Query 002749
Match_columns 885
No_of_seqs 574 out of 4249
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:20:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 5.6E-79 1.2E-83 601.2 17.4 284 531-838 3-286 (303)
2 KOG0374 Serine/threonine speci 100.0 9.1E-74 2E-78 618.1 26.9 295 531-838 9-304 (331)
3 KOG0373 Serine/threonine speci 100.0 9.8E-72 2.1E-76 540.2 17.3 286 531-840 6-292 (306)
4 PTZ00480 serine/threonine-prot 100.0 2.9E-69 6.2E-74 581.5 30.6 294 531-840 11-304 (320)
5 cd07420 MPP_RdgC Drosophila me 100.0 1.8E-68 3.9E-73 576.5 31.4 285 530-834 6-320 (321)
6 cd07419 MPP_Bsu1_C Arabidopsis 100.0 5.4E-68 1.2E-72 577.4 29.9 303 534-836 1-311 (311)
7 PTZ00244 serine/threonine-prot 100.0 9.9E-68 2.1E-72 567.4 29.2 291 529-835 2-292 (294)
8 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 1.4E-67 3.1E-72 565.2 30.0 283 531-837 2-284 (285)
9 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 1.6E-67 3.4E-72 567.0 29.1 290 531-836 2-291 (293)
10 PTZ00239 serine/threonine prot 100.0 3.7E-67 8E-72 564.5 30.6 285 531-839 3-288 (303)
11 cd07417 MPP_PP5_C PP5, C-termi 100.0 6.8E-66 1.5E-70 558.6 29.8 291 527-841 12-308 (316)
12 cd07416 MPP_PP2B PP2B, metallo 100.0 3.8E-65 8.2E-70 552.3 31.5 286 532-840 4-300 (305)
13 smart00156 PP2Ac Protein phosp 100.0 5.3E-65 1.2E-69 544.1 29.3 269 554-836 1-269 (271)
14 cd07418 MPP_PP7 PP7, metalloph 100.0 1.2E-62 2.6E-67 537.6 31.5 298 528-835 9-364 (377)
15 KOG0371 Serine/threonine prote 100.0 3.3E-63 7.2E-68 492.6 13.0 286 531-840 20-305 (319)
16 KOG0375 Serine-threonine phosp 100.0 1.1E-62 2.5E-67 506.9 11.2 263 553-827 60-333 (517)
17 KOG0377 Protein serine/threoni 100.0 7.6E-53 1.7E-57 443.8 15.3 283 531-834 121-429 (631)
18 KOG0376 Serine-threonine phosp 100.0 2.5E-46 5.5E-51 407.3 13.9 274 553-840 182-461 (476)
19 PLN02193 nitrile-specifier pro 100.0 1.1E-36 2.3E-41 353.5 38.9 304 17-362 150-469 (470)
20 PLN02153 epithiospecifier prot 100.0 3E-36 6.5E-41 337.0 37.0 306 15-361 4-339 (341)
21 KOG4693 Uncharacterized conser 100.0 3.2E-36 6.9E-41 301.5 25.1 290 19-347 3-312 (392)
22 PLN02193 nitrile-specifier pro 100.0 2.1E-32 4.5E-37 317.6 37.2 281 45-368 120-417 (470)
23 KOG4152 Host cell transcriptio 100.0 1.8E-33 4E-38 302.1 22.0 304 21-362 24-364 (830)
24 KOG1230 Protein containing rep 100.0 3.2E-33 6.9E-38 295.3 22.2 326 18-364 55-474 (521)
25 KOG4441 Proteins containing BT 100.0 1.6E-32 3.6E-37 322.5 30.8 269 45-367 284-552 (571)
26 TIGR03547 muta_rot_YjhT mutatr 100.0 4.2E-31 9E-36 296.3 32.8 280 24-359 2-344 (346)
27 KOG4441 Proteins containing BT 100.0 8.6E-32 1.9E-36 316.4 28.3 255 7-306 300-556 (571)
28 KOG4693 Uncharacterized conser 100.0 3.5E-32 7.6E-37 272.6 21.1 227 26-278 75-312 (392)
29 PRK14131 N-acetylneuraminic ac 100.0 2E-30 4.3E-35 293.6 32.0 287 18-362 17-369 (376)
30 PHA02713 hypothetical protein; 100.0 1.2E-30 2.6E-35 307.9 31.4 253 74-369 271-541 (557)
31 KOG0379 Kelch repeat-containin 100.0 1.3E-30 2.8E-35 302.0 30.5 296 23-362 54-358 (482)
32 PLN02153 epithiospecifier prot 100.0 5.9E-30 1.3E-34 286.3 33.4 262 83-368 5-291 (341)
33 PHA02713 hypothetical protein; 100.0 8.3E-31 1.8E-35 309.4 27.3 251 10-306 274-543 (557)
34 TIGR03548 mutarot_permut cycli 100.0 6.4E-30 1.4E-34 283.9 31.7 274 28-347 2-313 (323)
35 cd00144 MPP_PPP_family phospho 100.0 1.2E-30 2.7E-35 274.5 19.9 218 584-822 1-224 (225)
36 PHA03098 kelch-like protein; P 100.0 7.2E-28 1.6E-32 285.7 30.8 253 75-366 264-516 (534)
37 KOG0379 Kelch repeat-containin 100.0 4.1E-28 8.9E-33 281.1 27.2 253 91-368 52-308 (482)
38 PHA03098 kelch-like protein; P 100.0 8.7E-28 1.9E-32 285.0 30.2 253 12-308 268-523 (534)
39 TIGR03548 mutarot_permut cycli 100.0 2E-26 4.3E-31 256.0 28.0 231 18-281 51-316 (323)
40 KOG1230 Protein containing rep 99.9 1.3E-26 2.7E-31 245.5 17.2 219 11-246 101-344 (521)
41 PRK14131 N-acetylneuraminic ac 99.9 3.5E-25 7.5E-30 250.8 27.2 252 17-302 61-374 (376)
42 PHA02790 Kelch-like protein; P 99.9 6.7E-25 1.4E-29 255.6 29.9 208 45-304 271-478 (480)
43 KOG4152 Host cell transcriptio 99.9 4.2E-25 9.1E-30 238.0 23.6 259 12-296 61-363 (830)
44 TIGR03547 muta_rot_YjhT mutatr 99.9 1.3E-24 2.8E-29 243.8 28.0 247 15-293 38-343 (346)
45 PHA02790 Kelch-like protein; P 99.9 1.1E-23 2.3E-28 245.5 29.3 209 105-366 267-475 (480)
46 cd07425 MPP_Shelphs Shewanella 99.9 2.1E-22 4.6E-27 208.2 14.5 185 584-807 1-196 (208)
47 PRK13625 bis(5'-nucleosyl)-tet 99.9 3.2E-22 7E-27 212.4 12.0 131 582-714 2-146 (245)
48 cd07422 MPP_ApaH Escherichia c 99.8 6.9E-21 1.5E-25 201.6 10.5 160 583-761 1-169 (257)
49 cd07423 MPP_PrpE Bacillus subt 99.8 1.3E-20 2.7E-25 199.3 11.2 130 581-713 1-142 (234)
50 cd07413 MPP_PA3087 Pseudomonas 99.8 7E-20 1.5E-24 191.6 16.5 123 584-711 2-143 (222)
51 PRK00166 apaH diadenosine tetr 99.8 1.1E-19 2.4E-24 194.5 16.4 125 582-719 2-131 (275)
52 TIGR00668 apaH bis(5'-nucleosy 99.8 3.8E-20 8.2E-25 195.6 11.6 127 582-722 2-134 (279)
53 cd07421 MPP_Rhilphs Rhilph pho 99.8 5.6E-19 1.2E-23 186.3 14.5 158 582-745 3-243 (304)
54 PRK11439 pphA serine/threonine 99.8 7.7E-19 1.7E-23 183.5 11.0 120 581-711 17-146 (218)
55 cd07424 MPP_PrpA_PrpB PrpA and 99.8 2E-18 4.3E-23 179.2 12.7 121 581-713 1-132 (207)
56 PHA02239 putative protein phos 99.8 5.4E-18 1.2E-22 177.9 14.5 140 582-744 2-184 (235)
57 PRK09968 serine/threonine-spec 99.7 1.8E-17 3.9E-22 172.9 10.1 120 581-711 15-144 (218)
58 COG3055 Uncharacterized protei 99.7 4.9E-15 1.1E-19 156.7 23.9 284 21-360 28-373 (381)
59 KOG2437 Muskelin [Signal trans 99.7 3.2E-17 6.9E-22 177.6 3.9 314 25-362 256-613 (723)
60 COG3055 Uncharacterized protei 99.5 8.2E-13 1.8E-17 140.0 19.4 240 15-283 67-364 (381)
61 KOG2437 Muskelin [Signal trans 99.4 1.2E-13 2.6E-18 150.2 6.1 205 138-356 239-466 (723)
62 PF00149 Metallophos: Calcineu 99.0 3.9E-09 8.5E-14 104.1 11.2 162 582-789 2-199 (200)
63 COG0639 ApaH Diadenosine tetra 98.8 7.3E-09 1.6E-13 100.7 6.7 147 659-812 2-155 (155)
64 PF13964 Kelch_6: Kelch motif 98.7 3.1E-08 6.8E-13 78.0 6.5 50 29-100 1-50 (50)
65 PLN02772 guanylate kinase 98.7 8.3E-08 1.8E-12 106.4 11.7 87 27-135 22-109 (398)
66 cd00841 MPP_YfcE Escherichia c 98.7 5.9E-07 1.3E-11 88.7 15.9 60 582-659 1-60 (155)
67 PF13964 Kelch_6: Kelch motif 98.7 5.3E-08 1.2E-12 76.7 6.3 50 99-153 1-50 (50)
68 PF13415 Kelch_3: Galactose ox 98.6 7.3E-08 1.6E-12 75.6 6.2 49 45-108 1-49 (49)
69 PLN02772 guanylate kinase 98.6 1.8E-07 3.8E-12 103.9 11.4 90 96-189 21-110 (398)
70 PRK09453 phosphodiesterase; Pr 98.6 1.2E-07 2.5E-12 96.5 9.3 68 582-659 2-77 (182)
71 PF12850 Metallophos_2: Calcin 98.6 9E-07 2E-11 87.1 14.0 60 582-659 2-61 (156)
72 PF13415 Kelch_3: Galactose ox 98.5 2.3E-07 5.1E-12 72.7 6.1 48 109-161 1-49 (49)
73 TIGR00040 yfcE phosphoesterase 98.5 3.1E-06 6.7E-11 84.0 14.9 62 582-658 2-64 (158)
74 PF07646 Kelch_2: Kelch motif; 98.5 3.5E-07 7.6E-12 71.7 6.4 49 29-94 1-49 (49)
75 PF07646 Kelch_2: Kelch motif; 98.5 4.4E-07 9.5E-12 71.1 6.4 48 258-306 1-48 (49)
76 PF13418 Kelch_4: Galactose ox 98.4 3.3E-07 7.2E-12 71.8 4.5 46 152-199 1-47 (49)
77 cd07379 MPP_239FB Homo sapiens 98.4 2.4E-06 5.1E-11 82.4 11.1 118 582-794 1-120 (135)
78 cd07388 MPP_Tt1561 Thermus the 98.4 4.4E-06 9.5E-11 87.3 13.5 70 582-658 6-75 (224)
79 PF01344 Kelch_1: Kelch motif; 98.4 4.9E-07 1.1E-11 70.1 4.4 46 29-93 1-46 (47)
80 cd07397 MPP_DevT Myxococcus xa 98.3 2.4E-06 5.3E-11 89.4 10.9 113 582-713 2-160 (238)
81 PF01344 Kelch_1: Kelch motif; 98.3 6.5E-07 1.4E-11 69.4 4.7 47 258-307 1-47 (47)
82 PF13854 Kelch_5: Kelch motif 98.3 8.4E-07 1.8E-11 67.1 5.1 39 325-363 2-42 (42)
83 PF13418 Kelch_4: Galactose ox 98.3 9.5E-07 2.1E-11 69.2 4.2 47 99-150 1-48 (49)
84 PF13854 Kelch_5: Kelch motif 98.2 1.8E-06 4E-11 65.2 5.3 40 96-135 1-41 (42)
85 PF03089 RAG2: Recombination a 98.2 0.00017 3.7E-09 75.1 20.9 126 111-240 40-189 (337)
86 cd00838 MPP_superfamily metall 98.2 1.1E-05 2.5E-10 75.8 11.4 117 584-794 1-119 (131)
87 PF07250 Glyoxal_oxid_N: Glyox 98.1 0.00015 3.3E-09 76.3 18.2 152 128-308 48-210 (243)
88 cd07394 MPP_Vps29 Homo sapiens 98.1 0.00017 3.6E-09 73.1 17.1 59 582-658 1-65 (178)
89 PF03089 RAG2: Recombination a 98.0 0.0015 3.2E-08 68.4 23.2 185 24-229 17-232 (337)
90 cd07392 MPP_PAE1087 Pyrobaculu 97.9 0.00017 3.6E-09 73.2 14.4 65 583-659 1-66 (188)
91 smart00612 Kelch Kelch domain. 97.9 2.2E-05 4.8E-10 60.2 4.7 47 47-110 1-47 (47)
92 PF07250 Glyoxal_oxid_N: Glyox 97.8 0.0018 3.9E-08 68.3 19.6 164 74-260 45-214 (243)
93 smart00612 Kelch Kelch domain. 97.8 4.1E-05 8.9E-10 58.8 5.1 46 165-215 1-46 (47)
94 cd07403 MPP_TTHA0053 Thermus t 97.7 0.00034 7.3E-09 66.9 11.4 56 584-656 1-56 (129)
95 PRK05340 UDP-2,3-diacylglucosa 97.6 0.00019 4.1E-09 76.5 8.8 206 582-826 2-231 (241)
96 cd07399 MPP_YvnB Bacillus subt 97.5 0.006 1.3E-07 63.7 18.6 71 765-836 135-213 (214)
97 cd07400 MPP_YydB Bacillus subt 97.5 0.0016 3.5E-08 63.2 13.2 29 766-794 101-129 (144)
98 KOG0376 Serine-threonine phosp 97.5 2.1E-05 4.5E-10 88.0 -0.3 243 553-812 14-299 (476)
99 cd07404 MPP_MS158 Microscilla 97.5 9.7E-05 2.1E-09 73.8 4.4 67 583-658 1-68 (166)
100 PRK11340 phosphodiesterase Yae 97.4 0.00034 7.5E-09 75.8 7.6 70 581-658 50-125 (271)
101 TIGR01640 F_box_assoc_1 F-box 97.3 0.038 8.1E-07 58.3 21.3 203 75-298 14-230 (230)
102 cd07385 MPP_YkuE_C Bacillus su 97.3 0.00042 9.1E-09 72.6 6.3 70 582-659 3-77 (223)
103 COG0622 Predicted phosphoester 97.2 0.012 2.6E-07 58.9 15.9 65 581-659 2-66 (172)
104 PRK11138 outer membrane biogen 97.2 0.13 2.9E-06 58.8 26.4 219 75-362 79-313 (394)
105 TIGR01854 lipid_A_lpxH UDP-2,3 97.2 0.001 2.2E-08 70.3 8.1 178 583-794 1-201 (231)
106 PRK11138 outer membrane biogen 97.1 0.19 4.2E-06 57.5 26.4 217 75-362 130-354 (394)
107 TIGR03729 acc_ester putative p 97.0 0.0013 2.8E-08 69.9 7.4 68 582-658 1-74 (239)
108 TIGR01640 F_box_assoc_1 F-box 97.0 0.083 1.8E-06 55.6 20.5 187 11-224 17-215 (230)
109 cd07390 MPP_AQ1575 Aquifex aeo 97.0 0.0028 6.1E-08 63.5 8.6 39 616-659 45-83 (168)
110 cd07396 MPP_Nbla03831 Homo sap 96.8 0.0031 6.7E-08 68.2 8.1 73 582-660 2-88 (267)
111 cd00840 MPP_Mre11_N Mre11 nucl 96.8 0.0026 5.6E-08 66.4 6.9 73 582-660 1-91 (223)
112 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.8 0.0026 5.7E-08 68.2 6.9 71 583-659 1-87 (262)
113 cd07395 MPP_CSTP1 Homo sapiens 96.8 0.073 1.6E-06 57.3 18.3 59 767-827 195-254 (262)
114 PRK04036 DNA polymerase II sma 96.7 0.0063 1.4E-07 71.6 9.9 120 580-710 243-388 (504)
115 KOG0918 Selenium-binding prote 96.6 0.00024 5.1E-09 77.2 -2.6 209 615-837 49-263 (476)
116 cd07391 MPP_PF1019 Pyrococcus 96.6 0.0041 9E-08 62.5 6.5 44 616-659 44-89 (172)
117 cd07398 MPP_YbbF-LpxH Escheric 96.5 0.0057 1.2E-07 63.7 7.1 27 765-791 176-202 (217)
118 PHA02546 47 endonuclease subun 96.5 0.0055 1.2E-07 68.7 7.2 72 582-659 2-90 (340)
119 cd07402 MPP_GpdQ Enterobacter 96.5 0.0084 1.8E-07 63.5 8.3 69 582-658 1-83 (240)
120 PF13360 PQQ_2: PQQ-like domai 96.5 1.4 3.1E-05 46.0 28.2 216 75-363 3-232 (238)
121 PF13360 PQQ_2: PQQ-like domai 96.5 1.4 3.1E-05 46.0 26.7 183 74-299 45-233 (238)
122 TIGR03300 assembly_YfgL outer 96.4 1.3 2.9E-05 50.2 26.4 184 74-302 114-305 (377)
123 COG1409 Icc Predicted phosphoh 96.2 0.14 3E-06 55.7 16.4 73 582-662 2-82 (301)
124 TIGR00024 SbcD_rel_arch putati 96.2 0.015 3.2E-07 61.2 8.0 72 581-659 15-103 (225)
125 TIGR00619 sbcd exonuclease Sbc 96.2 0.01 2.2E-07 63.7 6.9 72 582-659 2-89 (253)
126 cd08165 MPP_MPPE1 human MPPE1 96.1 0.0081 1.8E-07 59.4 5.5 44 616-659 41-90 (156)
127 cd07386 MPP_DNA_pol_II_small_a 96.1 0.018 3.8E-07 61.4 8.4 73 584-659 2-95 (243)
128 PRK11148 cyclic 3',5'-adenosin 96.1 0.014 3E-07 63.5 7.6 70 581-658 15-98 (275)
129 cd00839 MPP_PAPs purple acid p 96.1 0.032 7E-07 61.0 10.5 37 766-802 181-217 (294)
130 PRK10966 exonuclease subunit S 96.0 0.014 3E-07 66.9 7.0 71 582-659 2-88 (407)
131 cd07383 MPP_Dcr2 Saccharomyces 95.9 0.024 5.2E-07 58.4 7.9 41 616-656 44-87 (199)
132 cd07393 MPP_DR1119 Deinococcus 95.8 0.023 4.9E-07 60.2 7.3 46 766-813 181-229 (232)
133 TIGR03300 assembly_YfgL outer 95.8 2.5 5.4E-05 47.9 24.6 180 75-299 155-341 (377)
134 TIGR00583 mre11 DNA repair pro 95.5 0.038 8.3E-07 63.0 8.0 72 582-659 5-124 (405)
135 cd08163 MPP_Cdc1 Saccharomyces 95.2 0.37 7.9E-06 51.8 14.1 36 753-788 188-226 (257)
136 cd07401 MPP_TMEM62_N Homo sapi 95.1 0.046 1E-06 58.8 6.9 27 770-796 190-216 (256)
137 COG2908 Uncharacterized protei 95.0 0.086 1.9E-06 54.8 8.2 196 585-828 2-229 (237)
138 COG2129 Predicted phosphoester 94.9 2.7 5.8E-05 43.6 18.4 205 581-826 4-217 (226)
139 cd00216 PQQ_DH Dehydrogenases 94.7 12 0.00026 44.2 26.8 203 74-302 174-432 (488)
140 cd07384 MPP_Cdc1_like Saccharo 94.5 0.076 1.7E-06 53.4 6.2 44 616-659 48-101 (171)
141 PF07893 DUF1668: Protein of u 94.2 0.97 2.1E-05 50.7 15.0 123 162-306 75-217 (342)
142 COG1408 Predicted phosphohydro 93.9 0.13 2.7E-06 56.1 7.0 71 581-659 45-119 (284)
143 cd08166 MPP_Cdc1_like_1 unchar 93.9 0.066 1.4E-06 54.6 4.4 43 616-658 45-93 (195)
144 cd07380 MPP_CWF19_N Schizosacc 93.9 0.14 3E-06 50.2 6.4 68 584-656 1-68 (150)
145 PF12768 Rax2: Cortical protei 93.7 3.1 6.6E-05 45.3 16.9 113 74-198 15-130 (281)
146 COG4186 Predicted phosphoester 93.5 0.19 4.1E-06 48.5 6.3 41 616-660 48-88 (186)
147 cd00845 MPP_UshA_N_like Escher 93.0 0.17 3.7E-06 54.1 6.1 66 582-657 2-81 (252)
148 COG1407 Predicted ICC-like pho 93.0 0.34 7.4E-06 50.6 7.9 71 580-660 19-112 (235)
149 PF07893 DUF1668: Protein of u 92.9 2.3 4.9E-05 47.8 15.1 120 45-197 76-215 (342)
150 cd08164 MPP_Ted1 Saccharomyces 92.3 0.28 6.1E-06 50.0 6.2 66 588-658 24-111 (193)
151 cd00216 PQQ_DH Dehydrogenases 92.2 30 0.00064 40.9 29.9 124 74-197 119-274 (488)
152 COG1311 HYS2 Archaeal DNA poly 91.1 3.4 7.3E-05 47.4 13.5 191 581-812 226-451 (481)
153 PF14582 Metallophos_3: Metall 90.9 0.3 6.4E-06 50.4 4.6 73 581-659 6-103 (255)
154 PLN02533 probable purple acid 90.1 0.45 9.8E-06 55.0 5.8 70 581-659 140-212 (427)
155 PF12768 Rax2: Cortical protei 89.7 4.3 9.4E-05 44.1 12.5 125 113-253 2-130 (281)
156 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.1 57 0.0012 39.0 25.0 113 75-197 79-199 (527)
157 cd07410 MPP_CpdB_N Escherichia 88.5 0.68 1.5E-05 50.3 5.5 21 769-789 208-229 (277)
158 COG0420 SbcD DNA repair exonuc 87.7 1.4 3E-05 50.5 7.6 73 582-660 2-90 (390)
159 PF14583 Pectate_lyase22: Olig 87.2 24 0.00051 40.0 16.4 225 74-347 59-303 (386)
160 PF06874 FBPase_2: Firmicute f 86.9 0.6 1.3E-05 54.9 3.9 57 766-823 507-573 (640)
161 PF08321 PPP5: PPP5 TPR repeat 86.7 2.2 4.8E-05 38.3 6.6 43 527-579 53-95 (95)
162 cd07387 MPP_PolD2_C PolD2 (DNA 86.2 26 0.00057 37.6 15.6 48 780-832 205-255 (257)
163 cd07378 MPP_ACP5 Homo sapiens 84.4 1.9 4.2E-05 46.6 6.3 23 767-789 190-212 (277)
164 PRK13684 Ycf48-like protein; P 82.8 86 0.0019 35.0 24.1 175 84-305 118-297 (334)
165 PF08450 SGL: SMP-30/Gluconola 82.8 67 0.0014 33.8 23.7 190 74-304 21-221 (246)
166 cd07412 MPP_YhcR_N Bacillus su 82.6 2 4.2E-05 47.1 5.4 66 582-657 2-87 (288)
167 KOG3662 Cell division control 82.0 2.7 5.8E-05 47.6 6.2 42 616-657 96-143 (410)
168 cd07408 MPP_SA0022_N Staphyloc 81.9 2.5 5.3E-05 45.4 5.8 65 582-657 2-81 (257)
169 COG1520 FOG: WD40-like repeat 80.8 1E+02 0.0023 34.7 27.5 196 75-305 78-279 (370)
170 KOG2055 WD40 repeat protein [G 80.6 49 0.0011 37.8 15.1 181 45-276 224-406 (514)
171 cd07411 MPP_SoxB_N Thermus the 78.5 4.2 9.1E-05 43.8 6.2 35 617-657 55-94 (264)
172 PRK05137 tolB translocation pr 78.4 1.4E+02 0.003 34.6 25.4 148 126-304 226-374 (435)
173 TIGR03075 PQQ_enz_alc_DH PQQ-d 77.1 1.7E+02 0.0037 35.0 20.3 123 74-199 129-291 (527)
174 PLN00033 photosystem II stabil 76.5 1.5E+02 0.0032 34.1 24.5 179 84-305 165-365 (398)
175 TIGR02800 propeller_TolB tol-p 75.0 1.6E+02 0.0034 33.6 22.4 147 126-305 214-363 (417)
176 cd00094 HX Hemopexin-like repe 73.4 1.1E+02 0.0024 31.1 17.0 155 104-299 11-178 (194)
177 PF10282 Lactonase: Lactonase, 72.9 1.6E+02 0.0035 32.8 19.3 199 77-307 17-235 (345)
178 COG1768 Predicted phosphohydro 72.2 7 0.00015 38.9 5.2 40 616-659 46-87 (230)
179 cd00842 MPP_ASMase acid sphing 71.9 7.4 0.00016 42.6 6.1 45 616-660 71-124 (296)
180 PRK11028 6-phosphogluconolacto 71.2 1.7E+02 0.0036 32.2 23.4 143 75-244 12-159 (330)
181 TIGR03866 PQQ_ABC_repeats PQQ- 70.8 1.5E+02 0.0032 31.4 22.3 121 75-225 11-134 (300)
182 KOG2055 WD40 repeat protein [G 70.8 52 0.0011 37.6 12.1 107 163-298 268-376 (514)
183 PF08268 FBA_3: F-box associat 70.4 42 0.00091 31.7 10.2 86 106-198 2-89 (129)
184 PF08268 FBA_3: F-box associat 69.8 87 0.0019 29.5 12.2 70 74-145 19-89 (129)
185 cd00200 WD40 WD40 domain, foun 69.7 1.3E+02 0.0029 30.5 22.7 64 109-189 62-125 (289)
186 COG4880 Secreted protein conta 69.5 66 0.0014 36.5 12.4 185 72-305 403-599 (603)
187 COG3855 Fbp Uncharacterized pr 68.3 5.8 0.00013 44.8 4.2 40 616-660 193-232 (648)
188 PRK09419 bifunctional 2',3'-cy 67.8 7.7 0.00017 51.0 5.9 66 582-657 662-735 (1163)
189 COG1520 FOG: WD40-like repeat 67.0 2.2E+02 0.0048 32.0 17.8 156 74-240 162-319 (370)
190 KOG3325 Membrane coat complex 66.6 23 0.00049 34.3 7.1 101 583-729 3-108 (183)
191 cd07409 MPP_CD73_N CD73 ecto-5 66.1 13 0.00029 40.4 6.5 25 765-789 192-217 (281)
192 TIGR02800 propeller_TolB tol-p 64.4 2.6E+02 0.0055 31.8 21.2 141 75-243 214-356 (417)
193 PF08450 SGL: SMP-30/Gluconola 64.1 1.8E+02 0.004 30.4 14.7 146 77-241 62-213 (246)
194 PF10282 Lactonase: Lactonase, 63.8 1.3E+02 0.0028 33.6 14.1 176 101-305 145-333 (345)
195 KOG0310 Conserved WD40 repeat- 63.8 2.8E+02 0.0061 32.1 18.6 66 108-189 121-186 (487)
196 cd00094 HX Hemopexin-like repe 62.4 1.8E+02 0.004 29.5 17.2 157 160-363 14-177 (194)
197 PRK04792 tolB translocation pr 62.4 3E+02 0.0066 32.0 23.3 147 126-305 242-391 (448)
198 PF04042 DNA_pol_E_B: DNA poly 61.8 12 0.00027 38.5 5.1 72 583-660 1-93 (209)
199 PF14870 PSII_BNR: Photosynthe 61.2 2.6E+02 0.0056 30.8 24.4 185 77-306 83-271 (302)
200 KOG0649 WD40 repeat protein [G 58.4 2.4E+02 0.0052 29.9 13.2 88 84-189 98-188 (325)
201 cd00200 WD40 WD40 domain, foun 57.9 2.2E+02 0.0047 28.9 22.7 177 75-298 73-251 (289)
202 cd07406 MPP_CG11883_N Drosophi 57.7 19 0.00042 38.5 5.8 57 591-657 21-82 (257)
203 PRK04043 tolB translocation pr 57.3 3.6E+02 0.0078 31.2 20.3 152 127-306 214-367 (419)
204 KOG0646 WD40 repeat protein [G 56.7 1.7E+02 0.0038 33.5 12.9 129 73-226 101-238 (476)
205 PLN00181 protein SPA1-RELATED; 56.7 5E+02 0.011 32.7 23.8 146 110-297 545-691 (793)
206 KOG0316 Conserved WD40 repeat- 56.4 2.7E+02 0.0058 29.5 15.1 176 75-299 81-260 (307)
207 KOG0643 Translation initiation 55.7 2.2E+02 0.0047 30.6 12.6 174 72-296 117-319 (327)
208 PRK03629 tolB translocation pr 55.6 3.8E+02 0.0082 31.0 25.3 149 126-305 223-372 (429)
209 PRK04792 tolB translocation pr 55.0 4E+02 0.0086 31.0 20.8 142 75-243 242-384 (448)
210 PRK01742 tolB translocation pr 54.7 3.9E+02 0.0084 30.8 22.8 140 126-304 228-369 (429)
211 PLN00033 photosystem II stabil 54.4 3.9E+02 0.0084 30.7 23.3 94 84-196 119-214 (398)
212 KOG2476 Uncharacterized conser 53.5 29 0.00063 39.6 6.3 71 580-655 5-75 (528)
213 KOG4649 PQQ (pyrrolo-quinoline 53.1 3.2E+02 0.0069 29.4 13.6 94 125-243 32-125 (354)
214 PRK00178 tolB translocation pr 53.0 4E+02 0.0088 30.5 24.7 146 126-305 223-372 (430)
215 PRK04922 tolB translocation pr 52.6 4.2E+02 0.0091 30.6 23.4 147 125-305 227-377 (433)
216 TIGR00282 metallophosphoestera 52.5 27 0.00058 37.7 5.8 67 582-658 2-71 (266)
217 KOG1378 Purple acid phosphatas 51.3 22 0.00047 40.9 5.0 34 768-801 322-355 (452)
218 PF02897 Peptidase_S9_N: Proly 51.1 4.2E+02 0.0091 30.2 18.2 204 74-304 149-366 (414)
219 KOG1432 Predicted DNA repair e 49.9 42 0.00091 37.1 6.7 44 616-659 103-148 (379)
220 PRK11028 6-phosphogluconolacto 49.8 3.8E+02 0.0083 29.3 24.7 99 75-189 57-158 (330)
221 PRK05137 tolB translocation pr 49.6 4.6E+02 0.01 30.2 21.4 149 124-304 180-330 (435)
222 PTZ00235 DNA polymerase epsilo 49.0 53 0.0012 35.7 7.3 76 581-658 28-122 (291)
223 PF02191 OLF: Olfactomedin-lik 48.8 3.7E+02 0.0079 28.8 15.7 169 109-302 30-209 (250)
224 TIGR03866 PQQ_ABC_repeats PQQ- 48.1 3.5E+02 0.0076 28.4 27.6 93 75-189 53-147 (300)
225 COG0737 UshA 5'-nucleotidase/2 47.2 25 0.00053 41.9 5.0 72 580-658 26-115 (517)
226 cd07407 MPP_YHR202W_N Saccharo 46.9 28 0.00061 37.9 5.0 38 616-658 53-97 (282)
227 cd07405 MPP_UshA_N Escherichia 46.8 28 0.00062 37.9 5.0 19 772-790 200-221 (285)
228 PTZ00421 coronin; Provisional 46.4 5.7E+02 0.012 30.3 17.7 62 165-243 139-200 (493)
229 PF12217 End_beta_propel: Cata 45.9 1.5E+02 0.0032 31.7 9.5 114 45-173 200-334 (367)
230 PRK04922 tolB translocation pr 45.4 5.3E+02 0.012 29.7 20.4 102 179-304 228-332 (433)
231 PRK02889 tolB translocation pr 44.6 5.5E+02 0.012 29.6 23.2 147 126-304 220-368 (427)
232 PF09910 DUF2139: Uncharacteri 43.5 4.3E+02 0.0094 29.0 12.8 59 119-187 166-230 (339)
233 PRK13684 Ycf48-like protein; P 43.0 5.1E+02 0.011 28.8 23.7 158 84-276 75-233 (334)
234 KOG0308 Conserved WD40 repeat- 42.7 3.4E+02 0.0075 32.7 12.8 122 109-253 129-266 (735)
235 PF05096 Glu_cyclase_2: Glutam 42.3 1.7E+02 0.0037 31.5 9.8 183 45-276 55-250 (264)
236 PTZ00420 coronin; Provisional 42.3 7E+02 0.015 30.2 19.2 61 111-189 139-199 (568)
237 KOG2863 RNA lariat debranching 41.4 26 0.00057 38.7 3.5 72 582-659 2-89 (456)
238 KOG0296 Angio-associated migra 40.7 5.7E+02 0.012 28.7 21.0 135 45-225 75-210 (399)
239 PTZ00421 coronin; Provisional 40.6 6.9E+02 0.015 29.6 20.3 63 110-189 138-200 (493)
240 PF14870 PSII_BNR: Photosynthe 40.2 5.5E+02 0.012 28.3 23.2 242 18-347 6-253 (302)
241 KOG0649 WD40 repeat protein [G 39.5 5E+02 0.011 27.7 15.7 117 162-306 125-245 (325)
242 KOG3339 Predicted glycosyltran 37.3 1.2E+02 0.0026 30.7 7.0 89 615-708 40-140 (211)
243 cd08162 MPP_PhoA_N Synechococc 37.1 58 0.0012 36.1 5.6 69 583-657 3-90 (313)
244 PRK09420 cpdB bifunctional 2', 36.1 53 0.0012 40.3 5.5 69 579-657 24-121 (649)
245 TIGR01390 CycNucDiestase 2',3' 34.8 52 0.0011 40.2 5.1 66 582-657 4-98 (626)
246 cd07382 MPP_DR1281 Deinococcus 34.5 87 0.0019 33.6 6.3 67 582-658 1-70 (255)
247 KOG2321 WD40 repeat protein [G 34.5 3.4E+02 0.0073 32.3 11.0 98 74-189 154-260 (703)
248 KOG2321 WD40 repeat protein [G 34.3 8.8E+02 0.019 29.0 14.3 67 149-227 130-197 (703)
249 PRK00178 tolB translocation pr 34.0 7.6E+02 0.017 28.2 21.6 102 179-304 223-327 (430)
250 PF06433 Me-amine-dh_H: Methyl 33.9 5.5E+02 0.012 28.8 12.3 107 74-189 16-128 (342)
251 KOG3947 Phosphoesterases [Gene 33.7 58 0.0013 34.9 4.5 65 581-659 62-127 (305)
252 PRK09419 bifunctional 2',3'-cy 33.3 54 0.0012 43.3 5.3 23 767-789 256-279 (1163)
253 KOG2048 WD40 repeat protein [G 32.3 1E+03 0.022 29.0 19.8 92 256-375 425-519 (691)
254 PF09637 Med18: Med18 protein; 29.8 57 0.0012 34.9 3.9 41 766-809 139-179 (250)
255 PRK04043 tolB translocation pr 29.3 9.3E+02 0.02 27.8 20.3 192 75-305 213-409 (419)
256 PF05096 Glu_cyclase_2: Glutam 29.3 7.6E+02 0.016 26.7 13.3 109 160-299 52-160 (264)
257 PRK05583 ribosomal protein L7A 29.2 56 0.0012 29.9 3.2 69 758-827 13-90 (104)
258 PF13258 DUF4049: Domain of un 28.8 95 0.0021 32.4 4.9 60 645-713 127-187 (318)
259 KOG4649 PQQ (pyrrolo-quinoline 27.4 8.1E+02 0.018 26.4 13.1 97 74-194 32-130 (354)
260 PF05567 Neisseria_PilC: Neiss 26.4 9.4E+02 0.02 26.9 13.9 56 125-188 180-240 (335)
261 KOG0646 WD40 repeat protein [G 25.9 2.9E+02 0.0064 31.8 8.5 221 76-358 19-249 (476)
262 PF13088 BNR_2: BNR repeat-lik 25.1 8.2E+02 0.018 25.7 19.1 212 84-308 29-254 (275)
263 PRK11907 bifunctional 2',3'-cy 25.0 1E+02 0.0022 38.8 5.4 68 580-657 115-212 (814)
264 PF03178 CPSF_A: CPSF A subuni 24.5 6.9E+02 0.015 27.3 11.6 144 46-224 42-191 (321)
265 PF13088 BNR_2: BNR repeat-lik 24.4 5.1E+02 0.011 27.3 10.3 136 77-221 136-275 (275)
266 PF02239 Cytochrom_D1: Cytochr 24.3 5.3E+02 0.011 29.2 10.7 141 125-298 15-160 (369)
267 TIGR00282 metallophosphoestera 24.2 89 0.0019 33.8 4.1 39 616-658 2-41 (266)
268 PTZ00422 glideosome-associated 24.0 1.3E+02 0.0027 34.5 5.4 21 769-789 239-259 (394)
269 TIGR01530 nadN NAD pyrophospha 23.6 1.5E+02 0.0032 35.7 6.3 37 616-657 52-93 (550)
270 PF03178 CPSF_A: CPSF A subuni 23.5 7.4E+02 0.016 27.1 11.5 138 179-362 62-203 (321)
271 PF15525 DUF4652: Domain of un 23.1 3.3E+02 0.0071 27.8 7.4 73 66-139 79-153 (200)
272 COG4880 Secreted protein conta 23.1 1.2E+03 0.026 26.9 13.8 109 103-225 380-491 (603)
273 COG0634 Hpt Hypoxanthine-guani 22.8 5.3E+02 0.012 26.0 8.8 84 551-638 9-117 (178)
274 KOG0291 WD40-repeat-containing 22.6 1.5E+03 0.033 28.0 13.9 182 75-298 414-614 (893)
275 PLN00181 protein SPA1-RELATED; 22.4 1.6E+03 0.035 28.1 18.0 22 268-298 629-650 (793)
276 COG4946 Uncharacterized protei 22.1 1.3E+03 0.028 27.0 16.1 192 73-306 105-305 (668)
277 smart00284 OLF Olfactomedin-li 22.0 1E+03 0.022 25.6 17.2 167 109-299 34-211 (255)
278 PRK03629 tolB translocation pr 20.8 1.3E+03 0.028 26.5 21.8 191 75-304 223-414 (429)
279 PRK09558 ushA bifunctional UDP 20.4 1.3E+02 0.0028 36.2 4.9 18 772-789 236-256 (551)
280 PF02875 Mur_ligase_C: Mur lig 20.3 3.7E+02 0.0081 23.3 6.8 71 580-655 11-82 (91)
281 PF02191 OLF: Olfactomedin-lik 20.2 1.1E+03 0.023 25.2 16.2 160 96-275 65-237 (250)
282 KOG0306 WD40-repeat-containing 20.2 1.7E+03 0.037 27.6 14.4 189 34-294 378-580 (888)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-79 Score=601.23 Aligned_cols=284 Identities=41% Similarity=0.724 Sum_probs=272.1
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002749 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
+++.|+.|.+.. .+.+.++..||.++.+||.+|++|+.++.||+|||||||||.||+.+|+..|-++..
T Consensus 3 ldr~ie~L~~~~----------li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t- 71 (303)
T KOG0372|consen 3 LDRQIEQLRRCE----------LIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPET- 71 (303)
T ss_pred HHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCC-
Confidence 478899998873 688999999999999999999999999999999999999999999999999988877
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002749 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|+|||||||||.+|+|++.||++||++||++|+|||||||++.++..|||++||++||+. ..+|+.+.++|
T Consensus 72 -----~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~---~~vWr~c~eiF 143 (303)
T KOG0372|consen 72 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGS---ANVWRYCTEIF 143 (303)
T ss_pred -----ceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCC---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999985 47999999999
Q ss_pred cCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHH
Q 002749 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
++||++|+|+++|||||||++|++.++|||+.+.|-.+++.++ .++|||||||.+ ..||.-++||+| +.||.+++
T Consensus 144 dyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~g-~m~DllWSDPee---~~g~~~SPRGaG-ylFG~dvv 218 (303)
T KOG0372|consen 144 DYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQEVPHDG-AMCDLLWSDPEE---GPGWGLSPRGAG-YLFGEDVV 218 (303)
T ss_pred HhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccccCCCCC-cchheeccCccc---CCCcccCCCCcc-ccccHHHH
Confidence 9999999999999999999999999999999999999999887 899999999986 459999999999 78999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCcceEEeEEecCCC
Q 002749 771 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLP 838 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~ 838 (885)
++||+.||+++|+||||.|++||++.++++|+|||||||||++++|.||||.++++..-.+++|...+
T Consensus 219 ~~F~~~N~~~~I~RaHQLv~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~lde~~~~~F~vFeaa~ 286 (303)
T KOG0372|consen 219 ESFLEANGLSLICRAHQLVMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILELDEDLDKDFRVFEAAP 286 (303)
T ss_pred HHHHHhCChHHHHHHHHHHHhhHHHhcCCceEEEecCCchhhhcCChHHheeeccccCcceEeeecch
Confidence 99999999999999999999999999999999999999999999999999999999999999997654
No 2
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=9.1e-74 Score=618.15 Aligned_cols=295 Identities=52% Similarity=0.931 Sum_probs=276.7
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhC-CCCCC
Q 002749 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYG-FPSTA 609 (885)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g-~~~~~ 609 (885)
.+++|..++..............|+++||.+||..+.++|..+|+++++++||+|||||||||.||+++|+..| +|++.
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp~~ 88 (331)
T KOG0374|consen 9 LDELIRKLLSVGNKKTEKKRQVPLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPPDQ 88 (331)
T ss_pred HHHHHHHHhhccccCCCcccceeccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCCcc
Confidence 56777777776543333444456999999999999999999999999999999999999999999999999999 88877
Q ss_pred CCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhh
Q 002749 610 GDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQL 689 (885)
Q Consensus 610 ~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~ 689 (885)
+|||||||||||++|+|++.||+++|++||++|++||||||++.+|..|||++||.++|+. ..+|+.|+++
T Consensus 89 ------~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~---~~~w~~F~~~ 159 (331)
T KOG0374|consen 89 ------NYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGE---IKLWKAFNDA 159 (331)
T ss_pred ------cEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcch---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999964 5799999999
Q ss_pred ccCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHH
Q 002749 690 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDR 769 (885)
Q Consensus 690 f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~ 769 (885)
|++||++|+|+++|+|+||||+|.+.++++|+.|.||.+.++.+ +++|||||||+. .+.||.+|.||.+ +.||+++
T Consensus 160 f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~rp~~~~~~g-ll~DLlWsdp~~--~~~g~~~n~Rg~s-~~fg~~~ 235 (331)
T KOG0374|consen 160 FNCLPLAALIDGKILCMHGGLSPHLKSLDQIRAIPRPTDSPDKG-LLCDLLWSDPDD--DVPGWEENDRGVS-FTFGPAV 235 (331)
T ss_pred HhhCchhheecceEEEecCCCChhhcChHHHhhccCCcCCCccc-eeeeeeecCCCC--CCCCcccCCCcee-eEecHHH
Confidence 99999999999999999999999999999999999998888766 999999999986 3789999999999 8999999
Q ss_pred HHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCcceEEeEEecCCC
Q 002749 770 VSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLP 838 (885)
Q Consensus 770 ~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~ 838 (885)
+++||+++++++||||||+++||||+|++++++||||||+|||.++|+||+|.|++++.+++++++|..
T Consensus 236 v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~~n~gavm~Vd~~l~~sf~~l~p~~ 304 (331)
T KOG0374|consen 236 VEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEFDNAGAVMRVDKNLKCSFVILRPEG 304 (331)
T ss_pred HHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccccCCceEEEEECCCCeEEEEEecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999953
No 3
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-72 Score=540.22 Aligned_cols=286 Identities=38% Similarity=0.707 Sum_probs=270.7
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002749 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
.++.|+...+.+ .|++.|+..||+.++++|..|.+++.++.||.|||||||||.||+++|+..|-.|+.
T Consensus 6 ~d~wi~~vk~ck----------yLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~t- 74 (306)
T KOG0373|consen 6 LDQWIETVKKCK----------YLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDT- 74 (306)
T ss_pred HHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCc-
Confidence 356676665553 689999999999999999999999999999999999999999999999999877765
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002749 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|||+|||||||.+|+|++.+|+.||.+||.+|.|||||||.+.+...|||++||..|||.. ..|+.+.++|
T Consensus 75 -----nYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGna---n~wkycckVF 146 (306)
T KOG0373|consen 75 -----NYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNA---NVWKYCCKVF 146 (306)
T ss_pred -----ceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCc---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999865 7999999999
Q ss_pred cCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHH
Q 002749 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
+.|++||+|+++|||||||+||++.++|||+.|.|..++|.++ .+|||+||||++ ++.|.-++||+| +.||.+++
T Consensus 147 D~LtlaAiID~~vLCVHGGLSPdirtlDqir~i~R~qEiPh~G-~fcDlmWSDPed---ve~W~vSpRGAG-wlFGskVt 221 (306)
T KOG0373|consen 147 DFLTLAAIIDEKVLCVHGGLSPDIRTLDQIRLIERNQEIPHEG-PFCDLMWSDPED---VETWAVSPRGAG-WLFGSKVT 221 (306)
T ss_pred hhhhHHHHhcCcEEEEcCCCCccceeHHHHHhHHhhccCCCCC-CccceeccChhh---hhhheeCCCCcc-eeechhhh
Confidence 9999999999999999999999999999999999999999987 799999999985 789999999999 68999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCe-EEEEeccccccCCCCCeEEEEEEcCcceEEeEEecCCCCC
Q 002749 771 SDFCKRNKLQLIIRAHECVMDGFERFAQGQ-LITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 840 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~-~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 840 (885)
.+|+..|+|++|+|+||.|++||++.+++| |+|||||||||.+++|.|+||.++++++-++|+|..+|..
T Consensus 222 ~eF~~iN~L~LicRaHQLV~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~d~~~~r~~k~F~avpd~ 292 (306)
T KOG0373|consen 222 TEFNHINNLNLICRAHQLVQEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSFDDNLERETKIFSAVPDN 292 (306)
T ss_pred HHHHhccchHHHHhHHHHHHhhHHhccCCCCEEEEecCCchhhhccCeeeEEEecccCCccceeeeecCCc
Confidence 999999999999999999999999999988 9999999999999999999999999999999999876543
No 4
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=2.9e-69 Score=581.52 Aligned_cols=294 Identities=47% Similarity=0.860 Sum_probs=275.1
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002749 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
++++|+.+++.+.+++. ....|++++|.+||++|+++|++||+++++.+|++||||||||+.+|+++|+..++++.+
T Consensus 11 ~~~~i~~~~~~~~~~~~--~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~- 87 (320)
T PTZ00480 11 VDNIIERLLSVRGSKPG--KNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPES- 87 (320)
T ss_pred HHHHHHHHHhccccCcc--ccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcc-
Confidence 68899999987765532 224689999999999999999999999999999999999999999999999999998876
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002749 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|||||||||||++++||+.+|+++|+.+|.+|++||||||...++..|||..||..+|+ ..+|..++++|
T Consensus 88 -----~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~----~~l~~~~~~~F 158 (320)
T PTZ00480 88 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYT----IKLWKTFTDCF 158 (320)
T ss_pred -----eEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcC----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999994 46999999999
Q ss_pred cCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHH
Q 002749 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
++||+||+|++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 159 ~~LPlaAiI~~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWSDP~~--~~~~~~~s~RG~g-~~FG~~~~ 234 (320)
T PTZ00480 159 NCLPVAALIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDTG-LLCDLLWSDPDK--DVQGWADNERGVS-YVFSQEIV 234 (320)
T ss_pred HhccHhheecCcEEEEcCCcCcccCCHHHHhcccCCCCCCccc-hhhheeecCccc--ccCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887654 899999999985 3578999999999 68999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCcceEEeEEecCCCCC
Q 002749 771 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 840 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 840 (885)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++.+.++.|.|.+..
T Consensus 235 ~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~p~~~~ 304 (320)
T PTZ00480 235 QVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQG 304 (320)
T ss_pred HHHHHhCCCcEEEEcCccccCceEEeCCCcEEEEeCCcccCCCCCccEEEEEECCCCcEeEEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876543
No 5
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=1.8e-68 Score=576.51 Aligned_cols=285 Identities=33% Similarity=0.587 Sum_probs=256.4
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecC----CeEEEecCCCCHHHHHHHHHHhCC
Q 002749 530 LHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGF 605 (885)
Q Consensus 530 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~----~i~vvGDiHG~~~~L~~il~~~g~ 605 (885)
.++++|+.+++.. .|+++++.+||++|+++|++||+++++.. |++|||||||||.+|+++|+..|+
T Consensus 6 ~~~~~i~~~~~~~----------~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~ 75 (321)
T cd07420 6 HIDALIEAFKEKQ----------LLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGL 75 (321)
T ss_pred HHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCC
Confidence 3688999998753 47899999999999999999999999986 899999999999999999999998
Q ss_pred CCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhh
Q 002749 606 PSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTR 685 (885)
Q Consensus 606 ~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~ 685 (885)
|+... +|||||||||||++|+||+.+|++||++||++|++||||||.+.++..|||.+||..+|+.. ...+|+.
T Consensus 76 ~~~~~-----~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~-~~~l~~~ 149 (321)
T cd07420 76 PSPEN-----PYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLH-GKKILRL 149 (321)
T ss_pred CCccc-----eEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCcc-HHHHHHH
Confidence 86532 79999999999999999999999999999999999999999999999999999999999753 4679999
Q ss_pred hhhhccCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCccc-----CC---------------------CCcchhcc
Q 002749 686 FNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITM-----DA---------------------GSIILMDL 739 (885)
Q Consensus 686 ~~~~f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~-----~~---------------------~~~~~~dl 739 (885)
++++|++||+||+|++++|||||||++ ..++++|+.++|+... +. ...+++|+
T Consensus 150 ~~~~F~~LPlaaii~~~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 228 (321)
T cd07420 150 LEDVFSWLPLATIIDNKILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDI 228 (321)
T ss_pred HHHHHHhCCceEEEcCCEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhhee
Confidence 999999999999999999999999997 5799999999884211 11 01367899
Q ss_pred ccCCCCCCCCCCCcccCCCCCceeEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCeEE
Q 002749 740 LWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGA 819 (885)
Q Consensus 740 lWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga 819 (885)
|||||.+. ...|.+++||.| +.||++++++||++|++++||||||++++||+++++++|||||||||||+..+|+||
T Consensus 229 LWSDP~~~--~~~~~~~~RG~g-~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~ga 305 (321)
T cd07420 229 LWSDPKAQ--KGCKPNTFRGGG-CYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGA 305 (321)
T ss_pred eecCCccC--CCCCccCCCCCc-cccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccEE
Confidence 99999853 233666789999 689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCcceEEeEEe
Q 002749 820 ILVVGRGLVVVPKLI 834 (885)
Q Consensus 820 ~l~~~~~~~~~~~~~ 834 (885)
+|.+++++.+.++.+
T Consensus 306 vl~i~~~~~~~f~~~ 320 (321)
T cd07420 306 YIKLGPDLTPHFVQY 320 (321)
T ss_pred EEEECCCCceeEEEe
Confidence 999999988877665
No 6
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=5.4e-68 Score=577.42 Aligned_cols=303 Identities=74% Similarity=1.267 Sum_probs=279.4
Q ss_pred HHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCC--CC
Q 002749 534 IISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTA--GD 611 (885)
Q Consensus 534 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~--~~ 611 (885)
+|++|++|+.|+++...++.|+++++.+||++|+++|++||+++++.+|++|||||||||++|+++|+.+++++.. ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~ 80 (311)
T cd07419 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGD 80 (311)
T ss_pred ChHHhcCcccccCccccccCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCC
Confidence 4788999999999888888999999999999999999999999999999999999999999999999999988652 12
Q ss_pred cceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCC--Cchhhhhhhhhh
Q 002749 612 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGEN--DGIWAWTRFNQL 689 (885)
Q Consensus 612 ~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~--~~~~~~~~~~~~ 689 (885)
....+|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||..||..+|+.. .+..+|..++++
T Consensus 81 ~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~ 160 (311)
T cd07419 81 IEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRL 160 (311)
T ss_pred CcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHH
Confidence 222379999999999999999999999999999999999999999999999999999999999762 235799999999
Q ss_pred ccCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCC---CCCce-eEe
Q 002749 690 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNA---RGPGL-VTF 765 (885)
Q Consensus 690 f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~---rg~~~-~~f 765 (885)
|++||++++++++++||||||+|.+.++++|+.+.||...+...++++|+|||||...+...+|.+|+ ||.|. +.|
T Consensus 161 f~~LPl~avi~~~~l~vHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~f 240 (311)
T cd07419 161 FEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKF 240 (311)
T ss_pred HHhCchhheecccEEEEccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeE
Confidence 99999999999999999999999999999999999998554444589999999999765567888887 99995 799
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCcceEEeEEecC
Q 002749 766 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 836 (885)
Q Consensus 766 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 836 (885)
|++++++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|++++++.++|++|+|
T Consensus 241 g~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i~~~~~~~~~~~~~ 311 (311)
T cd07419 241 GPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGRDLTIIPKLIHP 311 (311)
T ss_pred CHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 7
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=9.9e-68 Score=567.37 Aligned_cols=291 Identities=41% Similarity=0.778 Sum_probs=270.8
Q ss_pred hHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCC
Q 002749 529 GLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPST 608 (885)
Q Consensus 529 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~ 608 (885)
++++++|.++++...+. ......++.++|.+||++|+++|++||+++++.+|++||||||||+.+|+++|+.+++++.
T Consensus 2 ~~~~~~i~~~~~~~~~~--~~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~ 79 (294)
T PTZ00244 2 SLVQTLIEKMLTVKGNR--TQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPY 79 (294)
T ss_pred chHHHHHHHHHhcccCC--CccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCc
Confidence 35688899999865433 2234478999999999999999999999999999999999999999999999999999887
Q ss_pred CCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhh
Q 002749 609 AGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQ 688 (885)
Q Consensus 609 ~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~ 688 (885)
+ +|||||||||||++|+||+.+|+++|+.+|.++++||||||.+.++..|||.+|+..+|+ ..+|..+++
T Consensus 80 ~------~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~ 149 (294)
T PTZ00244 80 S------NYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYN----IKLFKAFTD 149 (294)
T ss_pred c------cEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhh----HHHHHHHHH
Confidence 6 899999999999999999999999999999999999999999999999999999999995 469999999
Q ss_pred hccCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHH
Q 002749 689 LFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPD 768 (885)
Q Consensus 689 ~f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~ 768 (885)
+|+.||++|++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++
T Consensus 150 ~f~~lPlaaii~~~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~ 225 (294)
T PTZ00244 150 VFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDRG-ILCDLLWADPED--EVRGFLESDRGVS-YLFGED 225 (294)
T ss_pred HHHhCchheEecCeeEEEcCCCCchhhHHHHhhhhccccCCCccc-hhheeeecCccc--ccCCCCcCCCCCc-cccCHH
Confidence 999999999999999999999999999999999999999887654 899999999985 3578999999999 789999
Q ss_pred HHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCcceEEeEEec
Q 002749 769 RVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIH 835 (885)
Q Consensus 769 ~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~ 835 (885)
++++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++++.++.|.
T Consensus 226 ~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~f~~~~ 292 (294)
T PTZ00244 226 IVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLIIP 292 (294)
T ss_pred HHHHHHHHcCCcEEEEcCccccCceEEcCCCeEEEEeCCccccCCCCceEEEEEECCCCcEeEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 8
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=1.4e-67 Score=565.20 Aligned_cols=283 Identities=42% Similarity=0.754 Sum_probs=267.2
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002749 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
++++|+.+++.. .|+++++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..++++.+
T Consensus 2 ~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~- 70 (285)
T cd07415 2 LDKWIEQLKKCE----------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDT- 70 (285)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCC-
Confidence 467888888643 478999999999999999999999999999999999999999999999999988766
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002749 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|||||||||||++++||+.+|++||+.+|.++++||||||.+.++..|||.+||..+|+. ..+|+.++++|
T Consensus 71 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~---~~l~~~~~~~f 142 (285)
T cd07415 71 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGN---ANVWKYCTDLF 142 (285)
T ss_pred -----eEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCc---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999964 36999999999
Q ss_pred cCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHH
Q 002749 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
++||++|++++++|||||||+|.+.++++|+.++||.+++..+ +++|+|||||.+. .+|.+|+||.| +.||++++
T Consensus 143 ~~lPlaaii~~~i~cvHgGi~p~~~~~~~i~~i~r~~~~~~~~-~~~dllWsDP~~~---~~~~~~~Rg~g-~~fg~~~~ 217 (285)
T cd07415 143 DYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQEVPHEG-PMCDLLWSDPDDI---EGWGISPRGAG-YLFGQDVV 217 (285)
T ss_pred HHhHHHhEeCCeEEEEcCCCCCCcccHHHhhcccCCCCCCCCC-CccceEecCCCcc---CCCCcCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887665 7899999999863 68999999999 78999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCcceEEeEEecCC
Q 002749 771 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPL 837 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~ 837 (885)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++++.++.|.|.
T Consensus 218 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i~~~~~~~~~~~~~~ 284 (285)
T cd07415 218 EEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAA 284 (285)
T ss_pred HHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998874
No 9
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=1.6e-67 Score=567.05 Aligned_cols=290 Identities=49% Similarity=0.900 Sum_probs=270.9
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002749 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
++++|+.+++.+.++. .....|+++++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..++++.+
T Consensus 2 ~~~~i~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~- 78 (293)
T cd07414 2 IDSIIERLLEVRGSRP--GKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPES- 78 (293)
T ss_pred HHHHHHHHHhccccCC--cccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcc-
Confidence 4678888888765543 2334689999999999999999999999999999999999999999999999999998776
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002749 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|||||||||||++++||+.+|+++|+.+|.++++||||||.+.++..|||..||..+|+ ..+|..++++|
T Consensus 79 -----~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~~f 149 (293)
T cd07414 79 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYN----IKLWKTFTDCF 149 (293)
T ss_pred -----eEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhh----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999984 46999999999
Q ss_pred cCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHH
Q 002749 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
++||++|++++++||||||++|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 150 ~~lPlaa~i~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~ 225 (293)
T cd07414 150 NCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQG-LLCDLLWSDPDK--DVQGWGENDRGVS-FTFGKDVV 225 (293)
T ss_pred HHhHHHHhhCCcEEEEccCCCcccCcHHHHhcccCCCCCCchh-hHhhhhccCccc--ccCCCccCCCCcc-eecCHHHH
Confidence 9999999999999999999999999999999999999877654 899999999986 3578999999999 68999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCcceEEeEEecC
Q 002749 771 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 836 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 836 (885)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++.+.++.|+|
T Consensus 226 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~~~~~~~ 291 (293)
T cd07414 226 AKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 291 (293)
T ss_pred HHHHHHcCCeEEEECCccccCeEEEeCCCcEEEEecCCcccCCCCceEEEEEECCCCcEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999998876
No 10
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=3.7e-67 Score=564.49 Aligned_cols=285 Identities=41% Similarity=0.769 Sum_probs=266.2
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002749 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
++++|+.+++.. .|+++++.+||++|+++|++||+++++.+|++||||||||+.+|+++|+..+.++..
T Consensus 3 ~~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~- 71 (303)
T PTZ00239 3 IDRHIATLLNGG----------CLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNA- 71 (303)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc-
Confidence 477888887642 478999999999999999999999999999999999999999999999999987765
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002749 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|||||||||||++++||+.+|+++|+.+|.++++||||||.+.++..|||.+|+..+|+.. .+|+.++++|
T Consensus 72 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~---~~~~~~~~~f 143 (303)
T PTZ00239 72 -----NYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNS---NPWRLFMDVF 143 (303)
T ss_pred -----eEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcCh---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999753 5899999999
Q ss_pred cCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHH
Q 002749 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
++||++|++++++|||||||+|.+.++++|+.++||.+++..+ .++|+|||||.+ ..+|.+|+||.| +.||++++
T Consensus 144 ~~LPlaaii~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~~~Rg~g-~~fg~~~~ 218 (303)
T PTZ00239 144 DCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEG-PFCDLMWSDPEE---VEYWAVNSRGAG-YLFGAKVT 218 (303)
T ss_pred HhCchheEEcCeEEEEcCccCcccccHhhhccccCCCCCCCCC-CceeeEecCccc---cCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887765 789999999985 468999999999 68999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecC-CeEEEEeccccccCCCCCeEEEEEEcCcceEEeEEecCCCC
Q 002749 771 SDFCKRNKLQLIIRAHECVMDGFERFAQ-GQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPP 839 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~-~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~ 839 (885)
++||++||+++||||||++++||+++++ ++|||||||||||+..+|+||+|.+++++++.++.|.|.+.
T Consensus 219 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i~~~~~~~~~~~~~~~~ 288 (303)
T PTZ00239 219 KEFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPE 288 (303)
T ss_pred HHHHHHCCCcEEEEcChhhccceEEEeCCCeEEEEECCCcccCCCCceEEEEEECCCCcEeeEEeeCCCc
Confidence 9999999999999999999999998765 45999999999999999999999999999999999988754
No 11
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=6.8e-66 Score=558.62 Aligned_cols=291 Identities=35% Similarity=0.639 Sum_probs=268.5
Q ss_pred CchHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCC----eEEEecCCCCHHHHHHHHHH
Q 002749 527 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAP----VKVFGDLHGQFGDLMRLFDE 602 (885)
Q Consensus 527 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~----i~vvGDiHG~~~~L~~il~~ 602 (885)
+..+++++++.+.+.+ .|+.+++.+||++|.++|++||+++++..| ++|||||||||.+|+++|+.
T Consensus 12 ~~~~~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~ 81 (316)
T cd07417 12 TLEFVKEMIEWFKDQK----------KLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFEL 81 (316)
T ss_pred CHHHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHh
Confidence 4567889999988753 478999999999999999999999999876 99999999999999999999
Q ss_pred hCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhh
Q 002749 603 YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWA 682 (885)
Q Consensus 603 ~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~ 682 (885)
.|+++..+ +|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||..|+..+|+ ..+
T Consensus 82 ~g~~~~~~-----~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~----~~l 152 (316)
T cd07417 82 NGLPSETN-----PYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYN----EQM 152 (316)
T ss_pred cCCCCccC-----eEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhccc----HHH
Confidence 99886542 799999999999999999999999999999999999999999999999999999999985 469
Q ss_pred hhhhhhhccCCceEEEEcCeEEEecCCC-CCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCc
Q 002749 683 WTRFNQLFNCLPLAALIEKKIICMHGGI-GRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPG 761 (885)
Q Consensus 683 ~~~~~~~f~~LP~~~~i~~~il~vHgGi-~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~ 761 (885)
|+.+.++|++||+++++++++||||||| ++...++++|++++||.+.+..+ +++|+|||||.+ ..+|.+|+||.|
T Consensus 153 ~~~~~~~f~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~s~Rg~g 228 (316)
T cd07417 153 FDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSG-LMCELLWSDPQP---QPGRSPSKRGVG 228 (316)
T ss_pred HHHHHHHHHhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccc-cceeeeecCCCC---CCCCCccCCCCc
Confidence 9999999999999999999999999999 56789999999999998776554 899999999985 358999999999
Q ss_pred eeEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcC-cceEEeEEecCCCCC
Q 002749 762 LVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGR-GLVVVPKLIHPLPPP 840 (885)
Q Consensus 762 ~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~-~~~~~~~~~~~~~~~ 840 (885)
+.||++++++||++||+++||||||++++||+++++++|+|||||||||+..+|+||+|.|++ ++++.++.|.+.+..
T Consensus 229 -~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~ 307 (316)
T cd07417 229 -CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHP 307 (316)
T ss_pred -eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCC
Confidence 699999999999999999999999999999999999999999999999999999999999999 899999999877654
Q ss_pred C
Q 002749 841 L 841 (885)
Q Consensus 841 ~ 841 (885)
.
T Consensus 308 ~ 308 (316)
T cd07417 308 N 308 (316)
T ss_pred C
Confidence 3
No 12
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=3.8e-65 Score=552.33 Aligned_cols=286 Identities=37% Similarity=0.649 Sum_probs=261.0
Q ss_pred HHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCC
Q 002749 532 KKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGD 611 (885)
Q Consensus 532 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~ 611 (885)
+-+++.+.+.. .|+++++.+||++|+++|++||+++++.+|++||||||||+.||.++|+..+.++.+
T Consensus 4 ~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~-- 71 (305)
T cd07416 4 DVLKAHFMREG----------RLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANT-- 71 (305)
T ss_pred HHHHHHHHcCC----------CCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc--
Confidence 45666666543 478999999999999999999999999999999999999999999999999988766
Q ss_pred cceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhcc
Q 002749 612 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFN 691 (885)
Q Consensus 612 ~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~ 691 (885)
+|||||||||||++|+||+.+|++||+.+|.++++||||||.+.++..|||..|+..+|+ ..+|..++++|+
T Consensus 72 ----~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~----~~l~~~~~~~f~ 143 (305)
T cd07416 72 ----RYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS----ERVYDACMEAFD 143 (305)
T ss_pred ----eEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhcc----HHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999884 469999999999
Q ss_pred CCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCC----CCcccC-CCCCceeEeC
Q 002749 692 CLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSI----EGLRPN-ARGPGLVTFG 766 (885)
Q Consensus 692 ~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~----~~~~~n-~rg~~~~~fg 766 (885)
.||+++++++++|||||||+|.+.++++|++++||.+.+..+ +++|+|||||...+.. .+|.+| +||.| +.||
T Consensus 144 ~LPlaaii~~~i~~vHGGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g-~~fG 221 (305)
T cd07416 144 CLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFG-PMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCS-YFYS 221 (305)
T ss_pred hccceeEEcCCEEEEcCCCCcccccHHHhcccCCCCCCCCCC-cceeeeecCcccccccccccccccccCCCCCc-eecC
Confidence 999999999999999999999999999999999998877655 7899999999864321 358776 89999 7999
Q ss_pred HHHHHHHHHHcCCeEEEEeccccccceEEecCC------eEEEEeccccccCCCCCeEEEEEEcCcceEEeEEecCCCCC
Q 002749 767 PDRVSDFCKRNKLQLIIRAHECVMDGFERFAQG------QLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 840 (885)
Q Consensus 767 ~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 840 (885)
++++++||++||+++||||||++++||++++++ +|||||||||||+..+|+||+|.++++. +.++.+.+.|-.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i~~~~-~~~~~~~~~~~~ 300 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPHP 300 (305)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEEcCCc-ceEEEecCCCCC
Confidence 999999999999999999999999999998887 9999999999999999999999999985 688888776543
No 13
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=5.3e-65 Score=544.05 Aligned_cols=269 Identities=48% Similarity=0.880 Sum_probs=255.5
Q ss_pred cCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHH
Q 002749 554 LDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLET 633 (885)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~ev 633 (885)
++++++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..+.++.+ +|||||||||||++++||
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~------~~vfLGD~VDrG~~s~e~ 74 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDT------NYVFLGDYVDRGPFSIEV 74 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCc------eEEEeCCccCCCCChHHH
Confidence 35789999999999999999999999999999999999999999999999987766 899999999999999999
Q ss_pred HHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhccCCceEEEEcCeEEEecCCCCCC
Q 002749 634 ITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRS 713 (885)
Q Consensus 634 l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~~~ 713 (885)
+.+|++||+.+|.++++||||||.+.++..|||.+|+..+|+ ..+|+.+.++|++||+++++++++|||||||+|.
T Consensus 75 l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~----~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~ 150 (271)
T smart00156 75 ILLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYG----EEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPD 150 (271)
T ss_pred HHHHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcC----HHHHHHHHHHHhhChhheEEcCeEEEEecCCCCc
Confidence 999999999999999999999999999999999999999985 4799999999999999999999999999999999
Q ss_pred CcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHHHHHHHHcCCeEEEEeccccccce
Q 002749 714 IHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGF 793 (885)
Q Consensus 714 ~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~ 793 (885)
+.++++|+.++||.+.+... +++|+|||||.. ...+|.+|+||.| +.||++++++||++||+++||||||++++||
T Consensus 151 ~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~ 226 (271)
T smart00156 151 LTTLDDIRKLKRPQEPPDEG-LLIDLLWSDPDQ--PVDGFQPSIRGAS-YYFGPDAVDEFLKKNNLKLIIRAHQVVDDGY 226 (271)
T ss_pred cCCHHHHhcccCCCCCCchh-hhhheeecCCCc--ccCCCccCCCCCc-cccCHHHHHHHHHHCCCeEEEecCcccCCcE
Confidence 99999999999998776654 899999999974 3578999999999 6899999999999999999999999999999
Q ss_pred EEecCCeEEEEeccccccCCCCCeEEEEEEcCcceEEeEEecC
Q 002749 794 ERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 836 (885)
Q Consensus 794 ~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 836 (885)
+++++++|||||||||||+..+|+||+|.+++++.+.++.+.|
T Consensus 227 ~~~~~~~~~TvfSa~~y~~~~~n~~a~~~i~~~~~~~~~~~~~ 269 (271)
T smart00156 227 EFFHDRKLVTIFSAPNYCGRFGNKAAVLKVDKDLKLSFEQFKP 269 (271)
T ss_pred EEecCCcEEEEECCcccccCCCceEEEEEECCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999988875
No 14
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=1.2e-62 Score=537.61 Aligned_cols=298 Identities=34% Similarity=0.588 Sum_probs=257.3
Q ss_pred chHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeec----CCeEEEecCCCCHHHHHHHHHHh
Q 002749 528 QGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDEY 603 (885)
Q Consensus 528 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~----~~i~vvGDiHG~~~~L~~il~~~ 603 (885)
.+..+.+|+.+.....--.+......|+.+++.+||++|+++|++||+++++. .|++||||||||+.+|+++|+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~~ 88 (377)
T cd07418 9 NEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDA 88 (377)
T ss_pred HHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHHh
Confidence 34567778777544221123333456899999999999999999999999998 89999999999999999999999
Q ss_pred CCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhh
Q 002749 604 GFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAW 683 (885)
Q Consensus 604 g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~ 683 (885)
|+++.+. +|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||..|+..+|+.. +..+|
T Consensus 89 g~~~~~~-----~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~-~~~l~ 162 (377)
T cd07418 89 GFPDQNR-----FYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDK-GKHVY 162 (377)
T ss_pred CCCCCCc-----eEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCch-HHHHH
Confidence 9887542 69999999999999999999999999999999999999999999999999999999999754 45799
Q ss_pred hhhhhhccCCceEEEEcCeEEEecCCC---------------------------CCCCcCHHHhhcccCCc-ccCCCC--
Q 002749 684 TRFNQLFNCLPLAALIEKKIICMHGGI---------------------------GRSIHSVEQIEKLERPI-TMDAGS-- 733 (885)
Q Consensus 684 ~~~~~~f~~LP~~~~i~~~il~vHgGi---------------------------~~~~~~~~~i~~~~rp~-~~~~~~-- 733 (885)
++++++|++||+++++++++||||||| +|.+.++++|+.++||. +.+..+
T Consensus 163 ~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~ 242 (377)
T cd07418 163 RKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSN 242 (377)
T ss_pred HHHHHHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCcc
Confidence 999999999999999999999999999 45578999999999985 444332
Q ss_pred cchhccccCCCCCCCCCCCcccC-CCCCceeEeCHHHHHHHHHHcCCeEEEEeccc------------cccceEEecC--
Q 002749 734 IILMDLLWSDPTENDSIEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHEC------------VMDGFERFAQ-- 798 (885)
Q Consensus 734 ~~~~dllWsdP~~~~~~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~------------~~~G~~~~~~-- 798 (885)
.+++|||||||.. ..+|.+| .||.| +.||++++++||++|++++||||||+ +++||+++++
T Consensus 243 ~i~~dlLWSDP~~---~~g~~~~~~RG~g-~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~ 318 (377)
T cd07418 243 LIPGDVLWSDPSL---TPGLSPNKQRGIG-LLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVE 318 (377)
T ss_pred ccceeeEeeCCcc---CCCCCccCCCCCc-cccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccCC
Confidence 2578999999986 3577777 79999 68999999999999999999999996 7899999887
Q ss_pred -CeEEEEecccccc------CCCCCeEEEEEEcCcc--eEEeEEec
Q 002749 799 -GQLITLFSATNYC------GTANNAGAILVVGRGL--VVVPKLIH 835 (885)
Q Consensus 799 -~~~itvfSa~~y~------~~~~n~ga~l~~~~~~--~~~~~~~~ 835 (885)
++||||||||||| +..+|+||+++++.+- ...++.+.
T Consensus 319 ~~~liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~ 364 (377)
T cd07418 319 SGKLITLFSAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFE 364 (377)
T ss_pred CCcEEEEecCCccccccccccccCcceEEEEEecCCCCCccceEee
Confidence 9999999999999 5789999999996643 44555554
No 15
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-63 Score=492.57 Aligned_cols=286 Identities=41% Similarity=0.722 Sum_probs=270.3
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002749 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
++..|..|.+.+ .+++.++..||+.|+++|.+|.++..++.|++||||+||||+||+++|+..|..++.
T Consensus 20 vd~~ie~L~~ck----------~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdt- 88 (319)
T KOG0371|consen 20 VDPWIEQLYKCK----------PLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDT- 88 (319)
T ss_pred cccchHHHHhcC----------CCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCc-
Confidence 466778887764 578889999999999999999999999999999999999999999999888887766
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhc
Q 002749 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|+|+|||||||++|.|++.+|.++|++||++|.+||||||.+.+...|||++||++|||.. .+|+.|.++|
T Consensus 89 -----nylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~a---nvw~~Ftdlf 160 (319)
T KOG0371|consen 89 -----NYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNA---NVWKYFTDLF 160 (319)
T ss_pred -----ceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccc---cchHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999864 6999999999
Q ss_pred cCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHH
Q 002749 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
+++|+.|+|+++|||+|||++|++.+++.++.+.|-.++|.++ .+||||||||++ ..||..++||.| +.||++..
T Consensus 161 dy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evpheg-pmcDlLwsdpdd---r~gwg~sprgag-~tfg~di~ 235 (319)
T KOG0371|consen 161 DYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEG-PMCDLLWSDPDD---RCGWGISPRGAG-YTFGQDIS 235 (319)
T ss_pred hccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCC-ChhheeccCccc---CCCCCCCCCCCC-cccchhhH
Confidence 9999999999999999999999999999999999988888877 688999999985 689999999999 79999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCcceEEeEEecCCCCC
Q 002749 771 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 840 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 840 (885)
++|-.+||+++|-|+||.+++||.+.+...++|||||||||+.++|.+|+|.+++.+...+..|.|.|..
T Consensus 236 ~~fn~~n~lslisRahqlvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~d~~~~~~f~q~~psp~k 305 (319)
T KOG0371|consen 236 EQFNHKNGLSLISRAHQLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMERDDTKNYDFLQFDPSPRK 305 (319)
T ss_pred HHhhccCCchHhHHHHHHHhcccceeeecceeEEccCCchhhccccHHHHhhhhhccCcceEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986544
No 16
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=1.1e-62 Score=506.86 Aligned_cols=263 Identities=39% Similarity=0.687 Sum_probs=246.1
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHH
Q 002749 553 FLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLE 632 (885)
Q Consensus 553 ~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~e 632 (885)
.|+++...+|+.++..+|++|++++++++||.|||||||||.||+++|+..|.|... +|+|||||||||.+|+|
T Consensus 60 rl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t------~YLFLGDYVDRGyFSiE 133 (517)
T KOG0375|consen 60 RLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANT------RYLFLGDYVDRGYFSIE 133 (517)
T ss_pred chhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccc------eeEeeccccccceeeee
Confidence 378899999999999999999999999999999999999999999999998888766 99999999999999999
Q ss_pred HHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhccCCceEEEEcCeEEEecCCCCC
Q 002749 633 TITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGR 712 (885)
Q Consensus 633 vl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~~ 712 (885)
|+.+|.+||+.||+.++|||||||++.+...|.|..||..||.+ .+|+.+.+.|++||+||+.++++||||||+||
T Consensus 134 CvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse----~vYdaCmesFd~LPLAAlmNqQflCVHGGlSP 209 (517)
T KOG0375|consen 134 CVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE----RVYDACMESFDCLPLAALMNQQFLCVHGGLSP 209 (517)
T ss_pred hHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccH----HHHHHHHHHhccchHHHHhcCceEEecCCCCc
Confidence 99999999999999999999999999999999999999999954 69999999999999999999999999999999
Q ss_pred CCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCC----CCCcccC-CCCCceeEeCHHHHHHHHHHcCCeEEEEecc
Q 002749 713 SIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDS----IEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHE 787 (885)
Q Consensus 713 ~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~----~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~ 787 (885)
.+.+++||+++.|..++|..+ ++||||||||.++-. .+.|.+| .||++ |.|...++.+||++|||--|||+||
T Consensus 210 Ei~tl~DIr~l~RF~EpPa~G-pmCDLLWsDPlEdfgnek~~e~f~hNsvRGCS-yfysy~A~C~FLq~nnLLSIiRAHE 287 (517)
T KOG0375|consen 210 EIHTLDDIRKLDRFKEPPAFG-PMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCS-YFYSYPAVCEFLQNNNLLSIIRAHE 287 (517)
T ss_pred ccccHHHHHhhhhccCCCccC-cchhhhccChhhhccccccccccccCcccccc-ceechHHHHHHHHhCCchhhhhhhh
Confidence 999999999999999999877 899999999986422 2456666 79998 7899999999999999999999999
Q ss_pred ccccceEEecCC------eEEEEeccccccCCCCCeEEEEEEcCcc
Q 002749 788 CVMDGFERFAQG------QLITLFSATNYCGTANNAGAILVVGRGL 827 (885)
Q Consensus 788 ~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~ga~l~~~~~~ 827 (885)
.+..||..+... .||||||||||-+.++|++|||.-.++.
T Consensus 288 AQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnNV 333 (517)
T KOG0375|consen 288 AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV 333 (517)
T ss_pred hhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhccc
Confidence 999999977665 4899999999999999999999987764
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-53 Score=443.83 Aligned_cols=283 Identities=33% Similarity=0.606 Sum_probs=249.7
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeec----CCeEEEecCCCCHHHHHHHHHHhCCC
Q 002749 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDEYGFP 606 (885)
Q Consensus 531 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~----~~i~vvGDiHG~~~~L~~il~~~g~~ 606 (885)
++.+|+.+-.. ..|....+..|+.+|+++|++-|++-+++ ..|.||||+||.++||+-||-+.|+|
T Consensus 121 i~~lieaFk~k----------q~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlP 190 (631)
T KOG0377|consen 121 IDLLIEAFKKK----------QRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLP 190 (631)
T ss_pred HHHHHHHHHHh----------hhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCC
Confidence 46666665433 25788899999999999999999999876 46999999999999999999999999
Q ss_pred CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhh
Q 002749 607 STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRF 686 (885)
Q Consensus 607 ~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~ 686 (885)
+.++ .|||.||+||||.+|+|||++|+++-+.||..+||-|||||...+|..|||..|...+|... +..+..-+
T Consensus 191 S~~n-----pYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~-~k~Ilr~l 264 (631)
T KOG0377|consen 191 SSSN-----PYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRH-GKRILRFL 264 (631)
T ss_pred CCCC-----CeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhc-ccHHHHHH
Confidence 9875 79999999999999999999999999999999999999999999999999999999999876 67888899
Q ss_pred hhhccCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCccc-----CC----------------CCcchhccccCCCC
Q 002749 687 NQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITM-----DA----------------GSIILMDLLWSDPT 745 (885)
Q Consensus 687 ~~~f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~-----~~----------------~~~~~~dllWsdP~ 745 (885)
.++|.|||++.+|+.+||+||||||.. ++++-|.+|+|-..+ |. +-+-+.|+|||||.
T Consensus 265 eevy~WLPi~tiid~~ilvvHGGiSd~-Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~ 343 (631)
T KOG0377|consen 265 EEVYRWLPIGTIIDSRILVVHGGISDS-TDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQ 343 (631)
T ss_pred HHHHHhcchhhhcccceEEEecCcccc-hhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCcc
Confidence 999999999999999999999999976 677777777663210 10 11357899999998
Q ss_pred CCCCCCCcccC-CCCCceeEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEc
Q 002749 746 ENDSIEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVG 824 (885)
Q Consensus 746 ~~~~~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~ 824 (885)
. ..|..|| -||.| ++||+|++.+||++++++++||+|||.++|||+.++++|+|||||+||.....|+||++.+.
T Consensus 344 ~---~~GC~pNt~RGgG-~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAYikl~ 419 (631)
T KOG0377|consen 344 A---TMGCVPNTLRGGG-CYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAYIKLG 419 (631)
T ss_pred c---ccCCCcccccCCc-ceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceEEEeC
Confidence 6 3678888 69999 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEeEEe
Q 002749 825 RGLVVVPKLI 834 (885)
Q Consensus 825 ~~~~~~~~~~ 834 (885)
+.++-.+...
T Consensus 420 ~~~~PhfvQY 429 (631)
T KOG0377|consen 420 NQLTPHFVQY 429 (631)
T ss_pred CCCCchHHHH
Confidence 8876544333
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=2.5e-46 Score=407.27 Aligned_cols=274 Identities=38% Similarity=0.664 Sum_probs=250.0
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceeeecCC----eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCC
Q 002749 553 FLDSYEVGELCYAAEQIFMQEPTVLQLRAP----VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ 628 (885)
Q Consensus 553 ~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~----i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~ 628 (885)
.+...-...|+..+..+++++|+++++..| +.|+||+|||+.|++++|+..|.|+... .|+|.||+||||.
T Consensus 182 ~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~-----~ylfngdfv~rgs 256 (476)
T KOG0376|consen 182 KLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN-----PYLFNGDFVDRGS 256 (476)
T ss_pred ccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc-----cccccCceeeecc
Confidence 355566778999999999999999998754 8999999999999999999999998764 8999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhccCCceEEEEcCeEEEecC
Q 002749 629 HSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHG 708 (885)
Q Consensus 629 ~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHg 708 (885)
.|.|++..+++.|+.+|+++|++|||||...++..|||..|+..+|.+ ..+..+.++|.+||++.+|+++++.+||
T Consensus 257 ~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte----~~~~~f~~~f~~LPl~~~i~~~~~~~hg 332 (476)
T KOG0376|consen 257 WSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTE----EMFNLFSEVFIWLPLAHLINNKVLVMHG 332 (476)
T ss_pred cceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHH----HHHHhhhhhhccccchhhhcCceEEEec
Confidence 999999999999999999999999999999999999999999999965 4677777999999999999999999999
Q ss_pred CCC-CCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHHHHHHHHcCCeEEEEecc
Q 002749 709 GIG-RSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHE 787 (885)
Q Consensus 709 Gi~-~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~ 787 (885)
|+. +.-.+++||++|.|+...+..+ .++|+|||||.. ..|..++.||.| ..||+|+.++||+.|++++|||+||
T Consensus 333 glf~~~~v~l~d~r~i~r~~~~~~~~-~~~~~lws~pq~---~~g~s~S~r~~g-~~fG~d~t~~f~~~n~l~~i~rshe 407 (476)
T KOG0376|consen 333 GLFSPDGVTLEDFRNIDRFEQPPEEG-LMCELLWSDPQP---ANGRSPSKRGVG-LQFGPDVTERFLQDNNLDKIIRSHE 407 (476)
T ss_pred CcCCCCCccHHHHHhhhhccCCcccc-cccccccCCCcc---ccCCCccccCce-eeeCCCchhhHHhhcchHHHhhccc
Confidence 985 4557899999999995555444 899999999986 478999999999 6899999999999999999999999
Q ss_pred ccccceEEecCCeEEEEeccccccCCCCCeEEEEEEc-CcceEEeEEecCCCCC
Q 002749 788 CVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVG-RGLVVVPKLIHPLPPP 840 (885)
Q Consensus 788 ~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~-~~~~~~~~~~~~~~~~ 840 (885)
+.+.||++.++|+|+|||||||||...+|.||++.++ ++++..+..|.++|-.
T Consensus 408 ~~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~ 461 (476)
T KOG0376|consen 408 VKDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHP 461 (476)
T ss_pred cCCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCC
Confidence 9999999999999999999999999999999999998 6788888888776644
No 19
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.1e-36 Score=353.53 Aligned_cols=304 Identities=22% Similarity=0.334 Sum_probs=243.3
Q ss_pred cceEecCCC---CCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCC
Q 002749 17 ETYWDTDED---APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA 93 (885)
Q Consensus 17 ~~~w~~~~~---~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 93 (885)
.++|....+ +|.||.+|+++++ +++||||||....... ..+++|+||+.+++|+.+++.
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~~------~~~iyv~GG~~~~~~~------------~~~~v~~yD~~~~~W~~~~~~ 211 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQV------GNKIYSFGGEFTPNQP------------IDKHLYVFDLETRTWSISPAT 211 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEEE------CCEEEEECCcCCCCCC------------eeCcEEEEECCCCEEEeCCCC
Confidence 378987654 6899999999999 8999999998543321 457899999999999998887
Q ss_pred CCCCc-ccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecC
Q 002749 94 GEPPS-PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGN 172 (885)
Q Consensus 94 g~~P~-~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~ 172 (885)
+..|. +|.+|++++++++|||+||... ...++++|+||+.+ .+|.++...+..|.+|++|+++++++ .||||||.
T Consensus 212 g~~P~~~~~~~~~v~~~~~lYvfGG~~~-~~~~ndv~~yD~~t--~~W~~l~~~~~~P~~R~~h~~~~~~~-~iYv~GG~ 287 (470)
T PLN02193 212 GDVPHLSCLGVRMVSIGSTLYVFGGRDA-SRQYNGFYSFDTTT--NEWKLLTPVEEGPTPRSFHSMAADEE-NVYVFGGV 287 (470)
T ss_pred CCCCCCcccceEEEEECCEEEEECCCCC-CCCCccEEEEECCC--CEEEEcCcCCCCCCCccceEEEEECC-EEEEECCC
Confidence 76665 4679999999999999999854 34679999999999 55999965555589999999988875 89999999
Q ss_pred CCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCC
Q 002749 173 DGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP 252 (885)
Q Consensus 173 ~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~ 252 (885)
++...++++++||+.++ +|+.+...+.+|.+|..|+++++ ++++|++||.++ ..++++|.||+.++ +|..+.
T Consensus 288 ~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g--~~~~dv~~yD~~t~---~W~~~~ 359 (470)
T PLN02193 288 SATARLKTLDSYNIVDK--KWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNG--CEVDDVHYYDPVQD---KWTQVE 359 (470)
T ss_pred CCCCCcceEEEEECCCC--EEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCC--CccCceEEEECCCC---EEEEec
Confidence 88888999999999999 99999877677888998888765 567999999754 34799999999977 555554
Q ss_pred --CCCCCccceeEEEEECCEEEEEcccCCCCC-----CccCCCcEEEEECCCCcEEEccCCcccCCCCCCCCCCCCCcCc
Q 002749 253 --GVAPSPRYQHAAVFVGARLHVTGGALRGGR-----AIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLEL 325 (885)
Q Consensus 253 --~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~-----~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p 325 (885)
+..|.+|..|+++.++++||||||...... .....+++++||+.+++|+.+..++.. ...|
T Consensus 360 ~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~------------~~~P 427 (470)
T PLN02193 360 TFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEE------------EETP 427 (470)
T ss_pred cCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCC------------CCCC
Confidence 456889999999999999999999854211 112256899999999999999865421 1235
Q ss_pred ccccceEEE--Ee-C-CEEEEEcCCCC-CCCCCceEEeeCCC
Q 002749 326 MRRCRHASA--SI-G-VRIYIYGGLKG-DILLDDFLVAENSP 362 (885)
Q Consensus 326 ~~R~~hs~~--~~-~-~~IyV~GG~~~-~~~~~D~~~ld~~~ 362 (885)
.+|..|+++ .+ + +.|++|||+++ +..++|+|.|++++
T Consensus 428 ~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 428 SSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 577666543 23 3 45999999974 68899999998764
No 20
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3e-36 Score=337.03 Aligned_cols=306 Identities=22% Similarity=0.282 Sum_probs=235.0
Q ss_pred cccceEecCCC----CCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEe
Q 002749 15 TLETYWDTDED----APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRI 90 (885)
Q Consensus 15 ~~~~~w~~~~~----~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 90 (885)
+.+..|.++.. +|.||.+|+++++ +++||||||...... ...+++|+||+.+++|+++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~------~~~iyv~GG~~~~~~------------~~~~~~~~yd~~~~~W~~~ 65 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVV------GDKLYSFGGELKPNE------------HIDKDLYVFDFNTHTWSIA 65 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEE------CCEEEEECCccCCCC------------ceeCcEEEEECCCCEEEEc
Confidence 45667887755 7999999999999 899999999864322 1468999999999999999
Q ss_pred cCCCCCCcc-cCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeec--CCCCCCccccEEEEECCcEEE
Q 002749 91 RPAGEPPSP-RAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ--GQGPGPRYGHVMDLVSQRYLV 167 (885)
Q Consensus 91 ~~~g~~P~~-R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~--~~~p~~R~~ht~~~~~~~~ly 167 (885)
++++..|.. +.+|++++++++||++||.... ..++++++||+.+ .+|..+... ...|.+|.+|+++++++ .+|
T Consensus 66 ~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t--~~W~~~~~~~~~~~p~~R~~~~~~~~~~-~iy 141 (341)
T PLN02153 66 PANGDVPRISCLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVK--NEWTFLTKLDEEGGPEARTFHSMASDEN-HVY 141 (341)
T ss_pred CccCCCCCCccCceEEEEECCEEEEECCCCCC-CccCcEEEEECCC--CEEEEeccCCCCCCCCCceeeEEEEECC-EEE
Confidence 887655543 5589999999999999998543 3578999999998 559988431 12388999999988876 899
Q ss_pred EEecCCCC------cccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCC-------CCcccc
Q 002749 168 SVSGNDGK------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS-------GAPLAD 234 (885)
Q Consensus 168 v~GG~~~~------~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~-------~~~l~d 234 (885)
||||.+.. ..++++++||+.++ +|..++.++..|.+|..|++++. ++++|++||.... ...+++
T Consensus 142 v~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~ 218 (341)
T PLN02153 142 VFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNA 218 (341)
T ss_pred EECCccCCCccCCCcccceEEEEECCCC--eEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCc
Confidence 99998643 24689999999999 99999888777788998987765 6679998886421 123688
Q ss_pred eEEEEcCCCCeeEEEeCC--CCCCCccceeEEEEECCEEEEEcccCCCC-----CCccCCCcEEEEECCCCcEEEccCCc
Q 002749 235 AYGLLMHRNGQWEWTLAP--GVAPSPRYQHAAVFVGARLHVTGGALRGG-----RAIEGEAAVAVLDTAAGVWLDRNGLV 307 (885)
Q Consensus 235 v~~~d~~~~~~W~w~~~~--~~~P~~R~~hs~~~~~~~l~V~GG~~~~~-----~~~~~~~~v~~yD~~t~~W~~v~~~~ 307 (885)
++.||+.++ +|..+. +..|.+|..|++++++++||||||..... ......+++++||+++++|+.+....
T Consensus 219 v~~yd~~~~---~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~ 295 (341)
T PLN02153 219 VQFFDPASG---KWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECG 295 (341)
T ss_pred eEEEEcCCC---cEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCC
Confidence 999999987 565554 45688999999999999999999974211 01112568999999999999987532
Q ss_pred ccCCCCCCCCCCCCCcCcccccceEEEEe--CCEEEEEcCCCC-CCCCCceEEeeCC
Q 002749 308 TSSRTSKGHGEHDPSLELMRRCRHASASI--GVRIYIYGGLKG-DILLDDFLVAENS 361 (885)
Q Consensus 308 ~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~IyV~GG~~~-~~~~~D~~~ld~~ 361 (885)
.+ ..|..|++++++.+ +++||||||+++ ...++|+|.+++.
T Consensus 296 ~~-------------~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 296 EP-------------AMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred CC-------------CCCCccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 21 11334555555554 348999999976 4788999998753
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.2e-36 Score=301.54 Aligned_cols=290 Identities=24% Similarity=0.385 Sum_probs=240.5
Q ss_pred eEecCCCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCC-----
Q 002749 19 YWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA----- 93 (885)
Q Consensus 19 ~w~~~~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~----- 93 (885)
+|+.-=+-=+.|.+|+++.+ +.+||-|||+..... +... ---||++++..+..|+++++.
T Consensus 3 ~WTVHLeGGPrRVNHAavaV------G~riYSFGGYCsGed-y~~~--------~piDVH~lNa~~~RWtk~pp~~~ka~ 67 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAV------GSRIYSFGGYCSGED-YDAK--------DPIDVHVLNAENYRWTKMPPGITKAT 67 (392)
T ss_pred eEEEEecCCcccccceeeee------cceEEecCCcccccc-cccC--------CcceeEEeeccceeEEecCccccccc
Confidence 45543233357899999999 899999999976543 1111 234799999999999999872
Q ss_pred -----CCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEE
Q 002749 94 -----GEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVS 168 (885)
Q Consensus 94 -----g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv 168 (885)
.-.|..|++|+.+.+++++|+.||.+......+-+|+||+.+ .+|.+..+.|..|.+|.||+++++++ .+||
T Consensus 68 i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t--~~W~~p~v~G~vPgaRDGHsAcV~gn-~Myi 144 (392)
T KOG4693|consen 68 IESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPET--NVWKKPEVEGFVPGARDGHSACVWGN-QMYI 144 (392)
T ss_pred ccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeecccc--ccccccceeeecCCccCCceeeEECc-EEEE
Confidence 125778999999999999999999988777889999999999 55999999999999999999999997 9999
Q ss_pred EecCCC--CcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCC--------CcccceEEE
Q 002749 169 VSGNDG--KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG--------APLADAYGL 238 (885)
Q Consensus 169 ~GG~~~--~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~--------~~l~dv~~~ 238 (885)
|||+.. +...+|++++|+.|. +|..+.+.+.+|.-|.+|+++++. +++|||||+.... ...+.+..+
T Consensus 145 FGGye~~a~~FS~d~h~ld~~Tm--tWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~l 221 (392)
T KOG4693|consen 145 FGGYEEDAQRFSQDTHVLDFATM--TWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMAL 221 (392)
T ss_pred ecChHHHHHhhhccceeEeccce--eeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEE
Confidence 999854 467899999999998 999999999999999999998875 8999999985432 223334455
Q ss_pred EcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCCcccCCCCCCCCC
Q 002749 239 LMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGE 318 (885)
Q Consensus 239 d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~ 318 (885)
|..+ +.|.-....++.|.+|..|++.+.+++||+|||+++.-.. ..+++|+||+.+..|..+.....
T Consensus 222 d~~T-~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~--HfndLy~FdP~t~~W~~I~~~Gk---------- 288 (392)
T KOG4693|consen 222 DLAT-GAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV--HFNDLYCFDPKTSMWSVISVRGK---------- 288 (392)
T ss_pred eccc-cccccCCCCCcCCCcccccceEEEcceEEEecccchhhhh--hhcceeecccccchheeeeccCC----------
Confidence 6654 4666555568889999999999999999999999765433 37899999999999999987644
Q ss_pred CCCCcCcccccceEEEEeCCEEEEEcCCC
Q 002749 319 HDPSLELMRRCRHASASIGVRIYIYGGLK 347 (885)
Q Consensus 319 ~~~~~~p~~R~~hs~~~~~~~IyV~GG~~ 347 (885)
.|.+|.++|+++.++++|+|||..
T Consensus 289 -----~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 289 -----YPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred -----CCCcccceeEEEECCEEEEecCCC
Confidence 366999999999999999999964
No 22
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.1e-32 Score=317.64 Aligned_cols=281 Identities=23% Similarity=0.318 Sum_probs=228.5
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCC----CcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCC
Q 002749 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLT----RKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGP 120 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t----~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~ 120 (885)
+++|+.|+|.....- ..-.+|.+++.+ ++|.++++.+..|.||++|++++++++||++||...
T Consensus 120 ~~~ivgf~G~~~~~~-------------~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~ 186 (470)
T PLN02193 120 GGKIVGFHGRSTDVL-------------HSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFT 186 (470)
T ss_pred CCeEEEEeccCCCcE-------------EeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCC
Confidence 889999999875431 112355567655 899999988888999999999999999999999753
Q ss_pred C-CCccCcEEEEEecCCcceEEEEeecCCCCC-CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCC
Q 002749 121 A-GHSTDDLYVLDLTNDKFKWHRVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNP 198 (885)
Q Consensus 121 ~-~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~-~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~ 198 (885)
. ....+++|+||+.+ .+|..+...+..|. +|.+|+++++++ .||||||.+....++++|+||+.++ +|+++.+
T Consensus 187 ~~~~~~~~v~~yD~~~--~~W~~~~~~g~~P~~~~~~~~~v~~~~-~lYvfGG~~~~~~~ndv~~yD~~t~--~W~~l~~ 261 (470)
T PLN02193 187 PNQPIDKHLYVFDLET--RTWSISPATGDVPHLSCLGVRMVSIGS-TLYVFGGRDASRQYNGFYSFDTTTN--EWKLLTP 261 (470)
T ss_pred CCCCeeCcEEEEECCC--CEEEeCCCCCCCCCCcccceEEEEECC-EEEEECCCCCCCCCccEEEEECCCC--EEEEcCc
Confidence 3 33557899999999 45998866555555 467899988886 8999999988778999999999999 9999988
Q ss_pred CCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCC--CCCCCccceeEEEEECCEEEEEcc
Q 002749 199 EGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP--GVAPSPRYQHAAVFVGARLHVTGG 276 (885)
Q Consensus 199 ~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~--~~~P~~R~~hs~~~~~~~l~V~GG 276 (885)
++..|.+|..|++++. +++||++||.+.. ..+++++.|++.++ +|..++ +..|.+|.+|++++++++|||+||
T Consensus 262 ~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~-~~~~~~~~yd~~t~---~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG 336 (470)
T PLN02193 262 VEEGPTPRSFHSMAAD-EENVYVFGGVSAT-ARLKTLDSYNIVDK---KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYG 336 (470)
T ss_pred CCCCCCCccceEEEEE-CCEEEEECCCCCC-CCcceEEEEECCCC---EEEeCCCCCCCCCCCCCcEEEEECCcEEEEEC
Confidence 8777899999988764 6789999998654 34789999999877 555554 345789999999999999999999
Q ss_pred cCCCCCCccCCCcEEEEECCCCcEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEeCCEEEEEcCCCC--------
Q 002749 277 ALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-------- 348 (885)
Q Consensus 277 ~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~~-------- 348 (885)
..+. ..+++++||+.+++|+.+..... .|.+|..|+++.++++||||||...
T Consensus 337 ~~g~-----~~~dv~~yD~~t~~W~~~~~~g~---------------~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 396 (470)
T PLN02193 337 FNGC-----EVDDVHYYDPVQDKWTQVETFGV---------------RPSERSVFASAAVGKHIVIFGGEIAMDPLAHVG 396 (470)
T ss_pred CCCC-----ccCceEEEECCCCEEEEeccCCC---------------CCCCcceeEEEEECCEEEEECCccCCccccccC
Confidence 7532 15789999999999999986532 1458999999999999999999753
Q ss_pred -CCCCCceEEeeCCCCCcCCC
Q 002749 349 -DILLDDFLVAENSPFQSDVN 368 (885)
Q Consensus 349 -~~~~~D~~~ld~~~~~~~~~ 368 (885)
...++|+|.+|..+.++...
T Consensus 397 ~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 397 PGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred ccceeccEEEEEcCcCEEEEc
Confidence 24568999999999888643
No 23
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.8e-33 Score=302.07 Aligned_cols=304 Identities=26% Similarity=0.470 Sum_probs=255.1
Q ss_pred ecCCCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCccc
Q 002749 21 DTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPR 100 (885)
Q Consensus 21 ~~~~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R 100 (885)
+..++.|-||.||-++++ ..-|++|||-.. ++.+++++|+..+++|..-...|+.|.+.
T Consensus 24 ~~tGPvPrpRHGHRAVai------kELiviFGGGNE---------------GiiDELHvYNTatnqWf~PavrGDiPpgc 82 (830)
T KOG4152|consen 24 QSTGPVPRPRHGHRAVAI------KELIVIFGGGNE---------------GIIDELHVYNTATNQWFAPAVRGDIPPGC 82 (830)
T ss_pred cccCCCCCccccchheee------eeeEEEecCCcc---------------cchhhhhhhccccceeecchhcCCCCCch
Confidence 346889999999999999 789999999542 26899999999999999999999999999
Q ss_pred CccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEee----cCCCCCCccccEEEEECCcEEEEEecCCC--
Q 002749 101 AAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVV----QGQGPGPRYGHVMDLVSQRYLVSVSGNDG-- 174 (885)
Q Consensus 101 ~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~----~~~~p~~R~~ht~~~~~~~~lyv~GG~~~-- 174 (885)
++|..++.+++||+|||.-+.+.+++|+|.+-... |.|.++.. .|.+|.||.||+.+++++ +-|+|||...
T Consensus 83 AA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasR--WeWkrlkp~~p~nG~pPCPRlGHSFsl~gn-KcYlFGGLaNds 159 (830)
T KOG4152|consen 83 AAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASR--WEWKRLKPKTPKNGPPPCPRLGHSFSLVGN-KCYLFGGLANDS 159 (830)
T ss_pred hhcceEecCceEEEEccEeeeccccchHHHhhhhh--hhHhhcCCCCCCCCCCCCCccCceeEEecc-EeEEeccccccc
Confidence 99999999999999999999999999998776655 99999864 577899999999999986 8899999532
Q ss_pred -------CcccCcEEEEecCCCC--eeEEEcCCCCCCCCCcccceEEEe--c---CCEEEEEccCCCCCCcccceEEEEc
Q 002749 175 -------KRVLSDAWALDTAQKP--YVWQRLNPEGDRPSARMYATASAR--S---DGMFLLCGGRDASGAPLADAYGLLM 240 (885)
Q Consensus 175 -------~~~~ndv~~~d~~t~~--~~W~~i~~~g~~P~~r~~hsa~~~--~---~g~l~i~GG~~~~~~~l~dv~~~d~ 240 (885)
..++||+|.+++.-++ ..|......|..|++|-.|+++++ . ..+||++||.+ +..+.|+|.+|.
T Consensus 160 eDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~--G~RLgDLW~Ldl 237 (830)
T KOG4152|consen 160 EDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS--GCRLGDLWTLDL 237 (830)
T ss_pred cCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc--cccccceeEEec
Confidence 2489999999887442 569999989999999999999987 2 23899999975 458999999999
Q ss_pred CCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCC---CC-------CCccCCCcEEEEECCCCcEEEccCCcccC
Q 002749 241 HRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALR---GG-------RAIEGEAAVAVLDTAAGVWLDRNGLVTSS 310 (885)
Q Consensus 241 ~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~---~~-------~~~~~~~~v~~yD~~t~~W~~v~~~~~~~ 310 (885)
.+- .|...+..+.+|.||.-|++..++++||||||+.- .. .--...+++-++|+.+..|..+-.-.
T Consensus 238 ~Tl-~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~--- 313 (830)
T KOG4152|consen 238 DTL-TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDT--- 313 (830)
T ss_pred cee-ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecc---
Confidence 976 77777778999999999999999999999999841 11 00112677889999999999876432
Q ss_pred CCCCCCCCCCCCcCcccccceEEEEeCCEEEEEcCCCC-------CCCCCceEEeeCCC
Q 002749 311 RTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-------DILLDDFLVAENSP 362 (885)
Q Consensus 311 ~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~~-------~~~~~D~~~ld~~~ 362 (885)
.+++..|.+|.+||+++++.++||.-|+|| +.-.-|+|.||+..
T Consensus 314 --------~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTek 364 (830)
T KOG4152|consen 314 --------LEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEK 364 (830)
T ss_pred --------ccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccC
Confidence 234457889999999999999999999885 23456999999765
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=3.2e-33 Score=295.30 Aligned_cols=326 Identities=26% Similarity=0.415 Sum_probs=256.3
Q ss_pred ceEecCCCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCC
Q 002749 18 TYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPP 97 (885)
Q Consensus 18 ~~w~~~~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 97 (885)
.......+.|.||.+.++++.+. .+-|++|||...++... -+.||+|+||+.++.|+++... +.|
T Consensus 55 ~~~e~~~~~PspRsn~sl~~nPe----keELilfGGEf~ngqkT----------~vYndLy~Yn~k~~eWkk~~sp-n~P 119 (521)
T KOG1230|consen 55 HVVETSVPPPSPRSNPSLFANPE----KEELILFGGEFYNGQKT----------HVYNDLYSYNTKKNEWKKVVSP-NAP 119 (521)
T ss_pred eeeeccCCCCCCCCCcceeeccC----cceeEEecceeecceeE----------EEeeeeeEEeccccceeEeccC-CCc
Confidence 34455667899999999998854 55899999987775432 3789999999999999999754 577
Q ss_pred cccCccEEEEEC-CEEEEEcCcC--CCC---CccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEec
Q 002749 98 SPRAAHAAAAVG-TMVVFQGGIG--PAG---HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSG 171 (885)
Q Consensus 98 ~~R~~hsa~~~~-~~lyv~GG~~--~~~---~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG 171 (885)
.||++|.++++. |.+++|||.- +.. .+..|+|+||+.+++ |.++... ..|.+|+||.|+++.+ +|++|||
T Consensus 120 ~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trk--weql~~~-g~PS~RSGHRMvawK~-~lilFGG 195 (521)
T KOG1230|consen 120 PPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRK--WEQLEFG-GGPSPRSGHRMVAWKR-QLILFGG 195 (521)
T ss_pred CCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccch--heeeccC-CCCCCCccceeEEeee-eEEEEcc
Confidence 899999999997 8999999963 211 457899999999955 9999774 4899999999999987 8999999
Q ss_pred CCC----CcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCC--------CCCcccceEEEE
Q 002749 172 NDG----KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA--------SGAPLADAYGLL 239 (885)
Q Consensus 172 ~~~----~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~--------~~~~l~dv~~~d 239 (885)
... ..++||||+||+++ |+|+++.+.|..|.||.+|++.+..++.||++||++. .+...+|+|.++
T Consensus 196 Fhd~nr~y~YyNDvy~FdLdt--ykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~ 273 (521)
T KOG1230|consen 196 FHDSNRDYIYYNDVYAFDLDT--YKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLK 273 (521)
T ss_pred eecCCCceEEeeeeEEEeccc--eeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeec
Confidence 743 34799999999998 5999999998899999999999998999999999853 256799999999
Q ss_pred cCC--CCeeEEEeCC--CCCCCccceeEEEEE-CCEEEEEcccCCCC-----CCccCCCcEEEEECCCCcEEEccCCccc
Q 002749 240 MHR--NGQWEWTLAP--GVAPSPRYQHAAVFV-GARLHVTGGALRGG-----RAIEGEAAVAVLDTAAGVWLDRNGLVTS 309 (885)
Q Consensus 240 ~~~--~~~W~w~~~~--~~~P~~R~~hs~~~~-~~~l~V~GG~~~~~-----~~~~~~~~v~~yD~~t~~W~~v~~~~~~ 309 (885)
... ..+|.|.++. ++.|.||.+.++++. +++-+.|||..+-. -...+.++++.||.+.++|++......+
T Consensus 274 p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~ 353 (521)
T KOG1230|consen 274 PEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKK 353 (521)
T ss_pred CCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhhccCC
Confidence 876 4589999986 788999999999998 66999999985411 1123478999999999999865433222
Q ss_pred CC-----CCC------------CCC---------------------------------------------CCCCCcCccc
Q 002749 310 SR-----TSK------------GHG---------------------------------------------EHDPSLELMR 327 (885)
Q Consensus 310 ~~-----~~~------------~~~---------------------------------------------~~~~~~~p~~ 327 (885)
+. .+. +.. +..+...+.+
T Consensus 354 S~~~~~r~~~Kd~~k~~~~~~~G~~tkd~e~~~v~k~v~~~~d~l~i~v~v~~~g~~~~p~s~~e~s~~~~~e~~~~~~p 433 (521)
T KOG1230|consen 354 SPATSRRRSRKDQEKELQRPTVGPNTKDLEVQAVDKAVCPTTDSLFIYVGVWEPGEADYPESEDEASREGDREPDEGEFP 433 (521)
T ss_pred CCccccccccccccccccCcccCCCcccccceecceeeeecCCceEEEeecCCCCCCCCcccccccccccCCCCCCCCCc
Confidence 11 000 000 1112355667
Q ss_pred ccceEEEEeCCEEEEEcCCC----CCCCCCceEEeeCCCCC
Q 002749 328 RCRHASASIGVRIYIYGGLK----GDILLDDFLVAENSPFQ 364 (885)
Q Consensus 328 R~~hs~~~~~~~IyV~GG~~----~~~~~~D~~~ld~~~~~ 364 (885)
|...-.++-.+.+||+||.- -...+.|+|.|++...+
T Consensus 434 r~d~~~~v~~G~~~i~gGi~ee~d~q~tl~dfyal~~hr~~ 474 (521)
T KOG1230|consen 434 RMDDELSVKVGVLYIGGGIFEERDWQPTLRDFYALDLHRNE 474 (521)
T ss_pred cCCCccCcccceEEecCCCcccccccchHHHHhhhhhhhhh
Confidence 87777777788999999952 23668899988877655
No 25
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=322.49 Aligned_cols=269 Identities=20% Similarity=0.320 Sum_probs=239.5
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCc
Q 002749 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~ 124 (885)
.+.||++||...... ..+.+.+||+.++.|..+..+ |.+|..+++++++++||++||.+.+...
T Consensus 284 ~~~l~~vGG~~~~~~-------------~~~~ve~yd~~~~~w~~~a~m---~~~r~~~~~~~~~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQ-------------SLRSVECYDPKTNEWSSLAPM---PSPRCRVGVAVLNGKLYVVGGYDSGSDR 347 (571)
T ss_pred CCeEEEECCCCCCCc-------------ccceeEEecCCcCcEeecCCC---CcccccccEEEECCEEEEEccccCCCcc
Confidence 679999999987332 578999999999999999855 4899999999999999999998756678
Q ss_pred cCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCC
Q 002749 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~ 204 (885)
++++|+||+.+++ |..+ ++++.+|.+++++++++ .+|++||.++...++++++||+.++ +|+.+.++ +.
T Consensus 348 l~~ve~YD~~~~~--W~~~---a~M~~~R~~~~v~~l~g-~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m---~~ 416 (571)
T KOG4441|consen 348 LSSVERYDPRTNQ--WTPV---APMNTKRSDFGVAVLDG-KLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPM---LT 416 (571)
T ss_pred cceEEEecCCCCc--eecc---CCccCccccceeEEECC-EEEEEeccccccccccEEEecCCCC--cccccCCC---Cc
Confidence 8999999999955 9998 89999999999999997 9999999999999999999999999 99999887 56
Q ss_pred CcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCc
Q 002749 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (885)
Q Consensus 205 ~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~ 284 (885)
+|..|++++ .+++||++||.+.....++.+..||+.++ +|...+.| +.+|.++++++++++||++||.++...
T Consensus 417 ~r~~~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M-~~~R~~~g~a~~~~~iYvvGG~~~~~~-- 489 (571)
T KOG4441|consen 417 RRSGHGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPM-NTRRSGFGVAVLNGKIYVVGGFDGTSA-- 489 (571)
T ss_pred ceeeeEEEE-ECCEEEEEcCcCCCccccceEEEEcCCCC---ceeecCCc-ccccccceEEEECCEEEEECCccCCCc--
Confidence 666666654 68899999999888778999999999999 99999888 699999999999999999999877222
Q ss_pred cCCCcEEEEECCCCcEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEeCCEEEEEcCCCCCCCCCceEEeeCCCCC
Q 002749 285 EGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQ 364 (885)
Q Consensus 285 ~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~~~~~~~D~~~ld~~~~~ 364 (885)
..++++||+++++|+.+.++.. +|..+++++++++||++||+++...++.+..+|-.+-+
T Consensus 490 --~~~VE~ydp~~~~W~~v~~m~~------------------~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 490 --LSSVERYDPETNQWTMVAPMTS------------------PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred --cceEEEEcCCCCceeEcccCcc------------------ccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 5679999999999999988855 99999999999999999999999999999888877666
Q ss_pred cCC
Q 002749 365 SDV 367 (885)
Q Consensus 365 ~~~ 367 (885)
|..
T Consensus 550 W~~ 552 (571)
T KOG4441|consen 550 WTE 552 (571)
T ss_pred eee
Confidence 643
No 26
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=4.2e-31 Score=296.32 Aligned_cols=280 Identities=21% Similarity=0.276 Sum_probs=211.6
Q ss_pred CCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEEC--CCCcEEEecCCCCCCcccC
Q 002749 24 EDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDV--LTRKWTRIRPAGEPPSPRA 101 (885)
Q Consensus 24 ~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~--~t~~W~~l~~~g~~P~~R~ 101 (885)
+++|.||..++++++ +++|||+||.. .+++++||+ .+++|++++++.. .+|.
T Consensus 2 ~~lp~~~~~~~~~~~------~~~vyv~GG~~------------------~~~~~~~d~~~~~~~W~~l~~~p~--~~R~ 55 (346)
T TIGR03547 2 PDLPVGFKNGTGAII------GDKVYVGLGSA------------------GTSWYKLDLKKPSKGWQKIADFPG--GPRN 55 (346)
T ss_pred CCCCccccCceEEEE------CCEEEEEcccc------------------CCeeEEEECCCCCCCceECCCCCC--CCcc
Confidence 578999999998899 89999999962 256899996 5789999885421 4799
Q ss_pred ccEEEEECCEEEEEcCcCCCC-----CccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCc
Q 002749 102 AHAAAAVGTMVVFQGGIGPAG-----HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKR 176 (885)
Q Consensus 102 ~hsa~~~~~~lyv~GG~~~~~-----~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~ 176 (885)
.|++++++++|||+||..... ..++++|+||+.+++ |+++. ..+|.+|.+|+++...+++||++||.++..
T Consensus 56 ~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~--W~~~~--~~~p~~~~~~~~~~~~~g~IYviGG~~~~~ 131 (346)
T TIGR03547 56 QAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS--WQKLD--TRSPVGLLGASGFSLHNGQAYFTGGVNKNI 131 (346)
T ss_pred cceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE--EecCC--CCCCCcccceeEEEEeCCEEEEEcCcChHH
Confidence 999999999999999985322 246899999999954 99984 245777888887744445999999986421
Q ss_pred ----------------------------------ccCcEEEEecCCCCeeEEEcCCCCCCCC-CcccceEEEecCCEEEE
Q 002749 177 ----------------------------------VLSDAWALDTAQKPYVWQRLNPEGDRPS-ARMYATASARSDGMFLL 221 (885)
Q Consensus 177 ----------------------------------~~ndv~~~d~~t~~~~W~~i~~~g~~P~-~r~~hsa~~~~~g~l~i 221 (885)
.++++++||+.++ +|+.+.++ |. +|..|+++ ..+++||+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--~W~~~~~~---p~~~r~~~~~~-~~~~~iyv 205 (346)
T TIGR03547 132 FDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--QWRNLGEN---PFLGTAGSAIV-HKGNKLLL 205 (346)
T ss_pred HHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--ceeECccC---CCCcCCCceEE-EECCEEEE
Confidence 2478999999999 99999766 54 45555444 56789999
Q ss_pred EccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCcc-------ceeEEEEECCEEEEEcccCCCCCC-----------
Q 002749 222 CGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPR-------YQHAAVFVGARLHVTGGALRGGRA----------- 283 (885)
Q Consensus 222 ~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R-------~~hs~~~~~~~l~V~GG~~~~~~~----------- 283 (885)
+||....+....+++.|+...+ ..+|...+.+ |.+| .+|+++.++++|||+||.......
T Consensus 206 ~GG~~~~~~~~~~~~~y~~~~~-~~~W~~~~~m-~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~ 283 (346)
T TIGR03547 206 INGEIKPGLRTAEVKQYLFTGG-KLEWNKLPPL-PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAH 283 (346)
T ss_pred EeeeeCCCccchheEEEEecCC-CceeeecCCC-CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCcccc
Confidence 9998655444556776665211 2367777766 4443 466678899999999997532110
Q ss_pred --ccCCCcEEEEECCCCcEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEeCCEEEEEcCCCC-CCCCCceEEee
Q 002749 284 --IEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-DILLDDFLVAE 359 (885)
Q Consensus 284 --~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~~-~~~~~D~~~ld 359 (885)
......+++||+++++|+.+..+|. +|..+++++++++|||+||.+. ...++|++.+-
T Consensus 284 ~~~~~~~~~e~yd~~~~~W~~~~~lp~------------------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 284 EGLIKAWSSEVYALDNGKWSKVGKLPQ------------------GLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred CCCCceeEeeEEEecCCcccccCCCCC------------------CceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 0012468999999999999998855 8888999899999999999875 47788887653
No 27
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=8.6e-32 Score=316.44 Aligned_cols=255 Identities=23% Similarity=0.406 Sum_probs=228.0
Q ss_pred CCCCCCcccccceEecCCCCCCCccccEEEEeccccCCCCEEEEEcCCCC-CCCCCCCCCCCcccccccCcEEEEECCCC
Q 002749 7 LHPAPSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATA-IEGGATSSAPGIRLAGVTNSVHLYDVLTR 85 (885)
Q Consensus 7 ~~~~~~y~~~~~~w~~~~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~-~~~~~~~~~~~~~~~~~~~dv~~yd~~t~ 85 (885)
......||+.++.|....++|.+|..|+++++ +++||++||... .. ..+++++||+.++
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~------~~~lYv~GG~~~~~~--------------~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL------NGKLYVVGGYDSGSD--------------RLSSVERYDPRTN 359 (571)
T ss_pred cceeEEecCCcCcEeecCCCCcccccccEEEE------CCEEEEEccccCCCc--------------ccceEEEecCCCC
Confidence 34577899999999999999999999999999 899999999985 32 5899999999999
Q ss_pred cEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcE
Q 002749 86 KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRY 165 (885)
Q Consensus 86 ~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~ 165 (885)
+|+.++++. .+|..|++++++++||++||.+ +....+++++||+.+++ |..+ ++++.+|++|+++++++ +
T Consensus 360 ~W~~~a~M~---~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~YDp~~~~--W~~v---a~m~~~r~~~gv~~~~g-~ 429 (571)
T KOG4441|consen 360 QWTPVAPMN---TKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECYDPVTNK--WTPV---APMLTRRSGHGVAVLGG-K 429 (571)
T ss_pred ceeccCCcc---CccccceeEEECCEEEEEeccc-cccccccEEEecCCCCc--cccc---CCCCcceeeeEEEEECC-E
Confidence 999988765 8999999999999999999986 55678899999999955 9999 88999999999999986 9
Q ss_pred EEEEecCCCCc-ccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCC
Q 002749 166 LVSVSGNDGKR-VLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNG 244 (885)
Q Consensus 166 lyv~GG~~~~~-~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~ 244 (885)
+|++||.++.. +++++++||+.++ +|+.++++ +.+|.+|.+++ .++.||++||.++ ...+..+++||+.++
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M---~~~R~~~g~a~-~~~~iYvvGG~~~-~~~~~~VE~ydp~~~- 501 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPM---NTRRSGFGVAV-LNGKIYVVGGFDG-TSALSSVERYDPETN- 501 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCC--ceeecCCc---ccccccceEEE-ECCEEEEECCccC-CCccceEEEEcCCCC-
Confidence 99999999887 9999999999999 99999988 67787777555 5779999999988 455777999999999
Q ss_pred eeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCC
Q 002749 245 QWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 245 ~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
+|..+..+ +.+|..++++.+++++|++||.++... .+++.+||+++++|+....+
T Consensus 502 --~W~~v~~m-~~~rs~~g~~~~~~~ly~vGG~~~~~~----l~~ve~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 502 --QWTMVAPM-TSPRSAVGVVVLGGKLYAVGGFDGNNN----LNTVECYDPETDTWTEVTEP 556 (571)
T ss_pred --ceeEcccC-ccccccccEEEECCEEEEEecccCccc----cceeEEcCCCCCceeeCCCc
Confidence 88888666 699999999999999999999765443 78999999999999999983
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.5e-32 Score=272.62 Aligned_cols=227 Identities=24% Similarity=0.400 Sum_probs=205.7
Q ss_pred CCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEE
Q 002749 26 APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAA 105 (885)
Q Consensus 26 ~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa 105 (885)
.|..|.||+.+.+ .+++||+||...+.+ +-|.+|.||+++++|.+....|..|.+|-+|++
T Consensus 75 VPyqRYGHtvV~y------~d~~yvWGGRND~eg-------------aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsA 135 (392)
T KOG4693|consen 75 VPYQRYGHTVVEY------QDKAYVWGGRNDDEG-------------ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSA 135 (392)
T ss_pred cchhhcCceEEEE------cceEEEEcCccCccc-------------ccceeeeeccccccccccceeeecCCccCCcee
Confidence 6778999999999 999999999988775 689999999999999999999999999999999
Q ss_pred EEECCEEEEEcCcC-CCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCC---------
Q 002749 106 AAVGTMVVFQGGIG-PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGK--------- 175 (885)
Q Consensus 106 ~~~~~~lyv~GG~~-~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~--------- 175 (885)
+++++.+|||||.. ....+++|++++|+++ ++|..+.+.+.+|.-|..|++++++. .+|||||....
T Consensus 136 cV~gn~MyiFGGye~~a~~FS~d~h~ld~~T--mtWr~~~Tkg~PprwRDFH~a~~~~~-~MYiFGGR~D~~gpfHs~~e 212 (392)
T KOG4693|consen 136 CVWGNQMYIFGGYEEDAQRFSQDTHVLDFAT--MTWREMHTKGDPPRWRDFHTASVIDG-MMYIFGGRSDESGPFHSIHE 212 (392)
T ss_pred eEECcEEEEecChHHHHHhhhccceeEeccc--eeeeehhccCCCchhhhhhhhhhccc-eEEEeccccccCCCccchhh
Confidence 99999999999975 4557899999999999 77999999999999999999999995 99999998542
Q ss_pred cccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCC-CcccceEEEEcCCCCeeEEEeCCCC
Q 002749 176 RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG-APLADAYGLLMHRNGQWEWTLAPGV 254 (885)
Q Consensus 176 ~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~-~~l~dv~~~d~~~~~~W~w~~~~~~ 254 (885)
.+-+.+.++|+.|. .|......+..|..|+.|++.+ .|++||+|||..+.- .-.+|+|.||+.+. .|..+.+.+.
T Consensus 213 ~Yc~~i~~ld~~T~--aW~r~p~~~~~P~GRRSHS~fv-Yng~~Y~FGGYng~ln~HfndLy~FdP~t~-~W~~I~~~Gk 288 (392)
T KOG4693|consen 213 QYCDTIMALDLATG--AWTRTPENTMKPGGRRSHSTFV-YNGKMYMFGGYNGTLNVHFNDLYCFDPKTS-MWSVISVRGK 288 (392)
T ss_pred hhcceeEEEecccc--ccccCCCCCcCCCcccccceEE-EcceEEEecccchhhhhhhcceeecccccc-hheeeeccCC
Confidence 35677889999999 9999988888899999999986 588999999997754 45899999999876 8998999999
Q ss_pred CCCccceeEEEEECCEEEEEcccC
Q 002749 255 APSPRYQHAAVFVGARLHVTGGAL 278 (885)
Q Consensus 255 ~P~~R~~hs~~~~~~~l~V~GG~~ 278 (885)
.|.+|..+++++.++++|+|||..
T Consensus 289 ~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 289 YPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred CCCcccceeEEEECCEEEEecCCC
Confidence 999999999999999999999975
No 29
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=2e-30 Score=293.59 Aligned_cols=287 Identities=18% Similarity=0.218 Sum_probs=216.8
Q ss_pred ceEecCCCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECC--CCcEEEecCCCC
Q 002749 18 TYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVL--TRKWTRIRPAGE 95 (885)
Q Consensus 18 ~~w~~~~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~--t~~W~~l~~~g~ 95 (885)
..++.++++|.||..++.+.+ +++|||+||.. .+.+++||+. +++|.+++++.
T Consensus 17 ~~~~~l~~lP~~~~~~~~~~~------~~~iyv~gG~~------------------~~~~~~~d~~~~~~~W~~l~~~p- 71 (376)
T PRK14131 17 ANAEQLPDLPVPFKNGTGAID------NNTVYVGLGSA------------------GTSWYKLDLNAPSKGWTKIAAFP- 71 (376)
T ss_pred eecccCCCCCcCccCCeEEEE------CCEEEEEeCCC------------------CCeEEEEECCCCCCCeEECCcCC-
Confidence 356778899999999999988 89999999962 2347899986 47899987542
Q ss_pred CCcccCccEEEEECCEEEEEcCcCC-C----CCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEe
Q 002749 96 PPSPRAAHAAAAVGTMVVFQGGIGP-A----GHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVS 170 (885)
Q Consensus 96 ~P~~R~~hsa~~~~~~lyv~GG~~~-~----~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~G 170 (885)
..+|..|++++++++|||+||... . ...++++|+||+.++ +|.++.. ..|.+|.+|+++++.+++||++|
T Consensus 72 -~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n--~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~G 146 (376)
T PRK14131 72 -GGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN--SWQKLDT--RSPVGLAGHVAVSLHNGKAYITG 146 (376)
T ss_pred -CCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC--EEEeCCC--CCCCcccceEEEEeeCCEEEEEC
Confidence 147999999999999999999754 1 134689999999994 5999842 35777888988775556999999
Q ss_pred cCCCC----------------------------------cccCcEEEEecCCCCeeEEEcCCCCCCCC-CcccceEEEec
Q 002749 171 GNDGK----------------------------------RVLSDAWALDTAQKPYVWQRLNPEGDRPS-ARMYATASARS 215 (885)
Q Consensus 171 G~~~~----------------------------------~~~ndv~~~d~~t~~~~W~~i~~~g~~P~-~r~~hsa~~~~ 215 (885)
|.+.. ...+++++||+.++ +|+.+.++ |. +|..|+ ++..
T Consensus 147 G~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~--~W~~~~~~---p~~~~~~~a-~v~~ 220 (376)
T PRK14131 147 GVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN--QWKNAGES---PFLGTAGSA-VVIK 220 (376)
T ss_pred CCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC--eeeECCcC---CCCCCCcce-EEEE
Confidence 97542 12478999999999 99998755 54 454454 4556
Q ss_pred CCEEEEEccCCCCCCcccceEEEEc--CCCCeeEEEeCCCCCCCccc--------eeEEEEECCEEEEEcccCCCCCC--
Q 002749 216 DGMFLLCGGRDASGAPLADAYGLLM--HRNGQWEWTLAPGVAPSPRY--------QHAAVFVGARLHVTGGALRGGRA-- 283 (885)
Q Consensus 216 ~g~l~i~GG~~~~~~~l~dv~~~d~--~~~~~W~w~~~~~~~P~~R~--------~hs~~~~~~~l~V~GG~~~~~~~-- 283 (885)
+++||++||....+....++|.++. .++ +|..++.+ |.+|. ++.+++++++|||+||.......
T Consensus 221 ~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~---~W~~~~~~-p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~ 296 (376)
T PRK14131 221 GNKLWLINGEIKPGLRTDAVKQGKFTGNNL---KWQKLPDL-PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGAREN 296 (376)
T ss_pred CCEEEEEeeeECCCcCChhheEEEecCCCc---ceeecCCC-CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhh
Confidence 7899999998665555667776654 434 77787766 45543 33457789999999997642210
Q ss_pred -----------ccCCCcEEEEECCCCcEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEeCCEEEEEcCCCC-CCC
Q 002749 284 -----------IEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-DIL 351 (885)
Q Consensus 284 -----------~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~~-~~~ 351 (885)
......+++||+++++|+.+..+|. +|..++++.++++|||+||... ...
T Consensus 297 ~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~------------------~r~~~~av~~~~~iyv~GG~~~~~~~ 358 (376)
T PRK14131 297 YQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ------------------GLAYGVSVSWNNGVLLIGGETAGGKA 358 (376)
T ss_pred hhcCCcccccCCcceeehheEEecCCcccccCcCCC------------------CccceEEEEeCCEEEEEcCCCCCCcE
Confidence 0011357899999999999988855 8999999999999999999864 367
Q ss_pred CCceEEeeCCC
Q 002749 352 LDDFLVAENSP 362 (885)
Q Consensus 352 ~~D~~~ld~~~ 362 (885)
++|++.++...
T Consensus 359 ~~~v~~~~~~~ 369 (376)
T PRK14131 359 VSDVTLLSWDG 369 (376)
T ss_pred eeeEEEEEEcC
Confidence 88999887654
No 30
>PHA02713 hypothetical protein; Provisional
Probab=99.98 E-value=1.2e-30 Score=307.93 Aligned_cols=253 Identities=13% Similarity=0.125 Sum_probs=213.0
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCc
Q 002749 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 74 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R 153 (885)
...+++||+.+++|..++++ |.+|..|++++++++||++||........+++++||+.++ +|..+ +++|.+|
T Consensus 271 ~~~v~~yd~~~~~W~~l~~m---p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n--~W~~~---~~m~~~R 342 (557)
T PHA02713 271 NPCILVYNINTMEYSVISTI---PNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENK--IHVEL---PPMIKNR 342 (557)
T ss_pred CCCEEEEeCCCCeEEECCCC---CccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCC--eEeeC---CCCcchh
Confidence 35789999999999998854 5789999999999999999997544456789999999995 49988 7899999
Q ss_pred cccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCC----
Q 002749 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG---- 229 (885)
Q Consensus 154 ~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~---- 229 (885)
.+|+++++++ .+|++||.++...++++++||+.++ +|+.++++ |.+|..|++++. +++||++||.+...
T Consensus 343 ~~~~~~~~~g-~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~m---p~~r~~~~~~~~-~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 343 CRFSLAVIDD-TIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDM---PIALSSYGMCVL-DQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred hceeEEEECC-EEEEECCcCCCCCCceEEEEECCCC--eEEECCCC---CcccccccEEEE-CCEEEEEeCCCccccccc
Confidence 9999988886 9999999988777899999999999 99999876 788888887764 78999999986431
Q ss_pred -------------CcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECC
Q 002749 230 -------------APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTA 296 (885)
Q Consensus 230 -------------~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~ 296 (885)
..++.++.||+.++ +|..++.+ +.+|.++++++++++|||+||.++... ..+.+++||++
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td---~W~~v~~m-~~~r~~~~~~~~~~~IYv~GG~~~~~~---~~~~ve~Ydp~ 488 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNN---IWETLPNF-WTGTIRPGVVSHKDDIYVVCDIKDEKN---VKTCIFRYNTN 488 (557)
T ss_pred ccccccccccccccccceEEEECCCCC---eEeecCCC-CcccccCcEEEECCEEEEEeCCCCCCc---cceeEEEecCC
Confidence 12678999999999 88888776 689999999999999999999764321 13568999999
Q ss_pred C-CcEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEeCCEEEEEcCCCCCCCCCceEEeeCCCCCcCCCC
Q 002749 297 A-GVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNS 369 (885)
Q Consensus 297 t-~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~~~~~~~D~~~ld~~~~~~~~~~ 369 (885)
+ ++|+.+++++. +|..+++++++++||++||+++. .++..+|..+-+|....
T Consensus 489 ~~~~W~~~~~m~~------------------~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 489 TYNGWELITTTES------------------RLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHIC 541 (557)
T ss_pred CCCCeeEccccCc------------------ccccceeEEECCEEEEEeeecce---eehhhcCcccccccchh
Confidence 9 89999999865 99999999999999999999873 35667777777765433
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.98 E-value=1.3e-30 Score=302.00 Aligned_cols=296 Identities=29% Similarity=0.458 Sum_probs=246.2
Q ss_pred CCCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccC-cEEEEECCCCcEEEecCCCCCCcccC
Q 002749 23 DEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTN-SVHLYDVLTRKWTRIRPAGEPPSPRA 101 (885)
Q Consensus 23 ~~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~-dv~~yd~~t~~W~~l~~~g~~P~~R~ 101 (885)
.+..|.+|++|+++.+ ++++|||||....... .+ |+|++|..+..|......+..|.+|+
T Consensus 54 ~~~~p~~R~~hs~~~~------~~~~~vfGG~~~~~~~-------------~~~dl~~~d~~~~~w~~~~~~g~~p~~r~ 114 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLI------GNKLYVFGGYGSGDRL-------------TDLDLYVLDLESQLWTKPAATGDEPSPRY 114 (482)
T ss_pred CCCCcchhhccceeEE------CCEEEEECCCCCCCcc-------------ccceeEEeecCCcccccccccCCCCCccc
Confidence 4568899999999999 8999999999877642 22 69999999999999999999999999
Q ss_pred ccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCc-ccCc
Q 002749 102 AHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKR-VLSD 180 (885)
Q Consensus 102 ~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~-~~nd 180 (885)
+|++++++++||+|||........++++.||+.+.+ |..+...+.+|.+|.+|+++++++ ++|||||.+... .+||
T Consensus 115 g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~--W~~l~~~~~~P~~r~~Hs~~~~g~-~l~vfGG~~~~~~~~nd 191 (482)
T KOG0379|consen 115 GHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRT--WSLLSPTGDPPPPRAGHSATVVGT-KLVVFGGIGGTGDSLND 191 (482)
T ss_pred ceeEEEECCeEEEEccccCCCCChhheEeccCCCCc--EEEecCcCCCCCCcccceEEEECC-EEEEECCccCcccceee
Confidence 999999999999999997666778999999999955 999999999999999999999995 999999998776 8999
Q ss_pred EEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCC--CCCCCc
Q 002749 181 AWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP--GVAPSP 258 (885)
Q Consensus 181 v~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~--~~~P~~ 258 (885)
+|+||+++. +|.++...+..|.||.+|+++++.+..++ +||.+.....++|+|.||..+ |+|.... +..|.+
T Consensus 192 l~i~d~~~~--~W~~~~~~g~~P~pR~gH~~~~~~~~~~v-~gG~~~~~~~l~D~~~ldl~~---~~W~~~~~~g~~p~~ 265 (482)
T KOG0379|consen 192 LHIYDLETS--TWSELDTQGEAPSPRYGHAMVVVGNKLLV-FGGGDDGDVYLNDVHILDLST---WEWKLLPTGGDLPSP 265 (482)
T ss_pred eeeeccccc--cceecccCCCCCCCCCCceEEEECCeEEE-EeccccCCceecceEeeeccc---ceeeeccccCCCCCC
Confidence 999999999 89999999999999999999988775554 555444556799999999996 6777554 778999
Q ss_pred cceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEeCC
Q 002749 259 RYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGV 338 (885)
Q Consensus 259 R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~ 338 (885)
|++|+.+..+.+++++||..... .....++|.||+++..|..+..... ..+.+|..|+.+....
T Consensus 266 R~~h~~~~~~~~~~l~gG~~~~~--~~~l~~~~~l~~~~~~w~~~~~~~~--------------~~~~~~~~~~~~~~~~ 329 (482)
T KOG0379|consen 266 RSGHSLTVSGDHLLLFGGGTDPK--QEPLGDLYGLDLETLVWSKVESVGV--------------VRPSPRLGHAAELIDE 329 (482)
T ss_pred cceeeeEEECCEEEEEcCCcccc--cccccccccccccccceeeeecccc--------------ccccccccccceeecc
Confidence 99999999999999999975541 1237889999999999999988751 1255888888888754
Q ss_pred ----EEEEEcCCC-CCCCCCceEEeeCCC
Q 002749 339 ----RIYIYGGLK-GDILLDDFLVAENSP 362 (885)
Q Consensus 339 ----~IyV~GG~~-~~~~~~D~~~ld~~~ 362 (885)
.+.++||.. .....++++.+....
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (482)
T KOG0379|consen 330 LGKDGLGILGGNQILGERLADVFSLQIKL 358 (482)
T ss_pred CCccceeeecCccccccchhhcccccccc
Confidence 355555532 234455666554433
No 32
>PLN02153 epithiospecifier protein
Probab=99.98 E-value=5.9e-30 Score=286.26 Aligned_cols=262 Identities=24% Similarity=0.379 Sum_probs=205.9
Q ss_pred CCCcEEEecCCC-CCCcccCccEEEEECCEEEEEcCcCCC-CCccCcEEEEEecCCcceEEEEeecCCCCC-CccccEEE
Q 002749 83 LTRKWTRIRPAG-EPPSPRAAHAAAAVGTMVVFQGGIGPA-GHSTDDLYVLDLTNDKFKWHRVVVQGQGPG-PRYGHVMD 159 (885)
Q Consensus 83 ~t~~W~~l~~~g-~~P~~R~~hsa~~~~~~lyv~GG~~~~-~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~-~R~~ht~~ 159 (885)
....|.++.+.+ ..|.||..|++++++++|||+||.... ....+++|+||+.++ +|.++...+..|. .+.+|+++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTH--TWSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCC--EEEEcCccCCCCCCccCceEEE
Confidence 467799998753 578999999999999999999998532 334689999999994 5998865444443 35588888
Q ss_pred EECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCC--CCCCCcccceEEEecCCEEEEEccCCCCC-----Ccc
Q 002749 160 LVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEG--DRPSARMYATASARSDGMFLLCGGRDASG-----APL 232 (885)
Q Consensus 160 ~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g--~~P~~r~~hsa~~~~~g~l~i~GG~~~~~-----~~l 232 (885)
++++ .||||||.+....++++++||+.++ +|+.+..+. ..|.+|..|+++. .+++||++||.+..+ ..+
T Consensus 83 ~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 83 AVGT-KLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EECC-EEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCccc
Confidence 8886 8999999988778899999999999 999987652 2378899888876 467899999986432 236
Q ss_pred cceEEEEcCCCCeeEEEeCCCC--CCCccceeEEEEECCEEEEEcccCCC----CCCccCCCcEEEEECCCCcEEEccCC
Q 002749 233 ADAYGLLMHRNGQWEWTLAPGV--APSPRYQHAAVFVGARLHVTGGALRG----GRAIEGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 233 ~dv~~~d~~~~~~W~w~~~~~~--~P~~R~~hs~~~~~~~l~V~GG~~~~----~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
++++.||..++ +|..++.+ +|.+|.+|+++.++++|||+||.... +......+++++||+++++|+++...
T Consensus 159 ~~v~~yd~~~~---~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 159 RTIEAYNIADG---KWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ceEEEEECCCC---eEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 78999999988 66666543 46899999999999999999997421 11111257899999999999999754
Q ss_pred cccCCCCCCCCCCCCCcCcccccceEEEEeCCEEEEEcCCC---------CCCCCCceEEeeCCCCCcCCC
Q 002749 307 VTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK---------GDILLDDFLVAENSPFQSDVN 368 (885)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~---------~~~~~~D~~~ld~~~~~~~~~ 368 (885)
.. .|.+|..|++++++++||||||.. ....++|+|.+|..+..+...
T Consensus 236 g~---------------~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~ 291 (341)
T PLN02153 236 GA---------------KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL 291 (341)
T ss_pred CC---------------CCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence 22 145899999999999999999973 234578999999988887643
No 33
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=8.3e-31 Score=309.35 Aligned_cols=251 Identities=12% Similarity=0.126 Sum_probs=212.3
Q ss_pred CCCcccccceEecCCCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEE
Q 002749 10 APSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTR 89 (885)
Q Consensus 10 ~~~y~~~~~~w~~~~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 89 (885)
...||+.++.|...+++|.+|.+|+++++ +++||++||...... ..+++++||+.+++|..
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~l------~~~IYviGG~~~~~~-------------~~~~v~~Yd~~~n~W~~ 334 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHIINYASAIV------DNEIIIAGGYNFNNP-------------SLNKVYKINIENKIHVE 334 (557)
T ss_pred EEEEeCCCCeEEECCCCCccccceEEEEE------CCEEEEEcCCCCCCC-------------ccceEEEEECCCCeEee
Confidence 35699999999999999999999999999 899999999753221 47899999999999998
Q ss_pred ecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEE
Q 002749 90 IRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSV 169 (885)
Q Consensus 90 l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~ 169 (885)
++++ |.+|..|++++++++||++||... ....+++++||+.+++ |..+ +++|.+|.+|+++++++ .||++
T Consensus 335 ~~~m---~~~R~~~~~~~~~g~IYviGG~~~-~~~~~sve~Ydp~~~~--W~~~---~~mp~~r~~~~~~~~~g-~IYvi 404 (557)
T PHA02713 335 LPPM---IKNRCRFSLAVIDDTIYAIGGQNG-TNVERTIECYTMGDDK--WKML---PDMPIALSSYGMCVLDQ-YIYII 404 (557)
T ss_pred CCCC---cchhhceeEEEECCEEEEECCcCC-CCCCceEEEEECCCCe--EEEC---CCCCcccccccEEEECC-EEEEE
Confidence 8754 589999999999999999999753 3457889999999954 9998 78999999999988875 99999
Q ss_pred ecCCCC------------------cccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCc
Q 002749 170 SGNDGK------------------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 231 (885)
Q Consensus 170 GG~~~~------------------~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~ 231 (885)
||.++. ..++.+++||++++ +|+.++++ +.+|..|++++ .+++||++||.+.....
T Consensus 405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m---~~~r~~~~~~~-~~~~IYv~GG~~~~~~~ 478 (557)
T PHA02713 405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNF---WTGTIRPGVVS-HKDDIYVVCDIKDEKNV 478 (557)
T ss_pred eCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCC---CcccccCcEEE-ECCEEEEEeCCCCCCcc
Confidence 998642 13678999999999 99999876 67888777765 46789999998754333
Q ss_pred ccceEEEEcCC-CCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCC
Q 002749 232 LADAYGLLMHR-NGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 232 l~dv~~~d~~~-~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
.+.++.||+.+ + +|..++.+ |.+|..+++++++++|||+||.++ ..++++||+.+++|+.+.+.
T Consensus 479 ~~~ve~Ydp~~~~---~W~~~~~m-~~~r~~~~~~~~~~~iyv~Gg~~~-------~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 479 KTCIFRYNTNTYN---GWELITTT-ESRLSALHTILHDNTIMMLHCYES-------YMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred ceeEEEecCCCCC---CeeEcccc-CcccccceeEEECCEEEEEeeecc-------eeehhhcCcccccccchhhh
Confidence 45679999998 7 67788766 799999999999999999999765 23689999999999999876
No 34
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=6.4e-30 Score=283.87 Aligned_cols=274 Identities=16% Similarity=0.200 Sum_probs=206.5
Q ss_pred CCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCC--CcEEEecCCCCCCcccCccEE
Q 002749 28 GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLT--RKWTRIRPAGEPPSPRAAHAA 105 (885)
Q Consensus 28 ~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~~hsa 105 (885)
..+.+|.+.++ ++.|||+||.......- ....-+..++++|+|+... .+|..+. ++|.+|..|++
T Consensus 2 ~~~~g~~~~~~------~~~l~v~GG~~~~~~~~----~~~g~~~~~~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~ 68 (323)
T TIGR03548 2 LGVAGCYAGII------GDYILVAGGCNFPEDPL----AEGGKKKNYKGIYIAKDENSNLKWVKDG---QLPYEAAYGAS 68 (323)
T ss_pred CceeeEeeeEE------CCEEEEeeccCCCCCch----hhCCcEEeeeeeEEEecCCCceeEEEcc---cCCccccceEE
Confidence 45778999999 89999999997653110 0001123678999996332 3698876 45688998999
Q ss_pred EEECCEEEEEcCcCCCCCccCcEEEEEecCCcc--eEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEE
Q 002749 106 AAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKF--KWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWA 183 (885)
Q Consensus 106 ~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~--~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~ 183 (885)
+++++.||++||... ...++++|+||+.+++| .|..+ +++|.+|..|+++++++ .|||+||......++++++
T Consensus 69 ~~~~~~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~---~~lp~~~~~~~~~~~~~-~iYv~GG~~~~~~~~~v~~ 143 (323)
T TIGR03548 69 VSVENGIYYIGGSNS-SERFSSVYRITLDESKEELICETI---GNLPFTFENGSACYKDG-TLYVGGGNRNGKPSNKSYL 143 (323)
T ss_pred EEECCEEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEc---CCCCcCccCceEEEECC-EEEEEeCcCCCccCceEEE
Confidence 999999999999854 34578999999998663 23555 78999999999988876 8999999866667899999
Q ss_pred EecCCCCeeEEEcCCCCCCC-CCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCC----CCCc
Q 002749 184 LDTAQKPYVWQRLNPEGDRP-SARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGV----APSP 258 (885)
Q Consensus 184 ~d~~t~~~~W~~i~~~g~~P-~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~----~P~~ 258 (885)
||+.++ +|++++++ | .+|..|++++ .+++||++||.+.. ...|++.||+.++ +|..++.+ .|.+
T Consensus 144 yd~~~~--~W~~~~~~---p~~~r~~~~~~~-~~~~iYv~GG~~~~--~~~~~~~yd~~~~---~W~~~~~~~~~~~p~~ 212 (323)
T TIGR03548 144 FNLETQ--EWFELPDF---PGEPRVQPVCVK-LQNELYVFGGGSNI--AYTDGYKYSPKKN---QWQKVADPTTDSEPIS 212 (323)
T ss_pred EcCCCC--CeeECCCC---CCCCCCcceEEE-ECCEEEEEcCCCCc--cccceEEEecCCC---eeEECCCCCCCCCcee
Confidence 999999 99999765 3 3566666554 56789999998643 3568899999988 66676643 2333
Q ss_pred cceeEEEE-ECCEEEEEcccCCCC----------------------------CCccCCCcEEEEECCCCcEEEccCCccc
Q 002749 259 RYQHAAVF-VGARLHVTGGALRGG----------------------------RAIEGEAAVAVLDTAAGVWLDRNGLVTS 309 (885)
Q Consensus 259 R~~hs~~~-~~~~l~V~GG~~~~~----------------------------~~~~~~~~v~~yD~~t~~W~~v~~~~~~ 309 (885)
+..++++. .+++|||+||.+... ......+++++||+.+++|+.++.++.
T Consensus 213 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~- 291 (323)
T TIGR03548 213 LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF- 291 (323)
T ss_pred ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc-
Confidence 44555444 479999999986321 001123679999999999999987642
Q ss_pred CCCCCCCCCCCCCcCcccccceEEEEeCCEEEEEcCCC
Q 002749 310 SRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK 347 (885)
Q Consensus 310 ~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~ 347 (885)
.+|..++++.++++||++||..
T Consensus 292 ----------------~~r~~~~~~~~~~~iyv~GG~~ 313 (323)
T TIGR03548 292 ----------------FARCGAALLLTGNNIFSINGEL 313 (323)
T ss_pred ----------------cccCchheEEECCEEEEEeccc
Confidence 2899999999999999999964
No 35
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.97 E-value=1.2e-30 Score=274.46 Aligned_cols=218 Identities=49% Similarity=0.779 Sum_probs=175.8
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhh
Q 002749 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINAL 663 (885)
Q Consensus 584 ~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ 663 (885)
+|||||||++.+|.++|+.++..+.+ .+||||||||||+.+.||+.++++++.. |.++++|+||||.+.++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d------~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~ 73 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPND------KLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFL 73 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCC------EEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhh
Confidence 58999999999999999999986655 8999999999999999999999999887 8899999999999998877
Q ss_pred cCChHHHH-----HHhCCCCchhhhhhhhhhccCCceEEEEcC-eEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchh
Q 002749 664 FGFRLECI-----ERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILM 737 (885)
Q Consensus 664 ~gf~~e~~-----~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~-~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~ 737 (885)
.++..+.. ..........++..+.++|..||+++.++. +++|||||+.|.....+++. ..+ ..+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~------~~~-~~~~~~ 146 (225)
T cd00144 74 YGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK------EEP-EDQLPE 146 (225)
T ss_pred cCCcchhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh------cCc-ccccce
Confidence 77654421 011111234577888899999999999986 89999999999976655544 111 123678
Q ss_pred ccccCCCCCCCCCCCcccCCCCCceeEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCe
Q 002749 738 DLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNA 817 (885)
Q Consensus 738 dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ 817 (885)
+++|++|.... .....+.|+. |+++.+.|++.++.++|||||+++..|+.....++++||+|++.|++..+|.
T Consensus 147 ~~lw~r~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~ 219 (225)
T cd00144 147 DLLWSDPLELP--GGFGSSRRGG-----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNK 219 (225)
T ss_pred eeeecCCCCCC--CCCcCCCCCC-----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCcc
Confidence 99999997532 2223334433 8999999999999999999999999998777889999999999999877777
Q ss_pred EEEEE
Q 002749 818 GAILV 822 (885)
Q Consensus 818 ga~l~ 822 (885)
.+++.
T Consensus 220 l~~~~ 224 (225)
T cd00144 220 LAALV 224 (225)
T ss_pred EEEEe
Confidence 77654
No 36
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=7.2e-28 Score=285.74 Aligned_cols=253 Identities=15% Similarity=0.222 Sum_probs=212.5
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCcc
Q 002749 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (885)
Q Consensus 75 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~ 154 (885)
..+..|+..+++|..+... | .+..|+++++++.||++||........+++++||+.+ .+|..+ +.+|.+|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~---~~~~~~R~ 334 (534)
T PHA03098 264 YNYITNYSPLSEINTIIDI---H-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKT--KSWNKV---PELIYPRK 334 (534)
T ss_pred ceeeecchhhhhcccccCc---c-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCC--CeeeEC---CCCCcccc
Confidence 4456788888899887532 2 2556799999999999999876666778999999999 459888 77889999
Q ss_pred ccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccc
Q 002749 155 GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLAD 234 (885)
Q Consensus 155 ~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~d 234 (885)
+|+++++++ .+|++||.++...++++++||+.++ +|+.+.++ |.+|..|+++. .++++|++||....+..+++
T Consensus 335 ~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l---p~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~ 407 (534)
T PHA03098 335 NPGVTVFNN-RIYVIGGIYNSISLNTVESWKPGES--KWREEPPL---IFPRYNPCVVN-VNNLIYVIGGISKNDELLKT 407 (534)
T ss_pred cceEEEECC-EEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCc---CcCCccceEEE-ECCEEEEECCcCCCCcccce
Confidence 999988875 8999999987778899999999999 99998766 78898888865 46799999998666666899
Q ss_pred eEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCCcccCCCCC
Q 002749 235 AYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSK 314 (885)
Q Consensus 235 v~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~ 314 (885)
++.|++.++ +|...+.+ |.+|.+|+++.++++|||+||...... ....+.+++||+++++|+.++.++.
T Consensus 408 v~~yd~~t~---~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~~~~W~~~~~~~~------ 476 (534)
T PHA03098 408 VECFSLNTN---KWSKGSPL-PISHYGGCAIYHDGKIYVIGGISYIDN-IKVYNIVESYNPVTNKWTELSSLNF------ 476 (534)
T ss_pred EEEEeCCCC---eeeecCCC-CccccCceEEEECCEEEEECCccCCCC-CcccceEEEecCCCCceeeCCCCCc------
Confidence 999999987 77787665 789999999999999999999764332 1124569999999999999987744
Q ss_pred CCCCCCCCcCcccccceEEEEeCCEEEEEcCCCCCCCCCceEEeeCCCCCcC
Q 002749 315 GHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSD 366 (885)
Q Consensus 315 ~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~~~~~~~D~~~ld~~~~~~~ 366 (885)
+|..++++.++++|||+||.++....++++.+|..+.+|.
T Consensus 477 ------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 477 ------------PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred ------------ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 8999999999999999999988777899999998887775
No 37
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=4.1e-28 Score=281.14 Aligned_cols=253 Identities=31% Similarity=0.468 Sum_probs=221.3
Q ss_pred cCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccC-cEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEE
Q 002749 91 RPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTD-DLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSV 169 (885)
Q Consensus 91 ~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~-dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~ 169 (885)
...+..|.+|+.|+++.+++++|||||........+ |+|+||..+ ..|.....++..|.+|++|+++++++ .+|+|
T Consensus 52 ~~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~--~~w~~~~~~g~~p~~r~g~~~~~~~~-~l~lf 128 (482)
T KOG0379|consen 52 DVLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLES--QLWTKPAATGDEPSPRYGHSLSAVGD-KLYLF 128 (482)
T ss_pred ccCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCC--cccccccccCCCCCcccceeEEEECC-eEEEE
Confidence 356678899999999999999999999865554444 699999999 55999999999999999999999996 99999
Q ss_pred ecCCC-CcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEE
Q 002749 170 SGNDG-KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEW 248 (885)
Q Consensus 170 GG~~~-~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w 248 (885)
||.+. ...++++++||+.++ +|..+.+.+.+|++|.+|++++.+ .++|||||.+..+..++|+|.||..+. +|..
T Consensus 129 GG~~~~~~~~~~l~~~d~~t~--~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~-~W~~ 204 (482)
T KOG0379|consen 129 GGTDKKYRNLNELHSLDLSTR--TWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETS-TWSE 204 (482)
T ss_pred ccccCCCCChhheEeccCCCC--cEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeeccccc-ccee
Confidence 99984 667899999999999 999999999999999999999887 799999999888878999999999977 5777
Q ss_pred EeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCCcccCCCCCCCCCCCCCcCcccc
Q 002749 249 TLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRR 328 (885)
Q Consensus 249 ~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R 328 (885)
....+..|.||++|+++.++++++||||...+.. .++++|+||+.+.+|..+..... .|.+|
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~---~l~D~~~ldl~~~~W~~~~~~g~---------------~p~~R 266 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDV---YLNDVHILDLSTWEWKLLPTGGD---------------LPSPR 266 (482)
T ss_pred cccCCCCCCCCCCceEEEECCeEEEEeccccCCc---eecceEeeecccceeeeccccCC---------------CCCCc
Confidence 7778999999999999999999999999773222 37999999999999997776544 36699
Q ss_pred cceEEEEeCCEEEEEcCCCCC-C-CCCceEEeeCCCCCcCCC
Q 002749 329 CRHASASIGVRIYIYGGLKGD-I-LLDDFLVAENSPFQSDVN 368 (885)
Q Consensus 329 ~~hs~~~~~~~IyV~GG~~~~-~-~~~D~~~ld~~~~~~~~~ 368 (885)
.+|+.+..+.+++++||.... . .+.|+|.|+..+..+...
T Consensus 267 ~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~ 308 (482)
T KOG0379|consen 267 SGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKV 308 (482)
T ss_pred ceeeeEEECCEEEEEcCCcccccccccccccccccccceeee
Confidence 999999999999999998764 4 799999999887666543
No 38
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=8.7e-28 Score=285.04 Aligned_cols=253 Identities=17% Similarity=0.203 Sum_probs=208.2
Q ss_pred CcccccceEecCCCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEec
Q 002749 12 SYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIR 91 (885)
Q Consensus 12 ~y~~~~~~w~~~~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 91 (885)
.|+..++.|....+.|. +..|+++++ +++||++||...... ..+++++||+.+++|..++
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~lyv~GG~~~~~~-------------~~~~v~~yd~~~~~W~~~~ 327 (534)
T PHA03098 268 TNYSPLSEINTIIDIHY-VYCFGSVVL------NNVIYFIGGMNKNNL-------------SVNSVVSYDTKTKSWNKVP 327 (534)
T ss_pred ecchhhhhcccccCccc-cccceEEEE------CCEEEEECCCcCCCC-------------eeccEEEEeCCCCeeeECC
Confidence 46677788888776654 445788888 899999999865432 4689999999999999887
Q ss_pred CCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEec
Q 002749 92 PAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSG 171 (885)
Q Consensus 92 ~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG 171 (885)
. +|.+|..|++++++++||++||.. .....+++++||+.+++ |..+ .++|.+|++|+++++++ .+||+||
T Consensus 328 ~---~~~~R~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~--W~~~---~~lp~~r~~~~~~~~~~-~iYv~GG 397 (534)
T PHA03098 328 E---LIYPRKNPGVTVFNNRIYVIGGIY-NSISLNTVESWKPGESK--WREE---PPLIFPRYNPCVVNVNN-LIYVIGG 397 (534)
T ss_pred C---CCcccccceEEEECCEEEEEeCCC-CCEecceEEEEcCCCCc--eeeC---CCcCcCCccceEEEECC-EEEEECC
Confidence 4 457899999999999999999986 44567899999999954 9988 78899999999988876 9999999
Q ss_pred CCC-CcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCC--cccceEEEEcCCCCeeEE
Q 002749 172 NDG-KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGA--PLADAYGLLMHRNGQWEW 248 (885)
Q Consensus 172 ~~~-~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~--~l~dv~~~d~~~~~~W~w 248 (885)
... ...++++++||+.++ +|+.+.++ |.+|..|+++.. ++++|++||...... .+++++.||+.++ +|
T Consensus 398 ~~~~~~~~~~v~~yd~~t~--~W~~~~~~---p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~---~W 468 (534)
T PHA03098 398 ISKNDELLKTVECFSLNTN--KWSKGSPL---PISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTN---KW 468 (534)
T ss_pred cCCCCcccceEEEEeCCCC--eeeecCCC---CccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCC---ce
Confidence 643 345789999999999 99998765 788888887664 678999999865432 3677999999988 78
Q ss_pred EeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCCcc
Q 002749 249 TLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVT 308 (885)
Q Consensus 249 ~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~ 308 (885)
..++.+ |.+|..++++.++++|||+||...... .+++++||+++++|..+...|.
T Consensus 469 ~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 469 TELSSL-NFPRINASLCIFNNKIYVVGGDKYEYY----INEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred eeCCCC-CcccccceEEEECCEEEEEcCCcCCcc----cceeEEEeCCCCEEEecCCCcc
Confidence 888755 688999999999999999999865432 5689999999999999987654
No 39
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=2e-26 Score=255.96 Aligned_cols=231 Identities=17% Similarity=0.248 Sum_probs=185.7
Q ss_pred ceEecCCCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEE-EecCCCCC
Q 002749 18 TYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT-RIRPAGEP 96 (885)
Q Consensus 18 ~~w~~~~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~-~l~~~g~~ 96 (885)
..|...+++|.||..|+++++ +++||++||..... ..+++++||+.+++|+ ......++
T Consensus 51 ~~W~~~~~lp~~r~~~~~~~~------~~~lyviGG~~~~~--------------~~~~v~~~d~~~~~w~~~~~~~~~l 110 (323)
T TIGR03548 51 LKWVKDGQLPYEAAYGASVSV------ENGIYYIGGSNSSE--------------RFSSVYRITLDESKEELICETIGNL 110 (323)
T ss_pred eeEEEcccCCccccceEEEEE------CCEEEEEcCCCCCC--------------CceeEEEEEEcCCceeeeeeEcCCC
Confidence 379999999999999999988 89999999986432 4789999999999983 22334467
Q ss_pred CcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCC-CCccccEEEEECCcEEEEEecCCCC
Q 002749 97 PSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP-GPRYGHVMDLVSQRYLVSVSGNDGK 175 (885)
Q Consensus 97 P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p-~~R~~ht~~~~~~~~lyv~GG~~~~ 175 (885)
|.+|..|++++++++|||+||.. .+...+++++||+.+++ |..+ .++| .+|..|+++++++ .|||+||.++.
T Consensus 111 p~~~~~~~~~~~~~~iYv~GG~~-~~~~~~~v~~yd~~~~~--W~~~---~~~p~~~r~~~~~~~~~~-~iYv~GG~~~~ 183 (323)
T TIGR03548 111 PFTFENGSACYKDGTLYVGGGNR-NGKPSNKSYLFNLETQE--WFEL---PDFPGEPRVQPVCVKLQN-ELYVFGGGSNI 183 (323)
T ss_pred CcCccCceEEEECCEEEEEeCcC-CCccCceEEEEcCCCCC--eeEC---CCCCCCCCCcceEEEECC-EEEEEcCCCCc
Confidence 78999999999999999999974 33457899999999955 9998 4555 4788888877775 89999998754
Q ss_pred cccCcEEEEecCCCCeeEEEcCCCCC--CCCCcccceEEEecCCEEEEEccCCCCC------------------------
Q 002749 176 RVLSDAWALDTAQKPYVWQRLNPEGD--RPSARMYATASARSDGMFLLCGGRDASG------------------------ 229 (885)
Q Consensus 176 ~~~ndv~~~d~~t~~~~W~~i~~~g~--~P~~r~~hsa~~~~~g~l~i~GG~~~~~------------------------ 229 (885)
. ..++++||++++ +|+++.++.. .|..+..++++++.+++||++||.+...
T Consensus 184 ~-~~~~~~yd~~~~--~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (323)
T TIGR03548 184 A-YTDGYKYSPKKN--QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYF 260 (323)
T ss_pred c-ccceEEEecCCC--eeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHh
Confidence 3 467999999999 9999987642 3445556666777888999999986421
Q ss_pred -------CcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCC
Q 002749 230 -------APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGG 281 (885)
Q Consensus 230 -------~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~ 281 (885)
...++++.||+.++ +|..++.++..+|.+++++.++++|||+||....+
T Consensus 261 ~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 261 LKPPEWYNWNRKILIYNVRTG---KWKSIGNSPFFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred CCCccccCcCceEEEEECCCC---eeeEcccccccccCchheEEECCEEEEEeccccCC
Confidence 01367999999988 78888766447899999999999999999976544
No 40
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=245.53 Aligned_cols=219 Identities=31% Similarity=0.531 Sum_probs=185.2
Q ss_pred CCcccccceEecC--CCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEE
Q 002749 11 PSYRTLETYWDTD--EDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT 88 (885)
Q Consensus 11 ~~y~~~~~~w~~~--~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 88 (885)
++|+...+.|+.. +..|+||++|++++++ .+.|+||||....-.. +++ --..|+|.||+.+++|+
T Consensus 101 y~Yn~k~~eWkk~~spn~P~pRsshq~va~~-----s~~l~~fGGEfaSPnq-------~qF-~HYkD~W~fd~~trkwe 167 (521)
T KOG1230|consen 101 YSYNTKKNEWKKVVSPNAPPPRSSHQAVAVP-----SNILWLFGGEFASPNQ-------EQF-HHYKDLWLFDLKTRKWE 167 (521)
T ss_pred eEEeccccceeEeccCCCcCCCccceeEEec-----cCeEEEeccccCCcch-------hhh-hhhhheeeeeeccchhe
Confidence 6789999999965 6688999999999995 3599999997654321 111 13679999999999999
Q ss_pred EecCCCCCCcccCccEEEEECCEEEEEcCcC---CCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcE
Q 002749 89 RIRPAGEPPSPRAAHAAAAVGTMVVFQGGIG---PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRY 165 (885)
Q Consensus 89 ~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~---~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~ 165 (885)
+|...| -|+||++|-++++.+++++|||.. ....+++|||+||+++ ++|.++.+.|..|.+|+||.+.+.-++.
T Consensus 168 ql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdt--ykW~Klepsga~PtpRSGcq~~vtpqg~ 244 (521)
T KOG1230|consen 168 QLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDT--YKWSKLEPSGAGPTPRSGCQFSVTPQGG 244 (521)
T ss_pred eeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccc--eeeeeccCCCCCCCCCCcceEEecCCCc
Confidence 998776 679999999999999999999974 3346789999999999 8899999988899999999999996678
Q ss_pred EEEEecCCC---------CcccCcEEEEecCCC---CeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCC------
Q 002749 166 LVSVSGNDG---------KRVLSDAWALDTAQK---PYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA------ 227 (885)
Q Consensus 166 lyv~GG~~~---------~~~~ndv~~~d~~t~---~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~------ 227 (885)
+||+||+.. ....+|+|.++++++ .|.|.++.+.|-.|.||.+.++++..+++-+.|||...
T Consensus 245 i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeE 324 (521)
T KOG1230|consen 245 IVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEE 324 (521)
T ss_pred EEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccch
Confidence 999999853 236799999999883 38999999999999999999999999999999999743
Q ss_pred --CCCcccceEEEEcCCCCee
Q 002749 228 --SGAPLADAYGLLMHRNGQW 246 (885)
Q Consensus 228 --~~~~l~dv~~~d~~~~~~W 246 (885)
.+..+||+|.|+...+ +|
T Consensus 325 sl~g~F~NDLy~fdlt~n-rW 344 (521)
T KOG1230|consen 325 SLSGEFFNDLYFFDLTRN-RW 344 (521)
T ss_pred hhhhhhhhhhhheecccc-hh
Confidence 2356889999988766 44
No 41
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.94 E-value=3.5e-25 Score=250.82 Aligned_cols=252 Identities=19% Similarity=0.299 Sum_probs=187.2
Q ss_pred cceEecCCCCC-CCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCC
Q 002749 17 ETYWDTDEDAP-GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGE 95 (885)
Q Consensus 17 ~~~w~~~~~~P-~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 95 (885)
++.|.+.+++| .+|.+|+++.+ +++|||+||........ ....++++|+||+.+++|++++..
T Consensus 61 ~~~W~~l~~~p~~~r~~~~~v~~------~~~IYV~GG~~~~~~~~--------~~~~~~~v~~YD~~~n~W~~~~~~-- 124 (376)
T PRK14131 61 SKGWTKIAAFPGGPREQAVAAFI------DGKLYVFGGIGKTNSEG--------SPQVFDDVYKYDPKTNSWQKLDTR-- 124 (376)
T ss_pred CCCeEECCcCCCCCcccceEEEE------CCEEEEEcCCCCCCCCC--------ceeEcccEEEEeCCCCEEEeCCCC--
Confidence 57899999988 59999999999 89999999986411100 012578999999999999999742
Q ss_pred CCcccCccEEEE-ECCEEEEEcCcCCCC---------------------------------CccCcEEEEEecCCcceEE
Q 002749 96 PPSPRAAHAAAA-VGTMVVFQGGIGPAG---------------------------------HSTDDLYVLDLTNDKFKWH 141 (885)
Q Consensus 96 ~P~~R~~hsa~~-~~~~lyv~GG~~~~~---------------------------------~~~~dl~~~D~~~~~~~W~ 141 (885)
.|.+|.+|++++ .+++||++||..... ...+++++||+.+++ |.
T Consensus 125 ~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~--W~ 202 (376)
T PRK14131 125 SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQ--WK 202 (376)
T ss_pred CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCe--ee
Confidence 467788888887 799999999974210 124789999999955 99
Q ss_pred EEeecCCCCC-CccccEEEEECCcEEEEEecCCCCc-ccCcEEE--EecCCCCeeEEEcCCCCCCCCCcc-------cce
Q 002749 142 RVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWA--LDTAQKPYVWQRLNPEGDRPSARM-------YAT 210 (885)
Q Consensus 142 ~v~~~~~~p~-~R~~ht~~~~~~~~lyv~GG~~~~~-~~ndv~~--~d~~t~~~~W~~i~~~g~~P~~r~-------~hs 210 (885)
.+ +++|. +|.+|+++.+++ .|||+||..... ...++|. ||++++ +|+++.++ |.+|. .+.
T Consensus 203 ~~---~~~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~--~W~~~~~~---p~~~~~~~~~~~~~~ 273 (376)
T PRK14131 203 NA---GESPFLGTAGSAVVIKGN-KLWLINGEIKPGLRTDAVKQGKFTGNNL--KWQKLPDL---PPAPGGSSQEGVAGA 273 (376)
T ss_pred EC---CcCCCCCCCcceEEEECC-EEEEEeeeECCCcCChhheEEEecCCCc--ceeecCCC---CCCCcCCcCCccceE
Confidence 88 66775 788888877775 899999975332 3455554 566777 99999876 34432 223
Q ss_pred EEEecCCEEEEEccCCCCCC----------------cccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEE
Q 002749 211 ASARSDGMFLLCGGRDASGA----------------PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVT 274 (885)
Q Consensus 211 a~~~~~g~l~i~GG~~~~~~----------------~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~ 274 (885)
.+++.+++||++||.+.... ....+..|+..++ +|..+..+ |.+|..++++.++++|||+
T Consensus 274 ~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~l-p~~r~~~~av~~~~~iyv~ 349 (376)
T PRK14131 274 FAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG---KWQKVGEL-PQGLAYGVSVSWNNGVLLI 349 (376)
T ss_pred eceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC---cccccCcC-CCCccceEEEEeCCEEEEE
Confidence 24456788999999853211 1123567888877 67777655 7999999999999999999
Q ss_pred cccCCCCCCccCCCcEEEEECCCCcEEE
Q 002749 275 GGALRGGRAIEGEAAVAVLDTAAGVWLD 302 (885)
Q Consensus 275 GG~~~~~~~~~~~~~v~~yD~~t~~W~~ 302 (885)
||....+. ..+++++|+++.+.|+.
T Consensus 350 GG~~~~~~---~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 350 GGETAGGK---AVSDVTLLSWDGKKLTV 374 (376)
T ss_pred cCCCCCCc---EeeeEEEEEEcCCEEEE
Confidence 99754432 26789999999888865
No 42
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=6.7e-25 Score=255.62 Aligned_cols=208 Identities=19% Similarity=0.255 Sum_probs=175.2
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCc
Q 002749 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~ 124 (885)
++.||++||..... ..+++++||+.+++|..++++ |.+|..+++++++++||++||...
T Consensus 271 ~~~lyviGG~~~~~--------------~~~~v~~Ydp~~~~W~~~~~m---~~~r~~~~~v~~~~~iYviGG~~~---- 329 (480)
T PHA02790 271 GEVVYLIGGWMNNE--------------IHNNAIAVNYISNNWIPIPPM---NSPRLYASGVPANNKLYVVGGLPN---- 329 (480)
T ss_pred CCEEEEEcCCCCCC--------------cCCeEEEEECCCCEEEECCCC---CchhhcceEEEECCEEEEECCcCC----
Confidence 88999999985432 468899999999999999865 489999999999999999999742
Q ss_pred cCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCC
Q 002749 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~ 204 (885)
.+++++||+.++ +|..+ +++|.+|.+|+++++++ .||++||.++. .+.+++||+.++ +|+.++++ |.
T Consensus 330 ~~sve~ydp~~n--~W~~~---~~l~~~r~~~~~~~~~g-~IYviGG~~~~--~~~ve~ydp~~~--~W~~~~~m---~~ 396 (480)
T PHA02790 330 PTSVERWFHGDA--AWVNM---PSLLKPRCNPAVASINN-VIYVIGGHSET--DTTTEYLLPNHD--QWQFGPST---YY 396 (480)
T ss_pred CCceEEEECCCC--eEEEC---CCCCCCCcccEEEEECC-EEEEecCcCCC--CccEEEEeCCCC--EEEeCCCC---CC
Confidence 256899999884 59988 78999999999988876 99999998654 467999999999 99998776 78
Q ss_pred CcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCc
Q 002749 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (885)
Q Consensus 205 ~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~ 284 (885)
+|..|++++ .+++||++||. +..|++.++ +|..++.+ |.+|.++++++++++|||+||+++..
T Consensus 397 ~r~~~~~~~-~~~~IYv~GG~---------~e~ydp~~~---~W~~~~~m-~~~r~~~~~~v~~~~IYviGG~~~~~--- 459 (480)
T PHA02790 397 PHYKSCALV-FGRRLFLVGRN---------AEFYCESSN---TWTLIDDP-IYPRDNPELIIVDNKLLLIGGFYRGS--- 459 (480)
T ss_pred ccccceEEE-ECCEEEEECCc---------eEEecCCCC---cEeEcCCC-CCCccccEEEEECCEEEEECCcCCCc---
Confidence 888887765 57799999983 467888877 77788766 78999999999999999999986432
Q ss_pred cCCCcEEEEECCCCcEEEcc
Q 002749 285 EGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 285 ~~~~~v~~yD~~t~~W~~v~ 304 (885)
..+++++||+++++|+...
T Consensus 460 -~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 460 -YIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred -ccceEEEEECCCCeEEecC
Confidence 1468999999999998764
No 43
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=4.2e-25 Score=238.01 Aligned_cols=259 Identities=25% Similarity=0.418 Sum_probs=209.6
Q ss_pred CcccccceEec---CCCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEE
Q 002749 12 SYRTLETYWDT---DEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT 88 (885)
Q Consensus 12 ~y~~~~~~w~~---~~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~ 88 (885)
.|+..+++|-. .++.|.+-..|..++. +.+||+|||+...+. ++||+|-+......|+
T Consensus 61 vYNTatnqWf~PavrGDiPpgcAA~Gfvcd------GtrilvFGGMvEYGk-------------YsNdLYELQasRWeWk 121 (830)
T KOG4152|consen 61 VYNTATNQWFAPAVRGDIPPGCAAFGFVCD------GTRILVFGGMVEYGK-------------YSNDLYELQASRWEWK 121 (830)
T ss_pred hhccccceeecchhcCCCCCchhhcceEec------CceEEEEccEeeecc-------------ccchHHHhhhhhhhHh
Confidence 58899999984 5899999999999999 899999999998875 7899998888888899
Q ss_pred EecC----CCCCCcccCccEEEEECCEEEEEcCcCCCC--------CccCcEEEEEecC--CcceEEEEeecCCCCCCcc
Q 002749 89 RIRP----AGEPPSPRAAHAAAAVGTMVVFQGGIGPAG--------HSTDDLYVLDLTN--DKFKWHRVVVQGQGPGPRY 154 (885)
Q Consensus 89 ~l~~----~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~--------~~~~dl~~~D~~~--~~~~W~~v~~~~~~p~~R~ 154 (885)
++.+ .|.+|-||-+|+...++++.|+|||...+. ++++|+|.+++.- ....|....+.|..|.+|.
T Consensus 122 rlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRE 201 (830)
T KOG4152|consen 122 RLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRE 201 (830)
T ss_pred hcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcc
Confidence 9865 466889999999999999999999974222 6789999999973 4467999999999999999
Q ss_pred ccEEEEE-----CCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCC--
Q 002749 155 GHVMDLV-----SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA-- 227 (885)
Q Consensus 155 ~ht~~~~-----~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~-- 227 (885)
.|+++++ +..++|||||.++. ++.|+|.+|+++- .|.+....|..|.||..|++..++| +||+|||+-.
T Consensus 202 SHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl--~W~kp~~~G~~PlPRSLHsa~~IGn-KMyvfGGWVPl~ 277 (830)
T KOG4152|consen 202 SHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTL--TWNKPSLSGVAPLPRSLHSATTIGN-KMYVFGGWVPLV 277 (830)
T ss_pred cceeEEEEeccCCcceEEEEcccccc-cccceeEEeccee--ecccccccCCCCCCcccccceeecc-eeEEecceeeee
Confidence 9999998 13389999999764 6899999999998 9999999999999999999998866 6999999832
Q ss_pred -----------CCCcccceEEEEcCCCCeeEEEeCC------CCCCCccceeEEEEECCEEEEEcccCCCCCCc---cCC
Q 002749 228 -----------SGAPLADAYGLLMHRNGQWEWTLAP------GVAPSPRYQHAAVFVGARLHVTGGALRGGRAI---EGE 287 (885)
Q Consensus 228 -----------~~~~l~dv~~~d~~~~~~W~w~~~~------~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~---~~~ 287 (885)
..+..+.+-.++..++ .|..+. ...|.+|.+|+++.++.+||+-.|+++--... -..
T Consensus 278 ~~~~~~~~hekEWkCTssl~clNldt~---~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCC 354 (830)
T KOG4152|consen 278 MDDVKVATHEKEWKCTSSLACLNLDTM---AWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCC 354 (830)
T ss_pred ccccccccccceeeeccceeeeeecch---heeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccch
Confidence 1233444556667766 555543 33688999999999999999999987533211 013
Q ss_pred CcEEEEECC
Q 002749 288 AAVAVLDTA 296 (885)
Q Consensus 288 ~~v~~yD~~ 296 (885)
.++|.+|++
T Consensus 355 kDlWyLdTe 363 (830)
T KOG4152|consen 355 KDLWYLDTE 363 (830)
T ss_pred hhhhhhccc
Confidence 455555553
No 44
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.93 E-value=1.3e-24 Score=243.78 Aligned_cols=247 Identities=20% Similarity=0.314 Sum_probs=180.7
Q ss_pred cccceEecCCCCC-CCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCC
Q 002749 15 TLETYWDTDEDAP-GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA 93 (885)
Q Consensus 15 ~~~~~w~~~~~~P-~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 93 (885)
..++.|...+++| .+|.+|+++++ +++||++||........ .....+++++||+.+++|++++.
T Consensus 38 ~~~~~W~~l~~~p~~~R~~~~~~~~------~~~iYv~GG~~~~~~~~--------~~~~~~~v~~Yd~~~~~W~~~~~- 102 (346)
T TIGR03547 38 KPSKGWQKIADFPGGPRNQAVAAAI------DGKLYVFGGIGKANSEG--------SPQVFDDVYRYDPKKNSWQKLDT- 102 (346)
T ss_pred CCCCCceECCCCCCCCcccceEEEE------CCEEEEEeCCCCCCCCC--------cceecccEEEEECCCCEEecCCC-
Confidence 3567899999999 59999999999 89999999986432100 01146899999999999999873
Q ss_pred CCCCcccCccEEE-EECCEEEEEcCcCCCC---------------------------------CccCcEEEEEecCCcce
Q 002749 94 GEPPSPRAAHAAA-AVGTMVVFQGGIGPAG---------------------------------HSTDDLYVLDLTNDKFK 139 (885)
Q Consensus 94 g~~P~~R~~hsa~-~~~~~lyv~GG~~~~~---------------------------------~~~~dl~~~D~~~~~~~ 139 (885)
..|.+|.+|+++ +++++||++||..... ...+++++||+.+++
T Consensus 103 -~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~-- 179 (346)
T TIGR03547 103 -RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQ-- 179 (346)
T ss_pred -CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCc--
Confidence 346778888877 7899999999975210 124789999999955
Q ss_pred EEEEeecCCCCC-CccccEEEEECCcEEEEEecCCCCc-ccCcEEEEec--CCCCeeEEEcCCCCCCC----CCcccceE
Q 002749 140 WHRVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWALDT--AQKPYVWQRLNPEGDRP----SARMYATA 211 (885)
Q Consensus 140 W~~v~~~~~~p~-~R~~ht~~~~~~~~lyv~GG~~~~~-~~ndv~~~d~--~t~~~~W~~i~~~g~~P----~~r~~hsa 211 (885)
|..+ +++|. +|.+|+++++++ +|||+||..... ...+++.||+ +++ +|+.+.++..+. ..+..|++
T Consensus 180 W~~~---~~~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~y~~~~~~~--~W~~~~~m~~~r~~~~~~~~~~~a 253 (346)
T TIGR03547 180 WRNL---GENPFLGTAGSAIVHKGN-KLLLINGEIKPGLRTAEVKQYLFTGGKL--EWNKLPPLPPPKSSSQEGLAGAFA 253 (346)
T ss_pred eeEC---ccCCCCcCCCceEEEECC-EEEEEeeeeCCCccchheEEEEecCCCc--eeeecCCCCCCCCCccccccEEee
Confidence 9998 67775 688888888775 899999986433 2345776665 555 999998773211 11234444
Q ss_pred EEecCCEEEEEccCCCCCC----------------cccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEc
Q 002749 212 SARSDGMFLLCGGRDASGA----------------PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTG 275 (885)
Q Consensus 212 ~~~~~g~l~i~GG~~~~~~----------------~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~G 275 (885)
+ ..+++||++||.+..+. .+..+..|+..++ +|..+..+ |.+|..++++.++++|||+|
T Consensus 254 ~-~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~l-p~~~~~~~~~~~~~~iyv~G 328 (346)
T TIGR03547 254 G-ISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG---KWSKVGKL-PQGLAYGVSVSWNNGVLLIG 328 (346)
T ss_pred e-EECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC---cccccCCC-CCCceeeEEEEcCCEEEEEe
Confidence 4 45789999999853211 1235678888877 77788766 78899999889999999999
Q ss_pred ccCCCCCCccCCCcEEEE
Q 002749 276 GALRGGRAIEGEAAVAVL 293 (885)
Q Consensus 276 G~~~~~~~~~~~~~v~~y 293 (885)
|....+.. .++++.|
T Consensus 329 G~~~~~~~---~~~v~~~ 343 (346)
T TIGR03547 329 GENSGGKA---VTDVYLL 343 (346)
T ss_pred ccCCCCCE---eeeEEEE
Confidence 98654432 4566655
No 45
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=1.1e-23 Score=245.48 Aligned_cols=209 Identities=16% Similarity=0.282 Sum_probs=176.5
Q ss_pred EEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEE
Q 002749 105 AAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWAL 184 (885)
Q Consensus 105 a~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~ 184 (885)
+++.++.||++||... ....+++++||+.++ +|..+ ++++.+|..++++++++ .+|++||.++. +++++|
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~--~W~~~---~~m~~~r~~~~~v~~~~-~iYviGG~~~~---~sve~y 336 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISN--NWIPI---PPMNSPRLYASGVPANN-KLYVVGGLPNP---TSVERW 336 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCC--EEEEC---CCCCchhhcceEEEECC-EEEEECCcCCC---CceEEE
Confidence 4458999999999753 346788999999994 59999 78899999999988875 99999998642 679999
Q ss_pred ecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEE
Q 002749 185 DTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAA 264 (885)
Q Consensus 185 d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~ 264 (885)
|+.++ +|..++++ |.+|..|++++ .+++||++||.+.. .+.+..|++.++ +|...+.+ |.+|.+|++
T Consensus 337 dp~~n--~W~~~~~l---~~~r~~~~~~~-~~g~IYviGG~~~~---~~~ve~ydp~~~---~W~~~~~m-~~~r~~~~~ 403 (480)
T PHA02790 337 FHGDA--AWVNMPSL---LKPRCNPAVAS-INNVIYVIGGHSET---DTTTEYLLPNHD---QWQFGPST-YYPHYKSCA 403 (480)
T ss_pred ECCCC--eEEECCCC---CCCCcccEEEE-ECCEEEEecCcCCC---CccEEEEeCCCC---EEEeCCCC-CCccccceE
Confidence 99999 99999876 77888777765 57899999997543 356889999888 78888766 699999999
Q ss_pred EEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEeCCEEEEEc
Q 002749 265 VFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYG 344 (885)
Q Consensus 265 ~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~G 344 (885)
+.++++|||+||. +++||+++++|+.+++++. +|..+++++++++|||+|
T Consensus 404 ~~~~~~IYv~GG~------------~e~ydp~~~~W~~~~~m~~------------------~r~~~~~~v~~~~IYviG 453 (480)
T PHA02790 404 LVFGRRLFLVGRN------------AEFYCESSNTWTLIDDPIY------------------PRDNPELIIVDNKLLLIG 453 (480)
T ss_pred EEECCEEEEECCc------------eEEecCCCCcEeEcCCCCC------------------CccccEEEEECCEEEEEC
Confidence 9999999999982 5789999999999998855 899999999999999999
Q ss_pred CCCCCCCCCceEEeeCCCCCcC
Q 002749 345 GLKGDILLDDFLVAENSPFQSD 366 (885)
Q Consensus 345 G~~~~~~~~D~~~ld~~~~~~~ 366 (885)
|+++...++.+..+|..+-+|.
T Consensus 454 G~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 454 GFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred CcCCCcccceEEEEECCCCeEE
Confidence 9986666778888887776664
No 46
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.88 E-value=2.1e-22 Score=208.21 Aligned_cols=185 Identities=21% Similarity=0.372 Sum_probs=131.2
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCc--ceeeEEEeccccCCCCChHHHHHHHHHHHhc---CCCCEEEeccCCccc
Q 002749 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGDI--TYIDYLFLGDYVDRGQHSLETITLLLALKIE---YPENVHLIRGNHEAA 658 (885)
Q Consensus 584 ~vvGDiHG~~~~L~~il~~~g~~~~~~~~--~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~---~p~~v~llrGNHE~~ 658 (885)
+||||||||+++|.++|+.+++.+....| ....+||+|||||||+++.||+.+|++|+.+ .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 58999999999999999998864321111 1128999999999999999999999999754 457899999999999
Q ss_pred chhhhcCChH-HHHHHhCCC--Cchhhh---hhhhhhccCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCC
Q 002749 659 DINALFGFRL-ECIERMGEN--DGIWAW---TRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAG 732 (885)
Q Consensus 659 ~~~~~~gf~~-e~~~~~~~~--~~~~~~---~~~~~~f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~ 732 (885)
.++..+.+.. +....+... .....+ ..+.++++.||+...+++ ++|||||++|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~~-~~fvHag~~~-------------------- 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVND-TLFVHGGLGP-------------------- 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEECC-EEEEeCCcHH--------------------
Confidence 8875443321 111111100 001122 244788999999988874 8899999922
Q ss_pred CcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEecc
Q 002749 733 SIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSA 807 (885)
Q Consensus 733 ~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa 807 (885)
+|+..-. .+... ..-+.+.++++|+.++.++||+||+.++.|....++|++|+|.+.
T Consensus 140 -------~w~r~y~-------~~~~~----~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 140 -------LWYRGYS-------KETSD----KECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred -------HHhhHhh-------hhhhh----ccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 3322110 00000 011336788999999999999999999988877899999999874
No 47
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.87 E-value=3.2e-22 Score=212.44 Aligned_cols=131 Identities=22% Similarity=0.393 Sum_probs=99.2
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCC---cceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCccc
Q 002749 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGD---ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~---~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
+++||||||||++.|.++|+.+++...++. ....++||||||||||++|+|||.+|+++. .+.++++||||||.+
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence 589999999999999999999887411100 001279999999999999999999999885 446899999999998
Q ss_pred chhhhcCC-------hHHHHHHhCCC---CchhhhhhhhhhccCCceEEEEc-CeEEEecCCCCCCC
Q 002749 659 DINALFGF-------RLECIERMGEN---DGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSI 714 (885)
Q Consensus 659 ~~~~~~gf-------~~e~~~~~~~~---~~~~~~~~~~~~f~~LP~~~~i~-~~il~vHgGi~~~~ 714 (885)
.++...+- ..+....|... ....+++.+.++|+.||++..++ ++++|||||+.|..
T Consensus 80 ~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~ 146 (245)
T PRK13625 80 LYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDY 146 (245)
T ss_pred HHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHh
Confidence 87654331 13334444321 11246678899999999998774 57999999998863
No 48
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.83 E-value=6.9e-21 Score=201.58 Aligned_cols=160 Identities=23% Similarity=0.377 Sum_probs=113.9
Q ss_pred eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhh
Q 002749 583 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINA 662 (885)
Q Consensus 583 i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~ 662 (885)
++||||||||++.|+++|+.+++.+..+ .++|||||||||++|+|||.+|++++ .++++|+||||.+.++.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D-----~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~ 71 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKD-----RLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAV 71 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCC-----EEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHH
Confidence 5899999999999999999998764332 89999999999999999999999986 58999999999998877
Q ss_pred hcCChH----HHHHHhCCCCchhhhhhhhhhccCCceEEEEcC-eEEEecCCCCCCCcCHHHhhcccCCccc----CCCC
Q 002749 663 LFGFRL----ECIERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLERPITM----DAGS 733 (885)
Q Consensus 663 ~~gf~~----e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~-~il~vHgGi~~~~~~~~~i~~~~rp~~~----~~~~ 733 (885)
.+|+.. +....+-. ....+.+.++++.+|+...+++ ++++|||||+|.. ++++...+.+.++. +...
T Consensus 72 ~~g~~~~~~~~t~~~~l~---~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w-~~~~~~~~a~eve~~l~~~~~~ 147 (257)
T cd07422 72 AAGIKKPKKKDTLDDILN---APDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQW-SIEQALKLAREVEAALRGPNYR 147 (257)
T ss_pred hcCccccccHhHHHHHHh---ccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCC-CHHHHHHHHHHHHHHhcCCcHH
Confidence 666431 11111111 1233567899999999988875 7999999999985 55554443333221 1112
Q ss_pred cchhccccCCCCCCCCCCCcccCCCCCc
Q 002749 734 IILMDLLWSDPTENDSIEGLRPNARGPG 761 (885)
Q Consensus 734 ~~~~dllWsdP~~~~~~~~~~~n~rg~~ 761 (885)
.++..+.|..|. .|.++..|..
T Consensus 148 ~~~~~my~~~p~------~W~~~l~g~~ 169 (257)
T cd07422 148 EFLKNMYGNEPD------RWSDDLTGID 169 (257)
T ss_pred HHHHHhhCCCCc------ccCcccCccH
Confidence 244555555554 2555555443
No 49
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.83 E-value=1.3e-20 Score=199.27 Aligned_cols=130 Identities=23% Similarity=0.427 Sum_probs=99.0
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCC----CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCc
Q 002749 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAG----DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 656 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~----~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 656 (885)
.||.||||||||+.+|+++|+.+++.+.+. .....++||||||||||++|.|||.+|++++.. .++++||||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcH
Confidence 379999999999999999999998764320 000127999999999999999999999998754 57999999999
Q ss_pred ccchhhhcCCh-------HHHHHHhCCCCchhhhhhhhhhccCCceEEEEc-CeEEEecCCCCCC
Q 002749 657 AADINALFGFR-------LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRS 713 (885)
Q Consensus 657 ~~~~~~~~gf~-------~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~-~~il~vHgGi~~~ 713 (885)
.+.++...+.. .++...+... ...+.+.+.++|+.||+...++ ++++|||||+++.
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~ 142 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLEETVAQLEAE-SEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEE 142 (234)
T ss_pred HHHHHHhcCCCccccCcccchHHHHhhc-cHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChH
Confidence 98876543311 2223333211 2346678889999999998775 4799999998875
No 50
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.83 E-value=7e-20 Score=191.56 Aligned_cols=123 Identities=23% Similarity=0.329 Sum_probs=92.4
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCC--cceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchh
Q 002749 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGD--ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 661 (885)
Q Consensus 584 ~vvGDiHG~~~~L~~il~~~g~~~~~~~--~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 661 (885)
+||||||||++.|.++|+.+++....+. .....+|||||||||||+|.|||.+|++++.. .++++|+||||.+.+.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~--~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDA--GHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcC--CCEEEEEccCcHHHHH
Confidence 6999999999999999999987532100 00118999999999999999999999998643 5899999999998875
Q ss_pred hhcCCh-----------------HHHHHHhCCCCchhhhhhhhhhccCCceEEEEcCeEEEecCCCC
Q 002749 662 ALFGFR-----------------LECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIG 711 (885)
Q Consensus 662 ~~~gf~-----------------~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~ 711 (885)
...+.. .+..+.+.. ....++.+.++|+.||+....+ +++|||||+.
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~lP~~~~~~-~~~~VHAg~~ 143 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFRE--HSEEHKDWLEWFKTLPLFLDLG-GVRVVHACWD 143 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhc--cchhHHHHHHHHhcCCcEEEEC-CEEEEECCcC
Confidence 432210 122233321 1245677889999999998775 6999999986
No 51
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.82 E-value=1.1e-19 Score=194.50 Aligned_cols=125 Identities=22% Similarity=0.404 Sum_probs=98.2
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchh
Q 002749 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 661 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 661 (885)
.++||||||||++.|.++|+.+++.+..+ .++|||||||||++|+||+.+|+++ +.++++|+||||.+.+.
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D-----~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~ 72 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKD-----TLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLA 72 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCC-----EEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHH
Confidence 48999999999999999999998754322 7999999999999999999999987 35799999999999887
Q ss_pred hhcCChH----HHHHHhCCCCchhhhhhhhhhccCCceEEEE-cCeEEEecCCCCCCCcCHHH
Q 002749 662 ALFGFRL----ECIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRSIHSVEQ 719 (885)
Q Consensus 662 ~~~gf~~----e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i-~~~il~vHgGi~~~~~~~~~ 719 (885)
..+|+.. +....+-. ....+.+.++++.||+...+ ++++++||||++|.. ++++
T Consensus 73 ~~~g~~~~~~~~~l~~~l~---~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~-~~~~ 131 (275)
T PRK00166 73 VAAGIKRNKKKDTLDPILE---APDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQW-DLAT 131 (275)
T ss_pred hhcCCccccchhHHHHHHc---cccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCC-CHHH
Confidence 7776431 11222211 12345678899999998876 568999999999985 4433
No 52
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.82 E-value=3.8e-20 Score=195.62 Aligned_cols=127 Identities=24% Similarity=0.370 Sum_probs=101.3
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchh
Q 002749 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 661 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 661 (885)
.++||||||||+++|.++|+++++.+..+ .++||||||||||+|+|||.++.+++ .++++|+||||.+.+.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D-----~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~ 72 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQD-----TLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLA 72 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCC-----EEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHH
Confidence 48999999999999999999999765432 79999999999999999999999874 5688999999999998
Q ss_pred hhcCCh-----HHHHHHhCCCCchhhhhhhhhhccCCceEEEEc-CeEEEecCCCCCCCcCHHHhhc
Q 002749 662 ALFGFR-----LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSIHSVEQIEK 722 (885)
Q Consensus 662 ~~~gf~-----~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~-~~il~vHgGi~~~~~~~~~i~~ 722 (885)
..+|+. +.....+. ....+.+.++++.+|+....+ .++++|||||+|.. ++++...
T Consensus 73 ~~~g~~~~~~~d~l~~~l~----a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w-~l~~a~~ 134 (279)
T TIGR00668 73 VFAGISRNKPKDRLDPLLE----APDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQW-DLQTAKE 134 (279)
T ss_pred HhcCCCccCchHHHHHHHH----ccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCC-cHHHHHH
Confidence 887752 22211121 134567889999999997664 46999999999985 4555443
No 53
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.79 E-value=5.6e-19 Score=186.31 Aligned_cols=158 Identities=24% Similarity=0.329 Sum_probs=108.1
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCC-CEEEeccCCcccch
Q 002749 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPE-NVHLIRGNHEAADI 660 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~-~v~llrGNHE~~~~ 660 (885)
++++||||||+++.|.++|+.+.............+||||||||||++|.||+.+|++++..+|. ++++|+||||.+.+
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 69999999999999999998765321100001126999999999999999999999999999876 68999999998765
Q ss_pred hhhcC---------Ch------------------------------------------------------HHHHHHhCCC
Q 002749 661 NALFG---------FR------------------------------------------------------LECIERMGEN 677 (885)
Q Consensus 661 ~~~~g---------f~------------------------------------------------------~e~~~~~~~~ 677 (885)
..... |. .+....|+-.
T Consensus 83 ~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~ 162 (304)
T cd07421 83 AFLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVP 162 (304)
T ss_pred hHhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCC
Confidence 43321 00 1222333322
Q ss_pred Cch-----hhhhhhhhhccCCceEEEEcCeE-------------EEecCCCCCCCcCHHHhhccc-CCcccCCCCcchhc
Q 002749 678 DGI-----WAWTRFNQLFNCLPLAALIEKKI-------------ICMHGGIGRSIHSVEQIEKLE-RPITMDAGSIILMD 738 (885)
Q Consensus 678 ~~~-----~~~~~~~~~f~~LP~~~~i~~~i-------------l~vHgGi~~~~~~~~~i~~~~-rp~~~~~~~~~~~d 738 (885)
.+. .+-....+|++.||.....++ + +|||||+-|.+.--+|.+.+. +-... .-.|
T Consensus 163 ~~~~~l~~avP~~H~~fl~~l~~~~~~~~-~~~~~~~g~~~~~lifVHAGlrPg~pLe~Q~~~L~~~d~~~-----p~~~ 236 (304)
T cd07421 163 HGSSDLIKAVPEEHKKFLRNLVWVHEEDD-VCIETEEGLKHCKLIAVHAGLEKSNSVEEQLKLLRTKDTSI-----PKIA 236 (304)
T ss_pred cchHHHHHhCCHHHHHHHHhCCceEEeCc-ccccccccccccceEEEEcccCCCCChHHhhhhhhcccccc-----cccc
Confidence 111 112356788999999877653 5 999999999977556665543 11111 2237
Q ss_pred cccCCCC
Q 002749 739 LLWSDPT 745 (885)
Q Consensus 739 llWsdP~ 745 (885)
+||....
T Consensus 237 ~l~~R~~ 243 (304)
T cd07421 237 PLSGRKN 243 (304)
T ss_pred ccccchh
Confidence 7887754
No 54
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.77 E-value=7.7e-19 Score=183.50 Aligned_cols=120 Identities=26% Similarity=0.366 Sum_probs=89.4
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccch
Q 002749 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
++++||||||||++.|+++|+.+++.+..+ +++||||||||||+|.|||.+|.+ ..++.|+||||.+.+
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D-----~li~lGDlvDrGp~s~~vl~~l~~------~~~~~v~GNHE~~~l 85 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRD-----LLISVGDLIDRGPQSLRCLQLLEE------HWVRAVRGNHEQMAL 85 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccC-----EEEEcCcccCCCcCHHHHHHHHHc------CCceEeeCchHHHHH
Confidence 489999999999999999999998763321 799999999999999999999865 268899999999988
Q ss_pred hhhcCChHHHHHHhC-----C--CCchhhhhhhhhhccCCceEEEEc---CeEEEecCCCC
Q 002749 661 NALFGFRLECIERMG-----E--NDGIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 711 (885)
Q Consensus 661 ~~~~gf~~e~~~~~~-----~--~~~~~~~~~~~~~f~~LP~~~~i~---~~il~vHgGi~ 711 (885)
+...+-........+ . ......+..+.++++.||+...++ +++++||||++
T Consensus 86 ~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 86 DALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 754332111111111 0 011223456668999999997653 57999999984
No 55
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.77 E-value=2e-18 Score=179.19 Aligned_cols=121 Identities=30% Similarity=0.396 Sum_probs=93.8
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCC-CCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccc
Q 002749 581 APVKVFGDLHGQFGDLMRLFDEYGFPS-TAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~-~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
++++|||||||++.+|.++++.++..+ .+ .++|+|||||||+++.|++.+|.. ..+++|+||||.+.
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d------~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~ 68 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARD------RLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMA 68 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCC------EEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHH
Confidence 478999999999999999999987643 33 799999999999999999998865 36899999999998
Q ss_pred hhhhcC--ChHHHHHHhCCCC-----chhhhhhhhhhccCCceEEEEc---CeEEEecCCCCCC
Q 002749 660 INALFG--FRLECIERMGEND-----GIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIGRS 713 (885)
Q Consensus 660 ~~~~~g--f~~e~~~~~~~~~-----~~~~~~~~~~~f~~LP~~~~i~---~~il~vHgGi~~~ 713 (885)
+....+ ...+...+.+... ...+++.+.++|+.||+...++ .+++|||||+.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~ 132 (207)
T cd07424 69 IDALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSD 132 (207)
T ss_pred HhHhhCCCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcc
Confidence 877654 2233333332211 1114556788999999998875 4799999999655
No 56
>PHA02239 putative protein phosphatase
Probab=99.76 E-value=5.4e-18 Score=177.92 Aligned_cols=140 Identities=26% Similarity=0.407 Sum_probs=101.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCC--CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccc
Q 002749 582 PVKVFGDLHGQFGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~--~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
++++||||||++..|.++++.+... +.+ .+||||||||||++|.+|+.+|+++.. .+.++++|+||||.+.
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d------~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~ 74 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEE------TIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEF 74 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCC------EEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHH
Confidence 5799999999999999999988532 223 799999999999999999999999754 4568999999999986
Q ss_pred hhhhcC--------------ChHHHHHHhCCCCc---------------------------hhhhhhhhhhccCCceEEE
Q 002749 660 INALFG--------------FRLECIERMGENDG---------------------------IWAWTRFNQLFNCLPLAAL 698 (885)
Q Consensus 660 ~~~~~g--------------f~~e~~~~~~~~~~---------------------------~~~~~~~~~~f~~LP~~~~ 698 (885)
+....+ ...+.+..|+-... ...+..+..+++.||+...
T Consensus 75 l~~~~~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~ 154 (235)
T PHA02239 75 YNIMENVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYK 154 (235)
T ss_pred HHHHhCchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEE
Confidence 653311 11233445532110 0123455668899999988
Q ss_pred EcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCC
Q 002749 699 IEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDP 744 (885)
Q Consensus 699 i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP 744 (885)
.+ +++|||||+.|... +++ +-..+++|...
T Consensus 155 ~~-~~ifVHAGi~p~~~-~~~--------------q~~~~llWiR~ 184 (235)
T PHA02239 155 ED-KYIFSHSGGVSWKP-VEE--------------QTIDQLIWSRD 184 (235)
T ss_pred EC-CEEEEeCCCCCCCC-hhh--------------CCHhHeEEecc
Confidence 76 59999999988732 211 13468899874
No 57
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.71 E-value=1.8e-17 Score=172.90 Aligned_cols=120 Identities=25% Similarity=0.300 Sum_probs=86.4
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccch
Q 002749 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
++++||||||||+..|+++|+.+.+.+..+ .++|||||||||++|.||+.+|.+ .+++.||||||.+.+
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d-----~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~ 83 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETD-----LLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMAL 83 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCC-----EEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHH
Confidence 489999999999999999999987543322 799999999999999999998864 368999999999887
Q ss_pred hhhcCChHHHHHHhCCC-------CchhhhhhhhhhccCCceEEEEc---CeEEEecCCCC
Q 002749 661 NALFGFRLECIERMGEN-------DGIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 711 (885)
Q Consensus 661 ~~~~gf~~e~~~~~~~~-------~~~~~~~~~~~~f~~LP~~~~i~---~~il~vHgGi~ 711 (885)
.....-........+.. ..........++++.||+...+. .++++||||++
T Consensus 84 ~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 84 DAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 65421111111110000 00112234456889999998763 47899999983
No 58
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.69 E-value=4.9e-15 Score=156.68 Aligned_cols=284 Identities=17% Similarity=0.205 Sum_probs=213.5
Q ss_pred ecCCCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCC--CcEEEecCCCCCCc
Q 002749 21 DTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLT--RKWTRIRPAGEPPS 98 (885)
Q Consensus 21 ~~~~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~ 98 (885)
+..+++|.+--+-+...+ ++.+||-=|.. -...|.+|+.. ..|+++.... -.
T Consensus 28 ~~lPdlPvg~KnG~Ga~i------g~~~YVGLGs~------------------G~afy~ldL~~~~k~W~~~a~Fp--G~ 81 (381)
T COG3055 28 GQLPDLPVGFKNGAGALI------GDTVYVGLGSA------------------GTAFYVLDLKKPGKGWTKIADFP--GG 81 (381)
T ss_pred ccCCCCCcccccccccee------cceEEEEeccC------------------CccceehhhhcCCCCceEcccCC--Cc
Confidence 456788888877788888 78999876643 24577888875 5799997542 26
Q ss_pred ccCccEEEEECCEEEEEcCcCCCC----CccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCC
Q 002749 99 PRAAHAAAAVGTMVVFQGGIGPAG----HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDG 174 (885)
Q Consensus 99 ~R~~hsa~~~~~~lyv~GG~~~~~----~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~ 174 (885)
+|....+++++++||||||.+... ...+|+|+||+.+++ |+++.+ ..|..-.+++++.+.+..+|++||.+.
T Consensus 82 ~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ns--W~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~ 157 (381)
T COG3055 82 ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNS--WHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQ 157 (381)
T ss_pred ccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCCh--hheecc--ccccccccceeEecCCceEEEEccccH
Confidence 799999999999999999986333 356999999999955 999965 345568899998888889999999752
Q ss_pred C----------------------------------cccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEE
Q 002749 175 K----------------------------------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFL 220 (885)
Q Consensus 175 ~----------------------------------~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~ 220 (885)
. .....|+.|++.++ +|+.+.. .|.-..+.++++..++++.
T Consensus 158 ~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n--~W~~~G~---~pf~~~aGsa~~~~~n~~~ 232 (381)
T COG3055 158 NIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN--QWRNLGE---NPFYGNAGSAVVIKGNKLT 232 (381)
T ss_pred HhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--hhhhcCc---CcccCccCcceeecCCeEE
Confidence 1 13567899999999 9988743 3666666788888888888
Q ss_pred EEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCc------cceeEEEEECCEEEEEcccCCCC-------------
Q 002749 221 LCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSP------RYQHAAVFVGARLHVTGGALRGG------------- 281 (885)
Q Consensus 221 i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~------R~~hs~~~~~~~l~V~GG~~~~~------------- 281 (885)
++-|.-..+.....+++++...+ .-+|..+...++.. ..++-.-..++.++|.||.+-.+
T Consensus 233 lInGEiKpGLRt~~~k~~~~~~~-~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH 311 (381)
T COG3055 233 LINGEIKPGLRTAEVKQADFGGD-NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAH 311 (381)
T ss_pred EEcceecCCccccceeEEEeccC-ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccc
Confidence 88888777777888888887644 45777776543322 22333333478999999976222
Q ss_pred --CCccCCCcEEEEECCCCcEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEeCCEEEEEcCCC-CCCCCCceEEe
Q 002749 282 --RAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK-GDILLDDFLVA 358 (885)
Q Consensus 282 --~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~-~~~~~~D~~~l 358 (885)
......++|+++| .+.|+.+..+|. +++...++..++.||++||.. +...+..++.+
T Consensus 312 ~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~------------------~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l 371 (381)
T COG3055 312 EGLSKSWNSEVYIFD--NGSWKIVGELPQ------------------GLAYGVSLSYNNKVLLIGGETSGGKATTRVYSL 371 (381)
T ss_pred cchhhhhhceEEEEc--CCceeeecccCC------------------CccceEEEecCCcEEEEccccCCCeeeeeEEEE
Confidence 1222367899998 899999999855 899999999999999999974 45667777766
Q ss_pred eC
Q 002749 359 EN 360 (885)
Q Consensus 359 d~ 360 (885)
-.
T Consensus 372 ~~ 373 (381)
T COG3055 372 SW 373 (381)
T ss_pred EE
Confidence 43
No 59
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.66 E-value=3.2e-17 Score=177.60 Aligned_cols=314 Identities=17% Similarity=0.245 Sum_probs=216.6
Q ss_pred CCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccE
Q 002749 25 DAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHA 104 (885)
Q Consensus 25 ~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs 104 (885)
..|..|.||.|+..+. ++.||++||..+.. -..|+|.|....+.|+.++..+..|-.|++|-
T Consensus 256 ~~p~~RgGHQMV~~~~----~~CiYLYGGWdG~~--------------~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQ----TECVYLYGGWDGTQ--------------DLADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred cCccccCcceEEEeCC----CcEEEEecCcccch--------------hHHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 4688999999999843 56999999999876 47899999999999999998888899999999
Q ss_pred EEEECC--EEEEEcCcCCCC-----CccCcEEEEEecCCcceEEEEeec---CCCCCCccccEEEEECCc-EEEEEecCC
Q 002749 105 AAAVGT--MVVFQGGIGPAG-----HSTDDLYVLDLTNDKFKWHRVVVQ---GQGPGPRYGHVMDLVSQR-YLVSVSGND 173 (885)
Q Consensus 105 a~~~~~--~lyv~GG~~~~~-----~~~~dl~~~D~~~~~~~W~~v~~~---~~~p~~R~~ht~~~~~~~-~lyv~GG~~ 173 (885)
++.... ++|+.|-.-+.+ ..-.|+|+||.+++. |.-+.-. ...|...+.|.|++.+++ .+|||||..
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~--W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT--WMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEecCCce--eEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 999876 999999753222 234799999999955 8888632 247889999999999764 699999974
Q ss_pred C--C-cccCcEEEEecCCCCeeEEEcCCC-------CCCCCCcccceEEEe-cCCEEEEEccCCCCCCcccceEEEEcCC
Q 002749 174 G--K-RVLSDAWALDTAQKPYVWQRLNPE-------GDRPSARMYATASAR-SDGMFLLCGGRDASGAPLADAYGLLMHR 242 (885)
Q Consensus 174 ~--~-~~~ndv~~~d~~t~~~~W~~i~~~-------g~~P~~r~~hsa~~~-~~g~l~i~GG~~~~~~~l~dv~~~d~~~ 242 (885)
- . ..+.-+|.||+... .|..+... .+--..|.+|++-.. .+..+|+|||...... ++-.+.|++..
T Consensus 396 ~~~~e~~f~GLYaf~~~~~--~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E-l~L~f~y~I~~ 472 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQ--TWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE-LNLFFSYDIDS 472 (723)
T ss_pred ccCCCccccceEEEecCCc--cHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE-Eeehhcceecc
Confidence 2 2 34678999999998 88766321 112346777777655 5568999998755432 55555664432
Q ss_pred CCeeEEEe----CCCCCCCccceeEEEEE---CCEEEEEcccCCCCCC--ccCCCcEEEEECCCCcEEEccCCcccC---
Q 002749 243 NGQWEWTL----APGVAPSPRYQHAAVFV---GARLHVTGGALRGGRA--IEGEAAVAVLDTAAGVWLDRNGLVTSS--- 310 (885)
Q Consensus 243 ~~~W~w~~----~~~~~P~~R~~hs~~~~---~~~l~V~GG~~~~~~~--~~~~~~v~~yD~~t~~W~~v~~~~~~~--- 310 (885)
.+.-.-.. ...+.|.+-+..- +.. ...|++.-|....... ....+++|+|++.+..|..+..+...+
T Consensus 473 E~~~~~s~~~k~dsS~~pS~~f~qR-s~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~ 551 (723)
T KOG2437|consen 473 EHVDIISDGTKKDSSMVPSTGFTQR-ATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKDN 551 (723)
T ss_pred ccchhhhccCcCccccCCCcchhhh-cccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHHhhccC
Confidence 21100000 1122222222111 222 3567766665422211 123678999999999999887664321
Q ss_pred ---CCCCCCCCCCCCcCcccccceEEEEe--CCEEEEEcCCCCC-----CCCCceEEeeCCC
Q 002749 311 ---RTSKGHGEHDPSLELMRRCRHASASI--GVRIYIYGGLKGD-----ILLDDFLVAENSP 362 (885)
Q Consensus 311 ---~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~IyV~GG~~~~-----~~~~D~~~ld~~~ 362 (885)
.............++.+|++|+.++. ..-+|.+||..+. ..++|+|.++.-.
T Consensus 552 dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~r 613 (723)
T KOG2437|consen 552 DTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKICR 613 (723)
T ss_pred CceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhcc
Confidence 11123334456678899999988766 5679999998764 5578999887554
No 60
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.51 E-value=8.2e-13 Score=140.03 Aligned_cols=240 Identities=19% Similarity=0.324 Sum_probs=172.7
Q ss_pred cccceEecCCCCC-CCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCC
Q 002749 15 TLETYWDTDEDAP-GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA 93 (885)
Q Consensus 15 ~~~~~w~~~~~~P-~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 93 (885)
-....|+....-| .+|.+..++++ +++||+|||....... ...+.+|+|+||+.+++|.++.+.
T Consensus 67 ~~~k~W~~~a~FpG~~rnqa~~a~~------~~kLyvFgG~Gk~~~~---------~~~~~nd~Y~y~p~~nsW~kl~t~ 131 (381)
T COG3055 67 KPGKGWTKIADFPGGARNQAVAAVI------GGKLYVFGGYGKSVSS---------SPQVFNDAYRYDPSTNSWHKLDTR 131 (381)
T ss_pred cCCCCceEcccCCCcccccchheee------CCeEEEeeccccCCCC---------CceEeeeeEEecCCCChhheeccc
Confidence 3447899999988 58999999999 9999999998776652 123799999999999999999875
Q ss_pred CCCCcccCccEEEEECC-EEEEEcCcCCC---------------------------------CCccCcEEEEEecCCcce
Q 002749 94 GEPPSPRAAHAAAAVGT-MVVFQGGIGPA---------------------------------GHSTDDLYVLDLTNDKFK 139 (885)
Q Consensus 94 g~~P~~R~~hsa~~~~~-~lyv~GG~~~~---------------------------------~~~~~dl~~~D~~~~~~~ 139 (885)
.|....+++++..++ +||++||.+.. .....+++.||+.++ +
T Consensus 132 --sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n--~ 207 (381)
T COG3055 132 --SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN--Q 207 (381)
T ss_pred --cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--h
Confidence 356688899999987 99999996311 123478999999994 4
Q ss_pred EEEEeecCCCCC-CccccEEEEECCcEEEEEecCCC-CcccCcEEEEecCCCCeeEEEcCCCCCCCC---CcccceEEEe
Q 002749 140 WHRVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDG-KRVLSDAWALDTAQKPYVWQRLNPEGDRPS---ARMYATASAR 214 (885)
Q Consensus 140 W~~v~~~~~~p~-~R~~ht~~~~~~~~lyv~GG~~~-~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~---~r~~hsa~~~ 214 (885)
|+.+ +..|. ++++. ++++.++.+.++-|.-. .-+...++.++...+..+|.++.....++. .-...+....
T Consensus 208 W~~~---G~~pf~~~aGs-a~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~ 283 (381)
T COG3055 208 WRNL---GENPFYGNAGS-AVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGK 283 (381)
T ss_pred hhhc---CcCcccCccCc-ceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccce
Confidence 9998 75554 66664 44666667777877643 234556788888877779999976522111 1111222234
Q ss_pred cCCEEEEEccCCCC------------------CCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcc
Q 002749 215 SDGMFLLCGGRDAS------------------GAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGG 276 (885)
Q Consensus 215 ~~g~l~i~GG~~~~------------------~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG 276 (885)
.++.+++.||-.-. .....++|.++. + .|..+. ..|.++....++..++.||++||
T Consensus 284 s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~---g--~Wk~~G-eLp~~l~YG~s~~~nn~vl~IGG 357 (381)
T COG3055 284 SNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN---G--SWKIVG-ELPQGLAYGVSLSYNNKVLLIGG 357 (381)
T ss_pred eCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC---C--ceeeec-ccCCCccceEEEecCCcEEEEcc
Confidence 66778888885322 134567888882 3 565664 44778888888888999999999
Q ss_pred cCCCCCC
Q 002749 277 ALRGGRA 283 (885)
Q Consensus 277 ~~~~~~~ 283 (885)
...++..
T Consensus 358 E~~~Gka 364 (381)
T COG3055 358 ETSGGKA 364 (381)
T ss_pred ccCCCee
Confidence 9877754
No 61
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.43 E-value=1.2e-13 Score=150.19 Aligned_cols=205 Identities=19% Similarity=0.325 Sum_probs=153.7
Q ss_pred ceEEEEeecC-------CCCCCccccEEEEEC-CcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccc
Q 002749 138 FKWHRVVVQG-------QGPGPRYGHVMDLVS-QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYA 209 (885)
Q Consensus 138 ~~W~~v~~~~-------~~p~~R~~ht~~~~~-~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~h 209 (885)
..|.++..+. ..|..|.||.|+... ++.+|++||++|.+.+.|+|+|+...+ .|+.+...+..|..|.+|
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~--~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKEN--QWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcc--eeEEeecCCCCCcchhhh
Confidence 5688887655 678999999997764 359999999999999999999999999 999999888889999999
Q ss_pred eEEEec-CCEEEEEccCCCCC-----CcccceEEEEcCCCCeeEEEeCC-----CCCCCccceeEEEEECCE--EEEEcc
Q 002749 210 TASARS-DGMFLLCGGRDASG-----APLADAYGLLMHRNGQWEWTLAP-----GVAPSPRYQHAAVFVGAR--LHVTGG 276 (885)
Q Consensus 210 sa~~~~-~g~l~i~GG~~~~~-----~~l~dv~~~d~~~~~~W~w~~~~-----~~~P~~R~~hs~~~~~~~--l~V~GG 276 (885)
-++... ..++|+.|-.-... ..-.|+|.||..++ .|..+. .--|..-+.|.+++.+.+ +|||||
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~---~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN---TWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc---eeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 998643 34899998653221 34679999999988 555543 123678899999999877 999999
Q ss_pred cCCCCCCccCCCcEEEEECCCCcEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEeC--CEEEEEcCCCCCCCCCc
Q 002749 277 ALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIG--VRIYIYGGLKGDILLDD 354 (885)
Q Consensus 277 ~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~--~~IyV~GG~~~~~~~~D 354 (885)
+.-... ......++.||+....|..+...-....+ .+. .-..|.+|++-... ..+|+|||....+.++=
T Consensus 394 r~~~~~-e~~f~GLYaf~~~~~~w~~l~e~~~~~~~----vvE----~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L 464 (723)
T KOG2437|consen 394 RILTCN-EPQFSGLYAFNCQCQTWKLLREDSCNAGP----VVE----DIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNL 464 (723)
T ss_pred eeccCC-CccccceEEEecCCccHHHHHHHHhhcCc----chh----HHHHHHHHHHHhcCCCCeEEeccCcccceEEee
Confidence 854332 12267899999999999877643211000 000 12378888887774 58999999887766554
Q ss_pred eE
Q 002749 355 FL 356 (885)
Q Consensus 355 ~~ 356 (885)
+.
T Consensus 465 ~f 466 (723)
T KOG2437|consen 465 FF 466 (723)
T ss_pred hh
Confidence 33
No 62
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.96 E-value=3.9e-09 Score=104.08 Aligned_cols=162 Identities=23% Similarity=0.228 Sum_probs=99.6
Q ss_pred CeEEEecCCCCHHHH----HHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHH--HHHHhcCCCCEEEeccCC
Q 002749 582 PVKVFGDLHGQFGDL----MRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLL--LALKIEYPENVHLIRGNH 655 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L----~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll--~~lk~~~p~~v~llrGNH 655 (885)
+|+++||+|+..... ..+.........+ .+|++||++|++..+.+..... +..+...+..+++++|||
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPD------FIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTS------EEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCC------EEEeeccccccccccccchhhhccchhhhhcccccccccccc
Confidence 589999999999987 3333333222333 7899999999999998887765 555666778999999999
Q ss_pred cccchhhhcCChHHHHHHhCCC------------------------------CchhhhhhhhhhccCCceEEEEcCeEEE
Q 002749 656 EAADINALFGFRLECIERMGEN------------------------------DGIWAWTRFNQLFNCLPLAALIEKKIIC 705 (885)
Q Consensus 656 E~~~~~~~~gf~~e~~~~~~~~------------------------------~~~~~~~~~~~~f~~LP~~~~i~~~il~ 705 (885)
|.......+............. ............+............|++
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 155 (200)
T PF00149_consen 76 DYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVF 155 (200)
T ss_dssp SSHHHHHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEE
T ss_pred ccceeccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccccccceeEE
Confidence 9987654443332221110000 0000001111112222233344557888
Q ss_pred ecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHHHHHHHHcCCeEEEEe
Q 002749 706 MHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRA 785 (885)
Q Consensus 706 vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~ 785 (885)
+|.++.+....-... .....+.+.+..++++.++++++-|
T Consensus 156 ~H~p~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~G 195 (200)
T PF00149_consen 156 THHPPYSSSSDSSSY----------------------------------------GNESKGREALEELLKKYNVDLVLSG 195 (200)
T ss_dssp ESSSSSTTSSSTHHH----------------------------------------SSEEEHHHHHHHHHHHTTCSEEEEE
T ss_pred EecCCCCcccccccc----------------------------------------chhhccHHHHHHHHhhCCCCEEEeC
Confidence 888887653211111 0145788999999999999999999
Q ss_pred cccc
Q 002749 786 HECV 789 (885)
Q Consensus 786 H~~~ 789 (885)
|+-.
T Consensus 196 H~H~ 199 (200)
T PF00149_consen 196 HTHR 199 (200)
T ss_dssp SSSS
T ss_pred ceec
Confidence 9743
No 63
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.80 E-value=7.3e-09 Score=100.72 Aligned_cols=147 Identities=35% Similarity=0.502 Sum_probs=118.1
Q ss_pred chhhhcCChHHHHHHhCCCCchhhhhh---hhhhccCCceEEEEcC-eEEEecCCCCCCC-cCHHHhhcccCCc--ccCC
Q 002749 659 DINALFGFRLECIERMGENDGIWAWTR---FNQLFNCLPLAALIEK-KIICMHGGIGRSI-HSVEQIEKLERPI--TMDA 731 (885)
Q Consensus 659 ~~~~~~gf~~e~~~~~~~~~~~~~~~~---~~~~f~~LP~~~~i~~-~il~vHgGi~~~~-~~~~~i~~~~rp~--~~~~ 731 (885)
.+...+++.+++...++.. ..|.. +.++|+.||+.+++++ .++|.|+++++.+ ..+++++.+.|.. ....
T Consensus 2 ~l~~~~~~~~~~~~~~~~~---~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 78 (155)
T COG0639 2 LLTALYGFYDEKLRKYGEE---LEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPH 78 (155)
T ss_pred hhhhhhchhHHhhhhcCCc---eeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCC
Confidence 3456778888877777542 35766 9999999999999988 9999999999976 6788888887765 3333
Q ss_pred CCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEecccccc
Q 002749 732 GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYC 811 (885)
Q Consensus 732 ~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~ 811 (885)
.+ ...+.+|++|... ....|.+++||.+. .| .+....|+..+....+.|+|+.+..++...+.+..+|.|++++||
T Consensus 79 ~g-~~~~~~~~~~~~~-~~~~w~~~~~g~~~-~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 79 AG-HTHDLLWSDPDGG-DRRIWNPGPRGVPR-DG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred cc-ccccccCCCCCCC-cccccccCCCCCCc-cc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 33 5566699998752 24679999999883 34 688889998888888999999999999988877899999999997
Q ss_pred C
Q 002749 812 G 812 (885)
Q Consensus 812 ~ 812 (885)
.
T Consensus 155 ~ 155 (155)
T COG0639 155 Y 155 (155)
T ss_pred C
Confidence 3
No 64
>PF13964 Kelch_6: Kelch motif
Probab=98.71 E-value=3.1e-08 Score=78.02 Aligned_cols=50 Identities=38% Similarity=0.778 Sum_probs=43.3
Q ss_pred CccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCccc
Q 002749 29 PRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPR 100 (885)
Q Consensus 29 pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R 100 (885)
||.+|+++++ +++||||||...... .++++++||+.+++|++++++ |.||
T Consensus 1 pR~~~s~v~~------~~~iyv~GG~~~~~~-------------~~~~v~~yd~~t~~W~~~~~m---p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV------GGKIYVFGGYDNSGK-------------YSNDVERYDPETNTWEQLPPM---PTPR 50 (50)
T ss_pred CCccCEEEEE------CCEEEEECCCCCCCC-------------ccccEEEEcCCCCcEEECCCC---CCCC
Confidence 7999999999 999999999987522 689999999999999999854 4665
No 65
>PLN02772 guanylate kinase
Probab=98.70 E-value=8.3e-08 Score=106.40 Aligned_cols=87 Identities=17% Similarity=0.342 Sum_probs=76.1
Q ss_pred CCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEE
Q 002749 27 PGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAA 106 (885)
Q Consensus 27 P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~ 106 (885)
+.|++.|+++.+ ++++|||||...... ..+.+|+||..+++|...+..|.+|.||.+|+++
T Consensus 22 ~~~~~~~tav~i------gdk~yv~GG~~d~~~-------------~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~ 82 (398)
T PLN02772 22 VKPKNRETSVTI------GDKTYVIGGNHEGNT-------------LSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAV 82 (398)
T ss_pred CCCCCcceeEEE------CCEEEEEcccCCCcc-------------ccceEEEEECCCCcEecccccCCCCCCCCcceEE
Confidence 469999999999 999999999766332 5799999999999999999999999999999999
Q ss_pred EEC-CEEEEEcCcCCCCCccCcEEEEEecC
Q 002749 107 AVG-TMVVFQGGIGPAGHSTDDLYVLDLTN 135 (885)
Q Consensus 107 ~~~-~~lyv~GG~~~~~~~~~dl~~~D~~~ 135 (885)
+++ ++|+|+++.++. .+++|.+.+++
T Consensus 83 v~~~~rilv~~~~~~~---~~~~w~l~~~t 109 (398)
T PLN02772 83 VLNKDRILVIKKGSAP---DDSIWFLEVDT 109 (398)
T ss_pred EECCceEEEEeCCCCC---ccceEEEEcCC
Confidence 995 699999986544 48899998877
No 66
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.68 E-value=5.9e-07 Score=88.71 Aligned_cols=60 Identities=23% Similarity=0.338 Sum_probs=48.6
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccc
Q 002749 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
++.+++|+||++..+.++++.+.. .+ .++++||+++++.... ++ ....+++++||||...
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d------~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~~ 60 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VD------LIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGEV 60 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CC------EEEECCccccccccch--------hh--cCCcEEEEeCCCCCcC
Confidence 478999999999999999998754 23 7999999999998765 11 2246999999999753
No 67
>PF13964 Kelch_6: Kelch motif
Probab=98.66 E-value=5.3e-08 Score=76.70 Aligned_cols=50 Identities=30% Similarity=0.583 Sum_probs=45.0
Q ss_pred ccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCc
Q 002749 99 PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 99 ~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R 153 (885)
||.+|++++++++|||+||.......++++++||+.++ +|+++ +++|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~---~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETN--TWEQL---PPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCC--cEEEC---CCCCCCC
Confidence 69999999999999999998765778999999999995 49999 7888887
No 68
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.63 E-value=7.3e-08 Score=75.56 Aligned_cols=49 Identities=41% Similarity=0.783 Sum_probs=41.4
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE
Q 002749 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV 108 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~ 108 (885)
+++||||||....... ..+|+|+||+.+++|+++ ++.|.||++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~------------~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGT------------RLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCC------------EecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 4799999999853221 689999999999999988 567899999999874
No 69
>PLN02772 guanylate kinase
Probab=98.62 E-value=1.8e-07 Score=103.85 Aligned_cols=90 Identities=17% Similarity=0.330 Sum_probs=78.9
Q ss_pred CCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCC
Q 002749 96 PPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGK 175 (885)
Q Consensus 96 ~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~ 175 (885)
-+.|+.+|+++++++++||+||.+..+..++++|+||..+ ++|....+.|..|.+|.||+++++++..|+|+++-...
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t--~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~ 98 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKIT--NNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP 98 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCC--CcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC
Confidence 3468999999999999999999877666789999999999 66999999999999999999999998899999875433
Q ss_pred cccCcEEEEecCCC
Q 002749 176 RVLSDAWALDTAQK 189 (885)
Q Consensus 176 ~~~ndv~~~d~~t~ 189 (885)
-.++|.+.+.|.
T Consensus 99 --~~~~w~l~~~t~ 110 (398)
T PLN02772 99 --DDSIWFLEVDTP 110 (398)
T ss_pred --ccceEEEEcCCH
Confidence 378999988874
No 70
>PRK09453 phosphodiesterase; Provisional
Probab=98.62 E-value=1.2e-07 Score=96.53 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=53.3
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC--------hHHHHHHHHHHHhcCCCCEEEecc
Q 002749 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH--------SLETITLLLALKIEYPENVHLIRG 653 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~--------s~evl~ll~~lk~~~p~~v~llrG 653 (885)
++.|++|+||++..|.++++.+.....+ .++++||++|+|+. ..+++.+|..+ ...+++++|
T Consensus 2 ri~viSD~Hg~~~~~~~~l~~~~~~~~d------~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~G 71 (182)
T PRK09453 2 KLMFASDTHGSLPATEKALELFAQSGAD------WLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVRG 71 (182)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhcCCC------EEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEcc
Confidence 5899999999999999999887443333 79999999999873 45666666544 247999999
Q ss_pred CCcccc
Q 002749 654 NHEAAD 659 (885)
Q Consensus 654 NHE~~~ 659 (885)
|||...
T Consensus 72 NhD~~~ 77 (182)
T PRK09453 72 NCDSEV 77 (182)
T ss_pred CCcchh
Confidence 999743
No 71
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.58 E-value=9e-07 Score=87.06 Aligned_cols=60 Identities=30% Similarity=0.495 Sum_probs=44.3
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccc
Q 002749 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
+|.++||+|++...+.++++.+. ..+ .++++||++|+ .+++.++..+ .++.++||||...
T Consensus 2 ki~~~sD~H~~~~~~~~~~~~~~--~~d------~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~ 61 (156)
T PF12850_consen 2 KIAVISDLHGNLDALEAVLEYIN--EPD------FVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWA 61 (156)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHT--TES------EEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTH
T ss_pred EEEEEeCCCCChhHHHHHHHHhc--CCC------EEEECCCchhH----HHHHHHHhcC------CEEEEeCCccccc
Confidence 58999999999999999999982 122 68899999993 7777777555 6999999999644
No 72
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.51 E-value=2.3e-07 Score=72.68 Aligned_cols=48 Identities=33% Similarity=0.719 Sum_probs=42.6
Q ss_pred CCEEEEEcCcC-CCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEE
Q 002749 109 GTMVVFQGGIG-PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV 161 (885)
Q Consensus 109 ~~~lyv~GG~~-~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~ 161 (885)
+++|||+||.. .....++|+|+||+.+ .+|+++ +.+|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~--~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDT--NTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCC--CEEEEC---CCCCCCccceEEEEC
Confidence 57999999997 5678899999999998 559999 889999999999864
No 73
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.48 E-value=3.1e-06 Score=83.96 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=47.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCC-CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCccc
Q 002749 582 PVKVFGDLHGQFGDLMRLFDEYGFP-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~-~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
++.|++|+||++.++..+++..... ..+ .++++||++ +.+++.+|..+. ..++.++||||..
T Consensus 2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~~ 64 (158)
T TIGR00040 2 KILVISDTHGPLRATELPVELFNLESNVD------LVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDGE 64 (158)
T ss_pred EEEEEecccCCcchhHhHHHHHhhccCCC------EEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCch
Confidence 5899999999998877766665543 333 789999999 467777776542 3599999999983
No 74
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.48 E-value=3.5e-07 Score=71.69 Aligned_cols=49 Identities=33% Similarity=0.731 Sum_probs=40.4
Q ss_pred CccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCC
Q 002749 29 PRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAG 94 (885)
Q Consensus 29 pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 94 (885)
||.+|+++++ +++||||||+..... ....+++++||+.+++|+.+++++
T Consensus 1 ~r~~hs~~~~------~~kiyv~GG~~~~~~-----------~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVL------DGKIYVFGGYGTDNG-----------GSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEE------CCEEEEECCcccCCC-----------CcccceeEEEECCCCEEeecCCCC
Confidence 7999999999 999999999922221 126899999999999999998653
No 75
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.45 E-value=4.4e-07 Score=71.14 Aligned_cols=48 Identities=29% Similarity=0.477 Sum_probs=39.8
Q ss_pred ccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCC
Q 002749 258 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 258 ~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
||++|++++++++||||||+. ........+++++||+++.+|+.++.+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~-~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYG-TDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcc-cCCCCcccceeEEEECCCCEEeecCCC
Confidence 689999999999999999991 111223478999999999999999876
No 76
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.40 E-value=3.3e-07 Score=71.75 Aligned_cols=46 Identities=30% Similarity=0.647 Sum_probs=30.8
Q ss_pred CccccEEEEECCcEEEEEecCCCC-cccCcEEEEecCCCCeeEEEcCCC
Q 002749 152 PRYGHVMDLVSQRYLVSVSGNDGK-RVLSDAWALDTAQKPYVWQRLNPE 199 (885)
Q Consensus 152 ~R~~ht~~~~~~~~lyv~GG~~~~-~~~ndv~~~d~~t~~~~W~~i~~~ 199 (885)
||++|+++.+.++.+|||||.+.. ..++|+|+||++++ +|+++.++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEECCCC
Confidence 699999999977799999999876 68999999999999 99999443
No 77
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.39 E-value=2.4e-06 Score=82.42 Aligned_cols=118 Identities=21% Similarity=0.258 Sum_probs=76.9
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH--HHHHHHHHHHhcCCCCEEEeccCCcccc
Q 002749 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL--ETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~--evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
++.+++|+||++. . ......+ .++++||+++++...- +.+.++..++ . ..++++.||||...
T Consensus 1 ~i~~isD~H~~~~----~---~~~~~~D------~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~-~~~~~v~GNHD~~~ 64 (135)
T cd07379 1 RFVCISDTHSRHR----T---ISIPDGD------VLIHAGDLTERGTLEELQKFLDWLKSLP--H-PHKIVIAGNHDLTL 64 (135)
T ss_pred CEEEEeCCCCCCC----c---CcCCCCC------EEEECCCCCCCCCHHHHHHHHHHHHhCC--C-CeEEEEECCCCCcC
Confidence 4789999999987 1 1122222 6888999999986532 2344443332 1 23678999999642
Q ss_pred hhhhcCChHHHHHHhCCCCchhhhhhhhhhccCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhcc
Q 002749 660 INALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDL 739 (885)
Q Consensus 660 ~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dl 739 (885)
. .-+.+++++||.+.... +.
T Consensus 65 ~-------------------------------------~~~~~ilv~H~~p~~~~-----------------------~~ 84 (135)
T cd07379 65 D-------------------------------------PEDTDILVTHGPPYGHL-----------------------DL 84 (135)
T ss_pred C-------------------------------------CCCCEEEEECCCCCcCc-----------------------cc
Confidence 1 11346999999542210 00
Q ss_pred ccCCCCCCCCCCCcccCCCCCceeEeCHHHHHHHHHHcCCeEEEEeccccccceE
Q 002749 740 LWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 794 (885)
Q Consensus 740 lWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 794 (885)
++ + . ...|.+.+.+++++.+.+++|-||.-.+.|++
T Consensus 85 ~~--~----------------~-~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 85 VS--S----------------G-QRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred cc--c----------------C-cccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 00 0 0 13577889999999999999999999988876
No 78
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.38 E-value=4.4e-06 Score=87.27 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=56.0
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCccc
Q 002749 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
+|.+++||||++..|.++++.......+ .+|++||++++|+..-++..++..+.. .+..++.++||||..
T Consensus 6 kIl~iSDiHgn~~~le~l~~~~~~~~~D------~vv~~GDl~~~g~~~~~~~~~l~~l~~-l~~pv~~V~GNhD~~ 75 (224)
T cd07388 6 YVLATSNPKGDLEALEKLVGLAPETGAD------AIVLIGNLLPKAAKSEDYAAFFRILGE-AHLPTFYVPGPQDAP 75 (224)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhhcCCC------EEEECCCCCCCCCCHHHHHHHHHHHHh-cCCceEEEcCCCChH
Confidence 5899999999999999999876433333 799999999999877777777766643 234699999999975
No 79
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.35 E-value=4.9e-07 Score=70.08 Aligned_cols=46 Identities=37% Similarity=0.697 Sum_probs=40.4
Q ss_pred CccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCC
Q 002749 29 PRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA 93 (885)
Q Consensus 29 pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 93 (885)
||.+|+++++ +++||++||...... .++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~------~~~iyv~GG~~~~~~-------------~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVV------GNKIYVIGGYDGNNQ-------------PTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEE------TTEEEEEEEBESTSS-------------BEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEE------CCEEEEEeeecccCc-------------eeeeEEEEeCCCCEEEEcCCC
Confidence 7999999999 999999999998332 789999999999999999754
No 80
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.35 E-value=2.4e-06 Score=89.38 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=71.2
Q ss_pred CeEEEecCCCCHHHHH-HHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccch
Q 002749 582 PVKVFGDLHGQFGDLM-RLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~-~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
+|+++|||||++.... +.++..+ + + .+||+||+++. +.+++..|.++ +..++.++||||....
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~~--p-D------~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLLQ--P-D------LVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYD 65 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhccC--C-C------EEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCccccc
Confidence 5899999999987642 3333322 2 2 79999999864 56776666554 3458999999997543
Q ss_pred hhh---cCCh------------------------------------------HHHHHHhCCCCchhhhhhhhhhccCCce
Q 002749 661 NAL---FGFR------------------------------------------LECIERMGENDGIWAWTRFNQLFNCLPL 695 (885)
Q Consensus 661 ~~~---~gf~------------------------------------------~e~~~~~~~~~~~~~~~~~~~~f~~LP~ 695 (885)
... +... .++...|+ ....++.+..+++.++.
T Consensus 66 ~~~~~k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fg---i~s~~eA~~~ive~~~~ 142 (238)
T cd07397 66 ATFRKKGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYG---VISLEESAQRIIAAAKK 142 (238)
T ss_pred ccccchHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhC---CCCHHHHHHHHHHHhhh
Confidence 210 0001 23444443 12345566677777763
Q ss_pred EEEEcCeEEEecCCCCCC
Q 002749 696 AALIEKKIICMHGGIGRS 713 (885)
Q Consensus 696 ~~~i~~~il~vHgGi~~~ 713 (885)
+......||+.|+++.-.
T Consensus 143 ~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 143 APPDLPLILLAHNGPSGL 160 (238)
T ss_pred cCCCCCeEEEeCcCCcCC
Confidence 333444799999998654
No 81
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.33 E-value=6.5e-07 Score=69.38 Aligned_cols=47 Identities=32% Similarity=0.475 Sum_probs=40.2
Q ss_pred ccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCCc
Q 002749 258 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLV 307 (885)
Q Consensus 258 ~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~ 307 (885)
||.+|+++.++++|||+||.... ....+++++||+.+++|+.++++|
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN---NQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST---SSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeeccc---CceeeeEEEEeCCCCEEEEcCCCC
Confidence 68999999999999999998772 233789999999999999998763
No 82
>PF13854 Kelch_5: Kelch motif
Probab=98.33 E-value=8.4e-07 Score=67.08 Aligned_cols=39 Identities=28% Similarity=0.558 Sum_probs=35.3
Q ss_pred cccccceEEEEeCCEEEEEcCCC--CCCCCCceEEeeCCCC
Q 002749 325 LMRRCRHASASIGVRIYIYGGLK--GDILLDDFLVAENSPF 363 (885)
Q Consensus 325 p~~R~~hs~~~~~~~IyV~GG~~--~~~~~~D~~~ld~~~~ 363 (885)
|.+|.+|+++.++++||||||.+ ....++|+|+||+.++
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 56999999999999999999998 4788999999998764
No 83
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.26 E-value=9.5e-07 Score=69.15 Aligned_cols=47 Identities=28% Similarity=0.632 Sum_probs=30.9
Q ss_pred ccCccEEEEE-CCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCC
Q 002749 99 PRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP 150 (885)
Q Consensus 99 ~R~~hsa~~~-~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p 150 (885)
||++|+++.+ +++|||+||....+..++|+|+||+.+ .+|+++ +++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~--~~W~~~---~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIET--NTWTRL---PSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTT--TEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCC--CEEEEC---CCCC
Confidence 6999999999 589999999987778999999999999 459999 5555
No 84
>PF13854 Kelch_5: Kelch motif
Probab=98.25 E-value=1.8e-06 Score=65.22 Aligned_cols=40 Identities=43% Similarity=0.696 Sum_probs=36.3
Q ss_pred CCcccCccEEEEECCEEEEEcCcC-CCCCccCcEEEEEecC
Q 002749 96 PPSPRAAHAAAAVGTMVVFQGGIG-PAGHSTDDLYVLDLTN 135 (885)
Q Consensus 96 ~P~~R~~hsa~~~~~~lyv~GG~~-~~~~~~~dl~~~D~~~ 135 (885)
+|.+|++|++++++++||++||.. .....++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 478999999999999999999997 4778899999999876
No 85
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.23 E-value=0.00017 Score=75.12 Aligned_cols=126 Identities=17% Similarity=0.303 Sum_probs=86.2
Q ss_pred EEEEEcCcCCCCCccCcEEEEEecCCc------ceEEEEeecCCCCCCccccEEEEE---CCcEEEEEecCCCC------
Q 002749 111 MVVFQGGIGPAGHSTDDLYVLDLTNDK------FKWHRVVVQGQGPGPRYGHVMDLV---SQRYLVSVSGNDGK------ 175 (885)
Q Consensus 111 ~lyv~GG~~~~~~~~~dl~~~D~~~~~------~~W~~v~~~~~~p~~R~~ht~~~~---~~~~lyv~GG~~~~------ 175 (885)
..++.||..+.+..++.+|++.+++.. ..+..-...|..|.+||||++.++ ++...++|||....
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 778889999999999999999887632 233333456999999999999888 34588899997421
Q ss_pred --------cccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCC-CcccceEEEEc
Q 002749 176 --------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG-APLADAYGLLM 240 (885)
Q Consensus 176 --------~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~-~~l~dv~~~d~ 240 (885)
.+.-.|+.+|++-+ .. ......+.--.-.+|.+.+ .++.+|+.||..-.. ...-.++++..
T Consensus 120 TenWNsVvDC~P~VfLiDleFG--C~-tah~lpEl~dG~SFHvsla-r~D~VYilGGHsl~sd~Rpp~l~rlkV 189 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFG--CC-TAHTLPELQDGQSFHVSLA-RNDCVYILGGHSLESDSRPPRLYRLKV 189 (337)
T ss_pred hhhcceeccCCCeEEEEecccc--cc-ccccchhhcCCeEEEEEEe-cCceEEEEccEEccCCCCCCcEEEEEE
Confidence 13456778888776 32 2233334445566777765 566899999985442 22344565543
No 86
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.22 E-value=1.1e-05 Score=75.76 Aligned_cols=117 Identities=23% Similarity=0.350 Sum_probs=82.9
Q ss_pred EEEecCCCCHHHHHHHH--HHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchh
Q 002749 584 KVFGDLHGQFGDLMRLF--DEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 661 (885)
Q Consensus 584 ~vvGDiHG~~~~L~~il--~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 661 (885)
+++||+|+......... ........+ .+|++||+++.+....+........+......++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~------~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPD------FVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCC------EEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----
Confidence 47999999999988765 222222222 68999999999998887766544444456678999999999
Q ss_pred hhcCChHHHHHHhCCCCchhhhhhhhhhccCCceEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhcccc
Q 002749 662 ALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLW 741 (885)
Q Consensus 662 ~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllW 741 (885)
++++|..+.+.......
T Consensus 70 -----------------------------------------i~~~H~~~~~~~~~~~~---------------------- 86 (131)
T cd00838 70 -----------------------------------------ILLTHGPPYDPLDELSP---------------------- 86 (131)
T ss_pred -----------------------------------------EEEeccCCCCCchhhcc----------------------
Confidence 88899888655210000
Q ss_pred CCCCCCCCCCCcccCCCCCceeEeCHHHHHHHHHHcCCeEEEEeccccccceE
Q 002749 742 SDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 794 (885)
Q Consensus 742 sdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 794 (885)
. .......+...+...+.+++|-||.-....+.
T Consensus 87 ~--------------------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 87 D--------------------EDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred c--------------------chhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 0 00155778888999999999999987755544
No 87
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.11 E-value=0.00015 Score=76.27 Aligned_cols=152 Identities=14% Similarity=0.213 Sum_probs=99.7
Q ss_pred EEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCC----CCeeEEEcCCCCCCC
Q 002749 128 LYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQ----KPYVWQRLNPEGDRP 203 (885)
Q Consensus 128 l~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t----~~~~W~~i~~~g~~P 203 (885)
-..||+.+++ ++.+. ...--++.+.+.+.++.+++.||.... ...+-.|++.+ . .|.+.... +-
T Consensus 48 s~~yD~~tn~--~rpl~----v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~--~w~e~~~~--m~ 115 (243)
T PF07250_consen 48 SVEYDPNTNT--FRPLT----VQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTC--DWTESPND--MQ 115 (243)
T ss_pred EEEEecCCCc--EEecc----CCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCC--CceECccc--cc
Confidence 3468888854 77773 234444444556677889999998552 34566777765 3 68876532 46
Q ss_pred CCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCC---CCeeEEEeCC---CCCCCccceeEEEEECCEEEEEccc
Q 002749 204 SARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHR---NGQWEWTLAP---GVAPSPRYQHAAVFVGARLHVTGGA 277 (885)
Q Consensus 204 ~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~---~~~W~w~~~~---~~~P~~R~~hs~~~~~~~l~V~GG~ 277 (885)
.+|.|.++....||+++|+||.. +..+.+.+.. ...+.|..+. ...+...|=+....-+|+||+++..
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~------~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSN------NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred CCCccccceECCCCCEEEEeCcC------CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 89999999999999999999986 2334444431 2223332222 1223344444555559999999883
Q ss_pred CCCCCCccCCCcEEEEECCCCcE-EEccCCcc
Q 002749 278 LRGGRAIEGEAAVAVLDTAAGVW-LDRNGLVT 308 (885)
Q Consensus 278 ~~~~~~~~~~~~v~~yD~~t~~W-~~v~~~~~ 308 (885)
...+||..++++ +.++.+|.
T Consensus 190 -----------~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 190 -----------GSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred -----------CcEEEeCCCCeEEeeCCCCCC
Confidence 357899999987 78888866
No 88
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.08 E-value=0.00017 Score=73.09 Aligned_cols=59 Identities=27% Similarity=0.437 Sum_probs=42.4
Q ss_pred CeEEEecCC-CCHH-----HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCC
Q 002749 582 PVKVFGDLH-GQFG-----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 655 (885)
Q Consensus 582 ~i~vvGDiH-G~~~-----~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 655 (885)
.|.||+|.| |.-. .+.++++. ...+ .++.+||+++ .+++.+|..++ ..++.++|||
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~---~~~d------~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~ 62 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVP---GKIQ------HVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDF 62 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhcc---CCCC------EEEECCCCCC-----HHHHHHHHhhC----CceEEEECCC
Confidence 378999999 6543 35555544 2223 7899999987 77777776652 2589999999
Q ss_pred ccc
Q 002749 656 EAA 658 (885)
Q Consensus 656 E~~ 658 (885)
|..
T Consensus 63 D~~ 65 (178)
T cd07394 63 DEN 65 (178)
T ss_pred Ccc
Confidence 963
No 89
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.04 E-value=0.0015 Score=68.38 Aligned_cols=185 Identities=16% Similarity=0.188 Sum_probs=106.4
Q ss_pred CCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCc--------EEEecCCCC
Q 002749 24 EDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRK--------WTRIRPAGE 95 (885)
Q Consensus 24 ~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~--------W~~l~~~g~ 95 (885)
.-+|+.|+-..+.+-....+.....++-||.+.... .++.+|++...+.. ++.-.-.|+
T Consensus 17 CYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE-------------lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGd 83 (337)
T PF03089_consen 17 CYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE-------------LSSSLYILSVDSRGCNKKVTLCCQEKELVGD 83 (337)
T ss_pred ccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc-------------cccceEEEEeecCCCCceeEEEEecceecCC
Confidence 347777765544442334444556678899988775 67889998876543 333344688
Q ss_pred CCcccCccEEEEE----CCEEEEEcCcC--CCCC-----------ccCcEEEEEecCCcceEEEEeecCCCCCCccccEE
Q 002749 96 PPSPRAAHAAAAV----GTMVVFQGGIG--PAGH-----------STDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVM 158 (885)
Q Consensus 96 ~P~~R~~hsa~~~----~~~lyv~GG~~--~~~~-----------~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~ 158 (885)
.|.+|++|++.++ ...+++|||.+ +.+. ....+|.+|+.-.. +... +...+...-+.|.+
T Consensus 84 vP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC--~tah-~lpEl~dG~SFHvs 160 (337)
T PF03089_consen 84 VPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGC--CTAH-TLPELQDGQSFHVS 160 (337)
T ss_pred CCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccc--cccc-cchhhcCCeEEEEE
Confidence 9999999999998 34888999964 2221 22467777887643 2211 11344455666666
Q ss_pred EEECCcEEEEEecCCCC--cccCcEEEEecCC--CCeeEEEcCCCCCCCCCcccceEEE--ecCCEEEEEccCCCCC
Q 002749 159 DLVSQRYLVSVSGNDGK--RVLSDAWALDTAQ--KPYVWQRLNPEGDRPSARMYATASA--RSDGMFLLCGGRDASG 229 (885)
Q Consensus 159 ~~~~~~~lyv~GG~~~~--~~~ndv~~~d~~t--~~~~W~~i~~~g~~P~~r~~hsa~~--~~~g~l~i~GG~~~~~ 229 (885)
..-+ +.+|++||..-. .+--.++++..+- .. -+-..... +......+|++ .....++|.||+..+.
T Consensus 161 lar~-D~VYilGGHsl~sd~Rpp~l~rlkVdLllGS-P~vsC~vl---~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 161 LARN-DCVYILGGHSLESDSRPPRLYRLKVDLLLGS-PAVSCTVL---QGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred EecC-ceEEEEccEEccCCCCCCcEEEEEEeecCCC-ceeEEEEC---CCCceEeeeeEeecCCCceEEEecccccc
Confidence 4444 599999996432 2334455543321 10 01111111 12222223332 2445788889986654
No 90
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.94 E-value=0.00017 Score=73.21 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=44.5
Q ss_pred eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-HHHHHHHHHHHhcCCCCEEEeccCCcccc
Q 002749 583 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-LETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 583 i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
|.+++||||++..+.. ........+ -+|+.||++++|... .+.+..|. ..+..++.+.||||...
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D------~vv~~GDl~~~~~~~~~~~~~~l~----~~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEAD------AVIVAGDITNFGGKEAAVEINLLL----AIGVPVLAVPGNCDTPE 66 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCC------EEEECCCccCcCCHHHHHHHHHHH----hcCCCEEEEcCCCCCHH
Confidence 5789999999998876 222222222 688999999999763 33333332 23456999999999754
No 91
>smart00612 Kelch Kelch domain.
Probab=97.85 E-value=2.2e-05 Score=60.24 Aligned_cols=47 Identities=32% Similarity=0.601 Sum_probs=38.8
Q ss_pred EEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECC
Q 002749 47 RLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGT 110 (885)
Q Consensus 47 ~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~ 110 (885)
+||++||..... .++++++||+.+++|+.+++ +|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~--------------~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ--------------RLKSVEVYDPETNKWTPLPS---MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc--------------eeeeEEEECCCCCeEccCCC---CCCccccceEEEeCC
Confidence 489999986422 57899999999999998874 558999999998764
No 92
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.81 E-value=0.0018 Score=68.28 Aligned_cols=164 Identities=13% Similarity=0.149 Sum_probs=101.5
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecC--CcceEEEEeecCCCCC
Q 002749 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTN--DKFKWHRVVVQGQGPG 151 (885)
Q Consensus 74 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~--~~~~W~~v~~~~~~p~ 151 (885)
...-..||+.+++++.+....+. =.++|+ ..-++.+++.||... ....+-.|++.+ ....|.... ..+-.
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~--FCSgg~-~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~--~~m~~ 116 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDT--FCSGGA-FLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESP--NDMQS 116 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCC--cccCcC-CCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECc--ccccC
Confidence 33456799999999998765431 123332 223679999999754 234566777654 223487773 34889
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEecC---CCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCC
Q 002749 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTA---QKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS 228 (885)
Q Consensus 152 ~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~---t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~ 228 (885)
+|.+.+++.+.++.++|+||.... ..+.+... ..++.|..+......-..-.|..+....+|+||+++..
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--- 189 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNNP----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--- 189 (243)
T ss_pred CCccccceECCCCCEEEEeCcCCC----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---
Confidence 999999999999999999998722 22333321 12234433332211123344556677899999999874
Q ss_pred CCcccceEEEEcCCCCeeEE-EeCCCCCCCccc
Q 002749 229 GAPLADAYGLLMHRNGQWEW-TLAPGVAPSPRY 260 (885)
Q Consensus 229 ~~~l~dv~~~d~~~~~~W~w-~~~~~~~P~~R~ 260 (885)
+...||...+ ++ ..++.++-.+|.
T Consensus 190 -----~s~i~d~~~n---~v~~~lP~lPg~~R~ 214 (243)
T PF07250_consen 190 -----GSIIYDYKTN---TVVRTLPDLPGGPRN 214 (243)
T ss_pred -----CcEEEeCCCC---eEEeeCCCCCCCcee
Confidence 3456677766 44 455555444554
No 93
>smart00612 Kelch Kelch domain.
Probab=97.78 E-value=4.1e-05 Score=58.75 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=39.2
Q ss_pred EEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEec
Q 002749 165 YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARS 215 (885)
Q Consensus 165 ~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~ 215 (885)
.+|++||.++...++++++||+.++ +|+.++++ |.+|..|+++...
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~---~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETN--KWTPLPSM---PTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCC--eEccCCCC---CCccccceEEEeC
Confidence 3899999987778899999999999 99998765 7889889887653
No 94
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.71 E-value=0.00034 Score=66.94 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=39.9
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCc
Q 002749 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 656 (885)
Q Consensus 584 ~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 656 (885)
.|++|.||..+.+.++.... ...+ .++++||+. .+++.++..++ ...++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~~--~~~d------~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVRL--EGVD------LILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD 56 (129)
T ss_pred CeeccccCccccchHHHhhC--CCCC------EEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc
Confidence 38999999988777776652 2223 799999984 34556665542 235899999999
No 95
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.61 E-value=0.00019 Score=76.46 Aligned_cols=206 Identities=18% Similarity=0.234 Sum_probs=102.2
Q ss_pred CeEEEecCCCCH------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCC-------CCChHHHHHHHHHHHhcCCCCE
Q 002749 582 PVKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDR-------GQHSLETITLLLALKIEYPENV 648 (885)
Q Consensus 582 ~i~vvGDiHG~~------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDR-------G~~s~evl~ll~~lk~~~p~~v 648 (885)
++++++|+|... ..|+++++..... .+ .++++||++|. .+...+++.+|..|+.. +-.+
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~-~d------~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v 73 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEARQ-AD------ALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPC 73 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhhcc-CC------EEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeE
Confidence 589999999542 2455555432211 22 78999999985 23346777777777633 3469
Q ss_pred EEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhccCCceEEEE-cCeEEEecCCCCCCCcCHHH-hhcccC-
Q 002749 649 HLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRSIHSVEQ-IEKLER- 725 (885)
Q Consensus 649 ~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i-~~~il~vHgGi~~~~~~~~~-i~~~~r- 725 (885)
++++||||..... ...+..+ . .++.. |....+ +.+++++||-.-+.....-+ ++++-|
T Consensus 74 ~~v~GNHD~~~~~-------~~~~~~g----~-------~~l~~-~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~ 134 (241)
T PRK05340 74 YFMHGNRDFLLGK-------RFAKAAG----M-------TLLPD-PSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRN 134 (241)
T ss_pred EEEeCCCchhhhH-------HHHHhCC----C-------EEeCC-cEEEEECCEEEEEECCcccccCCHHHHHHHHHHhC
Confidence 9999999974311 1111111 1 11111 222233 34799999987653221111 222212
Q ss_pred CcccCCCCcchhccccCCCCCC-CCC-CCcc-----cCC-CCCceeEeCHHHHHHHHHHcCCeEEEEeccccccceEEec
Q 002749 726 PITMDAGSIILMDLLWSDPTEN-DSI-EGLR-----PNA-RGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFA 797 (885)
Q Consensus 726 p~~~~~~~~~~~dllWsdP~~~-~~~-~~~~-----~n~-rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~ 797 (885)
|.. ..-++. -|... -.+ ..+. .+. +..-.....++.+.+.+++.+.+.+|-||.-.+.=.....
T Consensus 135 ~~~-------~~~~~~-~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~ 206 (241)
T PRK05340 135 PWL-------QWLFLA-LPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQA 206 (241)
T ss_pred HHH-------HHHHHh-CCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceeeccC
Confidence 210 000000 01000 000 0000 001 1111233567888899999999999999986643333222
Q ss_pred CCeEEEEeccccccCCCCCeEEEEEEcCc
Q 002749 798 QGQLITLFSATNYCGTANNAGAILVVGRG 826 (885)
Q Consensus 798 ~~~~itvfSa~~y~~~~~n~ga~l~~~~~ 826 (885)
++.-++-.+-.+. ...+.++.++.+
T Consensus 207 ~~~~~~~~~lgdw----~~~~~~~~~~~~ 231 (241)
T PRK05340 207 GGQPATRIVLGDW----HEQGSVLKVDAD 231 (241)
T ss_pred CCcceEEEEeCCC----CCCCeEEEEECC
Confidence 3211122222222 223677777665
No 96
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.53 E-value=0.006 Score=63.73 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=39.7
Q ss_pred eCHHHHHHHHHHc-CCeEEEEeccccccceEEe-----cCCeEEEEeccccccCCCCCe-EEEEEEcCc-ceEEeEEecC
Q 002749 765 FGPDRVSDFCKRN-KLQLIIRAHECVMDGFERF-----AQGQLITLFSATNYCGTANNA-GAILVVGRG-LVVVPKLIHP 836 (885)
Q Consensus 765 fg~~~~~~fl~~~-~l~~iiR~H~~~~~G~~~~-----~~~~~itvfSa~~y~~~~~n~-ga~l~~~~~-~~~~~~~~~~ 836 (885)
.+...+.+.++++ ++++++-||.-. .+.... .++.+..+++....-...+|. =.++.++.+ .+|..+.+.|
T Consensus 135 ~~~~~~~~ll~~~~~V~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~i~~~tysp 213 (214)
T cd07399 135 DGQQIWDKLVKKNDNVFMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDNNKIDVRTYSP 213 (214)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCC-CceEEEcccCCCCCEeeEEeecccCCCCCCcceEEEEEEecCCCEEEEEeCCC
Confidence 4566788899998 899999999643 233322 133455554432111111221 145556665 4666666655
No 97
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.50 E-value=0.0016 Score=63.15 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceE
Q 002749 766 GPDRVSDFCKRNKLQLIIRAHECVMDGFE 794 (885)
Q Consensus 766 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 794 (885)
+.+.+.+++++.++++++-||.-....+.
T Consensus 101 ~~~~~~~~l~~~~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 101 DAGDALKLLAEAGVDLVLHGHKHVPYVGN 129 (144)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCcCeee
Confidence 55788999999999999999987755444
No 98
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.50 E-value=2.1e-05 Score=87.95 Aligned_cols=243 Identities=11% Similarity=0.003 Sum_probs=159.3
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceeeecC----CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCC
Q 002749 553 FLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ 628 (885)
Q Consensus 553 ~~~~~~~~~l~~~~~~~~~~e~~~l~~~~----~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~ 628 (885)
.|...++..+++.+.+++..+|+...+.+ -.+.++|.||.+.|+.+.++.- |.-. .-|++-|++++++.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~-----K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYI-----KAYVRRGTAVMALG 86 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhh-----heeeeccHHHHhHH
Confidence 46778889999999999999998887643 4889999999999999988764 2211 15999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhccCCceEEEEcCeEEEecC
Q 002749 629 HSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHG 708 (885)
Q Consensus 629 ~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHg 708 (885)
...+.+..|...+..-|+...+.|++||+..+-..++|..+....+++. +..+...+...+.. |++..+.+.++=-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~-~s~~~~~~~~~~~~-~i~~~y~g~~le~~- 163 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDK-KSVVEMKIDEEDMD-LIESDYSGPVLEDH- 163 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCC-cccccccccccccc-ccccccCCcccccc-
Confidence 9999999999999999999999999999999999999988777666543 22233322222211 14444443222222
Q ss_pred CCC--------------CCC-----cC-HHHh----hcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceeE
Q 002749 709 GIG--------------RSI-----HS-VEQI----EKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVT 764 (885)
Q Consensus 709 Gi~--------------~~~-----~~-~~~i----~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~ 764 (885)
-+. ..+ .+ +++. +.+..++++. .-.|..|+++... -..|-+..|+.+ ..
T Consensus 164 kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~----~~~d~~~sv~gd~--hGqfydl~nif~-l~ 236 (476)
T KOG0376|consen 164 KVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEIS----VPGDVKISVCGDT--HGQFYDLLNIFE-LN 236 (476)
T ss_pred hhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEee----cCCCceEEecCCc--cccccchhhhHh-hc
Confidence 100 000 00 1111 1111222221 4457788888642 222334455555 34
Q ss_pred eCHHHHHHHHHHcCCeEEEEeccccc-----------c-ceEEec---CCeEEEEeccccccC
Q 002749 765 FGPDRVSDFCKRNKLQLIIRAHECVM-----------D-GFERFA---QGQLITLFSATNYCG 812 (885)
Q Consensus 765 fg~~~~~~fl~~~~l~~iiR~H~~~~-----------~-G~~~~~---~~~~itvfSa~~y~~ 812 (885)
.+++....||.+.++.-+++.|.-+. + +|.... .+.+++||+++.+|-
T Consensus 237 g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~ 299 (476)
T KOG0376|consen 237 GLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK 299 (476)
T ss_pred CCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence 56777778888888888888876441 1 121111 235899999998874
No 99
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.49 E-value=9.7e-05 Score=73.80 Aligned_cols=67 Identities=27% Similarity=0.207 Sum_probs=45.8
Q ss_pred eEEEecCCCCHHHHHHHHH-HhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCccc
Q 002749 583 VKVFGDLHGQFGDLMRLFD-EYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 583 i~vvGDiHG~~~~L~~il~-~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
+.+++|||+....+...+. .......+ -++++||+++++.....+. ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d------~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDAD------ILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCC------EEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 4689999999887766553 12222222 6888999999987765544 2222 23446799999999985
No 100
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.40 E-value=0.00034 Score=75.79 Aligned_cols=70 Identities=19% Similarity=0.050 Sum_probs=49.9
Q ss_pred CCeEEEecCCCC----HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC--CChHHHHHHHHHHHhcCCCCEEEeccC
Q 002749 581 APVKVFGDLHGQ----FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG--QHSLETITLLLALKIEYPENVHLIRGN 654 (885)
Q Consensus 581 ~~i~vvGDiHG~----~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG--~~s~evl~ll~~lk~~~p~~v~llrGN 654 (885)
-+|.+++|||.. ...+.++++.......+ -++++|||+|++ ....++..+|..|+... .++.+.||
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pD------lVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GN 121 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQKPD------LILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGN 121 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCC------EEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCC
Confidence 359999999976 45577777765433333 688999999954 33345666777776544 49999999
Q ss_pred Cccc
Q 002749 655 HEAA 658 (885)
Q Consensus 655 HE~~ 658 (885)
||..
T Consensus 122 HD~~ 125 (271)
T PRK11340 122 HDRP 125 (271)
T ss_pred CCcc
Confidence 9974
No 101
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.28 E-value=0.038 Score=58.27 Aligned_cols=203 Identities=8% Similarity=0.056 Sum_probs=105.1
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCcc-EEEEECC-----EEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCC
Q 002749 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAH-AAAAVGT-----MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQ 148 (885)
Q Consensus 75 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~h-sa~~~~~-----~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~ 148 (885)
..++++||.|++|..++....++.....+ .....+. +|+.+.... .......+.+|++.++ +|+.+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~~~~--~Wr~~~~~-- 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTLGSN--SWRTIECS-- 88 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEeCCC--CccccccC--
Confidence 45899999999999997432110101111 1222221 666665431 1123457889999985 49998521
Q ss_pred CCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEE-cCCCCCCCCCcc---cceEEEecCCEEEEEcc
Q 002749 149 GPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQR-LNPEGDRPSARM---YATASARSDGMFLLCGG 224 (885)
Q Consensus 149 ~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~-i~~~g~~P~~r~---~hsa~~~~~g~l~i~GG 224 (885)
++........+.+++ .+|-+...........+..||+.++ +|.. +.. |..+. .+......+|.|.+...
T Consensus 89 ~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~IvsFDl~~E--~f~~~i~~----P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 89 PPHHPLKSRGVCING-VLYYLAYTLKTNPDYFIVSFDVSSE--RFKEFIPL----PCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred CCCccccCCeEEECC-EEEEEEEECCCCCcEEEEEEEcccc--eEeeeeec----CccccccccceEEEEECCEEEEEEe
Confidence 121111222445555 5554443322111126899999999 8884 432 22211 12333444577777654
Q ss_pred CCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccce----eEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCC
Q 002749 225 RDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQ----HAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG 298 (885)
Q Consensus 225 ~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~----hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~ 298 (885)
.... ..-++|.++......|+..-.-.+++.+... ...+..+++|++.-.. .. ..-+..||+.++
T Consensus 162 ~~~~--~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~------~~~~~~y~~~~~ 230 (230)
T TIGR01640 162 KKDT--NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-EN------PFYIFYYNVGEN 230 (230)
T ss_pred cCCC--CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CC------ceEEEEEeccCC
Confidence 3221 1268999876545566543322322233222 2233346787776542 10 113889998764
No 102
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.27 E-value=0.00042 Score=72.61 Aligned_cols=70 Identities=29% Similarity=0.289 Sum_probs=49.7
Q ss_pred CeEEEecCCCCHH----HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH-HHHHHHHHHHhcCCCCEEEeccCCc
Q 002749 582 PVKVFGDLHGQFG----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-ETITLLLALKIEYPENVHLIRGNHE 656 (885)
Q Consensus 582 ~i~vvGDiHG~~~----~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~-evl~ll~~lk~~~p~~v~llrGNHE 656 (885)
++.+++|+|.... .+.++++.+.....+ -+++.||++|.+.... ++..++..++ .+..++++.||||
T Consensus 3 ~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d------~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNHD 74 (223)
T cd07385 3 RIAHLSDLHLGPFVSRERLERLVEKINALKPD------LVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNHD 74 (223)
T ss_pred EEEEEeecCCCccCCHHHHHHHHHHHhccCCC------EEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCcc
Confidence 5899999998743 566776665432223 6888999999987765 4555554443 3356999999999
Q ss_pred ccc
Q 002749 657 AAD 659 (885)
Q Consensus 657 ~~~ 659 (885)
...
T Consensus 75 ~~~ 77 (223)
T cd07385 75 YYS 77 (223)
T ss_pred ccc
Confidence 853
No 103
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.23 E-value=0.012 Score=58.92 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=44.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccc
Q 002749 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
..|.|++|.||...+..+..+.......+ -+|.+||++...... +|......+++.++||.|...
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d------~vih~GD~~~~~~~~--------~l~~~~~~~i~~V~GN~D~~~ 66 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVD------AVIHAGDSTSPFTLD--------ALEGGLAAKLIAVRGNCDGEV 66 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCC------EEEECCCcCCccchH--------HhhcccccceEEEEccCCCcc
Confidence 35899999999997655555555444444 688899999754321 111102368999999999854
No 104
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.19 E-value=0.13 Score=58.79 Aligned_cols=219 Identities=19% Similarity=0.245 Sum_probs=120.2
Q ss_pred CcEEEEECCCCc--EEEecCCCCC-----CcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecC
Q 002749 75 NSVHLYDVLTRK--WTRIRPAGEP-----PSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQG 147 (885)
Q Consensus 75 ~dv~~yd~~t~~--W~~l~~~g~~-----P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~ 147 (885)
..+++||..+++ |+.-...... +.++..-+.++.+++||+.+. ...++.+|..+.+..|+.-..
T Consensus 79 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~-- 149 (394)
T PRK11138 79 GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------KGQVYALNAEDGEVAWQTKVA-- 149 (394)
T ss_pred CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-------CCEEEEEECCCCCCcccccCC--
Confidence 468999988754 8753322100 011333345667889988543 235999999988788976521
Q ss_pred CCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCC
Q 002749 148 QGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA 227 (885)
Q Consensus 148 ~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~ 227 (885)
... .+..++.++.+|+..+. +.++.||.++....|+.-..... ...+...+.+ +.++.+|+..+
T Consensus 150 ---~~~--~ssP~v~~~~v~v~~~~------g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~sP~-v~~~~v~~~~~--- 213 (394)
T PRK11138 150 ---GEA--LSRPVVSDGLVLVHTSN------GMLQALNESDGAVKWTVNLDVPS-LTLRGESAPA-TAFGGAIVGGD--- 213 (394)
T ss_pred ---Cce--ecCCEEECCEEEEECCC------CEEEEEEccCCCEeeeecCCCCc-ccccCCCCCE-EECCEEEEEcC---
Confidence 111 12223334577764332 35899999999888987543200 0111112222 34556666433
Q ss_pred CCCcccceEEEEcCCCCeeEEEeCCCCCCC----cc---ceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCc-
Q 002749 228 SGAPLADAYGLLMHRNGQWEWTLAPGVAPS----PR---YQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV- 299 (885)
Q Consensus 228 ~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~----~R---~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~- 299 (885)
-..++.++.. +|+-.|......+.. .| ...+-++.++.+|+.+. ...++++|+.+.+
T Consensus 214 ----~g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~----------~g~l~ald~~tG~~ 278 (394)
T PRK11138 214 ----NGRVSAVLME-QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY----------NGNLVALDLRSGQI 278 (394)
T ss_pred ----CCEEEEEEcc-CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc----------CCeEEEEECCCCCE
Confidence 1346666654 445455543222111 01 12333456888888653 2358999998874
Q ss_pred -EEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEeCCEEEEEcCCCCCCCCCceEEeeCCC
Q 002749 300 -WLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSP 362 (885)
Q Consensus 300 -W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~~~~~~~D~~~ld~~~ 362 (885)
|+.-... . ...+..+++||+.... ..++.+|..+
T Consensus 279 ~W~~~~~~--------------------~---~~~~~~~~~vy~~~~~------g~l~ald~~t 313 (394)
T PRK11138 279 VWKREYGS--------------------V---NDFAVDGGRIYLVDQN------DRVYALDTRG 313 (394)
T ss_pred EEeecCCC--------------------c---cCcEEECCEEEEEcCC------CeEEEEECCC
Confidence 8753111 1 1235678899987642 2477777655
No 105
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.18 E-value=0.001 Score=70.35 Aligned_cols=178 Identities=13% Similarity=0.158 Sum_probs=89.2
Q ss_pred eEEEecCCCCH------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-----CC--hHHHHHHHHHHHhcCCCCEE
Q 002749 583 VKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-----QH--SLETITLLLALKIEYPENVH 649 (885)
Q Consensus 583 i~vvGDiHG~~------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG-----~~--s~evl~ll~~lk~~~p~~v~ 649 (885)
+++++|+|... ..|++.+...... .+ .++++||++|.. +. ..++..+|..|+.. +..++
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~~-~d------~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~ 72 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEARK-AD------ALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCY 72 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhcc-CC------EEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEE
Confidence 36899999543 2345555443222 22 688999999952 11 23456666666533 45799
Q ss_pred EeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhccCCceEEE-EcCeEEEecCCCCCCCc-CHHHhhcc-cCC
Q 002749 650 LIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAAL-IEKKIICMHGGIGRSIH-SVEQIEKL-ERP 726 (885)
Q Consensus 650 llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~-i~~~il~vHgGi~~~~~-~~~~i~~~-~rp 726 (885)
.+.||||...-. ...+.. +. .++.. +.... -+.+++++||-.-..-. ...-.+++ ..|
T Consensus 73 ~v~GNHD~~~~~-------~~~~~~----gi-------~~l~~-~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~ 133 (231)
T TIGR01854 73 FMHGNRDFLIGK-------RFAREA----GM-------TLLPD-PSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQP 133 (231)
T ss_pred EEcCCCchhhhH-------HHHHHC----CC-------EEECC-CEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCH
Confidence 999999974210 001111 11 12222 11222 24689999997643211 11111222 112
Q ss_pred ccc------CC-CCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHHHHHHHHcCCeEEEEeccccccceE
Q 002749 727 ITM------DA-GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 794 (885)
Q Consensus 727 ~~~------~~-~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 794 (885)
... +. ....+...+++-.... .. .+..-.....+..++++++..+.+++|-||.-.+.=+.
T Consensus 134 ~~~~~~~~l~~~~r~~l~~~~~~~s~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~ 201 (231)
T TIGR01854 134 WLQRLFLHLPLAVRVKLARKIRAESRAD---KQ----MKSQDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHP 201 (231)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHh---cC----CCcchhhCCCHHHHHHHHHHcCCCEEEECCccCcceee
Confidence 100 00 0001222333322110 00 00001233567889999999999999999986654343
No 106
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.10 E-value=0.19 Score=57.50 Aligned_cols=217 Identities=17% Similarity=0.205 Sum_probs=120.0
Q ss_pred CcEEEEECCCC--cEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCC
Q 002749 75 NSVHLYDVLTR--KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 75 ~dv~~yd~~t~--~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~ 152 (885)
+.++++|..++ .|+.-.. + ....+.++.++.+|+..+ ...++.||..+.+..|..-... +....
T Consensus 130 g~l~ald~~tG~~~W~~~~~-~-----~~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~-~~~~~ 195 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVA-G-----EALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDV-PSLTL 195 (394)
T ss_pred CEEEEEECCCCCCcccccCC-C-----ceecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCC-Ccccc
Confidence 56999999876 4975321 1 112233556888888543 2359999999988889876321 11111
Q ss_pred ccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCC--CCCCCCcc--cceEEEecCCEEEEEccCCCC
Q 002749 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPE--GDRPSARM--YATASARSDGMFLLCGGRDAS 228 (885)
Q Consensus 153 R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~--g~~P~~r~--~hsa~~~~~g~l~i~GG~~~~ 228 (885)
+...+-++.. +.+|+. ..+ +.++.+|.++....|+.-... +.....+. ..+.-++.++.+|+.+. +
T Consensus 196 ~~~~sP~v~~-~~v~~~-~~~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~-- 265 (394)
T PRK11138 196 RGESAPATAF-GGAIVG-GDN-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-N-- 265 (394)
T ss_pred cCCCCCEEEC-CEEEEE-cCC-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-C--
Confidence 2222233333 456653 332 358889999887788753211 00000010 11222345777887542 1
Q ss_pred CCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCC--cEEEccCC
Q 002749 229 GAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLDRNGL 306 (885)
Q Consensus 229 ~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~--~W~~v~~~ 306 (885)
..++.++..+ |+-.|....+.. ...+..+++||+... ...++++|.++. .|+.-...
T Consensus 266 ----g~l~ald~~t-G~~~W~~~~~~~------~~~~~~~~~vy~~~~----------~g~l~ald~~tG~~~W~~~~~~ 324 (394)
T PRK11138 266 ----GNLVALDLRS-GQIVWKREYGSV------NDFAVDGGRIYLVDQ----------NDRVYALDTRGGVELWSQSDLL 324 (394)
T ss_pred ----CeEEEEECCC-CCEEEeecCCCc------cCcEEECCEEEEEcC----------CCeEEEEECCCCcEEEcccccC
Confidence 3577888764 454565543221 134567899998753 245999999886 47642211
Q ss_pred cccCCCCCCCCCCCCCcCcccccceEEEEeCCEEEEEcCCCCCCCCCceEEeeCCC
Q 002749 307 VTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSP 362 (885)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~~~~~~~D~~~ld~~~ 362 (885)
.+...+.++.+++||+... ++ .++.+|..+
T Consensus 325 --------------------~~~~~sp~v~~g~l~v~~~-~G-----~l~~ld~~t 354 (394)
T PRK11138 325 --------------------HRLLTAPVLYNGYLVVGDS-EG-----YLHWINRED 354 (394)
T ss_pred --------------------CCcccCCEEECCEEEEEeC-CC-----EEEEEECCC
Confidence 2333445567888887532 33 366666554
No 107
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.05 E-value=0.0013 Score=69.89 Aligned_cols=68 Identities=25% Similarity=0.190 Sum_probs=46.5
Q ss_pred CeEEEecCCCCH------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCC
Q 002749 582 PVKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 655 (885)
Q Consensus 582 ~i~vvGDiHG~~------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 655 (885)
+|.+++|+|..+ ..|.++++.+.-...+ -+|+.||++++.+...+++..|..+ .+..++++.|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d------~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKID------HLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCC------EEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCC
Confidence 478999999753 1245566555322233 6899999999876666655555443 345699999999
Q ss_pred ccc
Q 002749 656 EAA 658 (885)
Q Consensus 656 E~~ 658 (885)
|..
T Consensus 72 D~~ 74 (239)
T TIGR03729 72 DML 74 (239)
T ss_pred CCC
Confidence 974
No 108
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.00 E-value=0.083 Score=55.64 Aligned_cols=187 Identities=10% Similarity=0.139 Sum_probs=101.5
Q ss_pred CCcccccceEecCCCCCCCccccE--EEEecc-ccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcE
Q 002749 11 PSYRTLETYWDTDEDAPGPRCGHT--LTAVAA-TKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKW 87 (885)
Q Consensus 11 ~~y~~~~~~w~~~~~~P~pR~ghs--~t~i~~-~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W 87 (885)
..+||.|+.|..+++.+.++..+. +..++- .....-|++.+....... ....+.+|+..+++|
T Consensus 17 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~--------------~~~~~~Vys~~~~~W 82 (230)
T TIGR01640 17 VVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR--------------NQSEHQVYTLGSNSW 82 (230)
T ss_pred EEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC--------------CCccEEEEEeCCCCc
Confidence 456899999999876554322111 111111 112233666554432111 235688999999999
Q ss_pred EEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEE-EeecCCCCCCc----cccEEEEEC
Q 002749 88 TRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHR-VVVQGQGPGPR----YGHVMDLVS 162 (885)
Q Consensus 88 ~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~-v~~~~~~p~~R----~~ht~~~~~ 162 (885)
+.+.... +.-......+.+++.+|.+...... .....+..||+.+++ |.. + ++|..+ ....++.++
T Consensus 83 r~~~~~~--~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~--f~~~i----~~P~~~~~~~~~~~L~~~~ 153 (230)
T TIGR01640 83 RTIECSP--PHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSER--FKEFI----PLPCGNSDSVDYLSLINYK 153 (230)
T ss_pred cccccCC--CCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccce--Eeeee----ecCccccccccceEEEEEC
Confidence 9987332 2111222377889988888753221 111268999999965 774 5 223322 233455666
Q ss_pred CcEEEEEecCCCCcccCcEEEEe-cCCCCeeEEEcCCCCCCCCCcc---cceEEEecCCEEEEEcc
Q 002749 163 QRYLVSVSGNDGKRVLSDAWALD-TAQKPYVWQRLNPEGDRPSARM---YATASARSDGMFLLCGG 224 (885)
Q Consensus 163 ~~~lyv~GG~~~~~~~ndv~~~d-~~t~~~~W~~i~~~g~~P~~r~---~hsa~~~~~g~l~i~GG 224 (885)
+.|.++....... .-++|+++ -... .|++.-.....+.+.. ........++.+++..+
T Consensus 154 -G~L~~v~~~~~~~-~~~IWvl~d~~~~--~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 154 -GKLAVLKQKKDTN-NFDLWVLNDAGKQ--EWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred -CEEEEEEecCCCC-cEEEEEECCCCCC--ceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 4676665543211 14789886 3344 6988644321112222 12344567777777654
No 109
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.97 E-value=0.0028 Score=63.50 Aligned_cols=39 Identities=36% Similarity=0.561 Sum_probs=29.5
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccc
Q 002749 616 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 616 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
.+|++||++++|..... +.+|.++ +..+++++||||...
T Consensus 45 ~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~ 83 (168)
T cd07390 45 TVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSL 83 (168)
T ss_pred EEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchh
Confidence 79999999999986644 4444333 356999999999754
No 110
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.83 E-value=0.0031 Score=68.22 Aligned_cols=73 Identities=22% Similarity=0.316 Sum_probs=47.9
Q ss_pred CeEEEecCC-C------------CHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-hHHHHHHHHHHHhcCCCC
Q 002749 582 PVKVFGDLH-G------------QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-SLETITLLLALKIEYPEN 647 (885)
Q Consensus 582 ~i~vvGDiH-G------------~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-s~evl~ll~~lk~~~p~~ 647 (885)
++.+++|+| + ....|.++++.+.....+ -+|++||+++.|.. +.+-+..++++-...+-.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d------~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p 75 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLD------FVVQLGDIIDGDNARAEEALDAVLAILDRLKGP 75 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCC------EEEECCCeecCCCchHHHHHHHHHHHHHhcCCC
Confidence 588999999 2 245666777666432222 68999999998873 223344333333333457
Q ss_pred EEEeccCCcccch
Q 002749 648 VHLIRGNHEAADI 660 (885)
Q Consensus 648 v~llrGNHE~~~~ 660 (885)
++.+.||||....
T Consensus 76 ~~~v~GNHD~~~~ 88 (267)
T cd07396 76 VHHVLGNHDLYNP 88 (267)
T ss_pred EEEecCccccccc
Confidence 9999999998643
No 111
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=96.79 E-value=0.0026 Score=66.44 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=46.4
Q ss_pred CeEEEecCC-CCH--------------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcC--
Q 002749 582 PVKVFGDLH-GQF--------------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEY-- 644 (885)
Q Consensus 582 ~i~vvGDiH-G~~--------------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~-- 644 (885)
+++.++|+| |.. ..|.++++.+.....+ .+|+.||++|....+.+.+..+...-.+.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 74 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVD------FVLIAGDLFDSNNPSPEALELLIEALRRLKE 74 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCC------EEEECCcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999 322 2355555554432223 68999999998876555444333322122
Q ss_pred -CCCEEEeccCCcccch
Q 002749 645 -PENVHLIRGNHEAADI 660 (885)
Q Consensus 645 -p~~v~llrGNHE~~~~ 660 (885)
.-.++++.||||....
T Consensus 75 ~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 75 AGIPVFIIAGNHDSPSR 91 (223)
T ss_pred CCCCEEEecCCCCCccc
Confidence 3569999999997654
No 112
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.78 E-value=0.0026 Score=68.24 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=45.2
Q ss_pred eEEEecCCCCHHHHHHHHHHhC---CCCCCCCcceeeEEEeccccCCC-CChHHHHH------HHHHH------HhcCCC
Q 002749 583 VKVFGDLHGQFGDLMRLFDEYG---FPSTAGDITYIDYLFLGDYVDRG-QHSLETIT------LLLAL------KIEYPE 646 (885)
Q Consensus 583 i~vvGDiHG~~~~L~~il~~~g---~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~------ll~~l------k~~~p~ 646 (885)
|+|+||+||+++.+.+.++... ..+.+ -+|++||+-..+ ...++.+. -+..+ ..+.|-
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D------~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~ 74 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVD------LLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPI 74 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCc------EEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCe
Confidence 6899999999998877554432 22233 688899997543 34444432 11111 233566
Q ss_pred CEEEeccCCcccc
Q 002749 647 NVHLIRGNHEAAD 659 (885)
Q Consensus 647 ~v~llrGNHE~~~ 659 (885)
-+++|-||||...
T Consensus 75 ~t~fi~GNHE~~~ 87 (262)
T cd00844 75 LTIFIGGNHEASN 87 (262)
T ss_pred eEEEECCCCCCHH
Confidence 6899999999743
No 113
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=96.78 E-value=0.073 Score=57.31 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCeEE-EEEEcCcc
Q 002749 767 PDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGA-ILVVGRGL 827 (885)
Q Consensus 767 ~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga-~l~~~~~~ 827 (885)
...+.+.|++.++++++-||.-....... +|--.-+-.++.++-..++.|. ++.|+++.
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 254 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGRY--GGLEMVVTSAIGAQLGNDKSGLRIVKVTEDK 254 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceEE--CCEEEEEcCceecccCCCCCCcEEEEECCCc
Confidence 45677888999999999999887665432 3321122233343333334443 55665443
No 114
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.69 E-value=0.0063 Score=71.65 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=61.0
Q ss_pred cCCeEEEecCC-CCH----HHHHHHHHHhC-CCCCCC--CcceeeEEEeccccCC-CCCh---------------HHHHH
Q 002749 580 RAPVKVFGDLH-GQF----GDLMRLFDEYG-FPSTAG--DITYIDYLFLGDYVDR-GQHS---------------LETIT 635 (885)
Q Consensus 580 ~~~i~vvGDiH-G~~----~~L~~il~~~g-~~~~~~--~~~~~~~vfLGDyVDR-G~~s---------------~evl~ 635 (885)
...+++++||| |.- ..+.++++.+. ..+... ...-..+|++||+||. |.+. -++..
T Consensus 243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~ 322 (504)
T PRK04036 243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE 322 (504)
T ss_pred ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence 35699999999 652 22444444332 211100 0001278999999994 3221 13444
Q ss_pred HHHHHHhcCCCCEEEeccCCcccchhhhc-CChHHHHHHhCCCCchhhhhhhhhhccCCceEEEEcC-eEEEecCCC
Q 002749 636 LLLALKIEYPENVHLIRGNHEAADINALF-GFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGI 710 (885)
Q Consensus 636 ll~~lk~~~p~~v~llrGNHE~~~~~~~~-gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~-~il~vHgGi 710 (885)
+|..+. ..-.|++++||||........ .+..+....+.. .-..++.. |....+++ +++++||-.
T Consensus 323 ~L~~L~--~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~--------~~v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 323 YLKQIP--EDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPE--------HNVTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHHhhh--cCCeEEEecCCCcchhhccCCCCccHHHHHhcCc--------CCeEEecC-CeEEEECCEEEEEECCCC
Confidence 454443 224699999999976533221 122222111211 01223333 55444444 789999864
No 115
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.00024 Score=77.23 Aligned_cols=209 Identities=7% Similarity=-0.140 Sum_probs=141.0
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhccCCc
Q 002749 615 IDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLP 694 (885)
Q Consensus 615 ~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP 694 (885)
...|+++++++++.+.++.+-+.+..+..|-.+...++++|+. .++++++++......+...+|+..++.+..++
T Consensus 49 latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~-----~~~~R~~LVlp~l~S~riyvid~~~ep~~~~l 123 (476)
T KOG0918|consen 49 LATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGD-----SSFKRRYLVLPSLNSGRIYVIDVKTEPRKPSL 123 (476)
T ss_pred eeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccC-----cchhhhheeecccccCceEEEEeccCcCccce
Confidence 4789999999999999999999999999998899999999943 55667777666666667788999999999999
Q ss_pred eEEEEcCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCC--CCCcccCCCCCceeEeCHH--HH
Q 002749 695 LAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDS--IEGLRPNARGPGLVTFGPD--RV 770 (885)
Q Consensus 695 ~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~--~~~~~~n~rg~~~~~fg~~--~~ 770 (885)
...+.. +++|.||+..|+......+.++. +..-.+.....+. |-++.+.+. ..-|. .++.. ..||-| ..
T Consensus 124 ~k~i~~-~il~~~~l~~Pht~hcla~g~v~--vs~lGd~~gn~kg-~f~llD~~~~~k~tw~--~~~~~-p~~gyDfwyq 196 (476)
T KOG0918|consen 124 EKTIDP-DILEKTGLACPHTSHCLASGNVM--VSCLGDAEGNAKG-GFLLLDSDFNEKGTWE--KPGHS-PLFGYDFWYQ 196 (476)
T ss_pred eeeech-hhHhhcCCcCCcccccccCCCee--EEeecccccCCcC-CeEEecCccceecccc--cCCCc-cccccceeec
Confidence 998877 89999999999977665554321 1110000011111 333332210 11111 11111 222322 23
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeccccccCCCCCeEEEEEEcCc--ceEEeEEecCC
Q 002749 771 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRG--LVVVPKLIHPL 837 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~--~~~~~~~~~~~ 837 (885)
-.++.....+...+.|.-...++..+.++ ++.++..-|.-...|.++.+.++.+ +.++.+.+|..
T Consensus 197 pr~~~mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~p 263 (476)
T KOG0918|consen 197 PRHNVMISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHNP 263 (476)
T ss_pred cccceEEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCccceeEEecCCCCcceEEeeeccCC
Confidence 34555666777788887655555566676 8899999998888999999999875 33455555543
No 116
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=96.60 E-value=0.0041 Score=62.54 Aligned_cols=44 Identities=25% Similarity=0.244 Sum_probs=27.7
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHHHhcCCCCEEEeccCCcccc
Q 002749 616 DYLFLGDYVDRGQHS--LETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 616 ~~vfLGDyVDRG~~s--~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
.+|++||++|..... .+...+-+.......-.+++++||||...
T Consensus 44 ~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 44 RLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGGL 89 (172)
T ss_pred EEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccch
Confidence 799999999865432 22222211122234457999999999853
No 117
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.50 E-value=0.0057 Score=63.72 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=21.5
Q ss_pred eCHHHHHHHHHHcCCeEEEEecccccc
Q 002749 765 FGPDRVSDFCKRNKLQLIIRAHECVMD 791 (885)
Q Consensus 765 fg~~~~~~fl~~~~l~~iiR~H~~~~~ 791 (885)
..+..+.+.++..+.+++|-||.-...
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~ 202 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRPA 202 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 355667788889999999999986643
No 118
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.48 E-value=0.0055 Score=68.70 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=45.6
Q ss_pred CeEEEecCC-C-----------CHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-CChHHHHHHHHH----HHhcC
Q 002749 582 PVKVFGDLH-G-----------QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLA----LKIEY 644 (885)
Q Consensus 582 ~i~vvGDiH-G-----------~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~ll~~----lk~~~ 644 (885)
+++.++|+| | +...|.++++.+.-...+ .+|+.||++|+. +.+.+++.++.. +-...
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD------~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~ 75 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGIT------TWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEA 75 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCC------EEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 588999999 4 223455555544322223 689999999985 455555444433 21223
Q ss_pred CCCEEEeccCCcccc
Q 002749 645 PENVHLIRGNHEAAD 659 (885)
Q Consensus 645 p~~v~llrGNHE~~~ 659 (885)
+-.+++|.||||...
T Consensus 76 gi~v~~I~GNHD~~~ 90 (340)
T PHA02546 76 GITLHVLVGNHDMYY 90 (340)
T ss_pred CCeEEEEccCCCccc
Confidence 457999999999743
No 119
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.47 E-value=0.0084 Score=63.50 Aligned_cols=69 Identities=26% Similarity=0.305 Sum_probs=44.4
Q ss_pred CeEEEecCCCC------------HHHHHHHHHHhCCC--CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCC
Q 002749 582 PVKVFGDLHGQ------------FGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPEN 647 (885)
Q Consensus 582 ~i~vvGDiHG~------------~~~L~~il~~~g~~--~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~ 647 (885)
++.+++|||=. ...|.++++.+... ..+ -+|++||+++.|.. +....+.++..+.+..
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d------~vi~~GDl~~~~~~--~~~~~~~~~l~~~~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPD------LVLVTGDLTDDGSP--ESYERLRELLAALPIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCC------EEEECccCCCCCCH--HHHHHHHHHHhhcCCC
Confidence 47899999944 34567777765432 222 68999999998753 2222222222223456
Q ss_pred EEEeccCCccc
Q 002749 648 VHLIRGNHEAA 658 (885)
Q Consensus 648 v~llrGNHE~~ 658 (885)
++.++||||..
T Consensus 73 ~~~v~GNHD~~ 83 (240)
T cd07402 73 VYLLPGNHDDR 83 (240)
T ss_pred EEEeCCCCCCH
Confidence 99999999974
No 120
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.47 E-value=1.4 Score=45.99 Aligned_cols=216 Identities=19% Similarity=0.281 Sum_probs=121.5
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCcccCccE--EEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCC
Q 002749 75 NSVHLYDVLTRK--WTRIRPAGEPPSPRAAHA--AAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP 150 (885)
Q Consensus 75 ~dv~~yd~~t~~--W~~l~~~g~~P~~R~~hs--a~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p 150 (885)
+.+.++|+.+++ |+.-. + .+..+.. .+..++.+|+.. ....++++|..+.+..|+.-. +
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~---~~~~~~~~~~~~~~~~v~~~~-------~~~~l~~~d~~tG~~~W~~~~-----~ 65 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--G---PGIGGPVATAVPDGGRVYVAS-------GDGNLYALDAKTGKVLWRFDL-----P 65 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--S---SSCSSEEETEEEETTEEEEEE-------TTSEEEEEETTTSEEEEEEEC-----S
T ss_pred CEEEEEECCCCCEEEEEEC--C---CCCCCccceEEEeCCEEEEEc-------CCCEEEEEECCCCCEEEEeec-----c
Confidence 568899997764 88632 1 1122222 334788998873 345699999988888898882 2
Q ss_pred CCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEE-EcCCCCCCCCCcccceEEEecCCEEEEEccCCCCC
Q 002749 151 GPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQ-RLNPEGDRPSARMYATASARSDGMFLLCGGRDASG 229 (885)
Q Consensus 151 ~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~-~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~ 229 (885)
.+-... ....+ +.+|+.... +.++++|..+....|+ ...... +..........+.++.+|+...
T Consensus 66 ~~~~~~-~~~~~-~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----- 130 (238)
T PF13360_consen 66 GPISGA-PVVDG-GRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSP--PAGVRSSSSPAVDGDRLYVGTS----- 130 (238)
T ss_dssp SCGGSG-EEEET-TEEEEEETT------SEEEEEETTTSCEEEEEEE-SSC--TCSTB--SEEEEETTEEEEEET-----
T ss_pred ccccce-eeecc-cccccccce------eeeEecccCCcceeeeecccccc--ccccccccCceEecCEEEEEec-----
Confidence 221222 33444 477766521 2699999999988999 454321 1222222333344666666543
Q ss_pred CcccceEEEEcCCCCeeEEEeCCCCCCCc-------cceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCc--E
Q 002749 230 APLADAYGLLMHRNGQWEWTLAPGVAPSP-------RYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--W 300 (885)
Q Consensus 230 ~~l~dv~~~d~~~~~~W~w~~~~~~~P~~-------R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~--W 300 (885)
-..++.++..+ |+-.|......++.. ......+..++.+|+..+. ..+..+|.++.+ |
T Consensus 131 --~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------g~~~~~d~~tg~~~w 197 (238)
T PF13360_consen 131 --SGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD----------GRVVAVDLATGEKLW 197 (238)
T ss_dssp --CSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT----------SSEEEEETTTTEEEE
T ss_pred --cCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC----------CeEEEEECCCCCEEE
Confidence 34578888664 455565544332211 1123333346788888662 125666999997 8
Q ss_pred EEccCCcccCCCCCCCCCCCCCcCcccccceEEEEeCCEEEEEcCCCCCCCCCceEEeeCCCC
Q 002749 301 LDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPF 363 (885)
Q Consensus 301 ~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~~~~~~~D~~~ld~~~~ 363 (885)
+.. . .-........++.||+.. .+ ..++.+|..+-
T Consensus 198 ~~~--~--------------------~~~~~~~~~~~~~l~~~~-~~-----~~l~~~d~~tG 232 (238)
T PF13360_consen 198 SKP--I--------------------SGIYSLPSVDGGTLYVTS-SD-----GRLYALDLKTG 232 (238)
T ss_dssp EEC--S--------------------S-ECECEECCCTEEEEEE-TT-----TEEEEEETTTT
T ss_pred Eec--C--------------------CCccCCceeeCCEEEEEe-CC-----CEEEEEECCCC
Confidence 433 2 111222344566777776 32 45677776653
No 121
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.47 E-value=1.4 Score=45.97 Aligned_cols=183 Identities=19% Similarity=0.202 Sum_probs=103.8
Q ss_pred cCcEEEEECCCCc--EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCC
Q 002749 74 TNSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (885)
Q Consensus 74 ~~dv~~yd~~t~~--W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~ 151 (885)
...++++|..+++ |+.-... +.....+..++.+|+..+. +.++.+|..+.+..|+......+...
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~~------~~~~~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLPG------PISGAPVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECSS------CGGSGEEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred CCEEEEEECCCCCEEEEeeccc------cccceeeecccccccccce-------eeeEecccCCcceeeeeccccccccc
Confidence 4789999998765 7765411 2222257778899887631 26999999888888994322111111
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCc----ccceEEEecCCEEEEEccCCC
Q 002749 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSAR----MYATASARSDGMFLLCGGRDA 227 (885)
Q Consensus 152 ~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r----~~hsa~~~~~g~l~i~GG~~~ 227 (885)
.+......+.+ +.+|+... -..++++|+++....|..-........+- ...+..++.++.+|+..+..
T Consensus 112 ~~~~~~~~~~~-~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g- 183 (238)
T PF13360_consen 112 VRSSSSPAVDG-DRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG- 183 (238)
T ss_dssp TB--SEEEEET-TEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-
T ss_pred cccccCceEec-CEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-
Confidence 23334443444 46665443 24689999999877898765331110100 01133344566888876532
Q ss_pred CCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCc
Q 002749 228 SGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (885)
Q Consensus 228 ~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (885)
.+..++..+. +-.|...... ........++.||+.. . ...++++|.++++
T Consensus 184 ------~~~~~d~~tg-~~~w~~~~~~-----~~~~~~~~~~~l~~~~-~---------~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 184 ------RVVAVDLATG-EKLWSKPISG-----IYSLPSVDGGTLYVTS-S---------DGRLYALDLKTGK 233 (238)
T ss_dssp ------SEEEEETTTT-EEEEEECSS------ECECEECCCTEEEEEE-T---------TTEEEEEETTTTE
T ss_pred ------eEEEEECCCC-CEEEEecCCC-----ccCCceeeCCEEEEEe-C---------CCEEEEEECCCCC
Confidence 2566755544 5446333111 1112334577787775 2 2469999999984
No 122
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.42 E-value=1.3 Score=50.17 Aligned_cols=184 Identities=18% Similarity=0.228 Sum_probs=99.6
Q ss_pred cCcEEEEECCCCc--EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCC
Q 002749 74 TNSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (885)
Q Consensus 74 ~~dv~~yd~~t~~--W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~ 151 (885)
.+.++.+|..+++ |+.-.. + ....+.+..++.+|+..+ ...++.+|..+.+..|+.-... ....
T Consensus 114 ~g~l~ald~~tG~~~W~~~~~-~-----~~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~-~~~~ 179 (377)
T TIGR03300 114 KGEVIALDAEDGKELWRAKLS-S-----EVLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVT-PALT 179 (377)
T ss_pred CCEEEEEECCCCcEeeeeccC-c-----eeecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCC-Ccee
Confidence 3568889987654 875321 1 112333445778777543 2349999998877788865211 1111
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCC--CCCCCCcc--cceEEEecCCEEEEEccCCC
Q 002749 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPE--GDRPSARM--YATASARSDGMFLLCGGRDA 227 (885)
Q Consensus 152 ~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~--g~~P~~r~--~hsa~~~~~g~l~i~GG~~~ 227 (885)
.+...+.++.+ +.+| +|..++ .++.+|+.+....|+.-... +.....+. ..+...+.++.+|+...
T Consensus 180 ~~~~~sp~~~~-~~v~-~~~~~g-----~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~--- 249 (377)
T TIGR03300 180 LRGSASPVIAD-GGVL-VGFAGG-----KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY--- 249 (377)
T ss_pred ecCCCCCEEEC-CEEE-EECCCC-----EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc---
Confidence 12223333444 3554 454332 58999998887788753211 00000010 11122335677777442
Q ss_pred CCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCC--cEEE
Q 002749 228 SGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLD 302 (885)
Q Consensus 228 ~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~--~W~~ 302 (885)
...++.++.. +|.-.|...... ..+.+..++++|+... ...++++|..+. .|+.
T Consensus 250 ----~g~l~a~d~~-tG~~~W~~~~~~------~~~p~~~~~~vyv~~~----------~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 250 ----QGRVAALDLR-SGRVLWKRDASS------YQGPAVDDNRLYVTDA----------DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ----CCEEEEEECC-CCcEEEeeccCC------ccCceEeCCEEEEECC----------CCeEEEEECCCCcEEEcc
Confidence 1347778875 345456543211 1233456888888743 245899998876 4764
No 123
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=96.24 E-value=0.14 Score=55.69 Aligned_cols=73 Identities=26% Similarity=0.325 Sum_probs=50.5
Q ss_pred CeEEEecCCCC------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHH--HhcCCCCEEEecc
Q 002749 582 PVKVFGDLHGQ------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLAL--KIEYPENVHLIRG 653 (885)
Q Consensus 582 ~i~vvGDiHG~------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~l--k~~~p~~v~llrG 653 (885)
+++.|+|+|-- ...+..+++.+.....+ -+|+.||++++|. ..| ...+..+ +...|..+++++|
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D------~~v~tGDl~~~~~-~~~-~~~~~~~l~~~~~~~~~~~vpG 73 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKPD------LLVVTGDLTNDGE-PEE-YRRLKELLARLELPAPVIVVPG 73 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCCC------EEEEccCcCCCCC-HHH-HHHHHHHHhhccCCCceEeeCC
Confidence 57889999977 34566666777744444 7999999999962 222 2222222 2367788999999
Q ss_pred CCcccchhh
Q 002749 654 NHEAADINA 662 (885)
Q Consensus 654 NHE~~~~~~ 662 (885)
|||....+.
T Consensus 74 NHD~~~~~~ 82 (301)
T COG1409 74 NHDARVVNG 82 (301)
T ss_pred CCcCCchHH
Confidence 999977543
No 124
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.20 E-value=0.015 Score=61.17 Aligned_cols=72 Identities=21% Similarity=0.183 Sum_probs=41.3
Q ss_pred CCeEEEecCC-CCHHH----------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhc
Q 002749 581 APVKVFGDLH-GQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIE 643 (885)
Q Consensus 581 ~~i~vvGDiH-G~~~~----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~ 643 (885)
+.+.||+|+| |--.. |.++.+.......+ .+|++||+++..... .....+.++...
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d------~vIi~GDl~h~~~~~-~~~~~~~~~l~~ 87 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIE------ALIINGDLKHEFKKG-LEWRFIREFIEV 87 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCC------EEEEcCccccccCCh-HHHHHHHHHHHh
Confidence 6689999999 53222 22233322222222 799999999765543 222222222111
Q ss_pred CCCCEEEeccCCcccc
Q 002749 644 YPENVHLIRGNHEAAD 659 (885)
Q Consensus 644 ~p~~v~llrGNHE~~~ 659 (885)
....+++++||||...
T Consensus 88 ~~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 88 TFRDLILIRGNHDALI 103 (225)
T ss_pred cCCcEEEECCCCCCcc
Confidence 2247999999999754
No 125
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.19 E-value=0.01 Score=63.71 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=46.2
Q ss_pred CeEEEecCCC-C-----------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHH----HHHHHHHhcCC
Q 002749 582 PVKVFGDLHG-Q-----------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI----TLLLALKIEYP 645 (885)
Q Consensus 582 ~i~vvGDiHG-~-----------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl----~ll~~lk~~~p 645 (885)
+++.++|+|- . ...|.++++.+.-...+ .+|+.||++|+..-+.+.. .+|..|+...|
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D------~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~ 75 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQID------ALLVAGDVFDTANPPAEAQELFNAFFRNLSDANP 75 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 5789999993 2 23444555444322222 6899999999986665543 34444444333
Q ss_pred CCEEEeccCCcccc
Q 002749 646 ENVHLIRGNHEAAD 659 (885)
Q Consensus 646 ~~v~llrGNHE~~~ 659 (885)
-.++++.||||...
T Consensus 76 i~v~~i~GNHD~~~ 89 (253)
T TIGR00619 76 IPIVVISGNHDSAQ 89 (253)
T ss_pred ceEEEEccCCCChh
Confidence 57999999999853
No 126
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.14 E-value=0.0081 Score=59.43 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=28.0
Q ss_pred eEEEeccccCCCCChH-H----HHHHHHHHHhcC-CCCEEEeccCCcccc
Q 002749 616 DYLFLGDYVDRGQHSL-E----TITLLLALKIEY-PENVHLIRGNHEAAD 659 (885)
Q Consensus 616 ~~vfLGDyVDRG~~s~-e----vl~ll~~lk~~~-p~~v~llrGNHE~~~ 659 (885)
.+|++||++|.+.... + .+..+.++.... .-.++++.||||...
T Consensus 41 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 41 VVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 7999999999876421 2 222222222222 346999999999753
No 127
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.12 E-value=0.018 Score=61.43 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=38.5
Q ss_pred EEEecCC--CCH---HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCC-----C-------hHH----HHHHHHHHHh
Q 002749 584 KVFGDLH--GQF---GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ-----H-------SLE----TITLLLALKI 642 (885)
Q Consensus 584 ~vvGDiH--G~~---~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~-----~-------s~e----vl~ll~~lk~ 642 (885)
++++|+| +.. ..+..+++.+.-.... ......+|++||++|+.. . ..+ +..+|.+|.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~-~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~- 79 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDS-ASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP- 79 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCccc-ccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc-
Confidence 6899999 432 2223334333211110 000117899999999731 0 111 223333332
Q ss_pred cCCCCEEEeccCCcccc
Q 002749 643 EYPENVHLIRGNHEAAD 659 (885)
Q Consensus 643 ~~p~~v~llrGNHE~~~ 659 (885)
..-.|+++.||||...
T Consensus 80 -~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 80 -SHIKIIIIPGNHDAVR 95 (243)
T ss_pred -cCCeEEEeCCCCCccc
Confidence 2356999999999853
No 128
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.11 E-value=0.014 Score=63.50 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=46.0
Q ss_pred CCeEEEecCC-C-----------CHHHHHHHHHHhCC-C-CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCC
Q 002749 581 APVKVFGDLH-G-----------QFGDLMRLFDEYGF-P-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPE 646 (885)
Q Consensus 581 ~~i~vvGDiH-G-----------~~~~L~~il~~~g~-~-~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~ 646 (885)
-+++.++|+| . ....|.++++.+.. . ..+ -+|+.||++|.|. .+-+..+++.-.+.+.
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D------~vvitGDl~~~~~--~~~~~~~~~~l~~l~~ 86 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFD------LIVATGDLAQDHS--SEAYQHFAEGIAPLRK 86 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCC------EEEECCCCCCCCC--HHHHHHHHHHHhhcCC
Confidence 3589999999 1 24567777776532 1 222 6889999999874 3333333333233456
Q ss_pred CEEEeccCCccc
Q 002749 647 NVHLIRGNHEAA 658 (885)
Q Consensus 647 ~v~llrGNHE~~ 658 (885)
.++++.||||..
T Consensus 87 Pv~~v~GNHD~~ 98 (275)
T PRK11148 87 PCVWLPGNHDFQ 98 (275)
T ss_pred cEEEeCCCCCCh
Confidence 799999999973
No 129
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=96.08 E-value=0.032 Score=61.05 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEE
Q 002749 766 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLI 802 (885)
Q Consensus 766 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~i 802 (885)
....+.+.++++++++++-||.-.-+-+....+++++
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~ 217 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV 217 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEec
Confidence 3467788899999999999998653333333355543
No 130
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=95.96 E-value=0.014 Score=66.95 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=43.9
Q ss_pred CeEEEecCC-CC-H------HH----HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHH----HHHHHHHhcCC
Q 002749 582 PVKVFGDLH-GQ-F------GD----LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI----TLLLALKIEYP 645 (885)
Q Consensus 582 ~i~vvGDiH-G~-~------~~----L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl----~ll~~lk~~~p 645 (885)
+++.++|+| |. + .+ |.++++.+.-...+ .+|+.||++|++..+.+.. .++..|+. .+
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D------~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~ 74 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVD------AIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TG 74 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCC------EEEECCccccCCCCcHHHHHHHHHHHHHHHh-cC
Confidence 578999999 42 1 11 23343433322223 6889999999986655433 33344442 23
Q ss_pred CCEEEeccCCcccc
Q 002749 646 ENVHLIRGNHEAAD 659 (885)
Q Consensus 646 ~~v~llrGNHE~~~ 659 (885)
-.++++.||||...
T Consensus 75 ~~v~~I~GNHD~~~ 88 (407)
T PRK10966 75 CQLVVLAGNHDSVA 88 (407)
T ss_pred CcEEEEcCCCCChh
Confidence 46999999999754
No 131
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=95.89 E-value=0.024 Score=58.37 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=29.8
Q ss_pred eEEEeccccCCCCC---hHHHHHHHHHHHhcCCCCEEEeccCCc
Q 002749 616 DYLFLGDYVDRGQH---SLETITLLLALKIEYPENVHLIRGNHE 656 (885)
Q Consensus 616 ~~vfLGDyVDRG~~---s~evl~ll~~lk~~~p~~v~llrGNHE 656 (885)
.+|++||+++.+.. +.+.+..+++......-.++++.||||
T Consensus 44 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 44 LVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred EEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 68999999997765 355565555443334456899999999
No 132
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=95.79 E-value=0.023 Score=60.17 Aligned_cols=46 Identities=9% Similarity=-0.001 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceE---EecCCeEEEEeccccccCC
Q 002749 766 GPDRVSDFCKRNKLQLIIRAHECVMDGFE---RFAQGQLITLFSATNYCGT 813 (885)
Q Consensus 766 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~---~~~~~~~itvfSa~~y~~~ 813 (885)
+...+.+.+++.++++++-||.-...-.. ...+| |+.+++|.=|-.
T Consensus 181 ~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~g--i~~~~~~~~~~~ 229 (232)
T cd07393 181 DDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGG--IRYQLVSADYLN 229 (232)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcccccccceECC--EEEEEEcchhcC
Confidence 45677888999999999999975432222 12333 566666655543
No 133
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.78 E-value=2.5 Score=47.90 Aligned_cols=180 Identities=21% Similarity=0.190 Sum_probs=95.7
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCC--CC
Q 002749 75 NSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQ--GP 150 (885)
Q Consensus 75 ~dv~~yd~~t~~--W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~--~p 150 (885)
+.++.+|+.+++ |+.-.... ....+...+.++.++.+|+ |.. ...++.+|+.+.+..|+.-...+. ..
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~~~~v~~-~~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~ 226 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIADGGVLV-GFA------GGKLVALDLQTGQPLWEQRVALPKGRTE 226 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEECCEEEE-ECC------CCEEEEEEccCCCEeeeeccccCCCCCc
Confidence 458999998764 87533211 1011223344556776654 332 125899999887777875421110 00
Q ss_pred CCc---cccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCC
Q 002749 151 GPR---YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA 227 (885)
Q Consensus 151 ~~R---~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~ 227 (885)
..| ...+. .+.++.+|+.+. + +.+++||+.+....|..-... .+.....++.+|+...
T Consensus 227 ~~~~~~~~~~p-~~~~~~vy~~~~-~-----g~l~a~d~~tG~~~W~~~~~~---------~~~p~~~~~~vyv~~~--- 287 (377)
T TIGR03300 227 LERLVDVDGDP-VVDGGQVYAVSY-Q-----GRVAALDLRSGRVLWKRDASS---------YQGPAVDDNRLYVTDA--- 287 (377)
T ss_pred hhhhhccCCcc-EEECCEEEEEEc-C-----CEEEEEECCCCcEEEeeccCC---------ccCceEeCCEEEEECC---
Confidence 011 11222 334457776432 2 358999999987789764211 1122345777887542
Q ss_pred CCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCc
Q 002749 228 SGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (885)
Q Consensus 228 ~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (885)
-..++.++..+ |.-.|.... . ..+...+.+..++++|+... ...++++|..+.+
T Consensus 288 ----~G~l~~~d~~t-G~~~W~~~~-~--~~~~~ssp~i~g~~l~~~~~----------~G~l~~~d~~tG~ 341 (377)
T TIGR03300 288 ----DGVVVALDRRS-GSELWKNDE-L--KYRQLTAPAVVGGYLVVGDF----------EGYLHWLSREDGS 341 (377)
T ss_pred ----CCeEEEEECCC-CcEEEcccc-c--cCCccccCEEECCEEEEEeC----------CCEEEEEECCCCC
Confidence 23577777753 344454421 0 11222333456788877532 2358889987764
No 134
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.45 E-value=0.038 Score=63.00 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=53.4
Q ss_pred CeEEEecCCCC------------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhc------
Q 002749 582 PVKVFGDLHGQ------------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIE------ 643 (885)
Q Consensus 582 ~i~vvGDiHG~------------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~------ 643 (885)
+|.+++|+|-- +..|.++++.+.-...+ -+|+.||++|+..-|.+++..++.+-.+
T Consensus 5 KIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD------~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~ 78 (405)
T TIGR00583 5 RILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVD------MILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDK 78 (405)
T ss_pred EEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHhhccCC
Confidence 58999999942 55777788777543333 6888999999999998888665554322
Q ss_pred ------------------------------CCCCEEEeccCCcccc
Q 002749 644 ------------------------------YPENVHLIRGNHEAAD 659 (885)
Q Consensus 644 ------------------------------~p~~v~llrGNHE~~~ 659 (885)
..-.||.|-||||...
T Consensus 79 p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 79 PCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred ccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1236999999999865
No 135
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=95.19 E-value=0.37 Score=51.81 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=26.6
Q ss_pred cccCCCCCc--ee-EeCHHHHHHHHHHcCCeEEEEeccc
Q 002749 753 LRPNARGPG--LV-TFGPDRVSDFCKRNKLQLIIRAHEC 788 (885)
Q Consensus 753 ~~~n~rg~~--~~-~fg~~~~~~fl~~~~l~~iiR~H~~ 788 (885)
+.+.+++.| +- .-+++..++.|++.+-.+|.-||+-
T Consensus 188 ~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH 226 (257)
T cd08163 188 KTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDH 226 (257)
T ss_pred CCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCC
Confidence 344444444 11 3588999999999999999999974
No 136
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.10 E-value=0.046 Score=58.75 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=21.7
Q ss_pred HHHHHHHcCCeEEEEeccccccceEEe
Q 002749 770 VSDFCKRNKLQLIIRAHECVMDGFERF 796 (885)
Q Consensus 770 ~~~fl~~~~l~~iiR~H~~~~~G~~~~ 796 (885)
+.+.+++.++++++-||.-...+.+..
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceee
Confidence 778889999999999998776664443
No 137
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.03 E-value=0.086 Score=54.80 Aligned_cols=196 Identities=22% Similarity=0.265 Sum_probs=102.5
Q ss_pred EEecCCCC------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccC--CCCC-----hHHHHHHHHHHHhcCCCCEEEe
Q 002749 585 VFGDLHGQ------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVD--RGQH-----SLETITLLLALKIEYPENVHLI 651 (885)
Q Consensus 585 vvGDiHG~------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVD--RG~~-----s~evl~ll~~lk~~~p~~v~ll 651 (885)
+|+|+|=. -+.|+++++.... .++ .+.+|||++| .|.+ --+|...|..+ ..-..+++.+
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~-~ad------~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~-a~~G~~v~~i 73 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAA-QAD------ALYILGDIFDGWIGDDEPPQLHRQVAQKLLRL-ARKGTRVYYI 73 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccc-cCc------EEEEechhhhhhhcCCcccHHHHHHHHHHHHH-HhcCCeEEEe
Confidence 68888844 3445566655432 333 7889999997 3332 23444444444 3345789999
Q ss_pred ccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhccCCceEEEE---cCeEEEecCCCCCCCc------------C
Q 002749 652 RGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI---EKKIICMHGGIGRSIH------------S 716 (885)
Q Consensus 652 rGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i---~~~il~vHgGi~~~~~------------~ 716 (885)
.||||. .+...++ ...+ .+.-+|-..++ +.+++++||-.-.... -
T Consensus 74 ~GN~Df-ll~~~f~------~~~g-------------~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~ 133 (237)
T COG2908 74 HGNHDF-LLGKRFA------QEAG-------------GMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWA 133 (237)
T ss_pred cCchHH-HHHHHHH------hhcC-------------ceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccH
Confidence 999994 3332221 1111 12233444333 5799999997643210 0
Q ss_pred HHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCc--eeEeCHHHHHHHHHHcCCeEEEEeccccccceE
Q 002749 717 VEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPG--LVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 794 (885)
Q Consensus 717 ~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~--~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 794 (885)
..+..-+.+|+..- ..+..=+|+.- .|........ +.-..+.++.+-+++++++.+|-||.-.+..-.
T Consensus 134 ~~~~lflnl~l~~R---~ri~~k~r~~s-------~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~ 203 (237)
T COG2908 134 WLQLLFLNLPLRVR---RRIAYKIRSLS-------SWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN 203 (237)
T ss_pred HHHHHHHHhHHHHH---HHHHHHHHHhh-------HHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhcc
Confidence 11111122222200 01111244443 1111111111 122467788889999999999999987655443
Q ss_pred EecCCeEEEEecccccc--CCCCCeEEEEEEcCcce
Q 002749 795 RFAQGQLITLFSATNYC--GTANNAGAILVVGRGLV 828 (885)
Q Consensus 795 ~~~~~~~itvfSa~~y~--~~~~n~ga~l~~~~~~~ 828 (885)
. ++ ..|| |.-...++++.++.+..
T Consensus 204 i--~~--------~~yi~lGdW~~~~s~~~v~~~~~ 229 (237)
T COG2908 204 I--PG--------ITYINLGDWVSEGSILEVDDGGL 229 (237)
T ss_pred C--CC--------ceEEecCcchhcceEEEEecCcE
Confidence 2 11 2233 22235678888877653
No 138
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=94.89 E-value=2.7 Score=43.59 Aligned_cols=205 Identities=18% Similarity=0.206 Sum_probs=116.4
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEecccc--CCCCChHHHHHH-HHHHHhcCCCCEEEeccCCcc
Q 002749 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYV--DRGQHSLETITL-LLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyV--DRG~~s~evl~l-l~~lk~~~p~~v~llrGNHE~ 657 (885)
.++..+.|+||.++.|.++++.......+ -+++.||+. +.|+.-.-.-.. +..++ .+-..++.+.||-|.
T Consensus 4 mkil~vtDlHg~~~~~~k~~~~~~~~~~D------~lviaGDlt~~~~~~~~~~~~~~~~e~l~-~~~~~v~avpGNcD~ 76 (226)
T COG2129 4 MKILAVTDLHGSEDSLKKLLNAAADIRAD------LLVIAGDLTYFHFGPKEVAEELNKLEALK-ELGIPVLAVPGNCDP 76 (226)
T ss_pred ceEEEEeccccchHHHHHHHHHHhhccCC------EEEEecceehhhcCchHHHHhhhHHHHHH-hcCCeEEEEcCCCCh
Confidence 46899999999999999999887754443 678899999 877643222221 33443 234689999999887
Q ss_pred cchhhhcCChHHHHHHhCCCCchhhhhhhhhhccCCceEEEEcCeEEEecCCCCCCC------cCHHHhhcccCCcccCC
Q 002749 658 ADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSI------HSVEQIEKLERPITMDA 731 (885)
Q Consensus 658 ~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~~~~------~~~~~i~~~~rp~~~~~ 731 (885)
..+-.. +...+. .+.. -...+++--||-=||..|.- .+-++|...-+-.....
T Consensus 77 ~~v~~~-------l~~~~~----~v~~----------~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~ 135 (226)
T COG2129 77 PEVIDV-------LKNAGV----NVHG----------RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKA 135 (226)
T ss_pred HHHHHH-------HHhccc----cccc----------ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcc
Confidence 543211 111211 1111 12234444455557876653 23455554332221111
Q ss_pred CCcchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEecccccc
Q 002749 732 GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYC 811 (885)
Q Consensus 732 ~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~ 811 (885)
....-.=++-+.|-.. ... ++-| ...-|..++.+++++.+-.+.|-||=--..|++.- | =||+-.|.-.
T Consensus 136 ~~~~~Il~~HaPP~gt-~~d----~~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~i--G--~TivVNPG~~ 204 (226)
T COG2129 136 DNPVNILLTHAPPYGT-LLD----TPSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKI--G--NTIVVNPGPL 204 (226)
T ss_pred cCcceEEEecCCCCCc-ccc----CCCC--ccccchHHHHHHHHHhCCceEEEeeeccccccccc--C--CeEEECCCCc
Confidence 1100011123334321 111 2323 23458899999999999999999985555676642 2 2666666543
Q ss_pred CCCCCeEEEEEEcCc
Q 002749 812 GTANNAGAILVVGRG 826 (885)
Q Consensus 812 ~~~~n~ga~l~~~~~ 826 (885)
+ .-..|++.++++
T Consensus 205 ~--~g~yA~i~l~~~ 217 (226)
T COG2129 205 G--EGRYALIELEKE 217 (226)
T ss_pred c--CceEEEEEecCc
Confidence 2 235688888776
No 139
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.69 E-value=12 Score=44.17 Aligned_cols=203 Identities=18% Similarity=0.211 Sum_probs=101.0
Q ss_pred cCcEEEEECCCCc--EEEecCCCCCCcccC--------------ccEEEEE---CCEEEEEcCcCC-----------CCC
Q 002749 74 TNSVHLYDVLTRK--WTRIRPAGEPPSPRA--------------AHAAAAV---GTMVVFQGGIGP-----------AGH 123 (885)
Q Consensus 74 ~~dv~~yd~~t~~--W~~l~~~g~~P~~R~--------------~hsa~~~---~~~lyv~GG~~~-----------~~~ 123 (885)
...++.||..+++ |+.-.....+-..+. -++..++ ++.||+..|-+. .+.
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 5679999998764 875332111100010 0112233 467777655321 223
Q ss_pred ccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEE-----ECCc--EEEEEecCCCCcccCcEEEEecCCCCeeEEEc
Q 002749 124 STDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDL-----VSQR--YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL 196 (885)
Q Consensus 124 ~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~-----~~~~--~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i 196 (885)
..+.++.+|..+.+..|+.-......-.-+......+ ++.. .++++|..++ .++++|..+....|+.-
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G-----~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNG-----FFYVLDRTTGKLISARP 328 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCc-----eEEEEECCCCcEeeEeE
Confidence 4568999999998889986522111000011111111 1221 2444555443 48999999998889764
Q ss_pred CCCCCCCCCcccceEEEecCCEEEEEccCCCC-----------CCcccceEEEEcCCCCeeEEEeCCCCCC------Ccc
Q 002749 197 NPEGDRPSARMYATASARSDGMFLLCGGRDAS-----------GAPLADAYGLLMHRNGQWEWTLAPGVAP------SPR 259 (885)
Q Consensus 197 ~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~-----------~~~l~dv~~~d~~~~~~W~w~~~~~~~P------~~R 259 (885)
.... .. ....+.+|+....... ......++.+|.. +|+-.|....+... .+.
T Consensus 329 ~~~~---------~~-~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~-tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 329 EVEQ---------PM-AYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK-TGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred eecc---------cc-ccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCC-CCcEeeEeeCCccccccccCCcc
Confidence 3210 01 1112556653211100 0112346677765 44666766543100 122
Q ss_pred ceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCc--EEE
Q 002749 260 YQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--WLD 302 (885)
Q Consensus 260 ~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~--W~~ 302 (885)
.....+..++.+|+- .. ...+++||.++.+ |+.
T Consensus 398 ~~~~~~~~g~~v~~g-~~---------dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 398 WGGSLATAGNLVFAG-AA---------DGYFRAFDATTGKELWKF 432 (488)
T ss_pred cCcceEecCCeEEEE-CC---------CCeEEEEECCCCceeeEE
Confidence 233444556655554 32 2358999998874 764
No 140
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=94.48 E-value=0.076 Score=53.36 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=28.7
Q ss_pred eEEEeccccCCCCCh--HH---HHHHHHHHHhcC-----CCCEEEeccCCcccc
Q 002749 616 DYLFLGDYVDRGQHS--LE---TITLLLALKIEY-----PENVHLIRGNHEAAD 659 (885)
Q Consensus 616 ~~vfLGDyVDRG~~s--~e---vl~ll~~lk~~~-----p~~v~llrGNHE~~~ 659 (885)
.+||+||++|.+... .+ .+..+..+.... .-.++++.||||...
T Consensus 48 ~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 48 VVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred EEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 799999999988743 22 233333322111 356999999999864
No 141
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.23 E-value=0.97 Score=50.75 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=73.5
Q ss_pred CCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCc------ccce
Q 002749 162 SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP------LADA 235 (885)
Q Consensus 162 ~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~------l~dv 235 (885)
.+..|+..+.. ..+.+||+++. .=. ....++.+.....++.+++ .||++......... .-++
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~--av~---~~P~l~~pk~~pisv~VG~-~LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTR--AVA---TGPRLHSPKRCPISVSVGD-KLYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCC--eEe---ccCCCCCCCcceEEEEeCC-eEEEeeccCccccccCccceeEEE
Confidence 34466655443 34899999997 222 3333345555555555555 49988776433221 1123
Q ss_pred EEEE-----cCCCCeeEEEeCCCCCCCccce-------eEEEEE-CCEEEE-EcccCCCCCCccCCCcEEEEECCCCcEE
Q 002749 236 YGLL-----MHRNGQWEWTLAPGVAPSPRYQ-------HAAVFV-GARLHV-TGGALRGGRAIEGEAAVAVLDTAAGVWL 301 (885)
Q Consensus 236 ~~~d-----~~~~~~W~w~~~~~~~P~~R~~-------hs~~~~-~~~l~V-~GG~~~~~~~~~~~~~v~~yD~~t~~W~ 301 (885)
..|+ ......|.|..++.. |..+.. .+-+++ +..|+| .-|.. ...+.||+++.+|+
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~P-Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysfDt~~~~W~ 212 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPPP-PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSFDTESHEWR 212 (342)
T ss_pred eccccccccccCCCcceEEcCCCC-CccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEEEcCCccee
Confidence 3333 235679999998763 444332 344555 677888 43321 24899999999999
Q ss_pred EccCC
Q 002749 302 DRNGL 306 (885)
Q Consensus 302 ~v~~~ 306 (885)
++..-
T Consensus 213 ~~GdW 217 (342)
T PF07893_consen 213 KHGDW 217 (342)
T ss_pred eccce
Confidence 99764
No 142
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=93.94 E-value=0.13 Score=56.06 Aligned_cols=71 Identities=24% Similarity=0.245 Sum_probs=46.5
Q ss_pred CCeEEEecCCCCHHH--HHHHHHHhCCCCCCCCcceeeEEEeccccCC-CCCh-HHHHHHHHHHHhcCCCCEEEeccCCc
Q 002749 581 APVKVFGDLHGQFGD--LMRLFDEYGFPSTAGDITYIDYLFLGDYVDR-GQHS-LETITLLLALKIEYPENVHLIRGNHE 656 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~--L~~il~~~g~~~~~~~~~~~~~vfLGDyVDR-G~~s-~evl~ll~~lk~~~p~~v~llrGNHE 656 (885)
.+|+.+.|+|-.... ..+.+........+ -+++.|||+|+ .+.. -.++..|..|+. |-.+|.+-||||
T Consensus 45 ~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~D------livltGD~~~~~~~~~~~~~~~~L~~L~~--~~gv~av~GNHd 116 (284)
T COG1408 45 LKIVQLSDLHSLPFREEKLALLIAIANELPD------LIVLTGDYVDGDRPPGVAALALFLAKLKA--PLGVFAVLGNHD 116 (284)
T ss_pred eEEEEeehhhhchhhHHHHHHHHHHHhcCCC------EEEEEeeeecCCCCCCHHHHHHHHHhhhc--cCCEEEEecccc
Confidence 459999999987655 22233332222223 68999999995 4444 445556666654 457999999998
Q ss_pred ccc
Q 002749 657 AAD 659 (885)
Q Consensus 657 ~~~ 659 (885)
...
T Consensus 117 ~~~ 119 (284)
T COG1408 117 YGV 119 (284)
T ss_pred ccc
Confidence 754
No 143
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=93.87 E-value=0.066 Score=54.62 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=32.2
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHHHhcCC----CCEEEeccCCccc
Q 002749 616 DYLFLGDYVDRGQHS--LETITLLLALKIEYP----ENVHLIRGNHEAA 658 (885)
Q Consensus 616 ~~vfLGDyVDRG~~s--~evl~ll~~lk~~~p----~~v~llrGNHE~~ 658 (885)
-++||||++|.|+.+ .|....+..++..|+ -.++.|.||||.-
T Consensus 45 ~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 45 IVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred EEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 689999999999853 346666666654433 4688999999974
No 144
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=93.87 E-value=0.14 Score=50.24 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=48.1
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCc
Q 002749 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 656 (885)
Q Consensus 584 ~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 656 (885)
.|+||+||+++.+.+-++.+.-. .+ ...-+|++||+..-....-+ +.-++.=+.+.|--.+++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k--~g--pFd~~ic~Gdff~~~~~~~~-~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKK--KG--PFDALLCVGDFFGDDEDDEE-LEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcc--cC--CeeEEEEecCccCCccchhh-HHHHhcCCccCCCCEEEECCCCC
Confidence 48999999999998888775322 12 12257889999976555533 33333345567888999999998
No 145
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.70 E-value=3.1 Score=45.26 Aligned_cols=113 Identities=14% Similarity=0.194 Sum_probs=69.4
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeec--CCCC
Q 002749 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ--GQGP 150 (885)
Q Consensus 74 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~-~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~--~~~p 150 (885)
...+..||+.+.+|..+...- .. .-.++... ++.||+.|-....+.....+-.||..+ .+|..+... ...|
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i---~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ip 88 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGI---SG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIP 88 (281)
T ss_pred CCEEEEEECCCCEeecCCCCc---eE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCC
Confidence 467889999999999875321 11 12333333 678888886544443566688999999 459888542 2355
Q ss_pred CCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCC
Q 002749 151 GPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNP 198 (885)
Q Consensus 151 ~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~ 198 (885)
.+....+....+...+++.|.. ..-..-+..|| .. +|..+..
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~d--Gs--~W~~i~~ 130 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRS--ANGSTFLMKYD--GS--SWSSIGS 130 (281)
T ss_pred CcEEEEEeeccCCceEEEecee--cCCCceEEEEc--CC--ceEeccc
Confidence 6554444333344467777664 11233466675 33 6999865
No 146
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=93.50 E-value=0.19 Score=48.48 Aligned_cols=41 Identities=24% Similarity=0.312 Sum_probs=28.1
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccch
Q 002749 616 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 616 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
.+.+|||+.-.-..--+...++-+| |++++|++||||--.-
T Consensus 48 ~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~~ 88 (186)
T COG4186 48 VLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCHP 88 (186)
T ss_pred eEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCcc
Confidence 6889999985444333434444443 6899999999997543
No 147
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=93.04 E-value=0.17 Score=54.08 Aligned_cols=66 Identities=32% Similarity=0.334 Sum_probs=41.8
Q ss_pred CeEEEecCCCCH---------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH-----HHHHHHHHHHhcCCCC
Q 002749 582 PVKVFGDLHGQF---------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-----ETITLLLALKIEYPEN 647 (885)
Q Consensus 582 ~i~vvGDiHG~~---------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~-----evl~ll~~lk~~~p~~ 647 (885)
.|+.++|+||.+ ..|.++++...-...+ .-+|..||+++....+. .++..|-++ .-
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~-----~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~-----g~ 71 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENEN-----TLLLDAGDNFDGSPPSTATKGEANIELMNAL-----GY 71 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCC-----eEEEeCCccCCCccchhccCCcHHHHHHHhc-----CC
Confidence 478999999887 4556666665432111 14577999999887653 444444443 22
Q ss_pred EEEeccCCcc
Q 002749 648 VHLIRGNHEA 657 (885)
Q Consensus 648 v~llrGNHE~ 657 (885)
-++..||||.
T Consensus 72 d~~~~GNHe~ 81 (252)
T cd00845 72 DAVTIGNHEF 81 (252)
T ss_pred CEEeeccccc
Confidence 3345699996
No 148
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=92.97 E-value=0.34 Score=50.62 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=44.0
Q ss_pred cCCeEEEecCCCCHHHHH----------------HHHHH-h-CCCCCCCCcceeeEEEeccccCCCC-----ChHHHHHH
Q 002749 580 RAPVKVFGDLHGQFGDLM----------------RLFDE-Y-GFPSTAGDITYIDYLFLGDYVDRGQ-----HSLETITL 636 (885)
Q Consensus 580 ~~~i~vvGDiHG~~~~L~----------------~il~~-~-g~~~~~~~~~~~~~vfLGDyVDRG~-----~s~evl~l 636 (885)
..+..|+.|+|=-|+..+ +.+.. . .+.+ + ++|+|||.-.-.+ ...|+-.+
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p-~------~lIilGD~KH~~~~~~~~e~~~~~~f 91 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGP-K------RLIILGDLKHEFGKSLRQEKEEVREF 91 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCC-C------EEEEcCccccccCccccccHHHHHHH
Confidence 468999999996554433 22321 1 1112 2 7999999985333 23445455
Q ss_pred HHHHHhcCCCCEEEeccCCcccch
Q 002749 637 LLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 637 l~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
+-.++.. .++++|||||...-
T Consensus 92 ~~~~~~~---evi~i~GNHD~~i~ 112 (235)
T COG1407 92 LELLDER---EVIIIRGNHDNGIE 112 (235)
T ss_pred HHHhccC---cEEEEeccCCCccc
Confidence 5444433 59999999998543
No 149
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.90 E-value=2.3 Score=47.78 Aligned_cols=120 Identities=17% Similarity=0.262 Sum_probs=73.5
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCc
Q 002749 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~ 124 (885)
+.+|+..+.. ..+.+||..+..-..++.+ +.+...-.++.++++||++.........
T Consensus 76 gskIv~~d~~--------------------~~t~vyDt~t~av~~~P~l---~~pk~~pisv~VG~~LY~m~~~~~~~~~ 132 (342)
T PF07893_consen 76 GSKIVAVDQS--------------------GRTLVYDTDTRAVATGPRL---HSPKRCPISVSVGDKLYAMDRSPFPEPA 132 (342)
T ss_pred CCeEEEEcCC--------------------CCeEEEECCCCeEeccCCC---CCCCcceEEEEeCCeEEEeeccCccccc
Confidence 7788877554 2377999999988766543 3455555778889999999875322111
Q ss_pred c----CcEEEE--E------ecCCcceEEEEeecCCCCCCccc-------cEEEEECCcEEEE-EecCCCCcccCcEEEE
Q 002749 125 T----DDLYVL--D------LTNDKFKWHRVVVQGQGPGPRYG-------HVMDLVSQRYLVS-VSGNDGKRVLSDAWAL 184 (885)
Q Consensus 125 ~----~dl~~~--D------~~~~~~~W~~v~~~~~~p~~R~~-------ht~~~~~~~~lyv-~GG~~~~~~~ndv~~~ 184 (885)
. ..++.+ + .....|.|..+ +++|..+.. .+.+++++..|+| .-|.. .-.++|
T Consensus 133 ~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~L---P~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysf 204 (342)
T PF07893_consen 133 GRPDFPCFEALVYRPPPDDPSPEESWSWRSL---PPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSF 204 (342)
T ss_pred cCccceeEEEeccccccccccCCCcceEEcC---CCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEE
Confidence 0 144444 3 23456899998 344443332 1222334556665 33221 237999
Q ss_pred ecCCCCeeEEEcC
Q 002749 185 DTAQKPYVWQRLN 197 (885)
Q Consensus 185 d~~t~~~~W~~i~ 197 (885)
|+.+. +|++..
T Consensus 205 Dt~~~--~W~~~G 215 (342)
T PF07893_consen 205 DTESH--EWRKHG 215 (342)
T ss_pred EcCCc--ceeecc
Confidence 99999 899884
No 150
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=92.33 E-value=0.28 Score=50.01 Aligned_cols=66 Identities=20% Similarity=0.124 Sum_probs=40.0
Q ss_pred cCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH-HHHHHHHHHHhcC---------------------C
Q 002749 588 DLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-ETITLLLALKIEY---------------------P 645 (885)
Q Consensus 588 DiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~-evl~ll~~lk~~~---------------------p 645 (885)
|++|+=.=|.++++.+-....- ..++||||++|.|--+- |--.....++..+ .
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~P-----d~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~ 98 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKP-----DAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGK 98 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCC-----CEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCC
Confidence 4456655667777665432111 16889999999985332 3334444444333 1
Q ss_pred CCEEEeccCCccc
Q 002749 646 ENVHLIRGNHEAA 658 (885)
Q Consensus 646 ~~v~llrGNHE~~ 658 (885)
-.+++|.||||.-
T Consensus 99 i~~i~V~GNHDIG 111 (193)
T cd08164 99 TPLINIAGNHDVG 111 (193)
T ss_pred ceEEEECCcccCC
Confidence 3578999999984
No 151
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.22 E-value=30 Score=40.93 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=65.8
Q ss_pred cCcEEEEECCCCc--EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCC--CCccCcEEEEEecCCcceEEEEeecCCC
Q 002749 74 TNSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPA--GHSTDDLYVLDLTNDKFKWHRVVVQGQG 149 (885)
Q Consensus 74 ~~dv~~yd~~t~~--W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~--~~~~~dl~~~D~~~~~~~W~~v~~~~~~ 149 (885)
...++.+|..+.+ |+.-......+.-....+.++.++.+|+....... ......++.||..+.+..|..-.....+
T Consensus 119 ~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~ 198 (488)
T cd00216 119 DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDP 198 (488)
T ss_pred CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCc
Confidence 3678999998764 88543211000111223445566776654221110 0234579999999888889765321111
Q ss_pred CCCc---------------cccEEEEE-CCcEEEEEecCCC------------CcccCcEEEEecCCCCeeEEEcC
Q 002749 150 PGPR---------------YGHVMDLV-SQRYLVSVSGNDG------------KRVLSDAWALDTAQKPYVWQRLN 197 (885)
Q Consensus 150 p~~R---------------~~ht~~~~-~~~~lyv~GG~~~------------~~~~ndv~~~d~~t~~~~W~~i~ 197 (885)
...+ .-.+.++- .++.+|+..+... ....+.++.+|..+....|+.-.
T Consensus 199 ~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 199 NAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT 274 (488)
T ss_pred CCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC
Confidence 1111 00122222 3456776544321 12335799999999999998643
No 152
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=91.09 E-value=3.4 Score=47.42 Aligned_cols=191 Identities=20% Similarity=0.219 Sum_probs=102.0
Q ss_pred CCeEEEecCCC-CH----HHHHHHHHHhCCCCCCCCcceeeEEE-eccccCC-C-----------CChHHHHHHHHHHHh
Q 002749 581 APVKVFGDLHG-QF----GDLMRLFDEYGFPSTAGDITYIDYLF-LGDYVDR-G-----------QHSLETITLLLALKI 642 (885)
Q Consensus 581 ~~i~vvGDiHG-~~----~~L~~il~~~g~~~~~~~~~~~~~vf-LGDyVDR-G-----------~~s~evl~ll~~lk~ 642 (885)
..+.+++|+|= .. +.+..+++.++-+.+ --...+|+. -||.||- | .+..|-...+..+--
T Consensus 226 v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~--~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~ 303 (481)
T COG1311 226 VYVALISDIHRGSKEFLEDEFEKFIDWLNGPGD--LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLD 303 (481)
T ss_pred eEEEEEeeeecccHHHHHHHHHHHHHHhcCCcc--cccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHh
Confidence 34899999996 22 334444555544432 112236665 6799994 2 233444555555544
Q ss_pred cCCC--CEEEeccCCcccchhhhc-CChHHHHHHhCCCCchhhhhhhhhhccCCceEEEEc-CeEEEecCCCCCCCcCHH
Q 002749 643 EYPE--NVHLIRGNHEAADINALF-GFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSIHSVE 718 (885)
Q Consensus 643 ~~p~--~v~llrGNHE~~~~~~~~-gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~-~~il~vHgGi~~~~~~~~ 718 (885)
.-|. .|++.+||||..-..... .|.......| ...+-.|-.=|.-.-++ ..+|..|| .+++
T Consensus 304 ~vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf---------~~~n~~~v~NP~~~~l~G~~vL~~hG------~sid 368 (481)
T COG1311 304 QVPEHIKVFIMPGNHDAVRQALPQPHFPELIKSLF---------SLNNLLFVSNPALVSLHGVDVLIYHG------RSID 368 (481)
T ss_pred hCCCCceEEEecCCCCccccccCCCCcchhhcccc---------cccceEecCCCcEEEECCEEEEEecC------CCHH
Confidence 5555 588899999986543322 3333322222 22211122224433343 46888888 5677
Q ss_pred HhhcccCCcccCCCC-------------cchhccccCCCCCCCCCCCcccCCCCCceeEeCHHHHHHHHHHcCCeEEEEe
Q 002749 719 QIEKLERPITMDAGS-------------IILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRA 785 (885)
Q Consensus 719 ~i~~~~rp~~~~~~~-------------~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~ 785 (885)
||...-.....+... +..-+-+|.-|...| +| ++ .---++++-|
T Consensus 369 Dii~~vP~~~~~~~~~ame~lLk~rHlaPtygg~~p~aP~~kD---------------~l---VI-----eevPDv~~~G 425 (481)
T COG1311 369 DIIKLVPGADYDSPLKAMEELLKRRHLAPTYGGTLPIAPETKD---------------YL---VI-----EEVPDVFHTG 425 (481)
T ss_pred HHHhhCCCCCccchHHHHHHHHHhcccCCCCCCccccccCCcC---------------ce---ee-----ccCCcEEEEc
Confidence 765543332221111 112233444443211 00 01 1114677889
Q ss_pred ccccccceEEecCCeEEEEeccccccC
Q 002749 786 HECVMDGFERFAQGQLITLFSATNYCG 812 (885)
Q Consensus 786 H~~~~~G~~~~~~~~~itvfSa~~y~~ 812 (885)
|+.. .|+..+.+.++|-.++-+.+..
T Consensus 426 hvh~-~g~~~y~gv~~vns~T~q~qTe 451 (481)
T COG1311 426 HVHK-FGTGVYEGVNLVNSGTWQEQTE 451 (481)
T ss_pred cccc-cceeEEeccceEEeeeecchhc
Confidence 9876 8999988989998888876653
No 153
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=90.93 E-value=0.3 Score=50.37 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=43.9
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHH-------------------------HHH
Q 002749 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLE-------------------------TIT 635 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~e-------------------------vl~ 635 (885)
.+|..++|.||+++.|.++.+.+.-...+ -+||+||++-....+-| .+.
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D------~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPD------AVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-S------EEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCC------EEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 45899999999999999998776433333 79999999975544433 333
Q ss_pred HHHHHHhcCCCCEEEeccCCcccc
Q 002749 636 LLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 636 ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
-++..--..+--++.|+||||...
T Consensus 80 ~ff~~L~~~~~p~~~vPG~~Dap~ 103 (255)
T PF14582_consen 80 KFFRILGELGVPVFVVPGNMDAPE 103 (255)
T ss_dssp HHHHHHHCC-SEEEEE--TTS-SH
T ss_pred HHHHHHHhcCCcEEEecCCCCchH
Confidence 334433445667999999999854
No 154
>PLN02533 probable purple acid phosphatase
Probab=90.13 E-value=0.45 Score=55.03 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=39.0
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH--H-HHHHHHHHHhcCCCCEEEeccCCcc
Q 002749 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL--E-TITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~--e-vl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
.+++++||+|-. ......++.+.....+ -+|++||+++-+.+.- + -..++..+.... -++.+.||||.
T Consensus 140 ~~f~v~GDlG~~-~~~~~tl~~i~~~~pD------~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~--P~m~~~GNHE~ 210 (427)
T PLN02533 140 IKFAVSGDLGTS-EWTKSTLEHVSKWDYD------VFILPGDLSYANFYQPLWDTFGRLVQPLASQR--PWMVTHGNHEL 210 (427)
T ss_pred eEEEEEEeCCCC-cccHHHHHHHHhcCCC------EEEEcCccccccchHHHHHHHHHHhhhHhhcC--ceEEeCccccc
Confidence 458999999532 2222333333222222 5788999997543321 1 122333333333 48899999998
Q ss_pred cc
Q 002749 658 AD 659 (885)
Q Consensus 658 ~~ 659 (885)
..
T Consensus 211 ~~ 212 (427)
T PLN02533 211 EK 212 (427)
T ss_pred cc
Confidence 64
No 155
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.70 E-value=4.3 Score=44.09 Aligned_cols=125 Identities=16% Similarity=0.175 Sum_probs=69.7
Q ss_pred EEEcCcCC-CCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCc-ccCcEEEEecCCCC
Q 002749 113 VFQGGIGP-AGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWALDTAQKP 190 (885)
Q Consensus 113 yv~GG~~~-~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~-~~ndv~~~d~~t~~ 190 (885)
||.|-... +......+..||..+. +|..+ +.. ..-.-.++....++.+|+.|-..... ....+-.||..+.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~--qW~~~---g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~- 74 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNS--QWSSP---GNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ- 74 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCC--EeecC---CCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC-
Confidence 44444433 3335778999999994 49998 433 21122344344566888776543332 3456888999999
Q ss_pred eeEEEcCCC--CCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCC
Q 002749 191 YVWQRLNPE--GDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPG 253 (885)
Q Consensus 191 ~~W~~i~~~--g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~ 253 (885)
+|..+... ...|.+-..-.........+++.|.. ..+ ..-+..||-. +|..+..
T Consensus 75 -~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~dGs-----~W~~i~~ 130 (281)
T PF12768_consen 75 -TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG--STFLMKYDGS-----SWSSIGS 130 (281)
T ss_pred -eeeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC--CceEEEEcCC-----ceEeccc
Confidence 99888763 24444432122222233467776664 322 2334555433 5666654
No 156
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.08 E-value=57 Score=38.95 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=64.0
Q ss_pred CcEEEEECCCCc--EEEecCCCC--CC---cccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecC
Q 002749 75 NSVHLYDVLTRK--WTRIRPAGE--PP---SPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQG 147 (885)
Q Consensus 75 ~dv~~yd~~t~~--W~~l~~~g~--~P---~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~ 147 (885)
+.++.+|..+++ |+.-..... .+ ......+.++.+++||+... ...++.+|..+.+..|+.-..
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~W~~~~~-- 149 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVVWSKKNG-- 149 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEEeecccc--
Confidence 468999998764 875432110 00 01122334666788887432 234999999998888986521
Q ss_pred CCCC-CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcC
Q 002749 148 QGPG-PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLN 197 (885)
Q Consensus 148 ~~p~-~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~ 197 (885)
.... .....+-++.+ +.+|+............+..||.++....|+.-.
T Consensus 150 ~~~~~~~~tssP~v~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 150 DYKAGYTITAAPLVVK-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred cccccccccCCcEEEC-CEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 1111 11122233444 4666543222222345799999999988887543
No 157
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=88.54 E-value=0.68 Score=50.30 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=15.6
Q ss_pred HHHHHHHH-cCCeEEEEecccc
Q 002749 769 RVSDFCKR-NKLQLIIRAHECV 789 (885)
Q Consensus 769 ~~~~fl~~-~~l~~iiR~H~~~ 789 (885)
...+++++ -++++||=||+-+
T Consensus 208 ~~~~la~~~~~vD~IlgGHsH~ 229 (277)
T cd07410 208 AAYELAEEVPGIDAILTGHQHR 229 (277)
T ss_pred HHHHHHhcCCCCcEEEeCCCcc
Confidence 34566666 6899999999864
No 158
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=87.71 E-value=1.4 Score=50.46 Aligned_cols=73 Identities=21% Similarity=0.169 Sum_probs=48.2
Q ss_pred CeEEEecCCCC-------------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcC---C
Q 002749 582 PVKVFGDLHGQ-------------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEY---P 645 (885)
Q Consensus 582 ~i~vvGDiHG~-------------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~---p 645 (885)
++..++|+|=- +.+|..+++.+.-...+ -+|+-||+.|++.=|.+++.++...-.+. .
T Consensus 2 kilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD------~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~ 75 (390)
T COG0420 2 KILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVD------FVLIAGDLFDTNNPSPRALKLFLEALRRLKDAG 75 (390)
T ss_pred eeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCC------EEEEccccccCCCCCHHHHHHHHHHHHHhccCC
Confidence 56777888743 23444444444322223 58889999999998888887665542222 1
Q ss_pred CCEEEeccCCcccch
Q 002749 646 ENVHLIRGNHEAADI 660 (885)
Q Consensus 646 ~~v~llrGNHE~~~~ 660 (885)
--|++|.||||....
T Consensus 76 Ipv~~I~GNHD~~~~ 90 (390)
T COG0420 76 IPVVVIAGNHDSPSR 90 (390)
T ss_pred CcEEEecCCCCchhc
Confidence 369999999998653
No 159
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=87.20 E-value=24 Score=39.96 Aligned_cols=225 Identities=12% Similarity=0.055 Sum_probs=106.9
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEE-cCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCC
Q 002749 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQ-GGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 74 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~-GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~ 152 (885)
...+|.+|+.+.+=++|+.... ....+-..+.-++.+|++ .+ ..|+.+|+.+.+ =..+. ..|..
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~~~~~~~Yv~~~--------~~l~~vdL~T~e--~~~vy---~~p~~ 123 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPG--DNTFGGFLSPDDRALYYVKNG--------RSLRRVDLDTLE--ERVVY---EVPDD 123 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETT--------TEEEEEETTT----EEEEE---E--TT
T ss_pred CcceEEEEcccCEEEECccCCC--CCccceEEecCCCeEEEEECC--------CeEEEEECCcCc--EEEEE---ECCcc
Confidence 4678999999999999975321 222222222224566544 33 358899988843 33442 23333
Q ss_pred ccccEEEEE-CCcEEEEEecC----CC--------------CcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEE
Q 002749 153 RYGHVMDLV-SQRYLVSVSGN----DG--------------KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASA 213 (885)
Q Consensus 153 R~~ht~~~~-~~~~lyv~GG~----~~--------------~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~ 213 (885)
-.+....+. .++..+ +|=. +. ......+...|+.++ +...+-.. .....|.-..
T Consensus 124 ~~g~gt~v~n~d~t~~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG--~~~~v~~~----~~wlgH~~fs 196 (386)
T PF14583_consen 124 WKGYGTWVANSDCTKL-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG--ERKVVFED----TDWLGHVQFS 196 (386)
T ss_dssp EEEEEEEEE-TTSSEE-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEE----SS-EEEEEEE
T ss_pred cccccceeeCCCccEE-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC--ceeEEEec----CccccCcccC
Confidence 333222222 222232 2211 00 123466888899988 66666443 3445666666
Q ss_pred ecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEE
Q 002749 214 RSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVL 293 (885)
Q Consensus 214 ~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~y 293 (885)
-.+..+++|.-...-...-.-+|..+....+. .++....+.-..+|-.-..+|..+.+-++..++. ...+..|
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~---~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~----~~~i~~~ 269 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV---KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQ----DFWIAGY 269 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---TTEEEEEEEE-TTSS-EEEEEEETTT------EEEEEE
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcc---eeeecCCCCcccccccccCCCCEEEEEeecCCCC----ceEEEee
Confidence 56666666643323323344799999776632 3333333455666666555554333323322221 2347889
Q ss_pred ECCCCcEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEeCCEEEEEcCCC
Q 002749 294 DTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK 347 (885)
Q Consensus 294 D~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyV~GG~~ 347 (885)
|+++.+=+.+..+ +++.|=....+++|+|-=|.+
T Consensus 270 d~~t~~~~~~~~~--------------------p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 270 DPDTGERRRLMEM--------------------PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -TTT--EEEEEEE---------------------SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCCCceEEEeC--------------------CceeeeEEcCCCCEEEecCCC
Confidence 9998754444433 667888888899999877765
No 160
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=86.88 E-value=0.6 Score=54.90 Aligned_cols=57 Identities=30% Similarity=0.346 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHcCCe----EEEEeccccc--cceE-EecCCeEEEE---eccccccCCCCCeEEEEEE
Q 002749 766 GPDRVSDFCKRNKLQ----LIIRAHECVM--DGFE-RFAQGQLITL---FSATNYCGTANNAGAILVV 823 (885)
Q Consensus 766 g~~~~~~fl~~~~l~----~iiR~H~~~~--~G~~-~~~~~~~itv---fSa~~y~~~~~n~ga~l~~ 823 (885)
.++..++.|+..||+ .||-||.+|. +|=. .-++||++.| ||.. |-.+.+=+|=-|+.
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~TGIAGYTLiy 573 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTTGIAGYTLIY 573 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccccCccceEEEe
Confidence 667888999999999 9999999996 5644 4589999999 7765 55554445544443
No 161
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=86.68 E-value=2.2 Score=38.31 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=32.4
Q ss_pred CchHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeee
Q 002749 527 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQL 579 (885)
Q Consensus 527 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~ 579 (885)
+..+++.+++.+-+.+ .|+...+..|+.++.++|+++|+++++
T Consensus 53 t~efv~~mie~FK~~K----------~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 53 TLEFVKAMIEWFKNQK----------KLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp -HHHHHHHHHHHHCT--------------HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred CHHHHHHHHHHHHhCC----------CccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 4467888888877553 478889999999999999999999985
No 162
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=86.15 E-value=26 Score=37.58 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=27.7
Q ss_pred eEEEEeccccccceEEec--CCeEEEEeccccccCCCCCeEEEEEE-cCcceEEeE
Q 002749 780 QLIIRAHECVMDGFERFA--QGQLITLFSATNYCGTANNAGAILVV-GRGLVVVPK 832 (885)
Q Consensus 780 ~~iiR~H~~~~~G~~~~~--~~~~itvfSa~~y~~~~~n~ga~l~~-~~~~~~~~~ 832 (885)
..++-|||.. -|.+.+. +++-+.+.|.|.|.. .|.++.| =+++.+.+.
T Consensus 205 hVyf~Gnq~~-f~t~~~~~~~~~~v~lv~vP~Fs~----t~~~vlvdl~tLe~~~v 255 (257)
T cd07387 205 HVYFAGNQPK-FGTKLVEGEEGQRVLLVCVPSFSK----TGTAVLVNLRTLECEPI 255 (257)
T ss_pred CEEEeCCCcc-eeeeEEEcCCCCeEEEEEeCCcCc----CCEEEEEECCcCcEEEE
Confidence 3455677765 4445443 366777888898864 3444444 345666543
No 163
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=84.37 E-value=1.9 Score=46.57 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCeEEEEecccc
Q 002749 767 PDRVSDFCKRNKLQLIIRAHECV 789 (885)
Q Consensus 767 ~~~~~~fl~~~~l~~iiR~H~~~ 789 (885)
...+.+++++.++++++-||.-.
T Consensus 190 ~~~l~~l~~~~~v~~vl~GH~H~ 212 (277)
T cd07378 190 VDRLLPLLKKYKVDAYLSGHDHN 212 (277)
T ss_pred HHHHHHHHHHcCCCEEEeCCccc
Confidence 46788899999999999999755
No 164
>PRK13684 Ycf48-like protein; Provisional
Probab=82.82 E-value=86 Score=35.04 Aligned_cols=175 Identities=15% Similarity=0.272 Sum_probs=83.4
Q ss_pred CCcEEEecCCCCCCcccCccEEEEEC-CEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEEC
Q 002749 84 TRKWTRIRPAGEPPSPRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVS 162 (885)
Q Consensus 84 t~~W~~l~~~g~~P~~R~~hsa~~~~-~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~ 162 (885)
-.+|+++...... +...+....++ +.+++.|.. ..+++-+-.. .+|+.+.. +..-.-+.+....
T Consensus 118 G~tW~~~~~~~~~--~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG--~tW~~~~~----~~~g~~~~i~~~~ 182 (334)
T PRK13684 118 GKNWTRIPLSEKL--PGSPYLITALGPGTAEMATNV-------GAIYRTTDGG--KNWEALVE----DAAGVVRNLRRSP 182 (334)
T ss_pred CCCCeEccCCcCC--CCCceEEEEECCCcceeeecc-------ceEEEECCCC--CCceeCcC----CCcceEEEEEECC
Confidence 3589988632111 22223344443 445555542 1133333223 35998832 2222344454455
Q ss_pred CcEEEEEecCCCCcccCcEEEE-ecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEE-c
Q 002749 163 QRYLVSVSGNDGKRVLSDAWAL-DTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLL-M 240 (885)
Q Consensus 163 ~~~lyv~GG~~~~~~~ndv~~~-d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d-~ 240 (885)
++.+++.|.. + .++.- |.... +|+.+... ..+...++....++.+++.|... ...+. .
T Consensus 183 ~g~~v~~g~~-G-----~i~~s~~~gg~--tW~~~~~~----~~~~l~~i~~~~~g~~~~vg~~G--------~~~~~s~ 242 (334)
T PRK13684 183 DGKYVAVSSR-G-----NFYSTWEPGQT--AWTPHQRN----SSRRLQSMGFQPDGNLWMLARGG--------QIRFNDP 242 (334)
T ss_pred CCeEEEEeCC-c-----eEEEEcCCCCC--eEEEeeCC----CcccceeeeEcCCCCEEEEecCC--------EEEEccC
Confidence 5555544433 2 23332 33434 79888543 44455566666777788876531 11221 2
Q ss_pred CCCCeeEEEeCCCCCCCccc-eeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccC
Q 002749 241 HRNGQWEWTLAPGVAPSPRY-QHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 305 (885)
Q Consensus 241 ~~~~~W~w~~~~~~~P~~R~-~hs~~~~-~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~ 305 (885)
.....|+-...+. ..... -+++++. ++.+|++|.. ..++.-...-.+|..+..
T Consensus 243 d~G~sW~~~~~~~--~~~~~~l~~v~~~~~~~~~~~G~~----------G~v~~S~d~G~tW~~~~~ 297 (334)
T PRK13684 243 DDLESWSKPIIPE--ITNGYGYLDLAYRTPGEIWAGGGN----------GTLLVSKDGGKTWEKDPV 297 (334)
T ss_pred CCCCccccccCCc--cccccceeeEEEcCCCCEEEEcCC----------CeEEEeCCCCCCCeECCc
Confidence 2223444322211 11122 2333343 5678888762 224444444568999764
No 165
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=82.81 E-value=67 Score=33.78 Aligned_cols=190 Identities=13% Similarity=0.071 Sum_probs=100.2
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecC--CC
Q 002749 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQG--QG 149 (885)
Q Consensus 74 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~--~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~--~~ 149 (885)
.+.++++|+.+..-+.+...+ ..+++.. ++.+|+....+ +.++|+.+.+ ++.+.... ..
T Consensus 21 ~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g~l~v~~~~~--------~~~~d~~~g~--~~~~~~~~~~~~ 83 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDGRLYVADSGG--------IAVVDPDTGK--VTVLADLPDGGV 83 (246)
T ss_dssp TTEEEEEETTTTEEEEEESSS-------EEEEEEECTTSEEEEEETTC--------EEEEETTTTE--EEEEEEEETTCS
T ss_pred CCEEEEEECCCCeEEEEecCC-------CceEEEEccCCEEEEEEcCc--------eEEEecCCCc--EEEEeeccCCCc
Confidence 578999999998777655332 3444444 67888876532 5677888854 77765431 11
Q ss_pred CCCccccEEEEECCcEEEEEecCCCC-ccc--CcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCC-EEEEEccC
Q 002749 150 PGPRYGHVMDLVSQRYLVSVSGNDGK-RVL--SDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDG-MFLLCGGR 225 (885)
Q Consensus 150 p~~R~~ht~~~~~~~~lyv~GG~~~~-~~~--ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g-~l~i~GG~ 225 (885)
+..+.. -+++-.++.+|+.--.... ... ..+|++++. . +...+... . ..-...+...++ .||+.--
T Consensus 84 ~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~--~~~~~~~~----~-~~pNGi~~s~dg~~lyv~ds- 153 (246)
T PF08450_consen 84 PFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G--KVTVVADG----L-GFPNGIAFSPDGKTLYVADS- 153 (246)
T ss_dssp CTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S--EEEEEEEE----E-SSEEEEEEETTSSEEEEEET-
T ss_pred ccCCCc-eEEEcCCCCEEEEecCCCccccccccceEEECCC-C--eEEEEecC----c-ccccceEECCcchheeeccc-
Confidence 333333 3334556678864332211 112 679999998 4 44444321 1 111234444555 5666322
Q ss_pred CCCCCcccceEEEEcCCCCe-eEEEeCCCCCCC-ccceeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEE
Q 002749 226 DASGAPLADAYGLLMHRNGQ-WEWTLAPGVAPS-PRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLD 302 (885)
Q Consensus 226 ~~~~~~l~dv~~~d~~~~~~-W~w~~~~~~~P~-~R~~hs~~~~-~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~ 302 (885)
..+.+|.|+....+. +.-.......+. ..+--++++- ++.|||..-. ...|++||++-..-..
T Consensus 154 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~---------~~~I~~~~p~G~~~~~ 219 (246)
T PF08450_consen 154 -----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG---------GGRIVVFDPDGKLLRE 219 (246)
T ss_dssp -----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---------TTEEEEEETTSCEEEE
T ss_pred -----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---------CCEEEEECCCccEEEE
Confidence 235589998865432 332222111111 1222344443 6889987320 2469999999555555
Q ss_pred cc
Q 002749 303 RN 304 (885)
Q Consensus 303 v~ 304 (885)
+.
T Consensus 220 i~ 221 (246)
T PF08450_consen 220 IE 221 (246)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 166
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=82.58 E-value=2 Score=47.08 Aligned_cols=66 Identities=26% Similarity=0.351 Sum_probs=40.7
Q ss_pred CeEEEecCCCCHHH--------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-h-----HHHHHHHHHHH
Q 002749 582 PVKVFGDLHGQFGD--------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-S-----LETITLLLALK 641 (885)
Q Consensus 582 ~i~vvGDiHG~~~~--------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-s-----~evl~ll~~lk 641 (885)
.|+.+.|+||++.. |..+++........ .-+|..||++...+. + ..++.+|-++.
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g 76 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPN-----SLFVSAGDLIGASPFESALLQDEPTIEALNAMG 76 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCC-----eEEEeCCcccccccchhhcccCCcHHHHHHhhC
Confidence 47889999998653 55556554322111 156779999976654 2 24455555553
Q ss_pred hcCCCCEEEeccCCcc
Q 002749 642 IEYPENVHLIRGNHEA 657 (885)
Q Consensus 642 ~~~p~~v~llrGNHE~ 657 (885)
. . .+..||||.
T Consensus 77 ~----D-a~t~GNHef 87 (288)
T cd07412 77 V----D-ASAVGNHEF 87 (288)
T ss_pred C----e-eeeeccccc
Confidence 2 2 355699996
No 167
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=82.03 E-value=2.7 Score=47.57 Aligned_cols=42 Identities=33% Similarity=0.426 Sum_probs=31.8
Q ss_pred eEEEeccccCCCCC--hHHHHHHHHHHHhcCCC----CEEEeccCCcc
Q 002749 616 DYLFLGDYVDRGQH--SLETITLLLALKIEYPE----NVHLIRGNHEA 657 (885)
Q Consensus 616 ~~vfLGDyVDRG~~--s~evl~ll~~lk~~~p~----~v~llrGNHE~ 657 (885)
-++||||++|-|.. .-|--....++|..|+. .++.+.||||-
T Consensus 96 vvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 96 VVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred EEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 57889999998874 34555666666666664 68899999997
No 168
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=81.92 E-value=2.5 Score=45.41 Aligned_cols=65 Identities=22% Similarity=0.205 Sum_probs=38.0
Q ss_pred CeEEEecCCCCHH----------HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-----HHHHHHHHHHHhcCCC
Q 002749 582 PVKVFGDLHGQFG----------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPE 646 (885)
Q Consensus 582 ~i~vvGDiHG~~~----------~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~p~ 646 (885)
.|..+.|+||++. .|..+++...-.+. .-++..||+++..+.+ ..++..|-++. -
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~------~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~ 71 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDN------DLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----Y 71 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCC------EEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----C
Confidence 4778999999854 35555555432211 2567799999876533 22333333332 2
Q ss_pred CEEEeccCCcc
Q 002749 647 NVHLIRGNHEA 657 (885)
Q Consensus 647 ~v~llrGNHE~ 657 (885)
.+ +..||||.
T Consensus 72 d~-~~~GNHef 81 (257)
T cd07408 72 DA-VTPGNHEF 81 (257)
T ss_pred cE-Eccccccc
Confidence 33 45699995
No 169
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=80.78 E-value=1e+02 Score=34.69 Aligned_cols=196 Identities=18% Similarity=0.274 Sum_probs=101.9
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCC
Q 002749 75 NSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 75 ~dv~~yd~~t~~--W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~ 152 (885)
..++.+|+.+.+ |+...... ...........+++||+....+ .+|+||..+.+..|..-... . .
T Consensus 78 G~i~A~d~~~g~~~W~~~~~~~---~~~~~~~~~~~~G~i~~g~~~g-------~~y~ld~~~G~~~W~~~~~~---~-~ 143 (370)
T COG1520 78 GNIFALNPDTGLVKWSYPLLGA---VAQLSGPILGSDGKIYVGSWDG-------KLYALDASTGTLVWSRNVGG---S-P 143 (370)
T ss_pred CcEEEEeCCCCcEEecccCcCc---ceeccCceEEeCCeEEEecccc-------eEEEEECCCCcEEEEEecCC---C-e
Confidence 478999999876 97654320 0111122222267877755432 69999998777889988432 1 3
Q ss_pred ccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcc
Q 002749 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPL 232 (885)
Q Consensus 153 R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l 232 (885)
+..-.. +..+..+|+.- ..+.++++|..+....|..-...+ . ..+...+.. ..++.+|+...- . .
T Consensus 144 ~~~~~~-v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~-~~~~~vy~~~~~----~-~ 208 (370)
T COG1520 144 YYASPP-VVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAP-L-SLSIYGSPA-IASGTVYVGSDG----Y-D 208 (370)
T ss_pred EEecCc-EEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCc-c-ccccccCce-eecceEEEecCC----C-c
Confidence 333333 44443555332 124689999998888898554332 1 222222222 567777764321 1 1
Q ss_pred cceEEEEcCCCCeeEEEeCCCCCCCccce--eEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCC--cEEEccC
Q 002749 233 ADAYGLLMHRNGQWEWTLAPGVAPSPRYQ--HAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLDRNG 305 (885)
Q Consensus 233 ~dv~~~d~~~~~~W~w~~~~~~~P~~R~~--hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~--~W~~v~~ 305 (885)
..++.++... |.-.|..-.... ..+.. -...+.++.+|+-||...... ...++++|..+. .|+.-..
T Consensus 209 ~~~~a~~~~~-G~~~w~~~~~~~-~~~~~~~~~~~~~~~~v~v~~~~~~~~~----~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 209 GILYALNAED-GTLKWSQKVSQT-IGRTAISTTPAVDGGPVYVDGGVYAGSY----GGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred ceEEEEEccC-CcEeeeeeeecc-cCcccccccccccCceEEECCcEEEEec----CCeEEEEEcCCCceEEEEecc
Confidence 2577777753 455666321110 11100 012233445555544211110 233778887765 5876554
No 170
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=80.65 E-value=49 Score=37.79 Aligned_cols=181 Identities=15% Similarity=0.188 Sum_probs=90.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCc
Q 002749 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~ 124 (885)
.-.|++.+|..+. -.+|..|=.+|. .+..+.---.|-.....+..|...++.+|.
T Consensus 224 ~~plllvaG~d~~-----------------lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r------ 278 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT-----------------LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR------ 278 (514)
T ss_pred CCceEEEecCCCc-----------------EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc------
Confidence 4468888887643 335555555554 333221100222222222234447887875
Q ss_pred cCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCC
Q 002749 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~ 204 (885)
..-+|.||+.+.+ -.++......+ .+.-+.--+.....++++-|++|. +..+-..|+ .|.. +. ...
T Consensus 279 rky~ysyDle~ak--~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G~-----I~lLhakT~--eli~--s~--Kie 344 (514)
T KOG2055|consen 279 RKYLYSYDLETAK--VTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNGH-----IHLLHAKTK--ELIT--SF--KIE 344 (514)
T ss_pred ceEEEEeeccccc--cccccCCCCcc-cchhheeEecCCCCeEEEcccCce-----EEeehhhhh--hhhh--ee--eec
Confidence 2338999998844 55663222222 222333323334457778887663 566666666 4421 11 012
Q ss_pred CcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCC-eeEEEeCCCCCCCccceeEEEE-ECCEEEEEcc
Q 002749 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNG-QWEWTLAPGVAPSPRYQHAAVF-VGARLHVTGG 276 (885)
Q Consensus 205 ~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~-~W~w~~~~~~~P~~R~~hs~~~-~~~~l~V~GG 276 (885)
.+...........+|++.||. ..+|.++...+. .-+|+.-.+. ++-+.|. .++..+..|-
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~-------GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGT-------GEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCISLNGSYLATGS 406 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCC-------ceEEEEecCCcceEEEEeecCcc-----ceeeeeecCCCceEEecc
Confidence 222222233344578888773 468888877652 1233333222 3333332 3666555654
No 171
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=78.51 E-value=4.2 Score=43.83 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=20.7
Q ss_pred EEEeccccCCCCChH-----HHHHHHHHHHhcCCCCEEEeccCCcc
Q 002749 617 YLFLGDYVDRGQHSL-----ETITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 617 ~vfLGDyVDRG~~s~-----evl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
+|..||+++..+.+. .++.+|-++ +--.+. ||||.
T Consensus 55 ~l~~GD~~~gs~~~~~~~g~~~~~~l~~~-----g~da~~-GNHef 94 (264)
T cd07411 55 LLDGGDTWQGSGEALYTRGQAMVDALNAL-----GVDAMV-GHWEF 94 (264)
T ss_pred EEeCCCccCCChHHhhcCChhHHHHHHhh-----CCeEEe-ccccc
Confidence 456999998775432 334444443 223344 99996
No 172
>PRK05137 tolB translocation protein TolB; Provisional
Probab=78.37 E-value=1.4e+02 Score=34.62 Aligned_cols=148 Identities=18% Similarity=0.153 Sum_probs=69.6
Q ss_pred CcEEEEEecCCcceEEEEeecCCCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCC
Q 002749 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~ 204 (885)
..+|++|+.+.. ...+. ..+..-. ..... ++..+++....++ ..++|.+|+.+. ....+....
T Consensus 226 ~~i~~~dl~~g~--~~~l~---~~~g~~~--~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~Lt~~~---- 289 (435)
T PRK05137 226 PRVYLLDLETGQ--RELVG---NFPGMTF--APRFSPDGRKVVMSLSQGG---NTDIYTMDLRSG--TTTRLTDSP---- 289 (435)
T ss_pred CEEEEEECCCCc--EEEee---cCCCccc--CcEECCCCCEEEEEEecCC---CceEEEEECCCC--ceEEccCCC----
Confidence 579999998754 55552 2222111 12222 2334544433333 357999999887 556654321
Q ss_pred CcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCc
Q 002749 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (885)
Q Consensus 205 ~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~ 284 (885)
. .........++..++|... ..+ ..++|.++.... ..+ .+... ..++......-+++.+++..... +
T Consensus 290 ~-~~~~~~~spDG~~i~f~s~-~~g--~~~Iy~~d~~g~-~~~--~lt~~--~~~~~~~~~SpdG~~ia~~~~~~-~--- 356 (435)
T PRK05137 290 A-IDTSPSYSPDGSQIVFESD-RSG--SPQLYVMNADGS-NPR--RISFG--GGRYSTPVWSPRGDLIAFTKQGG-G--- 356 (435)
T ss_pred C-ccCceeEcCCCCEEEEEEC-CCC--CCeEEEEECCCC-CeE--EeecC--CCcccCeEECCCCCEEEEEEcCC-C---
Confidence 1 1112233455544444321 111 246888886543 222 22111 11222211122444444433211 1
Q ss_pred cCCCcEEEEECCCCcEEEcc
Q 002749 285 EGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 285 ~~~~~v~~yD~~t~~W~~v~ 304 (885)
...++++|+.+...+.+.
T Consensus 357 --~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 357 --QFSIGVMKPDGSGERILT 374 (435)
T ss_pred --ceEEEEEECCCCceEecc
Confidence 246899998877666554
No 173
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=77.11 E-value=1.7e+02 Score=35.00 Aligned_cols=123 Identities=18% Similarity=0.190 Sum_probs=71.2
Q ss_pred cCcEEEEECCCCc--EEEecCCCCCCc-ccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCC-
Q 002749 74 TNSVHLYDVLTRK--WTRIRPAGEPPS-PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQG- 149 (885)
Q Consensus 74 ~~dv~~yd~~t~~--W~~l~~~g~~P~-~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~- 149 (885)
...++++|..+++ |+.-.. .... .....+-++.++.||+..... .......++.||..+.+..|..-...+..
T Consensus 129 dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~ 205 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGG-EFGVRGYVTAYDAKTGKLVWRRYTVPGDMG 205 (527)
T ss_pred CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeeccc-ccCCCcEEEEEECCCCceeEeccCcCCCcc
Confidence 3569999998875 875321 1111 112234455688887754321 11234569999999988788765332110
Q ss_pred ------------C------CCcccc------EEEEEC--CcEEEEEecC----CC------CcccCcEEEEecCCCCeeE
Q 002749 150 ------------P------GPRYGH------VMDLVS--QRYLVSVSGN----DG------KRVLSDAWALDTAQKPYVW 193 (885)
Q Consensus 150 ------------p------~~R~~h------t~~~~~--~~~lyv~GG~----~~------~~~~ndv~~~d~~t~~~~W 193 (885)
+ ...+.+ ....++ .+.+|+--|+ ++ +.+.+.+..+|++|..++|
T Consensus 206 ~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W 285 (527)
T TIGR03075 206 YLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKW 285 (527)
T ss_pred cccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEE
Confidence 0 001111 111333 4478877776 22 2356789999999999999
Q ss_pred EEcCCC
Q 002749 194 QRLNPE 199 (885)
Q Consensus 194 ~~i~~~ 199 (885)
......
T Consensus 286 ~~Q~~~ 291 (527)
T TIGR03075 286 HYQTTP 291 (527)
T ss_pred eeeCCC
Confidence 887644
No 174
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=76.50 E-value=1.5e+02 Score=34.07 Aligned_cols=179 Identities=18% Similarity=0.202 Sum_probs=86.9
Q ss_pred CCcEEEecCCCCCCcccCccEEEEEC-CEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecC-CCCC----------
Q 002749 84 TRKWTRIRPAGEPPSPRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQG-QGPG---------- 151 (885)
Q Consensus 84 t~~W~~l~~~g~~P~~R~~hsa~~~~-~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~-~~p~---------- 151 (885)
-.+|+++......|.. .+....++ +.+++.|..+ .+++-+-.. .+|+.+.... ..+.
T Consensus 165 G~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~G-------~v~~S~D~G--~tW~~~~~~t~~~~l~~~~~s~~~g 233 (398)
T PLN00033 165 GETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDEG-------AIYVTSNAG--RNWKAAVEETVSATLNRTVSSGISG 233 (398)
T ss_pred CCCceECccccCCCCC--ceEEEEECCCceEEEeccc-------eEEEECCCC--CCceEcccccccccccccccccccc
Confidence 4689988754333333 23344443 4577777432 144443333 3488762110 0011
Q ss_pred ----CccccEEEEECCcEEEEEecCCCCcccCcEEE-EecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCC
Q 002749 152 ----PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWA-LDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRD 226 (885)
Q Consensus 152 ----~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~-~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~ 226 (885)
.-..+++....++.++++|-. ..+++ .|.... .|+.+... .++...++....++.+++.|..
T Consensus 234 ~~~y~Gsf~~v~~~~dG~~~~vg~~------G~~~~s~d~G~~--~W~~~~~~----~~~~l~~v~~~~dg~l~l~g~~- 300 (398)
T PLN00033 234 ASYYTGTFSTVNRSPDGDYVAVSSR------GNFYLTWEPGQP--YWQPHNRA----SARRIQNMGWRADGGLWLLTRG- 300 (398)
T ss_pred cceeccceeeEEEcCCCCEEEEECC------ccEEEecCCCCc--ceEEecCC----CccceeeeeEcCCCCEEEEeCC-
Confidence 111223333344455555432 22443 333332 48888653 4444445555677888887653
Q ss_pred CCCCcccceEEEEcCCCCee---EEEeCCCCCCCccce-eEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCCcEE
Q 002749 227 ASGAPLADAYGLLMHRNGQW---EWTLAPGVAPSPRYQ-HAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWL 301 (885)
Q Consensus 227 ~~~~~l~dv~~~d~~~~~~W---~w~~~~~~~P~~R~~-hs~~~~-~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~ 301 (885)
..++..+.. ...| +|....-. ..++. .++.+. ++.+++.|.. .-++.-...-++|.
T Consensus 301 ------G~l~~S~d~-G~~~~~~~f~~~~~~--~~~~~l~~v~~~~d~~~~a~G~~----------G~v~~s~D~G~tW~ 361 (398)
T PLN00033 301 ------GGLYVSKGT-GLTEEDFDFEEADIK--SRGFGILDVGYRSKKEAWAAGGS----------GILLRSTDGGKSWK 361 (398)
T ss_pred ------ceEEEecCC-CCcccccceeecccC--CCCcceEEEEEcCCCcEEEEECC----------CcEEEeCCCCccee
Confidence 223332222 2234 45554321 22332 333344 5688888862 23556666667999
Q ss_pred EccC
Q 002749 302 DRNG 305 (885)
Q Consensus 302 ~v~~ 305 (885)
.+..
T Consensus 362 ~~~~ 365 (398)
T PLN00033 362 RDKG 365 (398)
T ss_pred Eccc
Confidence 9764
No 175
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=75.01 E-value=1.6e+02 Score=33.57 Aligned_cols=147 Identities=19% Similarity=0.191 Sum_probs=72.8
Q ss_pred CcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECC-cEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCC
Q 002749 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~-~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~ 204 (885)
..++++|+.+.. ...+.. .+.... +.....+ +.+++....++ ..++|.+|+.+. ....+.......
T Consensus 214 ~~i~v~d~~~g~--~~~~~~---~~~~~~--~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~--~~~~l~~~~~~~- 280 (417)
T TIGR02800 214 PEIYVQDLATGQ--REKVAS---FPGMNG--APAFSPDGSKLAVSLSKDG---NPDIYVMDLDGK--QLTRLTNGPGID- 280 (417)
T ss_pred cEEEEEECCCCC--EEEeec---CCCCcc--ceEECCCCCEEEEEECCCC---CccEEEEECCCC--CEEECCCCCCCC-
Confidence 579999998754 344421 111111 2223333 34554433322 257999999987 566664431111
Q ss_pred CcccceEEEecCC-EEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEE-ECCEEEEEcccCCCCC
Q 002749 205 ARMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVF-VGARLHVTGGALRGGR 282 (885)
Q Consensus 205 ~r~~hsa~~~~~g-~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~-~~~~l~V~GG~~~~~~ 282 (885)
.......++ .|++.....+ ...+|.++.... .++.....+ .+....++ -+++.+++..... +
T Consensus 281 ----~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~-~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~-~- 344 (417)
T TIGR02800 281 ----TEPSWSPDGKSIAFTSDRGG----SPQIYMMDADGG-EVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG-G- 344 (417)
T ss_pred ----CCEEECCCCCEEEEEECCCC----CceEEEEECCCC-CEEEeecCC-----CCccCeEECCCCCEEEEEEccC-C-
Confidence 111223455 4444433222 236888887654 333222211 12222222 2566666655322 1
Q ss_pred CccCCCcEEEEECCCCcEEEccC
Q 002749 283 AIEGEAAVAVLDTAAGVWLDRNG 305 (885)
Q Consensus 283 ~~~~~~~v~~yD~~t~~W~~v~~ 305 (885)
...++++|+.+..++.+..
T Consensus 345 ----~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 345 ----GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred ----ceEEEEEeCCCCCeEEccC
Confidence 3469999999977766653
No 176
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=73.42 E-value=1.1e+02 Score=31.12 Aligned_cols=155 Identities=11% Similarity=0.021 Sum_probs=76.2
Q ss_pred EEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeec-CCCCCCccccEEEEEC-CcEEEEEecCCCCcccCcE
Q 002749 104 AAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ-GQGPGPRYGHVMDLVS-QRYLVSVSGNDGKRVLSDA 181 (885)
Q Consensus 104 sa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~-~~~p~~R~~ht~~~~~-~~~lyv~GG~~~~~~~ndv 181 (885)
+++...+.+|+|-|. .+|+++.......-..+... +..|. ... ++.... ++.+|+|-|. ..
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~-~ID-Aa~~~~~~~~~yfFkg~-------~y 73 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS-PVD-AAFERPDTGKIYFFKGD-------KY 73 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC-Ccc-EEEEECCCCEEEEECCC-------EE
Confidence 445556889998663 27777764211111122110 11221 122 233333 3688888774 57
Q ss_pred EEEecCCCCeeEE---EcCCCCCCCCCcccceEEEec-CCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeC-----C
Q 002749 182 WALDTAQKPYVWQ---RLNPEGDRPSARMYATASARS-DGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLA-----P 252 (885)
Q Consensus 182 ~~~d~~t~~~~W~---~i~~~g~~P~~r~~hsa~~~~-~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~-----~ 252 (885)
|+|+..+. .+. .+...+-++.+..-.++.... ++.+|+|.| +..|+|+.... +.... .
T Consensus 74 w~~~~~~~--~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~---~v~~~yP~~i~ 140 (194)
T cd00094 74 WVYTGKNL--EPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQ---KMDPGYPKLIE 140 (194)
T ss_pred EEEcCccc--ccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCc---cccCCCCcchh
Confidence 88886642 221 111112222112223444444 789999987 34677775433 11100 0
Q ss_pred -CCCCCccceeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCCc
Q 002749 253 -GVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (885)
Q Consensus 253 -~~~P~~R~~hs~~~~-~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (885)
.-+..+..-.++... ++++|+|-| +.+|.||..+.+
T Consensus 141 ~~w~g~p~~idaa~~~~~~~~yfF~g-----------~~y~~~d~~~~~ 178 (194)
T cd00094 141 TDFPGVPDKVDAAFRWLDGYYYFFKG-----------DQYWRFDPRSKE 178 (194)
T ss_pred hcCCCcCCCcceeEEeCCCcEEEEEC-----------CEEEEEeCccce
Confidence 000112111223223 489999977 458999998776
No 177
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=72.87 E-value=1.6e+02 Score=32.82 Aligned_cols=199 Identities=14% Similarity=0.097 Sum_probs=92.4
Q ss_pred EEEEECCCCcEEEecCCCCCCcccCccE-EEE--ECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCc
Q 002749 77 VHLYDVLTRKWTRIRPAGEPPSPRAAHA-AAA--VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 77 v~~yd~~t~~W~~l~~~g~~P~~R~~hs-a~~--~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R 153 (885)
++.||..+.+++.+.... .-...+ ++. -++.||+..... .....+..|++..++.+...+..... ....
T Consensus 17 ~~~~d~~~g~l~~~~~~~----~~~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~ 88 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVA----EGENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVPS-GGSS 88 (345)
T ss_dssp EEEEETTTTEEEEEEEEE----ESSSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEEE-SSSC
T ss_pred EEEEcCCCCCceEeeeec----CCCCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeecc-CCCC
Confidence 444555889998876421 111122 222 256888876543 23445778877765344666532111 1222
Q ss_pred cccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEc---------CCCCCCCCCcccceEEEecCC-EEEEEc
Q 002749 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL---------NPEGDRPSARMYATASARSDG-MFLLCG 223 (885)
Q Consensus 154 ~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i---------~~~g~~P~~r~~hsa~~~~~g-~l~i~G 223 (885)
-.|.+..-+++++|+.- +. -+.+.+|++..+. .-... .+..........|.+....++ .+|+.
T Consensus 89 p~~i~~~~~g~~l~van-y~----~g~v~v~~l~~~g-~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~- 161 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVAN-YG----GGSVSVFPLDDDG-SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP- 161 (345)
T ss_dssp EEEEEECTTSSEEEEEE-TT----TTEEEEEEECTTS-EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-
T ss_pred cEEEEEecCCCEEEEEE-cc----CCeEEEEEccCCc-ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-
Confidence 22332222444666532 22 2357777776631 11111 011111123335777777665 45553
Q ss_pred cCCCCCCcccceEEEEcCCCC-eeEE---EeCCCCCCCccceeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECC--
Q 002749 224 GRDASGAPLADAYGLLMHRNG-QWEW---TLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTA-- 296 (885)
Q Consensus 224 G~~~~~~~l~dv~~~d~~~~~-~W~w---~~~~~~~P~~R~~hs~~~~-~~~l~V~GG~~~~~~~~~~~~~v~~yD~~-- 296 (885)
.. -.+.++.|+..... ..+. ..++.- ..|| |.+..- +..+||..-. .+.+.+|+..
T Consensus 162 dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G-~GPR--h~~f~pdg~~~Yv~~e~---------s~~v~v~~~~~~ 224 (345)
T PF10282_consen 162 DL-----GADRVYVYDIDDDTGKLTPVDSIKVPPG-SGPR--HLAFSPDGKYAYVVNEL---------SNTVSVFDYDPS 224 (345)
T ss_dssp ET-----TTTEEEEEEE-TTS-TEEEEEEEECSTT-SSEE--EEEE-TTSSEEEEEETT---------TTEEEEEEEETT
T ss_pred ec-----CCCEEEEEEEeCCCceEEEeeccccccC-CCCc--EEEEcCCcCEEEEecCC---------CCcEEEEeeccc
Confidence 22 14567777776542 2322 122111 1233 322222 4679998653 2345555444
Q ss_pred CCcEEEccCCc
Q 002749 297 AGVWLDRNGLV 307 (885)
Q Consensus 297 t~~W~~v~~~~ 307 (885)
+..|+.+...+
T Consensus 225 ~g~~~~~~~~~ 235 (345)
T PF10282_consen 225 DGSLTEIQTIS 235 (345)
T ss_dssp TTEEEEEEEEE
T ss_pred CCceeEEEEee
Confidence 77777665543
No 178
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=72.22 E-value=7 Score=38.90 Aligned_cols=40 Identities=30% Similarity=0.330 Sum_probs=30.2
Q ss_pred eEEEecccc--CCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccc
Q 002749 616 DYLFLGDYV--DRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 616 ~~vfLGDyV--DRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
.++.-||+- -|=+...+-+.+|-+| |+.=+++|||||...
T Consensus 46 iVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw 87 (230)
T COG1768 46 IVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWW 87 (230)
T ss_pred EEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCcccc
Confidence 466679985 4556666667777665 788999999999865
No 179
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=71.87 E-value=7.4 Score=42.57 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=29.2
Q ss_pred eEEEeccccCCCCChH--H------HHHHHHHHHhcCCC-CEEEeccCCcccch
Q 002749 616 DYLFLGDYVDRGQHSL--E------TITLLLALKIEYPE-NVHLIRGNHEAADI 660 (885)
Q Consensus 616 ~~vfLGDyVDRG~~s~--e------vl~ll~~lk~~~p~-~v~llrGNHE~~~~ 660 (885)
-+|+.||+|+.+.... + .-.+...++..+|. .|+.+.||||....
T Consensus 71 fii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~ 124 (296)
T cd00842 71 FILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPV 124 (296)
T ss_pred EEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcc
Confidence 5888999998775431 1 12233334544443 69999999998654
No 180
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=71.25 E-value=1.7e+02 Score=32.23 Aligned_cols=143 Identities=10% Similarity=0.019 Sum_probs=65.3
Q ss_pred CcEEEEECCC-CcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCC
Q 002749 75 NSVHLYDVLT-RKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (885)
Q Consensus 75 ~dv~~yd~~t-~~W~~l~~~g~~P~~R~~hsa~~~--~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~ 151 (885)
+.+.+||+.+ .+++.+.... .....+.++.. ++.+|+.+. . ...+..|++..+ .++..+... +.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~spd~~~lyv~~~-~-----~~~i~~~~~~~~-g~l~~~~~~---~~ 78 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVD---VPGQVQPMVISPDKRHLYVGVR-P-----EFRVLSYRIADD-GALTFAAES---PL 78 (330)
T ss_pred CCEEEEEECCCCceeeeeEEe---cCCCCccEEECCCCCEEEEEEC-C-----CCcEEEEEECCC-CceEEeeee---cC
Confidence 5678888864 5676655332 11122233332 346666543 1 245778888632 235444221 11
Q ss_pred CccccEEEEE-CCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCC-EEEEEccCCCCC
Q 002749 152 PRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDG-MFLLCGGRDASG 229 (885)
Q Consensus 152 ~R~~ht~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g-~l~i~GG~~~~~ 229 (885)
+..-+.++.. +++.+|+..-. -+.+.+|++.++......+... +.....|.+....++ .+|+..-
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~---~~~~~~~~~~~~p~g~~l~v~~~----- 145 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYN-----ANCVSVSPLDKDGIPVAPIQII---EGLEGCHSANIDPDNRTLWVPCL----- 145 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcC-----CCeEEEEEECCCCCCCCceeec---cCCCcccEeEeCCCCCEEEEeeC-----
Confidence 1111223333 34466655322 2457778776432111111111 112223555555565 4555332
Q ss_pred CcccceEEEEcCCCC
Q 002749 230 APLADAYGLLMHRNG 244 (885)
Q Consensus 230 ~~l~dv~~~d~~~~~ 244 (885)
..+.++.|+..+++
T Consensus 146 -~~~~v~v~d~~~~g 159 (330)
T PRK11028 146 -KEDRIRLFTLSDDG 159 (330)
T ss_pred -CCCEEEEEEECCCC
Confidence 12456777766543
No 181
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=70.82 E-value=1.5e+02 Score=31.37 Aligned_cols=121 Identities=18% Similarity=0.281 Sum_probs=59.0
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-C-CEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCC
Q 002749 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-G-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 75 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~-~-~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~ 152 (885)
+.+++||+.+++-...-.... .+ ++++.. + ..+|+.++. .+.+++||+.+.+ .......+ ..+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~--~~---~~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~--~~~~~~~~--~~~ 75 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQ--RP---RGITLSKDGKLLYVCASD------SDTIQVIDLATGE--VIGTLPSG--PDP 75 (300)
T ss_pred CEEEEEECCCCceEEEEECCC--CC---CceEECCCCCEEEEEECC------CCeEEEEECCCCc--EEEeccCC--CCc
Confidence 578889988776433322211 11 222222 3 456776652 3458899998743 33321111 111
Q ss_pred ccccEEEEEC-CcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccC
Q 002749 153 RYGHVMDLVS-QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGR 225 (885)
Q Consensus 153 R~~ht~~~~~-~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~ 225 (885)
..++... ++.+|+.++.+ +.+.+||+.+.. .-..+... ...+++....++.+++.+..
T Consensus 76 ---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~-~~~~~~~~------~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 76 ---ELFALHPNGKILYIANEDD-----NLVTVIDIETRK-VLAEIPVG------VEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred ---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCe-EEeEeeCC------CCcceEEECCCCCEEEEEec
Confidence 2233333 33566554433 358899998751 11122111 11134445567767766653
No 182
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=70.81 E-value=52 Score=37.55 Aligned_cols=107 Identities=14% Similarity=0.139 Sum_probs=63.4
Q ss_pred CcE-EEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcC
Q 002749 163 QRY-LVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMH 241 (885)
Q Consensus 163 ~~~-lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~ 241 (885)
++. .++++|... -++.||+++. +-+++.++...+ .+..+..-+..++.++++-|..+ -++.+...
T Consensus 268 ~G~~~i~~s~rrk-----y~ysyDle~a--k~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G------~I~lLhak 333 (514)
T KOG2055|consen 268 NGHSVIFTSGRRK-----YLYSYDLETA--KVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNG------HIHLLHAK 333 (514)
T ss_pred CCceEEEecccce-----EEEEeecccc--ccccccCCCCcc-cchhheeEecCCCCeEEEcccCc------eEEeehhh
Confidence 444 666776532 3789999998 888887665544 44455555556666777777533 35555555
Q ss_pred CCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCC
Q 002749 242 RNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAG 298 (885)
Q Consensus 242 ~~~~W~w~~~~~~~P~~R~~hs~~~~-~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~ 298 (885)
+. +|+..-.+ .++..-.+..- +.+|+++||+ ..||++|..++
T Consensus 334 T~---eli~s~Ki--eG~v~~~~fsSdsk~l~~~~~~----------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 334 TK---ELITSFKI--EGVVSDFTFSSDSKELLASGGT----------GEVYVWNLRQN 376 (514)
T ss_pred hh---hhhheeee--ccEEeeEEEecCCcEEEEEcCC----------ceEEEEecCCc
Confidence 44 44433222 22222222122 4568888883 46999999887
No 183
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=70.36 E-value=42 Score=31.66 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=53.7
Q ss_pred EEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCC-cccCcEEEE
Q 002749 106 AAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGK-RVLSDAWAL 184 (885)
Q Consensus 106 ~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~-~~~ndv~~~ 184 (885)
+++++.+|...-. ......-+.+||+.+.+ |..+..............++.+++ .|-++.-.... ...-++|++
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~--f~~i~~P~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~~~~~~iWvL 76 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEK--FRFIKLPEDPYSSDCSSTLIEYKG-KLALVSYNDQGEPDSIDIWVL 76 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCce--EEEEEeeeeeccccCccEEEEeCC-eEEEEEecCCCCcceEEEEEe
Confidence 4678888887765 33456778999999966 766633112344556667767765 55554443322 234578998
Q ss_pred e-cCCCCeeEEEcCC
Q 002749 185 D-TAQKPYVWQRLNP 198 (885)
Q Consensus 185 d-~~t~~~~W~~i~~ 198 (885)
+ ..+. .|.+...
T Consensus 77 eD~~k~--~Wsk~~~ 89 (129)
T PF08268_consen 77 EDYEKQ--EWSKKHI 89 (129)
T ss_pred eccccc--eEEEEEE
Confidence 4 5555 8987743
No 184
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=69.78 E-value=87 Score=29.47 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=48.3
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEE-ecCCcceEEEEee
Q 002749 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLD-LTNDKFKWHRVVV 145 (885)
Q Consensus 74 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D-~~~~~~~W~~v~~ 145 (885)
..-+.+||..+.+|+.+...............+.++++|-++.-........=++|+++ ..+ .+|.+...
T Consensus 19 ~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k--~~Wsk~~~ 89 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK--QEWSKKHI 89 (129)
T ss_pred CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc--ceEEEEEE
Confidence 57799999999999988753223355677788888998888765432223446788886 333 56887744
No 185
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=69.67 E-value=1.3e+02 Score=30.53 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=32.0
Q ss_pred CCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCC
Q 002749 109 GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQ 188 (885)
Q Consensus 109 ~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t 188 (885)
++..++.|+. ...+.+||..+..... .+ . .....-..+....++.+++.|+.+ +.+..||+.+
T Consensus 62 ~~~~l~~~~~------~~~i~i~~~~~~~~~~-~~-~----~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~ 124 (289)
T cd00200 62 DGTYLASGSS------DKTIRLWDLETGECVR-TL-T----GHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVET 124 (289)
T ss_pred CCCEEEEEcC------CCeEEEEEcCcccceE-EE-e----ccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCC
Confidence 3445566653 3458899987732111 11 0 111112223333344566666644 3588899875
Q ss_pred C
Q 002749 189 K 189 (885)
Q Consensus 189 ~ 189 (885)
.
T Consensus 125 ~ 125 (289)
T cd00200 125 G 125 (289)
T ss_pred c
Confidence 4
No 186
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=69.55 E-value=66 Score=36.51 Aligned_cols=185 Identities=18% Similarity=0.186 Sum_probs=99.2
Q ss_pred cccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCC
Q 002749 72 GVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (885)
Q Consensus 72 ~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~ 151 (885)
...|++|++|-.-+.--+++-.+ ..-.-+++-..++..|+.-=. ..+-+++.|+++.+ --++ .|.+-.
T Consensus 403 e~~N~vYilDe~lnvvGkltGl~---~gERIYAvRf~gdv~yiVTfr-----qtDPlfviDlsNPe--nPkv--lGeLKI 470 (603)
T COG4880 403 EPVNAVYILDENLNVVGKLTGLA---PGERIYAVRFVGDVLYIVTFR-----QTDPLFVIDLSNPE--NPKV--LGELKI 470 (603)
T ss_pred CccceeEEEcCCCcEEEEEeccC---CCceEEEEEEeCceEEEEEEe-----ccCceEEEEcCCCC--CCce--eEEEec
Confidence 36899999999988777776443 233345666678888886543 45669999998733 1112 244444
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCC--C-----e----eEEEcCCCCCCCCCcccceEEEecCCEEE
Q 002749 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK--P-----Y----VWQRLNPEGDRPSARMYATASARSDGMFL 220 (885)
Q Consensus 152 ~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~--~-----~----~W~~i~~~g~~P~~r~~hsa~~~~~g~l~ 220 (885)
|-++.=+.-++.+.++=+|-.++.-. +-.||++.- | | -|+ |.-+.+|+...-..-.++
T Consensus 471 PGfS~YLHpigen~~lGvG~~~g~vK---iSLFdiSdl~~PkEv~~y~l~~~ws--------pvf~dhHAFl~d~~~~if 539 (603)
T COG4880 471 PGFSEYLHPIGENRLLGVGAYQGGVK---ISLFDISDLAAPKEVSNYTLSNAWS--------PVFYDHHAFLYDPEAEIF 539 (603)
T ss_pred CCchhhccccCCCcEEEeecccCCce---EEEEeccCCCCchhhhheehhhhcc--------hhhhccceeecCCcccEE
Confidence 54444444556666665665554321 223443321 0 0 232 344445555543333344
Q ss_pred EEccCCCCCCcccceEEEEcCCCCeeEEEeC-CCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCc
Q 002749 221 LCGGRDASGAPLADAYGLLMHRNGQWEWTLA-PGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (885)
Q Consensus 221 i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~-~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (885)
..--.. -.-++.+.... +.++- ....+. -.+.++++.+|++|| +.+|.||- +.
T Consensus 540 FlPay~-----~gyif~iedg~----kl~k~~e~k~na----~RA~fi~dylY~vg~-----------~ev~~lde--ns 593 (603)
T COG4880 540 FLPAYL-----GGYIFFIEDGS----KLRKRAERKLNA----DRAFFIKDYLYLVGG-----------NEVWKLDE--NS 593 (603)
T ss_pred EecccC-----ccEEEEEecCc----eeeehhhhcccc----eeeEEecceEEEecc-----------ceeEEecc--ch
Confidence 332110 01133333221 11111 111112 235678999999999 46888876 56
Q ss_pred EEEccC
Q 002749 300 WLDRNG 305 (885)
Q Consensus 300 W~~v~~ 305 (885)
|..+..
T Consensus 594 we~Vge 599 (603)
T COG4880 594 WEVVGE 599 (603)
T ss_pred Hhhhhh
Confidence 777654
No 187
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=68.32 E-value=5.8 Score=44.80 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=34.3
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccch
Q 002749 616 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 616 ~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
.+-.+||+-||||++-.++.-|..+ ..+-+-.||||...+
T Consensus 193 hLHiVGDIyDRGP~pd~Imd~L~~y-----hsvDiQWGNHDilWm 232 (648)
T COG3855 193 HLHIVGDIYDRGPYPDKIMDTLINY-----HSVDIQWGNHDILWM 232 (648)
T ss_pred heeeecccccCCCCchHHHHHHhhc-----ccccccccCcceEEe
Confidence 5678999999999999999999887 478888999996543
No 188
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=67.81 E-value=7.7 Score=50.96 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=38.9
Q ss_pred CeEEEecCCCCHHHHH---HHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-----HHHHHHHHHHHhcCCCCEEEecc
Q 002749 582 PVKVFGDLHGQFGDLM---RLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRG 653 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~---~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~p~~v~llrG 653 (885)
.|+.+.|+||.+..+. .+++.......+ .-++..||+++..+.+ ..++.+|-++ +--.+..|
T Consensus 662 ~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~l-----g~d~~~~G 731 (1163)
T PRK09419 662 TILHTNDFHGHLDGAAKRVTKIKEVKEENPN-----TILVDAGDVYQGSLYSNLLKGLPVLKMMKEM-----GYDASTFG 731 (1163)
T ss_pred EEEEEeecccCCCCHHHHHHHHHHHHhhCCC-----eEEEecCCCCCCcchhhhcCChHHHHHHhCc-----CCCEEEec
Confidence 4889999999864443 344443211111 1233489999877644 2344444444 23356899
Q ss_pred CCcc
Q 002749 654 NHEA 657 (885)
Q Consensus 654 NHE~ 657 (885)
|||.
T Consensus 732 NHEf 735 (1163)
T PRK09419 732 NHEF 735 (1163)
T ss_pred cccc
Confidence 9996
No 189
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=67.04 E-value=2.2e+02 Score=32.03 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=78.8
Q ss_pred cCcEEEEECCCC--cEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCC
Q 002749 74 TNSVHLYDVLTR--KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (885)
Q Consensus 74 ~~dv~~yd~~t~--~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~ 151 (885)
.+.++++|..+. .|+.-.... . ..+...+.+.-++.+|+..- + . ...++.+|..+.+..|..-........
T Consensus 162 ~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~~~~~~vy~~~~-~---~-~~~~~a~~~~~G~~~w~~~~~~~~~~~ 234 (370)
T COG1520 162 DGHLYALNADTGTLKWTYETPAP-L-SLSIYGSPAIASGTVYVGSD-G---Y-DGILYALNAEDGTLKWSQKVSQTIGRT 234 (370)
T ss_pred CCeEEEEEccCCcEEEEEecCCc-c-ccccccCceeecceEEEecC-C---C-cceEEEEEccCCcEeeeeeeecccCcc
Confidence 467888888864 587543321 1 22333333344556665432 1 2 336999999888888985321111111
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCc
Q 002749 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 231 (885)
Q Consensus 152 ~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~ 231 (885)
... ....+..+.+|+-|+.........++++|..+....|+.-... .....+..-+.....+|.+|+........ .
T Consensus 235 ~~~--~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~-~~~~~~~~~~~~~~~dG~v~~~~~~~~~~-~ 310 (370)
T COG1520 235 AIS--TTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGG-SVQGSGLYTTPVAGADGKVYIGFTDNDGR-G 310 (370)
T ss_pred ccc--ccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEeccc-EeccCCeeEEeecCCCccEEEEEeccccc-c
Confidence 000 1122333344444432111122348999999988889876541 11122222233333577777764332211 3
Q ss_pred ccceEEEEc
Q 002749 232 LADAYGLLM 240 (885)
Q Consensus 232 l~dv~~~d~ 240 (885)
...++.++.
T Consensus 311 ~~~~~~~~~ 319 (370)
T COG1520 311 SGSLYALAD 319 (370)
T ss_pred ccceEEEec
Confidence 456677766
No 190
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.63 E-value=23 Score=34.29 Aligned_cols=101 Identities=28% Similarity=0.365 Sum_probs=66.8
Q ss_pred eEEEecCCC--CHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccch
Q 002749 583 VKVFGDLHG--QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 583 i~vvGDiHG--~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
+.++||+|= ...+|-.=|++.-.|..-. .++++|++. +-|++.+|..+. ..++++||--|..
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki~-----hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~-- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKIQ-----HILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN-- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCcee-----EEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc--
Confidence 578999985 3345555565555554321 689999975 779999988875 6899999977653
Q ss_pred hhhcCChHHHHHHhCCCCchhhhhhhhhhccCCceEEEE--c-CeEEEecCCCCCCCcCHHHhhcccCCccc
Q 002749 661 NALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI--E-KKIICMHGGIGRSIHSVEQIEKLERPITM 729 (885)
Q Consensus 661 ~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i--~-~~il~vHgGi~~~~~~~~~i~~~~rp~~~ 729 (885)
.+|.+ .-++ + -||=||||-.---..+.+.+.-+.|-+++
T Consensus 67 -----------~~yP~-------------------~kvvtvGqfkIG~chGhqViP~gd~~sL~~LaRqldv 108 (183)
T KOG3325|consen 67 -----------LKYPE-------------------NKVVTVGQFKIGLCHGHQVIPWGDPESLALLARQLDV 108 (183)
T ss_pred -----------ccCCc-------------------cceEEeccEEEEeecCcEeecCCCHHHHHHHHHhcCC
Confidence 23322 2222 2 37899999754334667777777776553
No 191
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=66.11 E-value=13 Score=40.39 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=16.5
Q ss_pred eCHHHHHHHHHHc-CCeEEEEecccc
Q 002749 765 FGPDRVSDFCKRN-KLQLIIRAHECV 789 (885)
Q Consensus 765 fg~~~~~~fl~~~-~l~~iiR~H~~~ 789 (885)
.|.+.-.++.++. ++++||=||+-+
T Consensus 192 ~G~~~d~~la~~~~giD~IiggH~H~ 217 (281)
T cd07409 192 SGYEVDKEIARKVPGVDVIVGGHSHT 217 (281)
T ss_pred cCchhHHHHHHcCCCCcEEEeCCcCc
Confidence 3444444566664 899999998655
No 192
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=64.39 E-value=2.6e+02 Score=31.80 Aligned_cols=141 Identities=15% Similarity=0.139 Sum_probs=72.6
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEEC-CEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCc
Q 002749 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 75 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~-~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R 153 (885)
..++++|+.++....+.... ..... ....-+ +.+++..... ...++|.+|+.++. ..++...... .
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~---~~~~~-~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~--~~~l~~~~~~---~ 280 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP---GMNGA-PAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQ--LTRLTNGPGI---D 280 (417)
T ss_pred cEEEEEECCCCCEEEeecCC---CCccc-eEECCCCCEEEEEECCC----CCccEEEEECCCCC--EEECCCCCCC---C
Confidence 57999999988777665322 11111 111223 4566543321 12579999998754 5555321111 1
Q ss_pred cccEEEEE-CCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcc
Q 002749 154 YGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPL 232 (885)
Q Consensus 154 ~~ht~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l 232 (885)
...... ++..+++.....+ ...+|.+|..+. .+..+...+ ..........++..+++..... ..
T Consensus 281 --~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~--~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~---~~ 345 (417)
T TIGR02800 281 --TEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGG--EVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG---GG 345 (417)
T ss_pred --CCEEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEeecCC-----CCccCeEECCCCCEEEEEEccC---Cc
Confidence 111122 3334443332222 247999999887 666665332 1122334445666666655433 23
Q ss_pred cceEEEEcCCC
Q 002749 233 ADAYGLLMHRN 243 (885)
Q Consensus 233 ~dv~~~d~~~~ 243 (885)
..++.++....
T Consensus 346 ~~i~~~d~~~~ 356 (417)
T TIGR02800 346 FNIAVMDLDGG 356 (417)
T ss_pred eEEEEEeCCCC
Confidence 46788887653
No 193
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=64.08 E-value=1.8e+02 Score=30.40 Aligned_cols=146 Identities=14% Similarity=0.073 Sum_probs=73.5
Q ss_pred EEEEECCCCcEEEecCC--CCCCcccCccEEEEECCEEEEEcCcCCCCCcc--CcEEEEEecCCcceEEEEeecCCCCCC
Q 002749 77 VHLYDVLTRKWTRIRPA--GEPPSPRAAHAAAAVGTMVVFQGGIGPAGHST--DDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 77 v~~yd~~t~~W~~l~~~--g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~--~dl~~~D~~~~~~~W~~v~~~~~~p~~ 152 (885)
+.++|+.+++++.+... +..+..|..-.++.-++.+|+.--........ ..+|+++.. .+ ...+... -
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~-----~ 133 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADG-----L 133 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEE-----E
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecC-----c
Confidence 45669999999988654 22234444445555567877753211111111 569999998 33 3333211 1
Q ss_pred ccccEEEEECC-cEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCC-cccceEEEecCCEEEEEccCCCCCC
Q 002749 153 RYGHVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSA-RMYATASARSDGMFLLCGGRDASGA 230 (885)
Q Consensus 153 R~~ht~~~~~~-~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~-r~~hsa~~~~~g~l~i~GG~~~~~~ 230 (885)
..-..++...+ +.+|+.-- ..+.+|+|++......+.........+.. ..--.+++-.+|.||+..-
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~------ 202 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW------ 202 (246)
T ss_dssp SSEEEEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE------
T ss_pred ccccceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc------
Confidence 11124444433 46776432 23459999986543223322111011111 1223445557888888632
Q ss_pred cccceEEEEcC
Q 002749 231 PLADAYGLLMH 241 (885)
Q Consensus 231 ~l~dv~~~d~~ 241 (885)
..+.+++|+..
T Consensus 203 ~~~~I~~~~p~ 213 (246)
T PF08450_consen 203 GGGRIVVFDPD 213 (246)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEECCC
Confidence 12468888887
No 194
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=63.79 E-value=1.3e+02 Score=33.64 Aligned_cols=176 Identities=17% Similarity=0.161 Sum_probs=82.2
Q ss_pred CccEEEEE--CCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCccc
Q 002749 101 AAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVL 178 (885)
Q Consensus 101 ~~hsa~~~--~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ 178 (885)
..|.+... ++.+|+.. .-.+.+++|+.+....+.........++..--.|.+..-+++++||..-. .
T Consensus 145 h~H~v~~~pdg~~v~v~d------lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~-----s 213 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPD------LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL-----S 213 (345)
T ss_dssp CEEEEEE-TTSSEEEEEE------TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT-----T
T ss_pred cceeEEECCCCCEEEEEe------cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC-----C
Confidence 44666655 34777743 13567999999875433433222112222222233333355689988654 3
Q ss_pred CcEEEEecC--CCCeeEEEcC---CCCCCCCCc-ccceEEEecCC-EEEEEccCCCCCCcccceEEEEc-CCCCeeEEEe
Q 002749 179 SDAWALDTA--QKPYVWQRLN---PEGDRPSAR-MYATASARSDG-MFLLCGGRDASGAPLADAYGLLM-HRNGQWEWTL 250 (885)
Q Consensus 179 ndv~~~d~~--t~~~~W~~i~---~~g~~P~~r-~~hsa~~~~~g-~l~i~GG~~~~~~~l~dv~~~d~-~~~~~W~w~~ 250 (885)
+.|.+|+.. +. .|+.+. ..+...... ..+......++ .||+. -+. .+.+..|+. ..++..+++.
T Consensus 214 ~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs-nr~-----~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 214 NTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS-NRG-----SNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp TEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE-ECT-----TTEEEEEEECTTTTTEEEEE
T ss_pred CcEEEEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCEEEEE-ecc-----CCEEEEEEEecCCCceEEEE
Confidence 456666665 44 554443 222212222 23333344555 55653 322 345666666 3445555444
Q ss_pred CCCC-CCCccceeEEEE--ECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccC
Q 002749 251 APGV-APSPRYQHAAVF--VGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 305 (885)
Q Consensus 251 ~~~~-~P~~R~~hs~~~--~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~ 305 (885)
.... -..||. +++ -+..|||.....+ .-.++..|.+++.+..+..
T Consensus 286 ~~~~~G~~Pr~---~~~s~~g~~l~Va~~~s~-------~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 286 TVPTGGKFPRH---FAFSPDGRYLYVANQDSN-------TVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEESSSSEEE---EEE-TTSSEEEEEETTTT-------EEEEEEEETTTTEEEEEEE
T ss_pred EEeCCCCCccE---EEEeCCCCEEEEEecCCC-------eEEEEEEeCCCCcEEEecc
Confidence 3211 112432 222 2455666533111 1234455778888887764
No 195
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=63.78 E-value=2.8e+02 Score=32.08 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=38.6
Q ss_pred ECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecC
Q 002749 108 VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTA 187 (885)
Q Consensus 108 ~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~ 187 (885)
.++.+++.|+- +. -+-.+|+++.. .+....+..-.-|.+.-+ -.++.+++-||+|+. +-.||+.
T Consensus 121 ~d~t~l~s~sD--d~----v~k~~d~s~a~---v~~~l~~htDYVR~g~~~--~~~~hivvtGsYDg~-----vrl~DtR 184 (487)
T KOG0310|consen 121 QDNTMLVSGSD--DK----VVKYWDLSTAY---VQAELSGHTDYVRCGDIS--PANDHIVVTGSYDGK-----VRLWDTR 184 (487)
T ss_pred cCCeEEEecCC--Cc----eEEEEEcCCcE---EEEEecCCcceeEeeccc--cCCCeEEEecCCCce-----EEEEEec
Confidence 47899998873 22 14445665532 233334444445544322 234589999999885 5556666
Q ss_pred CC
Q 002749 188 QK 189 (885)
Q Consensus 188 t~ 189 (885)
+.
T Consensus 185 ~~ 186 (487)
T KOG0310|consen 185 SL 186 (487)
T ss_pred cC
Confidence 65
No 196
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=62.44 E-value=1.8e+02 Score=29.49 Aligned_cols=157 Identities=13% Similarity=0.054 Sum_probs=73.7
Q ss_pred EECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecC-CEEEEEccCCCCCCcccceEEE
Q 002749 160 LVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSD-GMFLLCGGRDASGAPLADAYGL 238 (885)
Q Consensus 160 ~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~-g~l~i~GG~~~~~~~l~dv~~~ 238 (885)
... +.+|+|-|. .+|+++.......-..+...-. ..+..-.++....+ +.+|+|-|. ..|+|
T Consensus 14 ~~~-g~~y~FkG~-------~~w~~~~~~~~~~p~~I~~~w~-~~p~~IDAa~~~~~~~~~yfFkg~--------~yw~~ 76 (194)
T cd00094 14 TLR-GELYFFKGR-------YFWRLSPGKPPGSPFLISSFWP-SLPSPVDAAFERPDTGKIYFFKGD--------KYWVY 76 (194)
T ss_pred EeC-CEEEEEeCC-------EEEEEeCCCCCCCCeEhhhhCC-CCCCCccEEEEECCCCEEEEECCC--------EEEEE
Confidence 344 688988774 4688876422101122221100 01222344444444 889998763 46777
Q ss_pred EcCCCCeeEEEe-C--CCCCCC-ccceeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCCcccCCCC
Q 002749 239 LMHRNGQWEWTL-A--PGVAPS-PRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTS 313 (885)
Q Consensus 239 d~~~~~~W~w~~-~--~~~~P~-~R~~hs~~~~-~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~ 313 (885)
+.... .+...+ + .+.++. .....+.... ++++|+|.| +..|.||....+...--+... .
T Consensus 77 ~~~~~-~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-----------~~y~ry~~~~~~v~~~yP~~i--~-- 140 (194)
T cd00094 77 TGKNL-EPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-----------DKYWRYDEKTQKMDPGYPKLI--E-- 140 (194)
T ss_pred cCccc-ccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-----------CEEEEEeCCCccccCCCCcch--h--
Confidence 65421 111000 0 011111 1122222222 589999988 358899976654321110000 0
Q ss_pred CCCCCCCCCcCcccccceEEEEeC-CEEEEEcCCCCCCCCCceEEeeCCCC
Q 002749 314 KGHGEHDPSLELMRRCRHASASIG-VRIYIYGGLKGDILLDDFLVAENSPF 363 (885)
Q Consensus 314 ~~~~~~~~~~~p~~R~~hs~~~~~-~~IyV~GG~~~~~~~~D~~~ld~~~~ 363 (885)
..-+ -.+..-.++.... +++|+|-| +.+|.+|..+.
T Consensus 141 ----~~w~---g~p~~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~ 177 (194)
T cd00094 141 ----TDFP---GVPDKVDAAFRWLDGYYYFFKG-------DQYWRFDPRSK 177 (194)
T ss_pred ----hcCC---CcCCCcceeEEeCCCcEEEEEC-------CEEEEEeCccc
Confidence 0000 0122223344444 78999988 45777776554
No 197
>PRK04792 tolB translocation protein TolB; Provisional
Probab=62.44 E-value=3e+02 Score=32.01 Aligned_cols=147 Identities=16% Similarity=0.222 Sum_probs=73.2
Q ss_pred CcEEEEEecCCcceEEEEeecCCCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCC
Q 002749 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~ 204 (885)
..+|++|+.+.+ -..+. ..+.. ....... +++.+++....++ ..++|.+|+.++ +...+.....
T Consensus 242 ~~L~~~dl~tg~--~~~lt---~~~g~--~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg--~~~~lt~~~~--- 306 (448)
T PRK04792 242 AEIFVQDIYTQV--REKVT---SFPGI--NGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATK--ALTRITRHRA--- 306 (448)
T ss_pred cEEEEEECCCCC--eEEec---CCCCC--cCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCC--CeEECccCCC---
Confidence 569999998754 44442 11211 1122223 3335554443333 257999999988 6777654311
Q ss_pred CcccceEEEecCCE-EEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcccCCCCC
Q 002749 205 ARMYATASARSDGM-FLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGR 282 (885)
Q Consensus 205 ~r~~hsa~~~~~g~-l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~-~~~l~V~GG~~~~~~ 282 (885)
.........++. |++.....+ ..++|.++.... .++.....+. +....++. +++.+++.+... +
T Consensus 307 --~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g-~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~~~~-g- 372 (448)
T PRK04792 307 --IDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASG-KVSRLTFEGE-----QNLGGSITPDGRSMIMVNRTN-G- 372 (448)
T ss_pred --CccceEECCCCCEEEEEECCCC----CceEEEEECCCC-CEEEEecCCC-----CCcCeeECCCCCEEEEEEecC-C-
Confidence 111223334554 444332222 247888887654 3333322111 11112222 444444433321 1
Q ss_pred CccCCCcEEEEECCCCcEEEccC
Q 002749 283 AIEGEAAVAVLDTAAGVWLDRNG 305 (885)
Q Consensus 283 ~~~~~~~v~~yD~~t~~W~~v~~ 305 (885)
...++++|+.+.+...+..
T Consensus 373 ----~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 ----KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred ----ceEEEEEECCCCCeEEccC
Confidence 2468999999998877653
No 198
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=61.84 E-value=12 Score=38.50 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=37.6
Q ss_pred eEEEecCCCC-----HHHHHHHHHHhC-CCCCCCCcceeeEEEeccccCCCCChH-------------HHHHHHHHHHhc
Q 002749 583 VKVFGDLHGQ-----FGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRGQHSL-------------ETITLLLALKIE 643 (885)
Q Consensus 583 i~vvGDiHG~-----~~~L~~il~~~g-~~~~~~~~~~~~~vfLGDyVDRG~~s~-------------evl~ll~~lk~~ 643 (885)
|++++|+|=. ++.|.++|..+. ....+ .+|++|+++|.-.... +-+..+.++...
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~------~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPD------VLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES 74 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTEC------EEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCc------EEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh
Confidence 5677777755 556667776655 22222 7999999999633221 111122222111
Q ss_pred --CCCCEEEeccCCcccch
Q 002749 644 --YPENVHLIRGNHEAADI 660 (885)
Q Consensus 644 --~p~~v~llrGNHE~~~~ 660 (885)
---+|+++.|+||....
T Consensus 75 i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 75 ILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp CHCCSEEEEE--TTCTT-S
T ss_pred cccccEEEEeCCCcccccc
Confidence 12589999999998665
No 199
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=61.21 E-value=2.6e+02 Score=30.83 Aligned_cols=185 Identities=17% Similarity=0.246 Sum_probs=80.9
Q ss_pred EEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccc
Q 002749 77 VHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYG 155 (885)
Q Consensus 77 v~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~-~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ 155 (885)
++.-.-.-.+|++++.... .|-..+....+ ++.++++|..+ .+|+ ....--+|+.+... ....-
T Consensus 83 ll~T~DgG~tW~~v~l~~~--lpgs~~~i~~l~~~~~~l~~~~G-------~iy~--T~DgG~tW~~~~~~----~~gs~ 147 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSK--LPGSPFGITALGDGSAELAGDRG-------AIYR--TTDGGKTWQAVVSE----TSGSI 147 (302)
T ss_dssp EEEESSTTSS-EE----TT---SS-EEEEEEEETTEEEEEETT---------EEE--ESSTTSSEEEEE-S--------E
T ss_pred EEEecCCCCCcEEeecCCC--CCCCeeEEEEcCCCcEEEEcCCC-------cEEE--eCCCCCCeeEcccC----Cccee
Confidence 3333334578999874322 23344444444 55777766431 1333 33322459988431 11222
Q ss_pred cEEEEECCcEEEEEecCCCCcccCcEE-EEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccc
Q 002749 156 HVMDLVSQRYLVSVSGNDGKRVLSDAW-ALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLAD 234 (885)
Q Consensus 156 ht~~~~~~~~lyv~GG~~~~~~~ndv~-~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~d 234 (885)
..+....++.+++++.. + .++ ..|+... .|+..... ..|+-.++....++.+++.. +.+ .
T Consensus 148 ~~~~r~~dG~~vavs~~-G-----~~~~s~~~G~~--~w~~~~r~----~~~riq~~gf~~~~~lw~~~-~Gg------~ 208 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSR-G-----NFYSSWDPGQT--TWQPHNRN----SSRRIQSMGFSPDGNLWMLA-RGG------Q 208 (302)
T ss_dssp EEEEE-TTS-EEEEETT-S-----SEEEEE-TT-S--S-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT------E
T ss_pred EeEEECCCCcEEEEECc-c-----cEEEEecCCCc--cceEEccC----ccceehhceecCCCCEEEEe-CCc------E
Confidence 23344566676666643 2 344 4677766 78887543 66777888878888887754 222 2
Q ss_pred eEEEEcCCCCeeEEEeCCCCCCCcccee-EEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCC
Q 002749 235 AYGLLMHRNGQWEWTLAPGVAPSPRYQH-AAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 235 v~~~d~~~~~~W~w~~~~~~~P~~R~~h-s~~~~-~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
++.-+ ..+..-+|.+.........++. .+++- ++.+++.||. ..+++-.-.-++|.+....
T Consensus 209 ~~~s~-~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~----------G~l~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 209 IQFSD-DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS----------GTLLVSTDGGKTWQKDRVG 271 (302)
T ss_dssp EEEEE--TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST----------T-EEEESSTTSS-EE-GGG
T ss_pred EEEcc-CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC----------ccEEEeCCCCccceECccc
Confidence 33333 1111225555332222333432 33333 5789999983 3466666666789998754
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=58.38 E-value=2.4e+02 Score=29.93 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=48.4
Q ss_pred CCcEEEecCCCC--CCcccCccEEEE-ECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEE
Q 002749 84 TRKWTRIRPAGE--PPSPRAAHAAAA-VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDL 160 (885)
Q Consensus 84 t~~W~~l~~~g~--~P~~R~~hsa~~-~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~ 160 (885)
+..|+..+|+.. .+.|-....... -.|.|++.||- + .+|+.|+.+.+ -++.. --..-|-|+.+.
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD---~----~~y~~dlE~G~--i~r~~----rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD---G----VIYQVDLEDGR--IQREY----RGHTDYVHSVVG 164 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC---e----EEEEEEecCCE--EEEEE----cCCcceeeeeee
Confidence 345776666532 333333322222 46899999973 2 38999999855 44441 122345555544
Q ss_pred ECCcEEEEEecCCCCcccCcEEEEecCCC
Q 002749 161 VSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 161 ~~~~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
-...-=++-|+.+|. +-++|+.|.
T Consensus 165 R~~~~qilsG~EDGt-----vRvWd~kt~ 188 (325)
T KOG0649|consen 165 RNANGQILSGAEDGT-----VRVWDTKTQ 188 (325)
T ss_pred cccCcceeecCCCcc-----EEEEecccc
Confidence 232223346776663 667777776
No 201
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=57.87 E-value=2.2e+02 Score=28.90 Aligned_cols=177 Identities=14% Similarity=0.134 Sum_probs=77.1
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCc
Q 002749 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 75 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~-~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R 153 (885)
+.+++||..+.+....-.. ....-.++... ++.+++.|+. ...+.+||+.+... ...+. ....
T Consensus 73 ~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~-~~~~~-----~~~~ 136 (289)
T cd00200 73 KTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETGKC-LTTLR-----GHTD 136 (289)
T ss_pred CeEEEEEcCcccceEEEec----cCCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCcEE-EEEec-----cCCC
Confidence 5678888876532211111 01111222222 2366666652 23588999875321 11221 1111
Q ss_pred cccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCccc
Q 002749 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (885)
Q Consensus 154 ~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~ 233 (885)
.-..+....++.+++.|+.++ .+.+||+.+.. ....+.. ......+.....++..+++++.+ .
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~~-~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~------~ 199 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDG-----TIKLWDLRTGK-CVATLTG-----HTGEVNSVAFSPDGEKLLSSSSD------G 199 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCC-----cEEEEEccccc-cceeEec-----CccccceEEECCCcCEEEEecCC------C
Confidence 112232333345555554333 57888887541 1111111 11112334444565455555542 3
Q ss_pred ceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEEC-CEEEEEcccCCCCCCccCCCcEEEEECCCC
Q 002749 234 DAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVG-ARLHVTGGALRGGRAIEGEAAVAVLDTAAG 298 (885)
Q Consensus 234 dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~-~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~ 298 (885)
.+..|+.... ....... .....-.++++.. +.+++.++. ...+.+||..+.
T Consensus 200 ~i~i~d~~~~---~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~---------~~~i~i~~~~~~ 251 (289)
T cd00200 200 TIKLWDLSTG---KCLGTLR--GHENGVNSVAFSPDGYLLASGSE---------DGTIRVWDLRTG 251 (289)
T ss_pred cEEEEECCCC---ceecchh--hcCCceEEEEEcCCCcEEEEEcC---------CCcEEEEEcCCc
Confidence 4566666533 2222110 1111223333333 456665542 235888988764
No 202
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=57.66 E-value=19 Score=38.54 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-----hHHHHHHHHHHHhcCCCCEEEeccCCcc
Q 002749 591 GQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-----SLETITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 591 G~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-----s~evl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
|-+..+..+++.......+ .-+|..||+++..+. ...++..|-.+. .-+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~~-----~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENPN-----TLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCCC-----EEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEeeccccc
Confidence 3456666677665432111 156679999987653 234555555542 23567899996
No 203
>PRK04043 tolB translocation protein TolB; Provisional
Probab=57.32 E-value=3.6e+02 Score=31.19 Aligned_cols=152 Identities=12% Similarity=0.077 Sum_probs=76.6
Q ss_pred cEEEEEecCCcceEEEEeecCCCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCC
Q 002749 127 DLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSA 205 (885)
Q Consensus 127 dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~ 205 (885)
++|++|+.+.. =.++.. .+. ... ..... +++.+++.-..++ ..++|.+|+.+. .+..++... .
T Consensus 214 ~Iyv~dl~tg~--~~~lt~---~~g-~~~-~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g--~~~~LT~~~---~- 277 (419)
T PRK04043 214 TLYKYNLYTGK--KEKIAS---SQG-MLV-VSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTK--TLTQITNYP---G- 277 (419)
T ss_pred EEEEEECCCCc--EEEEec---CCC-cEE-eeEECCCCCEEEEEEccCC---CcEEEEEECCCC--cEEEcccCC---C-
Confidence 79999997743 334421 111 111 11122 3334544433332 358999999888 788876431 1
Q ss_pred cccceEEEecCC-EEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCc
Q 002749 206 RMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (885)
Q Consensus 206 r~~hsa~~~~~g-~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~ 284 (885)
.........|| .|++...+.+ ..++|.++.... +...+... +.+.. ...-+++.+++-.........
T Consensus 278 -~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g---~~~rlt~~---g~~~~-~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 278 -IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSG---SVEQVVFH---GKNNS-SVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred -ccCccEECCCCCEEEEEECCCC----CceEEEEECCCC---CeEeCccC---CCcCc-eECCCCCEEEEEEcCCCcccC
Confidence 12223344555 5555544321 357899988754 23233211 11222 222244433333322211111
Q ss_pred cCCCcEEEEECCCCcEEEccCC
Q 002749 285 EGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 285 ~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
.....++++|+++..++.+...
T Consensus 346 ~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred CCCcEEEEEECCCCCeEECCCC
Confidence 1135799999999999888753
No 204
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=56.72 E-value=1.7e+02 Score=33.54 Aligned_cols=129 Identities=8% Similarity=0.024 Sum_probs=62.0
Q ss_pred ccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE----CCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEee-cC
Q 002749 73 VTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV----GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVV-QG 147 (885)
Q Consensus 73 ~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~----~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~-~~ 147 (885)
...++|++.+.++.--.+ ..+.+.+.+++ ++++++-||.+. .+.+|++..-- ..... ..
T Consensus 101 i~g~lYlWelssG~LL~v-------~~aHYQ~ITcL~fs~dgs~iiTgskDg------~V~vW~l~~lv---~a~~~~~~ 164 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLNV-------LSAHYQSITCLKFSDDGSHIITGSKDG------AVLVWLLTDLV---SADNDHSV 164 (476)
T ss_pred ccCcEEEEEeccccHHHH-------HHhhccceeEEEEeCCCcEEEecCCCc------cEEEEEEEeec---ccccCCCc
Confidence 357899988877643211 11222233332 678888888532 25555543200 00000 01
Q ss_pred CCCCCccccEEEEECCcEEEEEecCCCCc----ccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEc
Q 002749 148 QGPGPRYGHVMDLVSQRYLVSVSGNDGKR----VLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCG 223 (885)
Q Consensus 148 ~~p~~R~~ht~~~~~~~~lyv~GG~~~~~----~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~G 223 (885)
.+-.--.+|++.+.+ ..+-+||.+..- .-+.+-+||+... .-+... -.|+.-++++.-..+..+.+|
T Consensus 165 ~p~~~f~~HtlsITD--l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----~LLlti---~fp~si~av~lDpae~~~yiG 235 (476)
T KOG0646|consen 165 KPLHIFSDHTLSITD--LQIGSGGTNARLYTASEDRTIKLWDLSLG----VLLLTI---TFPSSIKAVALDPAERVVYIG 235 (476)
T ss_pred cceeeeccCcceeEE--EEecCCCccceEEEecCCceEEEEEeccc----eeeEEE---ecCCcceeEEEcccccEEEec
Confidence 122233566775544 445566654421 1245667888776 112111 244445666655555555556
Q ss_pred cCC
Q 002749 224 GRD 226 (885)
Q Consensus 224 G~~ 226 (885)
+..
T Consensus 236 t~~ 238 (476)
T KOG0646|consen 236 TEE 238 (476)
T ss_pred CCc
Confidence 643
No 205
>PLN00181 protein SPA1-RELATED; Provisional
Probab=56.66 E-value=5e+02 Score=32.68 Aligned_cols=146 Identities=13% Similarity=0.124 Sum_probs=66.2
Q ss_pred CEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEecCC
Q 002749 110 TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQ 188 (885)
Q Consensus 110 ~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t 188 (885)
+.+++.|+. ...+.+||+.+.+ ..... .+. ...-.++... .++.+++.||.++ .+.+||+.+
T Consensus 545 ~~~las~~~------Dg~v~lWd~~~~~--~~~~~-~~H---~~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~ 607 (793)
T PLN00181 545 KSQVASSNF------EGVVQVWDVARSQ--LVTEM-KEH---EKRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQ 607 (793)
T ss_pred CCEEEEEeC------CCeEEEEECCCCe--EEEEe-cCC---CCCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCC
Confidence 345555553 3348889987633 21111 111 1111222222 2446777888765 377788876
Q ss_pred CCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEEC
Q 002749 189 KPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVG 268 (885)
Q Consensus 189 ~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~ 268 (885)
.. ....+... ...........++.+++.|+.++ .+..|+...... ......+. ...-..+.+.+
T Consensus 608 ~~-~~~~~~~~-----~~v~~v~~~~~~g~~latgs~dg------~I~iwD~~~~~~-~~~~~~~h---~~~V~~v~f~~ 671 (793)
T PLN00181 608 GV-SIGTIKTK-----ANICCVQFPSESGRSLAFGSADH------KVYYYDLRNPKL-PLCTMIGH---SKTVSYVRFVD 671 (793)
T ss_pred Cc-EEEEEecC-----CCeEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCCc-cceEecCC---CCCEEEEEEeC
Confidence 41 22222211 01111111124567777777543 366666653310 01111111 11112333446
Q ss_pred CEEEEEcccCCCCCCccCCCcEEEEECCC
Q 002749 269 ARLHVTGGALRGGRAIEGEAAVAVLDTAA 297 (885)
Q Consensus 269 ~~l~V~GG~~~~~~~~~~~~~v~~yD~~t 297 (885)
+..++.|+.+ ..+.+||+..
T Consensus 672 ~~~lvs~s~D---------~~ikiWd~~~ 691 (793)
T PLN00181 672 SSTLVSSSTD---------NTLKLWDLSM 691 (793)
T ss_pred CCEEEEEECC---------CEEEEEeCCC
Confidence 6666776632 3477788764
No 206
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.36 E-value=2.7e+02 Score=29.45 Aligned_cols=176 Identities=19% Similarity=0.210 Sum_probs=95.4
Q ss_pred CcEEEEECCCCcEEE-ecCCCCCCcccCccEEEEEC--CEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCC
Q 002749 75 NSVHLYDVLTRKWTR-IRPAGEPPSPRAAHAAAAVG--TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (885)
Q Consensus 75 ~dv~~yd~~t~~W~~-l~~~g~~P~~R~~hsa~~~~--~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~ 151 (885)
..++++|..+++-.+ +-. --+.-.++.++ ..|++-|+. ...+-+||+.+.. .+.+ .....
T Consensus 81 k~v~vwDV~TGkv~Rr~rg------H~aqVNtV~fNeesSVv~Sgsf------D~s~r~wDCRS~s--~ePi---Qilde 143 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRG------HLAQVNTVRFNEESSVVASGSF------DSSVRLWDCRSRS--FEPI---QILDE 143 (307)
T ss_pred ceEEEEEcccCeeeeeccc------ccceeeEEEecCcceEEEeccc------cceeEEEEcccCC--CCcc---chhhh
Confidence 458889998875321 110 01112233333 377777774 4558899999855 4444 44667
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCc
Q 002749 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 231 (885)
Q Consensus 152 ~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~ 231 (885)
.+.+-..+.+.+ ..+|.|..++ .+-.||+..+... ..-++. |. -+.....++...+.|-
T Consensus 144 a~D~V~Si~v~~-heIvaGS~DG-----tvRtydiR~G~l~---sDy~g~-pi----t~vs~s~d~nc~La~~------- 202 (307)
T KOG0316|consen 144 AKDGVSSIDVAE-HEIVAGSVDG-----TVRTYDIRKGTLS---SDYFGH-PI----TSVSFSKDGNCSLASS------- 202 (307)
T ss_pred hcCceeEEEecc-cEEEeeccCC-----cEEEEEeecceee---hhhcCC-cc----eeEEecCCCCEEEEee-------
Confidence 788887777775 7777777766 4678888876111 111221 11 1333445555555543
Q ss_pred ccceEEEEcCCCCeeEEEeC-CCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCc
Q 002749 232 LADAYGLLMHRNGQWEWTLA-PGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (885)
Q Consensus 232 l~dv~~~d~~~~~~W~w~~~-~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (885)
++...++-..++| +-... .+.. .--|---+++.+..-+|++|... ..++.||+....
T Consensus 203 l~stlrLlDk~tG--klL~sYkGhk-n~eykldc~l~qsdthV~sgSED--------G~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 203 LDSTLRLLDKETG--KLLKSYKGHK-NMEYKLDCCLNQSDTHVFSGSED--------GKVYFWDLVDET 260 (307)
T ss_pred ccceeeecccchh--HHHHHhcccc-cceeeeeeeecccceeEEeccCC--------ceEEEEEeccce
Confidence 3333333333222 11111 1111 12233455666777888988533 358889887764
No 207
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=55.70 E-value=2.2e+02 Score=30.65 Aligned_cols=174 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred cccCcEEEEECC-------CCc-EEEecCCCCCCcccCccEEEEEC--CEEEEEcCcCCCCCccCcEEEEEecCCcceEE
Q 002749 72 GVTNSVHLYDVL-------TRK-WTRIRPAGEPPSPRAAHAAAAVG--TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWH 141 (885)
Q Consensus 72 ~~~~dv~~yd~~-------t~~-W~~l~~~g~~P~~R~~hsa~~~~--~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~ 141 (885)
+....+.+||+. .+. ..+++ .+-+.-..+.++ +..+|.|+.... +-.||..++.
T Consensus 117 g~~~~v~~fdi~~~~~~~~s~ep~~kI~------t~~skit~a~Wg~l~~~ii~Ghe~G~------is~~da~~g~---- 180 (327)
T KOG0643|consen 117 GYTCFVSVFDIRDDSSDIDSEEPYLKIP------TPDSKITSALWGPLGETIIAGHEDGS------ISIYDARTGK---- 180 (327)
T ss_pred CcceEEEEEEccCChhhhcccCceEEec------CCccceeeeeecccCCEEEEecCCCc------EEEEEcccCc----
Q ss_pred EEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEE
Q 002749 142 RVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLL 221 (885)
Q Consensus 142 ~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i 221 (885)
......--..+.=-.+....+..++|.|..+....+-|+..+...+ ++..-.+. ..++..-..+.+++
T Consensus 181 -~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K---ty~te~Pv--------N~aaisP~~d~Vil 248 (327)
T KOG0643|consen 181 -ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK---TYTTERPV--------NTAAISPLLDHVIL 248 (327)
T ss_pred -eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE---Eeeecccc--------cceecccccceEEe
Q ss_pred EccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCcccee------------------EEEEE-CCEEEEEcccCCCCC
Q 002749 222 CGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQH------------------AAVFV-GARLHVTGGALRGGR 282 (885)
Q Consensus 222 ~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~h------------------s~~~~-~~~l~V~GG~~~~~~ 282 (885)
.||...... +-+....-...+|+.| +.++. +|+.|..||.++
T Consensus 249 gGGqeA~dV----------------TTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG--- 309 (327)
T KOG0643|consen 249 GGGQEAMDV----------------TTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG--- 309 (327)
T ss_pred cCCceeeee----------------eeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc---
Q ss_pred CccCCCcEEEEECC
Q 002749 283 AIEGEAAVAVLDTA 296 (885)
Q Consensus 283 ~~~~~~~v~~yD~~ 296 (885)
.-.+..||..
T Consensus 310 ----~VR~h~Fd~~ 319 (327)
T KOG0643|consen 310 ----YVRLHHFDSN 319 (327)
T ss_pred ----eEEEEEeccc
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=55.62 E-value=3.8e+02 Score=30.97 Aligned_cols=149 Identities=16% Similarity=0.115 Sum_probs=71.6
Q ss_pred CcEEEEEecCCcceEEEEeecCCCCCCccccEEEEEC-CcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCC
Q 002749 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVS-QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~-~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~ 204 (885)
..+|++|+.+.+ -..+. ..+. ......... +..+++....++ ..++|.+|+.+. ....+....
T Consensus 223 ~~i~i~dl~~G~--~~~l~---~~~~--~~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg--~~~~lt~~~---- 286 (429)
T PRK03629 223 SALVIQTLANGA--VRQVA---SFPR--HNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASG--QIRQVTDGR---- 286 (429)
T ss_pred cEEEEEECCCCC--eEEcc---CCCC--CcCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCC--CEEEccCCC----
Confidence 469999987744 33442 1111 111222332 334554433322 235999999887 666664331
Q ss_pred CcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCc
Q 002749 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (885)
Q Consensus 205 ~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~ 284 (885)
. .........++..+++..... + ..++|.++.... ..+.....+ .........-+++.+++.+...+
T Consensus 287 ~-~~~~~~wSPDG~~I~f~s~~~-g--~~~Iy~~d~~~g-~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g---- 353 (429)
T PRK03629 287 S-NNTEPTWFPDSQNLAYTSDQA-G--RPQVYKVNINGG-APQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---- 353 (429)
T ss_pred C-CcCceEECCCCCEEEEEeCCC-C--CceEEEEECCCC-CeEEeecCC----CCccCEEECCCCCEEEEEEccCC----
Confidence 1 112233445665444433211 1 246888877644 222221111 11111111224544444432221
Q ss_pred cCCCcEEEEECCCCcEEEccC
Q 002749 285 EGEAAVAVLDTAAGVWLDRNG 305 (885)
Q Consensus 285 ~~~~~v~~yD~~t~~W~~v~~ 305 (885)
...++++|+++.+++.+..
T Consensus 354 --~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 354 --QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred --CceEEEEECCCCCeEEeCC
Confidence 2358999999999887763
No 209
>PRK04792 tolB translocation protein TolB; Provisional
Probab=55.00 E-value=4e+02 Score=31.03 Aligned_cols=142 Identities=14% Similarity=0.175 Sum_probs=72.6
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCcc
Q 002749 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (885)
Q Consensus 75 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~ 154 (885)
..+|++|+.+++-+.+.... ..-...+..--++.|++....+ ...++|++|+.++. ..++.... . .
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~--~~~lt~~~---~--~ 307 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKKLALVLSKD----GQPEIYVVDIATKA--LTRITRHR---A--I 307 (448)
T ss_pred cEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCEEEEEEeCC----CCeEEEEEECCCCC--eEECccCC---C--C
Confidence 46999999988877765321 1111111111244566553321 13579999998854 66653211 1 1
Q ss_pred ccEEEEE-CCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCccc
Q 002749 155 GHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (885)
Q Consensus 155 ~ht~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~ 233 (885)
....... ++..+++....++ ..++|.+|+.+. ++..+...+.. ........++..+++.+.... ..
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g--~~~~Lt~~g~~-----~~~~~~SpDG~~l~~~~~~~g---~~ 374 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGG---KPQIYRVNLASG--KVSRLTFEGEQ-----NLGGSITPDGRSMIMVNRTNG---KF 374 (448)
T ss_pred ccceEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEEecCCCC-----CcCeeECCCCCEEEEEEecCC---ce
Confidence 1112222 3334544332222 257999999887 77777532211 112233456544444443221 34
Q ss_pred ceEEEEcCCC
Q 002749 234 DAYGLLMHRN 243 (885)
Q Consensus 234 dv~~~d~~~~ 243 (885)
.+|.++..+.
T Consensus 375 ~I~~~dl~~g 384 (448)
T PRK04792 375 NIARQDLETG 384 (448)
T ss_pred EEEEEECCCC
Confidence 6888887655
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=54.72 E-value=3.9e+02 Score=30.82 Aligned_cols=140 Identities=18% Similarity=0.163 Sum_probs=65.9
Q ss_pred CcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCc-EEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCC
Q 002749 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQR-YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~-~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~ 204 (885)
..+|++|+.+.. -..+.. .+. .........++ .+++....++. -++|.+|+.+. ....+....
T Consensus 228 ~~i~i~dl~tg~--~~~l~~---~~g--~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~--~~~~lt~~~---- 291 (429)
T PRK01742 228 SQLVVHDLRSGA--RKVVAS---FRG--HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGG--TPSQLTSGA---- 291 (429)
T ss_pred cEEEEEeCCCCc--eEEEec---CCC--ccCceeECCCCCEEEEEEecCCc---EEEEEEECCCC--CeEeeccCC----
Confidence 458999997743 334421 111 11122233344 44433333332 35899999877 555554321
Q ss_pred CcccceEEEecCCE-EEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCC
Q 002749 205 ARMYATASARSDGM-FLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRA 283 (885)
Q Consensus 205 ~r~~hsa~~~~~g~-l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~ 283 (885)
..........++. |++....++ ...+|.++..... -+. ... .. +. ....-+++.+++.+.
T Consensus 292 -~~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~-~~~--l~~---~~-~~-~~~SpDG~~ia~~~~------ 352 (429)
T PRK01742 292 -GNNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGG-ASL--VGG---RG-YS-AQISADGKTLVMING------ 352 (429)
T ss_pred -CCcCCEEECCCCCEEEEEECCCC----CceEEEEECCCCC-eEE--ecC---CC-CC-ccCCCCCCEEEEEcC------
Confidence 1122333445665 444333222 2367777665431 111 111 11 11 111124444444331
Q ss_pred ccCCCcEEEEECCCCcEEEcc
Q 002749 284 IEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 284 ~~~~~~v~~yD~~t~~W~~v~ 304 (885)
..++.+|..+.++..+.
T Consensus 353 ----~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 353 ----DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred ----CCEEEEECCCCCeEEec
Confidence 24778999999887664
No 211
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=54.42 E-value=3.9e+02 Score=30.73 Aligned_cols=94 Identities=12% Similarity=0.211 Sum_probs=46.8
Q ss_pred CCcEEEecCCCCCCccc--CccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEE
Q 002749 84 TRKWTRIRPAGEPPSPR--AAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV 161 (885)
Q Consensus 84 t~~W~~l~~~g~~P~~R--~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~ 161 (885)
-.+|++..........+ ...++...++..|++|-.+ .+|-....-.+|+++.....+|.. .+.....
T Consensus 119 G~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G---------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~ 187 (398)
T PLN00033 119 GKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKPA---------ILLHTSDGGETWERIPLSPKLPGE--PVLIKAT 187 (398)
T ss_pred CCCceECccCcccccccccceeeeEEECCEEEEEcCce---------EEEEEcCCCCCceECccccCCCCC--ceEEEEE
Confidence 45788754211111112 2344555677888886431 333333333459988543333333 2334445
Q ss_pred CCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEc
Q 002749 162 SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL 196 (885)
Q Consensus 162 ~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i 196 (885)
..+..++.|.. ..+++-+-.-. +|+.+
T Consensus 188 ~~~~~~ivg~~------G~v~~S~D~G~--tW~~~ 214 (398)
T PLN00033 188 GPKSAEMVTDE------GAIYVTSNAGR--NWKAA 214 (398)
T ss_pred CCCceEEEecc------ceEEEECCCCC--CceEc
Confidence 55556666632 23555443333 79887
No 212
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.49 E-value=29 Score=39.62 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=52.9
Q ss_pred cCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCC
Q 002749 580 RAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 655 (885)
Q Consensus 580 ~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 655 (885)
.++|.||||.-|.++.|.+-.+...-... ++.-++++|++.+--..+.|++.+.... ...|--++++-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~G----pFd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKSG----PFDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcCC----CceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence 37899999999999999887766543221 1125788999999877888888877664 35677777777765
No 213
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.13 E-value=3.2e+02 Score=29.36 Aligned_cols=94 Identities=17% Similarity=0.303 Sum_probs=58.6
Q ss_pred cCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCC
Q 002749 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~ 204 (885)
+.-+-..|+.+.+..|+.+ ...|....+.++++ ++|+|-+++ .+|.++..++..-|...... .
T Consensus 32 s~~~~avd~~sG~~~We~i------lg~RiE~sa~vvgd--fVV~GCy~g-----~lYfl~~~tGs~~w~f~~~~----~ 94 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAI------LGVRIECSAIVVGD--FVVLGCYSG-----GLYFLCVKTGSQIWNFVILE----T 94 (354)
T ss_pred CceEEEecCCCCcEEeehh------hCceeeeeeEEECC--EEEEEEccC-----cEEEEEecchhheeeeeehh----h
Confidence 4457888999988999988 45677777778887 477887655 47888888875567665432 1
Q ss_pred CcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCC
Q 002749 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN 243 (885)
Q Consensus 205 ~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~ 243 (885)
-...+.+....+.+| +|-.++ ..|.+|..+.
T Consensus 95 -vk~~a~~d~~~glIy-cgshd~------~~yalD~~~~ 125 (354)
T KOG4649|consen 95 -VKVRAQCDFDGGLIY-CGSHDG------NFYALDPKTY 125 (354)
T ss_pred -hccceEEcCCCceEE-EecCCC------cEEEeccccc
Confidence 111233333445555 455433 3566666554
No 214
>PRK00178 tolB translocation protein TolB; Provisional
Probab=53.00 E-value=4e+02 Score=30.51 Aligned_cols=146 Identities=16% Similarity=0.192 Sum_probs=71.7
Q ss_pred CcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCc-EEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCC
Q 002749 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQR-YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~-~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~ 204 (885)
..+|++|+.+.+ -..+.. .+. .........++ .+++....++ ..++|++|+.+. ....+....
T Consensus 223 ~~l~~~~l~~g~--~~~l~~---~~g--~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~~---- 286 (430)
T PRK00178 223 PRIFVQNLDTGR--REQITN---FEG--LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASR--QLSRVTNHP---- 286 (430)
T ss_pred CEEEEEECCCCC--EEEccC---CCC--CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCC--CeEEcccCC----
Confidence 469999998754 445421 111 11122223233 4443332222 257999999988 666665321
Q ss_pred CcccceEEEecCC-EEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEE-ECC-EEEEEcccCCCC
Q 002749 205 ARMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVF-VGA-RLHVTGGALRGG 281 (885)
Q Consensus 205 ~r~~hsa~~~~~g-~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~-~~~-~l~V~GG~~~~~ 281 (885)
. .........++ .+++.....+ ...+|.++.... .++.....+ .+.....+ -++ .|++... ..+
T Consensus 287 ~-~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g-~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~-~~~- 353 (430)
T PRK00178 287 A-IDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGG-RAERVTFVG-----NYNARPRLSADGKTLVMVHR-QDG- 353 (430)
T ss_pred C-CcCCeEECCCCCEEEEEECCCC----CceEEEEECCCC-CEEEeecCC-----CCccceEECCCCCEEEEEEc-cCC-
Confidence 1 11222334455 4444432221 246888887654 333322211 11112222 244 4444432 211
Q ss_pred CCccCCCcEEEEECCCCcEEEccC
Q 002749 282 RAIEGEAAVAVLDTAAGVWLDRNG 305 (885)
Q Consensus 282 ~~~~~~~~v~~yD~~t~~W~~v~~ 305 (885)
...++++|+.+.+++.+..
T Consensus 354 -----~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 -----NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred -----ceEEEEEECCCCCEEEccC
Confidence 2359999999998887764
No 215
>PRK04922 tolB translocation protein TolB; Provisional
Probab=52.61 E-value=4.2e+02 Score=30.57 Aligned_cols=147 Identities=18% Similarity=0.238 Sum_probs=72.3
Q ss_pred cCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCC
Q 002749 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRP 203 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P 203 (885)
...+|++|+.+.. ...+. ..+... .+.... ++..+++....++ ..++|.+|+.+. .-..+....
T Consensus 227 ~~~l~~~dl~~g~--~~~l~---~~~g~~--~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g--~~~~lt~~~--- 291 (433)
T PRK04922 227 RSAIYVQDLATGQ--RELVA---SFRGIN--GAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSR--QLTRLTNHF--- 291 (433)
T ss_pred CcEEEEEECCCCC--EEEec---cCCCCc--cCceECCCCCEEEEEEeCCC---CceEEEEECCCC--CeEECccCC---
Confidence 3569999998744 44442 122111 112222 2334544333333 257999999887 555554321
Q ss_pred CCcccceEEEecCCEEEEEc-cCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEE-C-CEEEEEcccCCC
Q 002749 204 SARMYATASARSDGMFLLCG-GRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-G-ARLHVTGGALRG 280 (885)
Q Consensus 204 ~~r~~hsa~~~~~g~l~i~G-G~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~-~-~~l~V~GG~~~~ 280 (885)
. .........++..+++. ...+ ..++|.++.... .++.....+ .+....++. + .+|++..+. +
T Consensus 292 -~-~~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g-~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~- 357 (433)
T PRK04922 292 -G-IDTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGG-SAERLTFQG-----NYNARASVSPDGKKIAMVHGS-G- 357 (433)
T ss_pred -C-CccceEECCCCCEEEEEECCCC----CceEEEEECCCC-CeEEeecCC-----CCccCEEECCCCCEEEEEECC-C-
Confidence 1 11223344566544443 2221 246888877644 333332211 222222332 3 455554331 1
Q ss_pred CCCccCCCcEEEEECCCCcEEEccC
Q 002749 281 GRAIEGEAAVAVLDTAAGVWLDRNG 305 (885)
Q Consensus 281 ~~~~~~~~~v~~yD~~t~~W~~v~~ 305 (885)
+ ...++++|+.+.+++.+..
T Consensus 358 ~-----~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 358 G-----QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred C-----ceeEEEEECCCCCeEECCC
Confidence 1 2369999999988876653
No 216
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=52.53 E-value=27 Score=37.70 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=46.2
Q ss_pred CeEEEecCCCC--HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-CChHHHHHHHHHHHhcCCCCEEEeccCCccc
Q 002749 582 PVKVFGDLHGQ--FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 582 ~i~vvGDiHG~--~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
+|.++|||=|. ...|.+.|..+......+ -+|..||...-| --+-+++..|..+-+ .++.+ |||+.-
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D-----~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT~-GNH~~D 71 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQAD-----LVIANGENTTHGKGLTLKIYEFLKQSGV----NYITM-GNHTWF 71 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCC-----EEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEEc-cchhcc
Confidence 58999999999 566667776655322220 355589999766 457888888887643 45555 999974
No 217
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=51.25 E-value=22 Score=40.89 Aligned_cols=34 Identities=9% Similarity=0.181 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCeEEEEeccccccceEEecCCeE
Q 002749 768 DRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQL 801 (885)
Q Consensus 768 ~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~ 801 (885)
..+++.+-++++++++=||.-.-+.+..-.+.++
T Consensus 322 ~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~ 355 (452)
T KOG1378|consen 322 EGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTC 355 (452)
T ss_pred HHHHHHHHHhceeEEEeccceehhccchhhccee
Confidence 4699999999999999999866555444445444
No 218
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=51.09 E-value=4.2e+02 Score=30.15 Aligned_cols=204 Identities=12% Similarity=0.082 Sum_probs=101.1
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCC-----CCccCcEEEEEecCCcceEEEEeec
Q 002749 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPA-----GHSTDDLYVLDLTNDKFKWHRVVVQ 146 (885)
Q Consensus 74 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~--~~~lyv~GG~~~~-----~~~~~dl~~~D~~~~~~~W~~v~~~ 146 (885)
...++++|+.+++...-. ..+...+.+.+ ++..+++...... ......+|+..+.+..-.= .+...
T Consensus 149 ~~~l~v~Dl~tg~~l~d~------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe 221 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLPDG------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFE 221 (414)
T ss_dssp EEEEEEEETTTTEEEEEE------EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC
T ss_pred eEEEEEEECCCCcCcCCc------ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEe
Confidence 356999999998544221 22333332333 3344444443332 2236789999887743221 12111
Q ss_pred CCCCCCcc-ccEEEEECCcEEEEEecCCCCcccCcEEEEecCCC---CeeEEEcCCCCCCCCCcccceEEEecCCEEEEE
Q 002749 147 GQGPGPRY-GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK---PYVWQRLNPEGDRPSARMYATASARSDGMFLLC 222 (885)
Q Consensus 147 ~~~p~~R~-~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~---~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~ 222 (885)
. +.... ...+....++.++++.-..+.. .+++|.+|.... ...|..+... ... ....+...++.+|+.
T Consensus 222 ~--~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~----~~~-~~~~v~~~~~~~yi~ 293 (414)
T PF02897_consen 222 E--PDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPR----EDG-VEYYVDHHGDRLYIL 293 (414)
T ss_dssp ---TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEES----SSS--EEEEEEETTEEEEE
T ss_pred e--cCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCC----CCc-eEEEEEccCCEEEEe
Confidence 1 12222 3333334444444444433333 578999999874 3467777532 111 222333346777776
Q ss_pred ccCCCCCCcccceEEEEcCCCC--eeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECC-CCc
Q 002749 223 GGRDASGAPLADAYGLLMHRNG--QWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTA-AGV 299 (885)
Q Consensus 223 GG~~~~~~~l~dv~~~d~~~~~--~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~-t~~ 299 (885)
-..+ .....+..++..... .|.-...+.. ....--.+...++.|++.--.+. ...+.+||.. +..
T Consensus 294 Tn~~---a~~~~l~~~~l~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~Lvl~~~~~~-------~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 294 TNDD---APNGRLVAVDLADPSPAEWWTVLIPED--EDVSLEDVSLFKDYLVLSYRENG-------SSRLRVYDLDDGKE 361 (414)
T ss_dssp E-TT----TT-EEEEEETTSTSGGGEEEEEE--S--SSEEEEEEEEETTEEEEEEEETT-------EEEEEEEETT-TEE
T ss_pred eCCC---CCCcEEEEecccccccccceeEEcCCC--CceeEEEEEEECCEEEEEEEECC-------ccEEEEEECCCCcE
Confidence 5532 234567777777664 2443333211 22233445556888887754322 4569999998 333
Q ss_pred EEEcc
Q 002749 300 WLDRN 304 (885)
Q Consensus 300 W~~v~ 304 (885)
-..++
T Consensus 362 ~~~~~ 366 (414)
T PF02897_consen 362 SREIP 366 (414)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 33333
No 219
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=49.95 E-value=42 Score=37.09 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=28.0
Q ss_pred eEEEeccccCCCC--ChHHHHHHHHHHHhcCCCCEEEeccCCcccc
Q 002749 616 DYLFLGDYVDRGQ--HSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 616 ~~vfLGDyVDRG~--~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
-+||+||.|+--. +...+|.-.++=.+.+.=-...+.||||...
T Consensus 103 lVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 103 LVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDES 148 (379)
T ss_pred EEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEeccccccc
Confidence 6999999998621 2333343333334444445778999999754
No 220
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=49.79 E-value=3.8e+02 Score=29.31 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=46.3
Q ss_pred CcEEEEECC-CCcEEEecCCCCCCcccCccEEEEECC-EEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCC
Q 002749 75 NSVHLYDVL-TRKWTRIRPAGEPPSPRAAHAAAAVGT-MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 75 ~dv~~yd~~-t~~W~~l~~~g~~P~~R~~hsa~~~~~-~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~ 152 (885)
+.+..|++. +++++.+.... .+ ....|.+..-++ .+|+.. . ..+.+.+||++++......+ ...+..
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~-~~-~~p~~i~~~~~g~~l~v~~-~-----~~~~v~v~~~~~~g~~~~~~---~~~~~~ 125 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESP-LP-GSPTHISTDHQGRFLFSAS-Y-----NANCVSVSPLDKDGIPVAPI---QIIEGL 125 (330)
T ss_pred CcEEEEEECCCCceEEeeeec-CC-CCceEEEECCCCCEEEEEE-c-----CCCeEEEEEECCCCCCCCce---eeccCC
Confidence 446667765 45666554221 11 111232222234 566653 2 13558888886532111122 111222
Q ss_pred ccccEEEEECC-cEEEEEecCCCCcccCcEEEEecCCC
Q 002749 153 RYGHVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 153 R~~ht~~~~~~-~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
..-|.+.+..+ +++|+..-. .+.+++||+.+.
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~~~ 158 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLK-----EDRIRLFTLSDD 158 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCC-----CCEEEEEEECCC
Confidence 23455544433 366654322 246888988763
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=49.60 E-value=4.6e+02 Score=30.20 Aligned_cols=149 Identities=9% Similarity=0.067 Sum_probs=70.1
Q ss_pred ccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCC
Q 002749 124 STDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRP 203 (885)
Q Consensus 124 ~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P 203 (885)
...++|+.|.+... =..+. .+.. .-.......++..+++...... ...+|.+|+.+. ....+...
T Consensus 180 ~~~~l~~~d~dg~~--~~~lt-~~~~----~v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g--~~~~l~~~---- 244 (435)
T PRK05137 180 RIKRLAIMDQDGAN--VRYLT-DGSS----LVLTPRFSPNRQEITYMSYANG--RPRVYLLDLETG--QRELVGNF---- 244 (435)
T ss_pred cceEEEEECCCCCC--cEEEe-cCCC----CeEeeEECCCCCEEEEEEecCC--CCEEEEEECCCC--cEEEeecC----
Confidence 36789999986633 22331 1111 1111212223333333332211 257999999887 56666432
Q ss_pred CCcccceEEEecCC-EEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEE-ECCEEEEEcccCCCC
Q 002749 204 SARMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVF-VGARLHVTGGALRGG 281 (885)
Q Consensus 204 ~~r~~hsa~~~~~g-~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~-~~~~l~V~GG~~~~~ 281 (885)
... ..+.....++ .|++....++ ..++|.++.... ....+.... . ......+ -+++-++|..... +
T Consensus 245 ~g~-~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~---~~~~Lt~~~-~--~~~~~~~spDG~~i~f~s~~~-g 312 (435)
T PRK05137 245 PGM-TFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSG---TTTRLTDSP-A--IDTSPSYSPDGSQIVFESDRS-G 312 (435)
T ss_pred CCc-ccCcEECCCCCEEEEEEecCC----CceEEEEECCCC---ceEEccCCC-C--ccCceeEcCCCCEEEEEECCC-C
Confidence 111 1223334555 4444333222 357888888755 333333221 1 1111222 2444334432111 1
Q ss_pred CCccCCCcEEEEECCCCcEEEcc
Q 002749 282 RAIEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 282 ~~~~~~~~v~~yD~~t~~W~~v~ 304 (885)
...+|++|..+.+.+.+.
T Consensus 313 -----~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 313 -----SPQLYVMNADGSNPRRIS 330 (435)
T ss_pred -----CCeEEEEECCCCCeEEee
Confidence 246999999888777665
No 222
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=49.01 E-value=53 Score=35.71 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=48.8
Q ss_pred CCeEEEecCC----CCHHHHHHHHHHhC-CCCCCCCcceeeEEEeccccCCC----CChH----HHHHHHHHH-HhcCC-
Q 002749 581 APVKVFGDLH----GQFGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRG----QHSL----ETITLLLAL-KIEYP- 645 (885)
Q Consensus 581 ~~i~vvGDiH----G~~~~L~~il~~~g-~~~~~~~~~~~~~vfLGDyVDRG----~~s~----evl~ll~~l-k~~~p- 645 (885)
..++|+||+| -.++.|.++|+.+. .-+++ . ...-+||+|+++-+. ..+. |-..-|..+ ..+||
T Consensus 28 ~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~-~-~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPEN-E-LPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHhhccCccc-C-CCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 4689999998 45778888888873 21111 1 123799999999663 2222 233334332 33455
Q ss_pred ----CCEEEeccCCccc
Q 002749 646 ----ENVHLIRGNHEAA 658 (885)
Q Consensus 646 ----~~v~llrGNHE~~ 658 (885)
.+++++.|-.|-.
T Consensus 106 L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHhcCeEEEECCCCCCC
Confidence 6899999999974
No 223
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=48.80 E-value=3.7e+02 Score=28.78 Aligned_cols=169 Identities=16% Similarity=0.111 Sum_probs=83.7
Q ss_pred CCEEEEEcCcCCCCCccCcEEEEEecCCc---ceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEe
Q 002749 109 GTMVVFQGGIGPAGHSTDDLYVLDLTNDK---FKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALD 185 (885)
Q Consensus 109 ~~~lyv~GG~~~~~~~~~dl~~~D~~~~~---~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d 185 (885)
.+++|++.|.... .++.|....+- .++.+. -.+|.+-.|...+++++..+|--. ..+++.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~---~~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRT---YKLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceE---EEEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 4588888886332 45555332110 011111 134555566666667765555433 246799999
Q ss_pred cCCCCee-EEEcCCCCCC---CCCcccceEE---EecCCEEEEEccCCCCCCcccceEEEEcCCCC-eeEEEeCCCCCCC
Q 002749 186 TAQKPYV-WQRLNPEGDR---PSARMYATAS---ARSDGMFLLCGGRDASGAPLADAYGLLMHRNG-QWEWTLAPGVAPS 257 (885)
Q Consensus 186 ~~t~~~~-W~~i~~~g~~---P~~r~~hsa~---~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~-~W~w~~~~~~~P~ 257 (885)
+.++... |..++..+-. |-....++-+ +-.+|..+|+.-....+. --+-.+|..+-. .-+|... .+.
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~--ivvskld~~tL~v~~tw~T~---~~k 170 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN--IVVSKLDPETLSVEQTWNTS---YPK 170 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc--EEEEeeCcccCceEEEEEec---cCc
Confidence 9999766 7777544322 2222223322 224455555444333321 111222222110 0134332 123
Q ss_pred ccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEE
Q 002749 258 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLD 302 (885)
Q Consensus 258 ~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~ 302 (885)
+..+. +-.+-|.||++-...... ..-.++||+.+++=..
T Consensus 171 ~~~~n-aFmvCGvLY~~~s~~~~~-----~~I~yafDt~t~~~~~ 209 (250)
T PF02191_consen 171 RSAGN-AFMVCGVLYATDSYDTRD-----TEIFYAFDTYTGKEED 209 (250)
T ss_pred hhhcc-eeeEeeEEEEEEECCCCC-----cEEEEEEECCCCceec
Confidence 33333 334578999997754332 2336789999886554
No 224
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=48.11 E-value=3.5e+02 Score=28.36 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=46.7
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCC
Q 002749 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 75 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~--~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~ 152 (885)
+.+++||..+.+....-..+. .+ ...+.. ++.+|+.++. ...+.+||+.+... ...+ +..
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~--~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~-~~~~------~~~ 114 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGP--DP---ELFALHPNGKILYIANED------DNLVTVIDIETRKV-LAEI------PVG 114 (300)
T ss_pred CeEEEEECCCCcEEEeccCCC--Cc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeE-EeEe------eCC
Confidence 568889998877654222211 11 122222 3466666542 23599999987431 1122 111
Q ss_pred ccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCC
Q 002749 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 153 R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
..-+.+....++.+++++..++ +.+..||..+.
T Consensus 115 ~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~ 147 (300)
T TIGR03866 115 VEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTY 147 (300)
T ss_pred CCcceEEECCCCCEEEEEecCC----CeEEEEeCCCC
Confidence 1123344444555666655432 23566787765
No 225
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=47.24 E-value=25 Score=41.93 Aligned_cols=72 Identities=25% Similarity=0.278 Sum_probs=42.5
Q ss_pred cCCeEEEecCCCCHH------------HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCC------ChHHHHHHHHHHH
Q 002749 580 RAPVKVFGDLHGQFG------------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ------HSLETITLLLALK 641 (885)
Q Consensus 580 ~~~i~vvGDiHG~~~------------~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~------~s~evl~ll~~lk 641 (885)
+-.|+-..|+||++. -+-++.........+.. ..-+|=.||+++..+ .....+.+|-.++
T Consensus 26 ~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~--~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~ 103 (517)
T COG0737 26 KLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENK--NVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALG 103 (517)
T ss_pred eEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcC--CeEEEeCCcccCCccccccccCCChHHHHHhhcC
Confidence 345888999999998 44444332221111110 113444999999843 3344666666664
Q ss_pred hcCCCCEEEeccCCccc
Q 002749 642 IEYPENVHLIRGNHEAA 658 (885)
Q Consensus 642 ~~~p~~v~llrGNHE~~ 658 (885)
. =.+-.||||.-
T Consensus 104 y-----Da~tiGNHEFd 115 (517)
T COG0737 104 Y-----DAMTLGNHEFD 115 (517)
T ss_pred C-----cEEeecccccc
Confidence 3 35778999984
No 226
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=46.85 E-value=28 Score=37.93 Aligned_cols=38 Identities=24% Similarity=0.128 Sum_probs=23.1
Q ss_pred eEEEeccccCCCCCh-------HHHHHHHHHHHhcCCCCEEEeccCCccc
Q 002749 616 DYLFLGDYVDRGQHS-------LETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 616 ~~vfLGDyVDRG~~s-------~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
-++..||+++.-+.+ .-++.++-++ +-=.+..||||.-
T Consensus 53 Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~m-----gyDa~tlGNHEFd 97 (282)
T cd07407 53 LLVDTGDLHDGNGLSDASPPPGSYSNPIFRMM-----PYDLLTIGNHELY 97 (282)
T ss_pred EEEeCCCccCCeeceeeecCCChHHHHHHHhc-----CCcEEeecccccC
Confidence 355699999754332 2234444444 3446788999984
No 227
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=46.82 E-value=28 Score=37.91 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=13.9
Q ss_pred HHHHH---cCCeEEEEeccccc
Q 002749 772 DFCKR---NKLQLIIRAHECVM 790 (885)
Q Consensus 772 ~fl~~---~~l~~iiR~H~~~~ 790 (885)
++.++ .++++||=||+-+.
T Consensus 200 ~lA~~~~~~giD~IigGHsH~~ 221 (285)
T cd07405 200 EMARALPAGGLDLIVGGHSQDP 221 (285)
T ss_pred HHHHhcCCCCCCEEEeCCCCcc
Confidence 44555 58999999997653
No 228
>PTZ00421 coronin; Provisional
Probab=46.37 E-value=5.7e+02 Score=30.30 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=32.7
Q ss_pred EEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCC
Q 002749 165 YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN 243 (885)
Q Consensus 165 ~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~ 243 (885)
.+++.||.++ .+.+||+.+.. .-..+... ...-.+.....++.+++.|+.++ .+..+|..+.
T Consensus 139 ~iLaSgs~Dg-----tVrIWDl~tg~-~~~~l~~h-----~~~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg 200 (493)
T PTZ00421 139 NVLASAGADM-----VVNVWDVERGK-AVEVIKCH-----SDQITSLEWNLDGSLLCTTSKDK------KLNIIDPRDG 200 (493)
T ss_pred CEEEEEeCCC-----EEEEEECCCCe-EEEEEcCC-----CCceEEEEEECCCCEEEEecCCC------EEEEEECCCC
Confidence 4666777654 47888988761 11222211 11112333446777788877543 2455565543
No 229
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=45.86 E-value=1.5e+02 Score=31.66 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcC-----
Q 002749 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIG----- 119 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~----- 119 (885)
+++|||.---+.... +-+.+.+-+.....|+.+..... .--+..-.+.+++.||+||..-
T Consensus 200 ~g~LyLtTRgt~~~~-------------~GS~L~rs~d~G~~w~slrfp~n--vHhtnlPFakvgD~l~mFgsERA~~EW 264 (367)
T PF12217_consen 200 DGVLYLTTRGTLPTN-------------PGSSLHRSDDNGQNWSSLRFPNN--VHHTNLPFAKVGDVLYMFGSERAENEW 264 (367)
T ss_dssp TTEEEEEEEES-TTS----------------EEEEESSTTSS-EEEE-TT-----SS---EEEETTEEEEEEE-SSTT-S
T ss_pred CCEEEEEEcCcCCCC-------------CcceeeeecccCCchhhcccccc--ccccCCCceeeCCEEEEEecccccccc
Confidence 778887653222221 34667788888888998864321 1122334567899999999642
Q ss_pred CCC----Cc---cCcEEEE--EecC---CcceEEEEee---cCCCCCCccccEEEEECCc-EEEEEecCC
Q 002749 120 PAG----HS---TDDLYVL--DLTN---DKFKWHRVVV---QGQGPGPRYGHVMDLVSQR-YLVSVSGND 173 (885)
Q Consensus 120 ~~~----~~---~~dl~~~--D~~~---~~~~W~~v~~---~~~~p~~R~~ht~~~~~~~-~lyv~GG~~ 173 (885)
+.+ ++ ....++. ++.+ +..+|..+.. .|..--...|...+++.++ ..|+|||.+
T Consensus 265 E~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 265 EGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp STT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred ccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 111 11 1123332 2221 2245776642 3444445566666677666 566999965
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=45.42 E-value=5.3e+02 Score=29.70 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=51.4
Q ss_pred CcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCC-EEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCC
Q 002749 179 SDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPS 257 (885)
Q Consensus 179 ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g-~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~ 257 (885)
..+|++|+.++ +-..+... +. . ..+.....++ .+++....++ ..++|.++..+. +...+.... .
T Consensus 228 ~~l~~~dl~~g--~~~~l~~~---~g-~-~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g---~~~~lt~~~-~ 292 (433)
T PRK04922 228 SAIYVQDLATG--QRELVASF---RG-I-NGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSR---QLTRLTNHF-G 292 (433)
T ss_pred cEEEEEECCCC--CEEEeccC---CC-C-ccCceECCCCCEEEEEEeCCC----CceEEEEECCCC---CeEECccCC-C
Confidence 56899999887 55555432 11 1 1122334455 4444322221 247898888765 223332211 1
Q ss_pred ccceeEEEEE-CCE-EEEEcccCCCCCCccCCCcEEEEECCCCcEEEcc
Q 002749 258 PRYQHAAVFV-GAR-LHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 258 ~R~~hs~~~~-~~~-l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~ 304 (885)
.....++. +++ |++.....+ ...+|.+|..+.+++.+.
T Consensus 293 --~~~~~~~spDG~~l~f~sd~~g-------~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 293 --IDTEPTWAPDGKSIYFTSDRGG-------RPQIYRVAASGGSAERLT 332 (433)
T ss_pred --CccceEECCCCCEEEEEECCCC-------CceEEEEECCCCCeEEee
Confidence 11122232 444 444332211 246999999888887765
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=44.55 E-value=5.5e+02 Score=29.59 Aligned_cols=147 Identities=16% Similarity=0.161 Sum_probs=69.3
Q ss_pred CcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCc-EEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCC
Q 002749 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQR-YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~-~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~ 204 (885)
..+|++|+.+.. =.++. ..+. ...+.....++ .+++....++ ..++|.+|..+. ....+....
T Consensus 220 ~~I~~~dl~~g~--~~~l~---~~~g--~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~~---- 283 (427)
T PRK02889 220 PVVYVHDLATGR--RRVVA---NFKG--SNSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGS--GLRRLTQSS---- 283 (427)
T ss_pred cEEEEEECCCCC--EEEee---cCCC--CccceEECCCCCEEEEEEccCC---CceEEEEECCCC--CcEECCCCC----
Confidence 469999998754 33331 1111 11122233333 4544444333 257999998876 555554321
Q ss_pred CcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcccCCCCCC
Q 002749 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRA 283 (885)
Q Consensus 205 ~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~-~~~l~V~GG~~~~~~~ 283 (885)
.. ........|+..+++... ..+ ...+|.++.... ..+-....+ .+.....+. +++.+++....++
T Consensus 284 ~~-~~~~~wSpDG~~l~f~s~-~~g--~~~Iy~~~~~~g-~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g--- 350 (427)
T PRK02889 284 GI-DTEPFFSPDGRSIYFTSD-RGG--APQIYRMPASGG-AAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG--- 350 (427)
T ss_pred CC-CcCeEEcCCCCEEEEEec-CCC--CcEEEEEECCCC-ceEEEecCC-----CCcCceEECCCCCEEEEEEccCC---
Confidence 11 112334456654444321 111 236787776543 222222211 111222222 4444444332211
Q ss_pred ccCCCcEEEEECCCCcEEEcc
Q 002749 284 IEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 284 ~~~~~~v~~yD~~t~~W~~v~ 304 (885)
...++++|+.+.+.+.+.
T Consensus 351 ---~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 351 ---AFKLYVQDLATGQVTALT 368 (427)
T ss_pred ---cEEEEEEECCCCCeEEcc
Confidence 236999999998877765
No 232
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.54 E-value=4.3e+02 Score=28.99 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=33.2
Q ss_pred CCCCCccCcEEEEEecCCcceE--EEEe----ecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecC
Q 002749 119 GPAGHSTDDLYVLDLTNDKFKW--HRVV----VQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTA 187 (885)
Q Consensus 119 ~~~~~~~~dl~~~D~~~~~~~W--~~v~----~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~ 187 (885)
.......+.+.++|+.+++ | .... ..+.....|..-.++...++.+..++|- +.+.|+.
T Consensus 166 ~~~~~g~~~i~~~Dli~~~--~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGG--------i~vgnP~ 230 (339)
T PF09910_consen 166 NNFHKGVSGIHCLDLISGK--WVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRGG--------IFVGNPY 230 (339)
T ss_pred cccccCCceEEEEEccCCe--EEEEecccccCCCCCceEeeccccEEEEeeeEEEEEecc--------EEEeCCC
Confidence 4444567789999999955 7 3332 1233334455555556665444444442 4566665
No 233
>PRK13684 Ycf48-like protein; Provisional
Probab=42.96 E-value=5.1e+02 Score=28.82 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=73.4
Q ss_pred CCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECC
Q 002749 84 TRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQ 163 (885)
Q Consensus 84 t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~ 163 (885)
-.+|++...... .......+....++..|+.|.. + -+++ ....--+|+++......|. ..+....+..
T Consensus 75 G~tW~~~~~~~~-~~~~~l~~v~~~~~~~~~~G~~---g----~i~~--S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~ 142 (334)
T PRK13684 75 GETWEERSLDLP-EENFRLISISFKGDEGWIVGQP---S----LLLH--TTDGGKNWTRIPLSEKLPG--SPYLITALGP 142 (334)
T ss_pred CCCceECccCCc-ccccceeeeEEcCCcEEEeCCC---c----eEEE--ECCCCCCCeEccCCcCCCC--CceEEEEECC
Confidence 468998753321 1111222333345556666531 1 1333 3332235998843111222 2233444455
Q ss_pred cEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCC
Q 002749 164 RYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN 243 (885)
Q Consensus 164 ~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~ 243 (885)
..+++.|.. ..+++-+-.-. +|+.+... ..-..+.+....++.+++.|... .++.......
T Consensus 143 ~~~~~~g~~------G~i~~S~DgG~--tW~~~~~~----~~g~~~~i~~~~~g~~v~~g~~G-------~i~~s~~~gg 203 (334)
T PRK13684 143 GTAEMATNV------GAIYRTTDGGK--NWEALVED----AAGVVRNLRRSPDGKYVAVSSRG-------NFYSTWEPGQ 203 (334)
T ss_pred Ccceeeecc------ceEEEECCCCC--CceeCcCC----CcceEEEEEECCCCeEEEEeCCc-------eEEEEcCCCC
Confidence 456655532 23455433333 89988653 23334455555677666665431 2333211111
Q ss_pred CeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcc
Q 002749 244 GQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGG 276 (885)
Q Consensus 244 ~~W~w~~~~~~~P~~R~~hs~~~~-~~~l~V~GG 276 (885)
. +|..... +..+.-+++++. ++.++++|.
T Consensus 204 ~--tW~~~~~--~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 204 T--AWTPHQR--NSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred C--eEEEeeC--CCcccceeeeEcCCCCEEEEec
Confidence 2 3545432 234444555444 677888865
No 234
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=42.70 E-value=3.4e+02 Score=32.65 Aligned_cols=122 Identities=18% Similarity=0.327 Sum_probs=68.6
Q ss_pred CCEEEEEcCcCCCCCccCcEEEEEecCCc----ceEEEEeecCCCC-CCccc-cEEEEECCcEEEEEecCCCCcccCcEE
Q 002749 109 GTMVVFQGGIGPAGHSTDDLYVLDLTNDK----FKWHRVVVQGQGP-GPRYG-HVMDLVSQRYLVSVSGNDGKRVLSDAW 182 (885)
Q Consensus 109 ~~~lyv~GG~~~~~~~~~dl~~~D~~~~~----~~W~~v~~~~~~p-~~R~~-ht~~~~~~~~lyv~GG~~~~~~~ndv~ 182 (885)
++.+++-||.+ ..+++||+.+.. .+...+.. ..++ +++.+ ++.+.-.++.++|-||.. .++-
T Consensus 129 ~~~lvaSgGLD------~~IflWDin~~~~~l~~s~n~~t~-~sl~sG~k~siYSLA~N~t~t~ivsGgte-----k~lr 196 (735)
T KOG0308|consen 129 NNELVASGGLD------RKIFLWDINTGTATLVASFNNVTV-NSLGSGPKDSIYSLAMNQTGTIIVSGGTE-----KDLR 196 (735)
T ss_pred CceeEEecCCC------ccEEEEEccCcchhhhhhcccccc-ccCCCCCccceeeeecCCcceEEEecCcc-----cceE
Confidence 67899999963 347888877531 11222222 2222 33322 233333445788888864 4688
Q ss_pred EEecCCCCeeEEEcCCCCCCCCCcccce-----EEEecCCEEEEEccCCCCC-----CcccceEEEEcCCCCeeEEEeCC
Q 002749 183 ALDTAQKPYVWQRLNPEGDRPSARMYAT-----ASARSDGMFLLCGGRDASG-----APLADAYGLLMHRNGQWEWTLAP 252 (885)
Q Consensus 183 ~~d~~t~~~~W~~i~~~g~~P~~r~~hs-----a~~~~~g~l~i~GG~~~~~-----~~l~dv~~~d~~~~~~W~w~~~~ 252 (885)
.||+.+. .++.- -| +|+ ..+..+|.=++.++.++.= ..-.++..|-.++++.|.|..-+
T Consensus 197 ~wDprt~----~kimk------Lr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 197 LWDPRTC----KKIMK------LR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred Eeccccc----cceee------ee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 8999986 22211 11 343 2344667666667655431 11345567788889999988774
Q ss_pred C
Q 002749 253 G 253 (885)
Q Consensus 253 ~ 253 (885)
.
T Consensus 266 s 266 (735)
T KOG0308|consen 266 S 266 (735)
T ss_pred C
Confidence 3
No 235
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=42.32 E-value=1.7e+02 Score=31.47 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=97.5
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCc
Q 002749 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~ 124 (885)
++.||.--|..+ .+.+..+|+.+++-.+... .|..-.+=.++.++++||..--.
T Consensus 55 ~g~LyESTG~yG-----------------~S~l~~~d~~tg~~~~~~~---l~~~~FgEGit~~~d~l~qLTWk------ 108 (264)
T PF05096_consen 55 DGTLYESTGLYG-----------------QSSLRKVDLETGKVLQSVP---LPPRYFGEGITILGDKLYQLTWK------ 108 (264)
T ss_dssp TTEEEEEECSTT-----------------EEEEEEEETTTSSEEEEEE----TTT--EEEEEEETTEEEEEESS------
T ss_pred CCEEEEeCCCCC-----------------cEEEEEEECCCCcEEEEEE---CCccccceeEEEECCEEEEEEec------
Confidence 678887777643 3568899999988655442 33556777899999999998763
Q ss_pred cCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCC-CCCC
Q 002749 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPE-GDRP 203 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~-g~~P 203 (885)
....++||..+ ...+ +..+.+.-|..++.-+ ..+++--|. +.++.+|+++-.. =.++... +..|
T Consensus 109 ~~~~f~yd~~t----l~~~---~~~~y~~EGWGLt~dg-~~Li~SDGS------~~L~~~dP~~f~~-~~~i~V~~~g~p 173 (264)
T PF05096_consen 109 EGTGFVYDPNT----LKKI---GTFPYPGEGWGLTSDG-KRLIMSDGS------SRLYFLDPETFKE-VRTIQVTDNGRP 173 (264)
T ss_dssp SSEEEEEETTT----TEEE---EEEE-SSS--EEEECS-SCEEEE-SS------SEEEEE-TTT-SE-EEEEE-EETTEE
T ss_pred CCeEEEEcccc----ceEE---EEEecCCcceEEEcCC-CEEEEECCc------cceEEECCcccce-EEEEEEEECCEE
Confidence 34489999987 2233 2233445788887444 478876664 5689999886411 1122111 0111
Q ss_pred CCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCC----------CccceeEEEEE--CCEE
Q 002749 204 SARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAP----------SPRYQHAAVFV--GARL 271 (885)
Q Consensus 204 ~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P----------~~R~~hs~~~~--~~~l 271 (885)
..+. --.-..+|.+|.= -. ..+.+.+.|+.+...-.|..+.+..+ ..-.-.+.|.. .+++
T Consensus 174 v~~L--NELE~i~G~IyAN-----VW-~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l 245 (264)
T PF05096_consen 174 VSNL--NELEYINGKIYAN-----VW-QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRL 245 (264)
T ss_dssp ---E--EEEEEETTEEEEE-----ET-TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEE
T ss_pred CCCc--EeEEEEcCEEEEE-----eC-CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEE
Confidence 1110 1112234555431 11 14566778888776667776653221 11233455553 4667
Q ss_pred EEEcc
Q 002749 272 HVTGG 276 (885)
Q Consensus 272 ~V~GG 276 (885)
||-|=
T Consensus 246 ~vTGK 250 (264)
T PF05096_consen 246 FVTGK 250 (264)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 77654
No 236
>PTZ00420 coronin; Provisional
Probab=42.28 E-value=7e+02 Score=30.17 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=33.0
Q ss_pred EEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCC
Q 002749 111 MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 111 ~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
.+++.||. ...+.+||+.+....+ .+. .+. .-.++....++.+++.++.++ .+.+||+.+.
T Consensus 139 ~iLaSgS~------DgtIrIWDl~tg~~~~-~i~----~~~--~V~SlswspdG~lLat~s~D~-----~IrIwD~Rsg 199 (568)
T PTZ00420 139 YIMCSSGF------DSFVNIWDIENEKRAF-QIN----MPK--KLSSLKWNIKGNLLSGTCVGK-----HMHIIDPRKQ 199 (568)
T ss_pred eEEEEEeC------CCeEEEEECCCCcEEE-EEe----cCC--cEEEEEECCCCCEEEEEecCC-----EEEEEECCCC
Confidence 45556653 2348889998754222 121 111 122333334456667776553 4888999876
No 237
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=41.36 E-value=26 Score=38.69 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=44.7
Q ss_pred CeEEEecCCCCHHHHHHHHHHh---CCCCCCCCcceeeEEEeccccC-CCCChHHHHHH------HH---H---HHhcCC
Q 002749 582 PVKVFGDLHGQFGDLMRLFDEY---GFPSTAGDITYIDYLFLGDYVD-RGQHSLETITL------LL---A---LKIEYP 645 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~---g~~~~~~~~~~~~~vfLGDyVD-RG~~s~evl~l------l~---~---lk~~~p 645 (885)
+|.|-|=-||+++.+-+-+..+ |-.+.+ -++++||+=- |....+.++.. |- . =.++.|
T Consensus 2 rIaVqGCcHG~Ld~iYkti~~~ek~~~tkVD------LLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~AP 75 (456)
T KOG2863|consen 2 RIAVQGCCHGELDNIYKTISLIEKRGNTKVD------LLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAP 75 (456)
T ss_pred ceeeecccchhHHHHHHHHHHHHHcCCCCcc------EEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCc
Confidence 6889999999999988555443 333333 6888999863 33322222211 11 1 123456
Q ss_pred CCEEEeccCCcccc
Q 002749 646 ENVHLIRGNHEAAD 659 (885)
Q Consensus 646 ~~v~llrGNHE~~~ 659 (885)
=--++|=||||.++
T Consensus 76 VlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 76 VLTIFIGGNHEASN 89 (456)
T ss_pred eeEEEecCchHHHH
Confidence 56678999999875
No 238
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=40.67 E-value=5.7e+02 Score=28.71 Aligned_cols=135 Identities=12% Similarity=0.186 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCc
Q 002749 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~ 124 (885)
+..+.+-||-. +-.|+++..+..|--.-+.. +--.-......++.++.-|+.
T Consensus 75 ~~~l~aTGGgD-------------------D~AflW~~~~ge~~~eltgH---KDSVt~~~FshdgtlLATGdm------ 126 (399)
T KOG0296|consen 75 NNNLVATGGGD-------------------DLAFLWDISTGEFAGELTGH---KDSVTCCSFSHDGTLLATGDM------ 126 (399)
T ss_pred CCceEEecCCC-------------------ceEEEEEccCCcceeEecCC---CCceEEEEEccCceEEEecCC------
Confidence 66788888854 44677888877764332211 111122333457888888885
Q ss_pred cCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEEC-CcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCC
Q 002749 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVS-QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRP 203 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~-~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P 203 (885)
+..+.+|..+++..+|.... .-..-....++ ...++++|-.++ .+|+|.+.+. .-.++-+...
T Consensus 127 sG~v~v~~~stg~~~~~~~~-------e~~dieWl~WHp~a~illAG~~DG-----svWmw~ip~~--~~~kv~~Gh~-- 190 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLDQ-------EVEDIEWLKWHPRAHILLAGSTDG-----SVWMWQIPSQ--ALCKVMSGHN-- 190 (399)
T ss_pred CccEEEEEcccCceEEEeec-------ccCceEEEEecccccEEEeecCCC-----cEEEEECCCc--ceeeEecCCC--
Confidence 33477777777666676651 11112222222 336777777665 4899999885 3444433311
Q ss_pred CCcccceEEEecCCEEEEEccC
Q 002749 204 SARMYATASARSDGMFLLCGGR 225 (885)
Q Consensus 204 ~~r~~hsa~~~~~g~l~i~GG~ 225 (885)
..+-+...+.+|+.++.|-.
T Consensus 191 --~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 191 --SPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred --CCcccccccCCCceEEEEec
Confidence 11223344566666666543
No 239
>PTZ00421 coronin; Provisional
Probab=40.55 E-value=6.9e+02 Score=29.60 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=33.7
Q ss_pred CEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCC
Q 002749 110 TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 110 ~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
+.+++.||. ...+.+||+.+... -..+. + ... .-..+....++.+++.|+.++ .+.+||+.+.
T Consensus 138 ~~iLaSgs~------DgtVrIWDl~tg~~-~~~l~--~-h~~--~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg 200 (493)
T PTZ00421 138 MNVLASAGA------DMVVNVWDVERGKA-VEVIK--C-HSD--QITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDG 200 (493)
T ss_pred CCEEEEEeC------CCEEEEEECCCCeE-EEEEc--C-CCC--ceEEEEEECCCCEEEEecCCC-----EEEEEECCCC
Confidence 356666663 23488899877431 11121 1 111 112222333456777777765 4788999876
No 240
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=40.22 E-value=5.5e+02 Score=28.33 Aligned_cols=242 Identities=14% Similarity=0.175 Sum_probs=99.3
Q ss_pred ceEecCCCCCCCccccEEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCC
Q 002749 18 TYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPP 97 (885)
Q Consensus 18 ~~w~~~~~~P~pR~ghs~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 97 (885)
..|+... +|....-..+.++ +.++-|++|-. +.++.=+---.+|+.+....+.+
T Consensus 6 ~~W~~v~-l~t~~~l~dV~F~-----d~~~G~~VG~~--------------------g~il~T~DGG~tW~~~~~~~~~~ 59 (302)
T PF14870_consen 6 NSWQQVS-LPTDKPLLDVAFV-----DPNHGWAVGAY--------------------GTILKTTDGGKTWQPVSLDLDNP 59 (302)
T ss_dssp --EEEEE--S-SS-EEEEEES-----SSS-EEEEETT--------------------TEEEEESSTTSS-EE-----S--
T ss_pred CCcEEee-cCCCCceEEEEEe-----cCCEEEEEecC--------------------CEEEEECCCCccccccccCCCcc
Confidence 4477655 3444444444544 25678888742 22332222336799886433222
Q ss_pred cccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcc
Q 002749 98 SPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRV 177 (885)
Q Consensus 98 ~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~ 177 (885)
.....+++...++..|+.|-. + + +|-....-.+|+++......|. ..+....++++..+++|..
T Consensus 60 ~~~~l~~I~f~~~~g~ivG~~---g-----~-ll~T~DgG~tW~~v~l~~~lpg--s~~~i~~l~~~~~~l~~~~----- 123 (302)
T PF14870_consen 60 FDYHLNSISFDGNEGWIVGEP---G-----L-LLHTTDGGKTWERVPLSSKLPG--SPFGITALGDGSAELAGDR----- 123 (302)
T ss_dssp ---EEEEEEEETTEEEEEEET---T-----E-EEEESSTTSS-EE----TT-SS---EEEEEEEETTEEEEEETT-----
T ss_pred ceeeEEEEEecCCceEEEcCC---c-----e-EEEecCCCCCcEEeecCCCCCC--CeeEEEEcCCCcEEEEcCC-----
Confidence 122233444557888888742 1 2 3333333346999854333443 3345556666677777643
Q ss_pred cCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEE-EcCCCCeeEEEeCCCCCC
Q 002749 178 LSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGL-LMHRNGQWEWTLAPGVAP 256 (885)
Q Consensus 178 ~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~-d~~~~~~W~w~~~~~~~P 256 (885)
..+++= ....-+|+.+... .....-.+....++.+++.+.+ ..++.- +.... .|......
T Consensus 124 -G~iy~T--~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~-------G~~~~s~~~G~~---~w~~~~r~-- 184 (302)
T PF14870_consen 124 -GAIYRT--TDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSR-------GNFYSSWDPGQT---TWQPHNRN-- 184 (302)
T ss_dssp ---EEEE--SSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETT-------SSEEEEE-TT-S---S-EEEE----
T ss_pred -CcEEEe--CCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECc-------ccEEEEecCCCc---cceEEccC--
Confidence 234443 3333489988643 2222333445578888777753 234432 33322 34444322
Q ss_pred CccceeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEE--CCCCcEEEccCCcccCCCCCCCCCCCCCcCcccccceEE
Q 002749 257 SPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLD--TAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHAS 333 (885)
Q Consensus 257 ~~R~~hs~~~~-~~~l~V~GG~~~~~~~~~~~~~v~~yD--~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~ 333 (885)
..|.-.++.+. ++.|+++. + + ..+..-+ -...+|.+.... . ....++.-.
T Consensus 185 ~~~riq~~gf~~~~~lw~~~-~-G--------g~~~~s~~~~~~~~w~~~~~~-~----------------~~~~~~~ld 237 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLA-R-G--------GQIQFSDDPDDGETWSEPIIP-I----------------KTNGYGILD 237 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEE-T-T--------TEEEEEE-TTEEEEE---B-T-T----------------SS--S-EEE
T ss_pred ccceehhceecCCCCEEEEe-C-C--------cEEEEccCCCCccccccccCC-c----------------ccCceeeEE
Confidence 33444444444 66777764 1 1 1244444 344578773211 1 013333343
Q ss_pred EEe--CCEEEEEcCCC
Q 002749 334 ASI--GVRIYIYGGLK 347 (885)
Q Consensus 334 ~~~--~~~IyV~GG~~ 347 (885)
..+ ++.+++.||..
T Consensus 238 ~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 238 LAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEESSSS-EEEEESTT
T ss_pred EEecCCCCEEEEeCCc
Confidence 344 46899999854
No 241
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=39.50 E-value=5e+02 Score=27.66 Aligned_cols=117 Identities=13% Similarity=0.123 Sum_probs=57.9
Q ss_pred CCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcC
Q 002749 162 SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMH 241 (885)
Q Consensus 162 ~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~ 241 (885)
..+.++..||- ..++..|++++ +.+..--. ..-+-|+.+.....-=++.|+.++. -.+|.....
T Consensus 125 ~enSi~~AgGD------~~~y~~dlE~G--~i~r~~rG----HtDYvH~vv~R~~~~qilsG~EDGt----vRvWd~kt~ 188 (325)
T KOG0649|consen 125 SENSILFAGGD------GVIYQVDLEDG--RIQREYRG----HTDYVHSVVGRNANGQILSGAEDGT----VRVWDTKTQ 188 (325)
T ss_pred CCCcEEEecCC------eEEEEEEecCC--EEEEEEcC----CcceeeeeeecccCcceeecCCCcc----EEEEecccc
Confidence 34466666653 24789999998 54443222 3445677776444444556775543 234443332
Q ss_pred CCCeeEEEeCCCCCCCcc--cee--EEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCC
Q 002749 242 RNGQWEWTLAPGVAPSPR--YQH--AAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 242 ~~~~W~w~~~~~~~P~~R--~~h--s~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
. .-+-+.....+..-| .+- .+...+..-+|+||- ..+-.++..+.+=+.+-++
T Consensus 189 k--~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG----------p~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 189 K--HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG----------PKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred c--eeEEeccccChhhcCcccCceeEEEeccCceEEecCC----------CceeEEeccCCCceEEEec
Confidence 1 112222222222223 232 455556777788872 1244455555554444433
No 242
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=37.31 E-value=1.2e+02 Score=30.73 Aligned_cols=89 Identities=22% Similarity=0.298 Sum_probs=59.8
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCCcccchhhhcCChH---HHHHHh---------CCCCchhh
Q 002749 615 IDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRL---ECIERM---------GENDGIWA 682 (885)
Q Consensus 615 ~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~---e~~~~~---------~~~~~~~~ 682 (885)
..+|||| .|-+..|.+.||-+|+.+|-.+.++ .|+-|.+..++...|.. +|..++ ++..-..+
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 3689988 5899999999999999999777665 89999988776555431 111111 11112235
Q ss_pred hhhhhhhccCCceEEEEcCeEEEecC
Q 002749 683 WTRFNQLFNCLPLAALIEKKIICMHG 708 (885)
Q Consensus 683 ~~~~~~~f~~LP~~~~i~~~il~vHg 708 (885)
|..+..+.-.+++...+--+++.+-|
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NG 140 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNG 140 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECC
Confidence 66677777777777666555666666
No 243
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=37.07 E-value=58 Score=36.11 Aligned_cols=69 Identities=22% Similarity=0.137 Sum_probs=38.1
Q ss_pred eEEEecCCCCHH------HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-------------hHHHHHHHHHHHhc
Q 002749 583 VKVFGDLHGQFG------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-------------SLETITLLLALKIE 643 (885)
Q Consensus 583 i~vvGDiHG~~~------~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~-------------s~evl~ll~~lk~~ 643 (885)
|+-+-|+||++. .+..+++........ .....-+|..||.+.-++. ..-++.+|-++.
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~-~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g-- 79 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAA-EYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALG-- 79 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhc-cCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccC--
Confidence 667889999964 333334433211000 0011246679999875442 334455555553
Q ss_pred CCCCEEEeccCCcc
Q 002749 644 YPENVHLIRGNHEA 657 (885)
Q Consensus 644 ~p~~v~llrGNHE~ 657 (885)
-=.+..||||.
T Consensus 80 ---~Da~tlGNHEF 90 (313)
T cd08162 80 ---VQAIALGNHEF 90 (313)
T ss_pred ---CcEEecccccc
Confidence 33677899995
No 244
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=36.13 E-value=53 Score=40.29 Aligned_cols=69 Identities=17% Similarity=0.084 Sum_probs=40.6
Q ss_pred ecCCeEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH-----------
Q 002749 579 LRAPVKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL----------- 631 (885)
Q Consensus 579 ~~~~i~vvGDiHG~~~~----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~----------- 631 (885)
+.-+|.-..|+||++.. +..+++...-... ..-+|-.||++...+.+-
T Consensus 24 ~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~llvD~GD~~qGsp~~~~~~~~~~~~g~ 98 (649)
T PRK09420 24 VDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAK-----NSVLVDNGDLIQGSPLGDYMAAKGLKAGD 98 (649)
T ss_pred ceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCC-----CEEEEECCCcCCCchhhhhhhhccccCCC
Confidence 34568889999999743 2233333321111 124666999997655431
Q ss_pred --HHHHHHHHHHhcCCCCEEEeccCCcc
Q 002749 632 --ETITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 632 --evl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
-++.+|-.| +.=....||||.
T Consensus 99 ~~p~i~amN~l-----gyDa~tlGNHEF 121 (649)
T PRK09420 99 VHPVYKAMNTL-----DYDVGNLGNHEF 121 (649)
T ss_pred cchHHHHHHhc-----CCcEEeccchhh
Confidence 245555555 344678899996
No 245
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=34.76 E-value=52 Score=40.23 Aligned_cols=66 Identities=20% Similarity=0.082 Sum_probs=37.8
Q ss_pred CeEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-------------HH
Q 002749 582 PVKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------LE 632 (885)
Q Consensus 582 ~i~vvGDiHG~~~~----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s-------------~e 632 (885)
+|.-..||||++.. +..+++...-... ..-+|-.||.+.--+.+ .-
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p 78 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVK-----NSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHP 78 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCC-----CeEEEECCCcCCCccchhhhhhccccCCCcCh
Confidence 47788999999753 2333333321111 12456699999755433 12
Q ss_pred HHHHHHHHHhcCCCCEEEeccCCcc
Q 002749 633 TITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 633 vl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
++.+|-.|. -=....||||.
T Consensus 79 ~~~~mN~lg-----yDa~tlGNHEF 98 (626)
T TIGR01390 79 VYKAMNLLK-----YDVGNLGNHEF 98 (626)
T ss_pred HHHHHhhcC-----ccEEecccccc
Confidence 444444443 33577899995
No 246
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=34.54 E-value=87 Score=33.60 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=42.3
Q ss_pred CeEEEecCCCCHH--HHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-CChHHHHHHHHHHHhcCCCCEEEeccCCccc
Q 002749 582 PVKVFGDLHGQFG--DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 582 ~i~vvGDiHG~~~--~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG-~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
+|.++|||=|.-. .+.+.|..+......+ -+|-.||..--| .-+-++...|..+.. .+..+ ||||.-
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D-----~vi~NgEn~~gg~gl~~~~~~~L~~~G~----D~iTl-GNH~fD 70 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKID-----FVIANGENAAGGKGITPKIAKELLSAGV----DVITM-GNHTWD 70 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCC-----EEEECCccccCCCCCCHHHHHHHHhcCC----CEEEe-cccccC
Confidence 4789999999864 3345554443211110 344579998666 367788888888754 34444 999863
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=34.46 E-value=3.4e+02 Score=32.27 Aligned_cols=98 Identities=10% Similarity=0.059 Sum_probs=54.0
Q ss_pred cCcEEEEECCCCcEEEe-cCCCCCCcccCccEEEEE--CCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCC--
Q 002749 74 TNSVHLYDVLTRKWTRI-RPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQ-- 148 (885)
Q Consensus 74 ~~dv~~yd~~t~~W~~l-~~~g~~P~~R~~hsa~~~--~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~-- 148 (885)
..+||++++..+.|-.- .+. . .+--++.+ -+-++.+||.. ..+..||+.... ....+.....
T Consensus 154 g~evYRlNLEqGrfL~P~~~~----~--~~lN~v~in~~hgLla~Gt~~------g~VEfwDpR~ks-rv~~l~~~~~v~ 220 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETD----S--GELNVVSINEEHGLLACGTED------GVVEFWDPRDKS-RVGTLDAASSVN 220 (703)
T ss_pred CcceEEEEccccccccccccc----c--ccceeeeecCccceEEecccC------ceEEEecchhhh-hheeeecccccC
Confidence 47899999999998632 211 1 22233333 35888888852 237888887642 2233322111
Q ss_pred -CCCCc--cccEEEEECC-cEEEEEecCCCCcccCcEEEEecCCC
Q 002749 149 -GPGPR--YGHVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 149 -~p~~R--~~ht~~~~~~-~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
.|..- ...++..+.+ +.=+-+|-.+| .++.||+.+.
T Consensus 221 s~pg~~~~~svTal~F~d~gL~~aVGts~G-----~v~iyDLRa~ 260 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDGLHVAVGTSTG-----SVLIYDLRAS 260 (703)
T ss_pred CCccccccCcceEEEecCCceeEEeeccCC-----cEEEEEcccC
Confidence 22221 1234444444 44454554443 5899999886
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=34.31 E-value=8.8e+02 Score=29.02 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=36.3
Q ss_pred CCCCccccEEEEECC-cEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCC
Q 002749 149 GPGPRYGHVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA 227 (885)
Q Consensus 149 ~p~~R~~ht~~~~~~-~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~ 227 (885)
+..|+.|.-+++..- .-+|+.|- -.+||+||++.+ .|-..-.. -.+...+..+. .-.-|+.+||.++
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqG--rfL~P~~~---~~~~lN~v~in-~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQG--RFLNPFET---DSGELNVVSIN-EEHGLLACGTEDG 197 (703)
T ss_pred eecCcCCccccccCCCccEEEeec------CcceEEEEcccc--cccccccc---ccccceeeeec-CccceEEecccCc
Confidence 566777777766642 24554432 257999999998 66432111 11222222222 2234777888543
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=33.97 E-value=7.6e+02 Score=28.20 Aligned_cols=102 Identities=7% Similarity=0.068 Sum_probs=52.5
Q ss_pred CcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCE-EEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCC
Q 002749 179 SDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGM-FLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPS 257 (885)
Q Consensus 179 ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~-l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~ 257 (885)
..+|++|+.++ +-+.+.... ..........++. +++....++ ..++|.++..+. ....+.... .
T Consensus 223 ~~l~~~~l~~g--~~~~l~~~~-----g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~---~~~~lt~~~-~ 287 (430)
T PRK00178 223 PRIFVQNLDTG--RREQITNFE-----GLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASR---QLSRVTNHP-A 287 (430)
T ss_pred CEEEEEECCCC--CEEEccCCC-----CCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCC---CeEEcccCC-C
Confidence 47999999887 555554321 1112233345554 433222111 257899988765 333333211 1
Q ss_pred ccceeEEEEE-CC-EEEEEcccCCCCCCccCCCcEEEEECCCCcEEEcc
Q 002749 258 PRYQHAAVFV-GA-RLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 258 ~R~~hs~~~~-~~-~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~ 304 (885)
......+. ++ +|++.....+ ...++.+|..+.+++.+.
T Consensus 288 --~~~~~~~spDg~~i~f~s~~~g-------~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 288 --IDTEPFWGKDGRTLYFTSDRGG-------KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred --CcCCeEECCCCCEEEEEECCCC-------CceEEEEECCCCCEEEee
Confidence 11122222 44 4554432211 246999999999887775
No 250
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=33.93 E-value=5.5e+02 Score=28.76 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=61.8
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCcccCccEEEEEC-CEEEEEcCc---CCCCCccCcEEEEEecCCcceEEEEeecC-C
Q 002749 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVG-TMVVFQGGI---GPAGHSTDDLYVLDLTNDKFKWHRVVVQG-Q 148 (885)
Q Consensus 74 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~-~~lyv~GG~---~~~~~~~~dl~~~D~~~~~~~W~~v~~~~-~ 148 (885)
+..+|++|..+++-.-.-+ .+-.++.+..-+ ..+|+..=. ...+...+-+..||..+-..+++...+.. .
T Consensus 16 ~~rv~viD~d~~k~lGmi~-----~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 16 TSRVYVIDADSGKLLGMID-----TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp SEEEEEEETTTTEEEEEEE-----EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred cceEEEEECCCCcEEEEee-----cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 4689999999987654432 334445444433 466765532 24455678889999999666777663322 1
Q ss_pred CCC-CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCC
Q 002749 149 GPG-PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 149 ~p~-~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
... +..+.....-+++++||+-=. +...|-+.|++..
T Consensus 91 ~~~~~~~~~~~ls~dgk~~~V~N~T----Pa~SVtVVDl~~~ 128 (342)
T PF06433_consen 91 AQVVPYKNMFALSADGKFLYVQNFT----PATSVTVVDLAAK 128 (342)
T ss_dssp --BS--GGGEEE-TTSSEEEEEEES----SSEEEEEEETTTT
T ss_pred heecccccceEEccCCcEEEEEccC----CCCeEEEEECCCC
Confidence 111 111122223355678876433 4567888898887
No 251
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=33.68 E-value=58 Score=34.92 Aligned_cols=65 Identities=28% Similarity=0.297 Sum_probs=40.3
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCC-CCEEEeccCCcccc
Q 002749 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYP-ENVHLIRGNHEAAD 659 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p-~~v~llrGNHE~~~ 659 (885)
.+++.|+|.|....+.. ..|+.+ -++-+||+-.-|. +-||+.+=-.+ -..| ++=+.|+||||.-.
T Consensus 62 ~r~VcisdtH~~~~~i~------~~p~gD------vlihagdfT~~g~-~~ev~~fn~~~-gslph~yKIVIaGNHELtF 127 (305)
T KOG3947|consen 62 ARFVCISDTHELTFDIN------DIPDGD------VLIHAGDFTNLGL-PEEVIKFNEWL-GSLPHEYKIVIAGNHELTF 127 (305)
T ss_pred eEEEEecCcccccCccc------cCCCCc------eEEeccCCccccC-HHHHHhhhHHh-ccCcceeeEEEeeccceee
Confidence 45899999998766543 234433 4577999987553 44555432221 1222 24578999999854
No 252
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=33.28 E-value=54 Score=43.28 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=16.3
Q ss_pred HHHHHHHHHH-cCCeEEEEecccc
Q 002749 767 PDRVSDFCKR-NKLQLIIRAHECV 789 (885)
Q Consensus 767 ~~~~~~fl~~-~~l~~iiR~H~~~ 789 (885)
++++.+..++ -++++||=||+-.
T Consensus 256 en~~~~la~~~~gID~Il~GHsH~ 279 (1163)
T PRK09419 256 EDSVYDLAEKTKGIDAIVAGHQHG 279 (1163)
T ss_pred chHHHHHHHhCCCCcEEEeCCCcc
Confidence 3455566655 4899999999643
No 253
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=32.32 E-value=1e+03 Score=29.04 Aligned_cols=92 Identities=11% Similarity=0.097 Sum_probs=52.7
Q ss_pred CCccceeEEEEE---CCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCCcccCCCCCCCCCCCCCcCcccccceE
Q 002749 256 PSPRYQHAAVFV---GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHA 332 (885)
Q Consensus 256 P~~R~~hs~~~~---~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs 332 (885)
|..+...+...+ +++++++- ....+++.++.++.+..++...... +... .-+.-.
T Consensus 425 ~~~~~~a~~i~ftid~~k~~~~s---------~~~~~le~~el~~ps~kel~~~~~~-----------~~~~--~I~~l~ 482 (691)
T KOG2048|consen 425 PLALLDASAISFTIDKNKLFLVS---------KNIFSLEEFELETPSFKELKSIQSQ-----------AKCP--SISRLV 482 (691)
T ss_pred hhhhccceeeEEEecCceEEEEe---------cccceeEEEEecCcchhhhhccccc-----------cCCC--cceeEE
Confidence 455544443332 56777764 1135688888888888877766331 0011 222233
Q ss_pred EEEeCCEEEEEcCCCCCCCCCceEEeeCCCCCcCCCCCccccc
Q 002749 333 SASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNSPLLTSE 375 (885)
Q Consensus 333 ~~~~~~~IyV~GG~~~~~~~~D~~~ld~~~~~~~~~~~~~~~~ 375 (885)
....|+.|.+.+++. +++++++++.+.....+.....
T Consensus 483 ~SsdG~yiaa~~t~g------~I~v~nl~~~~~~~l~~rln~~ 519 (691)
T KOG2048|consen 483 VSSDGNYIAAISTRG------QIFVYNLETLESHLLKVRLNID 519 (691)
T ss_pred EcCCCCEEEEEeccc------eEEEEEcccceeecchhccCcc
Confidence 333477888888543 4888888887776555444433
No 254
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=29.82 E-value=57 Score=34.87 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEecccc
Q 002749 766 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATN 809 (885)
Q Consensus 766 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~ 809 (885)
...-+..||+.+|..+ -+|++.+||.|++++-+|+||---.
T Consensus 139 ~~~~~~~fl~~lGy~~---~~Eyv~~G~~F~~g~i~I~l~ri~~ 179 (250)
T PF09637_consen 139 TSGSLLSFLNELGYRF---DYEYVVEGYRFFKGDIVIELFRIFK 179 (250)
T ss_dssp SSSSHHHHHHHTTEEE---EEEEEEEEEEEEECCEEEEEEEEEE
T ss_pred CCCCHHHHHHHcCCce---EEEEEEEEEEEEECCEEEEEEEEEe
Confidence 4567889999999877 6999999999999998888876443
No 255
>PRK04043 tolB translocation protein TolB; Provisional
Probab=29.34 E-value=9.3e+02 Score=27.76 Aligned_cols=192 Identities=11% Similarity=0.087 Sum_probs=97.9
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEEC-CEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCc
Q 002749 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 75 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~-~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R 153 (885)
.++|++|+.+++=+++.... .........-+ .++++.-... ...++|++|+.+.. +.++.. .+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~----g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~--~~~LT~---~~~-- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ----GMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKT--LTQITN---YPG-- 277 (419)
T ss_pred CEEEEEECCCCcEEEEecCC----CcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCc--EEEccc---CCC--
Confidence 47999999988877776321 11111112223 4565543321 24689999998854 777732 111
Q ss_pred cccEEEEEC-CcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCC---
Q 002749 154 YGHVMDLVS-QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG--- 229 (885)
Q Consensus 154 ~~ht~~~~~-~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~--- 229 (885)
......... +..+++.....+ ..++|++|+.+. ..+++...+. +.. ....+|..+++-......
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g--~~~rlt~~g~------~~~-~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSG--SVEQVVFHGK------NNS-SVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred ccCccEECCCCCEEEEEECCCC---CceEEEEECCCC--CeEeCccCCC------cCc-eECCCCCEEEEEEcCCCcccC
Confidence 122222332 335554443322 358999999988 6666654322 112 334455444443332211
Q ss_pred CcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccC
Q 002749 230 APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 305 (885)
Q Consensus 230 ~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~ 305 (885)
....+++.++.... .+..+... .....-...-+++.++|-...+ + ...++.++.....=..++.
T Consensus 346 ~~~~~I~v~d~~~g---~~~~LT~~---~~~~~p~~SPDG~~I~f~~~~~-~-----~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 346 KNTFNLYLISTNSD---YIRRLTAN---GVNQFPRFSSDGGSIMFIKYLG-N-----QSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CCCcEEEEEECCCC---CeEECCCC---CCcCCeEECCCCCEEEEEEccC-C-----cEEEEEEecCCCeeEEeec
Confidence 12357888887765 44444432 1222112222555554433221 1 3458888887765555543
No 256
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=29.26 E-value=7.6e+02 Score=26.69 Aligned_cols=109 Identities=14% Similarity=0.073 Sum_probs=66.6
Q ss_pred EECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEE
Q 002749 160 LVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLL 239 (885)
Q Consensus 160 ~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d 239 (885)
..+++.+|.--|..+. +.+.++|+.++ +-...... +++.+.-.+...++++|..==. -+-.+.||
T Consensus 52 ~~~~g~LyESTG~yG~---S~l~~~d~~tg--~~~~~~~l----~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd 116 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQ---SSLRKVDLETG--KVLQSVPL----PPRYFGEGITILGDKLYQLTWK------EGTGFVYD 116 (264)
T ss_dssp EEETTEEEEEECSTTE---EEEEEEETTTS--SEEEEEE-----TTT--EEEEEEETTEEEEEESS------SSEEEEEE
T ss_pred ecCCCEEEEeCCCCCc---EEEEEEECCCC--cEEEEEEC----CccccceeEEEECCEEEEEEec------CCeEEEEc
Confidence 3366689988887765 46789999998 33222223 4566777777777788876432 34467788
Q ss_pred cCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCc
Q 002749 240 MHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (885)
Q Consensus 240 ~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (885)
..+- +-+..- +.+..+-+.+.-+..+++.-| .+.++.+|+++.+
T Consensus 117 ~~tl---~~~~~~---~y~~EGWGLt~dg~~Li~SDG----------S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 117 PNTL---KKIGTF---PYPGEGWGLTSDGKRLIMSDG----------SSRLYFLDPETFK 160 (264)
T ss_dssp TTTT---EEEEEE---E-SSS--EEEECSSCEEEE-S----------SSEEEEE-TTT-S
T ss_pred cccc---eEEEEE---ecCCcceEEEcCCCEEEEECC----------ccceEEECCcccc
Confidence 7644 222221 233567888877888999888 4679999998764
No 257
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=29.22 E-value=56 Score=29.92 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=51.5
Q ss_pred CCCceeEeCHHHHHHHHHHcCCeEEEEeccccccceEEe------cCCeEEEEeccc---cccCCCCCeEEEEEEcCcc
Q 002749 758 RGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERF------AQGQLITLFSAT---NYCGTANNAGAILVVGRGL 827 (885)
Q Consensus 758 rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~------~~~~~itvfSa~---~y~~~~~n~ga~l~~~~~~ 827 (885)
|..|-+.+|.+.+.+-+++..+.++|.+-++-+++-+.+ ++-.+++.|+.- .-||. .+.+++.+.++.+
T Consensus 13 ~rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk-~~~~~iai~d~g~ 90 (104)
T PRK05583 13 KKAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGR-DEIKILGVKDKNM 90 (104)
T ss_pred HHhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCC-CCeEEEEEeChHH
Confidence 334557899999999999999999999999998875432 345678888762 45775 3477777777654
No 258
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=28.76 E-value=95 Score=32.42 Aligned_cols=60 Identities=27% Similarity=0.341 Sum_probs=33.8
Q ss_pred CCCEEEeccCCcccchhhhcCChHHHHHHhCCCCchhhhhhhhhhccCCceEEEE-cCeEEEecCCCCCC
Q 002749 645 PENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRS 713 (885)
Q Consensus 645 p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i-~~~il~vHgGi~~~ 713 (885)
.++|++|-||||.-. | |.+..-..+..-. ....| .....||++-.- +.+|+--|-||-.+
T Consensus 127 nknvvvlagnhein~-n---gny~arlanhkls-~gDTY----nlIKtldVC~YD~erkvltsHHGIird 187 (318)
T PF13258_consen 127 NKNVVVLAGNHEINF-N---GNYMARLANHKLS-AGDTY----NLIKTLDVCNYDPERKVLTSHHGIIRD 187 (318)
T ss_pred ccceEEEecCceecc-C---chHHHHHhhCCCC-ccchh----hccccccccccCcchhhhhcccCceec
Confidence 378999999999743 2 2222222222111 11233 344567776443 34788889998654
No 259
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.42 E-value=8.1e+02 Score=26.45 Aligned_cols=97 Identities=23% Similarity=0.356 Sum_probs=60.2
Q ss_pred cCcEEEEECCCCc--EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCC
Q 002749 74 TNSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (885)
Q Consensus 74 ~~dv~~yd~~t~~--W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~ 151 (885)
...+-..|+.++. |+.+- .-|...++.++++.|++ | + +..-+|.++..+...-|..+... .
T Consensus 32 s~~~~avd~~sG~~~We~il------g~RiE~sa~vvgdfVV~-G-C-----y~g~lYfl~~~tGs~~w~f~~~~-~--- 94 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAIL------GVRIECSAIVVGDFVVL-G-C-----YSGGLYFLCVKTGSQIWNFVILE-T--- 94 (354)
T ss_pred CceEEEecCCCCcEEeehhh------CceeeeeeEEECCEEEE-E-E-----ccCcEEEEEecchhheeeeeehh-h---
Confidence 3456778888764 88764 45888899999998544 3 2 33348999998876667766321 1
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEE
Q 002749 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQ 194 (885)
Q Consensus 152 ~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~ 194 (885)
-... +.+-...+.+| .|..|+ .++.+|+.+..-.|+
T Consensus 95 vk~~-a~~d~~~glIy-cgshd~-----~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 95 VKVR-AQCDFDGGLIY-CGSHDG-----NFYALDPKTYGCVYK 130 (354)
T ss_pred hccc-eEEcCCCceEE-EecCCC-----cEEEecccccceEEe
Confidence 1111 12233444666 565554 478888888654565
No 260
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=26.42 E-value=9.4e+02 Score=26.85 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=23.6
Q ss_pred cCcEEEEEecC-CcceEEEEeecCCCCCCccccEEEEEC---Cc-EEEEEecCCCCcccCcEEEEecCC
Q 002749 125 TDDLYVLDLTN-DKFKWHRVVVQGQGPGPRYGHVMDLVS---QR-YLVSVSGNDGKRVLSDAWALDTAQ 188 (885)
Q Consensus 125 ~~dl~~~D~~~-~~~~W~~v~~~~~~p~~R~~ht~~~~~---~~-~lyv~GG~~~~~~~ndv~~~d~~t 188 (885)
...+|++|+.+ ....|. +....... .... ..+++ ++ .=+++.|- ....+|++|+..
T Consensus 180 ~~~lyi~d~~t~G~l~~~-i~~~~~~~-gl~~--~~~~D~d~DG~~D~vYaGD----l~GnlwR~dl~~ 240 (335)
T PF05567_consen 180 GAALYILDADTTGALIKK-IDVPGGSG-GLSS--PAVVDSDGDGYVDRVYAGD----LGGNLWRFDLSS 240 (335)
T ss_dssp -EEEEEEETTT---EEEE-EEE--STT--EEE--EEEE-TTSSSEE-EEEEEE----TTSEEEEEE--T
T ss_pred CcEEEEEECCCCCceEEE-EecCCCCc-cccc--cEEEeccCCCeEEEEEEEc----CCCcEEEEECCC
Confidence 45789999998 654443 32211111 1211 12222 11 22333442 235799999985
No 261
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=25.92 E-value=2.9e+02 Score=31.78 Aligned_cols=221 Identities=15% Similarity=0.175 Sum_probs=99.0
Q ss_pred cEEEEECCCCc--EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCC-cceEEEEeecCCCCCC
Q 002749 76 SVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTND-KFKWHRVVVQGQGPGP 152 (885)
Q Consensus 76 dv~~yd~~t~~--W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~-~~~W~~v~~~~~~p~~ 152 (885)
.+.+.|+.|+. |+- .+. .+--+|+...+++...+.+-.... -+.++.+... ... .++ ..|.+
T Consensus 19 ~~~~~dl~TGt~~~~y---kg~--~~a~~~sl~~l~~~yllsaq~~rp-----~l~vw~i~k~~~~~-q~~----v~Pg~ 83 (476)
T KOG0646|consen 19 NCIVWDLRTGTSLLQY---KGS--YLAQAASLTALNNEYLLSAQLKRP-----LLHVWEILKKDQVV-QYI----VLPGP 83 (476)
T ss_pred ceeEEecCCCceeEEe---cCc--ccccchhhhhhchhheeeecccCc-----cccccccCchhhhh-hhc----ccccc
Confidence 46677777653 542 221 134456666676644444432211 2333333221 001 111 12332
Q ss_pred ccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccc---eEEEecCCEEEEEccCCCCC
Q 002749 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYA---TASARSDGMFLLCGGRDASG 229 (885)
Q Consensus 153 R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~h---sa~~~~~g~l~i~GG~~~~~ 229 (885)
-++.+....+.+++.|+..+ ++|.+-+.++ . -+... .+-|. +.....|+.+++.||-++.
T Consensus 84 --v~al~s~n~G~~l~ag~i~g-----~lYlWelssG--~--LL~v~-----~aHYQ~ITcL~fs~dgs~iiTgskDg~- 146 (476)
T KOG0646|consen 84 --VHALASSNLGYFLLAGTISG-----NLYLWELSSG--I--LLNVL-----SAHYQSITCLKFSDDGSHIITGSKDGA- 146 (476)
T ss_pred --eeeeecCCCceEEEeecccC-----cEEEEEeccc--c--HHHHH-----HhhccceeEEEEeCCCcEEEecCCCcc-
Confidence 34454555555555544544 5777777776 1 11110 11122 2335588999999996543
Q ss_pred CcccceEEEEcCCCCeeEEEeCCCCCCCcc---ceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCC
Q 002749 230 APLADAYGLLMHRNGQWEWTLAPGVAPSPR---YQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 230 ~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R---~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
. -+|.+...-. ......+.|+ ..|+..+.+ .-+=+||.+..--.......+-+||...+. .+.+.
T Consensus 147 -V--~vW~l~~lv~------a~~~~~~~p~~~f~~HtlsITD-l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--LLlti 214 (476)
T KOG0646|consen 147 -V--LVWLLTDLVS------ADNDHSVKPLHIFSDHTLSITD-LQIGSGGTNARLYTASEDRTIKLWDLSLGV--LLLTI 214 (476)
T ss_pred -E--EEEEEEeecc------cccCCCccceeeeccCcceeEE-EEecCCCccceEEEecCCceEEEEEeccce--eeEEE
Confidence 1 1232211100 0001122333 234433321 112244432211112224567788887773 33333
Q ss_pred cccCCCCCCCCCCCCCcCcccccceEEEEeC-CEEEEEcCCCCCCCCCceEEe
Q 002749 307 VTSSRTSKGHGEHDPSLELMRRCRHASASIG-VRIYIYGGLKGDILLDDFLVA 358 (885)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~-~~IyV~GG~~~~~~~~D~~~l 358 (885)
. +++.-+++++-. .+.+-+|+.+|.....+++.+
T Consensus 215 ~------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 215 T------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred e------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 2 255666666664 356666777776555544433
No 262
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=25.06 E-value=8.2e+02 Score=25.72 Aligned_cols=212 Identities=15% Similarity=0.168 Sum_probs=94.4
Q ss_pred CCcEEEecCCCCCC--cccCccEEEEE--CCEEEEEc--CcCCCCCccCcE-EEEEecCCcceEEEEeecC---CCCCCc
Q 002749 84 TRKWTRIRPAGEPP--SPRAAHAAAAV--GTMVVFQG--GIGPAGHSTDDL-YVLDLTNDKFKWHRVVVQG---QGPGPR 153 (885)
Q Consensus 84 t~~W~~l~~~g~~P--~~R~~hsa~~~--~~~lyv~G--G~~~~~~~~~dl-~~~D~~~~~~~W~~v~~~~---~~p~~R 153 (885)
-.+|+........+ ..+....+.+. ++.|+++. +..........+ +....+. --+|....... ......
T Consensus 29 G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~-G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 29 GKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDG-GKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp TTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESST-TSS-EEEEEEHHHCCCSCEE
T ss_pred CCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCC-CCCCCCccccccccccceec
Confidence 35799865543333 22333333333 67777775 222111111122 2444442 23588774211 111111
Q ss_pred cccE-EEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEE-EecCCEEEEEccCCCCCCc
Q 002749 154 YGHV-MDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATAS-ARSDGMFLLCGGRDASGAP 231 (885)
Q Consensus 154 ~~ht-~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~-~~~~g~l~i~GG~~~~~~~ 231 (885)
..+. ...+.++.+++..-............+..... .+|+...... +.....+.+. ...++.++++--.. ...
T Consensus 108 ~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G-~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~- 182 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGG-KTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND- 182 (275)
T ss_dssp CSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTT-SSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST-
T ss_pred cceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCC-ceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC-
Confidence 1222 23445566665521111111223333444333 3798875442 1223333443 35788888775432 111
Q ss_pred ccceEEEE-cCCCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCCcc
Q 002749 232 LADAYGLL-MHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVT 308 (885)
Q Consensus 232 l~dv~~~d-~~~~~~W~w~~~~~~~P~~R~~hs~~~~-~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~ 308 (885)
.++... .....+|+-...... |.+.....++.+ ++.++++...... . ....+++-.-...+|.....+..
T Consensus 183 --~~~~~~S~D~G~TWs~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~-r---~~l~l~~S~D~g~tW~~~~~i~~ 254 (275)
T PF13088_consen 183 --DIYISRSTDGGRTWSPPQPTNL-PNPNSSISLVRLSDGRLLLVYNNPDG-R---SNLSLYVSEDGGKTWSRPKTIDD 254 (275)
T ss_dssp --EEEEEEESSTTSS-EEEEEEEC-SSCCEEEEEEECTTSEEEEEEECSST-S---EEEEEEEECTTCEEEEEEEEEEE
T ss_pred --cEEEEEECCCCCcCCCceeccc-CcccCCceEEEcCCCCEEEEEECCCC-C---CceEEEEEeCCCCcCCccEEEeC
Confidence 333333 333446765442222 445544444444 5677777662111 1 12345555555789998776644
No 263
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=24.96 E-value=1e+02 Score=38.76 Aligned_cols=68 Identities=21% Similarity=0.110 Sum_probs=38.7
Q ss_pred cCCeEEEecCCCCHHHH----------------HHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-------------
Q 002749 580 RAPVKVFGDLHGQFGDL----------------MRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS------------- 630 (885)
Q Consensus 580 ~~~i~vvGDiHG~~~~L----------------~~il~~~g~~~~~~~~~~~~~vfLGDyVDRG~~s------------- 630 (885)
.-+|+-..||||++... ..+++...-... ..-+|..||++.--+..
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~-----NtLllD~GD~iQGSpl~~~~a~~~~~~~g~ 189 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENP-----NVVLVDNGDTIQGTPLGTYKAIVDPVEEGE 189 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCC-----CEEEEecCCCCCCCcccchhhhccccccCc
Confidence 34588899999996432 222333211111 12466699998754322
Q ss_pred -HHHHHHHHHHHhcCCCCEEEeccCCcc
Q 002749 631 -LETITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 631 -~evl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
.-++.+|-.|. .=....||||.
T Consensus 190 ~~P~i~amN~LG-----yDA~tLGNHEF 212 (814)
T PRK11907 190 QHPMYAALEALG-----FDAGTLGNHEF 212 (814)
T ss_pred chHHHHHHhccC-----CCEEEechhhc
Confidence 12555555553 34678899996
No 264
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=24.55 E-value=6.9e+02 Score=27.32 Aligned_cols=144 Identities=16% Similarity=0.205 Sum_probs=73.3
Q ss_pred CEEEEEcCCCCCCCCCCCCCCCccccccc-CcEEEEECCCC-----cEEEecCCCCCCcccCccEEEEECCEEEEEcCcC
Q 002749 46 PRLILFGGATAIEGGATSSAPGIRLAGVT-NSVHLYDVLTR-----KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIG 119 (885)
Q Consensus 46 ~~lylfGG~~~~~~~~~~~~~~~~~~~~~-~dv~~yd~~t~-----~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~ 119 (885)
..++++|-......... .. +.+++|++... +++.+.... .+-.-++++.+++++++.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~----------~~~Gri~v~~i~~~~~~~~~l~~i~~~~---~~g~V~ai~~~~~~lv~~~g-- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPE----------PSSGRILVFEISESPENNFKLKLIHSTE---VKGPVTAICSFNGRLVVAVG-- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-----------S-EEEEEEEECSS-----EEEEEEEEE---ESS-EEEEEEETTEEEEEET--
T ss_pred cCEEEEEeccccccccc----------ccCcEEEEEEEEcccccceEEEEEEEEe---ecCcceEhhhhCCEEEEeec--
Confidence 46777776544332210 23 78999999884 566554321 22345777888888777665
Q ss_pred CCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCC
Q 002749 120 PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPE 199 (885)
Q Consensus 120 ~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~ 199 (885)
+.+++|++..++ ++.+.. ....+-.-..+.+.++ ++++.--..+ -.++.|+.+.. +-..+...
T Consensus 107 ------~~l~v~~l~~~~-~l~~~~---~~~~~~~i~sl~~~~~-~I~vgD~~~s----v~~~~~~~~~~--~l~~va~d 169 (321)
T PF03178_consen 107 ------NKLYVYDLDNSK-TLLKKA---FYDSPFYITSLSVFKN-YILVGDAMKS----VSLLRYDEENN--KLILVARD 169 (321)
T ss_dssp ------TEEEEEEEETTS-SEEEEE---EE-BSSSEEEEEEETT-EEEEEESSSS----EEEEEEETTTE---EEEEEEE
T ss_pred ------CEEEEEEccCcc-cchhhh---eecceEEEEEEecccc-EEEEEEcccC----EEEEEEEccCC--EEEEEEec
Confidence 248889888754 355552 2333335555555565 5554332222 12345666443 34444322
Q ss_pred CCCCCCcccceEEEecCCEEEEEcc
Q 002749 200 GDRPSARMYATASARSDGMFLLCGG 224 (885)
Q Consensus 200 g~~P~~r~~hsa~~~~~g~l~i~GG 224 (885)
+.++..-++..+.++..++.+-
T Consensus 170 ---~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 170 ---YQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp ---SS-BEEEEEEEE-SSSEEEEEE
T ss_pred ---CCCccEEEEEEecCCcEEEEEc
Confidence 2344434444442333444443
No 265
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=24.40 E-value=5.1e+02 Score=27.33 Aligned_cols=136 Identities=15% Similarity=0.200 Sum_probs=68.4
Q ss_pred EEEEECCC-CcEEEecCCCCCCcccCccEEEE-E-CCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCc
Q 002749 77 VHLYDVLT-RKWTRIRPAGEPPSPRAAHAAAA-V-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 77 v~~yd~~t-~~W~~l~~~g~~P~~R~~hsa~~-~-~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R 153 (885)
+..|.... .+|+...... +.....+.+.+ . ++.|+++--.. ... .++..-....-.+|...... ..|...
T Consensus 136 ~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~---~~~~~~S~D~G~TWs~~~~~-~~~~~~ 208 (275)
T PF13088_consen 136 FVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND---DIYISRSTDGGRTWSPPQPT-NLPNPN 208 (275)
T ss_dssp EEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST---EEEEEEESSTTSS-EEEEEE-ECSSCC
T ss_pred EEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC---cEEEEEECCCCCcCCCceec-ccCccc
Confidence 34444444 4698876543 12244444444 2 56788776542 111 34444443333469886432 456666
Q ss_pred cccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCC-CCcccceEEEecCCEEEE
Q 002749 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRP-SARMYATASARSDGMFLL 221 (885)
Q Consensus 154 ~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P-~~r~~hsa~~~~~g~l~i 221 (885)
.+..++...++.++++...... ..+-...+... +..+|.........+ ..-.|.+++...|+.|+|
T Consensus 209 ~~~~~~~~~~g~~~~~~~~~~~-r~~l~l~~S~D-~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 209 SSISLVRLSDGRLLLVYNNPDG-RSNLSLYVSED-GGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEECTTSEEEEEEECSST-SEEEEEEEECT-TCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred CCceEEEcCCCCEEEEEECCCC-CCceEEEEEeC-CCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 6666666666667766663221 11212222222 234898764332112 124566666777888875
No 266
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=24.29 E-value=5.3e+02 Score=29.23 Aligned_cols=141 Identities=15% Similarity=0.118 Sum_probs=67.2
Q ss_pred cCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEE--CCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCC
Q 002749 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV--SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDR 202 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~--~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~ 202 (885)
.+.+.++|..+.+ .-.++.+ ...-|....+ +++++|+.+ .+ +.+-++|+.+.... .++.
T Consensus 15 ~~~v~viD~~t~~-~~~~i~~------~~~~h~~~~~s~Dgr~~yv~~-rd-----g~vsviD~~~~~~v-~~i~----- 75 (369)
T PF02239_consen 15 SGSVAVIDGATNK-VVARIPT------GGAPHAGLKFSPDGRYLYVAN-RD-----GTVSVIDLATGKVV-ATIK----- 75 (369)
T ss_dssp GTEEEEEETTT-S-EEEEEE-------STTEEEEEE-TT-SSEEEEEE-TT-----SEEEEEETTSSSEE-EEEE-----
T ss_pred CCEEEEEECCCCe-EEEEEcC------CCCceeEEEecCCCCEEEEEc-CC-----CeEEEEECCcccEE-EEEe-----
Confidence 4568899988743 1233321 1112554444 245888875 33 35889999997311 1222
Q ss_pred CCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCC---CCccceeEEEEECCEEEEEcccCC
Q 002749 203 PSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVA---PSPRYQHAAVFVGARLHVTGGALR 279 (885)
Q Consensus 203 P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~---P~~R~~hs~~~~~~~l~V~GG~~~ 279 (885)
............+|++++.+... .+.+-.+|..+...-..+...+.. +.+|...-.+......||+--
T Consensus 76 -~G~~~~~i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l--- 146 (369)
T PF02239_consen 76 -VGGNPRGIAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL--- 146 (369)
T ss_dssp --SSEEEEEEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE---
T ss_pred -cCCCcceEEEcCCCCEEEEEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE---
Confidence 22333445555676655555432 345666776655333444443322 234442222223555566522
Q ss_pred CCCCccCCCcEEEEECCCC
Q 002749 280 GGRAIEGEAAVAVLDTAAG 298 (885)
Q Consensus 280 ~~~~~~~~~~v~~yD~~t~ 298 (885)
.+...+|+.|....
T Consensus 147 -----kd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 147 -----KDTGEIWVVDYSDP 160 (369)
T ss_dssp -----TTTTEEEEEETTTS
T ss_pred -----ccCCeEEEEEeccc
Confidence 22567999987665
No 267
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=24.15 E-value=89 Score=33.76 Aligned_cols=39 Identities=28% Similarity=0.534 Sum_probs=26.7
Q ss_pred eEEEeccccCCCCChHHHH-HHHHHHHhcCCCCEEEeccCCccc
Q 002749 616 DYLFLGDYVDRGQHSLETI-TLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 616 ~~vfLGDyVDRG~~s~evl-~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
+++|+||+| |.-..+.| ..|-.||.+++-.+ +-.|=|..
T Consensus 2 ~ilfiGDi~--G~~Gr~~l~~~L~~lk~~~~~D~--vIaNgEn~ 41 (266)
T TIGR00282 2 KFLFIGDVY--GKAGRKIVKNNLPQLKSKYQADL--VIANGENT 41 (266)
T ss_pred eEEEEEecC--CHHHHHHHHHHHHHHHHhCCCCE--EEEcCccc
Confidence 799999999 44445554 56677888876554 44566665
No 268
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=24.03 E-value=1.3e+02 Score=34.50 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCeEEEEecccc
Q 002749 769 RVSDFCKRNKLQLIIRAHECV 789 (885)
Q Consensus 769 ~~~~fl~~~~l~~iiR~H~~~ 789 (885)
.++-+|+++++++.|-||+-.
T Consensus 239 ~L~PLL~ky~VdlYisGHDH~ 259 (394)
T PTZ00422 239 YLLPLLKDAQVDLYISGYDRN 259 (394)
T ss_pred HHHHHHHHcCcCEEEEccccc
Confidence 678899999999999999864
No 269
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=23.56 E-value=1.5e+02 Score=35.70 Aligned_cols=37 Identities=24% Similarity=0.091 Sum_probs=23.1
Q ss_pred eEEEeccccCCCCCh-----HHHHHHHHHHHhcCCCCEEEeccCCcc
Q 002749 616 DYLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 616 ~~vfLGDyVDRG~~s-----~evl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
-+|.-||.+...+.+ ...+.+|-++ +--.+..||||.
T Consensus 52 l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~-----g~Da~~lGNHEF 93 (550)
T TIGR01530 52 LVLHAGDAIIGTLYFTLFGGRADAALMNAA-----GFDFFTLGNHEF 93 (550)
T ss_pred EEEECCCCCCCccchhhcCCHHHHHHHhcc-----CCCEEEeccccc
Confidence 566799998654322 2234444444 344778899996
No 270
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=23.46 E-value=7.4e+02 Score=27.08 Aligned_cols=138 Identities=12% Similarity=0.111 Sum_probs=68.0
Q ss_pred CcEEEEecCCC---CeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCC
Q 002749 179 SDAWALDTAQK---PYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVA 255 (885)
Q Consensus 179 ndv~~~d~~t~---~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~ 255 (885)
..+..|++.+. .+++..+... .....-.+.+.. ++++++.-| +.++.|+...+. ++......
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~---~~~g~V~ai~~~-~~~lv~~~g--------~~l~v~~l~~~~--~l~~~~~~- 126 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST---EVKGPVTAICSF-NGRLVVAVG--------NKLYVYDLDNSK--TLLKKAFY- 126 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE---EESS-EEEEEEE-TTEEEEEET--------TEEEEEEEETTS--SEEEEEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEE---eecCcceEhhhh-CCEEEEeec--------CEEEEEEccCcc--cchhhhee-
Confidence 77899998884 1245544322 111112333333 666666555 245555555552 13333322
Q ss_pred CCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEE
Q 002749 256 PSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASAS 335 (885)
Q Consensus 256 P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~ 335 (885)
..+-+-.++...++.|+ +|-... .-.++.|+.+..+-..+..-.. ++...++..
T Consensus 127 ~~~~~i~sl~~~~~~I~-vgD~~~-------sv~~~~~~~~~~~l~~va~d~~------------------~~~v~~~~~ 180 (321)
T PF03178_consen 127 DSPFYITSLSVFKNYIL-VGDAMK-------SVSLLRYDEENNKLILVARDYQ------------------PRWVTAAEF 180 (321)
T ss_dssp -BSSSEEEEEEETTEEE-EEESSS-------SEEEEEEETTTE-EEEEEEESS-------------------BEEEEEEE
T ss_pred cceEEEEEEeccccEEE-EEEccc-------CEEEEEEEccCCEEEEEEecCC------------------CccEEEEEE
Confidence 12235556666677555 444211 2345667886666777665432 666666666
Q ss_pred e-CCEEEEEcCCCCCCCCCceEEeeCCC
Q 002749 336 I-GVRIYIYGGLKGDILLDDFLVAENSP 362 (885)
Q Consensus 336 ~-~~~IyV~GG~~~~~~~~D~~~ld~~~ 362 (885)
+ ++. .++++-. ...++.+...+
T Consensus 181 l~d~~-~~i~~D~----~gnl~~l~~~~ 203 (321)
T PF03178_consen 181 LVDED-TIIVGDK----DGNLFVLRYNP 203 (321)
T ss_dssp E-SSS-EEEEEET----TSEEEEEEE-S
T ss_pred ecCCc-EEEEEcC----CCeEEEEEECC
Confidence 6 555 4444422 23456665543
No 271
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=23.09 E-value=3.3e+02 Score=27.80 Aligned_cols=73 Identities=11% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCcccccccCcEEEEECCCCcEEEecCCCC--CCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcce
Q 002749 66 PGIRLAGVTNSVHLYDVLTRKWTRIRPAGE--PPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFK 139 (885)
Q Consensus 66 ~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~--~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~ 139 (885)
+...++.-.+++|++|..++.|..+..... .-.|+ .---.-..+.++++|...+.-..-.+||+|++.++..+
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK-~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~ 153 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK-YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLT 153 (200)
T ss_pred CCccccccceeEEEEecCCCceEEEEecCcccccCCc-eeEEecCCcEEEEEccccceEccCCeEEEEEccCCcee
No 272
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=23.09 E-value=1.2e+03 Score=26.95 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=56.0
Q ss_pred cEEEEECCEEEEEc---CcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccC
Q 002749 103 HAAAAVGTMVVFQG---GIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLS 179 (885)
Q Consensus 103 hsa~~~~~~lyv~G---G~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~n 179 (885)
+++.-+++.+-+.- -+...+...+++|++|-+.+ .--++ +|-.|..|-...- ..++ .+|+.--. -.+
T Consensus 380 f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~ln--vvGkl--tGl~~gERIYAvR-f~gd-v~yiVTfr----qtD 449 (603)
T COG4880 380 FDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLN--VVGKL--TGLAPGERIYAVR-FVGD-VLYIVTFR----QTD 449 (603)
T ss_pred ccCcccceEEEEEeeecccccCCCccceeEEEcCCCc--EEEEE--eccCCCceEEEEE-EeCc-eEEEEEEe----ccC
Confidence 34444444444432 22344567789999998763 23333 4667777766433 3343 55554332 234
Q ss_pred cEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccC
Q 002749 180 DAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGR 225 (885)
Q Consensus 180 dv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~ 225 (885)
-+++.|++.. +.....|+.-.|....-.--++++.++=.|-.
T Consensus 450 PlfviDlsNP----enPkvlGeLKIPGfS~YLHpigen~~lGvG~~ 491 (603)
T COG4880 450 PLFVIDLSNP----ENPKVLGELKIPGFSEYLHPIGENRLLGVGAY 491 (603)
T ss_pred ceEEEEcCCC----CCCceeEEEecCCchhhccccCCCcEEEeecc
Confidence 5788888764 22222333334433322333466666555543
No 273
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=22.77 E-value=5.3e+02 Score=26.01 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=59.2
Q ss_pred ccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCC----------------------
Q 002749 551 RFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPST---------------------- 608 (885)
Q Consensus 551 ~~~~~~~~~~~l~~~~~~~~~~e~~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~---------------------- 608 (885)
...+++++|.+-|.+..+.+.++-.= ...++||=++|.+--+-.++..+.++.+
T Consensus 9 evLisee~I~~ri~ela~~I~~~y~g----~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~ 84 (178)
T COG0634 9 EVLISEEQIKARIKELAAQITEDYGG----KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKIL 84 (178)
T ss_pred eEeeCHHHHHHHHHHHHHHHHHhhCC----CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEe
Confidence 46789999998888877776654321 5788999999999888888777766532
Q ss_pred ---CCCcceeeEEEeccccCCCCChHHHHHHHH
Q 002749 609 ---AGDITYIDYLFLGDYVDRGQHSLETITLLL 638 (885)
Q Consensus 609 ---~~~~~~~~~vfLGDyVDRG~~s~evl~ll~ 638 (885)
+.++...+++.+=|++|-|.-=-.+..+|.
T Consensus 85 kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~ 117 (178)
T COG0634 85 KDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLK 117 (178)
T ss_pred cccccCCCCCeEEEEecccccChhHHHHHHHHH
Confidence 112233479999999998865444444443
No 274
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=22.62 E-value=1.5e+03 Score=28.03 Aligned_cols=182 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEEC--CEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCC
Q 002749 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVG--TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 75 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~--~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~ 152 (885)
++|..+|+...+--+-=+. +.|..+++++++ +.|++.|+. ..-++++++..+ |.....
T Consensus 414 GtVRAwDlkRYrNfRTft~----P~p~QfscvavD~sGelV~AG~~-----d~F~IfvWS~qT-----------GqllDi 473 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTS----PEPIQFSCVAVDPSGELVCAGAQ-----DSFEIFVWSVQT-----------GQLLDI 473 (893)
T ss_pred CeEEeeeecccceeeeecC----CCceeeeEEEEcCCCCEEEeecc-----ceEEEEEEEeec-----------Ceeeeh
Q ss_pred ccccEEEEEC-----CcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCC-------CCCcccceEEEecCCEEE
Q 002749 153 RYGHVMDLVS-----QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDR-------PSARMYATASARSDGMFL 220 (885)
Q Consensus 153 R~~ht~~~~~-----~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~-------P~~r~~hsa~~~~~g~l~ 220 (885)
..||-..+.. .+.+++-|.++.. |-.+|+-. +|..+++..-. -.|-..--+++..+|.|-
T Consensus 474 LsGHEgPVs~l~f~~~~~~LaS~SWDkT-----VRiW~if~---s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqIt 545 (893)
T KOG0291|consen 474 LSGHEGPVSGLSFSPDGSLLASGSWDKT-----VRIWDIFS---SSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQIT 545 (893)
T ss_pred hcCCCCcceeeEEccccCeEEeccccce-----EEEEEeec---cCceeeeEeeccceeEEEEcCCCCeEEEEEecceEE
Q ss_pred EEccCCCCCC----cccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEEC
Q 002749 221 LCGGRDASGA----PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDT 295 (885)
Q Consensus 221 i~GG~~~~~~----~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~-~~~l~V~GG~~~~~~~~~~~~~v~~yD~ 295 (885)
++--...-+. --.|+-.=+...+ ..+..... ...+.-+.++- +|+.++.||. .+.+.+||.
T Consensus 546 f~d~~~~~q~~~IdgrkD~~~gR~~~D---~~ta~~sa--~~K~Ftti~ySaDG~~IlAgG~---------sn~iCiY~v 611 (893)
T KOG0291|consen 546 FFDIKEAVQVGSIDGRKDLSGGRKETD---RITAENSA--KGKTFTTICYSADGKCILAGGE---------SNSICIYDV 611 (893)
T ss_pred EEEhhhceeeccccchhhccccccccc---eeehhhcc--cCCceEEEEEcCCCCEEEecCC---------cccEEEEEC
Q ss_pred CCC
Q 002749 296 AAG 298 (885)
Q Consensus 296 ~t~ 298 (885)
.+.
T Consensus 612 ~~~ 614 (893)
T KOG0291|consen 612 PEG 614 (893)
T ss_pred chh
No 275
>PLN00181 protein SPA1-RELATED; Provisional
Probab=22.42 E-value=1.6e+03 Score=28.15 Aligned_cols=22 Identities=23% Similarity=0.074 Sum_probs=15.5
Q ss_pred CCEEEEEcccCCCCCCccCCCcEEEEECCCC
Q 002749 268 GARLHVTGGALRGGRAIEGEAAVAVLDTAAG 298 (885)
Q Consensus 268 ~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~ 298 (885)
++.++++|+.+ ..+.+||+.+.
T Consensus 629 ~g~~latgs~d---------g~I~iwD~~~~ 650 (793)
T PLN00181 629 SGRSLAFGSAD---------HKVYYYDLRNP 650 (793)
T ss_pred CCCEEEEEeCC---------CeEEEEECCCC
Confidence 46778887742 35889998764
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=22.14 E-value=1.3e+03 Score=27.00 Aligned_cols=192 Identities=8% Similarity=0.042 Sum_probs=94.4
Q ss_pred ccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCC
Q 002749 73 VTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 73 ~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~ 152 (885)
-+.|+|+++.+.++-++++-.| .+-..-+...-++.|+|.--...+-.....+|..+.+. .+..++ +..
T Consensus 105 ~taDly~v~~e~Ge~kRiTyfG---r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg--~~~e~L------nlG 173 (668)
T COG4946 105 QTADLYVVPSEDGEAKRITYFG---RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDG--IKTEPL------NLG 173 (668)
T ss_pred ccccEEEEeCCCCcEEEEEEec---cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCC--ceeeec------cCC
Confidence 4689999999999999998665 11111222223567777554322222234455555544 223333 111
Q ss_pred ccccEEEEECCcEEEEEecCCC---------CcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEc
Q 002749 153 RYGHVMDLVSQRYLVSVSGNDG---------KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCG 223 (885)
Q Consensus 153 R~~ht~~~~~~~~lyv~GG~~~---------~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~G 223 (885)
-.+..++.++.+ |+|-+.- .+.-..+|+=..... +++++-.+ +..- +.-.+..+++|...
T Consensus 174 --pathiv~~dg~i-vigRntydLP~WK~YkGGtrGklWis~d~g~--tFeK~vdl---~~~v---S~PmIV~~RvYFls 242 (668)
T COG4946 174 --PATHIVIKDGII-VIGRNTYDLPHWKGYKGGTRGKLWISSDGGK--TFEKFVDL---DGNV---SSPMIVGERVYFLS 242 (668)
T ss_pred --ceeeEEEeCCEE-EEccCcccCcccccccCCccceEEEEecCCc--ceeeeeec---CCCc---CCceEEcceEEEEe
Confidence 123345566644 4554321 122345666544444 45555433 1111 11123355677766
Q ss_pred cCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEc
Q 002749 224 GRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDR 303 (885)
Q Consensus 224 G~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v 303 (885)
...+.+ .+|..|..-. .-.+-.. .--|..--+-.+|+-+||-- ..++|.|||++..-+++
T Consensus 243 D~eG~G----nlYSvdldGk---DlrrHTn---FtdYY~R~~nsDGkrIvFq~----------~GdIylydP~td~lekl 302 (668)
T COG4946 243 DHEGVG----NLYSVDLDGK---DLRRHTN---FTDYYPRNANSDGKRIVFQN----------AGDIYLYDPETDSLEKL 302 (668)
T ss_pred cccCcc----ceEEeccCCc---hhhhcCC---chhccccccCCCCcEEEEec----------CCcEEEeCCCcCcceee
Confidence 655543 3554444322 1111111 11111122223666666632 24699999999988877
Q ss_pred cCC
Q 002749 304 NGL 306 (885)
Q Consensus 304 ~~~ 306 (885)
.--
T Consensus 303 dI~ 305 (668)
T COG4946 303 DIG 305 (668)
T ss_pred ecC
Confidence 643
No 277
>smart00284 OLF Olfactomedin-like domains.
Probab=22.05 E-value=1e+03 Score=25.63 Aligned_cols=167 Identities=16% Similarity=0.056 Sum_probs=78.6
Q ss_pred CCEEEEEcCcCCCCCccCcEEEEEecCC--cceEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEec
Q 002749 109 GTMVVFQGGIGPAGHSTDDLYVLDLTND--KFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDT 186 (885)
Q Consensus 109 ~~~lyv~GG~~~~~~~~~dl~~~D~~~~--~~~W~~v~~~~~~p~~R~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~ 186 (885)
++++|+..+.+ ...+.++.|.-..+ ..++.+. -.+|.+-.|...+++++ .+|.--. ..+++.+||+
T Consensus 34 ~~~~wv~~~~~---~~~~~v~ey~~~~~f~~~~~~~~---~~Lp~~~~GtG~VVYng-slYY~~~-----~s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNT---RVLRSVREYSSMSDFQMGKNPTD---HPLPHAGQGTGVVVYNG-SLYFNKF-----NSHDICRFDL 101 (255)
T ss_pred CceEEEEcccc---CCCcEEEEecCHHHHhccCCceE---EECCCccccccEEEECc-eEEEEec-----CCccEEEEEC
Confidence 57888887653 22344666643221 0112221 24566677777777776 4553221 1367999999
Q ss_pred CCCCee-EEEcCCCC---CCCCCcccceEE---EecCCEEEEEccCCCCCCcccceEEEEcCCCC-eeEEEeCCCCCCCc
Q 002749 187 AQKPYV-WQRLNPEG---DRPSARMYATAS---ARSDGMFLLCGGRDASGAPLADAYGLLMHRNG-QWEWTLAPGVAPSP 258 (885)
Q Consensus 187 ~t~~~~-W~~i~~~g---~~P~~r~~hsa~---~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~-~W~w~~~~~~~P~~ 258 (885)
.++... +..++..+ ..|-....++-+ +-.+|..+|+......+.. -+-.++..+-. .-+|... .+
T Consensus 102 ~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~i--vvSkLnp~tL~ve~tW~T~-----~~ 174 (255)
T smart00284 102 TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKI--VISKLNPATLTIENTWITT-----YN 174 (255)
T ss_pred CCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCE--EEEeeCcccceEEEEEEcC-----CC
Confidence 998543 44443211 111111122222 2244555554443332221 11233322210 0034442 22
Q ss_pred ccee-EEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCc
Q 002749 259 RYQH-AAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (885)
Q Consensus 259 R~~h-s~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (885)
+... .+..+-|.||++-...... ..-.++||+.+.+
T Consensus 175 k~sa~naFmvCGvLY~~~s~~~~~-----~~I~yayDt~t~~ 211 (255)
T smart00284 175 KRSASNAFMICGILYVTRSLGSKG-----EKVFYAYDTNTGK 211 (255)
T ss_pred cccccccEEEeeEEEEEccCCCCC-----cEEEEEEECCCCc
Confidence 2222 3334578999984321111 2336789999876
No 278
>PRK03629 tolB translocation protein TolB; Provisional
Probab=20.76 E-value=1.3e+03 Score=26.49 Aligned_cols=191 Identities=10% Similarity=0.110 Sum_probs=91.4
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCc
Q 002749 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 75 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~-~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R 153 (885)
..+|++|+.+++-+.+..... ........- +.+|++..... ...++|++|+.+.. ..++.. + ..
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~----~~~~~~~SPDG~~La~~~~~~----g~~~I~~~d~~tg~--~~~lt~-~--~~-- 287 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPR----HNGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQ--IRQVTD-G--RS-- 287 (429)
T ss_pred cEEEEEECCCCCeEEccCCCC----CcCCeEECCCCCEEEEEEcCC----CCcEEEEEECCCCC--EEEccC-C--CC--
Confidence 568999998887776653211 011111122 34565543321 12359999998854 555521 1 11
Q ss_pred cccEEEEECCcEEEEEecCCCCcccCcEEEEecCCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCccc
Q 002749 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (885)
Q Consensus 154 ~~ht~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~ 233 (885)
.........++..++|....+. ..++|.+|+.+. .-..+...+ . .........++..+++.+.... ..
T Consensus 288 ~~~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g--~~~~lt~~~----~-~~~~~~~SpDG~~Ia~~~~~~g---~~ 355 (429)
T PRK03629 288 NNTEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGG--APQRITWEG----S-QNQDADVSSDGKFMVMVSSNGG---QQ 355 (429)
T ss_pred CcCceEECCCCCEEEEEeCCCC--CceEEEEECCCC--CeEEeecCC----C-CccCEEECCCCCEEEEEEccCC---Cc
Confidence 1112223333343444443221 247899999876 455553321 1 1122334456655555443221 24
Q ss_pred ceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCcEEEcc
Q 002749 234 DAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 234 dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~l~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~ 304 (885)
+++.++..+. .+..+.... ........-+++.+++.+..+. ...+++.+.....=+.+.
T Consensus 356 ~I~~~dl~~g---~~~~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~------~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 356 HIAKQDLATG---GVQVLTDTF---LDETPSIAPNGTMVIYSSSQGM------GSVLNLVSTDGRFKARLP 414 (429)
T ss_pred eEEEEECCCC---CeEEeCCCC---CCCCceECCCCCEEEEEEcCCC------ceEEEEEECCCCCeEECc
Confidence 6888887655 333333211 1111112236777777664332 124666776554434443
No 279
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=20.42 E-value=1.3e+02 Score=36.21 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=13.7
Q ss_pred HHHHHc---CCeEEEEecccc
Q 002749 772 DFCKRN---KLQLIIRAHECV 789 (885)
Q Consensus 772 ~fl~~~---~l~~iiR~H~~~ 789 (885)
++.++. ++++||=||+-.
T Consensus 236 ~la~~~~~~~IDvIlgGHsH~ 256 (551)
T PRK09558 236 EMARSLPAGGLDMIVGGHSQD 256 (551)
T ss_pred HHHHhCCccCceEEEeCCCCc
Confidence 455555 799999999863
No 280
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=20.35 E-value=3.7e+02 Score=23.28 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=47.1
Q ss_pred cCCeEEEecCCCCHHHHHHHHHHhCCC-CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCCEEEeccCC
Q 002749 580 RAPVKVFGDLHGQFGDLMRLFDEYGFP-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 655 (885)
Q Consensus 580 ~~~i~vvGDiHG~~~~L~~il~~~g~~-~~~~~~~~~~~vfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 655 (885)
...+.|+=|---+.+.+..+++.+..- +.. ..++.+|+.-|+|....+....+..+...+...+++...|+
T Consensus 11 ~~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~-----~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 82 (91)
T PF02875_consen 11 PNGPTVIDDYAHNPDSIRALLEALKELYPKG-----RIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDNP 82 (91)
T ss_dssp ETTEEEEEET--SHHHHHHHHHHHHHHCTTS-----EEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSBT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHHHhccCC-----cEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCCC
Confidence 345777888777888888887776421 111 16788999999998888877777777666666665555543
No 281
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=20.24 E-value=1.1e+03 Score=25.25 Aligned_cols=160 Identities=12% Similarity=0.069 Sum_probs=78.4
Q ss_pred CCcccCccEEEEECCEEEEEcCcCCCCCccCcEEEEEecCCcce-EEEEeecCC---CCCCccccE---EEEECCcEEEE
Q 002749 96 PPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFK-WHRVVVQGQ---GPGPRYGHV---MDLVSQRYLVS 168 (885)
Q Consensus 96 ~P~~R~~hsa~~~~~~lyv~GG~~~~~~~~~dl~~~D~~~~~~~-W~~v~~~~~---~p~~R~~ht---~~~~~~~~lyv 168 (885)
+|.+-.+.+.++.++.+|+--. .+.++.+||+.++... |..++..+- .|-...+++ .++-.++..+|
T Consensus 65 Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvI 138 (250)
T PF02191_consen 65 LPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVI 138 (250)
T ss_pred EeceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEE
Confidence 4466677788888998888544 4677999999997755 655532221 122222222 22234444444
Q ss_pred EecCCCCcccCcEEEEecCCCC--eeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCee
Q 002749 169 VSGNDGKRVLSDAWALDTAQKP--YVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQW 246 (885)
Q Consensus 169 ~GG~~~~~~~ndv~~~d~~t~~--~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W 246 (885)
+.-.+.... =-|-++|+.+-. .+|..-- +.+....+.++ =|.||+.-..+... ..-.+.||..++
T Consensus 139 Yat~~~~g~-ivvskld~~tL~v~~tw~T~~-----~k~~~~naFmv--CGvLY~~~s~~~~~--~~I~yafDt~t~--- 205 (250)
T PF02191_consen 139 YATEDNNGN-IVVSKLDPETLSVEQTWNTSY-----PKRSAGNAFMV--CGVLYATDSYDTRD--TEIFYAFDTYTG--- 205 (250)
T ss_pred EecCCCCCc-EEEEeeCcccCceEEEEEecc-----CchhhcceeeE--eeEEEEEEECCCCC--cEEEEEEECCCC---
Confidence 443322211 112334444321 1565321 23333333222 24577766554332 334567787765
Q ss_pred EEEeCCCCCCCccc-eeEEEEE---CCEEEEEc
Q 002749 247 EWTLAPGVAPSPRY-QHAAVFV---GARLHVTG 275 (885)
Q Consensus 247 ~w~~~~~~~P~~R~-~hs~~~~---~~~l~V~G 275 (885)
+-..+ ..+-..++ .+++.-. +.+||+.-
T Consensus 206 ~~~~~-~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 206 KEEDV-SIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred ceece-eeeeccccCceEeeeECCCCCeEEEEE
Confidence 22222 22222333 3344433 56888873
No 282
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.20 E-value=1.7e+03 Score=27.64 Aligned_cols=189 Identities=20% Similarity=0.113 Sum_probs=0.0
Q ss_pred EEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEE
Q 002749 34 TLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVV 113 (885)
Q Consensus 34 s~t~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hsa~~~~~~ly 113 (885)
+.++. +++++++-|+. +.+-+++..+.+..+--+.+ +.+++..+.+.-|
T Consensus 378 sl~vS------~d~~~~~Sga~-------------------~SikiWn~~t~kciRTi~~~------y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 378 SLCVS------SDSILLASGAG-------------------ESIKIWNRDTLKCIRTITCG------YILASKFVPGDRY 426 (888)
T ss_pred EEEee------cCceeeeecCC-------------------CcEEEEEccCcceeEEeccc------cEEEEEecCCCce
Q ss_pred EEcCcCCCCCccCcEEEEEecCCcceEEEEeecCCCCCCccccEEEEE-----CCcEEEEEecCCCCcccCcEEEEec--
Q 002749 114 FQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-----SQRYLVSVSGNDGKRVLSDAWALDT-- 186 (885)
Q Consensus 114 v~GG~~~~~~~~~dl~~~D~~~~~~~W~~v~~~~~~p~~R~~ht~~~~-----~~~~lyv~GG~~~~~~~ndv~~~d~-- 186 (885)
|+=|...+. +.+||+.+ +..-..+..|..+.+ .++.-+|.||.+..-.+=|+..-+-
T Consensus 427 Iv~G~k~Ge-----l~vfdlaS-----------~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 427 IVLGTKNGE-----LQVFDLAS-----------ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred EEEeccCCc-----eEEEEeeh-----------hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Q ss_pred -CCCCeeEEEcCCCCCCCCCcccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEE
Q 002749 187 -AQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAV 265 (885)
Q Consensus 187 -~t~~~~W~~i~~~g~~P~~r~~hsa~~~~~g~l~i~GG~~~~~~~l~dv~~~d~~~~~~W~w~~~~~~~P~~R~~hs~~ 265 (885)
.++ +--++......-.+-.--++.+..|++++..|=-+. .-.+|.+|..+- -...|+|..-
T Consensus 491 gt~~--k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn----TVkVyflDtlKF------------flsLYGHkLP 552 (888)
T KOG0306|consen 491 GTQK--KVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN----TVKVYFLDTLKF------------FLSLYGHKLP 552 (888)
T ss_pred cccc--eeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC----eEEEEEecceee------------eeeecccccc
Q ss_pred EE------CCEEEEEcccCCCCCCccCCCcEEEEE
Q 002749 266 FV------GARLHVTGGALRGGRAIEGEAAVAVLD 294 (885)
Q Consensus 266 ~~------~~~l~V~GG~~~~~~~~~~~~~v~~yD 294 (885)
++ +++++|-|+.+.+-. +|=+|
T Consensus 553 V~smDIS~DSklivTgSADKnVK-------iWGLd 580 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVTGSADKNVK-------IWGLD 580 (888)
T ss_pred eeEEeccCCcCeEEeccCCCceE-------Eeccc
Done!