283 GFKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAGL-LSPVIHVVATTRATVCLLQ------- 352 (1267)
T ss_pred chhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhccc-ccceEEEEecCccEEEEec-------
Confidence 32 799999999999999965 79999998 699998765 456778766433 3478999999999999984
Q ss_pred ccccCCCcEEEEeCCCCCCCCCCCCCceeecEEeec----cCCCCeEEEEecCCEEEEEecCCeEEEEeCCCCCcCCCCC
Q 002748 488 SSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAA----LVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQ 563 (885)
Q Consensus 488 ~~~~~~G~vy~WG~n~~GQLG~g~~~~~~~P~~V~~----l~~~~I~~Ia~G~~ht~aLt~dG~Vy~wG~N~~GQLG~~~ 563 (885)
++.+|++-+-. |.-...+.....-..|.. +.-.++.+..+...-.++||+-|+||.|-++..- +-
T Consensus 353 -----~~~i~~~ady~--~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-~~--- 421 (1267)
T KOG0783|consen 353 -----NNSIIAFADYN--QVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-RT--- 421 (1267)
T ss_pred -----CCcEEEEeccc--ceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-ee---
Confidence 89999987633 222222222222222221 1113455666777778999999999999976431 10
Q ss_pred CCCCCCeeeccccCCCcEEEEEecCCceeeeecCCe
Q 002748 564 ADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTE 599 (885)
Q Consensus 564 ~~~~~p~~v~~~l~~~~I~~Ia~G~~Ht~aLt~~G~ 599 (885)
.-...|..+ ..|.+|+--.+..+++|.||.
T Consensus 422 ~c~ftp~r~------~~isdIa~~~N~~~~~t~dGc 451 (1267)
T KOG0783|consen 422 SCKFTPLRI------FEISDIAWTANSLILCTRDGC 451 (1267)
T ss_pred eeeccccee------eehhhhhhccceEEEEecCcc
Confidence 001123332 236788888899999999993
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.92 E-value=2.2e-25 Score=253.31 Aligned_cols=271 Identities=25% Similarity=0.420 Sum_probs=215.3
Q ss_pred EEEcCCcEEEEeCCCCCCcCCCCCCCccccEEeeccC--CCcEEEEeecCcEEEEEEcCCcEEEEcCCCCCCcccCCCCC
Q 002748 318 LVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALS--NMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNE 395 (885)
Q Consensus 318 ~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~--~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~g~~ 395 (885)
+++...+||.||.|.+.-||+|.......|.+|..+. +.-+.+|+.+.+|++++++.|+||++|.+ ..|.||+|+.
T Consensus 137 ~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG--~GGRlG~gde 214 (1267)
T KOG0783|consen 137 VLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG--AGGRLGFGDE 214 (1267)
T ss_pred ccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC--CCCccCcCcc
Confidence 4566799999999999999999999999999999775 44578899999999999999999999999 7799999999
Q ss_pred cceeeeeeecCCCCCceEEEEeeCCceEEEEecCCeEEEeecCCCcccCCCCC-cccccceeeec--cCCC-eEEEEEeC
Q 002748 396 VSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDR-KSVSIPREVES--LKGL-RTVRAACG 471 (885)
Q Consensus 396 ~~~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GQLG~g~~-~~~~~P~~V~~--l~~~-~I~~VacG 471 (885)
...+.|++|.+ +.+.+|.+|+....|+++||++|-||+||.|.++|||..+. .....|.+|.. +++. .|+.|++|
T Consensus 215 q~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 215 QYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred ccccccccccc-ccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 99999999998 78889999999999999999999999999999999998754 34455666643 2333 68999999
Q ss_pred CceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCCCCCCCCc-eeecEEeeccCCCCeEEEEecCCEEEEEecCCeEEE
Q 002748 472 VWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEA-KLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYT 550 (885)
Q Consensus 472 ~~ht~alte~~~~~s~~~~~~~G~vy~WG~n~~GQLG~g~~~~-~~~P~~V~~l~~~~I~~Ia~G~~ht~aLt~dG~Vy~ 550 (885)
..|+++.+ +..||+||.|. ||||..+... ...|..+.. ....|.-|+|...-|++++.+|.+|+
T Consensus 294 ~~hsVawt-------------~~~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~ 358 (1267)
T KOG0783|consen 294 KSHSVAWT-------------DTDVYSWGLNN-GQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIA 358 (1267)
T ss_pred cceeeeee-------------cceEEEecccC-ceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEE
Confidence 99999997 78999999975 9999877643 456755533 34678999999999999999999999
Q ss_pred EeCCCCCcCCCCCCCCCCCeeec-ccc--CCCcEEEEEecCCceeeeecCCeEEEecCCC
Q 002748 551 MGSPVYGQLGNPQADGKLPNRVE-GKL--SKSFVEEIACGSYHVAVLTSKTEVYTWGKGA 607 (885)
Q Consensus 551 wG~N~~GQLG~~~~~~~~p~~v~-~~l--~~~~I~~Ia~G~~Ht~aLt~~G~Vy~WG~n~ 607 (885)
+-+-..-.+-......+. ..|. +.+ ....+.+..+...-.++||+-|+||.|-.+.
T Consensus 359 ~ady~~~k~~~n~~~lks-~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 359 FADYNQVKLPFNVDFLKS-LKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred EecccceecCcchhccce-eEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 875332222111111111 1111 111 1233556666777789999999999997543
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.4e-20 Score=219.85 Aligned_cols=344 Identities=25% Similarity=0.339 Sum_probs=222.3
Q ss_pred cCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceeecccCCCCEEEEEecCCeEEE--EEcCCcEEEEeCCC-C
Q 002748 257 GDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAAL--VNKQGEVFSWGEES-G 333 (885)
Q Consensus 257 l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~--Lt~dG~Vy~wG~N~-~ 333 (885)
-+..|+||.-|...+.|..-.|.+. ...-+| .+|++|+.|-....+ ...+|-++.-|... .
T Consensus 494 qa~sGKvYYaGn~t~~Gl~e~G~nW--------mEL~l~--------~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~~ 557 (3738)
T KOG1428|consen 494 QARSGKVYYAGNGTRFGLFETGNNW--------MELCLP--------EPIVQISVGIDTIMFRSGAGHGWIASVDDKKRN 557 (3738)
T ss_pred hhcCccEEEecCccEEeEEccCCce--------EEecCC--------CceEEEEeccchhheeeccCcceEEeccCcccc
Confidence 4678999999998855655555433 111222 379999999665544 44566677666321 1
Q ss_pred CCcCCCCCCCccccEEeeccCCCcEEEEeecCcEEEEEEcCCcEEEEcCCCCCCcccCCCCCcceeeeeeecCCCCCceE
Q 002748 334 GRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHV 413 (885)
Q Consensus 334 GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I 413 (885)
|. ..++......+|+.|.+...---++.++|++|..|.... . .......+. .+++.-|
T Consensus 558 ~~-----------~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm--~--------~n~SSqmln-~L~~~~i 615 (3738)
T KOG1428|consen 558 GR-----------LRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM--R--------VNVSSQMLN-GLDNVMI 615 (3738)
T ss_pred cc-----------hhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE--E--------ecchHHHhh-cccccee
Confidence 11 122222234577777655544567899999999987621 0 000111223 3778889
Q ss_pred EEEeeCCceEEEEecCCeEEEeecCCCcccCCCCCccc-ccceee-------------eccCCCeEEEEEeCCceEEEEE
Q 002748 414 SSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSV-SIPREV-------------ESLKGLRTVRAACGVWHTAAVV 479 (885)
Q Consensus 414 v~IacG~~ht~aLt~~G~Vy~wG~n~~GQLG~g~~~~~-~~P~~V-------------~~l~~~~I~~VacG~~ht~alt 479 (885)
.+++.|..|.++++.+|.||+||-|..+|+|.-..... ..|..- ..+.+...+...||.-...-+.
T Consensus 616 sslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~Gva 695 (3738)
T KOG1428|consen 616 SSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVA 695 (3738)
T ss_pred ehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccc
Confidence 99999999999999999999999999999998533221 122111 1222223333344432221111
Q ss_pred EeeecCCCccccCCCcEEEEeCCCCCCCCCC--------C-------------------CCceeecEEeec---cCCCCe
Q 002748 480 EVMVGNSSSSNCSSGKLFTWGDGDKGRLGHG--------D-------------------KEAKLVPTCVAA---LVEPNF 529 (885)
Q Consensus 480 e~~~~~s~~~~~~~G~vy~WG~n~~GQLG~g--------~-------------------~~~~~~P~~V~~---l~~~~I 529 (885)
-.......|.+..+|.+..+.+--| . ......|..|.. .-+.++
T Consensus 696 ------C~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv 769 (3738)
T KOG1428|consen 696 ------CGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKV 769 (3738)
T ss_pred ------cccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeE
Confidence 0122234677777776655443211 0 001123444432 224578
Q ss_pred EEEEecCCEEEEEecCCeEEEEeCCCCCcCCCCCCCCC-CCeeeccccCCCcEEEEEecCCceeeeecCCeEEEecCCCC
Q 002748 530 CRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGK-LPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGAN 608 (885)
Q Consensus 530 ~~Ia~G~~ht~aLt~dG~Vy~wG~N~~GQLG~~~~~~~-~p~~v~~~l~~~~I~~Ia~G~~Ht~aLt~~G~Vy~WG~n~~ 608 (885)
.+|+||..|+++|.+|++||++|+|.+||||.+....+ .|+.|.. +.+..|++|++|.+|++++..||+||++|.-..
T Consensus 770 ~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~-~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~K 848 (3738)
T KOG1428|consen 770 SSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVIL-PSDTVIVQVAAGSNHTILRANDGSVFTFGAFGK 848 (3738)
T ss_pred EEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEc-CCCCceEEEecCCCceEEEecCCcEEEeccccC
Confidence 99999999999999999999999999999999987654 6877774 567789999999999999999999999999999
Q ss_pred CCCCCCCCCC---CCcCEEecccC---CCcEEEEEcCCCccce
Q 002748 609 GRLGHGDTDD---RNSPSLVEALK---DKQVKSIACGTNFTAA 645 (885)
Q Consensus 609 GQLG~g~~~~---~~~P~~V~~l~---~~~V~~IacG~~hT~a 645 (885)
||||..--+. ...|.+|..+- +.....|.+.++.+++
T Consensus 849 GQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i 891 (3738)
T KOG1428|consen 849 GQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSII 891 (3738)
T ss_pred ccccCccccccccccCCCcCCCCCccccccceeeccCCCccee
Confidence 9999653322 24577776543 3355566665555443
No 8
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.82 E-value=2.3e-20 Score=176.08 Aligned_cols=104 Identities=28% Similarity=0.532 Sum_probs=95.0
Q ss_pred HHHHHhcCCeEEEEecCCCceeEEEEEeCCCCeEEEecCC--cceeEEccccceeeccccChhhhcCCCC----CCCCcE
Q 002748 17 AITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGK--EEKHLKLSHVSRIISGQRTPIFQRYPRP----EKEYQS 90 (885)
Q Consensus 17 ~l~~L~~G~~l~K~~~~~kp~~r~f~l~~d~~~l~W~~~~--~~~~i~l~~I~eVr~G~~t~~f~~~~~~----~~~~~~ 90 (885)
++.+|++|+.|+|+.+++++++|+|+|+++...|.|.+.+ .++.|+|++|+|||.|+.++.|++.... ..+++|
T Consensus 2 v~~~L~~G~~~~K~~~~~~~~~~~f~ld~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~ 81 (115)
T cd01248 2 VPEALQRGSVFIKWDDTSRERRRLFRLDEKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERC 81 (115)
T ss_pred chHHHhCCCEEEEEcCCCceeeEEEEEcCCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccE
Confidence 5789999999999988889999999999999999999854 5788999999999999999999987433 589999
Q ss_pred EEEEEcC----ceeEEEeCCHHHHHHHHHHHHHH
Q 002748 91 FSLIYND----RSLDLICKDKDEAEVWFSGLKAL 120 (885)
Q Consensus 91 FSii~~~----rtLdLva~~~~e~~~Wv~gL~~L 120 (885)
|||||+. ++|||||+|+++|+.|+.||++|
T Consensus 82 fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~L 115 (115)
T cd01248 82 FTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRKL 115 (115)
T ss_pred EEEEECCCCCeeEEEEEECCHHHHHHHHHHHhhC
Confidence 9999976 79999999999999999999986
No 9
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.6e-18 Score=203.01 Aligned_cols=250 Identities=27% Similarity=0.452 Sum_probs=175.4
Q ss_pred CCCEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEeeccCCCcEEEEeecCcEEEEEEcCCcEEEEcC
Q 002748 303 VLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGD 382 (885)
Q Consensus 303 ~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~ 382 (885)
..+|+++.+...---++.++|++|..|...-. ....-..+..|++.-|.+++.|..|.++|+.+|+||+||-
T Consensus 568 ~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~Gl 639 (3738)
T KOG1428|consen 568 RRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGL 639 (3738)
T ss_pred cceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEec
Confidence 34677765544444578999999999953210 0122345667888999999999999999999999999999
Q ss_pred CCCCCcccCCCCCcceeeeeeecC-------C------CCCceEEEEeeCCceEEEE------ecCCeEEEeecCCCccc
Q 002748 383 GTYNFGLLGHGNEVSHWVPKRVNG-------P------LEGIHVSSISCGPWHTAVV------TSAGQLFTFGDGTFGVL 443 (885)
Q Consensus 383 n~~~~GqLG~g~~~~~~~P~~v~~-------~------l~~~~Iv~IacG~~ht~aL------t~~G~Vy~wG~n~~GQL 443 (885)
| +.+|+|.-.......-.+..+ | +....-+-..||.....-+ --.|.+..+|.+..+.+
T Consensus 640 N--N~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~ 717 (3738)
T KOG1428|consen 640 N--NMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCL 717 (3738)
T ss_pred C--CcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccce
Confidence 9 889999864432211111111 0 0111112222332211111 12466666776655543
Q ss_pred CCC--------CC-------------------cccccceeee---ccCCCeEEEEEeCCceEEEEEEeeecCCCccccCC
Q 002748 444 GHG--------DR-------------------KSVSIPREVE---SLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSS 493 (885)
Q Consensus 444 G~g--------~~-------------------~~~~~P~~V~---~l~~~~I~~VacG~~ht~alte~~~~~s~~~~~~~ 493 (885)
--| .. .....|..|. ...++++.+|+||..|+++|. ++
T Consensus 718 ~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~------------sd 785 (3738)
T KOG1428|consen 718 RCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLA------------SD 785 (3738)
T ss_pred eccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEe------------cC
Confidence 211 00 0112333333 223578999999999999998 59
Q ss_pred CcEEEEeCCCCCCCCCCCCCceeecEEeeccCCCCeEEEEecCCEEEEEecCCeEEEEeCCCCCcCCCCCCCC----CCC
Q 002748 494 GKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADG----KLP 569 (885)
Q Consensus 494 G~vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht~aLt~dG~Vy~wG~N~~GQLG~~~~~~----~~p 569 (885)
++||++|.|.+||||+|+......|+.|..+.+..|++|++|.+||+++..||.||++|.-..|||+.|..+. ..|
T Consensus 786 ~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~P 865 (3738)
T KOG1428|consen 786 RRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIP 865 (3738)
T ss_pred CcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876543 356
Q ss_pred eeecc
Q 002748 570 NRVEG 574 (885)
Q Consensus 570 ~~v~~ 574 (885)
.++.+
T Consensus 866 e~v~~ 870 (3738)
T KOG1428|consen 866 EKVSG 870 (3738)
T ss_pred CcCCC
Confidence 66654
No 10
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=99.73 E-value=1.9e-17 Score=157.79 Aligned_cols=107 Identities=30% Similarity=0.548 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCCeEEEEecCC------CceeEEEEEeCCCCeEEEecCC---------cceeEEccccceeeccccChhh
Q 002748 14 FVRAITALKKGACLLKYGRRG------KPKFCPFRLSNDESVLIWFSGK---------EEKHLKLSHVSRIISGQRTPIF 78 (885)
Q Consensus 14 ~~~~l~~L~~G~~l~K~~~~~------kp~~r~f~l~~d~~~l~W~~~~---------~~~~i~l~~I~eVr~G~~t~~f 78 (885)
|++||..|+.|++|.||.|++ +||+|+|+|++++..|.|.+.+ +.+.+.|.+|.+|..|..++.|
T Consensus 2 v~~ai~~~~~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~ 81 (123)
T PF12814_consen 2 VIQAITQLMIGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPG 81 (123)
T ss_pred HHHHHHHhhcccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCcc
Confidence 689999999999999999988 9999999999999999999833 2356999999999999999988
Q ss_pred hcCCCCCCCCcEEEEEEcCceeEEEeCCHHHHHHHHHHHHHHHHc
Q 002748 79 QRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISR 123 (885)
Q Consensus 79 ~~~~~~~~~~~~FSii~~~rtLdLva~~~~e~~~Wv~gL~~Li~~ 123 (885)
... .....||.|+..+|+|||+|++.+++++|++||++|+.+
T Consensus 82 ~~~---~~~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~~ 123 (123)
T PF12814_consen 82 LKK---PDHNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLLQK 123 (123)
T ss_pred ccc---cccceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhhC
Confidence 821 225566666667799999999999999999999999863
No 11
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.33 E-value=1.3e-13 Score=160.02 Aligned_cols=135 Identities=32% Similarity=0.494 Sum_probs=117.1
Q ss_pred HHHHHHHHhcCCeEEEEecCCCceeEEEEEeCCCCeEEEecC---CcceeEEccccceeeccccChhhhcCCCCCCCCcE
Q 002748 14 FVRAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSG---KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQS 90 (885)
Q Consensus 14 ~~~~l~~L~~G~~l~K~~~~~kp~~r~f~l~~d~~~l~W~~~---~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~ 90 (885)
.++++.+|++|+.|.|++.+++.+.|+|.|+.|...++|.+. ..+..+.|++|.|||.|++|+.+|+..+...+++|
T Consensus 10 ~~~~~~~~~~gs~~~k~r~~~~~~~r~~~l~~d~~~~r~~~~~~~~~~~~~~i~~i~~vr~g~~t~~lr~~~~~~~~~~~ 89 (746)
T KOG0169|consen 10 DDECILSMQKGSDLRKVRSNSRKFNRLFKLDNDGSTVRWSRTNRDPNKAKVSISEIEEVRSGKQTENLRSLARDLPEDRC 89 (746)
T ss_pred cHHHHHHHHhcchhhhhcccchhHHhhhhhhhccceEEeccccCCchhcccchhhhHHHhccccchhhHHHHHhcCccee
Confidence 468999999999999999999999999999999888888862 23444999999999999999999998888999999
Q ss_pred EEEEEcC--ceeEEEeCCHHHHHHHHHHHHHHHHcccccccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCccc
Q 002748 91 FSLIYND--RSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNDSLQ 166 (885)
Q Consensus 91 FSii~~~--rtLdLva~~~~e~~~Wv~gL~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (885)
|||+|++ ++|||+|.++++++.||.||++|++.....+.+ .++..|+.+.|..+|...
T Consensus 90 fsi~~~~~~e~ldl~a~s~~~a~~wV~gl~~l~s~~~~~~~~------------------~~~~~wi~~~~~~ad~~~ 149 (746)
T KOG0169|consen 90 FSIIFKDRYESLDLIANSKEDANIWVSGLRKLISRSKSMRQR------------------SRREHWIHSIFQEADKNK 149 (746)
T ss_pred EEEEeccccccccccCCCHHHHHHHhhhHHHHHhccchhhhc------------------chHHHHHHHHHHHHcccc
Confidence 9999987 899999999999999999999999988743321 346678877787777543
No 12
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.28 E-value=8e-13 Score=113.02 Aligned_cols=68 Identities=40% Similarity=0.881 Sum_probs=46.9
Q ss_pred ecccccccccCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHhhhc
Q 002748 649 HKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLR 717 (885)
Q Consensus 649 ~kwvs~~d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~l~ 717 (885)
+.|+++.+...|..|..+|+ +.++||||+.||.+||..|++.+..++.......+++|||+.||..|+
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~-~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFS-LFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-B-SSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCC-CceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 36999999999999999998 678889999999999999999998777333445689999999999885
No 13
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.12 E-value=3.7e-11 Score=96.19 Aligned_cols=50 Identities=34% Similarity=0.725 Sum_probs=47.8
Q ss_pred CCeEEEecCCCCCCCC-CCCCCCCCcCEEecccCCCcEEEEEcCCCcccee
Q 002748 597 KTEVYTWGKGANGRLG-HGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAI 646 (885)
Q Consensus 597 ~G~Vy~WG~n~~GQLG-~g~~~~~~~P~~V~~l~~~~V~~IacG~~hT~al 646 (885)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||.+||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888899999999999999999999999999986
No 15
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.12 E-value=8.4e-12 Score=143.26 Aligned_cols=120 Identities=22% Similarity=0.409 Sum_probs=109.4
Q ss_pred cccCChHHHHHHHHHHhcCCeEEEE-ecCCCceeEEEEEeCCCCeEEEec--CCcceeEEccccceeeccccChhhhcCC
Q 002748 6 MSKLILGCFVRAITALKKGACLLKY-GRRGKPKFCPFRLSNDESVLIWFS--GKEEKHLKLSHVSRIISGQRTPIFQRYP 82 (885)
Q Consensus 6 ~~~~~~~~~~~~l~~L~~G~~l~K~-~~~~kp~~r~f~l~~d~~~l~W~~--~~~~~~i~l~~I~eVr~G~~t~~f~~~~ 82 (885)
..+|.+.|..+.+..|+.|+.|+++ +++.+|.+|+|.+-.++.++.|.. .+-++.|+|.+|+|||+|+.+..|+|++
T Consensus 6 ~~aps~~e~~~t~~sle~gtvmt~~~sk~~~peRr~l~~~~Etrq~~ws~~adk~egai~i~eikeirpgk~skdfdry~ 85 (1267)
T KOG1264|consen 6 VDAPSEYEKSQTKRSLELGTVMTVFSSKKSTPERRTLQVIMETRQVAWSKTADKIEGAIDIREIKEIRPGKNSKDFDRYK 85 (1267)
T ss_pred CCCcchhhHHHHHhhhccceEEEEEecCCCChhhHHHHHHHHHHHHHHHHHHHhhcceeeeeeeeeccCCccchhHHHHH
Confidence 4688999999999999999999998 455789999999999999999987 4679999999999999999999999996
Q ss_pred C--CCCCCcEEEEEEcC----ceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 002748 83 R--PEKEYQSFSLIYND----RSLDLICKDKDEAEVWFSGLKALISRSH 125 (885)
Q Consensus 83 ~--~~~~~~~FSii~~~----rtLdLva~~~~e~~~Wv~gL~~Li~~~~ 125 (885)
+ ..++++||.|.|+. |+|.|+|.+++|++.|+.||++|+...-
T Consensus 86 ~~fr~k~s~cfvil~gt~f~lktls~vatse~e~n~w~~glkw~~~dtl 134 (1267)
T KOG1264|consen 86 RAFRQKESCCFVILYGTQFVLKTLSLVATSEEEANNWLSGLKWLHQDTL 134 (1267)
T ss_pred HHhccccceeEEEeeCcEEEeeeeehhhhhhHHHHHHhhcchhhhhhhc
Confidence 5 48889999999988 9999999999999999999999987653
No 16
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1e-12 Score=153.33 Aligned_cols=189 Identities=29% Similarity=0.503 Sum_probs=150.5
Q ss_pred CceeecccCCCCEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEeeccCCCcEEEEeecCcEEEEEEc
Q 002748 294 LPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTL 373 (885)
Q Consensus 294 ~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLt~ 373 (885)
.|+.+..+...+|.+++||.+|.++++..|++|+||.|.+||+|++....-..|.+++.+.+....+|++|..|++++..
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~ 83 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS 83 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh
Confidence 34444445556799999999999999999999999999999999995554444999999999999999999999998874
Q ss_pred CCcEEEEcCCCCCCcccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCeEEEeecCCCcccCCCCCccccc
Q 002748 374 SGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSI 453 (885)
Q Consensus 374 dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~ 453 (885)
|+++++.+|.++++|....||+|+.-......
T Consensus 84 ------------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~ 115 (850)
T KOG0941|consen 84 ------------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL 115 (850)
T ss_pred ------------------------------------------------chhhcchhccccccCCcccccccccccccccc
Confidence 99999999999999999999999977777788
Q ss_pred ceeeeccCCCeEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCCCCCCCCceeecEEeecc------CCC
Q 002748 454 PREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAAL------VEP 527 (885)
Q Consensus 454 P~~V~~l~~~~I~~VacG~~ht~alte~~~~~s~~~~~~~G~vy~WG~n~~GQLG~g~~~~~~~P~~V~~l------~~~ 527 (885)
|..+..+-+..+..|+||..|++++.+ .-|++|..|.+..| +.....+..-..+ ...
T Consensus 116 ~~~v~e~i~~~~t~ia~~~~ht~a~v~-----------~l~qsf~~~~~~sG------k~~i~s~s~~~~l~~~d~~~~~ 178 (850)
T KOG0941|consen 116 PLLVLELIGSRVTRIACVRGHTLAIVP-----------RLGQSFSFGKGASG------KGVIVSLSGEDLLRDHDSEKDH 178 (850)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHhhhh-----------hhcceeecccCCCC------CceeeccchhhhcccccHHHHH
Confidence 888888878899999999999999986 67999999998876 1111111110001 112
Q ss_pred CeEEEEecCCEEEEEecCCe
Q 002748 528 NFCRVACGHSLTVALTTSGH 547 (885)
Q Consensus 528 ~I~~Ia~G~~ht~aLt~dG~ 547 (885)
.+..+..|.+.++.|...+.
T Consensus 179 ~~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 179 RCSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred HHHHHhcCCCceEEEEeecc
Confidence 34557788888888765543
No 17
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.01 E-value=1.5e-10 Score=132.34 Aligned_cols=75 Identities=20% Similarity=0.599 Sum_probs=55.5
Q ss_pred eeeeccccccc-ccCccccccCCCccc----ccccccccccceeeccCCCccccccc--c-C---CCCCCCcccchhhHh
Q 002748 646 ICLHKWVSGVD-QSMCSGCRLPFNNFK----RKRHNCYNCGLVFCHSCSSKKSLKAS--M-A---PNPNKPYRVCDNCFN 714 (885)
Q Consensus 646 l~~~kwvs~~d-~s~C~~C~~~F~~f~----rkrh~C~~CG~v~C~~Css~~~~~~~--~-~---~~~~~~~RVC~~C~~ 714 (885)
+..+.|+++.+ ...|+.|++.|..+. .+|||||+||.+||..||+++...+. + . +....++||||.||+
T Consensus 448 LhAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYd 527 (1374)
T PTZ00303 448 LHNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYK 527 (1374)
T ss_pred ccCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHH
Confidence 34567999988 478999999997443 47899999999999999999864321 1 1 112235789999997
Q ss_pred hhcccc
Q 002748 715 KLRKTF 720 (885)
Q Consensus 715 ~l~~~~ 720 (885)
++....
T Consensus 528 q~EnLl 533 (1374)
T PTZ00303 528 EYETVS 533 (1374)
T ss_pred HHHhHH
Confidence 664433
No 18
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.00 E-value=4.8e-10 Score=89.67 Aligned_cols=50 Identities=42% Similarity=0.727 Sum_probs=47.7
Q ss_pred CCcEEEEeCCCCCCcC-CCCCCCccccEEeeccCCCcEEEEeecCcEEEEE
Q 002748 322 QGEVFSWGEESGGRLG-HGVDSDVLHPKLIDALSNMNIELVACGEYHTCAV 371 (885)
Q Consensus 322 dG~Vy~wG~N~~GqLG-~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aL 371 (885)
||+||+||.|.+|||| .+.......|++|+.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888889999999999999999999999999987
No 19
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=98.98 E-value=1.2e-10 Score=124.94 Aligned_cols=68 Identities=35% Similarity=0.868 Sum_probs=59.9
Q ss_pred eeecccccccccCcccccc-CCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHhhhcc
Q 002748 647 CLHKWVSGVDQSMCSGCRL-PFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 718 (885)
Q Consensus 647 ~~~kwvs~~d~s~C~~C~~-~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~l~~ 718 (885)
..+.|+|+.+.+.|+.|+. .|+ +..+|||||+||.+||..|+.++.+++.+. .++.|||+.||..|.+
T Consensus 158 ~~~~W~PD~ea~~C~~C~~~~Ft-l~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~---~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 158 SAAVWLPDSEATECMVCGCTEFT-LSERRHHCRNCGDIVCAPCSRNRFLLPNLS---TKPIRVCDICFEELEK 226 (288)
T ss_pred cCCcccCcccceecccCCCcccc-HHHHHHHHHhcchHhhhhhhcCcccccccC---CCCceecHHHHHHHhc
Confidence 4567999999999999999 888 777789999999999999999996666544 5899999999999987
No 20
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2e-10 Score=132.74 Aligned_cols=64 Identities=39% Similarity=0.876 Sum_probs=56.7
Q ss_pred cccCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHhhhcccccC
Q 002748 656 DQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFDT 722 (885)
Q Consensus 656 d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~l~~~~~~ 722 (885)
|...|..|...|+ ++.|+|||++||+|||..|+++...++.++. ++++||||.||..|.+....
T Consensus 164 D~~~C~rCr~~F~-~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi--~~~VRVCd~C~E~l~~~s~~ 227 (634)
T KOG1818|consen 164 DSEECLRCRVKFG-LTNRKHHCRNCGQVFCGQCSSKSLTLPKLGI--EKPVRVCDSCYELLTRASVG 227 (634)
T ss_pred cccccceeeeeee-eccccccccccchhhccCccccccCcccccc--cccceehhhhHHHhhhcccc
Confidence 4566999999999 5556799999999999999999999999887 58999999999999887764
No 21
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=98.91 E-value=2.7e-10 Score=124.80 Aligned_cols=72 Identities=33% Similarity=0.816 Sum_probs=63.0
Q ss_pred CccceeeeecccccccccCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCcccch-----hhHhh
Q 002748 641 NFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCD-----NCFNK 715 (885)
Q Consensus 641 ~hT~al~~~kwvs~~d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~-----~C~~~ 715 (885)
..++.|..+.|+++.+...|+.|..+|+ +.|+|||||+||.+||+.||....+++..+.+ |..|||. .||..
T Consensus 885 stsatlsppawipd~~a~~cmacq~pf~-afrrrhhcrncggifcg~cs~asapip~~gl~--ka~rvcrpqsnldc~~r 961 (990)
T KOG1819|consen 885 STSATLSPPAWIPDEDAEQCMACQMPFN-AFRRRHHCRNCGGIFCGKCSCASAPIPEHGLD--KAPRVCRPQSNLDCLTR 961 (990)
T ss_pred ccccccCCcccCCCCcchhhhhccCcHH-HHHHhhhhcccCceeecccccCCCCCcccccc--cCceecCCcccccceee
Confidence 3455667788999999999999999999 77788999999999999999999888877764 8899999 78765
No 22
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.4e-10 Score=135.67 Aligned_cols=182 Identities=26% Similarity=0.411 Sum_probs=139.3
Q ss_pred CceEEEEeeCCceEEEEecCCeEEEeecCCCcccCCCCCcccccceeeeccCCCeEEEEEeCCceEEEEEEeeecCCCcc
Q 002748 410 GIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSS 489 (885)
Q Consensus 410 ~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~alte~~~~~s~~~ 489 (885)
-.+|.+++||.+|+++++..|++|.||.|.+||+|++....-..|..++.+.+.+..+|++|..|++++.- ....
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~-----~~~~ 87 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS-----HTVL 87 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-----chhh
Confidence 34799999999999999999999999999999999995444444999999999999999999999999862 2334
Q ss_pred ccCCCcEEEEeCCCCCCCCCCCCCceeecEEeeccCCCCeEEEEecCCEEEEE-ecCCeEEEEeCCCCC--cCCCCCCCC
Q 002748 490 NCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVAL-TTSGHVYTMGSPVYG--QLGNPQADG 566 (885)
Q Consensus 490 ~~~~G~vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht~aL-t~dG~Vy~wG~N~~G--QLG~~~~~~ 566 (885)
-+.+|.++++|....||+|+........|..+..+....+.+|+||..|+++. ..-|++|.+|.+..| ++-......
T Consensus 88 lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~s~~~ 167 (850)
T KOG0941|consen 88 LTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSLSGED 167 (850)
T ss_pred cchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeeccchhh
Confidence 45689999999999999999877888889988888889999999999998875 456899999988776 111100000
Q ss_pred CCCeeeccccCCCcEEEEEecCCceeeeecCC
Q 002748 567 KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKT 598 (885)
Q Consensus 567 ~~p~~v~~~l~~~~I~~Ia~G~~Ht~aLt~~G 598 (885)
. -.-.+.-....+..+..|.+.+..+...+
T Consensus 168 ~--l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 168 L--LRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred h--cccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 0 00000001122556778888877776543
No 23
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.77 E-value=8.4e-09 Score=73.04 Aligned_cols=30 Identities=53% Similarity=1.032 Sum_probs=26.1
Q ss_pred EEEEEecCCceeeeecCCeEEEecCCCCCC
Q 002748 581 VEEIACGSYHVAVLTSKTEVYTWGKGANGR 610 (885)
Q Consensus 581 I~~Ia~G~~Ht~aLt~~G~Vy~WG~n~~GQ 610 (885)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 24
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.72 E-value=1.8e-08 Score=71.30 Aligned_cols=30 Identities=43% Similarity=0.991 Sum_probs=26.0
Q ss_pred EEEEEecCCeEEEEEcCCcEEEEeCCCCCC
Q 002748 306 VQNIACGGRHAALVNKQGEVFSWGEESGGR 335 (885)
Q Consensus 306 I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~Gq 335 (885)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 25
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.69 E-value=7.9e-09 Score=84.80 Aligned_cols=55 Identities=49% Similarity=1.118 Sum_probs=46.8
Q ss_pred ccCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHh
Q 002748 657 QSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFN 714 (885)
Q Consensus 657 ~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~ 714 (885)
...|+.|...|+ +..++|||+.||.+||.+|+..+..++.+ ...+|+|||+.||.
T Consensus 2 ~~~C~~C~~~F~-~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~--~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFT-LTRRRHHCRNCGRIFCSKCSSNRIPLPSM--GGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCcccc-CCccccccCcCcCCcChHHcCCeeecCcc--cCCCccEeChHHhC
Confidence 457999999999 55667999999999999999999776653 34589999999995
No 26
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=98.29 E-value=8e-08 Score=105.45 Aligned_cols=71 Identities=31% Similarity=0.776 Sum_probs=55.2
Q ss_pred cccccccccCccccccCCCcccccccccccccceeeccCCCccccccc------------cCC--------CCCCCcccc
Q 002748 650 KWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKAS------------MAP--------NPNKPYRVC 709 (885)
Q Consensus 650 kwvs~~d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~------------~~~--------~~~~~~RVC 709 (885)
.|+.+.+...|..|..+|+ ++|+|||||.||.|+|++|+..-++.-+ ..| ....+.|+|
T Consensus 173 pW~DDs~V~~CP~Ca~~F~-l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC 251 (505)
T KOG1842|consen 173 PWLDDSSVQFCPECANSFG-LTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLC 251 (505)
T ss_pred cccCCCcccccccccchhh-hHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHH
Confidence 4999999999999999999 9999999999999999999654431100 011 123568999
Q ss_pred hhhHhhhccccc
Q 002748 710 DNCFNKLRKTFD 721 (885)
Q Consensus 710 ~~C~~~l~~~~~ 721 (885)
..|-..|.....
T Consensus 252 ~hCl~~L~~R~~ 263 (505)
T KOG1842|consen 252 MHCLDNLFRRKL 263 (505)
T ss_pred HHHHHHHHHHHH
Confidence 999999887544
No 27
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.08 E-value=3.5e-05 Score=70.48 Aligned_cols=87 Identities=18% Similarity=0.267 Sum_probs=64.9
Q ss_pred cCCeEEEEecCCCc-----eeEEEEEeCCCCeEEEecC---CcceeEEccccceeeccccChhhhcCCCCCCCCcEEEEE
Q 002748 23 KGACLLKYGRRGKP-----KFCPFRLSNDESVLIWFSG---KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLI 94 (885)
Q Consensus 23 ~G~~l~K~~~~~kp-----~~r~f~l~~d~~~l~W~~~---~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii 94 (885)
.|..|+|-.+.++. |.|.|.|+. ..|.|+.. ++..+|+|.+|+.|..-.+. .| ....+|.|+
T Consensus 3 ~~~~~~kr~~~~~~~~~n~KkRwF~Lt~--~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~-~~-------~~~~~fqiv 72 (98)
T cd01244 3 GNLQQVDRSRLAWKKVLHFKKRYFQLTT--THLSWAKDVQCKKSALIKLAAIKGTEPLSDK-SF-------VNVDIITIV 72 (98)
T ss_pred cccEEEEcccCCCccCcCCceeEEEECC--CEEEEECCCCCceeeeEEccceEEEEEcCCc-cc-------CCCceEEEE
Confidence 34556665444332 788999995 47888753 45778999999988654432 12 224699999
Q ss_pred EcCceeEEEeCCHHHHHHHHHHHHH
Q 002748 95 YNDRSLDLICKDKDEAEVWFSGLKA 119 (885)
Q Consensus 95 ~~~rtLdLva~~~~e~~~Wv~gL~~ 119 (885)
+.+++|-|.|++++|++.|+..|+.
T Consensus 73 t~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 73 CEDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred eCCCeEEEECCCHHHHHHHHHHHhc
Confidence 9999999999999999999999974
No 28
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=98.03 E-value=1.2e-06 Score=105.40 Aligned_cols=62 Identities=27% Similarity=0.580 Sum_probs=53.0
Q ss_pred eeecccccccccCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhh
Q 002748 647 CLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNC 712 (885)
Q Consensus 647 ~~~kwvs~~d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C 712 (885)
..+.|+++.+...|+.|.+.|. +..+|||||+||+|+|..|++.+.-+-.+. +..-|||..|
T Consensus 547 kqP~wvpdse~pncm~clqkft-~ikrrhhcRacgkVlcgvccnek~~leyl~---e~~~rv~nV~ 608 (1287)
T KOG1841|consen 547 KQPSWVPDSEAPNCMDCLQKFT-PIKRRHHCRACGKVLCGVCCNEKSALEYLS---ESEGRVSNVD 608 (1287)
T ss_pred CCCccCccccCchHHHHHhhcc-cccccccchhccceeehhhcchhhhhhhcC---cccccccccc
Confidence 4567999999999999999999 777889999999999999999996555443 4667888877
No 29
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=97.94 E-value=1e-06 Score=99.34 Aligned_cols=111 Identities=26% Similarity=0.454 Sum_probs=90.0
Q ss_pred HHHHHHHHhcCCeEEEE-ecCCCceeEEEEEeCCCCeEEEecC--C---------cceeEEccccceeeccccChhhhcC
Q 002748 14 FVRAITALKKGACLLKY-GRRGKPKFCPFRLSNDESVLIWFSG--K---------EEKHLKLSHVSRIISGQRTPIFQRY 81 (885)
Q Consensus 14 ~~~~l~~L~~G~~l~K~-~~~~kp~~r~f~l~~d~~~l~W~~~--~---------~~~~i~l~~I~eVr~G~~t~~f~~~ 81 (885)
-+|.|.+|..|+.|-|. +|+.+-++.+.+|++..+.|.+-.- . -.+.++|.||+.|..|++.+-.+..
T Consensus 533 kqqrLnrL~eGt~FRKl~~rrrqdkFWycrLspnhKvLhygd~de~p~~e~~~esl~~klpvaDIkav~tgkdcphmkek 612 (713)
T KOG2999|consen 533 KQQRLNRLVEGTVFRKLSKRRRQDKFWYCRLSPNHKVLHYGDCDEEPQGEVTQESLQEKLPVADIKAVVTGKDCPHMKEK 612 (713)
T ss_pred HHHHHHHHHhhhHHHHhhhhhhhhhheeeeecCCcceeeecCccCCCCCCCchhhhhhhcCHHHHHHHhcCCCCcchhhc
Confidence 34788999999999998 4446678888999999655555431 1 1445999999999999999988775
Q ss_pred ----CCCCCCCcEEEEEEc--C-ceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 002748 82 ----PRPEKEYQSFSLIYN--D-RSLDLICKDKDEAEVWFSGLKALISRS 124 (885)
Q Consensus 82 ----~~~~~~~~~FSii~~--~-rtLdLva~~~~e~~~Wv~gL~~Li~~~ 124 (885)
...+.-++.|||.|. + .+|++||+|+-|+..|..||.+|+...
T Consensus 613 ~a~kQnk~~lelafsityD~~e~~~Lnfiapdk~e~~iWtdGL~aLLG~~ 662 (713)
T KOG2999|consen 613 SALKQNKEVLELAFSITYDMKEGETLNFIAPDKTEYCIWTDGLNALLGSD 662 (713)
T ss_pred chhhhhHHHHhhhhhhhccCCCCceEeeecCCcceEEeehhhHHHHhCCh
Confidence 223566899999996 3 899999999999999999999999754
No 30
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.93 E-value=2.8e-06 Score=91.17 Aligned_cols=84 Identities=27% Similarity=0.610 Sum_probs=61.8
Q ss_pred EEcCCCccceeeeec----cccc-ccccCccccccCCCc----------ccccccccccccceeeccCCCccccccccCC
Q 002748 636 IACGTNFTAAICLHK----WVSG-VDQSMCSGCRLPFNN----------FKRKRHNCYNCGLVFCHSCSSKKSLKASMAP 700 (885)
Q Consensus 636 IacG~~hT~al~~~k----wvs~-~d~s~C~~C~~~F~~----------f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~ 700 (885)
++||..--+++-.-+ -.+. .+...|..|.++|.. +.-+.||||.||..+|..|++++...+.+++
T Consensus 256 ~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~ 335 (404)
T KOG1409|consen 256 ISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGF 335 (404)
T ss_pred eeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccc
Confidence 567665555542111 1111 245679999999861 2236899999999999999999999999988
Q ss_pred CCCCCcccchhhHhhhccccc
Q 002748 701 NPNKPYRVCDNCFNKLRKTFD 721 (885)
Q Consensus 701 ~~~~~~RVC~~C~~~l~~~~~ 721 (885)
. ..+|+|+.||..|+...-
T Consensus 336 e--~~vR~~~~c~~~i~~~~~ 354 (404)
T KOG1409|consen 336 E--FSVRVCDSCYPTIKDEER 354 (404)
T ss_pred e--eEEEEecccchhhhcCCC
Confidence 4 789999999999965543
No 31
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.87 E-value=0.00014 Score=66.55 Aligned_cols=93 Identities=22% Similarity=0.281 Sum_probs=66.7
Q ss_pred eEEEEecC-CCceeEEEEEeCCCCeEEEecC----CcceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcCcee
Q 002748 26 CLLKYGRR-GKPKFCPFRLSNDESVLIWFSG----KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSL 100 (885)
Q Consensus 26 ~l~K~~~~-~kp~~r~f~l~~d~~~l~W~~~----~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~rtL 100 (885)
.|.|-+.. +.=+.|+|.|..+...|.++.+ +.+..|+|+++..|....... ..+.......+|.|...+|++
T Consensus 4 ~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~---~~~~~~~~~~~f~i~t~~r~~ 80 (101)
T cd01235 4 YLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGM---GAPKHTSRKGFFDLKTSKRTY 80 (101)
T ss_pred EEEEcCCCCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCC---CCCCCCCCceEEEEEeCCceE
Confidence 35565443 3347889999987678988873 346789999988877543221 011122345678887788999
Q ss_pred EEEeCCHHHHHHHHHHHHHHH
Q 002748 101 DLICKDKDEAEVWFSGLKALI 121 (885)
Q Consensus 101 dLva~~~~e~~~Wv~gL~~Li 121 (885)
.|.|++++|++.|+.+|+.+|
T Consensus 81 ~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 81 NFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEECCCHHHHHHHHHHHHhhC
Confidence 999999999999999998764
No 32
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.75 E-value=0.00018 Score=66.46 Aligned_cols=79 Identities=11% Similarity=0.183 Sum_probs=62.4
Q ss_pred EecCCCceeEEEEEeCCCCeEEEec-----CCcceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcCceeEEEe
Q 002748 30 YGRRGKPKFCPFRLSNDESVLIWFS-----GKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLIC 104 (885)
Q Consensus 30 ~~~~~kp~~r~f~l~~d~~~l~W~~-----~~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~rtLdLva 104 (885)
+++|+| ++|.|.|..+ +.|.|+. .++...|+|++..+|..|.... ....||.|++.+|+.-|+|
T Consensus 19 ~~~K~W-krRWFvL~~~-~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~---------~~~~~f~I~tp~R~f~l~A 87 (104)
T cd01236 19 HRSKRW-QRRWFILYDH-GLLTYALDEMPTTLPQGTIDMNQCTDVVDAEART---------GQKFSICILTPDKEHFIKA 87 (104)
T ss_pred eeeccc-cceEEEEeCC-CEEEEeeCCCCCcccceEEEccceEEEeeccccc---------CCccEEEEECCCceEEEEe
Confidence 344544 6788999866 6777753 2457889999999999887431 1367999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 002748 105 KDKDEAEVWFSGLKA 119 (885)
Q Consensus 105 ~~~~e~~~Wv~gL~~ 119 (885)
++++|++.|+..|..
T Consensus 88 ete~E~~~Wi~~l~~ 102 (104)
T cd01236 88 ETKEEISWWLNMLMV 102 (104)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998864
No 33
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=1.1e-05 Score=88.33 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=59.6
Q ss_pred eeecccccccccCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHhhh
Q 002748 647 CLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKL 716 (885)
Q Consensus 647 ~~~kwvs~~d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~l 716 (885)
....|.+..--..|.+|..+|..+..+|||||.|+..||.+|+--+.+.+.. |--..++|||++|+..|
T Consensus 150 ~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p-~a~d~l~RVldS~~~nl 218 (473)
T KOG1843|consen 150 EAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVP-FAADPLQRVLDSCAFNL 218 (473)
T ss_pred cCccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCC-cccCCHHHHHhhHhhcc
Confidence 3567888889999999999999999999999999999999999888776643 23347899999999999
No 34
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.65 E-value=0.00034 Score=65.11 Aligned_cols=79 Identities=20% Similarity=0.353 Sum_probs=57.9
Q ss_pred ceeEEEEEeCCCCeEEEecCC------cceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcCceeEEEeCCHHH
Q 002748 36 PKFCPFRLSNDESVLIWFSGK------EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDE 109 (885)
Q Consensus 36 p~~r~f~l~~d~~~l~W~~~~------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~rtLdLva~~~~e 109 (885)
-+.|.|.|+. ..|.|+..+ ....|+|.++..|..-..... . ........||.|+..++++-|.|+|++|
T Consensus 21 wKkRwFvL~~--~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~-~--~~~~~~~~~F~i~t~~r~~yl~A~s~~e 95 (106)
T cd01238 21 YKERLFVLTK--SKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKN-P--PIPERFKYPFQVVHDEGTLYVFAPTEEL 95 (106)
T ss_pred ceeEEEEEcC--CEEEEECCCcccccCcceeEECCcceEEEEecCCcC-c--ccccccCccEEEEeCCCeEEEEcCCHHH
Confidence 3779999964 589888633 456799998876665332210 0 0012345799999999999999999999
Q ss_pred HHHHHHHHHH
Q 002748 110 AEVWFSGLKA 119 (885)
Q Consensus 110 ~~~Wv~gL~~ 119 (885)
++.|+..|+.
T Consensus 96 r~~WI~ai~~ 105 (106)
T cd01238 96 RKRWIKALKQ 105 (106)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 35
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=97.61 E-value=0.00042 Score=63.74 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=63.0
Q ss_pred HhcCCeEEEEecCCCceeEEEEEeCCCCeEEEecCC----cceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEc
Q 002748 21 LKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGK----EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYN 96 (885)
Q Consensus 21 L~~G~~l~K~~~~~kp~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~ 96 (885)
|++|-...|-+..+.=++|+|.|... .|.++... +...|+|.++.-...-...+. .....||.|+..
T Consensus 3 ~k~G~L~Kkg~~~k~WkkRwfvL~~~--~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~-------~~~~~~F~I~t~ 73 (100)
T cd01233 3 SKKGYLNFPEETNSGWTRRFVVVRRP--YLHIYRSDKDPVERGVINLSTARVEHSEDQAAM-------VKGPNTFAVCTK 73 (100)
T ss_pred ceeEEEEeeCCCCCCcEEEEEEEECC--EEEEEccCCCccEeeEEEecccEEEEccchhhh-------cCCCcEEEEECC
Confidence 45665555444444458899999974 78877632 355677775522111101111 113569999999
Q ss_pred CceeEEEeCCHHHHHHHHHHHHHHHH
Q 002748 97 DRSLDLICKDKDEAEVWFSGLKALIS 122 (885)
Q Consensus 97 ~rtLdLva~~~~e~~~Wv~gL~~Li~ 122 (885)
+|++-|.|+|++|++.|+..|+.++.
T Consensus 74 ~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 74 HRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred CCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 99999999999999999999998875
No 36
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.53 E-value=0.00058 Score=62.68 Aligned_cols=75 Identities=25% Similarity=0.399 Sum_probs=59.2
Q ss_pred eeEEEEEeCCCCeEEEecCC----cc-eeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcCceeEEEeCCHHHHH
Q 002748 37 KFCPFRLSNDESVLIWFSGK----EE-KHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAE 111 (885)
Q Consensus 37 ~~r~f~l~~d~~~l~W~~~~----~~-~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~rtLdLva~~~~e~~ 111 (885)
+.|.|.|.. ..|.|+..+ +. ..|+|.++..|+...+.. +......||.|++.+||.-|.|+|++|++
T Consensus 20 krRwF~L~~--~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~------~~~~~~~~Fei~tp~rt~~l~A~se~e~e 91 (101)
T cd01264 20 KTRYFTLSG--AQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKR------RDRSLPKAFEIFTADKTYILKAKDEKNAE 91 (101)
T ss_pred eeEEEEEeC--CEEEEEeccCccCCCCceEEcccceEEeeccccc------cccccCcEEEEEcCCceEEEEeCCHHHHH
Confidence 678899994 578888643 23 689999999999875441 11122579999999999999999999999
Q ss_pred HHHHHHHH
Q 002748 112 VWFSGLKA 119 (885)
Q Consensus 112 ~Wv~gL~~ 119 (885)
.|+..|..
T Consensus 92 ~WI~~i~~ 99 (101)
T cd01264 92 EWLQCLNI 99 (101)
T ss_pred HHHHHHHh
Confidence 99998864
No 37
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.52 E-value=0.00088 Score=61.01 Aligned_cols=83 Identities=18% Similarity=0.331 Sum_probs=61.6
Q ss_pred CeEEEEecC----CCceeEEEEEeCCCCeEEEecCC----cceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEc
Q 002748 25 ACLLKYGRR----GKPKFCPFRLSNDESVLIWFSGK----EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYN 96 (885)
Q Consensus 25 ~~l~K~~~~----~kp~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~ 96 (885)
..|.|.+.+ ++ +.|.|.|+.+...|.|+..+ +...|+|.++..+.. +.....+|.|+..
T Consensus 3 GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~------------~~~~~~~F~i~t~ 69 (95)
T cd01265 3 GYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYD------------PREEKGRFEIHSN 69 (95)
T ss_pred ccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcC------------CCCCCCEEEEEcC
Confidence 357787543 33 78889998776789888743 456688877543321 1112569999999
Q ss_pred CceeEEEeCCHHHHHHHHHHHHHH
Q 002748 97 DRSLDLICKDKDEAEVWFSGLKAL 120 (885)
Q Consensus 97 ~rtLdLva~~~~e~~~Wv~gL~~L 120 (885)
+|+..|.|+|++|++.|+.+|+..
T Consensus 70 ~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhh
Confidence 999999999999999999999764
No 38
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=97.41 E-value=0.0018 Score=58.35 Aligned_cols=89 Identities=19% Similarity=0.320 Sum_probs=69.0
Q ss_pred eEEEEe-cCCCceeEEEEEeCCCCeEEEec-CC------cceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcC
Q 002748 26 CLLKYG-RRGKPKFCPFRLSNDESVLIWFS-GK------EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND 97 (885)
Q Consensus 26 ~l~K~~-~~~kp~~r~f~l~~d~~~l~W~~-~~------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~ 97 (885)
.|.|.+ ..++.+.|+|.|..+ .|.++. .. ....|+|.++ +|+.....+.- .......||.|.+.+
T Consensus 6 ~L~~~~~~~~~wk~r~~vL~~~--~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~----~~~~~~~~f~i~~~~ 78 (104)
T PF00169_consen 6 WLLKKSSSRKKWKKRYFVLRDS--YLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFL----SNKKRKNCFEITTPN 78 (104)
T ss_dssp EEEEEESSSSSEEEEEEEEETT--EEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTST----STSSSSSEEEEEETT
T ss_pred EEEEECCCCCCeEEEEEEEECC--EEEEEecCccccceeeeEEEEecCc-eEEEcCccccc----cccCCCcEEEEEeCC
Confidence 455555 556778999999885 555554 22 3566999998 88887776431 446778999999988
Q ss_pred c-eeEEEeCCHHHHHHHHHHHHHHH
Q 002748 98 R-SLDLICKDKDEAEVWFSGLKALI 121 (885)
Q Consensus 98 r-tLdLva~~~~e~~~Wv~gL~~Li 121 (885)
+ ++.|.|+|+++++.|+..|+..+
T Consensus 79 ~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 79 GKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 4 99999999999999999999876
No 39
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.34 E-value=0.0015 Score=60.90 Aligned_cols=80 Identities=20% Similarity=0.177 Sum_probs=58.3
Q ss_pred ceeEEEEEeCCC-----CeEEEecC----CcceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcCceeEEEeCC
Q 002748 36 PKFCPFRLSNDE-----SVLIWFSG----KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKD 106 (885)
Q Consensus 36 p~~r~f~l~~d~-----~~l~W~~~----~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~rtLdLva~~ 106 (885)
=++|+|.|.... ..|.++.. +.++.|+|.++..|..+.... .....-...|.|...+|++-|+|++
T Consensus 19 WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~-----~~~~~~~~~f~i~t~~r~y~l~A~s 93 (108)
T cd01266 19 WVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCT-----AGNCIFGYGFDIETIVRDLYLVAKN 93 (108)
T ss_pred cEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEccccccc-----ccCcccceEEEEEeCCccEEEEECC
Confidence 388999998653 23677763 457889999988776553221 0111234579999888999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002748 107 KDEAEVWFSGLKAL 120 (885)
Q Consensus 107 ~~e~~~Wv~gL~~L 120 (885)
++|++.|+..|+.|
T Consensus 94 ~ee~~~Wi~~I~~~ 107 (108)
T cd01266 94 EEEMTLWVNCICKL 107 (108)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999754
No 40
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.32 E-value=0.0019 Score=57.18 Aligned_cols=90 Identities=26% Similarity=0.364 Sum_probs=66.6
Q ss_pred hcCCeEEEEe-cCCCceeEEEEEeCCCCeEEEecC-------CcceeEEccccceeeccccChhhhcCCCCCCCCcEEEE
Q 002748 22 KKGACLLKYG-RRGKPKFCPFRLSNDESVLIWFSG-------KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSL 93 (885)
Q Consensus 22 ~~G~~l~K~~-~~~kp~~r~f~l~~d~~~l~W~~~-------~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSi 93 (885)
+.|..+.+.. ..++.+.|++.|..+ .|.++.. .....|+|+++ +|..+..... .....+|.|
T Consensus 3 ~~G~l~~~~~~~~~~~~~~~~~L~~~--~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-------~~~~~~f~l 72 (102)
T smart00233 3 KEGWLYKKSGGKKKSWKKRYFVLFNS--TLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-------AKKPHCFEI 72 (102)
T ss_pred eeEEEEEeCCCccCCceEEEEEEECC--EEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-------CCCceEEEE
Confidence 3454444443 367788899999885 5655542 23566888887 7777666533 345689999
Q ss_pred EEcCc-eeEEEeCCHHHHHHHHHHHHHHH
Q 002748 94 IYNDR-SLDLICKDKDEAEVWFSGLKALI 121 (885)
Q Consensus 94 i~~~r-tLdLva~~~~e~~~Wv~gL~~Li 121 (885)
..+++ ++-|.|++++|++.|+..|+.++
T Consensus 73 ~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 73 KTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 99886 99999999999999999998875
No 41
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=97.19 E-value=0.004 Score=57.61 Aligned_cols=90 Identities=17% Similarity=0.342 Sum_probs=62.2
Q ss_pred eEEEEecC--CCceeEEEEEeCCCCeEEEecCC----cceeEEccccc---eeeccccChhhhcCCCCCCCCcEEEEEEc
Q 002748 26 CLLKYGRR--GKPKFCPFRLSNDESVLIWFSGK----EEKHLKLSHVS---RIISGQRTPIFQRYPRPEKEYQSFSLIYN 96 (885)
Q Consensus 26 ~l~K~~~~--~kp~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~---eVr~G~~t~~f~~~~~~~~~~~~FSii~~ 96 (885)
.|.|-+.+ ..=+.|.|.|.. ..|.|+..+ +...|+|.++. +|..+..... ......||.|+..
T Consensus 4 ~L~K~g~~~~k~wkkRwFvL~~--~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~------~~~~~~~F~i~t~ 75 (103)
T cd01251 4 FMEKTGPKHTEGFKKRWFTLDD--RRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGT------QGNHWYGVTLVTP 75 (103)
T ss_pred eEEecCCCCCCCceeEEEEEeC--CEEEEECCCCCcCcCcEEEeeccccceeEeccCCccc------cccccceEEEEeC
Confidence 46666543 223889999984 578888743 35568887654 3443321110 0111249999999
Q ss_pred CceeEEEeCCHHHHHHHHHHHHHHHHc
Q 002748 97 DRSLDLICKDKDEAEVWFSGLKALISR 123 (885)
Q Consensus 97 ~rtLdLva~~~~e~~~Wv~gL~~Li~~ 123 (885)
+|+.-|.|++++|++.|+..|+..|..
T Consensus 76 ~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 76 ERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998864
No 42
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.17 E-value=0.0035 Score=57.53 Aligned_cols=89 Identities=21% Similarity=0.339 Sum_probs=62.9
Q ss_pred HHhcCCeEEEEecCCCceeEEEEEeCCCCeEEEecCC--------cceeEEccccceeeccccChhhhcCCCCCCCCcEE
Q 002748 20 ALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGK--------EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSF 91 (885)
Q Consensus 20 ~L~~G~~l~K~~~~~kp~~r~f~l~~d~~~l~W~~~~--------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~F 91 (885)
++++|. |+|+++++ ++.|.|+|=.| .|++.... ....|+|+++. |+..... .....||
T Consensus 2 ~ikEG~-L~K~~~k~-~~~R~~FLFnD--~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~---------~~~~~~F 67 (99)
T cd01220 2 FIRQGC-LLKLSKKG-LQQRMFFLFSD--LLLYTSKSPTDQNSFRILGHLPLRGML-TEESEHE---------WGVPHCF 67 (99)
T ss_pred eeeEEE-EEEEeCCC-CceEEEEEccc--eEEEEEeecCCCceEEEEEEEEcCceE-EeeccCC---------cCCceeE
Confidence 345565 56777774 78899999888 56665421 23447776663 4433221 1224699
Q ss_pred EEEEcCceeEEEeCCHHHHHHHHHHHHHHHH
Q 002748 92 SLIYNDRSLDLICKDKDEAEVWFSGLKALIS 122 (885)
Q Consensus 92 Sii~~~rtLdLva~~~~e~~~Wv~gL~~Li~ 122 (885)
.|.-..+++-|.|.+++|.+.|+..|+.-|.
T Consensus 68 ~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 68 TIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 9998889999999999999999999987664
No 43
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.10 E-value=0.0047 Score=56.92 Aligned_cols=89 Identities=22% Similarity=0.368 Sum_probs=61.0
Q ss_pred HHhcCCeEEEEecC-CCceeEEEEEeCCCCeEEEecCC----c-----ceeEEccccceeeccccChhhhcCCCCCCCCc
Q 002748 20 ALKKGACLLKYGRR-GKPKFCPFRLSNDESVLIWFSGK----E-----EKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQ 89 (885)
Q Consensus 20 ~L~~G~~l~K~~~~-~kp~~r~f~l~~d~~~l~W~~~~----~-----~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~ 89 (885)
++++|. |+|.+++ .+++.|+|+|=.| .|+.+..+ . ...|+|+++. |... .......
T Consensus 2 ~ikeG~-L~K~~~~~~~~k~RyffLFnd--~Ll~~~~~~~~~~~~y~~~~~i~l~~~~-v~~~----------~~~~~~~ 67 (101)
T cd01219 2 LLKEGS-VLKISSTTEKTEERYLFLFND--LLLYCVPRKMIGGSKFKVRARIDVSGMQ-VCEG----------DNLERPH 67 (101)
T ss_pred cccceE-EEEEecCCCCceeEEEEEeCC--EEEEEEcccccCCCcEEEEEEEecccEE-EEeC----------CCCCcCc
Confidence 355665 4677665 5789999999888 44444322 1 1225554422 2211 1123468
Q ss_pred EEEEEEcCceeEEEeCCHHHHHHHHHHHHHHHH
Q 002748 90 SFSLIYNDRSLDLICKDKDEAEVWFSGLKALIS 122 (885)
Q Consensus 90 ~FSii~~~rtLdLva~~~~e~~~Wv~gL~~Li~ 122 (885)
+|.|...+|++.|.|++++|.+.|+..|+..|.
T Consensus 68 ~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 68 SFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred eEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 999999889999999999999999999998875
No 44
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=97.00 E-value=0.0062 Score=55.00 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=55.8
Q ss_pred eEEEEecCCC-ceeEEEEEeCCCCeEEEecCCc------ceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcC-
Q 002748 26 CLLKYGRRGK-PKFCPFRLSNDESVLIWFSGKE------EKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND- 97 (885)
Q Consensus 26 ~l~K~~~~~k-p~~r~f~l~~d~~~l~W~~~~~------~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~- 97 (885)
.|.|.+..-+ =+.|.|.|. + +.|.|+..+. ...|+|....-+. ...+..+|.|+..+
T Consensus 4 ~L~K~~~~~k~Wk~RwFvL~-~-g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~-------------~~~~~~~F~i~~~~~ 68 (91)
T cd01247 4 VLSKWTNYINGWQDRYFVLK-E-GNLSYYKSEAEKSHGCRGSIFLKKAIIAA-------------HEFDENRFDISVNEN 68 (91)
T ss_pred EEEEeccccCCCceEEEEEE-C-CEEEEEecCccCcCCCcEEEECcccEEEc-------------CCCCCCEEEEEeCCC
Confidence 5777765422 377889995 4 6888886432 4567776532111 12235799998877
Q ss_pred ceeEEEeCCHHHHHHHHHHHHH
Q 002748 98 RSLDLICKDKDEAEVWFSGLKA 119 (885)
Q Consensus 98 rtLdLva~~~~e~~~Wv~gL~~ 119 (885)
+++.|.|.+++|++.|+.+|+.
T Consensus 69 r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 69 VVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred eEEEEEeCCHHHHHHHHHHHhh
Confidence 9999999999999999999863
No 45
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.82 E-value=0.0054 Score=55.00 Aligned_cols=72 Identities=26% Similarity=0.548 Sum_probs=51.9
Q ss_pred CCCceeEEEEEeCCCCeEEEecCC----cceeEEcccc--ceeeccccChhhhcCCCCCCCCcEEEEEE-------cC-c
Q 002748 33 RGKPKFCPFRLSNDESVLIWFSGK----EEKHLKLSHV--SRIISGQRTPIFQRYPRPEKEYQSFSLIY-------ND-R 98 (885)
Q Consensus 33 ~~kp~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I--~eVr~G~~t~~f~~~~~~~~~~~~FSii~-------~~-r 98 (885)
+|..|.|.|.|..+ +|.|+... ++.-|+|+++ ++|-.|.-+ ...||.|+. ++ |
T Consensus 16 ~ggsK~~WFVLt~~--~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~s-----------k~~~FeLfnpd~rnvykd~k 82 (110)
T cd01256 16 KGGSKDYWFVLTSE--SLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMS-----------RNHKFALFYPDGRNVYKDYK 82 (110)
T ss_pred cCCCcceEEEEecc--eeeeecccccccccceeeccccEEEeecccccC-----------CCcEEEEEcCcccccccchh
Confidence 45678899999887 89999843 2333888764 344444222 237899885 45 9
Q ss_pred eeEEEeCCHHHHHHHHHHH
Q 002748 99 SLDLICKDKDEAEVWFSGL 117 (885)
Q Consensus 99 tLdLva~~~~e~~~Wv~gL 117 (885)
+|+|.|++.||.+.|...+
T Consensus 83 ~lel~~~~~e~vdswkasf 101 (110)
T cd01256 83 QLELGCETLEEVDSWKASF 101 (110)
T ss_pred eeeecCCCHHHHHHHHHHH
Confidence 9999999999999998654
No 46
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.78 E-value=0.0074 Score=52.80 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=55.6
Q ss_pred CCceeEEEEEeCCCCeEEEecCC------cceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcC-ceeEEEeCC
Q 002748 34 GKPKFCPFRLSNDESVLIWFSGK------EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKD 106 (885)
Q Consensus 34 ~kp~~r~f~l~~d~~~l~W~~~~------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~-rtLdLva~~ 106 (885)
+..+.|++.|..+ ..+++.... ....|+|.+ ..|....... ....+|.|+... +.+.|.|++
T Consensus 14 ~~w~~~~~~L~~~-~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~---------~~~~~f~i~~~~~~~~~~~~~s 82 (96)
T cd00821 14 KGWKRRWFVLFND-LLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS---------GRKNCFEIRTPDGRSYLLQAES 82 (96)
T ss_pred CCccEEEEEEECC-EEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC---------CCCcEEEEecCCCcEEEEEeCC
Confidence 4567888888866 344444422 345577777 5666554443 467999999988 999999999
Q ss_pred HHHHHHHHHHHHH
Q 002748 107 KDEAEVWFSGLKA 119 (885)
Q Consensus 107 ~~e~~~Wv~gL~~ 119 (885)
+++++.|+..|+.
T Consensus 83 ~~~~~~W~~~l~~ 95 (96)
T cd00821 83 EEEREEWIEALQS 95 (96)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999975
No 47
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=96.76 E-value=0.00052 Score=78.67 Aligned_cols=68 Identities=22% Similarity=0.477 Sum_probs=59.0
Q ss_pred cccccCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHhhhcccccCCC
Q 002748 654 GVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFDTDG 724 (885)
Q Consensus 654 ~~d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~l~~~~~~~~ 724 (885)
..+...|..|+.+|+..+++||||..||.+.|..|+..+. -+..+.++..|||..||.....+..+.+
T Consensus 412 ~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~---~l~~~~s~ssrv~~~~~~~~~~a~~s~~ 479 (623)
T KOG4424|consen 412 DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMA---KLSYDNSRSSRVCMDRYLTPSGAPGSPP 479 (623)
T ss_pred ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhh---hhcccccchhhhhhhhccCCCCCCCCch
Confidence 6788899999999999999999999999999999999984 3444667899999999998877776544
No 48
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.65 E-value=0.017 Score=51.42 Aligned_cols=78 Identities=22% Similarity=0.337 Sum_probs=54.3
Q ss_pred EEEEe-cCCCceeEEEEEeCCCCeEEEecCC------cceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcC-c
Q 002748 27 LLKYG-RRGKPKFCPFRLSNDESVLIWFSGK------EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND-R 98 (885)
Q Consensus 27 l~K~~-~~~kp~~r~f~l~~d~~~l~W~~~~------~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~-r 98 (885)
|.|.+ ..+.-+.|+|.|.. ..|.++.+. ....|.|.... |... .....+|.|...+ +
T Consensus 5 L~k~~~~~~~W~~r~~vl~~--~~L~~~~~~~~~~~~~~~~i~l~~~~-~~~~------------~~~~~~F~i~~~~~~ 69 (91)
T cd01246 5 LLKWTNYLKGWQKRWFVLDN--GLLSYYKNKSSMRGKPRGTILLSGAV-ISED------------DSDDKCFTIDTGGDK 69 (91)
T ss_pred EEEecccCCCceeeEEEEEC--CEEEEEecCccCCCCceEEEEeceEE-EEEC------------CCCCcEEEEEcCCCC
Confidence 45554 33556888899984 578777633 23446666542 2211 1125799999987 9
Q ss_pred eeEEEeCCHHHHHHHHHHHHH
Q 002748 99 SLDLICKDKDEAEVWFSGLKA 119 (885)
Q Consensus 99 tLdLva~~~~e~~~Wv~gL~~ 119 (885)
++-|.|++.+|++.|+.+|+.
T Consensus 70 ~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 70 TLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred EEEEECCCHHHHHHHHHHHHh
Confidence 999999999999999999874
No 49
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=96.55 E-value=0.028 Score=51.77 Aligned_cols=74 Identities=15% Similarity=0.260 Sum_probs=57.0
Q ss_pred ceeEEEEEeCCC----CeEEEecC---------CcceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcCceeEE
Q 002748 36 PKFCPFRLSNDE----SVLIWFSG---------KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDL 102 (885)
Q Consensus 36 p~~r~f~l~~d~----~~l~W~~~---------~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~rtLdL 102 (885)
-+.|+|.|..+. ..|.|+.+ ++.+.|+|.++..|..-.+ .....+|.|+..+++.-|
T Consensus 14 ~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d----------~k~~~~f~i~t~dr~f~l 83 (101)
T cd01257 14 MHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD----------AKHRHLIALYTRDEYFAV 83 (101)
T ss_pred cEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc----------cccCeEEEEEeCCceEEE
Confidence 466999998662 37888863 2456799999988863111 123479999999999999
Q ss_pred EeCCHHHHHHHHHHHHH
Q 002748 103 ICKDKDEAEVWFSGLKA 119 (885)
Q Consensus 103 va~~~~e~~~Wv~gL~~ 119 (885)
+|++++|.+.|+..|.-
T Consensus 84 ~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 84 AAENEAEQDSWYQALLE 100 (101)
T ss_pred EeCCHHHHHHHHHHHhh
Confidence 99999999999998864
No 50
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.50 E-value=0.026 Score=50.47 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=49.0
Q ss_pred CCceeEEEEEeCCCCeEEEecCCc------ceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcCceeEEEeCCH
Q 002748 34 GKPKFCPFRLSNDESVLIWFSGKE------EKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDK 107 (885)
Q Consensus 34 ~kp~~r~f~l~~d~~~l~W~~~~~------~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~rtLdLva~~~ 107 (885)
+.-+.|+|.|.. +.|.++.... ...|.|..+. |..-... .....||.|+..++++-|.|++.
T Consensus 14 ~~W~kr~~~L~~--~~l~~y~~~~~~~~~~~~~i~l~~~~-v~~~~~~---------~~~~~~f~i~~~~~~~~f~a~s~ 81 (94)
T cd01250 14 KEWKKRWFVLKN--GQLTYHHRLKDYDNAHVKEIDLRRCT-VRHNGKQ---------PDRRFCFEVISPTKTWHFQADSE 81 (94)
T ss_pred CCceEEEEEEeC--CeEEEEcCCcccccccceEEeccceE-EecCccc---------cCCceEEEEEcCCcEEEEECCCH
Confidence 446888899983 5676665322 2345554321 1111111 12457999999999999999999
Q ss_pred HHHHHHHHHHH
Q 002748 108 DEAEVWFSGLK 118 (885)
Q Consensus 108 ~e~~~Wv~gL~ 118 (885)
++++.|+.+|+
T Consensus 82 ~~~~~Wi~al~ 92 (94)
T cd01250 82 EERDDWISAIQ 92 (94)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 51
>PF15409 PH_8: Pleckstrin homology domain
Probab=96.48 E-value=0.022 Score=51.06 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=55.4
Q ss_pred EEEE-ecCCCc-eeEEEEEeCCCCeEEEecCCc----ceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcCcee
Q 002748 27 LLKY-GRRGKP-KFCPFRLSNDESVLIWFSGKE----EKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSL 100 (885)
Q Consensus 27 l~K~-~~~~kp-~~r~f~l~~d~~~l~W~~~~~----~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~rtL 100 (885)
|+|- +.+.+- +.|+|.|+.+.+.|.++.... ..+|+|.. .. ....++.++|.|-.++..-
T Consensus 3 llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~------a~--------is~~~~~~~I~idsg~~i~ 68 (89)
T PF15409_consen 3 LLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSL------AV--------ISANKKSRRIDIDSGDEIW 68 (89)
T ss_pred ceeeccccCCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccc------eE--------EEecCCCCEEEEEcCCeEE
Confidence 4554 333333 889999998889999986332 23344421 10 0112356899999888999
Q ss_pred EEEeCCHHHHHHHHHHHHH
Q 002748 101 DLICKDKDEAEVWFSGLKA 119 (885)
Q Consensus 101 dLva~~~~e~~~Wv~gL~~ 119 (885)
+|-|.++++++.|+..|+.
T Consensus 69 hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 69 HLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred EEEcCCHHHHHHHHHHHHh
Confidence 9999999999999999985
No 52
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=96.37 E-value=0.03 Score=50.83 Aligned_cols=72 Identities=24% Similarity=0.288 Sum_probs=52.3
Q ss_pred CceeEEEEEeCCCCeEEEecCC----cceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcC-ceeEEEeCCHHH
Q 002748 35 KPKFCPFRLSNDESVLIWFSGK----EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDE 109 (885)
Q Consensus 35 kp~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~-rtLdLva~~~~e 109 (885)
.=+.|+|.|.. ..|.++... ....|+|... .|..-. +.....||.|...+ +++-|.|+|++|
T Consensus 19 ~WkkrwfvL~~--~~L~yyk~~~~~~~~~~I~L~~~-~v~~~~----------~~~k~~~F~I~~~~~~~~~f~a~s~~e 85 (96)
T cd01260 19 KWARRWFVLKG--TTLYWYRSKQDEKAEGLIFLSGF-TIESAK----------EVKKKYAFKVCHPVYKSFYFAAETLDD 85 (96)
T ss_pred CceeEEEEEEC--CEEEEECCCCCCccceEEEccCC-EEEEch----------hcCCceEEEECCCCCcEEEEEeCCHHH
Confidence 45788899985 478777632 3556888764 232211 12245799999888 999999999999
Q ss_pred HHHHHHHHHH
Q 002748 110 AEVWFSGLKA 119 (885)
Q Consensus 110 ~~~Wv~gL~~ 119 (885)
++.|+..|+.
T Consensus 86 ~~~Wi~ai~~ 95 (96)
T cd01260 86 LSQWVNHLIT 95 (96)
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 53
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=95.91 E-value=0.081 Score=46.43 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=56.2
Q ss_pred CCceeEEEEEeCCCCeEEEecCC---cc--eeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEc---CceeEEEeC
Q 002748 34 GKPKFCPFRLSNDESVLIWFSGK---EE--KHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYN---DRSLDLICK 105 (885)
Q Consensus 34 ~kp~~r~f~l~~d~~~l~W~~~~---~~--~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~---~rtLdLva~ 105 (885)
+..+.|+|.|..+ .|..+..+ .. ..+++..+. |..+.... ....+|.|++. .+.+-|.|+
T Consensus 17 ~~w~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~---------~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 17 KRWKRRWFFLFDD--GLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGS---------DDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred cCceeeEEEEECC--EEEEEEcCCCCcCCCCEEEccceE-EEECCCCC---------CCCceEEEECCCCCcEEEEEEcC
Confidence 5678888999865 66666532 22 357888877 76665543 34679999998 699999999
Q ss_pred CHHHHHHHHHHHHH
Q 002748 106 DKDEAEVWFSGLKA 119 (885)
Q Consensus 106 ~~~e~~~Wv~gL~~ 119 (885)
+.++++.|+..|+.
T Consensus 85 ~~~~~~~W~~al~~ 98 (99)
T cd00900 85 SEEEAQEWVEALQQ 98 (99)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999864
No 54
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.80 E-value=0.086 Score=48.84 Aligned_cols=88 Identities=24% Similarity=0.336 Sum_probs=61.1
Q ss_pred hcCCeEEEEecCCCceeEEEEEeCCCCeEEEecC----C---cceeEEccccceeeccccChhhhcCCCCCCCCcEEEEE
Q 002748 22 KKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSG----K---EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLI 94 (885)
Q Consensus 22 ~~G~~l~K~~~~~kp~~r~f~l~~d~~~l~W~~~----~---~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii 94 (885)
++|. |+|+.|+ +|+.|.|+|=.| .|++-+- + ....++|.++. |..-.+. ..-..+|.|.
T Consensus 6 ~eG~-L~K~~rk-~~~~R~ffLFnD--~LvY~~~~~~~~~~~~~~~i~L~~~~-v~~~~d~---------~~~~n~f~I~ 71 (104)
T cd01218 6 GEGV-LTKMCRK-KPKQRQFFLFND--ILVYGNIVISKKKYNKQHILPLEGVQ-VESIEDD---------GIERNGWIIK 71 (104)
T ss_pred ecCc-EEEeecC-CCceEEEEEecC--EEEEEEeecCCceeeEeeEEEccceE-EEecCCc---------ccccceEEEe
Confidence 3444 6788866 678899999988 6677531 1 12346666542 2111111 2235789999
Q ss_pred EcCceeEEEeCCHHHHHHHHHHHHHHHHc
Q 002748 95 YNDRSLDLICKDKDEAEVWFSGLKALISR 123 (885)
Q Consensus 95 ~~~rtLdLva~~~~e~~~Wv~gL~~Li~~ 123 (885)
...|++-+.|++++|-+.|+..|+.-+..
T Consensus 72 ~~~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 72 TPTKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred cCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877664
No 55
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.76 E-value=0.093 Score=50.19 Aligned_cols=87 Identities=25% Similarity=0.308 Sum_probs=57.0
Q ss_pred eEEEEecC-CCceeEEEEEeCCCCeEEEecCC----cceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcC---
Q 002748 26 CLLKYGRR-GKPKFCPFRLSNDESVLIWFSGK----EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND--- 97 (885)
Q Consensus 26 ~l~K~~~~-~kp~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~--- 97 (885)
.|.|-+.. +.-+.|+|.|.. ..|.|+... ....|+|+++. |..... .....||.|+..+
T Consensus 5 ~L~K~~~~~~~WkkRwfvL~~--~~L~yyk~~~~~~~~g~I~L~~~~-v~~~~~----------~~~~~~F~i~~~~~~~ 71 (125)
T cd01252 5 WLLKQGGRVKTWKRRWFILTD--NCLYYFEYTTDKEPRGIIPLENVS-IREVED----------PSKPFCFELFSPSDKQ 71 (125)
T ss_pred EEEEeCCCCCCeEeEEEEEEC--CEEEEEcCCCCCCceEEEECCCcE-EEEccc----------CCCCeeEEEECCcccc
Confidence 45565433 445888899975 478887632 36668888643 332211 1124577665522
Q ss_pred ------------------ceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 002748 98 ------------------RSLDLICKDKDEAEVWFSGLKALISRSH 125 (885)
Q Consensus 98 ------------------rtLdLva~~~~e~~~Wv~gL~~Li~~~~ 125 (885)
++.-|.|++++|++.|+..|+..+....
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~ 117 (125)
T cd01252 72 QIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNP 117 (125)
T ss_pred ccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCc
Confidence 4566999999999999999999887543
No 56
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.71 E-value=0.091 Score=49.28 Aligned_cols=93 Identities=13% Similarity=0.254 Sum_probs=62.8
Q ss_pred HHHhcCCeEEEEe-cCCCceeEEEEEeCCCCeEEEecCCcce---------eEEcccc-----ceeeccccChhhhcCCC
Q 002748 19 TALKKGACLLKYG-RRGKPKFCPFRLSNDESVLIWFSGKEEK---------HLKLSHV-----SRIISGQRTPIFQRYPR 83 (885)
Q Consensus 19 ~~L~~G~~l~K~~-~~~kp~~r~f~l~~d~~~l~W~~~~~~~---------~i~l~~I-----~eVr~G~~t~~f~~~~~ 83 (885)
+++++|.. +|+. ++++++.|+|+|=.| .|+.+..+..+ .+.+.+. .+|.--.++
T Consensus 3 elI~EG~L-~ki~~~~~~~q~R~~FLFd~--~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~-------- 71 (112)
T cd01261 3 EFIMEGTL-TRVGPSKKAKHERHVFLFDG--LMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDS-------- 71 (112)
T ss_pred cccccCcE-EEEecccCCcceEEEEEecC--eEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCC--------
Confidence 35566765 5665 357789999999877 56666532211 2333333 333322222
Q ss_pred CCCCCcEEEEEEc-CceeEEEeCCHHHHHHHHHHHHHHHHc
Q 002748 84 PEKEYQSFSLIYN-DRSLDLICKDKDEAEVWFSGLKALISR 123 (885)
Q Consensus 84 ~~~~~~~FSii~~-~rtLdLva~~~~e~~~Wv~gL~~Li~~ 123 (885)
......|-|+.. .+++-|.|++++|-+.|+..|..++.+
T Consensus 72 -~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 72 -SEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred -cccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 223679999986 489999999999999999999988754
No 57
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=95.68 E-value=0.02 Score=67.40 Aligned_cols=98 Identities=23% Similarity=0.320 Sum_probs=74.3
Q ss_pred HhcCCeEEEEe--cC--CC--ceeEEEEEeCCCCeEEEecC---CcceeEEccccceeeccccChhhhcCCCCCCCCcEE
Q 002748 21 LKKGACLLKYG--RR--GK--PKFCPFRLSNDESVLIWFSG---KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSF 91 (885)
Q Consensus 21 L~~G~~l~K~~--~~--~k--p~~r~f~l~~d~~~l~W~~~---~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~F 91 (885)
+++|-.|+|+- |+ ++ -|.|+|+|... .|.|..+ ++...|+|++|+.|-.=.+ ..+.-..+|
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~--~Ls~~Ksp~~q~~~~Ipl~nI~avEklee--------~sF~~knv~ 634 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTE--ELSYAKSPGKQPIYTIPLSNIRAVEKLEE--------KSFKMKNVF 634 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEeccc--eeEEecCCccCcccceeHHHHHHHHHhhh--------hccCCCceE
Confidence 45777888882 22 22 36788998876 7899873 3566699999887643221 125667899
Q ss_pred EEEEcCceeEEEeCCHHHHHHHHHHHHHHHHcccccc
Q 002748 92 SLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRK 128 (885)
Q Consensus 92 Sii~~~rtLdLva~~~~e~~~Wv~gL~~Li~~~~~~~ 128 (885)
.|||.+|+|-|.|++-.|++.|+..|+......+++.
T Consensus 635 qVV~~drtly~Q~~n~vEandWldaL~kvs~~N~~rL 671 (800)
T KOG2059|consen 635 QVVHTDRTLYVQAKNCVEANDWLDALRKVSCCNQNRL 671 (800)
T ss_pred EEEecCcceeEecCCchHHHHHHHHHHHHhccCcchh
Confidence 9999999999999999999999999998887777643
No 58
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=95.30 E-value=0.12 Score=48.47 Aligned_cols=93 Identities=25% Similarity=0.413 Sum_probs=48.1
Q ss_pred eEEEEecC-CCc-eeEEEEEeCCCCeEEEecC-C--cceeEEccccce-eeccc---cChhhhc------CCCCCCCCcE
Q 002748 26 CLLKYGRR-GKP-KFCPFRLSNDESVLIWFSG-K--EEKHLKLSHVSR-IISGQ---RTPIFQR------YPRPEKEYQS 90 (885)
Q Consensus 26 ~l~K~~~~-~kp-~~r~f~l~~d~~~l~W~~~-~--~~~~i~l~~I~e-Vr~G~---~t~~f~~------~~~~~~~~~~ 90 (885)
.|.|-..+ +++ +.|.|-|..| +.|.++.. . ....|..+.... ++.|. ..+.+.. ..........
T Consensus 4 ~l~K~~~~~~kgWk~RwFiL~k~-~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (112)
T PF15413_consen 4 YLYKWGNKFGKGWKKRWFILRKD-GVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHLKV 82 (112)
T ss_dssp EEEE--TTS-S--EEEEEEEE-T-TEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SSEE
T ss_pred eEEEecCCCCcCccccEEEEEeC-CEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCCCC
Confidence 35566666 555 6788888874 88888874 1 111122211111 11111 1111111 1233556678
Q ss_pred EEEEEcCceeEEEeCCHHHHHHHHHHHHH
Q 002748 91 FSLIYNDRSLDLICKDKDEAEVWFSGLKA 119 (885)
Q Consensus 91 FSii~~~rtLdLva~~~~e~~~Wv~gL~~ 119 (885)
|+|..+.|+|.|.|++.+|...|+..|+.
T Consensus 83 ~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 83 FSIFTPTKTFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp EEEE-SS-EEEEEESSHHHHHHHHHHHHH
T ss_pred cEEECCCcEEEEEECCHHHHHHHHHHHHh
Confidence 88888889999999999999999999874
No 59
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.99 E-value=0.15 Score=46.98 Aligned_cols=92 Identities=14% Similarity=0.154 Sum_probs=51.8
Q ss_pred HhcCCeEEEEecCCCceeEEEEEeCCCCeEEEecCCc---c-eeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEc
Q 002748 21 LKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKE---E-KHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYN 96 (885)
Q Consensus 21 L~~G~~l~K~~~~~kp~~r~f~l~~d~~~l~W~~~~~---~-~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~ 96 (885)
+++|-...+-...+.=+.|+|.|..| +.|.++..++ + ..++|..+ .|+.+.--. .+.....+|.|.+-
T Consensus 2 ~k~G~L~K~g~~~~~Wk~R~f~L~~~-~~l~~yk~~~~~~~~~~i~l~~~-~v~~~~~~~------~~~~~~~~F~i~~~ 73 (102)
T cd01241 2 VKEGWLHKRGEYIKTWRPRYFLLKSD-GSFIGYKEKPEDGDPFLPPLNNF-SVAECQLMK------TERPRPNTFIIRCL 73 (102)
T ss_pred cEEEEEEeecCCCCCCeeEEEEEeCC-CeEEEEecCCCccCccccccCCe-EEeeeeeee------ccCCCcceEEEEec
Confidence 34554444433334458899999987 5665554321 1 13455443 222211000 01122358999852
Q ss_pred C--cee--EEEeCCHHHHHHHHHHHHHH
Q 002748 97 D--RSL--DLICKDKDEAEVWFSGLKAL 120 (885)
Q Consensus 97 ~--rtL--dLva~~~~e~~~Wv~gL~~L 120 (885)
+ .++ .+.|++++|++.|+.+|+.+
T Consensus 74 ~~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 74 QWTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred cCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 2 233 56799999999999999865
No 60
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.92 E-value=0.21 Score=45.83 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=51.5
Q ss_pred eeEEEEEeC--CCCeEEEecC-C---cceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcCc-eeEEEeCCHHH
Q 002748 37 KFCPFRLSN--DESVLIWFSG-K---EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDR-SLDLICKDKDE 109 (885)
Q Consensus 37 ~~r~f~l~~--d~~~l~W~~~-~---~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~r-tLdLva~~~~e 109 (885)
+.|.|.|.. ....|.+++. + +...|+|.++ .|++-++.. .....||.|+...+ +.-.+|.+.+|
T Consensus 17 K~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~-~V~~v~ds~--------~~r~~cFel~~~~~~~~y~~~a~~~e 87 (98)
T cd01245 17 KTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA-YLYPVHDSL--------FGRPNCFQIVERALPTVYYSCRSSEE 87 (98)
T ss_pred ceeEEEEecCCCCceEEEEcCCCCCCccceeecccc-EEEEccccc--------cCCCeEEEEecCCCCeEEEEeCCHHH
Confidence 667788853 2366766652 2 2334677777 777766641 22358999999875 77777777799
Q ss_pred HHHHHHHHHH
Q 002748 110 AEVWFSGLKA 119 (885)
Q Consensus 110 ~~~Wv~gL~~ 119 (885)
++.|+..|++
T Consensus 88 r~~Wi~~l~~ 97 (98)
T cd01245 88 RDKWIESLQA 97 (98)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 61
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.80 E-value=1 Score=58.44 Aligned_cols=252 Identities=17% Similarity=0.206 Sum_probs=132.1
Q ss_pred cEEEEeecCcEEEEEEcCCcEEEEcCCCCCCcccCCCCCcceeeeee--------------ecCCCCCc--e---EEEEe
Q 002748 357 NIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKR--------------VNGPLEGI--H---VSSIS 417 (885)
Q Consensus 357 ~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~--------------v~~~l~~~--~---Iv~Ia 417 (885)
....|.....+-++.+.+|+||.--... .+.........|.. |.+++.+. . +++=.
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~-----~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~ 564 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPA-----AQDNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDR 564 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccc-----ccCCCcceEeccccccccccccccccceeeccccCCCCeeeEEEecc
Confidence 5677887888999999999999864431 11112222222222 22222221 1 34446
Q ss_pred eCCceEEEEecCCeEEEeecCCCcccCCCCCccc-----ccceeeeccCCCeEEEEEeCCceEEEEEEeeecCCCccccC
Q 002748 418 CGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSV-----SIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCS 492 (885)
Q Consensus 418 cG~~ht~aLt~~G~Vy~wG~n~~GQLG~g~~~~~-----~~P~~V~~l~~~~I~~VacG~~ht~alte~~~~~s~~~~~~ 492 (885)
.|..|+++|.++|.=|.=|+|---.|-..+..-. ..|..+-.+ |..-.++|.
T Consensus 565 ~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ldl----------~r~G~v~L~------------- 621 (1774)
T PF11725_consen 565 QGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILDL----------GRAGLVGLQ------------- 621 (1774)
T ss_pred CCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhcc----------ccccceeec-------------
Confidence 6888999998888888888886555443322211 122222222 222233342
Q ss_pred CCcEEEEeCCCCC--------------------------------------CCCCCCCCceeecE---------EeeccC
Q 002748 493 SGKLFTWGDGDKG--------------------------------------RLGHGDKEAKLVPT---------CVAALV 525 (885)
Q Consensus 493 ~G~vy~WG~n~~G--------------------------------------QLG~g~~~~~~~P~---------~V~~l~ 525 (885)
+|+|+.|-....+ -+-+++......|. .+..+.
T Consensus 622 ~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~ 701 (1774)
T PF11725_consen 622 DGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALEGLE 701 (1774)
T ss_pred cceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCccccCCC
Confidence 4555555322111 11111111111111 123334
Q ss_pred CCCeEEEE-ecCCEEEEEecCCeEEEEeCCCCCcCCCCCCCCCCCeeeccccCCCcEEEEEecCCc-eeeeecCCeEEEe
Q 002748 526 EPNFCRVA-CGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYH-VAVLTSKTEVYTW 603 (885)
Q Consensus 526 ~~~I~~Ia-~G~~ht~aLt~dG~Vy~wG~N~~GQLG~~~~~~~~p~~v~~~l~~~~I~~Ia~G~~H-t~aLt~~G~Vy~W 603 (885)
+..|..++ .+.++.++|++.|++-..= . -| .|..+...--...|+.|++-..| .+|+|.+|++|.-
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h~--k---~g-------~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAHQ--K---PG-------RPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCcccccc--C---CC-------CCccCCCCCCCcchhheeeccccceeEecCCCceeec
Confidence 44455544 3667777777777765532 0 01 13333322224569999998886 5789999999984
Q ss_pred cCCCCCCCCCCCCCCCCcCEEecccCCCcEEEEEcCCCccceeeee
Q 002748 604 GKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAICLH 649 (885)
Q Consensus 604 G~n~~GQLG~g~~~~~~~P~~V~~l~~~~V~~IacG~~hT~al~~~ 649 (885)
=.-..-+.-.+ .......++|....+..|..+....+|.+.+...
T Consensus 770 ~k~~WQ~~~~~-~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~ 814 (1774)
T PF11725_consen 770 PKEAWQGNAEG-DQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIE 814 (1774)
T ss_pred CHHHhhCcccC-CccccCceeccCCCCCchhhhhcCCCCceEEEec
Confidence 33221111111 1112445555555677788888888888887643
No 62
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.40 E-value=0.17 Score=61.20 Aligned_cols=107 Identities=19% Similarity=0.379 Sum_probs=83.1
Q ss_pred HHHHHhcCCeEEEEecC---CCceeEEEEEeCCCCeEEEec-CCcceeEEccccceeeccccChhhhc---------C-C
Q 002748 17 AITALKKGACLLKYGRR---GKPKFCPFRLSNDESVLIWFS-GKEEKHLKLSHVSRIISGQRTPIFQR---------Y-P 82 (885)
Q Consensus 17 ~l~~L~~G~~l~K~~~~---~kp~~r~f~l~~d~~~l~W~~-~~~~~~i~l~~I~eVr~G~~t~~f~~---------~-~ 82 (885)
....|+.|+.++|+--- +.| ..+++|+..-.|.|.- .++--.++|..|++.|.|+....=.+ - .
T Consensus 13 v~~~L~~G~~fikwddest~~~~--v~lrvDp~gffLYW~~q~~e~~~ldi~~i~d~r~g~~a~~pkd~klr~~~~~~~~ 90 (1189)
T KOG1265|consen 13 VTDILRDGSKFIKWDDESTTSTP--VTLRVDPNGFFLYWTYQNKEVDNLDISSIRDARTGRYAKLPKDPKLREVLELGPP 90 (1189)
T ss_pred ccHHHcCCceEEEeccccccccc--eEEEECCCceEEEEecCCCceeehhhhHHhhhhcchhccCCCCcccchheecCCc
Confidence 35689999999999333 344 7789999988889986 45667799999999999976632211 1 2
Q ss_pred CCCCCCcEEEEEEcC-----ceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 002748 83 RPEKEYQSFSLIYND-----RSLDLICKDKDEAEVWFSGLKALISRSH 125 (885)
Q Consensus 83 ~~~~~~~~FSii~~~-----rtLdLva~~~~e~~~Wv~gL~~Li~~~~ 125 (885)
+...+..-.+|++|. ..++|||..++++..|..+|-.|+....
T Consensus 91 d~s~eek~lTVvsG~d~vN~~f~nfv~~~~~~ak~w~~~~~~l~~~~~ 138 (1189)
T KOG1265|consen 91 DRSLEEKTLTVVSGPDLVNLTFLNFVAMQENVAKLWTAGLLKLAKSLL 138 (1189)
T ss_pred ccccccceEEEEecCCcccceEEEEeeeeHHHHHHHHHHHHHHHHHHH
Confidence 236678899999986 7799999999999999999987765543
No 63
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=94.03 E-value=0.72 Score=42.84 Aligned_cols=97 Identities=20% Similarity=0.306 Sum_probs=59.2
Q ss_pred CeEEEEecCCCceeEEE--EEeCCCCeEEEec---------CCcceeEEccccceeeccccChhhhcCCCCCCCCcEEEE
Q 002748 25 ACLLKYGRRGKPKFCPF--RLSNDESVLIWFS---------GKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSL 93 (885)
Q Consensus 25 ~~l~K~~~~~kp~~r~f--~l~~d~~~l~W~~---------~~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSi 93 (885)
+.|+|..|+|.-|.|.+ +++.. .+++=.- +++++++-++=-.+|-.-. -+...+...+.+.|-|
T Consensus 1 ~eLlk~tr~G~l~~k~Vsvyink~-~qVilKmKskhv~Gafskkkk~VV~~V~~~~~awp----gr~~~e~~~~~~yfgL 75 (110)
T PF08458_consen 1 GELLKRTRKGDLHWKTVSVYINKK-GQVILKMKSKHVGGAFSKKKKSVVLDVCSEIPAWP----GRELREDGEERRYFGL 75 (110)
T ss_pred CcceEecCCCceEEEEEEEEECCC-cEEEEEeecchhhhhhhcCCceEEEEEccCcccCC----CcccccCCceEEEEEE
Confidence 35889999999888775 44554 5554432 2233333221111211110 0111122334566777
Q ss_pred EEcCceeEEEeCCHHHHHHHHHHHHHHHHcccc
Q 002748 94 IYNDRSLDLICKDKDEAEVWFSGLKALISRSHH 126 (885)
Q Consensus 94 i~~~rtLdLva~~~~e~~~Wv~gL~~Li~~~~~ 126 (885)
-.....+.|.|+|..+.+.|+.|+++||.....
T Consensus 76 ~T~~G~vEfec~~~~~~k~W~~gI~~mL~~~~~ 108 (110)
T PF08458_consen 76 KTAQGVVEFECDSQREYKRWVQGIQHMLSQVAE 108 (110)
T ss_pred EecCcEEEEEeCChhhHHHHHHHHHHHHHHhhc
Confidence 777799999999999999999999999987543
No 64
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.97 E-value=0.5 Score=45.05 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=58.0
Q ss_pred ceeEEEEEeCCCCeEEEecCC----cceeEEccccceeeccccChhhhcC--CCCCCCCcEEEEEEcCceeEEEeCCHHH
Q 002748 36 PKFCPFRLSNDESVLIWFSGK----EEKHLKLSHVSRIISGQRTPIFQRY--PRPEKEYQSFSLIYNDRSLDLICKDKDE 109 (885)
Q Consensus 36 p~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eVr~G~~t~~f~~~--~~~~~~~~~FSii~~~rtLdLva~~~~e 109 (885)
-+.|.|.|.+ +.|.++... ....|.++.--.|..|.....-... ++.......|.|...+|+|-|.|+|+.+
T Consensus 33 w~kRWFvlr~--s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~ 110 (121)
T cd01254 33 WQKRWFIVKE--SFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSSRK 110 (121)
T ss_pred CcceeEEEeC--CEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCCHHH
Confidence 3667788884 578777532 3445777777778877665321111 1223446789998899999999999999
Q ss_pred HHHHHHHHHH
Q 002748 110 AEVWFSGLKA 119 (885)
Q Consensus 110 ~~~Wv~gL~~ 119 (885)
++.|+..|+.
T Consensus 111 ~~~Wi~~i~~ 120 (121)
T cd01254 111 LKQWMASIED 120 (121)
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 65
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=92.80 E-value=0.012 Score=67.64 Aligned_cols=65 Identities=29% Similarity=0.788 Sum_probs=48.1
Q ss_pred eecccccc----cccCcccccc-CCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHhh
Q 002748 648 LHKWVSGV----DQSMCSGCRL-PFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNK 715 (885)
Q Consensus 648 ~~kwvs~~----d~s~C~~C~~-~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~ 715 (885)
.+.|+++. .-..|+-|-. -|..|.| +|||+.||...|.+|+..+.... .-..+-|.++||.|+..
T Consensus 313 l~nfq~darrafs~a~~~a~~R~~~kd~~R-k~~~~g~Ga~e~aa~ea~kgiqE--d~gse~~Adg~Dq~psv 382 (1141)
T KOG1811|consen 313 LHNFQPDARRAFSEAICMACCREHFKDFNR-KHHCRGCGALECAACEAKKGIQE--DCGSENPADGCDQCPSV 382 (1141)
T ss_pred hhhcChhhhhhhhhhHHHHHHHHHHHHHHH-hhhccccchHHHhHHHHhhhhhh--cccccCcccccccccch
Confidence 46788887 4566777544 4765555 59999999999999999985544 22336789999999954
No 66
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=92.63 E-value=0.069 Score=67.87 Aligned_cols=51 Identities=31% Similarity=0.852 Sum_probs=38.6
Q ss_pred ccCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHhhhccccc
Q 002748 657 QSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFD 721 (885)
Q Consensus 657 ~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~l~~~~~ 721 (885)
..+|..|...+ .++|||+.||++||..|... ..+..|||..|+.+..+..-
T Consensus 5 ~~~~~~~~t~~----~~~~~~~~~g~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~ 55 (1598)
T KOG0230|consen 5 SNVCYDCDTSV----NRRHHCRVCGRVFCSKCQDS----------PETSIRVCNECRGQWEQGNV 55 (1598)
T ss_pred ccchhcccccc----ccCCCCcccCceeccccCCC----------CccceeehhhhhhhccccCC
Confidence 34677888433 46799999999999999922 23589999999998765443
No 67
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.48 E-value=1.4 Score=40.29 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=31.8
Q ss_pred CCcEEEEEEcC---ceeEEEeCCHHHHHHHHHHHHHHH
Q 002748 87 EYQSFSLIYND---RSLDLICKDKDEAEVWFSGLKALI 121 (885)
Q Consensus 87 ~~~~FSii~~~---rtLdLva~~~~e~~~Wv~gL~~Li 121 (885)
+.++|.|+-.+ .++.|.|+|+++-+.|+..|+.+|
T Consensus 58 d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 58 EPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 47999998865 699999999999999999999887
No 68
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=91.44 E-value=0.15 Score=48.46 Aligned_cols=52 Identities=21% Similarity=0.639 Sum_probs=40.9
Q ss_pred cccCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHhhh
Q 002748 656 DQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKL 716 (885)
Q Consensus 656 d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~l 716 (885)
+...|..|..+|+.+....+.|..|...+|..|+.. ..+.+.-+|..|+...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHHHH
Confidence 456899999999977667799999999999999877 1236677999999764
No 69
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.94 E-value=1.5 Score=41.43 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=56.5
Q ss_pred HhcCCeEEEEec---CCCceeEEEEEeCCCCeEEEecCCcceeEEccccceeeccccChhhhcC---------CCCCCCC
Q 002748 21 LKKGACLLKYGR---RGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRY---------PRPEKEY 88 (885)
Q Consensus 21 L~~G~~l~K~~~---~~kp~~r~f~l~~d~~~l~W~~~~~~~~i~l~~I~eVr~G~~t~~f~~~---------~~~~~~~ 88 (885)
|..|+.+.=.++ +.|++.|.++|=++ .|+.....+++. ..+..+-.|+.. .....+.
T Consensus 6 l~Q~~f~v~~~~~~~~~K~~eR~vFLFe~--~lvfsk~~~~~~---------~~~~~~Y~yK~~ikls~l~l~e~v~gd~ 74 (114)
T cd01232 6 LLQDTFQVWDPKAGLIQKGRERRVFLFEQ--SIIFAKEVKKKK---------QFGNPKYIYKSKLQVSKMGLTEHVEGDP 74 (114)
T ss_pred EEEccEEEEeCCccccCCCceeEEEEeec--eEEEEEEeccCC---------CCCceeEEEecceeeeeeEeEEccCCCC
Confidence 455665554444 35899999999887 344433111000 001112222222 0124468
Q ss_pred cEEEEEEcC-----ceeEEEeCCHHHHHHHHHHHHHHHH
Q 002748 89 QSFSLIYND-----RSLDLICKDKDEAEVWFSGLKALIS 122 (885)
Q Consensus 89 ~~FSii~~~-----rtLdLva~~~~e~~~Wv~gL~~Li~ 122 (885)
++|.|.+++ ++.-|.|.|.++-+.|+.-|+.|+.
T Consensus 75 ~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 75 CRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred ceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 999999966 3567999999999999999999885
No 70
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.55 E-value=0.069 Score=65.48 Aligned_cols=130 Identities=18% Similarity=0.290 Sum_probs=89.8
Q ss_pred CCCEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCC--CCCCccccEEee-ccCCCcEEEEeecCcEEEEEEcCCcEEE
Q 002748 303 VLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHG--VDSDVLHPKLID-ALSNMNIELVACGEYHTCAVTLSGDLYT 379 (885)
Q Consensus 303 ~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g--~~~~~~~P~~V~-~l~~~~I~~Va~G~~hs~aLt~dG~Vy~ 379 (885)
..+++.|.+-.+..++|.+.|++|.|-+...--|-.. .......|..-. .+.+.+|+.+++..-..-++|++|+|-+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 4467777777888899999999999987654333221 122333443322 4667899999999999999999999999
Q ss_pred EcCCCCCCcccCCCCC--cceeeeeeecCCCCCceEEEEeeCCceEEEEecCCeEEEeecCCC
Q 002748 380 WGDGTYNFGLLGHGNE--VSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTF 440 (885)
Q Consensus 380 wG~n~~~~GqLG~g~~--~~~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~ 440 (885)
|=+- +|.+.. ..+..-+++ ..+++.+++.-|...|+++..++.-+|-||---+
T Consensus 453 WlDE------cgagV~fkLa~ea~Tki--eed~~maVqd~~~adhlaAf~~dniihWcGiVPf 507 (3015)
T KOG0943|consen 453 WLDE------CGAGVAFKLAHEAQTKI--EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPF 507 (3015)
T ss_pred HHhh------hhhhhhhhhhhhhhhhh--hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeee
Confidence 9543 122211 111122222 2457788888899999999999999999995433
No 71
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.12 E-value=3.9 Score=38.07 Aligned_cols=84 Identities=15% Similarity=0.310 Sum_probs=53.6
Q ss_pred ceeEEEEEeCCCCeEEEecCCc------ceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcC--ceeEEEeCCH
Q 002748 36 PKFCPFRLSNDESVLIWFSGKE------EKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND--RSLDLICKDK 107 (885)
Q Consensus 36 p~~r~f~l~~d~~~l~W~~~~~------~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~--rtLdLva~~~ 107 (885)
...|.|-+-.|.+-+++..... ...|++++.-.|+.=.++++.+ ....+-.+=|=|.|.. ++|-|.|++.
T Consensus 19 gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~--a~~kDiP~IF~I~~~~~~~~lllLA~s~ 96 (112)
T cd01242 19 GWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYR--ADAKEIPKIFQILYANEARDLLLLAPQT 96 (112)
T ss_pred CceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeee--cCcccCCeEEEEEeCCccceEEEEeCCc
Confidence 3445555555534455654221 2336665544444444444443 3334456889999976 9999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002748 108 DEAEVWFSGLKALI 121 (885)
Q Consensus 108 ~e~~~Wv~gL~~Li 121 (885)
+|.+.||..|..-|
T Consensus 97 ~ek~kWV~~L~~~~ 110 (112)
T cd01242 97 DEQNKWVSRLVKKI 110 (112)
T ss_pred hHHHHHHHHHHHhc
Confidence 99999999997655
No 72
>PLN02153 epithiospecifier protein
Probab=87.61 E-value=53 Score=36.80 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=11.7
Q ss_pred ceeeeecCCeEEEecC
Q 002748 590 HVAVLTSKTEVYTWGK 605 (885)
Q Consensus 590 Ht~aLt~~G~Vy~WG~ 605 (885)
+++.+..+++||.||-
T Consensus 307 ~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 307 TTATVYGKNGLLMHGG 322 (341)
T ss_pred cccccCCcceEEEEcC
Confidence 4556666779999984
No 73
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.27 E-value=6.2 Score=36.11 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=29.2
Q ss_pred CCCcEEEEEEcC-ceeEEEeCCHHHHHHHHHHHHH
Q 002748 86 KEYQSFSLIYND-RSLDLICKDKDEAEVWFSGLKA 119 (885)
Q Consensus 86 ~~~~~FSii~~~-rtLdLva~~~~e~~~Wv~gL~~ 119 (885)
....+|.|...+ +.+=|.|+++++++.|+..|+.
T Consensus 69 k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 69 KKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred cCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 345799998755 9999999999999999999874
No 74
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.27 E-value=1.9 Score=56.19 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=43.9
Q ss_pred CCCeEEEEecCCEE-EEEecCCeEEEEeCCCCCcCCCCCCCCCCCeeeccccCCCcEEEEEecCCceeeeecCC
Q 002748 526 EPNFCRVACGHSLT-VALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKT 598 (885)
Q Consensus 526 ~~~I~~Ia~G~~ht-~aLt~dG~Vy~wG~N~~GQLG~~~~~~~~p~~v~~~l~~~~I~~Ia~G~~Ht~aLt~~G 598 (885)
...|+.|++-..|. +|+|.+|++|..=.-..-..-.+........+|..+ .+..|..+....+|.+.+.-++
T Consensus 743 ~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP-~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 743 SGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALP-DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCC-CCCchhhhhcCCCCceEEEecC
Confidence 35899999998865 689999999974322111111110111122333322 5567899999999988876544
No 75
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=83.52 E-value=2.6 Score=47.01 Aligned_cols=108 Identities=23% Similarity=0.341 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHhcCCe--E--EEEecCCCceeEEEEEeCCCCeEEEecCCc-------------ceeEEccccceeeccc
Q 002748 11 LGCFVRAITALKKGAC--L--LKYGRRGKPKFCPFRLSNDESVLIWFSGKE-------------EKHLKLSHVSRIISGQ 73 (885)
Q Consensus 11 ~~~~~~~l~~L~~G~~--l--~K~~~~~kp~~r~f~l~~d~~~l~W~~~~~-------------~~~i~l~~I~eVr~G~ 73 (885)
+...|||+++||+-.. | +||-|.--|+++.=.+-.+ +-|..... .+.+.-..=++..+=+
T Consensus 145 ~AtHdeAVqaLKraGkeV~levKy~REvtPy~kk~sivs~---vgWe~~~p~sp~~~~~~dsp~~~~~~~~~d~k~IpLK 221 (506)
T KOG3551|consen 145 DATHDEAVQALKRAGKEVLLEVKYMREVTPYFKKESIVSE---VGWEDPAPQSPSLGGSEDSPSPKHINFRKDRKTIPLK 221 (506)
T ss_pred hcchHHHHHHHHhhCceeeeeeeeehhcchhhccCccccc---cCcCCCCccCcccCCCCCCCCCCcccccccccccchh
Confidence 5567899999987532 2 3888887788775555444 77986311 1112211001111112
Q ss_pred cChhhhcCCCCCCCCcEEEEEEcC--ceeEEEeCCHHHHHHHHHHHHHHH
Q 002748 74 RTPIFQRYPRPEKEYQSFSLIYND--RSLDLICKDKDEAEVWFSGLKALI 121 (885)
Q Consensus 74 ~t~~f~~~~~~~~~~~~FSii~~~--rtLdLva~~~~e~~~Wv~gL~~Li 121 (885)
-+-+-|+.....+|++||-|--.+ .||=|-|+|.+||+.|+.+|.+=+
T Consensus 222 m~yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v 271 (506)
T KOG3551|consen 222 MAYVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANV 271 (506)
T ss_pred hHHHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHH
Confidence 233334446678999999998855 899999999999999999985533
No 76
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=82.89 E-value=0.68 Score=53.65 Aligned_cols=83 Identities=20% Similarity=0.351 Sum_probs=61.5
Q ss_pred eeEEEEEeCCCCeEEEec-CCc----ceeEEccccceee-ccccChhhhcCCCCCCCCcEEEEEEcCceeEEEeCCHHHH
Q 002748 37 KFCPFRLSNDESVLIWFS-GKE----EKHLKLSHVSRII-SGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEA 110 (885)
Q Consensus 37 ~~r~f~l~~d~~~l~W~~-~~~----~~~i~l~~I~eVr-~G~~t~~f~~~~~~~~~~~~FSii~~~rtLdLva~~~~e~ 110 (885)
+.|+|.|+.- .|.+.. +.+ .-.|+|+.|+.|+ .|++- .. -.-...|-|+..++|+=|-|+|+.-|
T Consensus 755 ~TrYFTLSgA--~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr-----~~--rslpKAFEIFTAD~T~ILKaKDeKNA 825 (851)
T KOG3723|consen 755 KTRYFTLSGA--QLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKR-----RD--RSLPKAFEIFTADKTYILKAKDEKNA 825 (851)
T ss_pred ccceEEecch--hhhcccCCCCCCCCCCCccHHHhhhHHHHHhhh-----hh--cccchhhheeecCceEEeecccccCH
Confidence 5678888865 555533 222 2349999999999 66411 11 11235788999999999999999999
Q ss_pred HHHHHHHHHHHHcccccc
Q 002748 111 EVWFSGLKALISRSHHRK 128 (885)
Q Consensus 111 ~~Wv~gL~~Li~~~~~~~ 128 (885)
+.|+..|+-.|+++|++.
T Consensus 826 EEWlqCL~IavAHa~~r~ 843 (851)
T KOG3723|consen 826 EEWLQCLNIAVAHAKERE 843 (851)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998754
No 77
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=82.59 E-value=0.16 Score=62.53 Aligned_cols=128 Identities=19% Similarity=0.194 Sum_probs=84.0
Q ss_pred CCcEEEEeecCcEEEEEEcCCcEEEEcCCCCCCcccCC--CCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCeE
Q 002748 355 NMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGH--GNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQL 432 (885)
Q Consensus 355 ~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~--g~~~~~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~V 432 (885)
..+++.|.+-.+..++|..+|++|.|-+... -.+.. ....+..-|..-...+.+.+|+.+++..--.-++|++|+|
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdES--Eglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghl 450 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDES--EGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHL 450 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccc--cCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCch
Confidence 4578888888888999999999999987632 22221 1111222343333346788999999999999999999999
Q ss_pred EEeecCCCcccCCCCCcccc--cceeeeccCCCeEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeC
Q 002748 433 FTFGDGTFGVLGHGDRKSVS--IPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGD 501 (885)
Q Consensus 433 y~wG~n~~GQLG~g~~~~~~--~P~~V~~l~~~~I~~VacG~~ht~alte~~~~~s~~~~~~~G~vy~WG~ 501 (885)
.+|=+ .+|.+...... .-+.+ .+.+..+++..|...|+++..+ +..+|=||-
T Consensus 451 asWlD----EcgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~------------dniihWcGi 504 (3015)
T KOG0943|consen 451 ASWLD----ECGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLE------------DNIIHWCGI 504 (3015)
T ss_pred hhHHh----hhhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhh------------hceeeEEee
Confidence 99953 23333221111 11111 2345556667777888888774 888999984
No 78
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=82.53 E-value=2.5 Score=39.09 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=61.8
Q ss_pred eeEEEEEeCCCCeEEEecC---CcceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcC-ceeEEEeCCHHHHHH
Q 002748 37 KFCPFRLSNDESVLIWFSG---KEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDEAEV 112 (885)
Q Consensus 37 ~~r~f~l~~d~~~l~W~~~---~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~-rtLdLva~~~~e~~~ 112 (885)
..|+|+|=|. +|-|+.. ++..-|.+++|.+|..-.. . .+.+.|..|..++ +-+=|.|.|+-++..
T Consensus 21 Q~Ry~~LfPN--RLE~~~~~~~~~~eLi~M~~i~~V~~e~~-----~----iK~~~CI~ik~k~~~k~vlt~~d~i~l~q 89 (116)
T cd01240 21 QTRYFKLYPN--RLELYGESEANKPELITMDQIEDVSVEFQ-----Q----IKEENCILLKIRDEKKIVLTNSDEIELKQ 89 (116)
T ss_pred HHHHheeCcc--eeeecccccccCCcEEEeehhhhcchhhe-----e----eccCceEEEEEcCCceEEEecCCcHHHHH
Confidence 4678999886 8999863 2344488899999875532 2 4678999999976 779999999999999
Q ss_pred HHHHHHHHHHcccc
Q 002748 113 WFSGLKALISRSHH 126 (885)
Q Consensus 113 Wv~gL~~Li~~~~~ 126 (885)
|..-|+......|.
T Consensus 90 W~~elr~a~r~Sq~ 103 (116)
T cd01240 90 WKKELRDAHRESQQ 103 (116)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999877766664
No 79
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.98 E-value=13 Score=34.47 Aligned_cols=72 Identities=17% Similarity=0.285 Sum_probs=42.9
Q ss_pred ceeEEEEEeCCCCeEEEecCCc----ceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEE--cC----ceeEEEeC
Q 002748 36 PKFCPFRLSNDESVLIWFSGKE----EKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIY--ND----RSLDLICK 105 (885)
Q Consensus 36 p~~r~f~l~~d~~~l~W~~~~~----~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~--~~----rtLdLva~ 105 (885)
-|+|+|.|. | ..|.++..++ +..+.|.-..-++. .+.-.+...|+|.. .. ++.-|-|+
T Consensus 20 ~KrrwF~lk-~-~~L~YyK~kee~~~~p~i~lnl~gcev~----------~dv~~~~~kf~I~l~~ps~~~~r~y~l~cd 87 (106)
T cd01237 20 YKQYWFTFR-D-TSISYYKSKEDSNGAPIGQLNLKGCEVT----------PDVNVAQQKFHIKLLIPTAEGMNEVWLRCD 87 (106)
T ss_pred heeEEEEEe-C-CEEEEEccchhcCCCCeEEEecCceEEc----------ccccccccceEEEEecCCccCCeEEEEECC
Confidence 467778887 5 6787776443 33344432211111 11111233455554 22 89999999
Q ss_pred CHHHHHHHHHHHHH
Q 002748 106 DKDEAEVWFSGLKA 119 (885)
Q Consensus 106 ~~~e~~~Wv~gL~~ 119 (885)
|++|++.|+.+++.
T Consensus 88 sEeqya~Wmaa~rl 101 (106)
T cd01237 88 NEKQYAKWMAACRL 101 (106)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999874
No 80
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=81.92 E-value=53 Score=38.99 Aligned_cols=108 Identities=27% Similarity=0.291 Sum_probs=68.3
Q ss_pred ecCcEEEEEEcCCcEEEEcCCCCCCcccCCCCCcceeeeeeecCCCCCceEEEEeeCC-ceEEEEecCCeEE-EeecCCC
Q 002748 363 CGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGP-WHTAVVTSAGQLF-TFGDGTF 440 (885)
Q Consensus 363 ~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~IacG~-~ht~aLt~~G~Vy-~wG~n~~ 440 (885)
.|.....||..+|++|.= -|.......-..-++..+. ..+.+|++|. ....+|+.+|.|| -.|-..+
T Consensus 190 ~g~~~awAI~s~Gd~y~R---------tGvs~~~P~GraW~~i~~~--t~L~qISagPtg~VwAvt~nG~vf~R~GVsRq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR---------TGVSVDRPCGRAWKVICPY--TDLSQISAGPTGVVWAVTENGAVFYREGVSRQ 258 (705)
T ss_pred CCceEEEEEecCCcEEEe---------ccccCCCCCCceeeecCCC--CccceEeecCcceEEEEeeCCcEEEEeccccc
Confidence 667778899999999852 1111111111111111111 1588999999 7888999999875 5676666
Q ss_pred cccCCCCCcccccceeeeccCCCeEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEE
Q 002748 441 GVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTW 499 (885)
Q Consensus 441 GQLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~alte~~~~~s~~~~~~~G~vy~W 499 (885)
.+.|..= ..+.+|+... .++.|+-|....-+|+ ++|.||.=
T Consensus 259 Np~GdsW-kdI~tP~~a~-----~~v~iSvGt~t~Wald------------ndg~lwfr 299 (705)
T KOG3669|consen 259 NPEGDSW-KDIVTPRQAL-----EPVCISVGTQTLWALD------------NDGNLWFR 299 (705)
T ss_pred CCCCchh-hhccCccccc-----ceEEEEeccceEEEEe------------cCCcEEEE
Confidence 6665431 2444444432 2889999988888887 68988763
No 81
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=81.16 E-value=13 Score=43.69 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=66.2
Q ss_pred ecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcc-ccEEeeccCCCcEEEEeecC-cEEEEEEcCCcEE-EEcCCCCCC
Q 002748 311 CGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVL-HPKLIDALSNMNIELVACGE-YHTCAVTLSGDLY-TWGDGTYNF 387 (885)
Q Consensus 311 ~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~-~P~~V~~l~~~~I~~Va~G~-~hs~aLt~dG~Vy-~wG~n~~~~ 387 (885)
.|...+.+|+.+|++|. +-|.....+.- .-+.+.. ...+.+|++|. ....+|+.+|.|| --|-. .+
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~--~t~L~qISagPtg~VwAvt~nG~vf~R~GVs--Rq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICP--YTDLSQISAGPTGVVWAVTENGAVFYREGVS--RQ 258 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCC--CCccceEeecCcceEEEEeeCCcEEEEeccc--cc
Confidence 45566778888888875 11222221111 1111111 12588999998 7778999999975 45655 34
Q ss_pred cccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCeEEEe
Q 002748 388 GLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTF 435 (885)
Q Consensus 388 GqLG~g~~~~~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~w 435 (885)
.+.|..=. ....|+. -..++.|+.|....-+||.+|.||.=
T Consensus 259 Np~GdsWk-dI~tP~~------a~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 259 NPEGDSWK-DIVTPRQ------ALEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCCCchhh-hccCccc------ccceEEEEeccceEEEEecCCcEEEE
Confidence 55554322 2223332 22499999999999999999999853
No 82
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=80.81 E-value=4.6 Score=47.70 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=59.3
Q ss_pred CeEEEEecCCCceeEEEEEeCCCCeEEEec-------CCcceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcC
Q 002748 25 ACLLKYGRRGKPKFCPFRLSNDESVLIWFS-------GKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYND 97 (885)
Q Consensus 25 ~~l~K~~~~~kp~~r~f~l~~d~~~l~W~~-------~~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~ 97 (885)
..+.|+....+-+.|+|.+..+ .+.|.. ....+.+.+.+|..|.+- ... ...+...||.|-...
T Consensus 381 G~l~k~~~~~~wk~ry~~l~~~--~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv-----~~~--~~~~~~~~~~i~~~~ 451 (478)
T PTZ00267 381 GYLYKYSSDMRWKKRYFYIGNG--QLRISLSENPENDGVAPKSVNLETVNDVFPV-----PEV--YSQKHPNQLVLWFNN 451 (478)
T ss_pred eEEeccCCCcchhhheEEecCC--ceEEEeccccccCCCCCccccHHHhcccccc-----cHH--hcCCCCceEEEEecC
Confidence 4567877666678888998765 454432 122355666666665322 111 112357889997755
Q ss_pred -ceeEEEeCCHHHHHHHHHHHHHHH
Q 002748 98 -RSLDLICKDKDEAEVWFSGLKALI 121 (885)
Q Consensus 98 -rtLdLva~~~~e~~~Wv~gL~~Li 121 (885)
+.+=++|++++|++.|+..|+..+
T Consensus 452 ~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 452 GQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred CcEEEEecCChHHHHHHHHHHHHHh
Confidence 888999999999999999998765
No 83
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=80.49 E-value=88 Score=33.60 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=38.1
Q ss_pred ecCCEEEEEecCCeEEEEeCCCCCcCCCCCCCCCCCeeeccccCCCcEEEEEecCCce--eeeecCCeEEEecC
Q 002748 534 CGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIACGSYHV--AVLTSKTEVYTWGK 605 (885)
Q Consensus 534 ~G~~ht~aLt~dG~Vy~wG~N~~GQLG~~~~~~~~p~~v~~~l~~~~I~~Ia~G~~Ht--~aLt~~G~Vy~WG~ 605 (885)
-...+-+.-+.+|.|++|--..+- -....+|. .+..|..++.+...+ ++.++.|..|+|-.
T Consensus 134 pnQteLis~dqsg~irvWDl~~~~-----c~~~liPe------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 134 PNQTELISGDQSGNIRVWDLGENS-----CTHELIPE------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred CCcceEEeecCCCcEEEEEccCCc-----cccccCCC------CCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 345566777889999999632210 01111221 235578888876664 66789999999954
No 84
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=79.86 E-value=7.7 Score=35.18 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=52.1
Q ss_pred HhcCCeEEEEecCCCceeEEEEEeCCCCeEEEec------CCcce-----eEEccccceeeccccChhhhcCCCCCCCCc
Q 002748 21 LKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFS------GKEEK-----HLKLSHVSRIISGQRTPIFQRYPRPEKEYQ 89 (885)
Q Consensus 21 L~~G~~l~K~~~~~kp~~r~f~l~~d~~~l~W~~------~~~~~-----~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~ 89 (885)
|.+-..|+|+. +|+||.|.|+|=.| .|+.-. .+..+ .|+|.+|.=.-. .|+-...
T Consensus 3 Lv~eg~lvel~-~~~rK~R~~FLFnD--lLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----~~~~~~~------ 68 (96)
T cd01228 3 LVKDSFLVELV-EGSRKLRHLFLFTD--VLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----PFRIHNK------ 68 (96)
T ss_pred ccccceeeeeh-hCCCcceEEEeecc--EEEEEEeeeccCccccccceeEEEEhHHheecch-----hhhcccc------
Confidence 34445788998 45889999999998 344433 11122 478877632111 1222210
Q ss_pred EEEEEEcCceeEEEeCCHHHHHHHHHHHHHHH
Q 002748 90 SFSLIYNDRSLDLICKDKDEAEVWFSGLKALI 121 (885)
Q Consensus 90 ~FSii~~~rtLdLva~~~~e~~~Wv~gL~~Li 121 (885)
..||.-+.|.+..|...|+..|+.|.
T Consensus 69 ------~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 69 ------NGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred ------CCceEEEEecCHHHHHHHHHHHHHHh
Confidence 12777888999999999999988764
No 85
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=77.61 E-value=1.6 Score=53.56 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=60.0
Q ss_pred eeEEEEEeCCCCeEEEec----CCcceeEEccccceeeccc-cChhhhcCCCCCCCCcEEEEEEcCceeEEEeCCHHHHH
Q 002748 37 KFCPFRLSNDESVLIWFS----GKEEKHLKLSHVSRIISGQ-RTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAE 111 (885)
Q Consensus 37 ~~r~f~l~~d~~~l~W~~----~~~~~~i~l~~I~eVr~G~-~t~~f~~~~~~~~~~~~FSii~~~rtLdLva~~~~e~~ 111 (885)
+.|+|.|++|..+|.+|. .+.+..|+|.||+.|-.+. ++ ..+.--|-+-...|+-.|.|.+..+|.
T Consensus 1651 k~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~---------vdekgffdlktt~rvynf~a~nin~Aq 1721 (1732)
T KOG1090|consen 1651 KPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKT---------VDEKGFFDLKTTNRVYNFCAQNINLAQ 1721 (1732)
T ss_pred ccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccc---------cCccceeeeehhhHHHHHHhccchHHH
Confidence 779999999999999998 3568889999999888732 22 223334445456689999999999999
Q ss_pred HHHHHHHHHH
Q 002748 112 VWFSGLKALI 121 (885)
Q Consensus 112 ~Wv~gL~~Li 121 (885)
.|+..|+..+
T Consensus 1722 qWve~iqscl 1731 (1732)
T KOG1090|consen 1722 QWVECIQSCL 1731 (1732)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 86
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=75.78 E-value=23 Score=33.51 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=56.0
Q ss_pred HhcCCeEEEEecCCCceeEEEEEeCCCCeEEEecCCcc----eeEEccccceeeccccChhhhcCCC--CCCCCcEEEEE
Q 002748 21 LKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEE----KHLKLSHVSRIISGQRTPIFQRYPR--PEKEYQSFSLI 94 (885)
Q Consensus 21 L~~G~~l~K~~~~~kp~~r~f~l~~d~~~l~W~~~~~~----~~i~l~~I~eVr~G~~t~~f~~~~~--~~~~~~~FSii 94 (885)
+..|..=+|---+++|+.|+.+|=+- .|+-+..+.. ....+.+...++.=+-+..-.+... ...-..+|-|+
T Consensus 5 ~~DGelk~k~~~~~k~k~RyiFLFDk--~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~ 82 (116)
T cd01223 5 LLDGEVRIKASEDQKTKLRYIFLFDK--AVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLA 82 (116)
T ss_pred ccCCceEEeEeccCCCceeEEEEecc--eEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEE
Confidence 34565434444457899999888654 4544432211 1233333221111110100000010 11224588899
Q ss_pred EcC--ceeEEEeCCHHHHHHHHHHHHHHHHc
Q 002748 95 YND--RSLDLICKDKDEAEVWFSGLKALISR 123 (885)
Q Consensus 95 ~~~--rtLdLva~~~~e~~~Wv~gL~~Li~~ 123 (885)
..+ ..+.|.|+++|+.+.|...|..-++.
T Consensus 83 ~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 83 HKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred ecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 966 67999999999999999999877764
No 87
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.04 E-value=3.3 Score=32.31 Aligned_cols=25 Identities=44% Similarity=0.454 Sum_probs=22.4
Q ss_pred chhhHHhhHHHHHHHHHHHHhhhhc
Q 002748 860 VDDAKRTNDSLSQEVIKLRAQVFAF 884 (885)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (885)
-|.|+.-++.|.+|..+|++||..|
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999865
No 88
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=73.43 E-value=28 Score=33.77 Aligned_cols=41 Identities=12% Similarity=0.346 Sum_probs=35.3
Q ss_pred CCCCcEEEEEEcC--ceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 002748 85 EKEYQSFSLIYND--RSLDLICKDKDEAEVWFSGLKALISRSH 125 (885)
Q Consensus 85 ~~~~~~FSii~~~--rtLdLva~~~~e~~~Wv~gL~~Li~~~~ 125 (885)
..+.+.|.|-+.+ .+..|.|.|++.-+.|+.-|+.|+..-.
T Consensus 77 ~gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q~ 119 (133)
T cd01227 77 KGDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQL 119 (133)
T ss_pred CCCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 3457899998866 7789999999999999999999997654
No 89
>PHA03098 kelch-like protein; Provisional
Probab=73.26 E-value=1.4e+02 Score=35.77 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=11.8
Q ss_pred cEEEEEEcCCcEEEEcCC
Q 002748 366 YHTCAVTLSGDLYTWGDG 383 (885)
Q Consensus 366 ~hs~aLt~dG~Vy~wG~n 383 (885)
.|++++ -+|+||.+|..
T Consensus 335 ~~~~~~-~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGGI 351 (534)
T ss_pred cceEEE-ECCEEEEEeCC
Confidence 455444 47999999965
No 90
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.59 E-value=42 Score=31.64 Aligned_cols=86 Identities=13% Similarity=0.253 Sum_probs=52.6
Q ss_pred eEEEEecCCC-ceeEEEEEeCCCCeEEEec----CCcceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcCcee
Q 002748 26 CLLKYGRRGK-PKFCPFRLSNDESVLIWFS----GKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSL 100 (885)
Q Consensus 26 ~l~K~~~~~k-p~~r~f~l~~d~~~l~W~~----~~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~rtL 100 (885)
+|+-|..+-+ .|+++++||.. .|.-+. .+--|.|+|+||..|..-... . .......+||-|+....+-
T Consensus 5 WmVHyT~~d~~rKRhYWrLDsK--~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~---~--~~~~~~~hcFEi~T~~~vY 77 (117)
T cd01239 5 WMVHYTSSDNRRKKHYWRLDSK--AITLYQEESGSRYYKEIPLAEILSVSSNNGD---S--VLAKHPPHCFEIRTTTNVY 77 (117)
T ss_pred eEEEEecCccceeeeEEEecCC--eEEEEEcCCCCeeeEEeehHHheEEeccCCC---c--CCCCCCCcEEEEEecCEEE
Confidence 5667766544 34555666664 565443 345778999999999852221 1 2235678999999854221
Q ss_pred EE--------------------EeCCHHHHHHHHHHHH
Q 002748 101 DL--------------------ICKDKDEAEVWFSGLK 118 (885)
Q Consensus 101 dL--------------------va~~~~e~~~Wv~gL~ 118 (885)
=+ -....+.|..|.++|+
T Consensus 78 ~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~ 115 (117)
T cd01239 78 FVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIR 115 (117)
T ss_pred EecccccccCCCcccCCCCcccccchhHHHHHHHHHHh
Confidence 11 1123456788998876
No 91
>PHA02713 hypothetical protein; Provisional
Probab=71.98 E-value=88 Score=37.86 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=13.5
Q ss_pred cCcEEEEEEcCCcEEEEcCC
Q 002748 364 GEYHTCAVTLSGDLYTWGDG 383 (885)
Q Consensus 364 G~~hs~aLt~dG~Vy~wG~n 383 (885)
...+..+..-+|+||.+|..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 33344455568999999965
No 92
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=71.91 E-value=6.3 Score=46.33 Aligned_cols=111 Identities=17% Similarity=0.260 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCeEEEEec-CCCceeEEEEEeCCCCeEEEecCCcceeEEccccceeeccccChhhhcC-CCCCCCCc
Q 002748 12 GCFVRAITALKKGACLLKYGR-RGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRY-PRPEKEYQ 89 (885)
Q Consensus 12 ~~~~~~l~~L~~G~~l~K~~~-~~kp~~r~f~l~~d~~~l~W~~~~~~~~i~l~~I~eVr~G~~t~~f~~~-~~~~~~~~ 89 (885)
..|+-.-..||+|. ++|+.. +|.+..|++.|=.| .+.+...+. .+. -..-++|.--........ ...+.-.+
T Consensus 264 dIV~PsreLiKEG~-l~Kis~k~~~~qeRylfLFNd--~~lyc~~r~--~~~-~~k~~~r~~~s~~~~~v~~~~~~~~~~ 337 (623)
T KOG4424|consen 264 DIVSPSRELIKEGQ-LQKISAKNGTTQERYLFLFND--ILLYCKPRK--RLP-GSKYEVRARCSISHMQVQEDDNEELPH 337 (623)
T ss_pred cccCcHHHHhhccc-eeeeeccCCCcceeEEEEehh--HHHhhhhhh--hcc-cceeccceeeccCcchhcccccccCCc
Confidence 33444556677775 567744 59999999999887 344543221 111 111222222222222221 12233467
Q ss_pred EEEEEEcCceeEEEeCCHHHHHHHHHHHHHHHHcccccc
Q 002748 90 SFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRK 128 (885)
Q Consensus 90 ~FSii~~~rtLdLva~~~~e~~~Wv~gL~~Li~~~~~~~ 128 (885)
.|-+-.++++|+|.|.++++-+.||..|+..|..++..+
T Consensus 338 tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~~ 376 (623)
T KOG4424|consen 338 TFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQCR 376 (623)
T ss_pred eEEEecccceEEeecCchhhHHHHHHHHHHHHHHHHHHH
Confidence 776666679999999999999999999999998876543
No 93
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=71.87 E-value=24 Score=33.85 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=48.8
Q ss_pred ecCCCceeEEEEEeCCCCeEEEecCCcceeEEc-----cccceeeccccChhhhcC--CCCCCCCcEEEEEEc----C--
Q 002748 31 GRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKL-----SHVSRIISGQRTPIFQRY--PRPEKEYQSFSLIYN----D-- 97 (885)
Q Consensus 31 ~~~~kp~~r~f~l~~d~~~l~W~~~~~~~~i~l-----~~I~eVr~G~~t~~f~~~--~~~~~~~~~FSii~~----~-- 97 (885)
+++-..+.+++.|=.| .|.....|.+.++.+ .+-.+|..+..... .-- .........|.|..- +
T Consensus 22 ~~k~~~~~vylfLFnD--lLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~-~~~~~~~~~~~~~~F~ltLl~N~~gk~ 98 (125)
T cd01221 22 RKKLKARTIYLFLFND--LLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQ-KIPLGSNLVGRPNLFLLTLLRNADDKQ 98 (125)
T ss_pred cccccCCcEEEEEecc--eEEEEEecCCCeEEEEeeccccceEEeecccccc-cccccccccCCCceEEEEeeccCCCCE
Confidence 3344456688888887 566655444444444 22223332221100 000 111234678998861 1
Q ss_pred ceeEEEeCCHHHHHHHHHHHH
Q 002748 98 RSLDLICKDKDEAEVWFSGLK 118 (885)
Q Consensus 98 rtLdLva~~~~e~~~Wv~gL~ 118 (885)
+.|-|.|+++.|...|+.+|.
T Consensus 99 ~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 99 AELLLSADSQSDRERWLSALA 119 (125)
T ss_pred EEEEEECCCHHHHHHHHHhcC
Confidence 779999999999999999874
No 94
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=71.17 E-value=1.2e+02 Score=32.82 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=16.2
Q ss_pred CcEEEEEEcCCcEEEEcCCCCCCccc
Q 002748 365 EYHTCAVTLSGDLYTWGDGTYNFGLL 390 (885)
Q Consensus 365 ~~hs~aLt~dG~Vy~wG~n~~~~GqL 390 (885)
..|++++- ++++|.||......|.+
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaC 104 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGAC 104 (392)
T ss_pred cCceEEEE-cceEEEEcCccCccccc
Confidence 46776665 67899998653334444
No 95
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=71.07 E-value=2.3 Score=54.83 Aligned_cols=58 Identities=28% Similarity=0.671 Sum_probs=37.3
Q ss_pred cccccccCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHhhhccccc
Q 002748 652 VSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFD 721 (885)
Q Consensus 652 vs~~d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~l~~~~~ 721 (885)
+++...--|..|++.|..|.| +||| ||.+||.+| .......-+.+. +.|+........
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr-~~~~--~gqi~~ss~----~~~~~~~~~~e~-----d~c~~~~~~~~~ 149 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRR-KHHC--CGQIFCSSC----IDGMSIRCDGEL-----DYCSRYVEDFAK 149 (1598)
T ss_pred CCccccchhhhhccchhhhhc-cccc--CccccCCcc----cCCccccccccc-----chhHHHhhhhhc
Confidence 344445569999999996655 5999 999999999 222222222111 778776655444
No 96
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.65 E-value=36 Score=36.98 Aligned_cols=137 Identities=20% Similarity=0.167 Sum_probs=78.8
Q ss_pred cceecCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceeecccCCCCEEEEEecC---CeEEEEEcCCcEEEEe
Q 002748 253 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGG---RHAALVNKQGEVFSWG 329 (885)
Q Consensus 253 ~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~---~hs~~Lt~dG~Vy~wG 329 (885)
+..+...+|.||.=+... |.+|+=+-. .-.++.+..|. -|.+++..||..|.+-
T Consensus 65 ~dvapapdG~VWft~qg~--gaiGhLdP~---------------------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGT--GAIGHLDPA---------------------TGEVETYPLGSGASPHGIVVGPDGSAWITD 121 (353)
T ss_pred cccccCCCCceEEecCcc--ccceecCCC---------------------CCceEEEecCCCCCCceEEECCCCCeeEec
Confidence 336778999999777655 666654311 11355555553 4889999999999875
Q ss_pred CC-CCCCcCCCCCCCccccEEeeccCCCcEEEEeecCcEEEEEEcCCcEEEEcCCCCCCcccCCCCCcceeeeeeecCCC
Q 002748 330 EE-SGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPL 408 (885)
Q Consensus 330 ~N-~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l 408 (885)
.. .-++++.........|.. .+.+-++-.+.+++..|.||.-|.+.+ +|.|.-........|.. .
T Consensus 122 ~~~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~-yGrLdPa~~~i~vfpaP-q--- 187 (353)
T COG4257 122 TGLAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGA-YGRLDPARNVISVFPAP-Q--- 187 (353)
T ss_pred CcceeEEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeecccc-ceecCcccCceeeeccC-C---
Confidence 43 233333221111111111 234445667889999999999998732 34333222222222221 1
Q ss_pred CCceEEEEeeCCceEEEEecCCeEEEe
Q 002748 409 EGIHVSSISCGPWHTAVVTSAGQLFTF 435 (885)
Q Consensus 409 ~~~~Iv~IacG~~ht~aLt~~G~Vy~w 435 (885)
-+.-.-++.|-+|+||.-
T Consensus 188 ---------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 188 ---------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred ---------CCCCcceEECCCCcEEEE
Confidence 133456788999999876
No 97
>PHA03098 kelch-like protein; Provisional
Probab=70.17 E-value=2.3e+02 Score=33.79 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=11.2
Q ss_pred ceEEEEecCCeEEEeec
Q 002748 421 WHTAVVTSAGQLFTFGD 437 (885)
Q Consensus 421 ~ht~aLt~~G~Vy~wG~ 437 (885)
.|+++. -+|+||.+|-
T Consensus 335 ~~~~~~-~~~~lyv~GG 350 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGG 350 (534)
T ss_pred cceEEE-ECCEEEEEeC
Confidence 455444 4789999994
No 98
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=68.63 E-value=3 Score=46.16 Aligned_cols=75 Identities=20% Similarity=0.373 Sum_probs=46.0
Q ss_pred EcCCCccceeeeecccccccccCccccccCCCcccccccccccccceeeccCCCccccccccCCC-CCCCcccchhhHhh
Q 002748 637 ACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPN-PNKPYRVCDNCFNK 715 (885)
Q Consensus 637 acG~~hT~al~~~kwvs~~d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~-~~~~~RVC~~C~~~ 715 (885)
.||+...+.+....-..+...-.|+.|+..+. | .|..|.+||. +.+.....+... .....-+|+.|...
T Consensus 192 vCGs~P~~s~v~~~~~~G~RyL~CslC~teW~-~--~R~~C~~Cg~-------~~~l~y~~~~~~~~~~r~e~C~~C~~Y 261 (309)
T PRK03564 192 VCGSMPVSSVVQIGTTQGLRYLHCNLCESEWH-V--VRVKCSNCEQ-------SGKLHYWSLDSEQAAVKAESCGDCGTY 261 (309)
T ss_pred CCCCcchhheeeccCCCCceEEEcCCCCCccc-c--cCccCCCCCC-------CCceeeeeecCCCcceEeeeccccccc
Confidence 47877766643221123445567999999866 4 3688999985 234333333322 11234599999999
Q ss_pred hccccc
Q 002748 716 LRKTFD 721 (885)
Q Consensus 716 l~~~~~ 721 (885)
++....
T Consensus 262 lK~~~~ 267 (309)
T PRK03564 262 LKILYQ 267 (309)
T ss_pred ceeccc
Confidence 977643
No 99
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=68.51 E-value=2.8 Score=46.39 Aligned_cols=75 Identities=24% Similarity=0.485 Sum_probs=45.6
Q ss_pred EcCCCccceeeeec-ccccccccCccccccCCCcccccccccccccceeeccCCCccccccccCCC-CCCCcc--cchhh
Q 002748 637 ACGTNFTAAICLHK-WVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPN-PNKPYR--VCDNC 712 (885)
Q Consensus 637 acG~~hT~al~~~k-wvs~~d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~-~~~~~R--VC~~C 712 (885)
.||+...+.+.... -..+...-.|+.|...+. |. |..|.+||. +++.....+..+ ....+| +|+.|
T Consensus 189 vCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~-~~--R~~C~~Cg~-------~~~l~y~~~e~~~~~~~~r~e~C~~C 258 (305)
T TIGR01562 189 ACGSPPVASMVRQGGKETGLRYLSCSLCATEWH-YV--RVKCSHCEE-------SKHLAYLSLEHDAEKAVLKAETCDSC 258 (305)
T ss_pred CCCChhhhhhhcccCCCCCceEEEcCCCCCccc-cc--CccCCCCCC-------CCceeeEeecCCCCCcceEEeecccc
Confidence 47777665543221 123445567999999866 43 688999985 234333433321 123456 99999
Q ss_pred Hhhhccccc
Q 002748 713 FNKLRKTFD 721 (885)
Q Consensus 713 ~~~l~~~~~ 721 (885)
...++....
T Consensus 259 ~~YlK~~~~ 267 (305)
T TIGR01562 259 QGYLKILYQ 267 (305)
T ss_pred ccchhhhcc
Confidence 999877643
No 100
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=68.41 E-value=69 Score=39.96 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=42.4
Q ss_pred cCcEEEEEEcCCc-EEEEcCCCCCCcccCCCCCcc-eeeeeeecCCCCCceEEEEeeCCceEEEEecCCe--EEEeecCC
Q 002748 364 GEYHTCAVTLSGD-LYTWGDGTYNFGLLGHGNEVS-HWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQ--LFTFGDGT 439 (885)
Q Consensus 364 G~~hs~aLt~dG~-Vy~wG~n~~~~GqLG~g~~~~-~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~--Vy~wG~n~ 439 (885)
+....++++.+|+ |+++|.+ |-.-.-.... ...|..+.. .+..|..|+|-..|.+.-++++. +|.++...
T Consensus 14 ~G~t~i~~d~~gefi~tcgsd----g~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSD----GDIRKWKTNSDEEEPETIDI--SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred CceEEEEEcCCCCEEEEecCC----CceEEeecCCcccCCchhhc--cCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 3345556666665 5566655 1111111111 144555542 46789999999999999999985 47776654
Q ss_pred C
Q 002748 440 F 440 (885)
Q Consensus 440 ~ 440 (885)
.
T Consensus 88 ~ 88 (933)
T KOG1274|consen 88 E 88 (933)
T ss_pred c
Confidence 4
No 101
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=67.02 E-value=1.8 Score=47.38 Aligned_cols=65 Identities=23% Similarity=0.521 Sum_probs=50.9
Q ss_pred cccccccccCccccccCCCcccccccccccccceeeccCCC----ccccccccCCCCCCCcccchhhHhh
Q 002748 650 KWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSS----KKSLKASMAPNPNKPYRVCDNCFNK 715 (885)
Q Consensus 650 kwvs~~d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css----~~~~~~~~~~~~~~~~RVC~~C~~~ 715 (885)
.|+.+.+...|..|..+|. |.+++|+|+.||+++|..|.. ++.+.+...+-.+.....|..|+..
T Consensus 13 ~~~~~~e~~s~~~~~~e~~-~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 13 DWQANSEANSCRNCKVEFC-FGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHhccchhhhhhcccch-hhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 5888888999999999998 777789999999999999976 2223343333345677889999888
No 102
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=66.65 E-value=36 Score=31.98 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=52.3
Q ss_pred cCCeEEEE-ecCCCceeEEEEEeCCCCeEEEecCCccee-------EEccccceeeccccChhhhcCCCCCCCCcEEEEE
Q 002748 23 KGACLLKY-GRRGKPKFCPFRLSNDESVLIWFSGKEEKH-------LKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLI 94 (885)
Q Consensus 23 ~G~~l~K~-~~~~kp~~r~f~l~~d~~~l~W~~~~~~~~-------i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii 94 (885)
+|-.-+|- ++++| |.++|.|-.. -|-+.+..+.+. ..+++. .|=.|.. ++ ..-..+-+.||.|=
T Consensus 3 ~g~LylK~~gkKsW-Kk~~f~LR~S--GLYy~~Kgksk~srdL~cl~~f~~~-nvY~~~~---~k-Kk~kAPTd~~F~~K 74 (114)
T cd01259 3 EGPLYLKADGKKSW-KKYYFVLRSS--GLYYFPKEKTKNTRDLACLNLLHGH-NVYTGLG---WR-KKYKSPTDYCFGFK 74 (114)
T ss_pred cceEEEccCCCccc-eEEEEEEeCC--eeEEccCCCcCCHHHHHHHHhcccC-cEEEEec---hh-hccCCCCCceEEEe
Confidence 46666775 77777 6677888775 354444221111 222222 2333332 11 12335667888885
Q ss_pred EcC------cee-EEEeCCHHHHHHHHHHHHHHH
Q 002748 95 YND------RSL-DLICKDKDEAEVWFSGLKALI 121 (885)
Q Consensus 95 ~~~------rtL-dLva~~~~e~~~Wv~gL~~Li 121 (885)
... +.| -|-|+|++.++.|+++||-+-
T Consensus 75 ~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 75 AVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred ccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 522 333 377888999999999998654
No 103
>PF15406 PH_6: Pleckstrin homology domain
Probab=65.56 E-value=16 Score=33.98 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=39.7
Q ss_pred cceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcCceeEEEeCCHHHHHHHHHHHHH
Q 002748 57 EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKA 119 (885)
Q Consensus 57 ~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~rtLdLva~~~~e~~~Wv~gL~~ 119 (885)
+..-|.|.|+.+|...-.. -|++-.+++..-+.|.+.+|++.||..|+.
T Consensus 63 P~GiinLadase~~~~g~~--------------kF~f~~~G~khtF~A~s~aERD~Wv~~lk~ 111 (112)
T PF15406_consen 63 PSGIINLADASEPEKDGSN--------------KFHFKIKGHKHTFEAASAAERDNWVAQLKA 111 (112)
T ss_pred CcceEehhhccccccCCCc--------------eEEEEeCCceeeeecCCHHHhccHHHHhhc
Confidence 4556999999988765544 477777888899999999999999998863
No 104
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=65.07 E-value=56 Score=30.97 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=33.0
Q ss_pred CCCCcEEEEEEcC-ceeEEEeCCHHHHHHHHHHHHHHHHc
Q 002748 85 EKEYQSFSLIYND-RSLDLICKDKDEAEVWFSGLKALISR 123 (885)
Q Consensus 85 ~~~~~~FSii~~~-rtLdLva~~~~e~~~Wv~gL~~Li~~ 123 (885)
.+-..-|.|...+ +..=|.|.|.+|++.|+..|+...+.
T Consensus 74 ~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 74 SKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred cCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4456778888866 89999999999999999999987654
No 105
>PLN02153 epithiospecifier protein
Probab=63.43 E-value=2.5e+02 Score=31.35 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=12.4
Q ss_pred cEEEEEEcCCcEEEEcCC
Q 002748 366 YHTCAVTLSGDLYTWGDG 383 (885)
Q Consensus 366 ~hs~aLt~dG~Vy~wG~n 383 (885)
.|++++ .+++||.+|-.
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 566555 47899999864
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=63.34 E-value=2.1e+02 Score=33.23 Aligned_cols=67 Identities=22% Similarity=0.345 Sum_probs=33.3
Q ss_pred cEEEEeecC--cEEEEEEcCCcEEEEcCCCCCCcccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCeEEE
Q 002748 357 NIELVACGE--YHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFT 434 (885)
Q Consensus 357 ~I~~Va~G~--~hs~aLt~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~ 434 (885)
.|..++... ++.++=|..|+||.|--++ |.|=.- +...........++--..|.+--..||.|+.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelss---G~LL~v----------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSS---GILLNV----------LSAHYQSITCLKFSDDGSHIITGSKDGAVLV 149 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEecc---ccHHHH----------HHhhccceeEEEEeCCCcEEEecCCCccEEE
Confidence 344454433 3334445899999997662 222110 0111122223333333445555557888888
Q ss_pred ee
Q 002748 435 FG 436 (885)
Q Consensus 435 wG 436 (885)
|=
T Consensus 150 W~ 151 (476)
T KOG0646|consen 150 WL 151 (476)
T ss_pred EE
Confidence 85
No 107
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=62.54 E-value=3.2e+02 Score=32.29 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=50.0
Q ss_pred EEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEeeccCCCcEEEEeecCcEE-EEEEcCCcEEEEcCCC
Q 002748 306 VQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHT-CAVTLSGDLYTWGDGT 384 (885)
Q Consensus 306 I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs-~aLt~dG~Vy~wG~n~ 384 (885)
=.-|.||..|.++.+..|..+.=-. -.++..+...|..|..+++-- +-=+.+|.++.|+.+.
T Consensus 214 nliit~Gk~H~~Fw~~~~~~l~k~~-----------------~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 214 NLIITCGKGHLYFWTLRGGSLVKRQ-----------------GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGT 276 (626)
T ss_pred cEEEEeCCceEEEEEccCCceEEEe-----------------eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCC
Confidence 3447899999999887776554211 111112222344454444332 2334678899998762
Q ss_pred CCCcccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCeEEE
Q 002748 385 YNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFT 434 (885)
Q Consensus 385 ~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~ 434 (885)
+ .+-+ ++. +.-|.-+++++..+|.|.+
T Consensus 277 ~-------------~~~k---------~~~-aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 277 N-------------RISK---------QVH-AHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred c-------------eEEe---------Eee-ecCCceEEEEEecCccEee
Confidence 2 0001 122 4456677888888887777
No 108
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=62.48 E-value=94 Score=37.80 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=31.2
Q ss_pred EEecCCeEEEEeCCCCCcCCCCCCCCCCCeeecc-ccCCCcEE---EEEecCCceeeeecCCeEEEecC
Q 002748 541 ALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEG-KLSKSFVE---EIACGSYHVAVLTSKTEVYTWGK 605 (885)
Q Consensus 541 aLt~dG~Vy~wG~N~~GQLG~~~~~~~~p~~v~~-~l~~~~I~---~Ia~G~~Ht~aLt~~G~Vy~WG~ 605 (885)
+..-+|.||+.|..+. +... . .|+. .+....+. .+.....+..+..-+|++|+-|.
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~----~----~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSAL----S----SVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCcc----c----eEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4455789999995432 1100 0 0110 01112233 34456677777788999999985
No 109
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=62.30 E-value=73 Score=29.87 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=53.7
Q ss_pred EEEEec-CCCceeEEEEEeCCCCeEEEecCC---c-----ceeEEccc--cceeeccccChhhhcCCCCCCCCcEEEEEE
Q 002748 27 LLKYGR-RGKPKFCPFRLSNDESVLIWFSGK---E-----EKHLKLSH--VSRIISGQRTPIFQRYPRPEKEYQSFSLIY 95 (885)
Q Consensus 27 l~K~~~-~~kp~~r~f~l~~d~~~l~W~~~~---~-----~~~i~l~~--I~eVr~G~~t~~f~~~~~~~~~~~~FSii~ 95 (885)
|.+++. +|+.+.|+|+|=. ..|+.+... . +..|.++. |..+.-|.. +. ....-..+|-|+.
T Consensus 8 l~~~s~~~g~~q~R~~FLFD--~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~---~~---~~~~~knafkl~~ 79 (109)
T cd01224 8 ATRQKQNKGWNSSRVLFLFD--HQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKM---FS---SGHTIKNSLKIYS 79 (109)
T ss_pred EEEEecccCCcccEEEEEec--ceEEEEecccccCCcEEEEEEEEcccEEEEECCCCcc---cc---CCceeEEEEEEEE
Confidence 445554 5889999999865 467777521 1 33355543 333333322 10 0112356788888
Q ss_pred cC--ceeEEEeCCHHHHHHHHHHHH
Q 002748 96 ND--RSLDLICKDKDEAEVWFSGLK 118 (885)
Q Consensus 96 ~~--rtLdLva~~~~e~~~Wv~gL~ 118 (885)
.+ +.+.+.|+++|+-..|+.+|.
T Consensus 80 ~~~~~~~~f~~Kt~e~K~~Wm~a~~ 104 (109)
T cd01224 80 ESTDEWYLFSFKSAERKHRWLSAFA 104 (109)
T ss_pred cCCCeEEEEEECCHHHHHHHHHHHH
Confidence 55 889999999999999998774
No 110
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.55 E-value=27 Score=36.83 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=24.6
Q ss_pred CcEEEEeecCcEEEEEEcCCcEEEEcCC
Q 002748 356 MNIELVACGEYHTCAVTLSGDLYTWGDG 383 (885)
Q Consensus 356 ~~I~~Va~G~~hs~aLt~dG~Vy~wG~n 383 (885)
.++..+.|-..+.++||.+|.+|+|--.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 4788899999999999999999999654
No 111
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=60.41 E-value=4 Score=30.25 Aligned_cols=34 Identities=35% Similarity=0.667 Sum_probs=22.6
Q ss_pred cccccccceeeccCCCccccccccCCCCCCCcccchhhHhhhcccc
Q 002748 675 HNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTF 720 (885)
Q Consensus 675 h~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~l~~~~ 720 (885)
.-|..||.++- +.+.+.+..-+||.|-..|.+..
T Consensus 2 r~C~~Cg~~Yh------------~~~~pP~~~~~Cd~cg~~L~qR~ 35 (36)
T PF05191_consen 2 RICPKCGRIYH------------IEFNPPKVEGVCDNCGGELVQRK 35 (36)
T ss_dssp EEETTTTEEEE------------TTTB--SSTTBCTTTTEBEBEEG
T ss_pred cCcCCCCCccc------------cccCCCCCCCccCCCCCeeEeCC
Confidence 35777777763 33344577789999999887654
No 112
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=59.99 E-value=85 Score=29.17 Aligned_cols=89 Identities=19% Similarity=0.279 Sum_probs=53.7
Q ss_pred HHhcCCeEEEE----ecCC-CceeEEEEEeCCCCeEEEecCC---cceeEEccccceeeccccChhhhcCCCCCCCCcEE
Q 002748 20 ALKKGACLLKY----GRRG-KPKFCPFRLSNDESVLIWFSGK---EEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSF 91 (885)
Q Consensus 20 ~L~~G~~l~K~----~~~~-kp~~r~f~l~~d~~~l~W~~~~---~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~F 91 (885)
+|..|...+|. +++| -.+.|.|-|... -+|++.... .+..|+++.-..|. ......|
T Consensus 6 fl~~ge~Il~~g~v~K~kgl~~kkR~liLTd~-PrL~Yvdp~~~~~KGeI~~~~~l~v~--------------~k~~~~F 70 (104)
T PF14593_consen 6 FLNPGELILKQGYVKKRKGLFAKKRQLILTDG-PRLFYVDPKKMVLKGEIPWSKELSVE--------------VKSFKTF 70 (104)
T ss_dssp GTT-T--EEEEEEEEEEETTEEEEEEEEEETT-TEEEEEETTTTEEEEEE--STT-EEE--------------ECSSSEE
T ss_pred hhcCCCeEEEEEEEEEeeceEEEEEEEEEccC-CEEEEEECCCCeECcEEecCCceEEE--------------EccCCEE
Confidence 34446665554 2232 257777778765 788887633 25567776322222 2334689
Q ss_pred EEEEcCceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 002748 92 SLIYNDRSLDLICKDKDEAEVWFSGLKALISRS 124 (885)
Q Consensus 92 Sii~~~rtLdLva~~~~e~~~Wv~gL~~Li~~~ 124 (885)
-|...+|+-.|... ...|..|+.+++.++.+.
T Consensus 71 ~I~tp~RtY~l~d~-~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 71 FIHTPKRTYYLEDP-EGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp EEEETTEEEEEE-T-TS-HHHHHHHHHHHHHHH
T ss_pred EEECCCcEEEEECC-CCCHHHHHHHHHHHHHHh
Confidence 99999999998885 455899999999988653
No 113
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=58.79 E-value=1.8e+02 Score=32.41 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=11.5
Q ss_pred EEEEecCCeEEEEeC
Q 002748 539 TVALTTSGHVYTMGS 553 (885)
Q Consensus 539 t~aLt~dG~Vy~wG~ 553 (885)
..++.-+|+||++|-
T Consensus 315 ~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 315 GVSVSWNNGVLLIGG 329 (346)
T ss_pred eEEEEcCCEEEEEec
Confidence 345667899999994
No 114
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=58.22 E-value=1e+02 Score=37.55 Aligned_cols=53 Identities=17% Similarity=0.319 Sum_probs=29.7
Q ss_pred CCcEEEEeCCCCCCCCCCCCCceeecEEeeccCCCCeEE---EEecCCEEEEEecCCeEEEEeC
Q 002748 493 SGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCR---VACGHSLTVALTTSGHVYTMGS 553 (885)
Q Consensus 493 ~G~vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~---Ia~G~~ht~aLt~dG~Vy~wG~ 553 (885)
++.||+.|-.+. +... .......|. ...... ......+.-+..-+|++|+.|-
T Consensus 475 ~~~iYvvGG~~~-~~~~-~~VE~ydp~------~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 475 NGKIYVVGGFDG-TSAL-SSVERYDPE------TNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CCEEEEECCccC-CCcc-ceEEEEcCC------CCceeEcccCccccccccEEEECCEEEEEec
Confidence 899999997543 1110 111112221 122222 3446666667778899999995
No 115
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=57.94 E-value=2.6e+02 Score=31.78 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=13.3
Q ss_pred ceEEEEecCCeEEEeecC
Q 002748 421 WHTAVVTSAGQLFTFGDG 438 (885)
Q Consensus 421 ~ht~aLt~~G~Vy~wG~n 438 (885)
.|+++...+|+||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466665568999999953
No 116
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=57.84 E-value=18 Score=33.50 Aligned_cols=37 Identities=5% Similarity=0.310 Sum_probs=30.8
Q ss_pred CCCCCCCcEEEEEEcCc--eeEEEeCCHHHHHHHHHHHH
Q 002748 82 PRPEKEYQSFSLIYNDR--SLDLICKDKDEAEVWFSGLK 118 (885)
Q Consensus 82 ~~~~~~~~~FSii~~~r--tLdLva~~~~e~~~Wv~gL~ 118 (885)
.+.++.-.||.|+..++ ++=|.|.++++...|+.++.
T Consensus 64 ~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 64 TESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred cCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 34456677999999775 89999999999999998764
No 117
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.07 E-value=43 Score=35.36 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=43.6
Q ss_pred CEEEEEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEee-----ccCCCcEEEEeec-CcEEEEEEcCCcEE
Q 002748 305 DVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLID-----ALSNMNIELVACG-EYHTCAVTLSGDLY 378 (885)
Q Consensus 305 ~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~-----~l~~~~I~~Va~G-~~hs~aLt~dG~Vy 378 (885)
.+..+.|-+.+.++||.+|.+|+|--...-.+ +... ...|..-. ......|+.+... ...-++...+|+.|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~-~~~~--Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y 90 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAV-LPPV--SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSY 90 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeec-cCCc--cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence 68889999999999999999999974432111 1110 00111100 0223455555443 23344555678888
Q ss_pred EEcCC
Q 002748 379 TWGDG 383 (885)
Q Consensus 379 ~wG~n 383 (885)
.|-.+
T Consensus 91 ~y~~~ 95 (219)
T PF07569_consen 91 SYSPD 95 (219)
T ss_pred Eeccc
Confidence 88544
No 118
>PF15404 PH_4: Pleckstrin homology domain
Probab=56.82 E-value=78 Score=32.56 Aligned_cols=19 Identities=11% Similarity=0.585 Sum_probs=16.4
Q ss_pred EEEeCCHHHHHHHHHHHHH
Q 002748 101 DLICKDKDEAEVWFSGLKA 119 (885)
Q Consensus 101 dLva~~~~e~~~Wv~gL~~ 119 (885)
=+.|.+..|++.||..|.+
T Consensus 165 VF~ARSRqERD~WV~~I~~ 183 (185)
T PF15404_consen 165 VFMARSRQERDLWVLAINT 183 (185)
T ss_pred EEEeccHHHHHHHHHHHHh
Confidence 4789999999999998764
No 119
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=54.41 E-value=3.7e+02 Score=30.52 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=13.3
Q ss_pred cEEEEEEcCCcEEEEcCC
Q 002748 366 YHTCAVTLSGDLYTWGDG 383 (885)
Q Consensus 366 ~hs~aLt~dG~Vy~wG~n 383 (885)
.|+++...+|+||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999965
No 120
>PHA02790 Kelch-like protein; Provisional
Probab=52.88 E-value=1.5e+02 Score=35.08 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=10.6
Q ss_pred EEEcCCcEEEEcCC
Q 002748 370 AVTLSGDLYTWGDG 383 (885)
Q Consensus 370 aLt~dG~Vy~wG~n 383 (885)
++.-+|.||..|..
T Consensus 314 ~v~~~~~iYviGG~ 327 (480)
T PHA02790 314 GVPANNKLYVVGGL 327 (480)
T ss_pred EEEECCEEEEECCc
Confidence 34568999999864
No 121
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=52.61 E-value=93 Score=29.78 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=15.2
Q ss_pred EEeCCHHHHHHHHHHHH
Q 002748 102 LICKDKDEAEVWFSGLK 118 (885)
Q Consensus 102 Lva~~~~e~~~Wv~gL~ 118 (885)
|.|++++|++.|+..|+
T Consensus 104 lsaDt~eer~~W~~ain 120 (122)
T cd01263 104 LSADTKEERQTWLSLLN 120 (122)
T ss_pred EecCCHHHHHHHHHHHh
Confidence 56899999999999886
No 122
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=52.20 E-value=1.8e+02 Score=31.37 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=24.6
Q ss_pred cccEEeeccCCCcEEE-EeecCcEEEEE-EcCCcEEEEcCC
Q 002748 345 LHPKLIDALSNMNIEL-VACGEYHTCAV-TLSGDLYTWGDG 383 (885)
Q Consensus 345 ~~P~~V~~l~~~~I~~-Va~G~~hs~aL-t~dG~Vy~wG~n 383 (885)
..|..+..-.+ .|+. +-|-+.|+++- ++++.|-.|-.-
T Consensus 134 App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 134 APPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEec
Confidence 44555554332 3444 46888888776 788999999654
No 123
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=52.07 E-value=3.6 Score=42.07 Aligned_cols=31 Identities=39% Similarity=0.722 Sum_probs=16.0
Q ss_pred ccccCccccccCCCcccc------------cccccccccceeec
Q 002748 655 VDQSMCSGCRLPFNNFKR------------KRHNCYNCGLVFCH 686 (885)
Q Consensus 655 ~d~s~C~~C~~~F~~f~r------------krh~C~~CG~v~C~ 686 (885)
.+.-.|..|...|+ +.| |||-|.-||+.|-.
T Consensus 115 ~d~ftCrvCgK~F~-lQRmlnrh~kch~~vkr~lct~cgkgfnd 157 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFG-LQRMLNRHLKCHSDVKRHLCTFCGKGFND 157 (267)
T ss_pred CCeeeeehhhhhhh-HHHHHHHHhhhccHHHHHHHhhccCcccc
Confidence 33444555666655 222 35556666665543
No 124
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.74 E-value=88 Score=33.87 Aligned_cols=85 Identities=25% Similarity=0.379 Sum_probs=54.9
Q ss_pred CCeEEEEecC-CC-ceeEEEEEeCCCCeEEEec---CC-cceeEEccc--cceeeccccChhhhcCCCCCCCCcEEEEEE
Q 002748 24 GACLLKYGRR-GK-PKFCPFRLSNDESVLIWFS---GK-EEKHLKLSH--VSRIISGQRTPIFQRYPRPEKEYQSFSLIY 95 (885)
Q Consensus 24 G~~l~K~~~~-~k-p~~r~f~l~~d~~~l~W~~---~~-~~~~i~l~~--I~eVr~G~~t~~f~~~~~~~~~~~~FSii~ 95 (885)
-.+|+|.+.+ -+ -|+|.|.|... +|.++. .| +..-|+|.. |++|---++ ..||-|.-
T Consensus 263 EGWLlKlgg~rvktWKrRWFiLtdN--CLYYFe~tTDKEPrGIIpLeNlsir~VedP~k-------------P~cfEly~ 327 (395)
T KOG0930|consen 263 EGWLLKLGGNRVKTWKRRWFILTDN--CLYYFEYTTDKEPRGIIPLENLSIREVEDPKK-------------PNCFELYI 327 (395)
T ss_pred cceeeeecCCcccchhheeEEeecc--eeeeeeeccCCCCCcceeccccceeeccCCCC-------------CCeEEEec
Confidence 3578899663 22 26677877765 777765 33 455677764 344433332 34555443
Q ss_pred ---------------------cC-ceeEEEeCCHHHHHHHHHHHHHHHHc
Q 002748 96 ---------------------ND-RSLDLICKDKDEAEVWFSGLKALISR 123 (885)
Q Consensus 96 ---------------------~~-rtLdLva~~~~e~~~Wv~gL~~Li~~ 123 (885)
|. ..--+-|.++||.+.|+..+++.|++
T Consensus 328 ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 328 PSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred CCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 22 23458899999999999999999984
No 125
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=50.48 E-value=4.6 Score=44.53 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=29.8
Q ss_pred EcCCCccceeeeecccccccccCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCc--ccchhhHh
Q 002748 637 ACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPY--RVCDNCFN 714 (885)
Q Consensus 637 acG~~hT~al~~~kwvs~~d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~--RVC~~C~~ 714 (885)
.||+...+.+....-..+...-.|+.|+..+. ..|..|..||..-- ..+..+.......+ -||+.|..
T Consensus 177 vCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~---~~R~~Cp~Cg~~~~-------~~l~~~~~e~~~~~rve~C~~C~~ 246 (290)
T PF04216_consen 177 VCGSPPVLSVLRGGEREGKRYLHCSLCGTEWR---FVRIKCPYCGNTDH-------EKLEYFTVEGEPAYRVEVCESCGS 246 (290)
T ss_dssp TT---EEEEEEE------EEEEEETTT--EEE-----TTS-TTT---SS--------EEE--------SEEEEEETTTTE
T ss_pred CCCCcCceEEEecCCCCccEEEEcCCCCCeee---ecCCCCcCCCCCCC-------cceeeEecCCCCcEEEEECCcccc
Confidence 36666666554321112334456777877644 33566777764321 11222212222344 49999999
Q ss_pred hhcccc
Q 002748 715 KLRKTF 720 (885)
Q Consensus 715 ~l~~~~ 720 (885)
.++...
T Consensus 247 YlK~vd 252 (290)
T PF04216_consen 247 YLKTVD 252 (290)
T ss_dssp EEEEEE
T ss_pred hHHHHh
Confidence 987766
No 126
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.18 E-value=7.5e+02 Score=32.80 Aligned_cols=217 Identities=16% Similarity=0.135 Sum_probs=106.5
Q ss_pred EEEEcCCcEEEEeCCCCCCcCCCCCCC--ccccEEeeccCCCcEEEEeecCcEEEEEEcCCcEEEEcCCCCCCcccCCCC
Q 002748 317 ALVNKQGEVFSWGEESGGRLGHGVDSD--VLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGN 394 (885)
Q Consensus 317 ~~Lt~dG~Vy~wG~N~~GqLG~g~~~~--~~~P~~V~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~g~ 394 (885)
+-+|.|.++|.|-.|..+++-.-+... +..-.+|..-.++-+-.| .|.++|..--+|+..|-... ....+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~-~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFD-EFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEec-cccCcccc
Confidence 458899999999998877664322211 111122222222222222 58889998889998885421 12222221
Q ss_pred CcceeeeeeecCCCCCceEEEEeeCCceEEEEe-cCCeEEEe----ecCCCcc-cCCC----CCcccccceeee--ccCC
Q 002748 395 EVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVT-SAGQLFTF----GDGTFGV-LGHG----DRKSVSIPREVE--SLKG 462 (885)
Q Consensus 395 ~~~~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt-~~G~Vy~w----G~n~~GQ-LG~g----~~~~~~~P~~V~--~l~~ 462 (885)
.... +..+.+|..|..|++-.+-=++++ .+|.||-. +++-|++ +-.- ..-....|.... +...
T Consensus 168 f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNTS-----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccc-----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 1111 222345666776665444444444 55555433 2333333 1110 011122344222 1224
Q ss_pred CeEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCCCCCCCC---------ceeecEEeeccCCCCeEEEE
Q 002748 463 LRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE---------AKLVPTCVAALVEPNFCRVA 533 (885)
Q Consensus 463 ~~I~~VacG~~ht~alte~~~~~s~~~~~~~G~vy~WG~n~~GQLG~g~~~---------~~~~P~~V~~l~~~~I~~Ia 533 (885)
..|.+++-+....+..+- ...|.|-+|--...|+-+.-... ....-..+....-..|++|.
T Consensus 243 dpI~qi~ID~SR~IlY~l----------sek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~ 312 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVL----------SEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSIS 312 (1311)
T ss_pred CcceeeEeccccceeeee----------ccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEec
Confidence 478899988888777663 14677766655544443321100 00000011111113445543
Q ss_pred ------ecCCEEEEEecCC-eEEEEeC
Q 002748 534 ------CGHSLTVALTTSG-HVYTMGS 553 (885)
Q Consensus 534 ------~G~~ht~aLt~dG-~Vy~wG~ 553 (885)
.-+-|.+|+|..| ++|.-|+
T Consensus 313 ~l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 313 PLSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred ccCcccccceeEEEEecCCeEEEEecc
Confidence 3456899999999 5777664
No 127
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.84 E-value=1.3 Score=49.37 Aligned_cols=64 Identities=25% Similarity=0.590 Sum_probs=50.3
Q ss_pred cccccccccCccccccCCCccccccccccc--ccceeeccCCCccccccccCCCCCCCcccchhhHhhhcc
Q 002748 650 KWVSGVDQSMCSGCRLPFNNFKRKRHNCYN--CGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 718 (885)
Q Consensus 650 kwvs~~d~s~C~~C~~~F~~f~rkrh~C~~--CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~l~~ 718 (885)
.|....+...|..|...|..++.. .+|.. |+.+||..|+.-. .+.+.+ ..|..||.-|...+..
T Consensus 461 e~ql~~~ve~c~~~~aS~~slk~e-~erl~qq~eqi~~~~~~Kat--vp~l~~--e~~akv~rlq~eL~~s 526 (542)
T KOG0993|consen 461 EWQLDDDVEQCSNCDASFASLKVE-PERLHQQCEQIFCMNCLKAT--VPSLPN--ERPAKVCRLQHELLNS 526 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhHHHhh--cccccc--cchHHHHHHHHHHhhh
Confidence 388889999999999999866554 55654 9999999998665 455554 4788999999987743
No 128
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=46.18 E-value=2.8e+02 Score=29.85 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=27.3
Q ss_pred eEEEEeeCCceEEEEecCCeEEEeecCCCcc-cCCCCCcccccceeee
Q 002748 412 HVSSISCGPWHTAVVTSAGQLFTFGDGTFGV-LGHGDRKSVSIPREVE 458 (885)
Q Consensus 412 ~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GQ-LG~g~~~~~~~P~~V~ 458 (885)
.|-.++.-..|.+ .--+|.||+|-+|.+-. ++....-....|..+.
T Consensus 64 piy~~~f~d~~Ll-s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~ 110 (325)
T KOG0649|consen 64 PIYYLAFHDDFLL-SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVD 110 (325)
T ss_pred Ceeeeeeehhhee-eccCceEEEeeehhhhhhccchhhhhhcCccccC
Confidence 5666665554443 34469999999998765 4443333344455543
No 129
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.57 E-value=17 Score=30.71 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=20.5
Q ss_pred chhhHHhhHHHHHHHHHHHHhhhhc
Q 002748 860 VDDAKRTNDSLSQEVIKLRAQVFAF 884 (885)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (885)
+++||..|..|.||++.++.+.+.|
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 6889999999999999887766554
No 130
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=43.89 E-value=94 Score=29.64 Aligned_cols=84 Identities=11% Similarity=0.126 Sum_probs=47.0
Q ss_pred ceeEEEEEeCCCCeEEEecCCc---------ceeEEc-cccceeeccccChhhhcCCCCCCCCcEEEEEEc-------Cc
Q 002748 36 PKFCPFRLSNDESVLIWFSGKE---------EKHLKL-SHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYN-------DR 98 (885)
Q Consensus 36 p~~r~f~l~~d~~~l~W~~~~~---------~~~i~l-~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~-------~r 98 (885)
...|.|-+-.|.+-+++..... ...|++ +..-.|+.=-.+++.+-.+. +-.+=|=|-.. ..
T Consensus 19 GW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~k--DiP~If~I~~~~~~~~~~~~ 96 (122)
T cd01243 19 GWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKK--DIPCIFRVTTSQISASSSKC 96 (122)
T ss_pred CceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcc--cCCeEEEEEEecccCCCCcc
Confidence 4455555555524445553221 133555 33344443334444333222 22344444442 28
Q ss_pred eeEEEeCCHHHHHHHHHHHHHHH
Q 002748 99 SLDLICKDKDEAEVWFSGLKALI 121 (885)
Q Consensus 99 tLdLva~~~~e~~~Wv~gL~~Li 121 (885)
+|-|.|+++.|.+.||..|.-|-
T Consensus 97 ~~~~lA~s~~eK~kWV~aL~~l~ 119 (122)
T cd01243 97 STLMLADTEEEKSKWVGALSELH 119 (122)
T ss_pred EEEEEeCCchHHHHHHHHHHHHH
Confidence 89999999999999999998774
No 131
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=43.79 E-value=21 Score=37.77 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=26.2
Q ss_pred ccccccccCccccccCCCc------ccccccccccccceee
Q 002748 651 WVSGVDQSMCSGCRLPFNN------FKRKRHNCYNCGLVFC 685 (885)
Q Consensus 651 wvs~~d~s~C~~C~~~F~~------f~rkrh~C~~CG~v~C 685 (885)
|-.-.+.+.|.+|+..|.. +.-...||.+|+..|=
T Consensus 126 vp~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~ 166 (278)
T PF15135_consen 126 VPQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFR 166 (278)
T ss_pred cCcccccccccccccccCCCccccccceeeeecccccccch
Confidence 3455789999999999873 2233678999998884
No 132
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=43.11 E-value=4.9e+02 Score=28.66 Aligned_cols=17 Identities=6% Similarity=0.030 Sum_probs=11.7
Q ss_pred ceeeeecCCeEEEecCC
Q 002748 590 HVAVLTSKTEVYTWGKG 606 (885)
Q Consensus 590 Ht~aLt~~G~Vy~WG~n 606 (885)
++.+...++++|+.|-.
T Consensus 216 ~~~~~~~~~~iyv~GG~ 232 (323)
T TIGR03548 216 AASIKINESLLLCIGGF 232 (323)
T ss_pred eeEEEECCCEEEEECCc
Confidence 34444567899999854
No 133
>PHA02713 hypothetical protein; Provisional
Probab=39.56 E-value=3.1e+02 Score=33.17 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=8.9
Q ss_pred CCcEEEEeCC
Q 002748 493 SGKLFTWGDG 502 (885)
Q Consensus 493 ~G~vy~WG~n 502 (885)
+|+||++|-.
T Consensus 351 ~g~IYviGG~ 360 (557)
T PHA02713 351 DDTIYAIGGQ 360 (557)
T ss_pred CCEEEEECCc
Confidence 8999999974
No 134
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=39.32 E-value=6.6e+02 Score=29.07 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=40.9
Q ss_pred CEEEEEe-cCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEee--ccCCCcEEEEeecCcEEEEEEcCCcEEEEc
Q 002748 305 DVQNIAC-GGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLID--ALSNMNIELVACGEYHTCAVTLSGDLYTWG 381 (885)
Q Consensus 305 ~I~~Ia~-G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~--~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG 381 (885)
+|+.+.- -..+.++|+++|.|+..- ..|.. ....+..+. .....+|-.+..+.+-.++||.++++|.-=
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVN 153 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEe
Confidence 5655554 356788999999988763 32332 111122221 111223444566666788999999999883
No 135
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=39.19 E-value=9.3e+02 Score=30.70 Aligned_cols=121 Identities=13% Similarity=0.077 Sum_probs=63.3
Q ss_pred EecCCeEEEEEcCCcEEEEeCCCC---CCcCCCCCCCccccEEeeccCCCcEEEEee-----cCcEEEEEEcCCcEEEEc
Q 002748 310 ACGGRHAALVNKQGEVFSWGEESG---GRLGHGVDSDVLHPKLIDALSNMNIELVAC-----GEYHTCAVTLSGDLYTWG 381 (885)
Q Consensus 310 a~G~~hs~~Lt~dG~Vy~wG~N~~---GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~-----G~~hs~aLt~dG~Vy~wG 381 (885)
+....+.+++|+.|++|..-...- +..+.|.. ....+....+.+|+.+.+ -....+++|.+|.+.-.-
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~----i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~ 618 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKP----IVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTS 618 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcC----HHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEE
Confidence 344566899999999999843211 11111111 111223334566776654 223578889999777654
Q ss_pred CCCCCC-cccCCCCCcceeeeeeecCCCCCceEEEEe--eCCceEEEEecCCeEEEeecCCCcccC
Q 002748 382 DGTYNF-GLLGHGNEVSHWVPKRVNGPLEGIHVSSIS--CGPWHTAVVTSAGQLFTFGDGTFGVLG 444 (885)
Q Consensus 382 ~n~~~~-GqLG~g~~~~~~~P~~v~~~l~~~~Iv~Ia--cG~~ht~aLt~~G~Vy~wG~n~~GQLG 444 (885)
.+.+.. ...|. .....-++..++.+. ....+.+++|++|++|.+-....-..|
T Consensus 619 l~~~~~~~r~G~----------~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~g 674 (800)
T TIGR01063 619 LTEFSNIRSNGI----------IAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMG 674 (800)
T ss_pred hHHhhhhccCCc----------ccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcC
Confidence 332110 00010 000001233454443 344578999999999998755443333
No 136
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=37.83 E-value=48 Score=23.90 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.4
Q ss_pred eEEEEeeCC-ceEEEEecCCeEEEe
Q 002748 412 HVSSISCGP-WHTAVVTSAGQLFTF 435 (885)
Q Consensus 412 ~Iv~IacG~-~ht~aLt~~G~Vy~w 435 (885)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 699999999 899999999999853
No 137
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.77 E-value=23 Score=33.22 Aligned_cols=33 Identities=36% Similarity=0.851 Sum_probs=25.3
Q ss_pred ccCccccccCCCcc---------cccccccccccceeeccCC
Q 002748 657 QSMCSGCRLPFNNF---------KRKRHNCYNCGLVFCHSCS 689 (885)
Q Consensus 657 ~s~C~~C~~~F~~f---------~rkrh~C~~CG~v~C~~Cs 689 (885)
...|.+|..+|..- ...|..|..|...||.+|=
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 96 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCD 96 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccc
Confidence 45699999998732 2236679999999999983
No 138
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=36.53 E-value=18 Score=35.95 Aligned_cols=12 Identities=42% Similarity=1.140 Sum_probs=6.9
Q ss_pred ccccccccccee
Q 002748 673 KRHNCYNCGLVF 684 (885)
Q Consensus 673 krh~C~~CG~v~ 684 (885)
++++|.+||.-|
T Consensus 27 ~~~~c~~c~~~f 38 (154)
T PRK00464 27 RRRECLACGKRF 38 (154)
T ss_pred eeeeccccCCcc
Confidence 346666666554
No 139
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=35.67 E-value=10 Score=30.43 Aligned_cols=29 Identities=38% Similarity=0.941 Sum_probs=16.5
Q ss_pred ccccccCCCccc-----ccccccccccceeeccC
Q 002748 660 CSGCRLPFNNFK-----RKRHNCYNCGLVFCHSC 688 (885)
Q Consensus 660 C~~C~~~F~~f~-----rkrh~C~~CG~v~C~~C 688 (885)
|.+|..+|..-. ..+..|..|...||.+|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC 35 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC 35 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc
Confidence 678888887321 25788999999999987
No 140
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.61 E-value=65 Score=26.77 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=25.1
Q ss_pred CCCCcccchhhHHhhHHHHHHHHHHHHhhh
Q 002748 853 LTSPKIVVDDAKRTNDSLSQEVIKLRAQVF 882 (885)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (885)
-..+...+++|...-.+|..||.++++++.
T Consensus 16 ~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 16 EDLSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred CCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556689999999999999999999765
No 141
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=33.89 E-value=6.5e+02 Score=27.33 Aligned_cols=62 Identities=15% Similarity=0.262 Sum_probs=38.6
Q ss_pred eecCcEEEEEEcCCcEEEEcCCCCCCcccCCCCCcceeeeeeecCCCCCceEEEEeeCCc--eEEEEecCCeEEEeec
Q 002748 362 ACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPW--HTAVVTSAGQLFTFGD 437 (885)
Q Consensus 362 a~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~IacG~~--ht~aLt~~G~Vy~wG~ 437 (885)
---..+.+.-+.+|.|+.|--..+ ......+|. ....|.+++...+ -.+++++.|++|+|-.
T Consensus 133 hpnQteLis~dqsg~irvWDl~~~--------~c~~~liPe------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 133 HPNQTELISGDQSGNIRVWDLGEN--------SCTHELIPE------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred cCCcceEEeecCCCcEEEEEccCC--------ccccccCCC------CCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 344556667788999999965532 111122222 2345767666554 4567788999999974
No 142
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=33.85 E-value=75 Score=22.85 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.8
Q ss_pred CcEEEEeecC-cEEEEEEcCCcEEEE
Q 002748 356 MNIELVACGE-YHTCAVTLSGDLYTW 380 (885)
Q Consensus 356 ~~I~~Va~G~-~hs~aLt~dG~Vy~w 380 (885)
..+++|++|. ....+|+.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3789999999 889999999999864
No 143
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=33.15 E-value=1.3e+02 Score=37.16 Aligned_cols=96 Identities=16% Similarity=0.361 Sum_probs=57.8
Q ss_pred CeEEEEecC--CC--ceeEEEEEeCCCCeEEEecCCcceeEEccccceeeccccChhhhcCCCCCCCCcEEEEE--E---
Q 002748 25 ACLLKYGRR--GK--PKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLI--Y--- 95 (885)
Q Consensus 25 ~~l~K~~~~--~k--p~~r~f~l~~d~~~l~W~~~~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii--~--- 95 (885)
.+|.-|+++ |. ++.|+|.|... .+..+..++... ..=|+....+..+.+=.+ .++....+-|-++ |
T Consensus 8 GW~y~~g~~kig~~~~~~Ry~vl~~~--~~~~yK~~P~~~--~~pirs~~id~~~rVed~-Gr~~~~g~~~yvl~~Yn~~ 82 (719)
T PLN00188 8 GWMVRYGRRKIGRSYIHMRYFVLESR--LLAYYKKKPQDN--QVPIKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKK 82 (719)
T ss_pred eEEEEEcccccccccceeEEEEEecc--hhhhcccCCccc--cccceeeccCCCceEeec-CceEEcCceEEEEEEecCC
Confidence 357777665 33 67788888764 666665433222 333444555555533222 1122222333332 2
Q ss_pred -cCceeEEEeCCHHHHHHHHHHHHHHHHccc
Q 002748 96 -NDRSLDLICKDKDEAEVWFSGLKALISRSH 125 (885)
Q Consensus 96 -~~rtLdLva~~~~e~~~Wv~gL~~Li~~~~ 125 (885)
+++.+-+-|.+.|||..|+..|+..+.+.+
T Consensus 83 ~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~ 113 (719)
T PLN00188 83 EKYHRITMAAFNIQEALIWKEKIESVIDQHQ 113 (719)
T ss_pred CccccEEEecCCHHHHHHHHHHHHHHHhhhc
Confidence 238899999999999999999999999653
No 144
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=32.59 E-value=8.7e+02 Score=28.45 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=76.0
Q ss_pred ccccccCCCCcceecCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceeecccCCCCEEEEEecCCeEEEEE--
Q 002748 243 SAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVN-- 320 (885)
Q Consensus 243 s~~s~~s~G~~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt-- 320 (885)
.++.+...|....+-+..|++|+|=-+. |.|=.-- ...-..|..|...++-.+++|
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelss--G~LL~v~--------------------~aHYQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSS--GILLNVL--------------------SAHYQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEecc--ccHHHHH--------------------HhhccceeEEEEeCCCcEEEecC
Confidence 4555566677777778899999998877 3332100 001113555544444444444
Q ss_pred cCCcEEEEeCCCCCCcCCCCCCCccccEEeeccC--CCcEEEEeecCcEEEEEEcCCcEEEEcCCCCCCcccCCCCCcce
Q 002748 321 KQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALS--NMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSH 398 (885)
Q Consensus 321 ~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~--~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~g~~~~~ 398 (885)
+||.|++|=--.-- ...+...|.++..+. ...|.++.+|..- .+++||+-+.... ..+=.-.. -
T Consensus 143 kDg~V~vW~l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t--~k~wdlS~--g 208 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLV-----SADNDHSVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASEDRT--IKLWDLSL--G 208 (476)
T ss_pred CCccEEEEEEEeec-----ccccCCCccceeeeccCcceeEEEEecCCC-----ccceEEEecCCce--EEEEEecc--c
Confidence 78999998632210 011111444444443 3357777666553 2344444433210 00000000 0
Q ss_pred eeeeeecCCCCCceEEEEeeCCceEEEEecCCeEEEee
Q 002748 399 WVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFG 436 (885)
Q Consensus 399 ~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG 436 (885)
..-..+.+| ...+.+.+.-+..+.++=+++|++|..-
T Consensus 209 ~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 209 VLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eeeEEEecC-CcceeEEEcccccEEEecCCcceEEeee
Confidence 011112211 1123344455677777778999888653
No 145
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=32.12 E-value=1.1e+03 Score=29.50 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=63.1
Q ss_pred cceecCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceeecccCCCCEEEEEecCCeEEEEE--cCCcEEEEeC
Q 002748 253 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVN--KQGEVFSWGE 330 (885)
Q Consensus 253 ~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt--~dG~Vy~wG~ 330 (885)
.+..+...|+-.++|... -|||+.-.=.. .....+...+ ..+|..++-...-.+++| +||+|-.|-.
T Consensus 311 ~t~~~N~tGDWiA~g~~k-lgQLlVweWqs-EsYVlKQQgH---------~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~ 379 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSK-LGQLLVWEWQS-ESYVLKQQGH---------SDRITSLAYSPDGQLIATGAEDGKVKVWNT 379 (893)
T ss_pred eEEEecccCCEEEEcCCc-cceEEEEEeec-cceeeecccc---------ccceeeEEECCCCcEEEeccCCCcEEEEec
Confidence 446788889999999988 88888654100 0000001111 123545544444333333 6788888875
Q ss_pred CCCCCcCCCCCCCccccEEeeccCCCcEEEEeecCcEEEEEEcCCcEEEEcCCCC
Q 002748 331 ESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTY 385 (885)
Q Consensus 331 N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLt~dG~Vy~wG~n~~ 385 (885)
.+.-.+ -+.-+.-.++..++...-.+..+-..-||.|-.|--..|
T Consensus 380 ~SgfC~----------vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 380 QSGFCF----------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred cCceEE----------EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 442211 011111234456667777777777888999999987743
No 146
>COG5570 Uncharacterized small protein [Function unknown]
Probab=31.29 E-value=42 Score=26.89 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.6
Q ss_pred cccchhhHHhhHHHHHHHHHHHHhh
Q 002748 857 KIVVDDAKRTNDSLSQEVIKLRAQV 881 (885)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (885)
...+.+||...=.|++||.+|++|+
T Consensus 32 d~~i~eLKRrKL~lKeeIEkLka~~ 56 (57)
T COG5570 32 DLAIRELKRRKLRLKEEIEKLKAQM 56 (57)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3456789999999999999999996
No 147
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=30.10 E-value=2.2e+02 Score=26.42 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=41.1
Q ss_pred EecCCcceeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEcCce-eEEEeCCHHHHHHHHHHHHH
Q 002748 52 WFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRS-LDLICKDKDEAEVWFSGLKA 119 (885)
Q Consensus 52 W~~~~~~~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~~rt-LdLva~~~~e~~~Wv~gL~~ 119 (885)
|.+++++-.+..+.|.|||.-..= +-.+...-|-|=..+.+ .=|.|.|+++.+.|+..|+.
T Consensus 45 PKssrpk~~v~C~~I~EvR~tt~L-------EmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 45 PKSSKPKLQVACSSISEVRECTRL-------EMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred CCCCCCccccchhhhhhhhhcccc-------cccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 344567777999999999864322 11223455666554433 44789999999999998864
No 148
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=29.82 E-value=49 Score=39.25 Aligned_cols=41 Identities=17% Similarity=0.423 Sum_probs=34.6
Q ss_pred CCCCCcEEEEEEcC-ceeEEEeCCHHHHHHHHHHHHHHHHcc
Q 002748 84 PEKEYQSFSLIYND-RSLDLICKDKDEAEVWFSGLKALISRS 124 (885)
Q Consensus 84 ~~~~~~~FSii~~~-rtLdLva~~~~e~~~Wv~gL~~Li~~~ 124 (885)
.+.|+-||-||--. .+-+++|.+-||++.||.+++.=|-..
T Consensus 441 ndEEde~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaS 482 (749)
T KOG0705|consen 441 NDEEDECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILAS 482 (749)
T ss_pred CccccceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHH
Confidence 46778899999855 999999999999999999997755443
No 149
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=29.67 E-value=28 Score=28.71 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=24.4
Q ss_pred ccCccccccCCCccc-ccccccccccceeeccCCCcc
Q 002748 657 QSMCSGCRLPFNNFK-RKRHNCYNCGLVFCHSCSSKK 692 (885)
Q Consensus 657 ~s~C~~C~~~F~~f~-rkrh~C~~CG~v~C~~Css~~ 692 (885)
...|..|+.....-. --.+-|.+||.+.-..|...+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CR 45 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKCR 45 (61)
T ss_pred CceeccCCCEeccCCceeEeeCCCCCceeeehhhhHH
Confidence 456777877653111 125779999988888887666
No 150
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.58 E-value=20 Score=34.33 Aligned_cols=52 Identities=35% Similarity=0.741 Sum_probs=36.2
Q ss_pred cccCccccccC-CCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHhh
Q 002748 656 DQSMCSGCRLP-FNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNK 715 (885)
Q Consensus 656 d~s~C~~C~~~-F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~ 715 (885)
+-..|..|... |. -.. -|.|..|-.-||..|..+-.+.. +|-.-||..|-..
T Consensus 64 ddatC~IC~KTKFA-DG~-GH~C~YCq~r~CARCGGrv~lrs------NKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 64 DDATCGICHKTKFA-DGC-GHNCSYCQTRFCARCGGRVSLRS------NKVMWVCNLCRKQ 116 (169)
T ss_pred cCcchhhhhhcccc-ccc-CcccchhhhhHHHhcCCeeeecc------CceEEeccCCcHH
Confidence 44567777764 54 222 49999999999999987754332 4656689999754
No 151
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.21 E-value=9.7 Score=38.36 Aligned_cols=48 Identities=27% Similarity=0.555 Sum_probs=32.1
Q ss_pred cCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHhhhcc
Q 002748 658 SMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 718 (885)
Q Consensus 658 s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~l~~ 718 (885)
..|..|-..|. .+.----+||.+||..|-..-. +.-++|.-|..++.+
T Consensus 132 ~~CPiCl~~~s---ek~~vsTkCGHvFC~~Cik~al----------k~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 132 YKCPICLDSVS---EKVPVSTKCGHVFCSQCIKDAL----------KNTNKCPTCRKKITH 179 (187)
T ss_pred cCCCceecchh---hccccccccchhHHHHHHHHHH----------HhCCCCCCcccccch
Confidence 56777777654 2222335799999999976642 334779999877654
No 152
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=28.08 E-value=1.8e+02 Score=27.46 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.0
Q ss_pred CCCCcEEEEEEcC-ceeEEEeCCHHHHHHHHHHHHHH
Q 002748 85 EKEYQSFSLIYND-RSLDLICKDKDEAEVWFSGLKAL 120 (885)
Q Consensus 85 ~~~~~~FSii~~~-rtLdLva~~~~e~~~Wv~gL~~L 120 (885)
.+-...|-|...+ ...=|.|.|++|.+.|+..|++.
T Consensus 81 ~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 81 TKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp TTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence 3457889999876 67779999999999999999874
No 153
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.84 E-value=5.6e+02 Score=33.91 Aligned_cols=159 Identities=19% Similarity=0.142 Sum_probs=81.4
Q ss_pred EEEecCCeEEEeecCCCcccCCCCCcc--cccceeeeccCCCeEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeC
Q 002748 424 AVVTSAGQLFTFGDGTFGVLGHGDRKS--VSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGD 501 (885)
Q Consensus 424 ~aLt~~G~Vy~wG~n~~GQLG~g~~~~--~~~P~~V~~l~~~~I~~VacG~~ht~alte~~~~~s~~~~~~~G~vy~WG~ 501 (885)
+-+|.|.+||.|-.+..+++-.-+... +..-..|..-.|+=+.. ..|.++|. ..-+|+..|-
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvva------------T~~ei~ilgV 156 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVA------------TPVEIVILGV 156 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEec------------ccceEEEEEE
Confidence 457889999999988766654322211 11111111111211111 24777776 4677777774
Q ss_pred CCC-CCCCCCCCCceeecEEeeccCCCCeEEEEe-cCCEEEEE-ecCCeEEEEeCCCC-----CcCCCCCC---------
Q 002748 502 GDK-GRLGHGDKEAKLVPTCVAALVEPNFCRVAC-GHSLTVAL-TTSGHVYTMGSPVY-----GQLGNPQA--------- 564 (885)
Q Consensus 502 n~~-GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~-G~~ht~aL-t~dG~Vy~wG~N~~-----GQLG~~~~--------- 564 (885)
... ...+...... ..+|.. |-+-+++. |++|+||.-|.+.. .|.+.+-.
T Consensus 157 ~~~~~~~~~~~f~~--------------~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kicl 222 (1311)
T KOG1900|consen 157 SFDEFTGELSIFNT--------------SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICL 222 (1311)
T ss_pred EeccccCccccccc--------------ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccC
Confidence 221 1111111111 123333 44444444 77788877776541 12222111
Q ss_pred -----CCCCCeeeccc-cCCCcEEEEEecCCce--eeeecCCeEEEecCCCCCCCC
Q 002748 565 -----DGKLPNRVEGK-LSKSFVEEIACGSYHV--AVLTSKTEVYTWGKGANGRLG 612 (885)
Q Consensus 565 -----~~~~p~~v~~~-l~~~~I~~Ia~G~~Ht--~aLt~~G~Vy~WG~n~~GQLG 612 (885)
....|.....+ ...+.|.+|+.+.... .++++.|.|=+|=-+.+|+-+
T Consensus 223 t~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 223 TKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred chhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 11245533322 2355799999998775 567788988888666666544
No 154
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.00 E-value=1.5e+03 Score=29.41 Aligned_cols=203 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCcEEEEeecCcE--EEEEEcCCcEEEEcCCCCCCcccCCCCCcceeeee---eecCCCCCceEEEEeeCCceEEEEecC
Q 002748 355 NMNIELVACGEYH--TCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPK---RVNGPLEGIHVSSISCGPWHTAVVTSA 429 (885)
Q Consensus 355 ~~~I~~Va~G~~h--s~aLt~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~---~v~~~l~~~~Iv~IacG~~ht~aLt~~ 429 (885)
...|.+|+.+..+ .++++.+|.|+.|-..................... ..........+.+++.-..+.+++..+
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Q ss_pred CeEEEeecCCCcccCCCCCcccccceeeeccCCCeEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeCCCCCCCCC
Q 002748 430 GQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGH 509 (885)
Q Consensus 430 G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~alte~~~~~s~~~~~~~G~vy~WG~n~~GQLG~ 509 (885)
.. -..+..-.+...+.........+....+.-.....+...+.+++-. .+|++| ++-.
T Consensus 506 ~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-----------~~G~v~--------~~~~ 563 (928)
T PF04762_consen 506 SD---SNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQT-----------NDGKVF--------QLSS 563 (928)
T ss_pred cC---cccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEE-----------CCCEEE--------Eeec
Q ss_pred CCCCceeecEEeeccCCCCeEEEEecCC---EEEEEecCCeEEEEeCCCCCcCCCCCCCCCCCeeeccccCCCcEEEEEe
Q 002748 510 GDKEAKLVPTCVAALVEPNFCRVACGHS---LTVALTTSGHVYTMGSPVYGQLGNPQADGKLPNRVEGKLSKSFVEEIAC 586 (885)
Q Consensus 510 g~~~~~~~P~~V~~l~~~~I~~Ia~G~~---ht~aLt~dG~Vy~wG~N~~GQLG~~~~~~~~p~~v~~~l~~~~I~~Ia~ 586 (885)
....... .+.+.+...--.....+.. +.+.|+.+|++|+=+ .+-...+..+..
T Consensus 564 ~~~~~~~--~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~n~----------------------~~la~~~tSF~v 619 (928)
T PF04762_consen 564 DGELSQI--VKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYANS----------------------RLLASNCTSFAV 619 (928)
T ss_pred CCCcccc--ccCCCCCcEEEEEEECCccceeEEEEECCCCEEEECC----------------------EEEecCCceEEE
Q ss_pred cCCceeeeecCCeEEEe
Q 002748 587 GSYHVAVLTSKTEVYTW 603 (885)
Q Consensus 587 G~~Ht~aLt~~G~Vy~W 603 (885)
...|-++.|..-.+...
T Consensus 620 ~~~~Ll~TT~~h~l~fv 636 (928)
T PF04762_consen 620 TDSFLLFTTTQHTLKFV 636 (928)
T ss_pred EcCEEEEEecCceEEEE
No 155
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=26.75 E-value=1.3e+03 Score=28.79 Aligned_cols=120 Identities=12% Similarity=0.111 Sum_probs=68.3
Q ss_pred EEEEEecCCe--EEEEEcCCcEEEEeCCCCCCcCCCCCCCc-cccEEeeccCCCcEEEEeecCcEEEEEE--cCCcEEEE
Q 002748 306 VQNIACGGRH--AALVNKQGEVFSWGEESGGRLGHGVDSDV-LHPKLIDALSNMNIELVACGEYHTCAVT--LSGDLYTW 380 (885)
Q Consensus 306 I~~Ia~G~~h--s~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~-~~P~~V~~l~~~~I~~Va~G~~hs~aLt--~dG~Vy~w 380 (885)
|.+++.|..- ++.+...|.=.++|...-|||+.-.-... ...++-..+ ..|..++-..+-.++.| +||+|-.|
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEE
Confidence 5555555443 45556668877888777777765432211 111111111 13445554444334443 68888888
Q ss_pred cCCCCCCcccCCCCCcceeeeeeecCCCCCceEEEEeeCCceEEEEecCCeEEEeecCCC
Q 002748 381 GDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTF 440 (885)
Q Consensus 381 G~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~ 440 (885)
-... | +--.....+..+...++++.-.+..+...-||.|-.|-...|
T Consensus 378 n~~S---g----------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 378 NTQS---G----------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccC---c----------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 6552 1 111222333446667778887778888888999999976554
No 156
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=26.22 E-value=1.1e+03 Score=27.39 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=19.0
Q ss_pred CcEEEEEec--CCceeeeecCCeEEEe
Q 002748 579 SFVEEIACG--SYHVAVLTSKTEVYTW 603 (885)
Q Consensus 579 ~~I~~Ia~G--~~Ht~aLt~~G~Vy~W 603 (885)
..+.+|+.. +.+.++++.+|.+|..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 457777766 4567888999999886
No 157
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=26.06 E-value=1.6e+03 Score=29.34 Aligned_cols=115 Identities=10% Similarity=-0.040 Sum_probs=58.0
Q ss_pred CeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEeeccCCCcEEEE--eecCcEEEEEEcCCcEEEEcCCCCCCcccC
Q 002748 314 RHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELV--ACGEYHTCAVTLSGDLYTWGDGTYNFGLLG 391 (885)
Q Consensus 314 ~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~V--a~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG 391 (885)
.-.++||++|-+-.--...+..-+.+ +.-+..-.+..+..+ +....+.+++|+.|++|..=-. .+.
T Consensus 517 ~v~v~lS~~GyIKr~~~~~~~~q~~g-------~~~~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy-----~IP 584 (957)
T PRK13979 517 DVVITLSNEGFIKRIPLKSYNRSNSN-------VEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGI-----NIP 584 (957)
T ss_pred ceEEEEecCCEEEEcccccccccccc-------ccccccCCCCceEEEEEEcCCCEEEEEECCCeEEEEEee-----eCC
Confidence 34567888886655433333221221 011111122234443 4456678889999999986322 222
Q ss_pred CCCCcceeee--eeec-CCCCCceEEEEeeCC-----ceEEEEecCCeEEEeecCCC
Q 002748 392 HGNEVSHWVP--KRVN-GPLEGIHVSSISCGP-----WHTAVVTSAGQLFTFGDGTF 440 (885)
Q Consensus 392 ~g~~~~~~~P--~~v~-~~l~~~~Iv~IacG~-----~ht~aLt~~G~Vy~wG~n~~ 440 (885)
.+.....-.| ..+. ..+++++|+.+.+-. .+.+++|.+|.+.-.-...|
T Consensus 585 e~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef 641 (957)
T PRK13979 585 EFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKF 641 (957)
T ss_pred CCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhc
Confidence 1111111111 1111 111367788776653 24688999999987754433
No 158
>PHA02790 Kelch-like protein; Provisional
Probab=25.96 E-value=4.5e+02 Score=31.10 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=11.3
Q ss_pred EEEEcCCcEEEEcCC
Q 002748 369 CAVTLSGDLYTWGDG 383 (885)
Q Consensus 369 ~aLt~dG~Vy~wG~n 383 (885)
.+..-+|+||..|..
T Consensus 357 ~~~~~~g~IYviGG~ 371 (480)
T PHA02790 357 AVASINNVIYVIGGH 371 (480)
T ss_pred EEEEECCEEEEecCc
Confidence 444568999999864
No 159
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.63 E-value=25 Score=41.05 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=36.1
Q ss_pred ccCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHhhhcc
Q 002748 657 QSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRK 718 (885)
Q Consensus 657 ~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~l~~ 718 (885)
...|+.|-.++..-.+ -+||.+||..|-=...... ..+..+-|.-|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~-----t~CGHiFC~~CiLqy~~~s-----~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVR-----TNCGHIFCGPCILQYWNYS-----AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccc-----cccCceeeHHHHHHHHhhh-----cccCCccCCchhhhccc
Confidence 4579999888762222 2599999999954432222 23667889999999866
No 160
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.59 E-value=36 Score=31.83 Aligned_cols=26 Identities=27% Similarity=0.769 Sum_probs=12.7
Q ss_pred CccccccCCCccccccccccccccee
Q 002748 659 MCSGCRLPFNNFKRKRHNCYNCGLVF 684 (885)
Q Consensus 659 ~C~~C~~~F~~f~rkrh~C~~CG~v~ 684 (885)
.|..|+..|-=+.+.--.|..||..|
T Consensus 11 ~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 11 TCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred cCCCCcchhccCCCCCccCCCCCCcc
Confidence 45555555543444334455555444
No 161
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=25.13 E-value=1.4e+03 Score=28.60 Aligned_cols=121 Identities=24% Similarity=0.267 Sum_probs=57.5
Q ss_pred CCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceeec-ccCCCCEEEEEec--CCeEEEEEcCCcEEE------E
Q 002748 258 DALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALE-SAVVLDVQNIACG--GRHAALVNKQGEVFS------W 328 (885)
Q Consensus 258 ~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~-~~~~~~I~~Ia~G--~~hs~~Lt~dG~Vy~------w 328 (885)
..++++|+|=.+. ...+-..-................+.+. ....+.|.+|... +.|.+++-..| |+. |
T Consensus 39 ~~d~~L~vWd~~e-~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~ 116 (717)
T PF10168_consen 39 CRDGDLFVWDSSE-CCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRW 116 (717)
T ss_pred EeCCEEEEEECCC-CEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEEEEecccc
Confidence 3469999999888 4433321100000000001112222221 1234578888866 34444444444 332 7
Q ss_pred eCCCCCCcCCCCCCCccccEEeec---cCCCcEEEEe-----ecCcEEEEEEcCCcEEEE
Q 002748 329 GEESGGRLGHGVDSDVLHPKLIDA---LSNMNIELVA-----CGEYHTCAVTLSGDLYTW 380 (885)
Q Consensus 329 G~N~~GqLG~g~~~~~~~P~~V~~---l~~~~I~~Va-----~G~~hs~aLt~dG~Vy~w 380 (885)
|.+.+-+.|.....=...|.--.. -....|++|. ..+.|.++||.|+.+-.+
T Consensus 117 g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y 176 (717)
T PF10168_consen 117 GKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLY 176 (717)
T ss_pred CccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEE
Confidence 766443333322111111211111 1234677774 457999999999975444
No 162
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=24.34 E-value=1.4e+02 Score=20.85 Aligned_cols=25 Identities=36% Similarity=0.283 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCceeeeecCCeEEE
Q 002748 578 KSFVEEIACGSYHVAVLTSKTEVYT 602 (885)
Q Consensus 578 ~~~I~~Ia~G~~Ht~aLt~~G~Vy~ 602 (885)
++.|+.|++|....++.|+.+-|-.
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3679999999999999999886644
No 163
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=24.26 E-value=1.6e+02 Score=20.48 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=20.4
Q ss_pred CceEEEEeeCCceEEEEecCCeEE
Q 002748 410 GIHVSSISCGPWHTAVVTSAGQLF 433 (885)
Q Consensus 410 ~~~Iv~IacG~~ht~aLt~~G~Vy 433 (885)
++.|..|++|....++.|+.+-|=
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lR 24 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLR 24 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEE
Confidence 457999999999999999988653
No 164
>PRK05560 DNA gyrase subunit A; Validated
Probab=23.64 E-value=1.6e+03 Score=28.61 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=62.9
Q ss_pred EecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCcccc--EEeeccCCCcEEEEeecC-----cEEEEEEcCCcEEEEcC
Q 002748 310 ACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHP--KLIDALSNMNIELVACGE-----YHTCAVTLSGDLYTWGD 382 (885)
Q Consensus 310 a~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P--~~V~~l~~~~I~~Va~G~-----~hs~aLt~dG~Vy~wG~ 382 (885)
+....+.+++|+.|++|..-... +........-.| ..+....+.+|+.+.+-. ...+++|.+|.+.---.
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~---iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l 621 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYE---IPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSL 621 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhh---CcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEh
Confidence 34456689999999999986432 111110111111 123334556777776543 45788899997765433
Q ss_pred CCCCCcccCCCCCcceeeeeeecCCCCCceEEEEe--eCCceEEEEecCCeEEEeecCCC
Q 002748 383 GTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSIS--CGPWHTAVVTSAGQLFTFGDGTF 440 (885)
Q Consensus 383 n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~Ia--cG~~ht~aLt~~G~Vy~wG~n~~ 440 (885)
..+....-+ +. ....+ -++..++.+. ....+.+++|+.|++|.+-....
T Consensus 622 ~~~~~~~r~-G~-----~~ikL---ke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eI 672 (805)
T PRK05560 622 SEFSNIRSN-GI-----IAINL---DEGDELIGVRLTDGDDDILLATKNGKAIRFPESDV 672 (805)
T ss_pred HHhhhcccC-Cc-----eeecc---CCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhc
Confidence 311100000 00 00011 1234455443 34456899999999999865443
No 165
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.29 E-value=44 Score=31.99 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=13.7
Q ss_pred CccccccCCCccccccccccccccee
Q 002748 659 MCSGCRLPFNNFKRKRHNCYNCGLVF 684 (885)
Q Consensus 659 ~C~~C~~~F~~f~rkrh~C~~CG~v~ 684 (885)
.|..|+..|-=+.+.--.|..||..+
T Consensus 11 ~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 11 ICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred cCCCcCccccccCCCCccCCCcCCcc
Confidence 46666666544444444555555443
No 166
>PRK00420 hypothetical protein; Validated
Probab=23.07 E-value=50 Score=31.10 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=15.4
Q ss_pred cCccccccCCCcccccccccccccce
Q 002748 658 SMCSGCRLPFNNFKRKRHNCYNCGLV 683 (885)
Q Consensus 658 s~C~~C~~~F~~f~rkrh~C~~CG~v 683 (885)
..|+-|+.+|.-+..++.-|.+||.+
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~~ 49 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHGKV 49 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCCCe
Confidence 57999998864234444445555443
No 167
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=22.98 E-value=26 Score=38.21 Aligned_cols=50 Identities=22% Similarity=0.681 Sum_probs=35.9
Q ss_pred cccCccccccCCCcccccccccccccceeeccCCCccccccccCCCCCCCcccchhhHhhhccccc
Q 002748 656 DQSMCSGCRLPFNNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTFD 721 (885)
Q Consensus 656 d~s~C~~C~~~F~~f~rkrh~C~~CG~v~C~~Css~~~~~~~~~~~~~~~~RVC~~C~~~l~~~~~ 721 (885)
....|..|+.+...|.|- .-|-.|||..|..-. +...|..|-+++++...
T Consensus 89 ~VHfCd~Cd~PI~IYGRm----IPCkHvFCl~CAr~~------------~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 89 RVHFCDRCDFPIAIYGRM----IPCKHVFCLECARSD------------SDKICPLCDDRVQRIEQ 138 (389)
T ss_pred ceEeecccCCcceeeecc----cccchhhhhhhhhcC------------ccccCcCcccHHHHHHH
Confidence 355688999987766654 678999999997543 24567777777666554
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=22.41 E-value=2.1e+02 Score=31.98 Aligned_cols=56 Identities=20% Similarity=0.382 Sum_probs=41.3
Q ss_pred cCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceeecccCCCCEEEEEecCC--eEEEEEcCCcEEEEeC
Q 002748 257 GDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGR--HAALVNKQGEVFSWGE 330 (885)
Q Consensus 257 l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~--hs~~Lt~dG~Vy~wG~ 330 (885)
....|+||+|--.. .++...|+...+..+..|+|.+.... ..++++++|.||.|-.
T Consensus 325 gnq~g~v~vwdL~~------------------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDN------------------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccCCCcEEEEECCC------------------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 46778999997644 23346777777777778998887754 5566789999999953
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=22.26 E-value=1e+03 Score=25.79 Aligned_cols=116 Identities=18% Similarity=0.150 Sum_probs=59.5
Q ss_pred cceecCCCCcEEEEcCCCCCCccCCCCCCCCccccccccCCCceeecccCCCCEEEEEecCCeEEEEEcCCcEEEEeCCC
Q 002748 253 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEES 332 (885)
Q Consensus 253 ~~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 332 (885)
...+-...|++.+.--+. |--+.. ...-..|..-+.....+|-.++.-+.|.+ ..-||+||.|-.|.
T Consensus 24 ~l~agn~~G~iav~sl~s----l~s~sa--------~~~gk~~iv~eqahdgpiy~~~f~d~~Ll-s~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKS----LDSGSA--------EPPGKLKIVPEQAHDGPIYYLAFHDDFLL-SGGDGLVYGWEWNE 90 (325)
T ss_pred EEEEecCCCeEEEEEehh----hhcccc--------CCCCCcceeeccccCCCeeeeeeehhhee-eccCceEEEeeehh
Confidence 345556667777666555 222211 11222222222333446777777666544 44569999999887
Q ss_pred CCC-cCCCCCCCccccEEeeccCCCcEE--EEeecCcEEEEEEcCCcEEEEc
Q 002748 333 GGR-LGHGVDSDVLHPKLIDALSNMNIE--LVACGEYHTCAVTLSGDLYTWG 381 (885)
Q Consensus 333 ~Gq-LG~g~~~~~~~P~~V~~l~~~~I~--~Va~G~~hs~aLt~dG~Vy~wG 381 (885)
.-. ++....-.+..|..+..++--.|. .+.-.++..++---||.+|+|-
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~d 142 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVD 142 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEE
Confidence 655 555544456667666533322222 2222333333333566666664
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=21.50 E-value=1.7e+02 Score=32.66 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=41.3
Q ss_pred EEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEeeccCCCcEEEEeecCcE--EEEEEcCCcEEEEcC
Q 002748 317 ALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYH--TCAVTLSGDLYTWGD 382 (885)
Q Consensus 317 ~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~h--s~aLt~dG~Vy~wG~ 382 (885)
++....|+||+|-... ..+...+++.....+..|.+.+....- .++++++|.||-|-.
T Consensus 323 a~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 4455789999998432 223366777777778889888776554 456688999999853
No 171
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=21.41 E-value=3e+02 Score=32.66 Aligned_cols=92 Identities=26% Similarity=0.343 Sum_probs=49.4
Q ss_pred cCCeEEEE-ecCCCceeEEEEEeCCCCeEEEecC---Cccee------EEccccceeeccccChhhhcCCCCCCCCcEEE
Q 002748 23 KGACLLKY-GRRGKPKFCPFRLSNDESVLIWFSG---KEEKH------LKLSHVSRIISGQRTPIFQRYPRPEKEYQSFS 92 (885)
Q Consensus 23 ~G~~l~K~-~~~~kp~~r~f~l~~d~~~l~W~~~---~~~~~------i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FS 92 (885)
.|..-+|- ++|+|.+. +|.|-.. -|.+.++ |..+. +.=++|--..-|+ .+-..+-+.||.
T Consensus 320 ~GfL~~K~dgkKsWKk~-yf~LR~S--GLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~r-------KkyksPTd~~f~ 389 (622)
T KOG3751|consen 320 QGFLYLKEDGKKSWKKH-YFVLRRS--GLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGR-------KKYKSPTDYGFC 389 (622)
T ss_pred cceeeecccccccceeE-EEEEecC--cceEccCCCCCCchhhHHHHhcccCceEEeecch-------hccCCCCCceEE
Confidence 46666666 77787544 4556554 2444332 11222 2222332222222 122344566777
Q ss_pred EEEc-----CceeE-EEeCCHHHHHHHHHHHHHHHHcc
Q 002748 93 LIYN-----DRSLD-LICKDKDEAEVWFSGLKALISRS 124 (885)
Q Consensus 93 ii~~-----~rtLd-Lva~~~~e~~~Wv~gL~~Li~~~ 124 (885)
|--. .|.|- |.|+|+..+..|+++||-+--..
T Consensus 390 ~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~KyG~ 427 (622)
T KOG3751|consen 390 IKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKYGM 427 (622)
T ss_pred eeeccccCcccceeeeecccchhHHHHHHHHHHHHHHH
Confidence 6662 16676 55677888999999998765443
No 172
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=21.37 E-value=7.6e+02 Score=27.26 Aligned_cols=140 Identities=22% Similarity=0.273 Sum_probs=72.9
Q ss_pred ecCcEEEEEEcCCcEEEEcCCCCCCcccCCCCCcceeeeeeecCCCCCceEEEEeeC---CceEEEEecCCeEEEeecC-
Q 002748 363 CGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCG---PWHTAVVTSAGQLFTFGDG- 438 (885)
Q Consensus 363 ~G~~hs~aLt~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~IacG---~~ht~aLt~~G~Vy~wG~n- 438 (885)
.+.-|-++...||.||.-+... +.+|+-+... -+++.+..| .-|.+++..||..|..-.+
T Consensus 61 G~ap~dvapapdG~VWft~qg~---gaiGhLdP~t-------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~ 124 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGT---GAIGHLDPAT-------------GEVETYPLGSGASPHGIVVGPDGSAWITDTGL 124 (353)
T ss_pred CCCccccccCCCCceEEecCcc---ccceecCCCC-------------CceEEEecCCCCCCceEEECCCCCeeEecCcc
Confidence 3456778888999999877663 4555543322 123333322 2477888888888877433
Q ss_pred CCcccCCCCCcccccceeeeccCCCeEEEEEeCCceEEEEEEeeecCCCccccCCCcEEEEeCC-CCCCCCCCCCCceee
Q 002748 439 TFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDG-DKGRLGHGDKEAKLV 517 (885)
Q Consensus 439 ~~GQLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~alte~~~~~s~~~~~~~G~vy~WG~n-~~GQLG~g~~~~~~~ 517 (885)
..+.++..+......|.. .+-+-+.-.++++. ..|.||.-|.+ .+|+|--........
T Consensus 125 aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD------------~~G~lWFt~q~G~yGrLdPa~~~i~vf 183 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLP---------LEHADANLETAVFD------------PWGNLWFTGQIGAYGRLDPARNVISVF 183 (353)
T ss_pred eeEEecCcccceEEeecc---------cccCCCcccceeeC------------CCccEEEeeccccceecCcccCceeee
Confidence 222222211111111111 11122233344444 68999999873 445443322211111
Q ss_pred cEEeeccCCCCeEEEEecCCEEEEEecCCeEEEE
Q 002748 518 PTCVAALVEPNFCRVACGHSLTVALTTSGHVYTM 551 (885)
Q Consensus 518 P~~V~~l~~~~I~~Ia~G~~ht~aLt~dG~Vy~w 551 (885)
|.. ..+.-.-++.|-||+||.-
T Consensus 184 paP------------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 184 PAP------------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred ccC------------CCCCCcceEECCCCcEEEE
Confidence 111 1234457888999999976
No 173
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=21.31 E-value=88 Score=23.33 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=15.7
Q ss_pred CEEEEEecCCeEEEEeCCC
Q 002748 537 SLTVALTTSGHVYTMGSPV 555 (885)
Q Consensus 537 ~ht~aLt~dG~Vy~wG~N~ 555 (885)
.+.++++.+|+||+.|...
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3578999999999999643
No 174
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=21.14 E-value=1.5e+02 Score=36.25 Aligned_cols=103 Identities=25% Similarity=0.340 Sum_probs=59.4
Q ss_pred EEecCCeEEEEEcCCcEEEEeCCCCCCcCCCCCCCccccEEeeccCCCcEEEEeecCcEEEEEEcCCc-EEEEcCCCCCC
Q 002748 309 IACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGD-LYTWGDGTYNF 387 (885)
Q Consensus 309 Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLt~dG~-Vy~wG~n~~~~ 387 (885)
++.|..|-+++. ||.|-.|..+.- ..| ..+|..|+..+.-++++|.-.. |-.|=-
T Consensus 138 vSVGsQHDMIVn----v~dWr~N~~~as-----------nki----ss~Vsav~fsEdgSYfvT~gnrHvk~wyl----- 193 (1080)
T KOG1408|consen 138 VSVGSQHDMIVN----VNDWRVNSSGAS-----------NKI----SSVVSAVAFSEDGSYFVTSGNRHVKLWYL----- 193 (1080)
T ss_pred EeeccccceEEE----hhhhhhcccccc-----------ccc----ceeEEEEEEccCCceeeeeeeeeEEEEEe-----
Confidence 567888888885 888987764421 111 1256677777777777775442 333311
Q ss_pred cccCCCCCcceeeeee--ecCCCCCceEEEEeeCCc----eEEEEecCCeEEEee
Q 002748 388 GLLGHGNEVSHWVPKR--VNGPLEGIHVSSISCGPW----HTAVVTSAGQLFTFG 436 (885)
Q Consensus 388 GqLG~g~~~~~~~P~~--v~~~l~~~~Iv~IacG~~----ht~aLt~~G~Vy~wG 436 (885)
+.+.........|-+ +.+.+....+..|+||.. .+++||..|.|.-|-
T Consensus 194 -~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 194 -QIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred -eccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeec
Confidence 111111111112211 122233446888999987 899999988877664
No 175
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=20.93 E-value=18 Score=36.11 Aligned_cols=28 Identities=32% Similarity=0.612 Sum_probs=24.7
Q ss_pred eEEEeCCHHHHHHHHHHHHHHHHccccc
Q 002748 100 LDLICKDKDEAEVWFSGLKALISRSHHR 127 (885)
Q Consensus 100 LdLva~~~~e~~~Wv~gL~~Li~~~~~~ 127 (885)
++|++...+|+..|..||+.||...+.-
T Consensus 114 ~~L~t~h~~E~~~WmvGVKRLI~~~r~~ 141 (157)
T PF07304_consen 114 VDLMTDHVDECGNWMVGVKRLIAMARNL 141 (157)
T ss_dssp HHHHHSSHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHhhhHHHHHHHHHHHHHhc
Confidence 4688889999999999999999998853
No 176
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.91 E-value=1.3e+03 Score=26.71 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=33.8
Q ss_pred CcEEEEeecCcEEEEEE--cCCcEEEEcCCCCCCcccCCCCCcceeeeeeecCCCCCc-eEEEEeeCCceEEEE--ecCC
Q 002748 356 MNIELVACGEYHTCAVT--LSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGI-HVSSISCGPWHTAVV--TSAG 430 (885)
Q Consensus 356 ~~I~~Va~G~~hs~aLt--~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~-~Iv~IacG~~ht~aL--t~~G 430 (885)
..|..++...+.-+||. .+.++..|-.-.. ..+.+..+.-.+. -|.+-..|.+-.++. ++|+
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-------------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~ 462 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLEEN-------------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS 462 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecchh-------------hHHHHhhcccccceEEEeccCCCCcceEEecCCCc
Confidence 35666555444444443 4667888853311 1111212211121 244444455545544 5889
Q ss_pred eEEEee
Q 002748 431 QLFTFG 436 (885)
Q Consensus 431 ~Vy~wG 436 (885)
+||.|-
T Consensus 463 kvyIWh 468 (519)
T KOG0293|consen 463 KVYIWH 468 (519)
T ss_pred eEEEEE
Confidence 999995
No 177
>PF15411 PH_10: Pleckstrin homology domain
Probab=20.79 E-value=1.3e+02 Score=28.54 Aligned_cols=48 Identities=19% Similarity=0.427 Sum_probs=29.8
Q ss_pred eeEEccccceeeccccChhhhcCCCCCCCCcEEEEEEc-C---ceeEEEeCCHHHHHHHHHHH
Q 002748 59 KHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYN-D---RSLDLICKDKDEAEVWFSGL 117 (885)
Q Consensus 59 ~~i~l~~I~eVr~G~~t~~f~~~~~~~~~~~~FSii~~-~---rtLdLva~~~~e~~~Wv~gL 117 (885)
..|.|+.|.+|..=.. ....+..|-.. + .+.-|-++++++++.|-..|
T Consensus 65 GrI~i~~i~~v~~~s~-----------~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 65 GRIYISNITEVSSSSK-----------PGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred eEEEEEeeeeeeccCC-----------CCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 3477777776664332 22344444442 2 55667777999999998764
No 178
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=20.71 E-value=31 Score=34.11 Aligned_cols=39 Identities=26% Similarity=0.466 Sum_probs=29.4
Q ss_pred EEEEEcCCCccceeeeecccccccccCccccccCCCccc
Q 002748 633 VKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNNFK 671 (885)
Q Consensus 633 V~~IacG~~hT~al~~~kwvs~~d~s~C~~C~~~F~~f~ 671 (885)
|.-=-||+.+|-.+..-..........|..|..+|..|+
T Consensus 106 ~~cp~c~s~~t~~~s~fg~t~cka~~~c~~c~epf~~fk 144 (146)
T TIGR02159 106 VQCPRCGSADTTITSIFGPTACKALYRCRACKEPFEYFK 144 (146)
T ss_pred CcCCCCCCCCcEeecCCCChhhHHHhhhhhhCCcHhhcc
Confidence 444568999999887665555567778999999998665
No 179
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=20.28 E-value=59 Score=26.02 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=16.0
Q ss_pred CccccccCCCccccccccccccccee
Q 002748 659 MCSGCRLPFNNFKRKRHNCYNCGLVF 684 (885)
Q Consensus 659 ~C~~C~~~F~~f~rkrh~C~~CG~v~ 684 (885)
.|+.|+..|-.....|.+|..||...
T Consensus 22 fCP~Cg~~~m~~~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 22 FCPRCGSGFMAEHLDRWHCGKCGYTE 47 (50)
T ss_pred cCcCCCcchheccCCcEECCCcCCEE
Confidence 57777664433444577777777654
No 180
>smart00340 HALZ homeobox associated leucin zipper.
Probab=20.21 E-value=1.1e+02 Score=23.60 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=11.1
Q ss_pred hhhHHhhHHHHHHHHHHHH
Q 002748 861 DDAKRTNDSLSQEVIKLRA 879 (885)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~ 879 (885)
+.|...|.-|..||+.||+
T Consensus 15 e~LteeNrRL~ke~~eLra 33 (44)
T smart00340 15 ESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666665
Done!