Query 002748
Match_columns 885
No_of_seqs 538 out of 2960
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 17:31:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002748.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1464-1468//hhsearch_pdb/002748hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 1.0 1 1 572.1 37.0 372 253-650 12-388 (389)
2 4d9s_A UVB-resistance protein 1.0 1 1 557.9 41.0 359 246-630 19-380 (406)
3 3of7_A Regulator of chromosome 1.0 1 1 547.3 41.3 372 253-650 21-451 (473)
4 1a12_A RCC1, regulator of chro 1.0 1 1 541.3 44.1 367 252-651 18-411 (413)
5 3mvd_K Regulator of chromosome 1.0 1 1 541.0 44.5 369 248-650 29-419 (423)
6 4d9s_A UVB-resistance protein 1.0 1 1 516.9 42.2 332 303-650 15-348 (406)
7 3kci_A Probable E3 ubiquitin-p 1.0 1 1 487.9 32.1 324 309-648 6-334 (389)
8 3mvd_K Regulator of chromosome 1.0 1 1 472.4 31.4 326 303-652 23-367 (423)
9 3of7_A Regulator of chromosome 1.0 1 1 470.6 25.8 323 253-596 78-449 (473)
10 1a12_A RCC1, regulator of chro 1.0 1 1 465.4 35.4 335 237-599 53-411 (413)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=572.07 Aligned_cols=372 Identities=36% Similarity=0.636 Sum_probs=344.5
Q ss_pred CCEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCC
Q ss_conf 52001889939998499999734898887773356555677845623467898899995587699998399199983899
Q 002748 253 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEES 332 (885)
Q Consensus 253 ~~~~~~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~hs~~Lt~~G~Vy~wG~n~ 332 (885)
.+.+++++|+||+||.|. +||||.++ ..+...|.+++.+...+|++|+||..|+++|+++|+||+||.|.
T Consensus 12 ~~~~l~~~G~v~~wG~n~-~GqLG~~~---------~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~ 81 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNH-RGQLGGIE---------GAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGA 81 (389)
T ss_dssp ---------CEEEEEECT-TSTTSSCS---------CSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred CCEEECCCCEEEEEECCC-CCCCCCCC---------CCCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECCC
T ss_conf 226688998699703899-75189896---------86642777601346786599984777399995898199988999
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCE--EEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 99757889977334478402689857--9995069589999839949999488999865689998414422465489999
Q 002748 333 GGRLGHGVDSDVLHPKLIDALSNMNI--ELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEG 410 (885)
Q Consensus 333 ~GqLG~g~~~~~~~P~~V~~l~~~~V--~~Ia~G~~ht~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~ 410 (885)
+||||++...+...|.+++.+....+ ++|+||.+|++||+++|+||+||.| .+||||+++......|.++.. +.+
T Consensus 82 ~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-l~~ 158 (389)
T 3kci_A 82 GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIES-LRG 158 (389)
T ss_dssp GGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC--GGGTTCSSSCCCEEEEEECGG-GTT
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCCCCCCCCCCCCCCCEEECC-CCC
T ss_conf 98889899677337777110157732599987687749999489979997299--898678998756758768436-689
Q ss_pred CEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECC--CEEEEEEEEEECCCCC
Q ss_conf 50899763896379991498099820699864588998530136354115897299997178--6589999953158876
Q 002748 411 IHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGV--WHTAAVVEVMVGNSSS 488 (885)
Q Consensus 411 ~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~--~ht~ai~e~~~~~~~~ 488 (885)
.+|++|+||..|+++|+++|+||+||.|.+||||+++......|+++..+.+.+|++|+||. +|+++++
T Consensus 159 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~--------- 229 (389)
T 3kci_A 159 IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT--------- 229 (389)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE---------
T ss_pred CEEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEC---------
T ss_conf 73999971758589994898089948998887689998660455685045898399999768985899990---------
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCEEECEEEECCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCC-C
Q ss_conf 426899399993799998789998751321895104799837997329789999559909999099988679999999-8
Q 002748 489 SNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADG-K 567 (885)
Q Consensus 489 ~~~~~G~ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~~tiaLt~dG~Vy~wG~N~~GQLG~~~~~~-~ 567 (885)
.+|+||+||.|.+||||.++......|++|..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.... .
T Consensus 230 ---~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 306 (389)
T 3kci_A 230 ---DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR 306 (389)
T ss_dssp ---TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred ---CCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf ---59979997399888779899888544679546689967999479987999958993999858999888899986620
Q ss_pred CCEEECCCCCCCCEEEEEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCEEE
Q ss_conf 77021145678867999966880056606986999618999978999999987677952137982899973898321054
Q 002748 568 LPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKDKQVKSIACGTNFTAAIC 647 (885)
Q Consensus 568 ~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~V~~IacG~~hT~ai~ 647 (885)
.|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|+.+.+.+|..|+||.+||++|+
T Consensus 307 ~P~~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~ 385 (389)
T 3kci_A 307 RPRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWS 385 (389)
T ss_dssp EEEECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEEC
T ss_pred CCEEECC-CCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCEEEEE
T ss_conf 8758514-799988999944570999989998998038998868898987746767911358998799996678289994
Q ss_pred EEC
Q ss_conf 210
Q 002748 648 LHK 650 (885)
Q Consensus 648 ~~k 650 (885)
..+
T Consensus 386 ~~~ 388 (389)
T 3kci_A 386 TSK 388 (389)
T ss_dssp C--
T ss_pred CCC
T ss_conf 699
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=557.86 Aligned_cols=359 Identities=36% Similarity=0.633 Sum_probs=331.4
Q ss_pred CCCCCCC-CCEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCC-
Q ss_conf 3257788-52001889939998499999734898887773356555677845623467898899995587699998399-
Q 002748 246 SSSSQGS-GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQG- 323 (885)
Q Consensus 246 s~~s~G~-~~~~~~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~hs~~Lt~~G- 323 (885)
..+++|. +.++++++|.||+||.|. +||||+++ ..+...|.++..+...+|++|+||..|+++|+++|
T Consensus 19 ~~ia~G~~hs~al~~~g~v~~wG~n~-~GqLG~g~---------~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg 88 (406)
T 4d9s_A 19 LIISAGASHSVALLSGDIVCSWGRGE-DGQLGHGD---------AEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGM 88 (406)
T ss_dssp EEEEECSSEEEEEETTTEEEEEECCT-TSTTCSSS---------CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTT
T ss_pred EEEECCCCEEEEEEECCEEEEEECCC-CCCCCCCC---------CCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCC
T ss_conf 99961879099998299899986999-98889798---------655738878224689978999828450899988899
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 19998389999757889977334478402689857999506958999983994999948899986568999841442246
Q 002748 324 EVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKR 403 (885)
Q Consensus 324 ~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~V~~Ia~G~~ht~aLT~dG~Vy~wG~n~~~~GqLG~g~~~~~~~P~~ 403 (885)
+||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|++||+++|+||+||.| ..||||.+.......|.+
T Consensus 89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~ 166 (406)
T 4d9s_A 89 EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN--QNGQLGLGDTEDSLVPQK 166 (406)
T ss_dssp EEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSSSCCCEEEEEE
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECHHHEEEECCCCCEEEECCC--CCCCCCCCCCCCCCCCEE
T ss_conf 899975998868998998764610684146899889999770465897389859990799--875477989877552357
Q ss_pred ECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCEEEEEEEEEE
Q ss_conf 54899995089976389637999149809982069986458899853013635411589729999717865899999531
Q 002748 404 VNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMV 483 (885)
Q Consensus 404 v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~ai~e~~~ 483 (885)
+.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|.++..+.+.+|++|+||.+|+++|+
T Consensus 167 v~~-~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~---- 241 (406)
T 4d9s_A 167 IQA-FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS---- 241 (406)
T ss_dssp CGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEE----
T ss_pred ECC-CCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEEEC----
T ss_conf 435-689738999647873999947998898417988877889987768627840368962999997898189994----
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECEEEECCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 58876426899399993799998789998751321895104799837997329789999559909999099988679999
Q 002748 484 GNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQ 563 (885)
Q Consensus 484 ~~~~~~~~~~G~ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~~tiaLt~dG~Vy~wG~N~~GQLG~~~ 563 (885)
.+|+||+||.|.+||||+++......|+++..+.+..|++|+||.+|++||+++|+||+||.|.+||||.+.
T Consensus 242 --------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~ 313 (406)
T 4d9s_A 242 --------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 313 (406)
T ss_dssp --------TTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred --------CCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCC
T ss_conf --------899889963899887899987675056782325899889998467879999599909993389988887899
Q ss_pred CCC-CCCEEECCCCCCCCEEEEEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 999-8770211456788679999668800566069869996189999789999999876779521379
Q 002748 564 ADG-KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEALKD 630 (885)
Q Consensus 564 ~~~-~~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~ 630 (885)
... ..|..+.. +....|++|+||.+|+++|+++|+||+||.|.+||||+|+..++..|++|+.+..
T Consensus 314 ~~~~~~p~~v~~-~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~ 380 (406)
T 4d9s_A 314 NLDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSV 380 (406)
T ss_dssp SSCEEEEEEECC-GGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCS
T ss_pred CCCCCCCEEEEC-CCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 877746779732-6798589999289949999489978996599888668999877738878500267
No 3
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=547.31 Aligned_cols=372 Identities=23% Similarity=0.395 Sum_probs=318.0
Q ss_pred CCEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCEEEEEECCCEEEEEECCCCEEEEEC
Q ss_conf 5200188993999849999973489888777335655567784562346--78988999955876999983991999838
Q 002748 253 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESA--VVLDVQNIACGGRHAALVNKQGEVFSWGE 330 (885)
Q Consensus 253 ~~~~~~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~--~~~~V~~Ia~G~~hs~~Lt~~G~Vy~wG~ 330 (885)
+.++++.+|+||+||.|. .||||+|+.. ...+...|+.++.+ ...+|++|+||..|+++|+++|+||+||.
T Consensus 21 h~~~~~~~g~v~~wG~n~-~GqLG~G~~~------~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~ 93 (473)
T 3of7_A 21 HMYLSVQPLDIFCWGTGS-MCELGLGPLA------KNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGC 93 (473)
T ss_dssp HHHCCSSCCEEEEEEECT-TSTTCSCSCG------GGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CCCCCCCCCCEEEECCCC-CCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEEC
T ss_conf 102678876589981898-8736989776------664455762155455577878999707876999916984999689
Q ss_pred CCCCCCCCCCCCC-----------------------CCCCEEEEC--C----CCCCEEEEEECCCEEEEEECCCCEEEEC
Q ss_conf 9999757889977-----------------------334478402--6----8985799950695899998399499994
Q 002748 331 ESGGRLGHGVDSD-----------------------VLHPKLIDA--L----SNMNIELVACGEYHTCAVTLSGDLYTWG 381 (885)
Q Consensus 331 n~~GqLG~g~~~~-----------------------~~~P~~V~~--l----~~~~V~~Ia~G~~ht~aLT~dG~Vy~wG 381 (885)
|.+||||++.... ...|.+|.. + .+.+|++|+||.+|++||+++|+||+||
T Consensus 94 n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG 173 (473)
T 3of7_A 94 NDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWG 173 (473)
T ss_dssp CTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 98888999886533332345655567543344463346750134345775458981899982688799994898499946
Q ss_pred CCCCCCCCCCCCCC--CCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCC----CCCCE
Q ss_conf 88999865689998--4144224654899995089976389637999149809982069986458899853----01363
Q 002748 382 DGTYNFGLLGHGNE--VSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKS----VSIPR 455 (885)
Q Consensus 382 ~n~~~~GqLG~g~~--~~~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GqLG~g~~~~----~~~P~ 455 (885)
.|....||||.+.. .....|.+|.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||++.... ...|.
T Consensus 174 ~n~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~ 252 (473)
T 3of7_A 174 TFRCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPR 252 (473)
T ss_dssp CEEETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCC-CCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 996898754888877741447677552-4788879999637838999179929997699888889884454333543752
Q ss_pred EEECCCCCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCC----CEEECEEEECCCCCCEEE
Q ss_conf 5411589729999717865899999531588764268993999937999987899987----513218951047998379
Q 002748 456 EVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE----AKLVPTCVAALVEPNFCR 531 (885)
Q Consensus 456 ~V~~l~~~~I~~VacG~~ht~ai~e~~~~~~~~~~~~~G~ly~WG~n~~GqLG~g~~~----~~~~P~~V~~l~~~~I~~ 531 (885)
.+.. .+|++|+||.+|++||+ .+|+||+||.|.+||||++... ....|++|..+.+.+|++
T Consensus 253 ~~~~---~~v~~Ia~G~~hs~alt------------~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ 317 (473)
T 3of7_A 253 PFGL---RHVKYIASGENHCFALT------------KDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRS 317 (473)
T ss_dssp ECSC---CSEEEEEECSSEEEEEE------------TTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEE
T ss_pred ECCC---CCEEEEECCCCEEEEEE------------CCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEE
T ss_conf 1277---66389954897589991------------69988993789898858887656884454132125567863899
Q ss_pred EEECCCEEEEEECCCEEEEEECCCCCCCCCCCCC----------C-----CCCEEECCCCCCCCEEEEEECCCCEEEEEC
Q ss_conf 9732978999955990999909998867999999----------9-----877021145678867999966880056606
Q 002748 532 VACGHSLTVALTTSGHVYTMGSPVYGQLGNPQAD----------G-----KLPNRVEGKLSKSFVEEIACGSYHVAVLTS 596 (885)
Q Consensus 532 Ia~G~~~tiaLt~dG~Vy~wG~N~~GQLG~~~~~----------~-----~~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~ 596 (885)
|+||.+|+++|+++|+||+||.|.+||||.+... . ..|..+... ..|++|+||.+|++||++
T Consensus 318 ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~---~~v~~Ia~G~~hs~al~~ 394 (473)
T 3of7_A 318 IAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV---PKFKSVAAGSHHSVAVAQ 394 (473)
T ss_dssp EEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS---CCEEEEEECSSEEEEEET
T ss_pred EEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC---CCEEEEEECCCEEEEEEC
T ss_conf 98678869999389829998789987418884446653100457860262167004787---753799857876999968
Q ss_pred CCEEEEECCCCCCCCCCCC-CCCCCCCEEEC--CCCCCCEEEEECCCCCCCEEEEEC
Q ss_conf 9869996189999789999-99987677952--137982899973898321054210
Q 002748 597 KTEVYTWGKGANGRLGHGD-TDDRNSPSLVE--ALKDKQVKSIACGTNFTAAICLHK 650 (885)
Q Consensus 597 ~G~Vy~WG~n~~GQLG~g~-~~~~~~P~~V~--~l~~~~V~~IacG~~hT~ai~~~k 650 (885)
+|+||+||.|.+||||+|+ ..+...|++|+ .+.+++|..|+||.+||+++..+.
T Consensus 395 ~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~~ 451 (473)
T 3of7_A 395 NGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVKL 451 (473)
T ss_dssp TSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEEC
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEEEEEEECC
T ss_conf 984899628989888799977656378482256668972899951888599997447
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=541.26 Aligned_cols=367 Identities=27% Similarity=0.485 Sum_probs=319.8
Q ss_pred CCCEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECC
Q ss_conf 85200188993999849999973489888777335655567784562346789889999558769999839919998389
Q 002748 252 SGHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVFSWGEE 331 (885)
Q Consensus 252 ~~~~~~~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~hs~~Lt~~G~Vy~wG~n 331 (885)
.+.++++.+|+||+||.|. .||||+|... .+...|+.+... .+|++|+||..|+++|+++|+||+||.|
T Consensus 18 ~h~~~l~~~g~v~~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n 86 (413)
T 1a12_A 18 SHRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCN 86 (413)
T ss_dssp CCTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CCCEEECCCCCEEEEECCC-CCCCCCCCCC--------CCCCCCEECCCC--CCEEEEEECCCEEEEECCCCCEEEEECC
T ss_conf 4204006898689977898-9837989986--------430465671688--9869998677758999479989998899
Q ss_pred CCCCCCCCCCC--CCCCCEEEECCCCCCEEEEEECCCEEEEEECCCCEEEECC--CCCCCCCCCCCCCCC-EEEEEEECC
Q ss_conf 99975788997--7334478402689857999506958999983994999948--899986568999841-442246548
Q 002748 332 SGGRLGHGVDS--DVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGD--GTYNFGLLGHGNEVS-HWVPKRVNG 406 (885)
Q Consensus 332 ~~GqLG~g~~~--~~~~P~~V~~l~~~~V~~Ia~G~~ht~aLT~dG~Vy~wG~--n~~~~GqLG~g~~~~-~~~P~~v~~ 406 (885)
.+||||++... ....|.+|.. ..+|++|+||.+|++||+++|+||+||. | .+||||.+.... ...|.++.
T Consensus 87 ~~GqLG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n--~~GqlG~~~~~~~~~~P~~v~- 161 (413)
T 1a12_A 87 DEGALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRD--NNGVIGLLEPMKKSMVPVQVQ- 161 (413)
T ss_dssp TTSTTCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEE--TTEEEESSBBTBCEEEEEEEC-
T ss_pred CCCCCCCCCCCCCCCCCCEEECC--CCCEEEEECCCCEEEEECCCCCEEEEECCCC--CCCCCCCCCCCCCCCCCEEEC-
T ss_conf 98877988888753458747538--8758999668873799848994899437768--998637678664466787961-
Q ss_pred CCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCC-----------CCCCCEEEECC-----CCCEEEEEEE
Q ss_conf 9999508997638963799914980998206998645889985-----------30136354115-----8972999971
Q 002748 407 PLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRK-----------SVSIPREVESL-----KGLRTVRAAC 470 (885)
Q Consensus 407 ~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GqLG~g~~~-----------~~~~P~~V~~l-----~~~~I~~Vac 470 (885)
...+|++|+||.+|+++|+++|+||+||.|.+||||++... ....|+.+... ...+|++|+|
T Consensus 162 --~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~ 239 (413)
T 1a12_A 162 --LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC 239 (413)
T ss_dssp --CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEE
T ss_pred --CCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEE
T ss_conf --899779998467618998589988983389888668875333455554553224467457631456667854899970
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECEEEECCCC--CCEEEEEECCCEEEEEECCCEE
Q ss_conf 78658999995315887642689939999379999878999875132189510479--9837997329789999559909
Q 002748 471 GVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVE--PNFCRVACGHSLTVALTTSGHV 548 (885)
Q Consensus 471 G~~ht~ai~e~~~~~~~~~~~~~G~ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~--~~I~~Ia~G~~~tiaLt~dG~V 548 (885)
|.+|+++|+ .+|+||+||.|.+||||+++......|+.|..+.+ ..|++|+||.+|+++|+++|+|
T Consensus 240 G~~hs~alt------------~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v 307 (413)
T 1a12_A 240 GAYFTFAIS------------HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKA 307 (413)
T ss_dssp ETTEEEEEE------------TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCE
T ss_pred CCCEEEEEE------------CCCCEEEEECCCCCCCCCCCCCCCCCCEECHHCCCCCCEEEEEECCCCEEEEEECCCCE
T ss_conf 788799996------------89979998499876777999876356677010158873299995052458999079989
Q ss_pred EEEECCCCCCCCCCCCC--CCCCEEECCCCCCCCEEEEEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 99909998867999999--9877021145678867999966880056606986999618999978999999987677952
Q 002748 549 YTMGSPVYGQLGNPQAD--GKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVE 626 (885)
Q Consensus 549 y~wG~N~~GQLG~~~~~--~~~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~ 626 (885)
|+||.|.+||||.+... ...|..|... ..|++|+||.+|+++|+++|+||+||.|.+||||+++..+...|++|.
T Consensus 308 ~~wG~n~~GqLG~g~~~~~~~~P~~v~~l---~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~ 384 (413)
T 1a12_A 308 YSLGRAEYGRLGLGEGAEEKSIPTLISRL---PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMM 384 (413)
T ss_dssp EEEECCGGGTTCSCTTCCCEEEEEECCSS---SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCC---CCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEECC
T ss_conf 98648988866899988636677792266---762599977564799948997899228989878799988755374854
Q ss_pred C--CCCCCEEEEECCCCCCCEEEEECC
Q ss_conf 1--379828999738983210542101
Q 002748 627 A--LKDKQVKSIACGTNFTAAICLHKW 651 (885)
Q Consensus 627 ~--l~~~~V~~IacG~~hT~ai~~~kw 651 (885)
. +.+.+|.+|+||.+||++|+.++.
T Consensus 385 ~~~~~~~~v~~v~~G~~ht~~l~~~g~ 411 (413)
T 1a12_A 385 GKQLENRVVLSVSSGGQHTVLLVKDKE 411 (413)
T ss_dssp STTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred CCCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 556589869999557882899981688
No 5
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=541.00 Aligned_cols=369 Identities=25% Similarity=0.404 Sum_probs=322.5
Q ss_pred CCCCC-CCEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEE
Q ss_conf 57788-52001889939998499999734898887773356555677845623467898899995587699998399199
Q 002748 248 SSQGS-GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRHAALVNKQGEVF 326 (885)
Q Consensus 248 ~s~G~-~~~~~~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~hs~~Lt~~G~Vy 326 (885)
.+.|. +..+++.+|+||+||.|. .||||.|.+. .+...|.+++.+. +|++|+||..|+++|+++|+||
T Consensus 29 ia~g~~~~~~l~~~G~v~~wG~n~-~GqLG~g~~~--------~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~ 97 (423)
T 3mvd_K 29 IAFHLELPKRRTVLGNVLVCGNGD-VGQLGLGEDI--------LERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIY 97 (423)
T ss_dssp CCCCCCCCCCCCCCEEEEEEEECT-TSTTCSCSSC--------CEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEE
T ss_pred EECCCCCCEEECCCCCEEEEECCC-CCCCCCCCCC--------CCCCCCEECCCCC--CCEEEEECCCEEEEEECCCEEE
T ss_conf 863776533166997199986998-7778999987--------5676876756889--8449950789489995799499
Q ss_pred EEECCCCCCCCCCCCCC--CCCCEEEECCCCCCEEEEEECCCEEEEEECCCCEEEECC--CCCCCCCCCCCCCCCEEEEE
Q ss_conf 98389999757889977--334478402689857999506958999983994999948--89998656899984144224
Q 002748 327 SWGEESGGRLGHGVDSD--VLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGD--GTYNFGLLGHGNEVSHWVPK 402 (885)
Q Consensus 327 ~wG~n~~GqLG~g~~~~--~~~P~~V~~l~~~~V~~Ia~G~~ht~aLT~dG~Vy~wG~--n~~~~GqLG~g~~~~~~~P~ 402 (885)
+||.|.+||||++...+ ...|.+|... .+|++|+||.+|++||+++|+||+||. | .+||||.+.......|.
T Consensus 98 ~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n--~~GqlG~~~~~~~~~p~ 173 (423)
T 3mvd_K 98 SFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRD--SHGNMGLTIDGNKRTPI 173 (423)
T ss_dssp EEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEEC--SSSEEESBTTBCEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCEEECCC--CCEEEEECCCCEEEEEECCCEEEEEECCCC--CCCCCCCCCCCCCCEEE
T ss_conf 86789985899987678656577597479--978999848682899917996999769889--89986747788872346
Q ss_pred EECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCC-----------CCCCCCEEEECCCCCEEEEEEEC
Q ss_conf 6548999950899763896379991498099820699864588998-----------53013635411589729999717
Q 002748 403 RVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDR-----------KSVSIPREVESLKGLRTVRAACG 471 (885)
Q Consensus 403 ~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GqLG~g~~-----------~~~~~P~~V~~l~~~~I~~VacG 471 (885)
++ +.+.+|++|+||.+|+++|+++|+||+||.|.+||||++.. .....|.++......+|..|+||
T Consensus 174 ~~---~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g 250 (423)
T 3mvd_K 174 DL---MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT 250 (423)
T ss_dssp ES---STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEE
T ss_pred EE---CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEC
T ss_conf 96---699858999538974999926980999627867854777643445433345333568768840688627999979
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCC--CEEECEEEECCCCCCEEEEEECCCEEEEEECCCEEE
Q ss_conf 865899999531588764268993999937999987899987--513218951047998379973297899995599099
Q 002748 472 VWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKE--AKLVPTCVAALVEPNFCRVACGHSLTVALTTSGHVY 549 (885)
Q Consensus 472 ~~ht~ai~e~~~~~~~~~~~~~G~ly~WG~n~~GqLG~g~~~--~~~~P~~V~~l~~~~I~~Ia~G~~~tiaLt~dG~Vy 549 (885)
.+|++++.. .+|+||+||.|.+||||.+... ....|..+. ..+|++|+||.+|++||+++|+||
T Consensus 251 ~~~~~~~~~-----------~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~ 316 (423)
T 3mvd_K 251 NYCTFMRES-----------QTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCS 316 (423)
T ss_dssp TTEEEEEET-----------TTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEE
T ss_pred CCEEEEEEC-----------CCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC---CCCEEEEECCCCEEEEEECCCCEE
T ss_conf 967999988-----------999499974999876799998874146448707---887489972467699995899399
Q ss_pred EEECCCCCCCCCCCCCCC--CCEEECCCCCCCCEEEEEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 990999886799999998--770211456788679999668800566069869996189999789999999876779521
Q 002748 550 TMGSPVYGQLGNPQADGK--LPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPSLVEA 627 (885)
Q Consensus 550 ~wG~N~~GQLG~~~~~~~--~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~ 627 (885)
+||.|.+||||.+..... .|..+.. +.. .|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|..
T Consensus 317 ~wG~n~~GqLG~g~~~~~~~~p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~ 394 (423)
T 3mvd_K 317 VVGRPEYGRLGLGDVKDVVEKPTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVS 394 (423)
T ss_dssp EEECCGGGTTCSSSCCSCEEEEEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCS
T ss_pred EEECCCCCCCCCCCCCCCCCCCEEECC-CCC-CEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 997998888798986665468667214-799-779997689869999589988997999798987999978605769737
Q ss_pred --CCCCCEEEEECCCCCCCEEEEEC
Q ss_conf --37982899973898321054210
Q 002748 628 --LKDKQVKSIACGTNFTAAICLHK 650 (885)
Q Consensus 628 --l~~~~V~~IacG~~hT~ai~~~k 650 (885)
+.+++|.+|+||.+||++|+...
T Consensus 395 ~~~~~~~v~~va~G~~ht~~l~~~~ 419 (423)
T 3mvd_K 395 KNTQGKHMLLASGGGQHAIFLVKAD 419 (423)
T ss_dssp TTTTTCCEEEEEECSSEEEEEEECC
T ss_pred CCCCCCEEEEEEECCCCEEEEECCC
T ss_conf 6647978999977888289997166
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=516.89 Aligned_cols=332 Identities=36% Similarity=0.656 Sum_probs=311.1
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEECCC-CEEEEC
Q ss_conf 8988999955876999983991999838999975788997733447840268985799950695899998399-499994
Q 002748 303 VLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSG-DLYTWG 381 (885)
Q Consensus 303 ~~~V~~Ia~G~~hs~~Lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~V~~Ia~G~~ht~aLT~dG-~Vy~wG 381 (885)
..+|++|+||..|+++|+++|+||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|+++|+++| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEC
T ss_conf 66469996187909999829989998699998889798655738878224689978999828450899988899899975
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 88999865689998414422465489999508997638963799914980998206998645889985301363541158
Q 002748 382 DGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLK 461 (885)
Q Consensus 382 ~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~ 461 (885)
.| .+||||++.......|.++.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|+++..+.
T Consensus 95 ~n--~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 95 WG--DFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp CC--GGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred CC--CCCCCCCCCCCCCCCCEEECC-CCCCCEEEEEECHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 99--886899899876461068414-689988999977046589738985999079987547798987755235743568
Q ss_pred CCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECEEEECCCCCCEEEEEECCCEEEE
Q ss_conf 97299997178658999995315887642689939999379999878999875132189510479983799732978999
Q 002748 462 GLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGHSLTVA 541 (885)
Q Consensus 462 ~~~I~~VacG~~ht~ai~e~~~~~~~~~~~~~G~ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~~tia 541 (885)
+.+|++|+||.+|+++|+ .+|+||+||.|.+||||+++......|+++..+...+|++|+||.+|+++
T Consensus 172 ~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~ 239 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVT------------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTIS 239 (406)
T ss_dssp TCCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEE
T ss_pred CCCEEEEECCCCEEEEEE------------CCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEE
T ss_conf 973899964787399994------------79988984179888778899877686278403689629999978981899
Q ss_pred EECCCEEEEEECCCCCCCCCCCCCC-CCCEEECCCCCCCCEEEEEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 9559909999099988679999999-877021145678867999966880056606986999618999978999999987
Q 002748 542 LTTSGHVYTMGSPVYGQLGNPQADG-KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRN 620 (885)
Q Consensus 542 Lt~dG~Vy~wG~N~~GQLG~~~~~~-~~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~WG~n~~GQLG~g~~~~~~ 620 (885)
|+++|+||+||.|.+||||.+.... ..|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++..+..
T Consensus 240 l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 318 (406)
T 4d9s_A 240 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC 318 (406)
T ss_dssp EETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEE
T ss_pred ECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 9489988996389988789998767505678232-589988999846787999959990999338998888789987774
Q ss_pred CCEEECCCCCCCEEEEECCCCCCCEEEEEC
Q ss_conf 677952137982899973898321054210
Q 002748 621 SPSLVEALKDKQVKSIACGTNFTAAICLHK 650 (885)
Q Consensus 621 ~P~~V~~l~~~~V~~IacG~~hT~ai~~~k 650 (885)
.|++|..+.+.+|++|+||.+|++||+...
T Consensus 319 ~p~~v~~~~~~~v~~va~G~~hs~alt~~G 348 (406)
T 4d9s_A 319 SPVQVRFPDDQKVVQVSCGWRHTLAVTERN 348 (406)
T ss_dssp EEEEECCGGGCCEEEEEECSSEEEEEETTS
T ss_pred CCEEEECCCCCCEEEEEECCCEEEEEECCC
T ss_conf 677973267985899992899499994899
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=487.94 Aligned_cols=324 Identities=35% Similarity=0.608 Sum_probs=192.9
Q ss_pred EEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCC
Q ss_conf 99558769999839919998389999757889977334478402689857999506958999983994999948899986
Q 002748 309 IACGGRHAALVNKQGEVFSWGEESGGRLGHGVDSDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFG 388 (885)
Q Consensus 309 Ia~G~~hs~~Lt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~V~~Ia~G~~ht~aLT~dG~Vy~wG~n~~~~G 388 (885)
+..-..+.++|+.+|+||+||.|.+||||.+...+...|.+++.+...+|++|+||.+|+++|+++|+||+||.| ..|
T Consensus 6 ~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n--~~G 83 (389)
T 3kci_A 6 HHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG--AGG 83 (389)
T ss_dssp ---------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECC--GGG
T ss_pred CCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECC--CCC
T ss_conf 465743226688998699703899751898968664277760134678659998477739999589819998899--998
Q ss_pred CCCCCCCCCEEEEEEECCCCCC--CEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEE
Q ss_conf 5689998414422465489999--50899763896379991498099820699864588998530136354115897299
Q 002748 389 LLGHGNEVSHWVPKRVNGPLEG--IHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTV 466 (885)
Q Consensus 389 qLG~g~~~~~~~P~~v~~~l~~--~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~ 466 (885)
|||.+.......|.++.. +.. .++++|+||..|+++|+++|+||+||.|.+||||+++......|++|+.+.+.+|+
T Consensus 84 qLG~g~~~~~~~p~~v~~-~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~ 162 (389)
T 3kci_A 84 RLGIGGTESVSTPTLLES-IQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVV 162 (389)
T ss_dssp TTSSSSSCCEEEEEECGG-GTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCCCCCCCCCCCEECCC-CCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEE
T ss_conf 889899677337777110-1577325999876877499994899799972998986789987567587684366897399
Q ss_pred EEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECEEEECCCCCCEEEEEECC--CEEEEEEC
Q ss_conf 9971786589999953158876426899399993799998789998751321895104799837997329--78999955
Q 002748 467 RAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCRVACGH--SLTVALTT 544 (885)
Q Consensus 467 ~VacG~~ht~ai~e~~~~~~~~~~~~~G~ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~--~~tiaLt~ 544 (885)
+|+||.+|+++|+ .+|+||+||.|.+||||+++......|+++..+.+.+|++|+||. .|+++|++
T Consensus 163 ~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~ 230 (389)
T 3kci_A 163 DVAAGGAHSACVT------------AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD 230 (389)
T ss_dssp EEEECSSEEEEEE------------TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEET
T ss_pred EEEECCCEEEEEE------------CCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEECC
T ss_conf 9971758589994------------8980899489988876899986604556850458983999997689858999905
Q ss_pred CCEEEEEECCCCCCCCCCCCCC-CCCEEECCCCCCCCEEEEEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 9909999099988679999999-877021145678867999966880056606986999618999978999999987677
Q 002748 545 SGHVYTMGSPVYGQLGNPQADG-KLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWGKGANGRLGHGDTDDRNSPS 623 (885)
Q Consensus 545 dG~Vy~wG~N~~GQLG~~~~~~-~~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~WG~n~~GQLG~g~~~~~~~P~ 623 (885)
+|+||+||.|.+||||.+.... ..|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++..+...|+
T Consensus 231 ~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~ 309 (389)
T 3kci_A 231 DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS-LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPR 309 (389)
T ss_dssp TTEEEEEECCGGGTTSSSSCCCEEEEEECGG-GTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEE
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 9979997399888779899888544679546-689967999479987999958993999858999888899986620875
Q ss_pred EECCCCCCCEEEEECCCCCCCEEEE
Q ss_conf 9521379828999738983210542
Q 002748 624 LVEALKDKQVKSIACGTNFTAAICL 648 (885)
Q Consensus 624 ~V~~l~~~~V~~IacG~~hT~ai~~ 648 (885)
+|+.+.+.+|++|+||.+|+++|+.
T Consensus 310 ~v~~l~~~~v~~ia~G~~h~~al~~ 334 (389)
T 3kci_A 310 QVQGLQGKKVIAIATGSLHCVCCTE 334 (389)
T ss_dssp ECGGGTTCCEEEEEECSSEEEEEET
T ss_pred EECCCCCCCEEEEEECCCEEEEECC
T ss_conf 8514799988999944570999989
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=472.44 Aligned_cols=326 Identities=23% Similarity=0.348 Sum_probs=273.8
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCC-CCCCCCEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEC
Q ss_conf 898899995587699998399199983899997578899-7733447840268985799950695899998399499994
Q 002748 303 VLDVQNIACGGRHAALVNKQGEVFSWGEESGGRLGHGVD-SDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWG 381 (885)
Q Consensus 303 ~~~V~~Ia~G~~hs~~Lt~~G~Vy~wG~n~~GqLG~g~~-~~~~~P~~V~~l~~~~V~~Ia~G~~ht~aLT~dG~Vy~wG 381 (885)
..++++|+||..|+++++++|+||+||.|.+||||++.. .+...|.+|..+. .|++|+||.+|+++|+++|+||+||
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCC--CCEEEEECCCEEEEEECCCEEEEEE
T ss_conf 12036886377653316699719998699877789999875676876756889--8449950789489995799499867
Q ss_pred CCCCCCCCCCCCCCCC--EEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEEC--CCCCCCCCCCCCCCCCCEEE
Q ss_conf 8899986568999841--4422465489999508997638963799914980998206--99864588998530136354
Q 002748 382 DGTYNFGLLGHGNEVS--HWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGD--GTFGVLGHGDRKSVSIPREV 457 (885)
Q Consensus 382 ~n~~~~GqLG~g~~~~--~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~--n~~GqLG~g~~~~~~~P~~V 457 (885)
.| .+||||++.... ...|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||++.......|.++
T Consensus 101 ~n--~~GqLG~~~~~~~~~~~P~~v~~---~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~ 175 (423)
T 3mvd_K 101 CN--DEGALGRDTSEDGSESKPDLIDL---PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL 175 (423)
T ss_dssp CC--SSSTTCSCCCSTTSSSSCEECCC---SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES
T ss_pred CC--CCCCCCCCCCCCCCCCCCEEECC---CCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 89--98589998767865657759747---99789998486828999179969997698898998674778887234696
Q ss_pred ECCCCCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCC-----------CCEEECEEEECCCC
Q ss_conf 1158972999971786589999953158876426899399993799998789998-----------75132189510479
Q 002748 458 ESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDK-----------EAKLVPTCVAALVE 526 (885)
Q Consensus 458 ~~l~~~~I~~VacG~~ht~ai~e~~~~~~~~~~~~~G~ly~WG~n~~GqLG~g~~-----------~~~~~P~~V~~l~~ 526 (885)
+.+.+|++|+||.+|+++|+ .+|+||+||.|.+||||++.. .....|+.+..+..
T Consensus 176 --~~~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~ 241 (423)
T 3mvd_K 176 --MEGTVCCSIASGADHLVILT------------TAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRA 241 (423)
T ss_dssp --STTCCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTC
T ss_pred --CCCCCEEEEECCCCEEEEEE------------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf --69985899953897499992------------6980999627867854777643445433345333568768840688
Q ss_pred CCEEEEEECCCEEEEE-ECCCEEEEEECCCCCCCCCCCCC-CCCCEEECCCCCCCCEEEEEECCCCEEEEECCCEEEEEC
Q ss_conf 9837997329789999-55990999909998867999999-987702114567886799996688005660698699961
Q 002748 527 PNFCRVACGHSLTVAL-TTSGHVYTMGSPVYGQLGNPQAD-GKLPNRVEGKLSKSFVEEIACGSYHVAVLTSKTEVYTWG 604 (885)
Q Consensus 527 ~~I~~Ia~G~~~tiaL-t~dG~Vy~wG~N~~GQLG~~~~~-~~~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~WG 604 (885)
..|++|+||.+|++++ +.+|+||+||.|.+||||.+... ...+.++... ...|++|+||.+|+++|+++|+||+||
T Consensus 242 ~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~--~~~v~~ia~G~~ht~alt~~G~v~~wG 319 (423)
T 3mvd_K 242 KPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE--LKDIRHIAGGQHHTVILTTDLKCSVVG 319 (423)
T ss_dssp CCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC--CCSEEEEEECSSEEEEEETTCCEEEEE
T ss_pred CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC--CCCEEEEECCCCEEEEEECCCCEEEEE
T ss_conf 627999979967999988999499974999876799998874146448707--887489972467699995899399997
Q ss_pred CCCCCCCCCCCCCC-CCCCEEECCCCCCCEEEEECCCCCCCEEEEECCC
Q ss_conf 89999789999999-8767795213798289997389832105421012
Q 002748 605 KGANGRLGHGDTDD-RNSPSLVEALKDKQVKSIACGTNFTAAICLHKWV 652 (885)
Q Consensus 605 ~n~~GQLG~g~~~~-~~~P~~V~~l~~~~V~~IacG~~hT~ai~~~kwv 652 (885)
.|.+||||+++..+ ...|++|+.+.+ .|++|+||.+|+++|+....+
T Consensus 320 ~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v 367 (423)
T 3mvd_K 320 RPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKL 367 (423)
T ss_dssp CCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCC-CEEEEECCCCEEEEECCCCCE
T ss_conf 998888798986665468667214799-779997689869999589988
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=470.65 Aligned_cols=323 Identities=23% Similarity=0.330 Sum_probs=158.0
Q ss_pred CCEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCCEEECC--C----CCCCEEEEEEC
Q ss_conf 52001889939998499999734898887773356--------------5556778456234--6----78988999955
Q 002748 253 GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFG--------------VKMDSSLPKALES--A----VVLDVQNIACG 312 (885)
Q Consensus 253 ~~~~~~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~--------------~~~~~~~P~~i~~--~----~~~~V~~Ia~G 312 (885)
+.++++.+|+||+||.|. .||||.+......... .......|.+++. + ...+|++|+||
T Consensus 78 Ht~alt~~G~v~~wG~n~-~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G 156 (473)
T 3of7_A 78 HTLALDEESNVWSWGCND-VGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAAT 156 (473)
T ss_dssp EEEEEETTCCEEEEECCT-TSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEEC
T ss_pred EEEEEECCCEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECC
T ss_conf 699991698499968998-8889998865333323456555675433444633467501343457754589818999826
Q ss_pred CCEEEEEECCCCEEEEEC--CCCCCCCCCCC--CCCCCCEEEECCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCC
Q ss_conf 876999983991999838--99997578899--77334478402689857999506958999983994999948899986
Q 002748 313 GRHAALVNKQGEVFSWGE--ESGGRLGHGVD--SDVLHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFG 388 (885)
Q Consensus 313 ~~hs~~Lt~~G~Vy~wG~--n~~GqLG~g~~--~~~~~P~~V~~l~~~~V~~Ia~G~~ht~aLT~dG~Vy~wG~n~~~~G 388 (885)
..|+++|+++|+||+||. +..||||++.. .....|..|..+.+.+|++|+||.+|++||+++|+||+||.| .+|
T Consensus 157 ~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n--~~G 234 (473)
T 3of7_A 157 DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNG--QQN 234 (473)
T ss_dssp SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECC--TTS
T ss_pred CCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECC--CCC
T ss_conf 887999948984999469968987548888777414476775524788879999637838999179929997699--888
Q ss_pred CCCCCCCCC----EEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCC----CCCCCEEEECC
Q ss_conf 568999841----4422465489999508997638963799914980998206998645889985----30136354115
Q 002748 389 LLGHGNEVS----HWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRK----SVSIPREVESL 460 (885)
Q Consensus 389 qLG~g~~~~----~~~P~~v~~~l~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GqLG~g~~~----~~~~P~~V~~l 460 (885)
|||.+.... ...|.++.. .+|++|+||.+|+++|+++|+||+||.|.+||||+++.. ....|++|..+
T Consensus 235 qLG~~~~~~~~~~~~~p~~~~~----~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~ 310 (473)
T 3of7_A 235 QLGRKVMERFRLKTLDPRPFGL----RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP 310 (473)
T ss_dssp TTSSCCCGGGTTTTCSCEECSC----CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCC
T ss_pred CCCCCCCCCCCCCCCCCEECCC----CCEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 8898844543335437521277----663899548975899916998899378989885888765688445413212556
Q ss_pred CCCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCC--------------CCEEECEEEECCCC
Q ss_conf 8972999971786589999953158876426899399993799998789998--------------75132189510479
Q 002748 461 KGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDK--------------EAKLVPTCVAALVE 526 (885)
Q Consensus 461 ~~~~I~~VacG~~ht~ai~e~~~~~~~~~~~~~G~ly~WG~n~~GqLG~g~~--------------~~~~~P~~V~~l~~ 526 (885)
.+.+|++|+||.+|+++|+ .+|+||+||.|.+||||.+.. .....|+.+..+
T Consensus 311 ~~~~i~~ia~G~~hs~~lt------------~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~-- 376 (473)
T 3of7_A 311 DNVVIRSIAAGEHHSLILS------------QDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV-- 376 (473)
T ss_dssp TTCCEEEEEECSSEEEEEE------------TTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS--
T ss_pred CCCCEEEEEECCCEEEEEE------------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC--
T ss_conf 7863899986788699993------------89829998789987418884446653100457860262167004787--
Q ss_pred CCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCC-C-CCCCCEEECCC-CCCCCEEEEEECCCCEEEEEC
Q ss_conf 9837997329789999559909999099988679999-9-99877021145-678867999966880056606
Q 002748 527 PNFCRVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQ-A-DGKLPNRVEGK-LSKSFVEEIACGSYHVAVLTS 596 (885)
Q Consensus 527 ~~I~~Ia~G~~~tiaLt~dG~Vy~wG~N~~GQLG~~~-~-~~~~P~~v~~~-l~~~~V~~Ia~G~~Ht~vLT~ 596 (885)
.+|++|+||.+|++||+++|+||+||.|.+||||.+. . +...|.+|... +.+..|+.|+||..|++++..
T Consensus 377 ~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 377 PKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred CCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEEEEEEE
T ss_conf 7537998578769999689848996289898887999776563784822566689728999518885999974
No 10
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=465.36 Aligned_cols=335 Identities=29% Similarity=0.456 Sum_probs=228.5
Q ss_pred EEEEECCCCCCCCCCC-CCEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCE
Q ss_conf 1886114653257788-520018899399984999997348988877733565556778456234678988999955876
Q 002748 237 FRVSLSSAVSSSSQGS-GHDDGDALGDVFIWGEGTGDGVLGGGLNRVGSCFGVKMDSSLPKALESAVVLDVQNIACGGRH 315 (885)
Q Consensus 237 ~r~~~~s~~s~~s~G~-~~~~~~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~h 315 (885)
.++.....+..+++|. +..+++.+|+||+||.|. .||||.+... ......|+.+.. ..+|++|+||..|
T Consensus 53 ~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~-~GqLG~~~~~-------~~~~~~P~~v~l--~~~i~~va~G~~h 122 (413)
T 1a12_A 53 ALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCND-EGALGRDTSV-------EGSEMVPGKVEL--QEKVVQVSAGDSH 122 (413)
T ss_dssp EEECCSSCEEEEEECSSEEEEEETTSCEEEEECCT-TSTTCSCCCS-------TTGGGSCEECCC--CSCEEEEEECSSE
T ss_pred EECCCCCCEEEEEECCCEEEEECCCCCEEEEECCC-CCCCCCCCCC-------CCCCCCCEEECC--CCCEEEEECCCCE
T ss_conf 67168898699986777589994799899988999-8877988888-------753458747538--8758999668873
Q ss_pred EEEEECCCCEEEEEC--CCCCCCCCCCCCCC-CCCEEEECCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCC
Q ss_conf 999983991999838--99997578899773-344784026898579995069589999839949999488999865689
Q 002748 316 AALVNKQGEVFSWGE--ESGGRLGHGVDSDV-LHPKLIDALSNMNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGH 392 (885)
Q Consensus 316 s~~Lt~~G~Vy~wG~--n~~GqLG~g~~~~~-~~P~~V~~l~~~~V~~Ia~G~~ht~aLT~dG~Vy~wG~n~~~~GqLG~ 392 (885)
+++|+++|+||+||. |.+||||.+..... ..|..| +...+|++|+||.+|+++|+++|+||+||.| .+||||.
T Consensus 123 s~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n--~~GqLG~ 198 (413)
T 1a12_A 123 TAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCG--EQGQLGR 198 (413)
T ss_dssp EEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCS
T ss_pred EEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCCCCEEEEEECCCEEEEECCCCCEEEEECC--CCCCCCC
T ss_conf 79984899489943776899863767866446678796--1899779998467618998589988983389--8886688
Q ss_pred CCCC-----------CEEEEEEECCCC----CCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEE
Q ss_conf 9984-----------144224654899----9950899763896379991498099820699864588998530136354
Q 002748 393 GNEV-----------SHWVPKRVNGPL----EGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREV 457 (885)
Q Consensus 393 g~~~-----------~~~~P~~v~~~l----~~~~Iv~IacG~~ht~aLt~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V 457 (885)
+... ....|..+..+. ...+|++|+||.+|+++|+++|+||+||.|.+||||+++......|.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v 278 (413)
T 1a12_A 199 VPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNL 278 (413)
T ss_dssp CGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEC
T ss_conf 75333455554553224467457631456667854899970788799996899799984998767779998763566770
Q ss_pred ECCCC--CEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCEEECEEEECCCCCCEEEEEE
Q ss_conf 11589--729999717865899999531588764268993999937999987899-987513218951047998379973
Q 002748 458 ESLKG--LRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHG-DKEAKLVPTCVAALVEPNFCRVAC 534 (885)
Q Consensus 458 ~~l~~--~~I~~VacG~~ht~ai~e~~~~~~~~~~~~~G~ly~WG~n~~GqLG~g-~~~~~~~P~~V~~l~~~~I~~Ia~ 534 (885)
..+.+ .+|++|+||.+|+++++ .+|+||+||.|.+||||++ +......|++|..+. +|++|+|
T Consensus 279 ~~l~~~~~~v~~ia~G~~hs~al~------------~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~ 344 (413)
T 1a12_A 279 TSFKNSTKSWVGFSGGQHHTVCMD------------SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVAC 344 (413)
T ss_dssp GGGCCTTCCEEEEEECSSEEEEEE------------TTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEE
T ss_pred HHCCCCCCEEEEEECCCCEEEEEE------------CCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCC--CEEEEEE
T ss_conf 101588732999950524589990------------79989986489888668999886366777922667--6259997
Q ss_pred CCCEEEEEECCCEEEEEECCCCCCCCCCCCC-CCCCEEECCC-CCCCCEEEEEECCCCEEEEECCCE
Q ss_conf 2978999955990999909998867999999-9877021145-678867999966880056606986
Q 002748 535 GHSLTVALTTSGHVYTMGSPVYGQLGNPQAD-GKLPNRVEGK-LSKSFVEEIACGSYHVAVLTSKTE 599 (885)
Q Consensus 535 G~~~tiaLt~dG~Vy~wG~N~~GQLG~~~~~-~~~P~~v~~~-l~~~~V~~Ia~G~~Ht~vLT~~G~ 599 (885)
|.+|++||+++|+||+||.|.+||||.+... ...|..+... +.+..|.+|+||.+|+++|+++|+
T Consensus 345 G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~ 411 (413)
T 1a12_A 345 GASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 411 (413)
T ss_dssp CSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred CCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 7564799948997899228989878799988755374854556589869999557882899981688
Done!