Query 002750
Match_columns 885
No_of_seqs 499 out of 4092
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-88 2.9E-93 788.5 47.4 829 3-870 2-866 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.1E-57 4.5E-62 559.7 43.3 650 178-883 181-904 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.6E-43 1.4E-47 370.4 16.8 278 186-463 1-283 (287)
4 KOG0444 Cytoskeletal regulator 99.9 1.1E-24 2.4E-29 228.5 -4.3 307 537-882 55-369 (1255)
5 KOG4194 Membrane glycoprotein 99.8 3E-22 6.6E-27 209.3 3.8 301 555-874 123-439 (873)
6 PLN00113 leucine-rich repeat r 99.8 6.7E-21 1.4E-25 236.7 15.4 308 556-883 139-486 (968)
7 PLN00113 leucine-rich repeat r 99.8 2.1E-20 4.6E-25 232.2 15.9 307 554-883 185-534 (968)
8 KOG4194 Membrane glycoprotein 99.8 3.8E-21 8.3E-26 201.2 2.8 304 556-881 77-425 (873)
9 KOG0444 Cytoskeletal regulator 99.8 4E-21 8.6E-26 202.1 -5.0 282 581-878 49-342 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 3.2E-19 6.9E-24 179.0 -7.3 130 583-720 110-268 (565)
11 PLN03210 Resistant to P. syrin 99.6 1.2E-15 2.6E-20 189.7 16.0 282 555-864 609-905 (1153)
12 KOG0618 Serine/threonine phosp 99.6 1.3E-16 2.9E-21 176.8 -1.3 300 558-883 46-438 (1081)
13 KOG0472 Leucine-rich repeat pr 99.5 2.5E-17 5.5E-22 165.5 -9.9 80 581-668 62-142 (565)
14 PRK04841 transcriptional regul 99.5 1.7E-12 3.7E-17 160.9 26.5 297 180-516 13-333 (903)
15 PRK15387 E3 ubiquitin-protein 99.5 9.8E-14 2.1E-18 159.6 11.3 95 757-864 362-457 (788)
16 KOG0618 Serine/threonine phosp 99.4 4.6E-15 9.9E-20 164.8 -4.5 69 581-657 258-327 (1081)
17 COG2909 MalT ATP-dependent tra 99.4 1.3E-11 2.9E-16 137.4 21.3 300 180-517 18-340 (894)
18 PRK00411 cdc6 cell division co 99.4 1.3E-10 2.9E-15 128.9 28.8 313 178-505 27-375 (394)
19 PRK15370 E3 ubiquitin-protein 99.3 2.1E-12 4.6E-17 149.9 8.3 140 704-864 283-427 (754)
20 TIGR02928 orc1/cdc6 family rep 99.3 5.6E-10 1.2E-14 122.6 26.3 299 179-492 13-351 (365)
21 KOG4237 Extracellular matrix p 99.3 8.5E-14 1.9E-18 140.4 -4.8 268 578-864 82-358 (498)
22 PRK15387 E3 ubiquitin-protein 99.3 2.6E-11 5.6E-16 139.9 12.5 247 587-883 201-456 (788)
23 PRK15370 E3 ubiquitin-protein 99.2 1.2E-11 2.7E-16 143.6 9.0 234 557-857 199-438 (754)
24 TIGR03015 pepcterm_ATPase puta 99.2 7.8E-10 1.7E-14 115.9 20.4 185 203-390 42-242 (269)
25 cd00116 LRR_RI Leucine-rich re 99.2 2E-12 4.3E-17 139.6 -2.5 66 580-651 16-91 (319)
26 PF01637 Arch_ATPase: Archaeal 99.2 4.2E-10 9.2E-15 115.4 14.7 197 183-385 1-233 (234)
27 KOG0617 Ras suppressor protein 99.1 3E-12 6.6E-17 114.2 -3.1 76 585-668 31-107 (264)
28 KOG0617 Ras suppressor protein 99.1 1.7E-12 3.7E-17 115.8 -4.7 154 550-718 26-187 (264)
29 TIGR00635 ruvB Holliday juncti 99.1 2.7E-09 6E-14 113.8 18.3 277 181-492 4-290 (305)
30 PRK00080 ruvB Holliday junctio 99.1 2.8E-09 6E-14 114.4 16.3 278 180-492 24-311 (328)
31 cd00116 LRR_RI Leucine-rich re 99.1 1.4E-11 3.1E-16 132.9 -2.2 19 613-631 76-94 (319)
32 PF05729 NACHT: NACHT domain 99.0 1.2E-09 2.6E-14 105.3 9.8 142 205-355 1-163 (166)
33 KOG3207 Beta-tubulin folding c 99.0 7.1E-11 1.5E-15 121.3 -1.2 109 753-864 218-338 (505)
34 PTZ00112 origin recognition co 99.0 9.3E-08 2E-12 108.1 22.6 296 179-492 753-1087(1164)
35 KOG4658 Apoptotic ATPase [Sign 98.9 5.4E-10 1.2E-14 132.1 4.9 299 550-869 516-847 (889)
36 KOG4237 Extracellular matrix p 98.9 1.4E-10 3E-15 117.6 -1.1 262 588-877 68-348 (498)
37 COG3899 Predicted ATPase [Gene 98.9 5.5E-08 1.2E-12 115.8 18.0 311 183-513 2-384 (849)
38 KOG1259 Nischarin, modulator o 98.8 2.2E-09 4.7E-14 104.8 3.1 135 700-845 280-415 (490)
39 COG3903 Predicted ATPase [Gene 98.8 2.4E-08 5.2E-13 103.6 9.8 291 203-517 13-316 (414)
40 PRK06893 DNA replication initi 98.8 9.5E-08 2.1E-12 96.5 13.7 150 204-386 39-203 (229)
41 COG1474 CDC6 Cdc6-related prot 98.7 2.6E-06 5.7E-11 91.2 23.5 289 180-492 16-335 (366)
42 PRK14961 DNA polymerase III su 98.7 9.4E-07 2E-11 95.9 18.6 193 181-383 16-217 (363)
43 PF13173 AAA_14: AAA domain 98.7 7.3E-08 1.6E-12 87.7 8.3 121 204-347 2-127 (128)
44 PRK07003 DNA polymerase III su 98.7 1.7E-06 3.6E-11 97.9 20.2 198 181-388 16-223 (830)
45 KOG3207 Beta-tubulin folding c 98.7 6.6E-09 1.4E-13 107.2 1.1 179 700-880 142-331 (505)
46 PRK13342 recombination factor 98.6 3.7E-07 8.1E-12 101.0 14.9 176 181-388 12-198 (413)
47 COG2256 MGS1 ATPase related to 98.6 2.8E-07 6E-12 95.1 12.2 171 177-382 26-208 (436)
48 PF13401 AAA_22: AAA domain; P 98.6 1.6E-07 3.6E-12 86.2 9.3 114 203-323 3-125 (131)
49 PRK12402 replication factor C 98.6 1.1E-06 2.3E-11 95.6 17.1 198 181-385 15-225 (337)
50 PRK05564 DNA polymerase III su 98.6 2E-06 4.3E-11 91.7 18.5 176 182-384 5-188 (313)
51 PF14580 LRR_9: Leucine-rich r 98.6 6.5E-09 1.4E-13 98.2 -0.8 112 753-868 15-129 (175)
52 KOG0532 Leucine-rich repeat (L 98.6 2.7E-09 5.9E-14 113.3 -4.3 96 768-868 155-250 (722)
53 PRK12323 DNA polymerase III su 98.6 1.3E-06 2.8E-11 97.4 16.2 198 181-385 16-224 (700)
54 PRK04195 replication factor C 98.6 5.1E-06 1.1E-10 94.0 21.5 184 181-391 14-207 (482)
55 PRK14949 DNA polymerase III su 98.6 1.6E-06 3.4E-11 100.2 17.2 195 181-386 16-220 (944)
56 TIGR03420 DnaA_homol_Hda DnaA 98.6 9.3E-07 2E-11 89.9 13.9 166 187-387 23-202 (226)
57 PRK06645 DNA polymerase III su 98.5 3.1E-06 6.6E-11 94.3 18.5 196 181-383 21-226 (507)
58 PRK14960 DNA polymerase III su 98.5 2.3E-06 5E-11 95.8 17.4 194 181-384 15-217 (702)
59 PRK14963 DNA polymerase III su 98.5 3.9E-06 8.4E-11 94.0 18.0 193 181-383 14-214 (504)
60 PTZ00202 tuzin; Provisional 98.5 1.4E-05 3E-10 84.3 19.8 169 177-355 258-434 (550)
61 PF13191 AAA_16: AAA ATPase do 98.5 2.9E-07 6.3E-12 90.4 7.0 47 182-228 1-48 (185)
62 PRK14956 DNA polymerase III su 98.5 4.4E-06 9.6E-11 91.0 16.3 195 181-383 18-219 (484)
63 PRK14957 DNA polymerase III su 98.5 6.3E-06 1.4E-10 92.4 17.9 183 181-387 16-222 (546)
64 PF14580 LRR_9: Leucine-rich r 98.4 1.8E-07 4E-12 88.4 4.8 129 585-740 17-148 (175)
65 PRK08084 DNA replication initi 98.4 4.4E-06 9.6E-11 84.7 14.4 151 203-386 44-209 (235)
66 TIGR02397 dnaX_nterm DNA polym 98.4 1.1E-05 2.4E-10 88.4 18.7 182 181-387 14-219 (355)
67 PRK14955 DNA polymerase III su 98.4 5.5E-06 1.2E-10 91.1 16.1 201 181-385 16-227 (397)
68 PRK07994 DNA polymerase III su 98.4 5.3E-06 1.2E-10 94.4 16.2 196 181-386 16-220 (647)
69 PLN03025 replication factor C 98.4 5.4E-06 1.2E-10 88.6 15.4 181 181-383 13-197 (319)
70 PRK00440 rfc replication facto 98.4 9.7E-06 2.1E-10 87.3 17.6 180 181-384 17-201 (319)
71 PRK14962 DNA polymerase III su 98.4 1.2E-05 2.7E-10 89.3 18.4 199 181-390 14-223 (472)
72 PRK09112 DNA polymerase III su 98.4 6E-06 1.3E-10 88.2 15.3 200 178-386 20-240 (351)
73 cd00009 AAA The AAA+ (ATPases 98.4 2.9E-06 6.3E-11 79.7 11.6 123 184-325 1-131 (151)
74 KOG1909 Ran GTPase-activating 98.4 1.5E-08 3.2E-13 101.8 -4.3 246 578-864 21-310 (382)
75 PRK08691 DNA polymerase III su 98.4 6.9E-06 1.5E-10 93.0 16.1 192 181-385 16-219 (709)
76 PRK14951 DNA polymerase III su 98.4 1.2E-05 2.6E-10 91.5 18.0 198 181-385 16-224 (618)
77 PRK07940 DNA polymerase III su 98.4 1.2E-05 2.6E-10 87.1 17.2 189 181-385 5-212 (394)
78 KOG1909 Ran GTPase-activating 98.4 9.5E-08 2.1E-12 96.2 0.9 250 552-816 25-310 (382)
79 PRK08727 hypothetical protein; 98.4 6E-06 1.3E-10 83.6 13.9 147 204-383 41-201 (233)
80 PF00308 Bac_DnaA: Bacterial d 98.4 1.1E-05 2.4E-10 80.6 15.6 185 180-386 8-208 (219)
81 PF05496 RuvB_N: Holliday junc 98.4 4.5E-06 9.8E-11 80.6 12.2 178 180-390 23-225 (233)
82 PRK14958 DNA polymerase III su 98.4 9.7E-06 2.1E-10 91.1 16.9 195 181-385 16-219 (509)
83 PRK05896 DNA polymerase III su 98.4 1E-05 2.3E-10 90.7 16.5 198 181-388 16-223 (605)
84 PRK07471 DNA polymerase III su 98.3 1.8E-05 3.8E-10 85.1 17.7 199 178-386 16-238 (365)
85 PRK14964 DNA polymerase III su 98.3 1.6E-05 3.5E-10 87.8 17.6 176 181-383 13-214 (491)
86 TIGR00678 holB DNA polymerase 98.3 2.4E-05 5.2E-10 76.7 16.8 90 285-382 95-187 (188)
87 PRK08903 DnaA regulatory inact 98.3 8.8E-06 1.9E-10 82.6 14.1 171 184-390 22-203 (227)
88 KOG1259 Nischarin, modulator o 98.3 9E-08 2E-12 93.7 -0.9 127 641-773 284-416 (490)
89 cd01128 rho_factor Transcripti 98.3 1.5E-06 3.3E-11 87.7 7.9 91 203-297 15-114 (249)
90 PRK05642 DNA replication initi 98.3 1.1E-05 2.4E-10 81.6 14.1 151 204-386 45-208 (234)
91 PRK14969 DNA polymerase III su 98.3 1.8E-05 3.9E-10 89.6 17.1 196 181-386 16-221 (527)
92 KOG2120 SCF ubiquitin ligase, 98.3 2.4E-08 5.2E-13 97.8 -5.5 135 700-837 230-371 (419)
93 KOG0532 Leucine-rich repeat (L 98.2 5.9E-08 1.3E-12 103.4 -3.9 77 583-668 94-171 (722)
94 PRK13341 recombination factor 98.2 1.8E-05 3.9E-10 92.3 15.7 169 181-381 28-212 (725)
95 PRK14970 DNA polymerase III su 98.2 4E-05 8.6E-10 84.0 17.8 180 181-383 17-206 (367)
96 PRK09087 hypothetical protein; 98.2 1.8E-05 3.9E-10 79.4 13.5 138 204-385 44-194 (226)
97 PRK14959 DNA polymerase III su 98.2 3.6E-05 7.8E-10 86.9 17.2 200 181-391 16-226 (624)
98 PRK09111 DNA polymerase III su 98.2 4.3E-05 9.3E-10 87.3 18.0 200 180-386 23-233 (598)
99 PRK14954 DNA polymerase III su 98.2 4.7E-05 1E-09 87.1 18.2 198 181-381 16-223 (620)
100 PF14516 AAA_35: AAA-like doma 98.2 0.00026 5.5E-09 75.8 22.8 204 178-392 8-245 (331)
101 PRK07133 DNA polymerase III su 98.2 4.2E-05 9.1E-10 87.8 17.4 190 181-386 18-220 (725)
102 TIGR02903 spore_lon_C ATP-depe 98.2 1.9E-05 4.2E-10 91.2 15.0 202 181-387 154-396 (615)
103 PRK08451 DNA polymerase III su 98.2 7E-05 1.5E-09 83.6 18.6 196 181-386 14-218 (535)
104 PRK14952 DNA polymerase III su 98.2 6.1E-05 1.3E-09 85.5 18.3 199 181-389 13-223 (584)
105 KOG2120 SCF ubiquitin ligase, 98.2 5.1E-08 1.1E-12 95.5 -5.4 160 700-864 206-375 (419)
106 PRK07764 DNA polymerase III su 98.2 5.2E-05 1.1E-09 89.6 18.2 192 181-383 15-218 (824)
107 PRK14087 dnaA chromosomal repl 98.2 3.9E-05 8.3E-10 85.3 16.1 167 204-388 141-321 (450)
108 COG4886 Leucine-rich repeat (L 98.2 1.9E-06 4.1E-11 95.8 5.9 78 583-668 112-191 (394)
109 PF05621 TniB: Bacterial TniB 98.2 8.6E-05 1.9E-09 75.5 17.0 203 178-383 31-258 (302)
110 COG4886 Leucine-rich repeat (L 98.2 2.6E-06 5.7E-11 94.7 6.4 42 751-794 249-291 (394)
111 PRK14953 DNA polymerase III su 98.2 0.00011 2.4E-09 82.2 19.1 179 181-387 16-221 (486)
112 PRK14950 DNA polymerase III su 98.1 9.1E-05 2E-09 85.6 18.8 196 181-386 16-221 (585)
113 KOG2028 ATPase related to the 98.1 3.5E-05 7.6E-10 78.1 13.2 155 202-381 160-331 (554)
114 PRK06305 DNA polymerase III su 98.1 9.8E-05 2.1E-09 82.1 17.9 191 181-382 17-218 (451)
115 PRK14971 DNA polymerase III su 98.1 9.5E-05 2.1E-09 85.1 18.3 175 181-383 17-219 (614)
116 TIGR01242 26Sp45 26S proteasom 98.1 1.3E-05 2.8E-10 87.4 10.5 175 179-380 120-328 (364)
117 PF13855 LRR_8: Leucine rich r 98.1 2.3E-06 5E-11 66.1 3.3 57 587-651 1-59 (61)
118 TIGR02880 cbbX_cfxQ probable R 98.1 9.9E-05 2.1E-09 77.0 16.1 158 181-357 22-210 (284)
119 PRK09376 rho transcription ter 98.1 5E-06 1.1E-10 87.3 5.9 105 191-297 157-267 (416)
120 PRK06647 DNA polymerase III su 98.1 0.00018 3.8E-09 81.9 18.8 196 181-386 16-220 (563)
121 TIGR02881 spore_V_K stage V sp 98.0 4.2E-05 9.2E-10 79.2 12.3 157 182-357 7-193 (261)
122 PF13855 LRR_8: Leucine rich r 98.0 1.5E-06 3.3E-11 67.2 1.0 60 780-840 1-60 (61)
123 PHA02544 44 clamp loader, smal 98.0 5.8E-05 1.3E-09 81.0 13.6 148 180-353 20-171 (316)
124 COG2255 RuvB Holliday junction 98.0 0.00023 5E-09 70.4 15.9 175 180-387 25-224 (332)
125 CHL00181 cbbX CbbX; Provisiona 98.0 0.00014 3.1E-09 75.7 15.6 158 181-357 23-211 (287)
126 PRK14948 DNA polymerase III su 98.0 0.00026 5.6E-09 81.6 18.3 198 181-386 16-222 (620)
127 PRK14965 DNA polymerase III su 98.0 0.0002 4.3E-09 82.3 17.3 198 181-389 16-224 (576)
128 KOG2543 Origin recognition com 98.0 0.00037 8.1E-09 71.8 17.1 172 179-355 4-193 (438)
129 KOG0989 Replication factor C, 98.0 6.9E-05 1.5E-09 74.8 11.3 185 179-381 34-225 (346)
130 TIGR00767 rho transcription te 97.9 2.2E-05 4.7E-10 83.2 8.0 95 203-298 167-267 (415)
131 PRK14088 dnaA chromosomal repl 97.9 0.00024 5.2E-09 78.9 16.8 158 204-383 130-302 (440)
132 PRK06620 hypothetical protein; 97.9 0.00022 4.7E-09 71.0 14.6 133 205-383 45-186 (214)
133 PRK05563 DNA polymerase III su 97.9 0.00049 1.1E-08 78.8 19.0 193 181-383 16-217 (559)
134 KOG2227 Pre-initiation complex 97.9 0.00022 4.8E-09 75.4 14.6 206 179-387 148-373 (529)
135 PRK03992 proteasome-activating 97.9 0.00012 2.6E-09 80.2 13.2 174 179-379 129-336 (389)
136 TIGR00362 DnaA chromosomal rep 97.9 0.00027 5.8E-09 78.5 16.2 157 204-383 136-307 (405)
137 PRK07399 DNA polymerase III su 97.9 0.00047 1E-08 72.7 16.9 196 181-385 4-220 (314)
138 PRK00149 dnaA chromosomal repl 97.9 0.0003 6.5E-09 79.1 15.9 157 203-383 147-319 (450)
139 PRK05707 DNA polymerase III su 97.8 0.0006 1.3E-08 72.3 16.5 171 203-386 21-203 (328)
140 PF12799 LRR_4: Leucine Rich r 97.8 1.4E-05 3.1E-10 56.3 2.7 38 588-633 2-39 (44)
141 KOG0531 Protein phosphatase 1, 97.8 2.5E-06 5.4E-11 95.0 -1.9 62 583-653 91-152 (414)
142 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00019 4.2E-09 86.0 13.7 179 181-379 187-389 (852)
143 COG3267 ExeA Type II secretory 97.8 0.0016 3.6E-08 63.8 17.0 182 203-389 50-248 (269)
144 COG1373 Predicted ATPase (AAA+ 97.7 0.00034 7.4E-09 76.5 13.6 135 188-351 24-163 (398)
145 PRK11331 5-methylcytosine-spec 97.7 0.00012 2.6E-09 79.1 9.3 119 181-309 175-298 (459)
146 PRK12422 chromosomal replicati 97.7 0.00047 1E-08 76.4 14.4 153 204-379 141-306 (445)
147 TIGR02639 ClpA ATP-dependent C 97.7 0.00033 7.2E-09 83.5 14.2 155 181-355 182-358 (731)
148 PRK14086 dnaA chromosomal repl 97.7 0.00071 1.5E-08 76.3 15.6 156 204-383 314-485 (617)
149 PLN03150 hypothetical protein; 97.7 3.8E-05 8.3E-10 89.6 5.7 65 753-818 438-504 (623)
150 KOG0991 Replication factor C, 97.7 0.00041 8.8E-09 66.3 11.2 47 179-227 25-71 (333)
151 PF12799 LRR_4: Leucine Rich r 97.7 3.3E-05 7.2E-10 54.5 3.1 34 618-651 1-34 (44)
152 PLN03150 hypothetical protein; 97.7 2.8E-05 6.1E-10 90.7 4.3 105 758-864 419-527 (623)
153 PF00004 AAA: ATPase family as 97.7 0.00025 5.5E-09 64.9 9.8 94 207-323 1-111 (132)
154 TIGR00763 lon ATP-dependent pr 97.7 0.0021 4.6E-08 77.1 19.7 161 180-355 319-505 (775)
155 TIGR03689 pup_AAA proteasome A 97.7 0.00044 9.5E-09 77.0 12.8 163 181-356 182-379 (512)
156 KOG2004 Mitochondrial ATP-depe 97.7 0.0021 4.5E-08 71.6 17.5 162 179-355 409-596 (906)
157 KOG2982 Uncharacterized conser 97.6 3.1E-05 6.7E-10 76.5 3.1 175 702-881 69-285 (418)
158 PTZ00454 26S protease regulato 97.6 0.00068 1.5E-08 73.9 13.7 174 180-380 144-351 (398)
159 PRK10787 DNA-binding ATP-depen 97.6 0.0032 6.9E-08 74.9 20.3 161 180-355 321-506 (784)
160 PTZ00361 26 proteosome regulat 97.6 0.00036 7.8E-09 76.5 10.6 154 181-357 183-369 (438)
161 KOG0531 Protein phosphatase 1, 97.6 1.6E-05 3.5E-10 88.5 0.1 58 583-650 114-171 (414)
162 COG0466 Lon ATP-dependent Lon 97.6 0.00034 7.3E-09 78.1 10.2 161 180-355 322-508 (782)
163 smart00382 AAA ATPases associa 97.6 0.00033 7.1E-09 65.1 9.0 88 204-298 2-90 (148)
164 CHL00095 clpC Clp protease ATP 97.5 0.00044 9.5E-09 83.5 11.9 154 181-354 179-353 (821)
165 PRK08769 DNA polymerase III su 97.5 0.0022 4.7E-08 67.5 15.1 179 190-386 13-208 (319)
166 PRK08116 hypothetical protein; 97.5 0.00049 1.1E-08 71.0 9.8 101 205-323 115-220 (268)
167 PF05673 DUF815: Protein of un 97.5 0.0049 1.1E-07 60.9 16.0 122 177-327 23-154 (249)
168 TIGR00602 rad24 checkpoint pro 97.5 0.0012 2.7E-08 75.5 13.6 198 178-382 81-319 (637)
169 CHL00176 ftsH cell division pr 97.5 0.0022 4.7E-08 74.2 15.6 172 181-378 183-386 (638)
170 PF10443 RNA12: RNA12 protein; 97.5 0.022 4.8E-07 61.0 21.4 211 186-405 1-299 (431)
171 PRK06871 DNA polymerase III su 97.5 0.0034 7.4E-08 66.1 15.4 177 191-383 12-200 (325)
172 PRK08058 DNA polymerase III su 97.4 0.0031 6.8E-08 67.4 15.5 164 182-354 6-181 (329)
173 COG5238 RNA1 Ran GTPase-activa 97.4 1.7E-05 3.7E-10 77.2 -1.6 246 584-865 27-316 (388)
174 PRK06090 DNA polymerase III su 97.4 0.013 2.7E-07 61.7 19.5 194 190-406 12-218 (319)
175 PRK10536 hypothetical protein; 97.4 0.00081 1.8E-08 67.2 9.6 132 182-325 56-214 (262)
176 PRK11034 clpA ATP-dependent Cl 97.4 0.00072 1.6E-08 79.6 10.7 156 181-355 186-362 (758)
177 TIGR02639 ClpA ATP-dependent C 97.4 0.0026 5.7E-08 75.9 15.7 116 181-310 454-579 (731)
178 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0019 4.1E-08 78.3 14.5 155 181-355 173-349 (852)
179 PRK10865 protein disaggregatio 97.4 0.0023 4.9E-08 77.3 14.5 156 181-355 178-354 (857)
180 KOG4579 Leucine-rich repeat (L 97.3 7.7E-06 1.7E-10 71.2 -4.8 103 781-884 28-132 (177)
181 COG0593 DnaA ATPase involved i 97.3 0.005 1.1E-07 66.1 15.1 158 179-359 86-261 (408)
182 PRK07993 DNA polymerase III su 97.3 0.004 8.7E-08 66.3 14.4 178 190-383 11-201 (334)
183 PF13177 DNA_pol3_delta2: DNA 97.3 0.0025 5.5E-08 60.3 11.4 136 185-343 1-162 (162)
184 TIGR01241 FtsH_fam ATP-depende 97.3 0.0016 3.6E-08 74.1 12.0 174 180-379 54-259 (495)
185 KOG1644 U2-associated snRNP A' 97.3 0.00015 3.2E-09 67.9 2.8 83 779-864 41-125 (233)
186 KOG3665 ZYG-1-like serine/thre 97.3 7.8E-05 1.7E-09 86.6 1.2 102 556-668 121-225 (699)
187 KOG1859 Leucine-rich repeat pr 97.3 1.5E-05 3.2E-10 87.9 -4.4 209 580-817 77-292 (1096)
188 TIGR03345 VI_ClpV1 type VI sec 97.3 0.01 2.2E-07 71.5 18.5 134 180-323 565-718 (852)
189 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0035 7.6E-08 64.8 12.8 54 190-252 11-64 (262)
190 PRK08118 topology modulation p 97.2 0.00018 3.9E-09 68.5 2.9 34 206-239 3-37 (167)
191 TIGR03346 chaperone_ClpB ATP-d 97.2 0.019 4E-07 69.9 20.3 132 181-323 565-717 (852)
192 PF04665 Pox_A32: Poxvirus A32 97.2 0.0007 1.5E-08 67.3 6.5 36 205-242 14-49 (241)
193 COG1222 RPT1 ATP-dependent 26S 97.2 0.01 2.3E-07 61.1 14.7 183 181-391 151-372 (406)
194 COG2812 DnaX DNA polymerase II 97.2 0.0031 6.7E-08 69.8 11.9 191 181-381 16-215 (515)
195 KOG1859 Leucine-rich repeat pr 97.2 1.1E-05 2.3E-10 88.9 -7.1 186 634-841 102-291 (1096)
196 PRK08181 transposase; Validate 97.2 0.001 2.2E-08 68.2 7.6 36 205-242 107-142 (269)
197 PRK12608 transcription termina 97.1 0.0016 3.5E-08 68.8 9.0 107 189-297 119-231 (380)
198 PRK12377 putative replication 97.1 0.0016 3.4E-08 65.9 8.4 38 204-243 101-138 (248)
199 KOG4341 F-box protein containi 97.1 1.9E-05 4.1E-10 81.8 -5.6 131 753-883 290-437 (483)
200 PRK15386 type III secretion pr 97.1 0.0014 3.1E-08 70.1 8.2 62 583-657 48-112 (426)
201 COG0470 HolB ATPase involved i 97.1 0.0057 1.2E-07 66.0 13.2 141 182-341 2-167 (325)
202 KOG3665 ZYG-1-like serine/thre 97.1 0.00022 4.9E-09 82.9 1.9 130 732-864 122-262 (699)
203 PRK10865 protein disaggregatio 97.1 0.0076 1.6E-07 72.9 14.8 132 181-323 568-720 (857)
204 PRK15386 type III secretion pr 97.1 0.0011 2.4E-08 70.9 6.8 135 701-863 49-188 (426)
205 cd01393 recA_like RecA is a b 97.0 0.0058 1.3E-07 61.9 11.3 129 195-324 10-169 (226)
206 TIGR01243 CDC48 AAA family ATP 97.0 0.011 2.4E-07 70.9 15.3 174 181-380 453-657 (733)
207 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0064 1.4E-07 68.0 12.2 176 181-380 228-429 (489)
208 KOG1514 Origin recognition com 97.0 0.029 6.4E-07 62.9 16.9 205 179-390 394-625 (767)
209 KOG0733 Nuclear AAA ATPase (VC 97.0 0.012 2.7E-07 64.5 13.6 155 181-358 190-377 (802)
210 COG5238 RNA1 Ran GTPase-activa 97.0 0.0002 4.3E-09 70.0 0.1 110 754-864 154-284 (388)
211 PRK04132 replication factor C 97.0 0.018 4E-07 68.1 16.2 152 212-384 574-729 (846)
212 PF01695 IstB_IS21: IstB-like 97.0 0.0006 1.3E-08 65.6 3.4 37 204-242 47-83 (178)
213 PF02562 PhoH: PhoH-like prote 97.0 0.0029 6.3E-08 61.5 8.1 129 186-325 5-157 (205)
214 PRK06526 transposase; Provisio 97.0 0.0015 3.2E-08 66.7 6.4 24 204-227 98-121 (254)
215 TIGR01243 CDC48 AAA family ATP 96.9 0.0086 1.9E-07 71.8 13.8 175 181-381 178-382 (733)
216 PRK09361 radB DNA repair and r 96.9 0.0032 6.9E-08 63.7 8.7 55 193-250 12-66 (225)
217 COG2884 FtsE Predicted ATPase 96.9 0.01 2.3E-07 55.4 10.9 71 273-343 142-216 (223)
218 PRK06964 DNA polymerase III su 96.9 0.019 4.2E-07 61.0 14.6 92 285-386 131-225 (342)
219 KOG0735 AAA+-type ATPase [Post 96.9 0.015 3.2E-07 65.0 13.9 176 181-379 408-608 (952)
220 PRK06835 DNA replication prote 96.9 0.0034 7.3E-08 66.5 8.9 37 205-243 184-220 (329)
221 KOG4341 F-box protein containi 96.9 2E-05 4.2E-10 81.7 -7.5 262 580-864 157-438 (483)
222 COG1223 Predicted ATPase (AAA+ 96.9 0.024 5.2E-07 55.6 13.6 175 179-379 119-318 (368)
223 PF00448 SRP54: SRP54-type pro 96.9 0.0017 3.8E-08 63.4 6.2 57 204-262 1-58 (196)
224 KOG2035 Replication factor C, 96.9 0.034 7.3E-07 55.2 14.8 225 182-425 14-280 (351)
225 PRK07952 DNA replication prote 96.9 0.0043 9.3E-08 62.6 9.2 100 204-322 99-203 (244)
226 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0048 1E-07 63.0 9.7 59 200-259 15-77 (235)
227 PRK06921 hypothetical protein; 96.9 0.0045 9.7E-08 63.8 9.1 38 203-242 116-154 (266)
228 KOG1644 U2-associated snRNP A' 96.9 0.0012 2.5E-08 62.2 4.2 102 733-837 43-148 (233)
229 PHA00729 NTP-binding motif con 96.9 0.0063 1.4E-07 59.9 9.6 33 193-227 8-40 (226)
230 TIGR02237 recomb_radB DNA repa 96.8 0.0033 7.2E-08 62.8 7.9 51 199-252 7-57 (209)
231 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0011 2.3E-08 69.9 4.3 49 179-227 49-101 (361)
232 cd01120 RecA-like_NTPases RecA 96.8 0.007 1.5E-07 57.6 9.9 40 206-247 1-40 (165)
233 COG1484 DnaC DNA replication p 96.8 0.0037 7.9E-08 63.9 7.7 75 203-297 104-178 (254)
234 TIGR02902 spore_lonB ATP-depen 96.8 0.0081 1.7E-07 68.6 11.2 45 181-227 65-109 (531)
235 KOG0741 AAA+-type ATPase [Post 96.8 0.042 9E-07 59.4 15.4 145 202-376 536-704 (744)
236 PRK09183 transposase/IS protei 96.8 0.0035 7.5E-08 64.4 7.4 24 204-227 102-125 (259)
237 PF07693 KAP_NTPase: KAP famil 96.8 0.047 1E-06 58.9 16.6 41 187-227 2-43 (325)
238 PRK08939 primosomal protein Dn 96.7 0.0058 1.3E-07 64.2 9.0 117 185-322 135-259 (306)
239 PF08423 Rad51: Rad51; InterP 96.7 0.0047 1E-07 63.3 7.9 68 192-260 26-97 (256)
240 PRK07261 topology modulation p 96.7 0.0039 8.4E-08 59.7 6.9 22 206-227 2-23 (171)
241 PF14532 Sigma54_activ_2: Sigm 96.7 0.0025 5.5E-08 58.7 5.4 105 184-323 1-109 (138)
242 KOG4579 Leucine-rich repeat (L 96.7 0.00034 7.5E-09 61.2 -0.4 72 579-658 69-141 (177)
243 PRK04296 thymidine kinase; Pro 96.7 0.0043 9.3E-08 60.6 6.8 113 205-325 3-117 (190)
244 cd00983 recA RecA is a bacter 96.6 0.0055 1.2E-07 64.2 7.8 90 200-296 51-143 (325)
245 CHL00095 clpC Clp protease ATP 96.6 0.013 2.8E-07 71.0 12.1 132 181-323 509-661 (821)
246 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0068 1.5E-07 61.7 8.2 101 203-305 68-183 (274)
247 PRK08699 DNA polymerase III su 96.6 0.019 4.1E-07 61.0 11.7 69 286-354 113-184 (325)
248 TIGR02238 recomb_DMC1 meiotic 96.6 0.0099 2.2E-07 62.6 9.3 69 192-261 84-156 (313)
249 PF13207 AAA_17: AAA domain; P 96.6 0.0016 3.6E-08 58.4 3.0 22 206-227 1-22 (121)
250 PRK09354 recA recombinase A; P 96.5 0.0078 1.7E-07 63.6 8.3 97 193-296 48-148 (349)
251 KOG0734 AAA+-type ATPase conta 96.5 0.016 3.5E-07 62.5 10.5 47 182-228 305-361 (752)
252 PLN00020 ribulose bisphosphate 96.5 0.044 9.6E-07 57.6 13.4 26 202-227 146-171 (413)
253 cd01394 radB RadB. The archaea 96.5 0.01 2.3E-07 59.7 8.8 53 193-247 8-60 (218)
254 KOG0744 AAA+-type ATPase [Post 96.5 0.028 6.1E-07 57.0 11.4 27 204-230 177-203 (423)
255 PTZ00494 tuzin-like protein; P 96.5 0.81 1.8E-05 49.1 22.4 168 178-355 368-544 (664)
256 PLN03187 meiotic recombination 96.5 0.012 2.6E-07 62.6 9.4 67 194-261 116-186 (344)
257 PF12061 DUF3542: Protein of u 96.5 0.01 2.2E-07 59.4 8.2 77 4-80 296-373 (402)
258 COG4608 AppF ABC-type oligopep 96.5 0.017 3.7E-07 57.8 9.8 128 203-333 38-179 (268)
259 KOG2123 Uncharacterized conser 96.5 0.00019 4.1E-09 70.4 -3.9 80 780-864 19-100 (388)
260 PRK05541 adenylylsulfate kinas 96.5 0.016 3.4E-07 56.0 9.4 37 203-241 6-42 (176)
261 cd03238 ABC_UvrA The excision 96.5 0.026 5.6E-07 54.1 10.7 116 203-328 20-153 (176)
262 TIGR02012 tigrfam_recA protein 96.5 0.0093 2E-07 62.5 8.2 90 200-296 51-143 (321)
263 KOG2228 Origin recognition com 96.4 0.028 6.1E-07 57.4 11.0 173 180-355 23-219 (408)
264 PF13671 AAA_33: AAA domain; P 96.4 0.014 3E-07 54.1 8.6 22 206-227 1-22 (143)
265 PRK11034 clpA ATP-dependent Cl 96.4 0.006 1.3E-07 72.0 7.4 115 181-309 458-582 (758)
266 TIGR02239 recomb_RAD51 DNA rep 96.4 0.013 2.8E-07 62.0 9.1 69 192-261 84-156 (316)
267 TIGR02858 spore_III_AA stage I 96.4 0.033 7.2E-07 57.2 11.8 130 189-328 97-233 (270)
268 KOG2982 Uncharacterized conser 96.4 0.00026 5.6E-09 70.2 -3.4 154 706-866 47-213 (418)
269 TIGR01817 nifA Nif-specific re 96.4 0.071 1.5E-06 61.6 15.9 49 179-227 194-242 (534)
270 KOG0730 AAA+-type ATPase [Post 96.4 0.041 9E-07 61.4 12.9 157 181-360 434-620 (693)
271 cd03214 ABC_Iron-Siderophores_ 96.4 0.023 5E-07 55.1 10.1 122 203-327 24-161 (180)
272 TIGR02974 phageshock_pspF psp 96.4 0.089 1.9E-06 56.2 15.4 45 183-227 1-45 (329)
273 cd01131 PilT Pilus retraction 96.4 0.0075 1.6E-07 59.4 6.7 108 205-327 2-112 (198)
274 PRK15455 PrkA family serine pr 96.4 0.0029 6.3E-08 70.1 4.0 46 182-227 77-126 (644)
275 PRK14974 cell division protein 96.4 0.024 5.2E-07 60.1 10.7 101 203-307 139-247 (336)
276 PRK05800 cobU adenosylcobinami 96.4 0.029 6.4E-07 53.4 10.3 82 206-295 3-85 (170)
277 TIGR00959 ffh signal recogniti 96.4 0.032 6.9E-07 61.3 11.9 25 203-227 98-122 (428)
278 COG0542 clpA ATP-binding subun 96.4 0.014 2.9E-07 67.7 9.3 130 181-322 491-642 (786)
279 PF00485 PRK: Phosphoribulokin 96.3 0.02 4.3E-07 56.3 9.4 83 206-290 1-87 (194)
280 KOG0731 AAA+-type ATPase conta 96.3 0.069 1.5E-06 61.6 14.7 178 181-383 311-521 (774)
281 COG1136 SalX ABC-type antimicr 96.3 0.017 3.6E-07 56.9 8.7 58 273-330 147-209 (226)
282 PRK13695 putative NTPase; Prov 96.3 0.011 2.4E-07 57.0 7.4 22 206-227 2-23 (174)
283 KOG0733 Nuclear AAA ATPase (VC 96.3 0.056 1.2E-06 59.6 13.2 131 204-357 545-694 (802)
284 cd00544 CobU Adenosylcobinamid 96.3 0.14 3.1E-06 48.6 14.6 38 207-249 2-39 (169)
285 cd03247 ABCC_cytochrome_bd The 96.3 0.026 5.7E-07 54.6 9.9 120 203-328 27-161 (178)
286 KOG1969 DNA replication checkp 96.3 0.0089 1.9E-07 67.0 7.2 75 202-297 324-398 (877)
287 PRK15429 formate hydrogenlyase 96.3 0.079 1.7E-06 63.2 15.7 47 181-227 376-422 (686)
288 PTZ00035 Rad51 protein; Provis 96.3 0.024 5.2E-07 60.6 10.2 69 192-261 106-178 (337)
289 cd03223 ABCD_peroxisomal_ALDP 96.3 0.055 1.2E-06 51.6 11.7 117 203-328 26-152 (166)
290 PRK04301 radA DNA repair and r 96.3 0.024 5.2E-07 60.5 10.3 68 192-260 90-161 (317)
291 PRK11608 pspF phage shock prot 96.3 0.074 1.6E-06 56.9 13.9 47 181-227 6-52 (326)
292 COG0468 RecA RecA/RadA recombi 96.3 0.022 4.8E-07 58.3 9.4 97 195-296 51-151 (279)
293 PRK11889 flhF flagellar biosyn 96.3 0.033 7E-07 59.4 10.7 101 203-309 240-347 (436)
294 PRK00771 signal recognition pa 96.3 0.041 8.9E-07 60.6 12.1 91 203-296 94-185 (437)
295 cd03115 SRP The signal recogni 96.2 0.024 5.2E-07 54.6 9.3 22 206-227 2-23 (173)
296 PRK06696 uridine kinase; Valid 96.2 0.0049 1.1E-07 62.1 4.6 43 185-227 2-45 (223)
297 KOG0728 26S proteasome regulat 96.2 0.17 3.8E-06 49.2 14.3 146 183-355 148-331 (404)
298 PRK10867 signal recognition pa 96.2 0.042 9.1E-07 60.4 11.5 25 203-227 99-123 (433)
299 PRK07667 uridine kinase; Provi 96.1 0.007 1.5E-07 59.4 4.9 38 190-227 3-40 (193)
300 PRK06067 flagellar accessory p 96.1 0.031 6.8E-07 56.8 9.8 99 193-296 14-130 (234)
301 PLN03186 DNA repair protein RA 96.1 0.031 6.7E-07 59.5 9.7 69 192-261 111-183 (342)
302 PRK07132 DNA polymerase III su 96.0 0.39 8.4E-06 50.3 17.5 152 203-385 17-184 (299)
303 PF03215 Rad17: Rad17 cell cyc 96.0 0.04 8.6E-07 62.2 10.8 58 180-241 18-78 (519)
304 COG1126 GlnQ ABC-type polar am 96.0 0.052 1.1E-06 52.2 9.9 125 203-330 27-202 (240)
305 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.027 5.9E-07 52.4 7.9 118 205-325 3-139 (159)
306 PF12775 AAA_7: P-loop contain 96.0 0.015 3.3E-07 60.0 6.9 87 191-296 23-110 (272)
307 PF13604 AAA_30: AAA domain; P 96.0 0.036 7.8E-07 54.4 9.2 108 204-326 18-133 (196)
308 PRK05022 anaerobic nitric oxid 96.0 0.16 3.5E-06 58.1 15.8 64 180-245 186-249 (509)
309 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.055 1.2E-06 52.6 10.4 22 206-227 1-22 (183)
310 cd03230 ABC_DR_subfamily_A Thi 95.9 0.031 6.7E-07 53.8 8.4 120 203-328 25-159 (173)
311 KOG2739 Leucine-rich acidic nu 95.9 0.003 6.5E-08 62.2 1.3 61 779-839 64-126 (260)
312 cd03228 ABCC_MRP_Like The MRP 95.9 0.049 1.1E-06 52.3 9.7 120 203-329 27-160 (171)
313 PRK06762 hypothetical protein; 95.9 0.026 5.7E-07 53.9 7.7 24 204-227 2-25 (166)
314 COG1121 ZnuC ABC-type Mn/Zn tr 95.9 0.029 6.2E-07 56.2 8.1 123 204-328 30-203 (254)
315 TIGR02236 recomb_radA DNA repa 95.9 0.043 9.4E-07 58.5 10.2 67 193-260 84-154 (310)
316 PF00560 LRR_1: Leucine Rich R 95.9 0.0025 5.4E-08 37.2 0.4 21 619-639 1-21 (22)
317 TIGR01069 mutS2 MutS2 family p 95.9 0.0071 1.5E-07 71.8 4.2 113 285-407 401-522 (771)
318 PRK14722 flhF flagellar biosyn 95.8 0.058 1.3E-06 57.9 10.5 89 203-296 136-225 (374)
319 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.075 1.6E-06 49.3 10.1 103 203-328 25-131 (144)
320 PRK05973 replicative DNA helic 95.8 0.076 1.6E-06 53.2 10.7 150 202-359 62-228 (237)
321 KOG0743 AAA+-type ATPase [Post 95.8 0.22 4.8E-06 53.5 14.3 153 205-393 236-417 (457)
322 COG4618 ArpD ABC-type protease 95.8 0.085 1.8E-06 57.2 11.3 23 204-226 362-384 (580)
323 PRK08533 flagellar accessory p 95.8 0.051 1.1E-06 54.8 9.5 50 202-255 22-71 (230)
324 TIGR01425 SRP54_euk signal rec 95.8 0.089 1.9E-06 57.5 11.8 25 203-227 99-123 (429)
325 PRK09270 nucleoside triphospha 95.7 0.038 8.1E-07 56.0 8.4 27 201-227 30-56 (229)
326 COG1124 DppF ABC-type dipeptid 95.7 0.094 2E-06 51.5 10.5 128 203-330 32-208 (252)
327 cd03216 ABC_Carb_Monos_I This 95.7 0.046 1E-06 51.9 8.5 114 203-327 25-145 (163)
328 cd03222 ABC_RNaseL_inhibitor T 95.7 0.071 1.5E-06 51.1 9.7 101 203-328 24-136 (177)
329 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.036 7.8E-07 56.4 8.1 58 193-254 10-67 (237)
330 TIGR03499 FlhF flagellar biosy 95.7 0.035 7.6E-07 57.9 8.2 41 203-243 193-233 (282)
331 PRK12723 flagellar biosynthesi 95.7 0.094 2E-06 56.8 11.6 101 203-309 173-281 (388)
332 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.08 1.7E-06 53.7 10.6 125 194-323 10-165 (229)
333 COG1618 Predicted nucleotide k 95.7 0.0085 1.8E-07 54.4 2.9 24 205-228 6-29 (179)
334 COG0563 Adk Adenylate kinase a 95.6 0.029 6.2E-07 53.8 6.6 22 206-227 2-23 (178)
335 cd01121 Sms Sms (bacterial rad 95.6 0.036 7.8E-07 59.9 8.1 51 192-244 70-120 (372)
336 COG1875 NYN ribonuclease and A 95.6 0.067 1.5E-06 55.4 9.3 133 186-326 229-390 (436)
337 PRK10733 hflB ATP-dependent me 95.6 0.14 3.1E-06 60.1 13.5 153 182-357 153-337 (644)
338 cd03246 ABCC_Protease_Secretio 95.6 0.067 1.5E-06 51.4 9.1 119 203-328 27-160 (173)
339 PRK00409 recombination and DNA 95.6 0.0094 2E-07 71.0 3.7 179 203-407 326-527 (782)
340 PTZ00301 uridine kinase; Provi 95.6 0.017 3.8E-07 57.0 5.0 24 204-227 3-26 (210)
341 PRK11388 DNA-binding transcrip 95.6 0.23 5E-06 58.8 15.4 47 181-227 325-371 (638)
342 TIGR00064 ftsY signal recognit 95.5 0.068 1.5E-06 55.3 9.5 92 202-296 70-164 (272)
343 PRK05703 flhF flagellar biosyn 95.5 0.1 2.2E-06 57.7 11.3 86 204-295 221-308 (424)
344 COG0464 SpoVK ATPases of the A 95.5 0.12 2.7E-06 59.1 12.5 132 203-357 275-425 (494)
345 PF03308 ArgK: ArgK protein; 95.5 0.021 4.5E-07 56.8 5.3 59 189-247 14-72 (266)
346 cd03217 ABC_FeS_Assembly ABC-t 95.5 0.078 1.7E-06 52.4 9.5 25 203-227 25-49 (200)
347 COG0572 Udk Uridine kinase [Nu 95.5 0.032 7E-07 54.3 6.4 79 203-287 7-85 (218)
348 cd03229 ABC_Class3 This class 95.5 0.058 1.2E-06 52.2 8.2 25 203-227 25-49 (178)
349 COG0542 clpA ATP-binding subun 95.5 0.035 7.6E-07 64.4 7.6 154 181-355 170-346 (786)
350 KOG2739 Leucine-rich acidic nu 95.5 0.0039 8.4E-08 61.4 -0.0 103 779-883 42-154 (260)
351 TIGR00390 hslU ATP-dependent p 95.4 0.031 6.7E-07 60.1 6.6 48 180-227 11-70 (441)
352 COG2607 Predicted ATPase (AAA+ 95.4 0.11 2.3E-06 50.8 9.5 102 178-310 57-166 (287)
353 PF06414 Zeta_toxin: Zeta toxi 95.4 0.03 6.5E-07 55.3 6.2 106 202-312 13-119 (199)
354 PF01583 APS_kinase: Adenylyls 95.4 0.014 3E-07 54.1 3.5 36 204-241 2-37 (156)
355 COG1102 Cmk Cytidylate kinase 95.4 0.016 3.4E-07 52.7 3.7 44 206-262 2-45 (179)
356 KOG2123 Uncharacterized conser 95.4 0.00073 1.6E-08 66.4 -5.1 57 779-837 40-96 (388)
357 KOG1970 Checkpoint RAD17-RFC c 95.4 0.35 7.6E-06 53.1 14.3 42 186-227 87-133 (634)
358 PRK04328 hypothetical protein; 95.4 0.042 9E-07 56.3 7.3 51 193-245 12-62 (249)
359 PF13238 AAA_18: AAA domain; P 95.4 0.011 2.4E-07 53.7 2.7 21 207-227 1-21 (129)
360 KOG1532 GTPase XAB1, interacts 95.4 0.065 1.4E-06 53.0 8.0 92 202-296 17-125 (366)
361 PRK12724 flagellar biosynthesi 95.4 0.085 1.8E-06 57.1 9.7 25 203-227 222-246 (432)
362 PRK05439 pantothenate kinase; 95.3 0.071 1.5E-06 55.7 8.8 82 201-287 83-166 (311)
363 cd03282 ABC_MSH4_euk MutS4 hom 95.3 0.035 7.5E-07 54.8 6.2 118 204-330 29-157 (204)
364 KOG0739 AAA+-type ATPase [Post 95.3 0.22 4.8E-06 50.0 11.3 93 181-297 133-236 (439)
365 COG1120 FepC ABC-type cobalami 95.3 0.11 2.3E-06 52.5 9.5 24 203-226 27-50 (258)
366 PRK06002 fliI flagellum-specif 95.3 0.062 1.3E-06 58.8 8.4 92 203-297 164-265 (450)
367 cd01135 V_A-ATPase_B V/A-type 95.3 0.14 3.1E-06 52.1 10.4 103 203-305 68-186 (276)
368 cd02019 NK Nucleoside/nucleoti 95.3 0.012 2.7E-07 46.4 2.3 22 206-227 1-22 (69)
369 cd01122 GP4d_helicase GP4d_hel 95.3 0.19 4.1E-06 52.4 12.0 54 203-259 29-82 (271)
370 PF00006 ATP-synt_ab: ATP synt 95.2 0.075 1.6E-06 52.5 8.2 100 193-297 5-116 (215)
371 cd03278 ABC_SMC_barmotin Barmo 95.2 0.26 5.7E-06 48.4 12.1 20 206-225 24-43 (197)
372 PRK13531 regulatory ATPase Rav 95.2 0.018 3.8E-07 63.2 4.1 44 180-227 19-62 (498)
373 PRK09519 recA DNA recombinatio 95.2 0.06 1.3E-06 63.0 8.6 98 192-296 47-148 (790)
374 PF00154 RecA: recA bacterial 95.2 0.074 1.6E-06 55.7 8.5 89 202-297 51-142 (322)
375 cd03269 ABC_putative_ATPase Th 95.2 0.18 3.9E-06 50.3 11.1 25 203-227 25-49 (210)
376 PRK13539 cytochrome c biogenes 95.2 0.15 3.3E-06 50.7 10.5 25 203-227 27-51 (207)
377 cd02027 APSK Adenosine 5'-phos 95.2 0.13 2.9E-06 47.9 9.4 22 206-227 1-22 (149)
378 PF08298 AAA_PrkA: PrkA AAA do 95.2 0.024 5.2E-07 59.3 4.7 49 179-227 59-111 (358)
379 COG1703 ArgK Putative periplas 95.2 0.026 5.7E-07 56.9 4.7 63 190-252 37-99 (323)
380 KOG0736 Peroxisome assembly fa 95.2 0.5 1.1E-05 54.0 15.0 94 181-297 672-775 (953)
381 cd02025 PanK Pantothenate kina 95.2 0.062 1.4E-06 53.7 7.5 22 206-227 1-22 (220)
382 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.1 0.21 4.5E-06 50.3 11.5 25 203-227 47-71 (224)
383 cd03215 ABC_Carb_Monos_II This 95.1 0.096 2.1E-06 50.9 8.7 25 203-227 25-49 (182)
384 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.035 7.6E-07 55.3 5.7 23 204-226 29-51 (213)
385 PRK08233 hypothetical protein; 95.1 0.016 3.6E-07 56.3 3.3 24 204-227 3-26 (182)
386 COG1419 FlhF Flagellar GTP-bin 95.1 0.35 7.7E-06 51.7 13.2 101 203-310 202-309 (407)
387 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.072 1.6E-06 50.3 7.5 114 204-329 25-145 (157)
388 PRK08972 fliI flagellum-specif 95.1 0.079 1.7E-06 57.7 8.4 99 203-305 161-272 (444)
389 TIGR03771 anch_rpt_ABC anchore 95.1 0.27 5.9E-06 49.5 12.0 24 204-227 6-29 (223)
390 PRK05917 DNA polymerase III su 95.0 0.58 1.3E-05 48.4 14.3 134 191-342 7-154 (290)
391 PF07726 AAA_3: ATPase family 95.0 0.012 2.7E-07 51.8 1.9 28 207-236 2-29 (131)
392 PRK12726 flagellar biosynthesi 95.0 0.23 4.9E-06 53.0 11.4 100 203-307 205-310 (407)
393 PRK05480 uridine/cytidine kina 95.0 0.018 3.9E-07 57.4 3.3 25 203-227 5-29 (209)
394 PF07728 AAA_5: AAA domain (dy 95.0 0.032 6.9E-07 51.5 4.7 86 207-308 2-89 (139)
395 PF08433 KTI12: Chromatin asso 95.0 0.038 8.2E-07 56.9 5.7 23 205-227 2-24 (270)
396 PRK14721 flhF flagellar biosyn 95.0 0.22 4.7E-06 54.5 11.6 25 203-227 190-214 (420)
397 PTZ00088 adenylate kinase 1; P 95.0 0.029 6.2E-07 56.3 4.6 21 207-227 9-29 (229)
398 KOG3347 Predicted nucleotide k 95.0 0.035 7.6E-07 49.6 4.5 69 204-285 7-75 (176)
399 TIGR00150 HI0065_YjeE ATPase, 95.0 0.029 6.3E-07 50.4 4.1 39 190-228 8-46 (133)
400 COG0396 sufC Cysteine desulfur 95.0 0.28 6.2E-06 47.8 10.9 26 203-228 29-54 (251)
401 TIGR00235 udk uridine kinase. 95.0 0.019 4.1E-07 57.2 3.2 26 202-227 4-29 (207)
402 PF07724 AAA_2: AAA domain (Cd 95.0 0.022 4.7E-07 54.4 3.4 40 204-245 3-43 (171)
403 COG4088 Predicted nucleotide k 94.9 0.032 6.8E-07 52.9 4.3 23 205-227 2-24 (261)
404 cd03263 ABC_subfamily_A The AB 94.9 0.19 4.2E-06 50.5 10.5 25 203-227 27-51 (220)
405 cd01125 repA Hexameric Replica 94.9 0.14 3E-06 52.3 9.5 22 206-227 3-24 (239)
406 PRK12597 F0F1 ATP synthase sub 94.9 0.066 1.4E-06 59.1 7.4 94 203-297 142-248 (461)
407 KOG1051 Chaperone HSP104 and r 94.9 0.14 3E-06 60.6 10.3 115 181-309 562-685 (898)
408 CHL00206 ycf2 Ycf2; Provisiona 94.9 0.17 3.8E-06 63.8 11.6 25 203-227 1629-1653(2281)
409 TIGR03522 GldA_ABC_ATP gliding 94.9 0.3 6.5E-06 51.7 12.2 25 203-227 27-51 (301)
410 cd03235 ABC_Metallic_Cations A 94.8 0.19 4.1E-06 50.3 10.0 25 203-227 24-48 (213)
411 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.092 2E-06 54.1 7.8 41 202-244 34-74 (259)
412 PRK14723 flhF flagellar biosyn 94.8 0.22 4.8E-06 58.2 11.6 24 204-227 185-208 (767)
413 PRK13543 cytochrome c biogenes 94.8 0.35 7.5E-06 48.4 11.8 25 203-227 36-60 (214)
414 PTZ00185 ATPase alpha subunit; 94.8 0.21 4.6E-06 55.0 10.6 103 203-305 188-309 (574)
415 PF00910 RNA_helicase: RNA hel 94.8 0.015 3.3E-07 50.7 1.7 21 207-227 1-21 (107)
416 TIGR02329 propionate_PrpR prop 94.8 0.51 1.1E-05 53.7 14.2 47 181-227 212-258 (526)
417 TIGR00554 panK_bact pantothena 94.8 0.11 2.4E-06 53.9 8.3 79 202-286 60-141 (290)
418 PRK08149 ATP synthase SpaL; Va 94.7 0.12 2.5E-06 56.6 8.7 91 203-297 150-252 (428)
419 PRK09544 znuC high-affinity zi 94.7 0.2 4.3E-06 51.4 10.2 25 203-227 29-53 (251)
420 PRK08927 fliI flagellum-specif 94.7 0.11 2.4E-06 56.8 8.5 99 203-305 157-268 (442)
421 COG0465 HflB ATP-dependent Zn 94.7 0.28 6E-06 55.5 11.8 177 178-381 147-356 (596)
422 PRK06547 hypothetical protein; 94.7 0.026 5.7E-07 53.8 3.3 26 202-227 13-38 (172)
423 PF00158 Sigma54_activat: Sigm 94.7 0.099 2.1E-06 49.7 7.2 45 183-227 1-45 (168)
424 KOG0735 AAA+-type ATPase [Post 94.7 1 2.2E-05 51.2 15.6 174 182-381 668-871 (952)
425 PRK05922 type III secretion sy 94.7 0.15 3.2E-06 55.8 9.4 99 203-305 156-267 (434)
426 TIGR00708 cobA cob(I)alamin ad 94.7 0.1 2.2E-06 49.2 7.1 117 204-324 5-140 (173)
427 cd02021 GntK Gluconate kinase 94.7 0.38 8.3E-06 44.9 11.2 22 206-227 1-22 (150)
428 cd01132 F1_ATPase_alpha F1 ATP 94.6 0.15 3.2E-06 52.0 8.6 102 203-308 68-184 (274)
429 cd01129 PulE-GspE PulE/GspE Th 94.6 0.12 2.5E-06 53.4 8.0 108 184-306 62-169 (264)
430 cd03264 ABC_drug_resistance_li 94.6 0.11 2.3E-06 51.9 7.7 22 206-227 27-48 (211)
431 TIGR01420 pilT_fam pilus retra 94.6 0.065 1.4E-06 57.8 6.5 111 204-326 122-232 (343)
432 PRK05986 cob(I)alamin adenolsy 94.6 0.17 3.7E-06 48.5 8.5 120 203-324 21-158 (191)
433 PRK05201 hslU ATP-dependent pr 94.6 0.065 1.4E-06 57.7 6.2 78 180-259 14-107 (443)
434 TIGR01360 aden_kin_iso1 adenyl 94.6 0.028 6E-07 55.0 3.3 25 203-227 2-26 (188)
435 TIGR02655 circ_KaiC circadian 94.6 0.12 2.6E-06 58.6 8.8 65 191-260 250-314 (484)
436 PRK06995 flhF flagellar biosyn 94.6 0.29 6.3E-06 54.5 11.4 24 204-227 256-279 (484)
437 PF00625 Guanylate_kin: Guanyl 94.5 0.034 7.3E-07 54.1 3.7 37 204-242 2-38 (183)
438 TIGR03498 FliI_clade3 flagella 94.5 0.14 3E-06 56.1 8.7 98 203-304 139-249 (418)
439 PF13481 AAA_25: AAA domain; P 94.5 0.06 1.3E-06 52.9 5.6 43 204-246 32-82 (193)
440 COG1643 HrpA HrpA-like helicas 94.5 0.19 4.2E-06 59.5 10.4 135 187-327 52-208 (845)
441 PRK03839 putative kinase; Prov 94.5 0.024 5.1E-07 55.1 2.6 22 206-227 2-23 (180)
442 PRK06793 fliI flagellum-specif 94.5 0.35 7.6E-06 53.0 11.7 124 203-329 155-291 (432)
443 PRK11823 DNA repair protein Ra 94.5 0.095 2.1E-06 58.5 7.6 53 191-245 67-119 (446)
444 TIGR03574 selen_PSTK L-seryl-t 94.5 0.098 2.1E-06 53.8 7.2 22 206-227 1-22 (249)
445 PRK04040 adenylate kinase; Pro 94.5 0.03 6.4E-07 54.5 3.1 24 204-227 2-25 (188)
446 PRK12678 transcription termina 94.5 0.09 2E-06 58.4 7.0 100 192-297 405-514 (672)
447 PRK12727 flagellar biosynthesi 94.5 0.099 2.1E-06 58.1 7.4 25 203-227 349-373 (559)
448 cd03244 ABCC_MRP_domain2 Domai 94.5 0.3 6.5E-06 49.1 10.6 25 203-227 29-53 (221)
449 cd01136 ATPase_flagellum-secre 94.5 0.17 3.8E-06 53.3 8.9 91 203-297 68-170 (326)
450 cd03240 ABC_Rad50 The catalyti 94.5 0.26 5.5E-06 48.8 9.8 52 278-329 131-188 (204)
451 COG0467 RAD55 RecA-superfamily 94.4 0.075 1.6E-06 55.0 6.3 42 202-245 21-62 (260)
452 cd03233 ABC_PDR_domain1 The pl 94.4 0.41 8.8E-06 47.3 11.2 25 203-227 32-56 (202)
453 TIGR02868 CydC thiol reductant 94.4 0.22 4.8E-06 57.7 10.8 25 203-227 360-384 (529)
454 cd03243 ABC_MutS_homologs The 94.4 0.049 1.1E-06 53.9 4.6 22 205-226 30-51 (202)
455 PRK09099 type III secretion sy 94.4 0.15 3.2E-06 56.1 8.6 99 203-304 162-272 (441)
456 PRK00279 adk adenylate kinase; 94.4 0.078 1.7E-06 53.1 6.1 22 206-227 2-23 (215)
457 PRK06217 hypothetical protein; 94.4 0.064 1.4E-06 52.2 5.3 23 206-228 3-25 (183)
458 cd03232 ABC_PDR_domain2 The pl 94.4 0.21 4.6E-06 48.9 9.0 25 203-227 32-56 (192)
459 cd03237 ABC_RNaseL_inhibitor_d 94.4 0.28 6.1E-06 50.1 10.2 25 203-227 24-48 (246)
460 KOG0652 26S proteasome regulat 94.4 0.88 1.9E-05 44.8 12.7 47 181-227 171-228 (424)
461 PRK06936 type III secretion sy 94.3 0.16 3.4E-06 55.6 8.6 99 203-305 161-272 (439)
462 COG1066 Sms Predicted ATP-depe 94.3 0.19 4.1E-06 53.3 8.7 97 191-296 80-178 (456)
463 PRK09435 membrane ATPase/prote 94.3 0.19 4.1E-06 53.2 8.9 37 191-227 43-79 (332)
464 PRK10923 glnG nitrogen regulat 94.3 0.97 2.1E-05 51.5 15.5 47 181-227 138-184 (469)
465 PRK13537 nodulation ABC transp 94.3 0.42 9E-06 50.7 11.5 24 204-227 33-56 (306)
466 PF06745 KaiC: KaiC; InterPro 94.2 0.048 1.1E-06 55.1 4.2 42 202-245 17-59 (226)
467 cd03298 ABC_ThiQ_thiamine_tran 94.2 0.17 3.7E-06 50.5 8.2 25 203-227 23-47 (211)
468 COG0541 Ffh Signal recognition 94.2 0.57 1.2E-05 50.3 12.0 57 203-262 99-157 (451)
469 PRK09280 F0F1 ATP synthase sub 94.2 0.13 2.8E-06 56.6 7.6 102 203-305 143-258 (463)
470 PF06309 Torsin: Torsin; Inte 94.2 0.052 1.1E-06 47.8 3.7 47 181-227 25-76 (127)
471 cd03285 ABC_MSH2_euk MutS2 hom 94.2 0.05 1.1E-06 54.5 4.2 24 203-226 29-52 (222)
472 PRK00625 shikimate kinase; Pro 94.2 0.029 6.3E-07 53.6 2.4 22 206-227 2-23 (173)
473 KOG0726 26S proteasome regulat 94.2 0.59 1.3E-05 46.9 11.2 46 182-227 186-242 (440)
474 PRK14738 gmk guanylate kinase; 94.1 0.042 9E-07 54.5 3.4 28 200-227 9-36 (206)
475 cd03287 ABC_MSH3_euk MutS3 hom 94.1 0.046 1E-06 54.5 3.7 24 203-226 30-53 (222)
476 PRK10463 hydrogenase nickel in 94.1 0.24 5.1E-06 51.1 8.8 26 202-227 102-127 (290)
477 PRK00131 aroK shikimate kinase 94.1 0.037 8E-07 53.4 3.0 25 203-227 3-27 (175)
478 cd03283 ABC_MutS-like MutS-lik 94.1 0.063 1.4E-06 52.8 4.6 22 205-226 26-47 (199)
479 PRK10751 molybdopterin-guanine 94.1 0.045 9.8E-07 51.8 3.4 25 203-227 5-29 (173)
480 cd01130 VirB11-like_ATPase Typ 94.1 0.071 1.5E-06 52.0 4.9 97 204-307 25-121 (186)
481 cd03369 ABCC_NFT1 Domain 2 of 94.1 0.53 1.2E-05 46.8 11.3 25 203-227 33-57 (207)
482 COG1131 CcmA ABC-type multidru 94.1 0.51 1.1E-05 49.6 11.6 25 203-227 30-54 (293)
483 TIGR02322 phosphon_PhnN phosph 94.1 0.037 8E-07 53.6 2.9 23 205-227 2-24 (179)
484 PRK07594 type III secretion sy 94.0 0.17 3.7E-06 55.4 8.1 99 203-305 154-265 (433)
485 TIGR03305 alt_F1F0_F1_bet alte 94.0 0.12 2.6E-06 56.6 7.0 103 203-306 137-253 (449)
486 TIGR00416 sms DNA repair prote 94.0 0.18 3.9E-06 56.3 8.4 53 190-244 80-132 (454)
487 cd00227 CPT Chloramphenicol (C 94.0 0.038 8.2E-07 53.3 2.8 23 205-227 3-25 (175)
488 PF02463 SMC_N: RecF/RecN/SMC 94.0 0.43 9.4E-06 47.9 10.6 43 288-330 160-205 (220)
489 TIGR01188 drrA daunorubicin re 94.0 0.12 2.7E-06 54.7 6.9 25 203-227 18-42 (302)
490 cd02023 UMPK Uridine monophosp 94.0 0.032 7E-07 55.1 2.3 22 206-227 1-22 (198)
491 TIGR03740 galliderm_ABC gallid 94.0 0.48 1E-05 47.7 10.8 25 203-227 25-49 (223)
492 smart00534 MUTSac ATPase domai 93.9 0.075 1.6E-06 51.7 4.7 21 206-226 1-21 (185)
493 PF03193 DUF258: Protein of un 93.9 0.085 1.8E-06 49.2 4.8 36 187-227 23-58 (161)
494 PRK13765 ATP-dependent proteas 93.9 0.088 1.9E-06 60.9 5.9 75 181-261 31-105 (637)
495 cd00071 GMPK Guanosine monopho 93.9 0.044 9.5E-07 50.2 2.8 22 206-227 1-22 (137)
496 PRK13545 tagH teichoic acids e 93.9 0.59 1.3E-05 52.4 12.0 25 203-227 49-73 (549)
497 TIGR03575 selen_PSTK_euk L-ser 93.9 0.3 6.5E-06 51.9 9.3 21 207-227 2-22 (340)
498 cd02024 NRK1 Nicotinamide ribo 93.9 0.036 7.7E-07 53.5 2.2 22 206-227 1-22 (187)
499 PF10236 DAP3: Mitochondrial r 93.8 2.6 5.6E-05 44.7 16.4 48 336-383 258-306 (309)
500 PRK00889 adenylylsulfate kinas 93.8 0.05 1.1E-06 52.4 3.3 25 203-227 3-27 (175)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-88 Score=788.49 Aligned_cols=829 Identities=31% Similarity=0.442 Sum_probs=646.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhhhhhhHHHHHHHh
Q 002750 3 DAIVSFVVQKLGDYLIQEAIFLKEVRNEVESLKNTLGWMQCFVKDAEEKQDDNPLIRKWVSEIREIAYDAEDVLDKFLLQ 82 (885)
Q Consensus 3 ~~~v~~~~~kl~~~l~~e~~~~~~v~~~i~~L~~~l~~i~~~l~~ae~~~~~~~~~~~wl~~lr~~ayd~eD~iD~~~~~ 82 (885)
++.++..++|+.+++.+++..+.++++.+..|++.|..+++++.|++.++.....+..|.+.+++++|++||.++.|...
T Consensus 2 ~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~ 81 (889)
T KOG4658|consen 2 GACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVE 81 (889)
T ss_pred CeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhcCCCCCCCCCCCchhhHhhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhhchhccccccccchhhhhhhchh
Q 002750 83 VHKGGSSGISGKGSKSKFFASIKAGCGLFHKGKEKVKLYSIGEEIAALRKRLDDSARNRELFCLQDINYNKREAAAENSK 162 (885)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (885)
...+...+ ...+++. -.++.|. ...+++.+..+..+.+|+-.+.+..+.++....... ....
T Consensus 82 ~~~~~~~~--~l~~~~~---~~~~~c~-------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~------~~~~ 143 (889)
T KOG4658|consen 82 EIERKAND--LLSTRSV---ERQRLCL-------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEV------VGES 143 (889)
T ss_pred HHHHHHhH--HhhhhHH---HHHHHhh-------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceec------cccc
Confidence 76542221 0000000 1222221 145567777888888888888888877775542211 0000
Q ss_pred HHHhhhhhcccccccccccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcc-cccccceeEEEe
Q 002750 163 AHQKLKQLRRSASFYAVEENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHND-VKHKFACCAWVS 241 (885)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~ 241 (885)
. .....+.+.| ...... ||.+..++++.+.|.+.+. .+++|+||||+||||||+.++|+.. ++.+|+.++||+
T Consensus 144 ~--~~~~~~e~~~-~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~ 217 (889)
T KOG4658|consen 144 L--DPREKVETRP-IQSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV 217 (889)
T ss_pred c--cchhhcccCC-CCcccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE
Confidence 0 0112233334 333334 9999999999999988764 9999999999999999999999988 999999999999
Q ss_pred ccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHhhCCCCCCCcEEEEEe
Q 002750 242 VSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTT 321 (885)
Q Consensus 242 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTt 321 (885)
||+.++..+++.+|+..++..... ......++++..+.+.|+++||+|||||||+..+|+.+..++|...+||+|++||
T Consensus 218 VSk~f~~~~iq~~Il~~l~~~~~~-~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTT 296 (889)
T KOG4658|consen 218 VSKEFTTRKIQQTILERLGLLDEE-WEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTT 296 (889)
T ss_pred EcccccHHhHHHHHHHHhccCCcc-cchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEe
Confidence 999999999999999999875442 2222347889999999999999999999999999999999999998999999999
Q ss_pred cchHHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCC-CChhHHHHHHHHHHHcCCchHHHHHHHhhhc-CCChHHHH
Q 002750 322 RIREVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFN-ADEGLEKLGREMLEKCGGLPLAIVVLGGLLS-KKKPQEWR 399 (885)
Q Consensus 322 R~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~-~~~~~~w~ 399 (885)
|++.|+....+....++++.|+++|||+||.+.++.... ..+.++++|++++++|+|+|||++++|+.|+ +.+..+|.
T Consensus 297 Rs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~ 376 (889)
T KOG4658|consen 297 RSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWR 376 (889)
T ss_pred ccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHH
Confidence 999999995566889999999999999999999988743 3566899999999999999999999999999 88888999
Q ss_pred HHHHHHHHhhhcC----chhhhhhhhcccccChHhhhHHHhhhccCCCCCccChHHHHHHHHHcCcccCCCCCccHHHHH
Q 002750 400 IVRDHIWRHLRAD----SIQISHLLDLSFNDLSYQLKLCFLYLGIFPEDADINIERLIRLIVAEGFIDQNEDDQVMEDVA 475 (885)
Q Consensus 400 ~~~~~l~~~~~~~----~~~~~~~l~~sy~~L~~~~k~c~~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~ 475 (885)
++.+.+.+....+ .+.+..++.+||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.....+..++++|
T Consensus 377 ~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G 456 (889)
T KOG4658|consen 377 RALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVG 456 (889)
T ss_pred HHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcch
Confidence 9999988774433 568899999999999999999999999999999999999999999999996656688899999
Q ss_pred HHHHHHHHHhcccccccccCcceeEEEEChhHHHHHHHHhh-----hcCeeEEeccccC-cccccccCcceeeeeecC--
Q 002750 476 KDILNELINRSLIQIGKISWGRIATCRVHDLLRDLAIQKAK-----ELNFFHICAQANR-QTRPLLVSSCRRQAAYSG-- 547 (885)
Q Consensus 476 ~~~l~~L~~~sll~~~~~~~~~~~~~~~H~lv~d~~~~~~~-----~e~~~~~~~~~~~-~~~~~~~~~~r~l~~~~~-- 547 (885)
+.|+.+|++++|++..... ++..+|+|||+|||+|+++|+ +|+++...+.+.. ..........||++.+++
T Consensus 457 ~~~i~~LV~~~Ll~~~~~~-~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~ 535 (889)
T KOG4658|consen 457 YDYIEELVRASLLIEERDE-GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKI 535 (889)
T ss_pred HHHHHHHHHHHHHhhcccc-cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccch
Confidence 9999999999999987632 566899999999999999999 7875544321111 011234577899999863
Q ss_pred ccccCCCCCccceeEEeeccchhhhHHHhhhHHhHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecC
Q 002750 548 YFWSQDDNNLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRN 627 (885)
Q Consensus 548 ~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~ 627 (885)
........+++++||.+.++.. ........+|..++.||||||++|.. +. .+|..|++|.|||||++++
T Consensus 536 ~~~~~~~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~-----l~--~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 536 EHIAGSSENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSS-----LS--KLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred hhccCCCCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCc-----cC--cCChHHhhhhhhhcccccC
Confidence 3444555677899999998752 01124457799999999999998774 55 8999999999999999999
Q ss_pred CCCCCCCccccCCCCccEEecCC--CcccCChhhccccccccccccc----cccccccCccCCCccCccccccccc---c
Q 002750 628 SPIDNLPPSIEKLQRLQTLDLSD--TLCGIPTEISKLTELRHLIGNF----SGYLPIENLTNLRTLKYVSVESWNR---L 698 (885)
Q Consensus 628 ~~i~~lp~~i~~L~~L~~L~Ls~--~~~~lp~~i~~L~~L~~L~~~~----~~~~~~~~l~~L~~L~~~~~~~~~~---~ 698 (885)
+.|+.||.++++|..|++||+.. .+..+|..+..|++||+|.... .+...++.+.+|++|..+.+..... .
T Consensus 605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e 684 (889)
T KOG4658|consen 605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLE 684 (889)
T ss_pred CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHh
Confidence 99999999999999999999997 3445666677799999993222 2223345667777777766654433 3
Q ss_pred CCcccCCCCeeEeecccccchhhccchhhhhccCCCceEEeeecCCccc--cccccC--C-CCCCcceEEEeee-cCCCC
Q 002750 699 SPDKLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERSF--DLLQPL--C-DCPCLSDLRLRGK-IEKLP 772 (885)
Q Consensus 699 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~--~~~~~l--~-~~~~L~~L~l~~~-~~~lp 772 (885)
.+..++.|..+...-........... ..+..+.+|+.|.+..+..... ...... . .++++..+.+.++ ....+
T Consensus 685 ~l~~~~~L~~~~~~l~~~~~~~~~~~-~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 685 DLLGMTRLRSLLQSLSIEGCSKRTLI-SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred hhhhhHHHHHHhHhhhhcccccceee-cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc
Confidence 34444444433222110001112222 6677888888888876654211 111111 1 1334555555444 34566
Q ss_pred hhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeecCCCcceEEcC----
Q 002750 773 EDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVDELEEWQVEE---- 848 (885)
Q Consensus 773 ~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~---- 848 (885)
.|... .++|+.|.+..|....++++....+..+..+.+..+.+.+.......++||++..+.+....+..|....
T Consensus 764 ~~~~f-~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l 842 (889)
T KOG4658|consen 764 TWLLF-APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKL 842 (889)
T ss_pred chhhc-cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCccc
Confidence 67654 5999999999999888999999999999988888888888666777889999999999966688887766
Q ss_pred Cccccccceeeccc-cc-CCCCcc
Q 002750 849 GAMPRLRGLRIPEH-LK-SRIPER 870 (885)
Q Consensus 849 ~~~~~L~~L~l~~c-~~-~~lp~~ 870 (885)
+.||.+.++.+.+| .. ..+|.+
T Consensus 843 ~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 843 GKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred ccCccccccceeccccceeecCCc
Confidence 78999999999997 44 777775
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.1e-57 Score=559.72 Aligned_cols=650 Identities=21% Similarity=0.256 Sum_probs=417.0
Q ss_pred ccccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEec---ccc---------
Q 002750 178 AVEENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSV---SQE--------- 245 (885)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~--------- 245 (885)
.+.+.+|||+++++++..+|.-.....++|+|+||||+||||||+++|+. +..+|++.+|+.. ...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhcccccc
Confidence 45568999999999999998766667999999999999999999999987 7788988887742 111
Q ss_pred --cc-HHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHhhCCCCCCCcEEEEEec
Q 002750 246 --YR-TEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTTR 322 (885)
Q Consensus 246 --~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR 322 (885)
+. ...+..+++.++..... ..... ...+++.++++|+||||||||+...|+.+.....+.++||+||||||
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~--~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTr 332 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKD--IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITK 332 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCC--cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeC
Confidence 01 11234444444433211 00001 13467778999999999999999999999887777788999999999
Q ss_pred chHHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCChHHHHHHH
Q 002750 323 IREVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLSKKKPQEWRIVR 402 (885)
Q Consensus 323 ~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~ 402 (885)
+..++... +..++|+++.+++++||++|+.+||+...+++.+.+++++|+++|+|+|||++++|+.|+.++..+|..++
T Consensus 333 d~~vl~~~-~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l 411 (1153)
T PLN03210 333 DKHFLRAH-GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDML 411 (1153)
T ss_pred cHHHHHhc-CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 99998765 34578999999999999999999998766677789999999999999999999999999977888999999
Q ss_pred HHHHHhhhcCchhhhhhhhcccccChH-hhhHHHhhhccCCCCCccChHHHHHHHHHcCcccCCCCCccHHHHHHHHHHH
Q 002750 403 DHIWRHLRADSIQISHLLDLSFNDLSY-QLKLCFLYLGIFPEDADINIERLIRLIVAEGFIDQNEDDQVMEDVAKDILNE 481 (885)
Q Consensus 403 ~~l~~~~~~~~~~~~~~l~~sy~~L~~-~~k~c~~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~ 481 (885)
..+.+.. ...+..+|++||+.|++ ..|.||+++|+|+.+..++ .+..|.+.+... ++..++.
T Consensus 412 ~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~-----------~~~~l~~ 474 (1153)
T PLN03210 412 PRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD-----------VNIGLKN 474 (1153)
T ss_pred HHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC-----------chhChHH
Confidence 9887643 45799999999999986 5999999999999886553 467787766541 2345889
Q ss_pred HHHhcccccccccCcceeEEEEChhHHHHHHHHhhhcC-------eeEEeccccC-cccccccCcceeeeeec-C-----
Q 002750 482 LINRSLIQIGKISWGRIATCRVHDLLRDLAIQKAKELN-------FFHICAQANR-QTRPLLVSSCRRQAAYS-G----- 547 (885)
Q Consensus 482 L~~~sll~~~~~~~~~~~~~~~H~lv~d~~~~~~~~e~-------~~~~~~~~~~-~~~~~~~~~~r~l~~~~-~----- 547 (885)
|++++|++... ..+.|||++|++++.+++++. |.....+-.. .........++.+++.- .
T Consensus 475 L~~ksLi~~~~------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~ 548 (1153)
T PLN03210 475 LVDKSLIHVRE------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELH 548 (1153)
T ss_pred HHhcCCEEEcC------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceee
Confidence 99999998643 358999999999999987763 1110000000 00000223445554431 1
Q ss_pred ccccCCCCCccceeEEeeccchhhhH-HHhhhHHhHhc-----------------------cCceeEEEecccccccccc
Q 002750 548 YFWSQDDNNLLSRSLLHFNYEREYIF-QVERDLRWLFT-----------------------SFSLLRVYDAEVVNRFRTG 603 (885)
Q Consensus 548 ~~~~~~~~~~~lrsl~~~~~~~~~~~-~~~~~~~~~~~-----------------------~~~~Lr~L~L~~~~~~~~~ 603 (885)
........+.+++.|.+..+...... ..+ .++.-|. .+.+|+.|+++++.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~-~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~----- 622 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRW-HLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK----- 622 (1153)
T ss_pred ecHHHHhcCccccEEEEeccccccccccee-ecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcc-----
Confidence 11112344566666655433110000 000 0111121 23445555555554
Q ss_pred ccccCCCchhhcccccccEEEecCCC-CCCCCccccCCCCccEEecCC--CcccCChhhcccccccccc-c--ccccccc
Q 002750 604 IFSEFPLPVEIGQLIHLKYLRLRNSP-IDNLPPSIEKLQRLQTLDLSD--TLCGIPTEISKLTELRHLI-G--NFSGYLP 677 (885)
Q Consensus 604 ~l~~~~lp~~i~~l~~Lr~L~L~~~~-i~~lp~~i~~L~~L~~L~Ls~--~~~~lp~~i~~L~~L~~L~-~--~~~~~~~ 677 (885)
+. .+|..+..+++|++|+|+++. ++.+| .++.+++|++|+|++ ++..+|..+.++++|+.|. . ......|
T Consensus 623 -l~--~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 623 -LE--KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred -cc--ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence 44 455555555555555555543 44444 355555566666654 2444555555556655551 1 1111111
Q ss_pred cc-CccCCCccCccccccccccCC-cccCCCCeeEeecccccchhhccchhhhhccCCCceEEeeecCCcc-----cccc
Q 002750 678 IE-NLTNLRTLKYVSVESWNRLSP-DKLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERS-----FDLL 750 (885)
Q Consensus 678 ~~-~l~~L~~L~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~-----~~~~ 750 (885)
.+ ++++|+.|...++.. ...+ ....+|+.|++.++.+.... . ...+++|..|.+....... ..+.
T Consensus 699 ~~i~l~sL~~L~Lsgc~~--L~~~p~~~~nL~~L~L~~n~i~~lP-----~-~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 699 TGINLKSLYRLNLSGCSR--LKSFPDISTNISWLDLDETAIEEFP-----S-NLRLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred CcCCCCCCCEEeCCCCCC--ccccccccCCcCeeecCCCcccccc-----c-cccccccccccccccchhhccccccccc
Confidence 11 233333332222211 1111 12345566666655433211 1 1134455555543211100 0000
Q ss_pred -ccCCCCCCcceEEEeee--cCCCChhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCC
Q 002750 751 -QPLCDCPCLSDLRLRGK--IEKLPEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKG 827 (885)
Q Consensus 751 -~~l~~~~~L~~L~l~~~--~~~lp~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 827 (885)
.....+++|+.|++++| +..+|.++.. +++|+.|+|++|......|..+ ++++|+.|+|++|..-. .+ ...
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~-~~---p~~ 844 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR-TF---PDI 844 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc-cc---ccc
Confidence 01123568888999887 5678888877 4899999999885444444333 68888999988764322 11 122
Q ss_pred CcccceeEeecCCCcceEEcCCccccccceeeccccc-CCCCcc---ccCCCCCCCCCCC
Q 002750 828 FPRLEILQLLVDELEEWQVEEGAMPRLRGLRIPEHLK-SRIPER---LRSIPPPAEGECE 883 (885)
Q Consensus 828 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~-~~lp~~---l~~L~~L~~~~c~ 883 (885)
.++|+.|+|+.|.++.+|.....+++|+.|++++|+. +.+|.. +.+|+.|.+.+|+
T Consensus 845 ~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 4678888888888888887777888999999988887 667654 4555566777775
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.6e-43 Score=370.45 Aligned_cols=278 Identities=38% Similarity=0.605 Sum_probs=231.1
Q ss_pred ccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCC
Q 002750 186 FEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPS 265 (885)
Q Consensus 186 r~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~ 265 (885)
||.++++|.+.|.....+.++|+|+||||+||||||..++++..++.+|+.++|+++++..+...++..|+.++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999998667899999999999999999999998877889999999999999999999999999999886442
Q ss_pred ccccccHHHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHhhCCCCCCCcEEEEEecchHHhhccCCCCceeecCCCChh
Q 002750 266 NLEKMREEDLERCLYQSLQGYSYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTTRIREVAERSDERTHAYELPFLRPD 345 (885)
Q Consensus 266 ~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~~~l~~L~~~ 345 (885)
.....+.++....+.+.++++++||||||||+...|+.+...++....|++||||||+..++.........+++++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 22445677899999999999999999999999999999988888777899999999999988776444678999999999
Q ss_pred hHHHHHHHHHhcCC-CCChhHHHHHHHHHHHcCCchHHHHHHHhhhc-CCChHHHHHHHHHHHHhhhc---Cchhhhhhh
Q 002750 346 ESWKLFCEKAFQSF-NADEGLEKLGREMLEKCGGLPLAIVVLGGLLS-KKKPQEWRIVRDHIWRHLRA---DSIQISHLL 420 (885)
Q Consensus 346 e~~~lf~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~-~~~~~~w~~~~~~l~~~~~~---~~~~~~~~l 420 (885)
|+++||.+.++... ...+..++.+++|+++|+|+|||++++|++++ +.+..+|..+++++.+.... ....+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999997765 22455678899999999999999999999997 44667999999988777643 267899999
Q ss_pred hcccccChHhhhHHHhhhccCCCCCccChHHHHHHHHHcCccc
Q 002750 421 DLSFNDLSYQLKLCFLYLGIFPEDADINIERLIRLIVAEGFID 463 (885)
Q Consensus 421 ~~sy~~L~~~~k~c~~~~~~fp~~~~i~~~~li~~w~a~g~i~ 463 (885)
.+||+.||+++|.||+|||+||+++.|+++.++.+|+++|++.
T Consensus 241 ~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 241 ELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred eechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 9999999999999999999999999999999999999999993
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.1e-24 Score=228.49 Aligned_cols=307 Identities=18% Similarity=0.180 Sum_probs=201.3
Q ss_pred CcceeeeeecC---ccccCCCCCccceeEEeeccchhhhHHHhhhHHhHhccCceeEEEeccccccccccccccCCCchh
Q 002750 537 SSCRRQAAYSG---YFWSQDDNNLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVE 613 (885)
Q Consensus 537 ~~~r~l~~~~~---~~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~ 613 (885)
.+..|+++.++ .........+.+|++.+..+.... ..++.-+-++..|.+|||++|. ++ +.|..
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn-----sGiP~diF~l~dLt~lDLShNq------L~--EvP~~ 121 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN-----SGIPTDIFRLKDLTILDLSHNQ------LR--EVPTN 121 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc-----CCCCchhcccccceeeecchhh------hh--hcchh
Confidence 34556666532 223344567788888877765432 1233445578888888888888 88 78888
Q ss_pred hcccccccEEEecCCCCCCCCccc-cCCCCccEEecCCC-cccCChhhccccccccc--cccccccccccCccCCCccCc
Q 002750 614 IGQLIHLKYLRLRNSPIDNLPPSI-EKLQRLQTLDLSDT-LCGIPTEISKLTELRHL--IGNFSGYLPIENLTNLRTLKY 689 (885)
Q Consensus 614 i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~Ls~~-~~~lp~~i~~L~~L~~L--~~~~~~~~~~~~l~~L~~L~~ 689 (885)
+.+-+++-.|+||+|+|..||..+ -+|..|-+||||+| +..+|+.+..|.+|+.| +++......+..+++
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs------ 195 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS------ 195 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc------
Confidence 888888888888888888888764 67888888888885 55688888888888877 222222222223333
Q ss_pred cccccccccCCcccCCCCeeEeecccccchhhccchhhhhccCCCceEEeeecCCccccccccCCCCCCcceEEEeee-c
Q 002750 690 VSVESWNRLSPDKLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK-I 768 (885)
Q Consensus 690 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~ 768 (885)
+++|..|++++.+.+- ...+ .++..+.+|..++++.++. ...++.+..+++|+.|+|+|| +
T Consensus 196 -------------mtsL~vLhms~TqRTl--~N~P-tsld~l~NL~dvDlS~N~L--p~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 196 -------------MTSLSVLHMSNTQRTL--DNIP-TSLDDLHNLRDVDLSENNL--PIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred -------------chhhhhhhcccccchh--hcCC-CchhhhhhhhhccccccCC--CcchHHHhhhhhhheeccCcCce
Confidence 3344444444432211 1111 3344445555555543322 124555666777777777776 5
Q ss_pred CCCChhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeecCCCcceEEcC
Q 002750 769 EKLPEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVDELEEWQVEE 848 (885)
Q Consensus 769 ~~lp~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~ 848 (885)
+.+.-..... .+|+.|+||.|+++ ..|+.+.+|++|+.|.+.+|+++-+.++...+.+.+|+++...+|.|+-+|...
T Consensus 258 teL~~~~~~W-~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEgl 335 (1255)
T KOG0444|consen 258 TELNMTEGEW-ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGL 335 (1255)
T ss_pred eeeeccHHHH-hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhh
Confidence 5555445554 67888888888875 566777888888888887777776666666667777888877777787777777
Q ss_pred CccccccceeecccccCCCCccccCCCCCCCCCC
Q 002750 849 GAMPRLRGLRIPEHLKSRIPERLRSIPPPAEGEC 882 (885)
Q Consensus 849 ~~~~~L~~L~l~~c~~~~lp~~l~~L~~L~~~~c 882 (885)
.-+++|+.|.|+.|++.++|+++.-|+.|+..+.
T Consensus 336 cRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred hhhHHHHHhcccccceeechhhhhhcCCcceeec
Confidence 7778888888888888778887776666665554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=3e-22 Score=209.32 Aligned_cols=301 Identities=20% Similarity=0.202 Sum_probs=225.4
Q ss_pred CCccceeEEeeccchhhhHHHhhhHHhHhccCceeEEEeccccccccccccccCCCchh-hcccccccEEEecCCCCCCC
Q 002750 555 NNLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVE-IGQLIHLKYLRLRNSPIDNL 633 (885)
Q Consensus 555 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~-i~~l~~Lr~L~L~~~~i~~l 633 (885)
...++..|.+..+.... .-...++.++.||+|||+.|. +. ++|.. +..-.++++|+|++|.|+.+
T Consensus 123 ~sghl~~L~L~~N~I~s------v~se~L~~l~alrslDLSrN~------is--~i~~~sfp~~~ni~~L~La~N~It~l 188 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISS------VTSEELSALPALRSLDLSRNL------IS--EIPKPSFPAKVNIKKLNLASNRITTL 188 (873)
T ss_pred cccceeEEeeecccccc------ccHHHHHhHhhhhhhhhhhch------hh--cccCCCCCCCCCceEEeecccccccc
Confidence 34568888887775432 223557788999999999999 88 66643 55667899999999999988
Q ss_pred C-ccccCCCCccEEecCCC-cccCChh-hcccccccccccccccccc--ccCccCCCccCccccccccccC-----Cccc
Q 002750 634 P-PSIEKLQRLQTLDLSDT-LCGIPTE-ISKLTELRHLIGNFSGYLP--IENLTNLRTLKYVSVESWNRLS-----PDKL 703 (885)
Q Consensus 634 p-~~i~~L~~L~~L~Ls~~-~~~lp~~-i~~L~~L~~L~~~~~~~~~--~~~l~~L~~L~~~~~~~~~~~~-----l~~l 703 (885)
- ..|.+|.+|-+|.|+.| +..+|.. |.+|++|+.|..+.....- .-.+..|..|+.+.+..+.+.. +-.+
T Consensus 189 ~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 189 ETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL 268 (873)
T ss_pred ccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence 4 57889999999999986 6678865 5559999999322211111 1123444444444444444443 4478
Q ss_pred CCCCeeEeecccccchhhccchhhhhccCCCceEEeeecCCccccccccCCCCCCcceEEEeee-cCCCChhhhhcCCCc
Q 002750 704 INLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK-IEKLPEDIHVILPNL 782 (885)
Q Consensus 704 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~lp~~~~~~l~~L 782 (885)
.++++|++..|++..... ..+.+|+.|+.|+++++....+ ....+.-+++|+.|+|+.| +..+++.-+..+..|
T Consensus 269 ~kme~l~L~~N~l~~vn~----g~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNE----GWLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred cccceeecccchhhhhhc----ccccccchhhhhccchhhhhee-ecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 999999999998766544 6678899999999998865444 2345677899999999998 888887766667999
Q ss_pred cEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeE--EeecCCCCcccceeEeecCCCcceEE-cCCccccccceee
Q 002750 783 ECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKK--LFCTAKGFPRLEILQLLVDELEEWQV-EEGAMPRLRGLRI 859 (885)
Q Consensus 783 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l 859 (885)
+.|+|++|.+....-..|..+.+|+.|+|+.|.+.... -...+.++++|+.|+|.+|+|+.++. ....+++|+.|+|
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 99999999998766678999999999999999886521 22335679999999999999999864 3467899999999
Q ss_pred cccccCCC-CccccCC
Q 002750 860 PEHLKSRI-PERLRSI 874 (885)
Q Consensus 860 ~~c~~~~l-p~~l~~L 874 (885)
.+|++.++ |..+..+
T Consensus 424 ~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPM 439 (873)
T ss_pred CCCcceeecccccccc
Confidence 99999444 4445433
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=6.7e-21 Score=236.74 Aligned_cols=308 Identities=22% Similarity=0.246 Sum_probs=157.5
Q ss_pred CccceeEEeeccchhhhHHHhhhHHhHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCC-CCC
Q 002750 556 NLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPID-NLP 634 (885)
Q Consensus 556 ~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~-~lp 634 (885)
.+++++|.+.++.... ..+..+..+++|++|+|++|. +.+ .+|..++++++|++|+|++|.+. .+|
T Consensus 139 l~~L~~L~Ls~n~~~~------~~p~~~~~l~~L~~L~L~~n~------l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p 205 (968)
T PLN00113 139 IPNLETLDLSNNMLSG------EIPNDIGSFSSLKVLDLGGNV------LVG-KIPNSLTNLTSLEFLTLASNQLVGQIP 205 (968)
T ss_pred cCCCCEEECcCCcccc------cCChHHhcCCCCCEEECccCc------ccc-cCChhhhhCcCCCeeeccCCCCcCcCC
Confidence 4555555555543321 123345556666666666655 432 35555556666666666655554 345
Q ss_pred ccccCCCCccEEecCCC-cc-cCChhhcccccccccc---ccccccc--cccCccCCCccCccccccccc-----cCCcc
Q 002750 635 PSIEKLQRLQTLDLSDT-LC-GIPTEISKLTELRHLI---GNFSGYL--PIENLTNLRTLKYVSVESWNR-----LSPDK 702 (885)
Q Consensus 635 ~~i~~L~~L~~L~Ls~~-~~-~lp~~i~~L~~L~~L~---~~~~~~~--~~~~l~~L~~L~~~~~~~~~~-----~~l~~ 702 (885)
..++++++|++|+|++| +. .+|..++++++|++|. +...+.. .++++++|+.| ++..+.. ..+.+
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L---~L~~n~l~~~~p~~l~~ 282 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL---FLYQNKLSGPIPPSIFS 282 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE---ECcCCeeeccCchhHhh
Confidence 55555566666666553 22 2555555555555551 1111111 12223333322 2222111 11334
Q ss_pred cCCCCeeEeecccccchhh---------------------ccchhhhhccCCCceEEeeecCCccccccccCCCCCCcce
Q 002750 703 LINLRELHIEDKEWTREKV---------------------LFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSD 761 (885)
Q Consensus 703 l~~L~~L~l~~~~~~~~~~---------------------~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~ 761 (885)
+++|+.|++++|.+....+ ... ..+..+++|+.|++..+... ..++..+..+++|+.
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~~~~L~~ 360 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFS-GEIPKNLGKHNNLTV 360 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCCc-CcCChHHhCCCCCcE
Confidence 4444444444443322111 000 23334444444444433211 113334445556666
Q ss_pred EEEeee-c-CCCChhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeecC
Q 002750 762 LRLRGK-I-EKLPEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVD 839 (885)
Q Consensus 762 L~l~~~-~-~~lp~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 839 (885)
|++++| + +.+|.++.. +++|+.|++++|.+.+..+..++.+++|+.|+|++|.+++. .+.....+++|+.|+++.|
T Consensus 361 L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 361 LDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE-LPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred EECCCCeeEeeCChhHhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE-CChhHhcCCCCCEEECcCC
Confidence 666554 2 345555554 36666666666666666666677777777777777766652 2333456777777777777
Q ss_pred CCcce-EEcCCccccccceeeccccc-CCCCcc--ccCCCCCCCCCCC
Q 002750 840 ELEEW-QVEEGAMPRLRGLRIPEHLK-SRIPER--LRSIPPPAEGECE 883 (885)
Q Consensus 840 ~l~~l-~~~~~~~~~L~~L~l~~c~~-~~lp~~--l~~L~~L~~~~c~ 883 (885)
.++.. +.....+++|+.|++++|.+ ..+|.. ..+|+.|++.+|.
T Consensus 439 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486 (968)
T ss_pred cccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCc
Confidence 66643 22334677888888888877 555552 3466666666664
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=2.1e-20 Score=232.24 Aligned_cols=307 Identities=23% Similarity=0.303 Sum_probs=167.8
Q ss_pred CCCccceeEEeeccchhhhHHHhhhHHhHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCC-C
Q 002750 554 DNNLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPID-N 632 (885)
Q Consensus 554 ~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~-~ 632 (885)
..++++++|.+.++.... .++..+.++++|++|+|++|. +.+ .+|..++++++|++|++++|.+. .
T Consensus 185 ~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~L~~n~------l~~-~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVG------QIPRELGQMKSLKWIYLGYNN------LSG-EIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred hhCcCCCeeeccCCCCcC------cCChHHcCcCCccEEECcCCc------cCC-cCChhHhcCCCCCEEECcCceeccc
Confidence 345666666666554321 234556677777777777776 543 46667777777777777777765 5
Q ss_pred CCccccCCCCccEEecCCC-cc-cCChhhcccccccccc---cccccccc--ccCccCCCccCccccccccc-----cCC
Q 002750 633 LPPSIEKLQRLQTLDLSDT-LC-GIPTEISKLTELRHLI---GNFSGYLP--IENLTNLRTLKYVSVESWNR-----LSP 700 (885)
Q Consensus 633 lp~~i~~L~~L~~L~Ls~~-~~-~lp~~i~~L~~L~~L~---~~~~~~~~--~~~l~~L~~L~~~~~~~~~~-----~~l 700 (885)
+|..++++++|++|++++| +. .+|..+.++++|++|. +......+ +.++++|+. +++..+.. ..+
T Consensus 252 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~---L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI---LHLFSNNFTGKIPVAL 328 (968)
T ss_pred cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE---EECCCCccCCcCChhH
Confidence 6667777777777777764 32 3666777777777761 22222221 233333333 33333222 124
Q ss_pred cccCCCCeeEeecccccchhhccchhhhhccCCCceEEeeecCCccccccccCCCCCCcceEEEeee-c-CCCChhhhhc
Q 002750 701 DKLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK-I-EKLPEDIHVI 778 (885)
Q Consensus 701 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~-~~lp~~~~~~ 778 (885)
..+++|+.|++++|.+....+ ..+..+.+|+.++++.+.... ..+..+..+++|+.|++++| + +.+|.++..
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p----~~l~~~~~L~~L~Ls~n~l~~-~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~- 402 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIP----KNLGKHNNLTVLDLSTNNLTG-EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA- 402 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCC----hHHhCCCCCcEEECCCCeeEe-eCChhHhCcCCCCEEECcCCEecccCCHHHhC-
Confidence 567777777777776543222 445566777777765443211 12333444455555555544 2 244444444
Q ss_pred CCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCC-----------------------CCcccceeE
Q 002750 779 LPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAK-----------------------GFPRLEILQ 835 (885)
Q Consensus 779 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~-----------------------~~~~L~~L~ 835 (885)
+++|+.|+|++|.+++..+..+..+++|+.|+|++|.+.+.. ..... +.++|+.|+
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ 481 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI-NSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLD 481 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc-ChhhccCCCCcEEECcCceeeeecCcccccccceEEE
Confidence 255555555555554444444555555555555544444311 11111 235566666
Q ss_pred eecCCCcc-eEEcCCccccccceeeccccc-CCCCccc---cCCCCCCCCCCC
Q 002750 836 LLVDELEE-WQVEEGAMPRLRGLRIPEHLK-SRIPERL---RSIPPPAEGECE 883 (885)
Q Consensus 836 l~~~~l~~-l~~~~~~~~~L~~L~l~~c~~-~~lp~~l---~~L~~L~~~~c~ 883 (885)
++.|+++. ++.....+++|+.|++++|.+ ..+|..+ .+|+.|.+.+|.
T Consensus 482 ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred CcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 66555553 233345677888888888888 5666654 444455555543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=3.8e-21 Score=201.19 Aligned_cols=304 Identities=19% Similarity=0.208 Sum_probs=195.7
Q ss_pred CccceeEEeeccchhhhHHHhhhHHhHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCC-C
Q 002750 556 NLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNL-P 634 (885)
Q Consensus 556 ~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p 634 (885)
.+..++|.+.++.... .-..+|.++++|+.+.+.+|. +. .+|...+...||+.|+|.+|.|+++ .
T Consensus 77 p~~t~~LdlsnNkl~~------id~~~f~nl~nLq~v~l~~N~------Lt--~IP~f~~~sghl~~L~L~~N~I~sv~s 142 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSH------IDFEFFYNLPNLQEVNLNKNE------LT--RIPRFGHESGHLEKLDLRHNLISSVTS 142 (873)
T ss_pred ccceeeeecccccccc------CcHHHHhcCCcceeeeeccch------hh--hcccccccccceeEEeeeccccccccH
Confidence 4566777777765432 223567788888888888888 77 7777666667777777777777766 3
Q ss_pred ccccCCCCccEEecCCC-cccCCh-hhccccccccc--ccccccc------------------------ccccCccCCCc
Q 002750 635 PSIEKLQRLQTLDLSDT-LCGIPT-EISKLTELRHL--IGNFSGY------------------------LPIENLTNLRT 686 (885)
Q Consensus 635 ~~i~~L~~L~~L~Ls~~-~~~lp~-~i~~L~~L~~L--~~~~~~~------------------------~~~~~l~~L~~ 686 (885)
+++..+..|++||||.| +.++|. .+..-.++++| .++..+. .|+..+++|..
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 45666777777777764 333443 23333455555 1122222 23333444444
Q ss_pred cCcccccccccc-----CCcccCCCCeeEeecccccchhhccchhhhhccCCCceEEeeecCCccccccccCCCCCCcce
Q 002750 687 LKYVSVESWNRL-----SPDKLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSD 761 (885)
Q Consensus 687 L~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~ 761 (885)
|+.++++.+.+. .+.+|++|+.|.+..|.+....+ ..+..+.+++.|++..+..... -..++.++..|+.
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D----G~Fy~l~kme~l~L~~N~l~~v-n~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD----GAFYGLEKMEHLNLETNRLQAV-NEGWLFGLTSLEQ 297 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC----cceeeecccceeecccchhhhh-hcccccccchhhh
Confidence 444444433222 13344555555555544433222 3334555666666654432111 1245678889999
Q ss_pred EEEeee-cCCC--ChhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeec
Q 002750 762 LRLRGK-IEKL--PEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLV 838 (885)
Q Consensus 762 L~l~~~-~~~l--p~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~ 838 (885)
|+++.| +..+ ..|-+ .++|+.|+|++|.++..+...|..|..|+.|+|++|.++.. -.+.+.++.+|+.|+|+.
T Consensus 298 L~lS~NaI~rih~d~Wsf--tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l-~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSF--TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL-AEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred hccchhhhheeecchhhh--cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH-HhhHHHHhhhhhhhcCcC
Confidence 999988 5544 34443 69999999999999988889999999999999999988642 223456789999999999
Q ss_pred CCCcceEEc----CCccccccceeecccccCCCCc----cccCCCCCCCCC
Q 002750 839 DELEEWQVE----EGAMPRLRGLRIPEHLKSRIPE----RLRSIPPPAEGE 881 (885)
Q Consensus 839 ~~l~~l~~~----~~~~~~L~~L~l~~c~~~~lp~----~l~~L~~L~~~~ 881 (885)
|.|.....+ ...||+|++|.+.+|.++.+|. |++.|+.|++.+
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCC
Confidence 998754332 2358999999999999988875 566666665543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=4e-21 Score=202.06 Aligned_cols=282 Identities=19% Similarity=0.211 Sum_probs=171.3
Q ss_pred hHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCC--CCCccccCCCCccEEecCCC-cccCCh
Q 002750 581 WLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPID--NLPPSIEKLQRLQTLDLSDT-LCGIPT 657 (885)
Q Consensus 581 ~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~Ls~~-~~~lp~ 657 (885)
.-++.+.+|..|.+.+|. +. .+...+..|+.||.+.++.|+++ .+|..|-.|..|.+||||+| +.+.|.
T Consensus 49 eEL~~lqkLEHLs~~HN~------L~--~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~ 120 (1255)
T KOG0444|consen 49 EELSRLQKLEHLSMAHNQ------LI--SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT 120 (1255)
T ss_pred HHHHHHhhhhhhhhhhhh------hH--hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch
Confidence 334444444444444444 33 33334444444444444444443 34444444444444444442 333444
Q ss_pred hhccccccccc--cccccccccccCccCCCccCccccccccccCC----cccCCCCeeEeecccccchhhccchhhhhcc
Q 002750 658 EISKLTELRHL--IGNFSGYLPIENLTNLRTLKYVSVESWNRLSP----DKLINLRELHIEDKEWTREKVLFTFNSIAKL 731 (885)
Q Consensus 658 ~i~~L~~L~~L--~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l 731 (885)
.+..-+++-.| +++....+|-.-+.+|..|-.++++.+....+ ..+.+|+.|.+++|.+..... ..+..+
T Consensus 121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL----rQLPsm 196 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL----RQLPSM 196 (1255)
T ss_pred hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHH----hcCccc
Confidence 44444444433 11111122222234444455555555544432 356677788888886543222 455667
Q ss_pred CCCceEEeeecCCccccccccCCCCCCcceEEEeee-cCCCChhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCCceE
Q 002750 732 KSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK-IEKLPEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVILD 810 (885)
Q Consensus 732 ~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~lp~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 810 (885)
++|+.|.++.+......++.++..+.+|..++++.| +..+|..+.. +++|+.|+||+|+++... ...+...+|+.|+
T Consensus 197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~-l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYK-LRNLRRLNLSGNKITELN-MTEGEWENLETLN 274 (1255)
T ss_pred hhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhh-hhhhheeccCcCceeeee-ccHHHHhhhhhhc
Confidence 777777777665544557777788888888888876 7788888887 488888888888887433 3456677888888
Q ss_pred eeccccCCeEEeecCCCCcccceeEeecCCCc--ceEEcCCccccccceeecccccCCCCccccCCCCCC
Q 002750 811 LSYDSYSGKKLFCTAKGFPRLEILQLLVDELE--EWQVEEGAMPRLRGLRIPEHLKSRIPERLRSIPPPA 878 (885)
Q Consensus 811 L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~c~~~~lp~~l~~L~~L~ 878 (885)
|+.|.++. ++.....+++|+.|.++.|+|+ .+|...+.+..|+.+...+|.+.-+|+|+.++..|+
T Consensus 275 lSrNQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 275 LSRNQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQ 342 (1255)
T ss_pred cccchhcc--chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHH
Confidence 88888764 3333456788888888877765 677778888888888888888888888876655544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=3.2e-19 Score=179.00 Aligned_cols=130 Identities=25% Similarity=0.298 Sum_probs=65.7
Q ss_pred hccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCCCccccCCCCccEEecCC-CcccCChhhcc
Q 002750 583 FTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNLPPSIEKLQRLQTLDLSD-TLCGIPTEISK 661 (885)
Q Consensus 583 ~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~-~~~~lp~~i~~ 661 (885)
......|+.|+++++. +. ++|++|+.+..|..|+..+|+|..+|++++++.+|..|++.+ ++..+|+...+
T Consensus 110 i~s~~~l~~l~~s~n~------~~--el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~ 181 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNE------LK--ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA 181 (565)
T ss_pred Hhhhhhhhhhhccccc------ee--ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH
Confidence 3444555555555555 44 555555555555555555555555555555555555555554 34445554444
Q ss_pred ccccccccc--ccc--cccccc-------------------CccCCCccCccccccccccC-----CcccCCCCeeEeec
Q 002750 662 LTELRHLIG--NFS--GYLPIE-------------------NLTNLRTLKYVSVESWNRLS-----PDKLINLRELHIED 713 (885)
Q Consensus 662 L~~L~~L~~--~~~--~~~~~~-------------------~l~~L~~L~~~~~~~~~~~~-----l~~l~~L~~L~l~~ 713 (885)
++.|++|.. +.. .|..++ .+.+...|..++++.+.+.. ..++++|..|++..
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc
Confidence 555555521 111 111122 23333334444444433332 23667777777777
Q ss_pred ccccchh
Q 002750 714 KEWTREK 720 (885)
Q Consensus 714 ~~~~~~~ 720 (885)
|++.+..
T Consensus 262 Nklke~P 268 (565)
T KOG0472|consen 262 NKLKEVP 268 (565)
T ss_pred cccccCc
Confidence 7665543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.64 E-value=1.2e-15 Score=189.70 Aligned_cols=282 Identities=21% Similarity=0.193 Sum_probs=196.8
Q ss_pred CCccceeEEeeccchhhhHHHhhhHHhHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCC-CCCC
Q 002750 555 NNLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSP-IDNL 633 (885)
Q Consensus 555 ~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~-i~~l 633 (885)
...+++.|.+.++... ..| ..+..+++|++|+|+++.. +. .+| .++.+++|++|+|++|. +..+
T Consensus 609 ~~~~L~~L~L~~s~l~---~L~----~~~~~l~~Lk~L~Ls~~~~-----l~--~ip-~ls~l~~Le~L~L~~c~~L~~l 673 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE---KLW----DGVHSLTGLRNIDLRGSKN-----LK--EIP-DLSMATNLETLKLSDCSSLVEL 673 (1153)
T ss_pred CccCCcEEECcCcccc---ccc----cccccCCCCCEEECCCCCC-----cC--cCC-ccccCCcccEEEecCCCCcccc
Confidence 4566777766655432 222 3457899999999998864 55 677 48899999999999975 7799
Q ss_pred CccccCCCCccEEecCC--CcccCChhhcccccccccc-cccc--ccccccCccCCCccCccccccccccCCc---ccCC
Q 002750 634 PPSIEKLQRLQTLDLSD--TLCGIPTEISKLTELRHLI-GNFS--GYLPIENLTNLRTLKYVSVESWNRLSPD---KLIN 705 (885)
Q Consensus 634 p~~i~~L~~L~~L~Ls~--~~~~lp~~i~~L~~L~~L~-~~~~--~~~~~~~l~~L~~L~~~~~~~~~~~~l~---~l~~ 705 (885)
|..++++++|+.|++++ ++..+|..+ ++++|+.|. .+.. ...+ ...++|+. +++..+.+..+. .+++
T Consensus 674 p~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p-~~~~nL~~---L~L~~n~i~~lP~~~~l~~ 748 (1153)
T PLN03210 674 PSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP-DISTNISW---LDLDETAIEEFPSNLRLEN 748 (1153)
T ss_pred chhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc-cccCCcCe---eecCCCccccccccccccc
Confidence 99999999999999998 577789876 788888882 2211 1111 11234444 444444433332 4677
Q ss_pred CCeeEeecccccchh---hccchhhhhccCCCceEEeeecCCccccccccCCCCCCcceEEEeee--cCCCChhhhhcCC
Q 002750 706 LRELHIEDKEWTREK---VLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK--IEKLPEDIHVILP 780 (885)
Q Consensus 706 L~~L~l~~~~~~~~~---~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~lp~~~~~~l~ 780 (885)
|.+|.+.++...... ...........++|+.|+++.+.. ...++..+..+++|+.|++++| +..+|..+ . ++
T Consensus 749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~-l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-L~ 825 (1153)
T PLN03210 749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS-LVELPSSIQNLHKLEHLEIENCINLETLPTGI-N-LE 825 (1153)
T ss_pred cccccccccchhhccccccccchhhhhccccchheeCCCCCC-ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C-cc
Confidence 888887764321110 000001111235788888765432 2235667888999999999986 67888776 3 69
Q ss_pred CccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEee-cCCCcceEEcCCccccccceee
Q 002750 781 NLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLL-VDELEEWQVEEGAMPRLRGLRI 859 (885)
Q Consensus 781 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~-~~~l~~l~~~~~~~~~L~~L~l 859 (885)
+|+.|+|++|......+. ..++|+.|+|++|.+.. ++.....+++|+.|+++ |++++.++.....+++|+.|++
T Consensus 826 sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l 900 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF 900 (1153)
T ss_pred ccCEEECCCCCccccccc---cccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec
Confidence 999999999965443332 24689999999998864 34456679999999999 8999999888888999999999
Q ss_pred ccccc
Q 002750 860 PEHLK 864 (885)
Q Consensus 860 ~~c~~ 864 (885)
++|..
T Consensus 901 ~~C~~ 905 (1153)
T PLN03210 901 SDCGA 905 (1153)
T ss_pred CCCcc
Confidence 99987
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=1.3e-16 Score=176.76 Aligned_cols=300 Identities=22% Similarity=0.246 Sum_probs=153.2
Q ss_pred cceeEEeeccchhhhHHHhhhHHhHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCCCccc
Q 002750 558 LSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNLPPSI 637 (885)
Q Consensus 558 ~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i 637 (885)
++++|.+.++... .++..+..+..|+.|+++.|. +. .+|.++.++.+|+||+|.+|.+..+|.++
T Consensus 46 ~L~~l~lsnn~~~-------~fp~~it~l~~L~~ln~s~n~------i~--~vp~s~~~~~~l~~lnL~~n~l~~lP~~~ 110 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-------SFPIQITLLSHLRQLNLSRNY------IR--SVPSSCSNMRNLQYLNLKNNRLQSLPASI 110 (1081)
T ss_pred eeEEeeccccccc-------cCCchhhhHHHHhhcccchhh------Hh--hCchhhhhhhcchhheeccchhhcCchhH
Confidence 3556655555432 123344555666666666666 66 66666666666666666666666666666
Q ss_pred cCCCCccEEecCCC-cccCChhhccccccccc--cccccccccccCcc-CCCccCccccccccccCCcccCCCCeeEeec
Q 002750 638 EKLQRLQTLDLSDT-LCGIPTEISKLTELRHL--IGNFSGYLPIENLT-NLRTLKYVSVESWNRLSPDKLINLRELHIED 713 (885)
Q Consensus 638 ~~L~~L~~L~Ls~~-~~~lp~~i~~L~~L~~L--~~~~~~~~~~~~l~-~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 713 (885)
..+++|+.||+|+| ...+|..+..++.+..+ .++. .....+... ....|+...+......++..+++ .|++.+
T Consensus 111 ~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~-~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~ 187 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNE-KIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY 187 (1081)
T ss_pred HhhhcccccccchhccCCCchhHHhhhHHHHHhhhcch-hhhhhccccchhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence 66666666666663 44466666555554444 1110 000000000 00001111111111112222222 355555
Q ss_pred ccccchhhccchhhhhccCCCceEEeeecCCc-----------------cccccccCCCCCCcceEEEeee-cCCCChhh
Q 002750 714 KEWTREKVLFTFNSIAKLKSLQILSIKLSGER-----------------SFDLLQPLCDCPCLSDLRLRGK-IEKLPEDI 775 (885)
Q Consensus 714 ~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~-----------------~~~~~~~l~~~~~L~~L~l~~~-~~~lp~~~ 775 (885)
|.+.. ..+..+.+|+.+.+..+... .......-..+.+|++++++.+ +..+|.|+
T Consensus 188 N~~~~-------~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi 260 (1081)
T KOG0618|consen 188 NEMEV-------LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWI 260 (1081)
T ss_pred chhhh-------hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHH
Confidence 54431 11112222222221111000 0000111233457777777765 66777777
Q ss_pred hhcCCCccEEEEeccCCCC----------------------CChhHHhcCcCCCceEeeccccCCe--------------
Q 002750 776 HVILPNLECLSLEDSNLDD----------------------DPMPELEKMSNLVILDLSYDSYSGK-------------- 819 (885)
Q Consensus 776 ~~~l~~L~~L~L~~~~l~~----------------------~~~~~l~~l~~L~~L~L~~n~~~~~-------------- 819 (885)
.. +.+|+.|+..+|.++. ..++.+.++++|++|+|..|++...
T Consensus 261 ~~-~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 261 GA-CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNT 339 (1081)
T ss_pred Hh-cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHH
Confidence 76 3666666666555431 1223344456666666666654311
Q ss_pred ----------------------------------EEeecCCCCcccceeEeecCCCcceEEc-CCccccccceeeccccc
Q 002750 820 ----------------------------------KLFCTAKGFPRLEILQLLVDELEEWQVE-EGAMPRLRGLRIPEHLK 864 (885)
Q Consensus 820 ----------------------------------~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~c~~ 864 (885)
.......+|++||.|+|++|+|.++|.. ...++.|+.|+|++|.+
T Consensus 340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred HhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence 1111234588888888888888877643 34677888888888888
Q ss_pred CCCCccccCCCCCCCCCCC
Q 002750 865 SRIPERLRSIPPPAEGECE 883 (885)
Q Consensus 865 ~~lp~~l~~L~~L~~~~c~ 883 (885)
+.+|..+.++..|....|.
T Consensus 420 ~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 420 TTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred hhhhHHHHhhhhhHHHhhc
Confidence 8888776666666554443
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.55 E-value=2.5e-17 Score=165.51 Aligned_cols=80 Identities=31% Similarity=0.453 Sum_probs=67.5
Q ss_pred hHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCCCccccCCCCccEEecCC-CcccCChhh
Q 002750 581 WLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNLPPSIEKLQRLQTLDLSD-TLCGIPTEI 659 (885)
Q Consensus 581 ~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~-~~~~lp~~i 659 (885)
.-...+..|.||++++|. +. .+|++|+.+..+..|+.++|++.++|+.++++.+|..|+.++ +..++|.++
T Consensus 62 ~dl~nL~~l~vl~~~~n~------l~--~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i 133 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNK------LS--QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSI 133 (565)
T ss_pred HhhhcccceeEEEeccch------hh--hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchH
Confidence 446778888888888888 77 788888888888888888888888888888888888888887 577788888
Q ss_pred ccccccccc
Q 002750 660 SKLTELRHL 668 (885)
Q Consensus 660 ~~L~~L~~L 668 (885)
+.+-.|..|
T Consensus 134 ~~~~~l~dl 142 (565)
T KOG0472|consen 134 GRLLDLEDL 142 (565)
T ss_pred HHHhhhhhh
Confidence 888887777
No 14
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.51 E-value=1.7e-12 Score=160.86 Aligned_cols=297 Identities=16% Similarity=0.183 Sum_probs=183.6
Q ss_pred ccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecc-ccccHHHHHHHHHHH
Q 002750 180 EENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVS-QEYRTEDLLMRIINS 258 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~il~~ 258 (885)
...+|-|.. +.+.|... ...+++.|+|++|.||||++..+..+ ++.++|+++. .+.+...++..++..
T Consensus 13 ~~~~~~R~r----l~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 13 LHNTVVRER----LLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred ccccCcchH----HHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHH
Confidence 345666654 44444332 36789999999999999999999864 1258999996 445667777777777
Q ss_pred hcCCCCC----------ccccccHHHHHHHHHHHhc--CceEEEEEecCCCH--HH-HHHHHhhCCCCCCCcEEEEEecc
Q 002750 259 FNIDSPS----------NLEKMREEDLERCLYQSLQ--GYSYLVVIDDVWQK--ET-WESLKRAFPDSKNGSRVILTTRI 323 (885)
Q Consensus 259 l~~~~~~----------~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~--~~-~~~l~~~l~~~~~gs~iiiTtR~ 323 (885)
+....+. .....+...+...+...+. +.+++|||||+... .. .+.+...+.....+.++|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 7532110 0000122333333433432 67899999999642 22 33444444445667889999997
Q ss_pred hHHhhc--cCCCCceeecC----CCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCChHH
Q 002750 324 REVAER--SDERTHAYELP----FLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLSKKKPQE 397 (885)
Q Consensus 324 ~~v~~~--~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~ 397 (885)
..-... ........++. +|+.+|+.++|......... .+.+.+|.+.|+|+|+++..++..+......
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~-----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~- 235 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE-----AAESSRLCDDVEGWATALQLIALSARQNNSS- 235 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC-----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-
Confidence 421111 00112344555 99999999999876543322 4667899999999999999988777622210
Q ss_pred HHHHHHHHHHhhhc-Cchhhhhhh-hcccccChHhhhHHHhhhccCCCCCccChHHHHHHHHHcCcccCCCCCccHHHHH
Q 002750 398 WRIVRDHIWRHLRA-DSIQISHLL-DLSFNDLSYQLKLCFLYLGIFPEDADINIERLIRLIVAEGFIDQNEDDQVMEDVA 475 (885)
Q Consensus 398 w~~~~~~l~~~~~~-~~~~~~~~l-~~sy~~L~~~~k~c~~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~ 475 (885)
..... +.+.. +...+...+ .-.+..||++.+.++...|+++ .|+.+.+-.. . +. +.+
T Consensus 236 ~~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~--~~------~~~ 294 (903)
T PRK04841 236 LHDSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------T--GE------ENG 294 (903)
T ss_pred hhhhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------c--CC------CcH
Confidence 00001 11111 112233332 3347899999999999999986 3343322211 1 11 125
Q ss_pred HHHHHHHHHhcccccccccCcceeEEEEChhHHHHHHHHhh
Q 002750 476 KDILNELINRSLIQIGKISWGRIATCRVHDLLRDLAIQKAK 516 (885)
Q Consensus 476 ~~~l~~L~~~sll~~~~~~~~~~~~~~~H~lv~d~~~~~~~ 516 (885)
...+++|.+.+++....+.. ..+|++|+++++++.....
T Consensus 295 ~~~L~~l~~~~l~~~~~~~~--~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 295 QMRLEELERQGLFIQRMDDS--GEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred HHHHHHHHHCCCeeEeecCC--CCEEehhHHHHHHHHHHHH
Confidence 78899999999975432111 1478999999999988764
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=9.8e-14 Score=159.63 Aligned_cols=95 Identities=16% Similarity=0.042 Sum_probs=53.0
Q ss_pred CCcceEEEeee-cCCCChhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeE
Q 002750 757 PCLSDLRLRGK-IEKLPEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQ 835 (885)
Q Consensus 757 ~~L~~L~l~~~-~~~lp~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~ 835 (885)
++|+.|++++| +..+|.. +.+|+.|+|++|.++..+ . ..++|+.|++++|.+... +. .+.+|+.|+
T Consensus 362 ~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N~Lt~LP-~---l~s~L~~LdLS~N~LssI--P~---l~~~L~~L~ 428 (788)
T PRK15387 362 SELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLP-V---LPSELKELMVSGNRLTSL--PM---LPSGLLSLS 428 (788)
T ss_pred cccceehhhccccccCccc----ccccceEEecCCcccCCC-C---cccCCCEEEccCCcCCCC--Cc---chhhhhhhh
Confidence 34555555554 4444431 245666666666665322 1 124566666666665531 11 134566666
Q ss_pred eecCCCcceEEcCCccccccceeeccccc
Q 002750 836 LLVDELEEWQVEEGAMPRLRGLRIPEHLK 864 (885)
Q Consensus 836 l~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 864 (885)
++.|+++.+|.....+++|+.|+|++|++
T Consensus 429 Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 429 VYRNQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hccCcccccChHHhhccCCCeEECCCCCC
Confidence 66666666665555666777777777776
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.43 E-value=4.6e-15 Score=164.76 Aligned_cols=69 Identities=26% Similarity=0.423 Sum_probs=34.5
Q ss_pred hHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCCCccccCCCCccEEecCC-CcccCCh
Q 002750 581 WLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNLPPSIEKLQRLQTLDLSD-TLCGIPT 657 (885)
Q Consensus 581 ~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~-~~~~lp~ 657 (885)
.++..+.+|..|+..+|. +. .+|..+.....|++|++..|.+..+|+..+++++|++|||.. ++..+|.
T Consensus 258 ~wi~~~~nle~l~~n~N~------l~--~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~ 327 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNR------LV--ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPD 327 (1081)
T ss_pred HHHHhcccceEecccchh------HH--hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccch
Confidence 444455555555555555 44 455555555555555555555555555555555555555544 3444444
No 17
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.41 E-value=1.3e-11 Score=137.44 Aligned_cols=300 Identities=19% Similarity=0.239 Sum_probs=196.4
Q ss_pred ccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc-ccHHHHHHHHHHH
Q 002750 180 EENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE-YRTEDLLMRIINS 258 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~ 258 (885)
+.+.|-| .++++.|... ...+++.|..|+|.||||++..+... . ..-..+.|+++.+. .++..++..++..
T Consensus 18 ~~~~v~R----~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~~--~-~~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 18 PDNYVVR----PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWREL--A-ADGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred ccccccc----HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHHh--c-CcccceeEeecCCccCCHHHHHHHHHHH
Confidence 3445545 4556666544 36899999999999999999999752 1 12246899998754 5688889999998
Q ss_pred hcCCCCC----------ccccccHHHHHHHHHHHhc--CceEEEEEecCC---CHHHHHHHHhhCCCCCCCcEEEEEecc
Q 002750 259 FNIDSPS----------NLEKMREEDLERCLYQSLQ--GYSYLVVIDDVW---QKETWESLKRAFPDSKNGSRVILTTRI 323 (885)
Q Consensus 259 l~~~~~~----------~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~iiiTtR~ 323 (885)
++...+. .....+...+...+...+. .++..+||||.. ++.--..+...+...+.+-.+|+|||+
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 8854331 1112234445555555553 457999999975 444444455555566778999999997
Q ss_pred hHHhhcc--CCCCceeecC----CCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhc-CCChH
Q 002750 324 REVAERS--DERTHAYELP----FLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLS-KKKPQ 396 (885)
Q Consensus 324 ~~v~~~~--~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~-~~~~~ 396 (885)
..-.... .-....+++. .|+.+|+.++|.......-+ +.-.+.+.+..+|.+-|+..++-.++ +.+.+
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld-----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD-----AADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC-----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 7543322 1122334443 48999999999887533322 45688999999999999999998888 44433
Q ss_pred HHHHHHHHHHHhhhcCchhhhhhhhcccccChHhhhHHHhhhccCCCCCccChHHHHHHHHHcCcccCCCCCccHHHHHH
Q 002750 397 EWRIVRDHIWRHLRADSIQISHLLDLSFNDLSYQLKLCFLYLGIFPEDADINIERLIRLIVAEGFIDQNEDDQVMEDVAK 476 (885)
Q Consensus 397 ~w~~~~~~l~~~~~~~~~~~~~~l~~sy~~L~~~~k~c~~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~ 476 (885)
.-...+.-....+.+ ....-.++.||++++.+++.+|+++. +. +.|+..... ++-+.
T Consensus 245 q~~~~LsG~~~~l~d------YL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~Ltg-------------~~ng~ 301 (894)
T COG2909 245 QSLRGLSGAASHLSD------YLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNALTG-------------EENGQ 301 (894)
T ss_pred HHhhhccchHHHHHH------HHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHHhc-------------CCcHH
Confidence 222211111111111 12223478899999999999999864 12 233333211 22377
Q ss_pred HHHHHHHHhcccccccccCcceeEEEEChhHHHHHHHHhhh
Q 002750 477 DILNELINRSLIQIGKISWGRIATCRVHDLLRDLAIQKAKE 517 (885)
Q Consensus 477 ~~l~~L~~~sll~~~~~~~~~~~~~~~H~lv~d~~~~~~~~ 517 (885)
..+++|.+++|+-..-+ +...+|+.|+++.||.+..-+.
T Consensus 302 amLe~L~~~gLFl~~Ld--d~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 302 AMLEELERRGLFLQRLD--DEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHHHHhCCCceeeec--CCCceeehhHHHHHHHHhhhcc
Confidence 88999999998875442 2236899999999999877654
No 18
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.40 E-value=1.3e-10 Score=128.88 Aligned_cols=313 Identities=17% Similarity=0.130 Sum_probs=187.8
Q ss_pred ccccccccccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHH
Q 002750 178 AVEENVVGFEDDANKLLAHLLKE--DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRI 255 (885)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (885)
..++.++||+++++++...+... +.....+.|+|++|+|||++++.++++.......-..+++++....+...++..+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 35678999999999999998543 2345667899999999999999999873222222346778887777888899999
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHHHhc--CceEEEEEecCCCHH------HHHHHHhhCCCCC-CCcEEEEEecchHH
Q 002750 256 INSFNIDSPSNLEKMREEDLERCLYQSLQ--GYSYLVVIDDVWQKE------TWESLKRAFPDSK-NGSRVILTTRIREV 326 (885)
Q Consensus 256 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~------~~~~l~~~l~~~~-~gs~iiiTtR~~~v 326 (885)
+.++...... ....+.+++...+.+.+. +++.+||||+++... .+..+...+.... ....+|.++....+
T Consensus 107 ~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPP-SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 9998762211 122345666677777764 456899999997642 3444443333222 12335666665543
Q ss_pred hhccC------CCCceeecCCCChhhHHHHHHHHHhcCCC----CChhHHHHHHHHHHHcCCchHHHHHHHhhhc---C-
Q 002750 327 AERSD------ERTHAYELPFLRPDESWKLFCEKAFQSFN----ADEGLEKLGREMLEKCGGLPLAIVVLGGLLS---K- 392 (885)
Q Consensus 327 ~~~~~------~~~~~~~l~~L~~~e~~~lf~~~~~~~~~----~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~---~- 392 (885)
..... -....+.+.+++.++..+++..++..... +++.++.+++......|..+.|+.++-.... .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 33221 11356789999999999999987743211 1223333333333334557777766543221 1
Q ss_pred -C---ChHHHHHHHHHHHHhhhcCchhhhhhhhcccccChHhhhHHHhhhccCCC--CCccChHHHHHHH--HHcCcccC
Q 002750 393 -K---KPQEWRIVRDHIWRHLRADSIQISHLLDLSFNDLSYQLKLCFLYLGIFPE--DADINIERLIRLI--VAEGFIDQ 464 (885)
Q Consensus 393 -~---~~~~w~~~~~~l~~~~~~~~~~~~~~l~~sy~~L~~~~k~c~~~~~~fp~--~~~i~~~~li~~w--~a~g~i~~ 464 (885)
. +.+.+..+.+... .....-.+..||.+.|..+..++..-+ ...+....+.... +++.+- .
T Consensus 266 ~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~-~ 334 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG-Y 334 (394)
T ss_pred CCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC-C
Confidence 1 2234444444331 112334578999998888777664321 1345555555332 221111 1
Q ss_pred CCCCccHHHHHHHHHHHHHHhccccccc---ccCcceeEEEECh
Q 002750 465 NEDDQVMEDVAKDILNELINRSLIQIGK---ISWGRIATCRVHD 505 (885)
Q Consensus 465 ~~~~~~~~~~~~~~l~~L~~~sll~~~~---~~~~~~~~~~~H~ 505 (885)
. .........|+..|...|+|+... ...|+.+.++++.
T Consensus 335 ~---~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~ 375 (394)
T PRK00411 335 E---PRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSY 375 (394)
T ss_pred C---cCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecC
Confidence 1 111344677999999999998654 2345666666653
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=2.1e-12 Score=149.85 Aligned_cols=140 Identities=17% Similarity=0.187 Sum_probs=77.6
Q ss_pred CCCCeeEeecccccchhhccchhhhhccCCCceEEeeecCCccccccccCCCCCCcceEEEeee-cCCCChhhhhcCCCc
Q 002750 704 INLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK-IEKLPEDIHVILPNL 782 (885)
Q Consensus 704 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~lp~~~~~~l~~L 782 (885)
++|+.|++++|.+...... +. .+|+.|++..+.... ++.. .+++|+.|++++| +..+|..+ +++|
T Consensus 283 ~sL~~L~Ls~N~Lt~LP~~-----lp--~sL~~L~Ls~N~Lt~--LP~~--l~~sL~~L~Ls~N~Lt~LP~~l---~~sL 348 (754)
T PRK15370 283 EELRYLSVYDNSIRTLPAH-----LP--SGITHLNVQSNSLTA--LPET--LPPGLKTLEAGENALTSLPASL---PPEL 348 (754)
T ss_pred CCCcEEECCCCccccCccc-----ch--hhHHHHHhcCCcccc--CCcc--ccccceeccccCCccccCChhh---cCcc
Confidence 3677777777755432211 11 234444443332211 2211 1356777777776 55666544 3677
Q ss_pred cEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeecCCCcceEEcC----Ccccccccee
Q 002750 783 ECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVDELEEWQVEE----GAMPRLRGLR 858 (885)
Q Consensus 783 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~----~~~~~L~~L~ 858 (885)
+.|+|++|+++. .+..+ .++|+.|+|++|.++.. +. .-.++|+.|++++|+++.+|... ..+|++..|+
T Consensus 349 ~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~L--P~--~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 349 QVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNL--PE--NLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred cEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCC--CH--hHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEE
Confidence 777777777753 33333 35777777777776632 11 11235777777777777665432 2346677777
Q ss_pred eccccc
Q 002750 859 IPEHLK 864 (885)
Q Consensus 859 l~~c~~ 864 (885)
+.+|++
T Consensus 422 L~~Npl 427 (754)
T PRK15370 422 VEYNPF 427 (754)
T ss_pred eeCCCc
Confidence 777776
No 20
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=5.6e-10 Score=122.61 Aligned_cols=299 Identities=18% Similarity=0.200 Sum_probs=176.1
Q ss_pred cccccccccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCcccc-ccc---ceeEEEeccccccHHHHH
Q 002750 179 VEENVVGFEDDANKLLAHLLKE--DPRRSVISIFGMGGLGKTTLARKLYHHNDVK-HKF---ACCAWVSVSQEYRTEDLL 252 (885)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~~ 252 (885)
.++.++||++++++|..++... +.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 3467999999999999998642 2345678999999999999999999752110 110 246788888777788899
Q ss_pred HHHHHHhc---CCCCCccccccHHHHHHHHHHHh--cCceEEEEEecCCCH-----HHHHHHHhhC--CCC-CCCcEEEE
Q 002750 253 MRIINSFN---IDSPSNLEKMREEDLERCLYQSL--QGYSYLVVIDDVWQK-----ETWESLKRAF--PDS-KNGSRVIL 319 (885)
Q Consensus 253 ~~il~~l~---~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~-----~~~~~l~~~l--~~~-~~gs~iii 319 (885)
..++.++. ...+ ....+..+....+.+.+ .+++++||||+++.. +....+.... ... +....+|.
T Consensus 93 ~~i~~~l~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 93 VELANQLRGSGEEVP--TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHhhcCCCCC--CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 99999884 2222 11223445555566665 356789999999865 1223332221 111 12334455
Q ss_pred EecchHHhhcc------CCCCceeecCCCChhhHHHHHHHHHhcCCC---CChhHHHHHHHHHHHcCCchHHHHHHHh-h
Q 002750 320 TTRIREVAERS------DERTHAYELPFLRPDESWKLFCEKAFQSFN---ADEGLEKLGREMLEKCGGLPLAIVVLGG-L 389 (885)
Q Consensus 320 TtR~~~v~~~~------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~---~~~~~~~~~~~i~~~~~g~Plai~~~~~-~ 389 (885)
++......... .-....+.+.+.+.++..+++..++..... -.+...+.+.+++....|.|..+..+.. .
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55444322211 111356889999999999999988742111 1333334556677777888854432221 1
Q ss_pred h--c--C----CChHHHHHHHHHHHHhhhcCchhhhhhhhcccccChHhhhHHHhhhccCC--CCCccChHHHHHHHHHc
Q 002750 390 L--S--K----KKPQEWRIVRDHIWRHLRADSIQISHLLDLSFNDLSYQLKLCFLYLGIFP--EDADINIERLIRLIVAE 459 (885)
Q Consensus 390 l--~--~----~~~~~w~~~~~~l~~~~~~~~~~~~~~l~~sy~~L~~~~k~c~~~~~~fp--~~~~i~~~~li~~w~a~ 459 (885)
. . + -+.+....+.+.+. .....-++..||.+.+..+..++..- ++..+....+...+...
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 1 1 12223333333321 12223456788998887776655321 34456666666633211
Q ss_pred -CcccCCCCCccHHHHHHHHHHHHHHhccccccc
Q 002750 460 -GFIDQNEDDQVMEDVAKDILNELINRSLIQIGK 492 (885)
Q Consensus 460 -g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 492 (885)
..++. ..........++..|...|++....
T Consensus 321 ~~~~~~---~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CEDIGV---DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHhcCC---CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 11101 1122466888999999999998754
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=8.5e-14 Score=140.36 Aligned_cols=268 Identities=19% Similarity=0.129 Sum_probs=125.4
Q ss_pred hHHhHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecC-CCCCCCCc-cccCCCCccEEecCCC-ccc
Q 002750 578 DLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRN-SPIDNLPP-SIEKLQRLQTLDLSDT-LCG 654 (885)
Q Consensus 578 ~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~-~~i~~lp~-~i~~L~~L~~L~Ls~~-~~~ 654 (885)
.++..|+.+++||.|||++|. |+. .-|+.|..+..|-.|-+-+ |+|+.+|+ .|++|..||-|.+.-+ +..
T Consensus 82 iP~~aF~~l~~LRrLdLS~N~------Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C 154 (498)
T KOG4237|consen 82 IPPGAFKTLHRLRRLDLSKNN------ISF-IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC 154 (498)
T ss_pred CChhhccchhhhceecccccc------hhh-cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc
Confidence 455677777777777777777 651 2355677776666555444 77777775 3577777777776653 333
Q ss_pred CC-hhhccccccccc--cccccccccccCccCCCccCccccccccccCCcccCCCCeeEeecccccchhhccchhhhhcc
Q 002750 655 IP-TEISKLTELRHL--IGNFSGYLPIENLTNLRTLKYVSVESWNRLSPDKLINLRELHIEDKEWTREKVLFTFNSIAKL 731 (885)
Q Consensus 655 lp-~~i~~L~~L~~L--~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l 731 (885)
++ ..+..|++|+.| +.+.....+-+.+..+..++.+.+..+......+++.+..-... + . ..++..
T Consensus 155 ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~-~---------~-ietsga 223 (498)
T KOG4237|consen 155 IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM-N---------P-IETSGA 223 (498)
T ss_pred hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh-c---------h-hhcccc
Confidence 33 455666666666 22222222223344444444444333222222222211110000 0 0 000011
Q ss_pred CCCceEEeeecCCccccccccCCCCCCcce-EEEeee-cCCCChhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCCce
Q 002750 732 KSLQILSIKLSGERSFDLLQPLCDCPCLSD-LRLRGK-IEKLPEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVIL 809 (885)
Q Consensus 732 ~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~-L~l~~~-~~~lp~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 809 (885)
.......+.+......+.-........+.+ +....+ ....|...+..+++|++|+|++|+++..-..+|.++.+|+.|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 111000000000000000000000001100 000111 123344444445777777777777776666677777777777
Q ss_pred EeeccccCCeEEeecCCCCcccceeEeecCCCcceEE-cCCccccccceeeccccc
Q 002750 810 DLSYDSYSGKKLFCTAKGFPRLEILQLLVDELEEWQV-EEGAMPRLRGLRIPEHLK 864 (885)
Q Consensus 810 ~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~ 864 (885)
.|..|++.... ...+.++..|+.|+|..|+|+.+.+ ......+|.+|++-.||.
T Consensus 304 ~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 304 YLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hcCcchHHHHH-HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 77777665321 1224456677777777777765532 223344566666665544
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.26 E-value=2.6e-11 Score=139.94 Aligned_cols=247 Identities=19% Similarity=0.126 Sum_probs=170.6
Q ss_pred ceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCCCccccCCCCccEEecCCC-cccCChhhcccccc
Q 002750 587 SLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNLPPSIEKLQRLQTLDLSDT-LCGIPTEISKLTEL 665 (885)
Q Consensus 587 ~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~~-~~~lp~~i~~L~~L 665 (885)
..-.+|+|+++. ++ .+|..+. .+|+.|++++|+++.+|.. +++|++|++++| +..+|... ++|
T Consensus 201 ~~~~~LdLs~~~------Lt--sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp---~sL 264 (788)
T PRK15387 201 NGNAVLNVGESG------LT--TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLP---PGL 264 (788)
T ss_pred CCCcEEEcCCCC------CC--cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcc---ccc
Confidence 345689999998 88 8998775 4899999999999999963 588999999995 66788644 455
Q ss_pred ccc---cccccccccccCccCCCccCccccccccccCCc-ccCCCCeeEeecccccchhhccchhhhhccCCCceEEeee
Q 002750 666 RHL---IGNFSGYLPIENLTNLRTLKYVSVESWNRLSPD-KLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKL 741 (885)
Q Consensus 666 ~~L---~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~ 741 (885)
+.| .+.+. ..+ ..++ .|..+++..+.+..+. ..++|+.|++++|.+..... .+ .+|..|.+..
T Consensus 265 ~~L~Ls~N~L~-~Lp-~lp~---~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~-lp-------~~L~~L~Ls~ 331 (788)
T PRK15387 265 LELSIFSNPLT-HLP-ALPS---GLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA-LP-------SELCKLWAYN 331 (788)
T ss_pred ceeeccCCchh-hhh-hchh---hcCEEECcCCccccccccccccceeECCCCccccCCC-Cc-------cccccccccc
Confidence 555 22221 111 1122 3444555555554443 34689999999997765321 11 2355555543
Q ss_pred cCCccccccccCCCCCCcceEEEeee-cCCCChhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeE
Q 002750 742 SGERSFDLLQPLCDCPCLSDLRLRGK-IEKLPEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKK 820 (885)
Q Consensus 742 ~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~lp~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 820 (885)
+.... ++. .+.+|+.|+|++| +..+|.. +++|+.|++++|.+.. .+. ..++|+.|+|++|.+....
T Consensus 332 N~L~~--LP~---lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~LP 398 (788)
T PRK15387 332 NQLTS--LPT---LPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP 398 (788)
T ss_pred Ccccc--ccc---cccccceEecCCCccCCCCCC----Ccccceehhhcccccc-Ccc---cccccceEEecCCcccCCC
Confidence 33221 221 2358999999998 7777752 4789999999999874 332 2468999999999887522
Q ss_pred EeecCCCCcccceeEeecCCCcceEEcCCccccccceeecccccCCCCcccc---CCCCCCCCCCC
Q 002750 821 LFCTAKGFPRLEILQLLVDELEEWQVEEGAMPRLRGLRIPEHLKSRIPERLR---SIPPPAEGECE 883 (885)
Q Consensus 821 ~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~lp~~l~---~L~~L~~~~c~ 883 (885)
...++|+.|+++.|.|+.+|.. +.+|+.|++++|.++.+|..+. +|..|.+.++|
T Consensus 399 -----~l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 399 -----VLPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred -----CcccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 1246899999999999988742 4679999999999999998654 55556665554
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.25 E-value=1.2e-11 Score=143.56 Aligned_cols=234 Identities=20% Similarity=0.211 Sum_probs=130.7
Q ss_pred ccceeEEeeccchhhhHHHhhhHHhHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCCCcc
Q 002750 557 LLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNLPPS 636 (885)
Q Consensus 557 ~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~ 636 (885)
++++.|.+.++.... .+...+ .+|++|++++|. +. .+|..+. .+|+.|+|++|.+..+|..
T Consensus 199 ~~L~~L~Ls~N~Lts------LP~~l~---~nL~~L~Ls~N~------Lt--sLP~~l~--~~L~~L~Ls~N~L~~LP~~ 259 (754)
T PRK15370 199 EQITTLILDNNELKS------LPENLQ---GNIKTLYANSNQ------LT--SIPATLP--DTIQEMELSINRITELPER 259 (754)
T ss_pred cCCcEEEecCCCCCc------CChhhc---cCCCEEECCCCc------cc--cCChhhh--ccccEEECcCCccCcCChh
Confidence 467777777765442 122222 478888888887 77 6776553 4688888888888888776
Q ss_pred ccCCCCccEEecCCC-cccCChhhccccccccccccccccccccCccCCCccCccccccccccCCc--ccCCCCeeEeec
Q 002750 637 IEKLQRLQTLDLSDT-LCGIPTEISKLTELRHLIGNFSGYLPIENLTNLRTLKYVSVESWNRLSPD--KLINLRELHIED 713 (885)
Q Consensus 637 i~~L~~L~~L~Ls~~-~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~--~l~~L~~L~l~~ 713 (885)
+. .+|++|++++| +..+|..+. ++|++|. ++.|.+..+. -.++|+.|++++
T Consensus 260 l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~----------------------Ls~N~Lt~LP~~lp~sL~~L~Ls~ 313 (754)
T PRK15370 260 LP--SALQSLDLFHNKISCLPENLP--EELRYLS----------------------VYDNSIRTLPAHLPSGITHLNVQS 313 (754)
T ss_pred Hh--CCCCEEECcCCccCccccccC--CCCcEEE----------------------CCCCccccCcccchhhHHHHHhcC
Confidence 64 47888888874 555666443 3555551 1111111110 012455666666
Q ss_pred ccccchhhccchhhhhccCCCceEEeeecCCccccccccCCCCCCcceEEEeee-cCCCChhhhhcCCCccEEEEeccCC
Q 002750 714 KEWTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK-IEKLPEDIHVILPNLECLSLEDSNL 792 (885)
Q Consensus 714 ~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~lp~~~~~~l~~L~~L~L~~~~l 792 (885)
|.+..... .+ .++|+.|++..+.... ++..+ +++|+.|++++| +..+|..+ +++|+.|+|++|.+
T Consensus 314 N~Lt~LP~-----~l--~~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~L 379 (754)
T PRK15370 314 NSLTALPE-----TL--PPGLKTLEAGENALTS--LPASL--PPELQVLDVSKNQITVLPETL---PPTITTLDVSRNAL 379 (754)
T ss_pred CccccCCc-----cc--cccceeccccCCcccc--CChhh--cCcccEEECCCCCCCcCChhh---cCCcCEEECCCCcC
Confidence 65543211 11 1345555554433211 22222 257777777776 56666544 36778888888777
Q ss_pred CCCChhHHhcCcCCCceEeeccccCCeE--EeecCCCCcccceeEeecCCCcceEEcCCccccccce
Q 002750 793 DDDPMPELEKMSNLVILDLSYDSYSGKK--LFCTAKGFPRLEILQLLVDELEEWQVEEGAMPRLRGL 857 (885)
Q Consensus 793 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L 857 (885)
+.. |+.+. ++|+.|++++|.+.... ++.....++++..|++..|.+.. ..+++|+.|
T Consensus 380 t~L-P~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~-----~tl~~L~~L 438 (754)
T PRK15370 380 TNL-PENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE-----RTIQNMQRL 438 (754)
T ss_pred CCC-CHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH-----HHHHHHHHh
Confidence 643 33332 35777777777766421 11112345677777777776652 345555555
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=7.8e-10 Score=115.89 Aligned_cols=185 Identities=23% Similarity=0.210 Sum_probs=115.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQS 282 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~ 282 (885)
..+++.|+|++|+||||+++.+++..... .. ..+|+.. ...+..+++..++..++.+............+...+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~~-~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLVN-TRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeeeC-CCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 35689999999999999999999873321 11 2234332 345677888888888876432110000112222223232
Q ss_pred -hcCceEEEEEecCCCH--HHHHHHHhhCC---CCCCCcEEEEEecchHHhhcc--------CCCCceeecCCCChhhHH
Q 002750 283 -LQGYSYLVVIDDVWQK--ETWESLKRAFP---DSKNGSRVILTTRIREVAERS--------DERTHAYELPFLRPDESW 348 (885)
Q Consensus 283 -l~~~r~LlVlDdv~~~--~~~~~l~~~l~---~~~~gs~iiiTtR~~~v~~~~--------~~~~~~~~l~~L~~~e~~ 348 (885)
..+++.++|+||++.. ..++.+..... .......|++|.......... ......+.+++++.+|..
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 2678899999999864 45565543222 122334556666543211110 011346789999999999
Q ss_pred HHHHHHHhcCCC--CChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 002750 349 KLFCEKAFQSFN--ADEGLEKLGREMLEKCGGLPLAIVVLGGLL 390 (885)
Q Consensus 349 ~lf~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (885)
+++...+..... ...-..+..+.|++.++|.|..|+.++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987753321 122346789999999999999999988876
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=2e-12 Score=139.64 Aligned_cols=66 Identities=29% Similarity=0.219 Sum_probs=41.0
Q ss_pred HhHhccCceeEEEeccccccccccccccC---CCchhhcccccccEEEecCCCCCC-------CCccccCCCCccEEecC
Q 002750 580 RWLFTSFSLLRVYDAEVVNRFRTGIFSEF---PLPVEIGQLIHLKYLRLRNSPIDN-------LPPSIEKLQRLQTLDLS 649 (885)
Q Consensus 580 ~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~---~lp~~i~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~Ls 649 (885)
...|..+..|++|+++++. +.+. .++..+...+.|++|+++++.+.. ++..+.++.+|+.|+++
T Consensus 16 ~~~~~~l~~L~~l~l~~~~------l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 89 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNT------LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLS 89 (319)
T ss_pred HHHHHHHhhccEEeecCCC------CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEcc
Confidence 3556666667788887777 4211 345556666677777777766553 22345566677777776
Q ss_pred CC
Q 002750 650 DT 651 (885)
Q Consensus 650 ~~ 651 (885)
++
T Consensus 90 ~~ 91 (319)
T cd00116 90 DN 91 (319)
T ss_pred CC
Confidence 63
No 26
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.16 E-value=4.2e-10 Score=115.39 Aligned_cols=197 Identities=21% Similarity=0.192 Sum_probs=101.9
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHH---------
Q 002750 183 VVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLM--------- 253 (885)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~--------- 253 (885)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.. +..-..++|+...+.........
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhhhHHHHHHHHHHHHH
Confidence 799999999999988654 35789999999999999999999863 22112445555444332221111
Q ss_pred HHHHHhcCCCCC-c------cccccHHHHHHHHHHHh--cCceEEEEEecCCCHH--------HHHHHH---hhCCCCCC
Q 002750 254 RIINSFNIDSPS-N------LEKMREEDLERCLYQSL--QGYSYLVVIDDVWQKE--------TWESLK---RAFPDSKN 313 (885)
Q Consensus 254 ~il~~l~~~~~~-~------~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~--------~~~~l~---~~l~~~~~ 313 (885)
.+...+....+. . ............+.+.+ .+++++||+||+.... ....+. .......+
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 111112111110 0 00111222233333333 2345999999986433 122333 33223333
Q ss_pred CcEEEEEecchHHhhc-------cCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 002750 314 GSRVILTTRIREVAER-------SDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVV 385 (885)
Q Consensus 314 gs~iiiTtR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (885)
.+ +|+++....+... ..+....+.+++|+.+++++++...+... ..-+.-.+..++|+..+||+|..|..
T Consensus 157 ~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 44 4455444444332 11334459999999999999999976443 11112356679999999999998864
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.12 E-value=3e-12 Score=114.21 Aligned_cols=76 Identities=26% Similarity=0.415 Sum_probs=58.3
Q ss_pred cCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCCCccccCCCCccEEecCCC-cccCChhhcccc
Q 002750 585 SFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNLPPSIEKLQRLQTLDLSDT-LCGIPTEISKLT 663 (885)
Q Consensus 585 ~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~~-~~~lp~~i~~L~ 663 (885)
.+.++.-|.|++|. +. .+|+.|..+.+|+.|++++|+|+++|.+|+.+++|+.|+++-| +..+|.+++.++
T Consensus 31 ~~s~ITrLtLSHNK------l~--~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK------LT--VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred chhhhhhhhcccCc------ee--ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 45566677778887 77 7777888888888888888888888888888888888888764 555777777777
Q ss_pred ccccc
Q 002750 664 ELRHL 668 (885)
Q Consensus 664 ~L~~L 668 (885)
.|..|
T Consensus 103 ~levl 107 (264)
T KOG0617|consen 103 ALEVL 107 (264)
T ss_pred hhhhh
Confidence 77776
No 28
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.12 E-value=1.7e-12 Score=115.75 Aligned_cols=154 Identities=23% Similarity=0.221 Sum_probs=119.4
Q ss_pred ccCCCCCccceeEEeeccchhhhHHHhhhHHhHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCC
Q 002750 550 WSQDDNNLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSP 629 (885)
Q Consensus 550 ~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~ 629 (885)
.+....++++..|.++.+... ..+.-+..+.+|++|++.+|+ ++ ++|..|+.++.||.|++.-|+
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~-------~vppnia~l~nlevln~~nnq------ie--~lp~~issl~klr~lnvgmnr 90 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT-------VVPPNIAELKNLEVLNLSNNQ------IE--ELPTSISSLPKLRILNVGMNR 90 (264)
T ss_pred cccccchhhhhhhhcccCcee-------ecCCcHHHhhhhhhhhcccch------hh--hcChhhhhchhhhheecchhh
Confidence 344456677777777666443 234557889999999999999 99 999999999999999999999
Q ss_pred CCCCCccccCCCCccEEecCC-Ccc--cCChhhcccccccccc---ccc-cccccccCccCCCccCcccccc-ccccCCc
Q 002750 630 IDNLPPSIEKLQRLQTLDLSD-TLC--GIPTEISKLTELRHLI---GNF-SGYLPIENLTNLRTLKYVSVES-WNRLSPD 701 (885)
Q Consensus 630 i~~lp~~i~~L~~L~~L~Ls~-~~~--~lp~~i~~L~~L~~L~---~~~-~~~~~~~~l~~L~~L~~~~~~~-~~~~~l~ 701 (885)
+..+|..|+.++-|++|||++ |+. .+|..+..|+.|+.|+ +.+ ..|..++++++||.|..-+.+- ....+++
T Consensus 91 l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig 170 (264)
T KOG0617|consen 91 LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIG 170 (264)
T ss_pred hhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHH
Confidence 999999999999999999998 444 4999999999999883 344 3345578888887776544331 1233467
Q ss_pred ccCCCCeeEeecccccc
Q 002750 702 KLINLRELHIEDKEWTR 718 (885)
Q Consensus 702 ~l~~L~~L~l~~~~~~~ 718 (885)
.++.|++|+|.+|..+-
T Consensus 171 ~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHHHHhcccceeee
Confidence 88899999999887654
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.11 E-value=2.7e-09 Score=113.80 Aligned_cols=277 Identities=16% Similarity=0.136 Sum_probs=148.3
Q ss_pred cccccccccHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE---DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIIN 257 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 257 (885)
.+|||++..++++..++... ......+.++|++|+|||+||+.+.+.. ...+ ..+..+..... ..+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~-~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKP-GDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCc-hhHHHHHH
Confidence 46999999999998888632 2345668899999999999999999863 2222 12221111111 11222222
Q ss_pred HhcCCCC---CccccccHHHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHhhCCCCCCCcEEEEEecchHHhhccCCC-
Q 002750 258 SFNIDSP---SNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTTRIREVAERSDER- 333 (885)
Q Consensus 258 ~l~~~~~---~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~- 333 (885)
.+..... .+.+..+ ....+.+...+.+.+..+|+|+..+...|.. ...+.+-|..||+...+.......
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL------DLPPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee------cCCCeEEEEecCCccccCHHHHhhc
Confidence 2221110 0001111 1122334444444444555554433322211 112245555667654333221111
Q ss_pred CceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCChHHHHHHHHHHHHhhhc-C
Q 002750 334 THAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLSKKKPQEWRIVRDHIWRHLRA-D 412 (885)
Q Consensus 334 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~~~~~~-~ 412 (885)
...+.+++++.++..+++.+.+...... ..++....|++.|+|.|..+..++..+. ......-...... .
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a~~~~~~~it~~~ 221 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVR-------DFAQVRGQKIINRDI 221 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHHHHcCCCCcCHHH
Confidence 3467899999999999999887543222 2256778999999999977655554321 0000000000000 0
Q ss_pred chhhhhhhhcccccChHhhhHHHh-hhccCCCCCccChHHHHHHHHHcCcccCCCCCccHHHHHHHHHH-HHHHhccccc
Q 002750 413 SIQISHLLDLSFNDLSYQLKLCFL-YLGIFPEDADINIERLIRLIVAEGFIDQNEDDQVMEDVAKDILN-ELINRSLIQI 490 (885)
Q Consensus 413 ~~~~~~~l~~sy~~L~~~~k~c~~-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~-~L~~~sll~~ 490 (885)
.......+...|..++++.+..+. ....+..+ .+..+.+.... |-- ...++..++ .|++++|++.
T Consensus 222 v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~~---------~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 222 ALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GED---------ADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CCC---------cchHHHhhhHHHHHcCCccc
Confidence 111222256678899998887776 44666543 45554444433 211 234777788 6999999974
Q ss_pred cc
Q 002750 491 GK 492 (885)
Q Consensus 491 ~~ 492 (885)
..
T Consensus 289 ~~ 290 (305)
T TIGR00635 289 TP 290 (305)
T ss_pred CC
Confidence 43
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.07 E-value=2.8e-09 Score=114.40 Aligned_cols=278 Identities=17% Similarity=0.153 Sum_probs=147.5
Q ss_pred ccccccccccHHHHHHHHhc---CCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHH
Q 002750 180 EENVVGFEDDANKLLAHLLK---EDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRII 256 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 256 (885)
-++|+|++..++.+..++.. .....+.+.|+|++|+||||+|+.+++.. ...+ .++.... ......+..++
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEeccc-ccChHHHHHHH
Confidence 36799999999998887753 23346678899999999999999999873 2222 1222111 11111222222
Q ss_pred HHhcCCCC---CccccccHHHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHhhCCCCCCCcEEEEEecchHHhhccCCC
Q 002750 257 NSFNIDSP---SNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTTRIREVAERSDER 333 (885)
Q Consensus 257 ~~l~~~~~---~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~ 333 (885)
..+..... ...+... ....+.+...+.+.+..+|+|+..+...+. . ...+.+-|..|++...+.......
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~---~l~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---L---DLPPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---e---cCCCceEEeecCCcccCCHHHHHh
Confidence 22211100 0000000 011112222333333333333332211100 0 011234455566644333221111
Q ss_pred -CceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCChHHHHHHHHHHHHhhh-c
Q 002750 334 -THAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLSKKKPQEWRIVRDHIWRHLR-A 411 (885)
Q Consensus 334 -~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~~~~~-~ 411 (885)
...+++++++.++..+++.+.+...... .-++.+..|++.|+|.|-.+..+...+. .|..... ..... .
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~--~~~I~~~ 241 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG--DGVITKE 241 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC--CCCCCHH
Confidence 3568999999999999999887554322 2356789999999999976655554332 1111100 00000 0
Q ss_pred CchhhhhhhhcccccChHhhhHHHh-hhccCCCCCccChHHHHHHHHHcCcccCCCCCccHHHHHHHHHH-HHHHhcccc
Q 002750 412 DSIQISHLLDLSFNDLSYQLKLCFL-YLGIFPEDADINIERLIRLIVAEGFIDQNEDDQVMEDVAKDILN-ELINRSLIQ 489 (885)
Q Consensus 412 ~~~~~~~~l~~sy~~L~~~~k~c~~-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~-~L~~~sll~ 489 (885)
........+...+..|++..+..+. ....|+.+ .+..+.+.... | .+ .+.+++.++ .|++.+|++
T Consensus 242 ~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---~~------~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 242 IADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---EE------RDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred HHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---CC------cchHHHHhhHHHHHcCCcc
Confidence 0112334456778889888888775 66667655 46665554433 1 11 223566666 899999997
Q ss_pred ccc
Q 002750 490 IGK 492 (885)
Q Consensus 490 ~~~ 492 (885)
...
T Consensus 309 ~~~ 311 (328)
T PRK00080 309 RTP 311 (328)
T ss_pred cCC
Confidence 543
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=1.4e-11 Score=132.92 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=9.8
Q ss_pred hhcccccccEEEecCCCCC
Q 002750 613 EIGQLIHLKYLRLRNSPID 631 (885)
Q Consensus 613 ~i~~l~~Lr~L~L~~~~i~ 631 (885)
.+.++++|++|++++|.+.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 76 GLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHhcCceeEEEccCCCCC
Confidence 3444555555555555544
No 32
>PF05729 NACHT: NACHT domain
Probab=99.01 E-value=1.2e-09 Score=105.32 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=88.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccc----cceeEEEeccccccHH---HHHHHHHHHhcCCCCCccccccHHHHHH
Q 002750 205 SVISIFGMGGLGKTTLARKLYHHNDVKHK----FACCAWVSVSQEYRTE---DLLMRIINSFNIDSPSNLEKMREEDLER 277 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~~~ 277 (885)
|++.|+|.+|+||||+++.++.+...... +...+|+......... .+...+..+...... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA------PIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh------hhHH---
Confidence 58999999999999999999876322222 4566777766544332 233333333322111 1111
Q ss_pred HHHHH-hcCceEEEEEecCCCHH---------HHHHHH-hhCCC-CCCCcEEEEEecchHHhhcc--CCCCceeecCCCC
Q 002750 278 CLYQS-LQGYSYLVVIDDVWQKE---------TWESLK-RAFPD-SKNGSRVILTTRIREVAERS--DERTHAYELPFLR 343 (885)
Q Consensus 278 ~l~~~-l~~~r~LlVlDdv~~~~---------~~~~l~-~~l~~-~~~gs~iiiTtR~~~v~~~~--~~~~~~~~l~~L~ 343 (885)
.+... .+.++++||+|++++.. .+..+. ..+.. ..+++++|||+|........ ......+++.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 12222 25789999999997532 133333 33333 35689999999987763321 2334679999999
Q ss_pred hhhHHHHHHHHH
Q 002750 344 PDESWKLFCEKA 355 (885)
Q Consensus 344 ~~e~~~lf~~~~ 355 (885)
+++..+++.+..
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999997764
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.1e-11 Score=121.34 Aligned_cols=109 Identities=27% Similarity=0.368 Sum_probs=68.8
Q ss_pred CCCCCCcceEEEeee-c---CCCChhhhhcCCCccEEEEeccCCCC-CChhHHhcCcCCCceEeeccccCCeEEeec---
Q 002750 753 LCDCPCLSDLRLRGK-I---EKLPEDIHVILPNLECLSLEDSNLDD-DPMPELEKMSNLVILDLSYDSYSGKKLFCT--- 824 (885)
Q Consensus 753 l~~~~~L~~L~l~~~-~---~~lp~~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~--- 824 (885)
+..+|+|+.|+|.+| . ...+..+ +..|+.|+|++|.+-. +.....+.+|.|..|+++.+.+.....+..
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~~~~~~i---~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIKATSTKI---LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred HHhCCcHHHhhhhcccccceecchhhh---hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccch
Confidence 344556666666555 1 1233333 3667888888876643 234566778888888887776654332221
Q ss_pred --CCCCcccceeEeecCCCcceEEc--CCccccccceeeccccc
Q 002750 825 --AKGFPRLEILQLLVDELEEWQVE--EGAMPRLRGLRIPEHLK 864 (885)
Q Consensus 825 --~~~~~~L~~L~l~~~~l~~l~~~--~~~~~~L~~L~l~~c~~ 864 (885)
...||+|++|++..|++..|+.- ...+++|+.|.+..|++
T Consensus 295 ~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 35688888888888888777642 23567788888777777
No 34
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.95 E-value=9.3e-08 Score=108.08 Aligned_cols=296 Identities=15% Similarity=0.165 Sum_probs=165.7
Q ss_pred cccccccccccHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHhcCccc---ccccc--eeEEEeccccccHHH
Q 002750 179 VEENVVGFEDDANKLLAHLLKE---DPRRSVISIFGMGGLGKTTLARKLYHHNDV---KHKFA--CCAWVSVSQEYRTED 250 (885)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~~~~~~~ 250 (885)
.++.+.|||+++++|...|... .....++.|+|++|.|||++++.|.+.... ..... .+++|++....+...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 4578999999999999988642 333467889999999999999999865211 11111 367888877778888
Q ss_pred HHHHHHHHhcCCCCCccccccHHHHHHHHHHHhc---CceEEEEEecCCCH-----HHHHHHHhhCCCCCCCcEEEE--E
Q 002750 251 LLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQ---GYSYLVVIDDVWQK-----ETWESLKRAFPDSKNGSRVIL--T 320 (885)
Q Consensus 251 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~~r~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iii--T 320 (885)
++..|..++....+. ......+....+...+. ....+||||+++.. +.+-.+..... ..+++|+| +
T Consensus 833 IYqvI~qqL~g~~P~--~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIGI 908 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPP--NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIAI 908 (1164)
T ss_pred HHHHHHHHHcCCCCC--ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEEe
Confidence 888888888543331 22233444555555542 22358999999743 12222222211 23445443 3
Q ss_pred ecchHHhhc----cC--CCCceeecCCCChhhHHHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCchHHHHHHHhhhc-
Q 002750 321 TRIREVAER----SD--ERTHAYELPFLRPDESWKLFCEKAFQSFN--ADEGLEKLGREMLEKCGGLPLAIVVLGGLLS- 391 (885)
Q Consensus 321 tR~~~v~~~----~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~- 391 (885)
+...+.... +. .....+...|.+.++..+++..++..... .+..++-+|+.++...|-.=.||.++-.+..
T Consensus 909 SNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 909 SNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred cCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh
Confidence 432222111 11 11234677999999999999998864321 1334444444444444445556665554443
Q ss_pred CCC----hHHHHHHHHHHHHhhhcCchhhhhhhhcccccChHhhhHHHhhhccCCC---CCccChHHHHHHHH--Hc--C
Q 002750 392 KKK----PQEWRIVRDHIWRHLRADSIQISHLLDLSFNDLSYQLKLCFLYLGIFPE---DADINIERLIRLIV--AE--G 460 (885)
Q Consensus 392 ~~~----~~~w~~~~~~l~~~~~~~~~~~~~~l~~sy~~L~~~~k~c~~~~~~fp~---~~~i~~~~li~~w~--a~--g 460 (885)
... .+....+...+ . ...+.-....||.|.|-.+..+...-+ ...++...+..... ++ |
T Consensus 989 kegskVT~eHVrkAleei----E------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~G 1058 (1164)
T PTZ00112 989 KRGQKIVPRDITEATNQL----F------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSG 1058 (1164)
T ss_pred cCCCccCHHHHHHHHHHH----H------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhh
Confidence 111 11222222111 1 112233456789988876665443222 22456555544332 22 1
Q ss_pred -cccCCCCCccHHHHHHHHHHHHHHhccccccc
Q 002750 461 -FIDQNEDDQVMEDVAKDILNELINRSLIQIGK 492 (885)
Q Consensus 461 -~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 492 (885)
.++. ....+ ....++.+|...|+|....
T Consensus 1059 k~iGv---~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1059 KYIGM---CSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred hhcCC---CCcHH-HHHHHHHHHHhcCeEEecC
Confidence 1111 11123 6778888999988887644
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=5.4e-10 Score=132.13 Aligned_cols=299 Identities=22% Similarity=0.184 Sum_probs=179.2
Q ss_pred ccCCCCCccceeEEeeccchhhhHHHhhhHHhHhccCceeEEEeccccccccccccccCCCchh-hcccccccEEEecCC
Q 002750 550 WSQDDNNLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVE-IGQLIHLKYLRLRNS 628 (885)
Q Consensus 550 ~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~-i~~l~~Lr~L~L~~~ 628 (885)
.+.......+|...+.++.... . ..-...+.|++|-+..+.. .+. .++.. |..+++||+|||++|
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~-------~-~~~~~~~~L~tLll~~n~~----~l~--~is~~ff~~m~~LrVLDLs~~ 581 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEH-------I-AGSSENPKLRTLLLQRNSD----WLL--EISGEFFRSLPLLRVLDLSGN 581 (889)
T ss_pred cccccchhheeEEEEeccchhh-------c-cCCCCCCccceEEEeecch----hhh--hcCHHHHhhCcceEEEECCCC
Confidence 3444555677777777664421 1 1123444788888888751 023 44444 778999999999976
Q ss_pred C-CCCCCccccCCCCccEEecCC-CcccCChhhccccccccccccccc----ccc-ccCccCCCccCccccc-c---ccc
Q 002750 629 P-IDNLPPSIEKLQRLQTLDLSD-TLCGIPTEISKLTELRHLIGNFSG----YLP-IENLTNLRTLKYVSVE-S---WNR 697 (885)
Q Consensus 629 ~-i~~lp~~i~~L~~L~~L~Ls~-~~~~lp~~i~~L~~L~~L~~~~~~----~~~-~~~l~~L~~L~~~~~~-~---~~~ 697 (885)
. +.+||.+|++|-+|++|++++ .+..+|..+.+|++|.+|+..... ... ...+++|+.|...... . ...
T Consensus 582 ~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l 661 (889)
T KOG4658|consen 582 SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLL 661 (889)
T ss_pred CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhH
Confidence 5 789999999999999999999 688899999999999999443221 112 2336667766655443 1 122
Q ss_pred cCCcccCCCCeeEeecccccchhhccchhhhhccCCCceEEeeec--CCccccccccCCCCCCcceEEEeee-cCCCC-h
Q 002750 698 LSPDKLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLS--GERSFDLLQPLCDCPCLSDLRLRGK-IEKLP-E 773 (885)
Q Consensus 698 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~--~~~~~~~~~~l~~~~~L~~L~l~~~-~~~lp-~ 773 (885)
.++.++.+|+.|.+..... ... ..+..+..|..+..... ..........+..+.+|+.|.+.++ ..... .
T Consensus 662 ~el~~Le~L~~ls~~~~s~-~~~-----e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 662 KELENLEHLENLSITISSV-LLL-----EDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred Hhhhcccchhhheeecchh-HhH-----hhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcc
Confidence 3345566666666544322 111 12222233322221111 1111123445677888999988876 22111 1
Q ss_pred hh----hh-cCCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEee---------cCCCCccccee-Eee-
Q 002750 774 DI----HV-ILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFC---------TAKGFPRLEIL-QLL- 837 (885)
Q Consensus 774 ~~----~~-~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~---------~~~~~~~L~~L-~l~- 837 (885)
|. .. .++++..+.+.+|... ..+.+..-.|+|+.|.+..+......++. ....|.++..+ .+.
T Consensus 736 ~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~ 814 (889)
T KOG4658|consen 736 WEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCS 814 (889)
T ss_pred cccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeec
Confidence 21 11 1356666777777543 33455667899999999877654322211 01245566666 344
Q ss_pred cCCCcceEEcCCccccccceeeccccc-CCCCc
Q 002750 838 VDELEEWQVEEGAMPRLRGLRIPEHLK-SRIPE 869 (885)
Q Consensus 838 ~~~l~~l~~~~~~~~~L~~L~l~~c~~-~~lp~ 869 (885)
...+..+....-.++.|+.+.+..||. ..+|.
T Consensus 815 l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 815 LGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred CCCCceeEecccCccchhheehhcCcccccCcc
Confidence 566666666666778899999999988 66765
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.91 E-value=1.4e-10 Score=117.55 Aligned_cols=262 Identities=20% Similarity=0.200 Sum_probs=137.3
Q ss_pred eeEEEeccccccccccccccCCCchh-hcccccccEEEecCCCCCCC-CccccCCCCccEEecCC--CcccCCh-hhccc
Q 002750 588 LLRVYDAEVVNRFRTGIFSEFPLPVE-IGQLIHLKYLRLRNSPIDNL-PPSIEKLQRLQTLDLSD--TLCGIPT-EISKL 662 (885)
Q Consensus 588 ~Lr~L~L~~~~~~~~~~l~~~~lp~~-i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~Ls~--~~~~lp~-~i~~L 662 (885)
.-..+.|..|. |+ .||+. |+.+++||.||||+|.|+.| |..|.+|.+|.+|-+.+ .+..+|+ .+.+|
T Consensus 68 ~tveirLdqN~------I~--~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 68 ETVEIRLDQNQ------IS--SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cceEEEeccCC------cc--cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 44567777777 77 77764 77888888888888888877 77788888777776554 3666776 45677
Q ss_pred cccccccccc--cccccccCccCCCccCcccccccccc-----CCcccCCCCeeEeecccccchhhccchhhhhccCCCc
Q 002750 663 TELRHLIGNF--SGYLPIENLTNLRTLKYVSVESWNRL-----SPDKLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQ 735 (885)
Q Consensus 663 ~~L~~L~~~~--~~~~~~~~l~~L~~L~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~ 735 (885)
..|+.|..+- ........+..|+.|..+.+-.+.+. .+..+..++.+.+..|.... .-+++.+.
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic---------dCnL~wla 210 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC---------DCNLPWLA 210 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc---------ccccchhh
Confidence 7777662211 11111112222222222222111111 12333334444333332100 00111110
Q ss_pred eEEeeecCCccccccccCCCCCCcceEEEeee-cCCCChhhhhcCCCccEE---EEecc-CCCCCChhHHhcCcCCCceE
Q 002750 736 ILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK-IEKLPEDIHVILPNLECL---SLEDS-NLDDDPMPELEKMSNLVILD 810 (885)
Q Consensus 736 ~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~lp~~~~~~l~~L~~L---~L~~~-~l~~~~~~~l~~l~~L~~L~ 810 (885)
.-. ...+..++.........+... +..++..-+ ..+++.+ -.+.| .....+...|.+||+|+.|+
T Consensus 211 ~~~--------a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf--~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 211 DDL--------AMNPIETSGARCVSPYRLYYKRINQEDARKF--LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred hHH--------hhchhhcccceecchHHHHHHHhcccchhhh--hhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence 000 000000111111111111111 122221111 1222222 22334 33334456789999999999
Q ss_pred eeccccCCeEEeecCCCCcccceeEeecCCCcceEE-cCCccccccceeecccccCCC-CccccCCCCC
Q 002750 811 LSYDSYSGKKLFCTAKGFPRLEILQLLVDELEEWQV-EEGAMPRLRGLRIPEHLKSRI-PERLRSIPPP 877 (885)
Q Consensus 811 L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~l-p~~l~~L~~L 877 (885)
|++|+++... ...+.+...++.|.|..|+|+.+.. ....+..|+.|+|.+|.++.+ |..+..+.+|
T Consensus 281 lsnN~i~~i~-~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 281 LSNNKITRIE-DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred cCCCccchhh-hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 9999998744 2345678899999999999987643 234578899999999999554 4445544443
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.86 E-value=5.5e-08 Score=115.81 Aligned_cols=311 Identities=15% Similarity=0.163 Sum_probs=178.2
Q ss_pred cccccccHHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEE---eccccc---cHHHHHHHH
Q 002750 183 VVGFEDDANKLLAHLLKE-DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWV---SVSQEY---RTEDLLMRI 255 (885)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv---~~~~~~---~~~~~~~~i 255 (885)
++||+.+++.+...+... .+...++.|.|.+|||||+++++|... +.+.+...+-- ...... .....++++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 789999999999998654 446789999999999999999999876 22221111111 111111 122334444
Q ss_pred HHHhcCCCC------------------------------------Cc--cccccHH-----HHHHHHHHHh-cCceEEEE
Q 002750 256 INSFNIDSP------------------------------------SN--LEKMREE-----DLERCLYQSL-QGYSYLVV 291 (885)
Q Consensus 256 l~~l~~~~~------------------------------------~~--~~~~~~~-----~~~~~l~~~l-~~~r~LlV 291 (885)
+.++..... .. ....... .....+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 444311100 00 0000001 1222233333 45699999
Q ss_pred EecC-CCH-HHHH---HHHhhCC--C-CCCCcEEEEEecch-HHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCC
Q 002750 292 IDDV-WQK-ETWE---SLKRAFP--D-SKNGSRVILTTRIR-EVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNAD 362 (885)
Q Consensus 292 lDdv-~~~-~~~~---~l~~~l~--~-~~~gs~iiiTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~ 362 (885)
+||+ |-+ ...+ .+..... . ..+..-.+.|.+.. ............+.|.||+..+.-.+..........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~-- 237 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL-- 237 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc--
Confidence 9999 633 3322 2222222 0 00111123333332 122222345678999999999999999988754322
Q ss_pred hhHHHHHHHHHHHcCCchHHHHHHHhhhcCC-------ChHHHHHHHHHHHHhhhcCchhhhhhhhcccccChHhhhHHH
Q 002750 363 EGLEKLGREMLEKCGGLPLAIVVLGGLLSKK-------KPQEWRIVRDHIWRHLRADSIQISHLLDLSFNDLSYQLKLCF 435 (885)
Q Consensus 363 ~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-------~~~~w~~~~~~l~~~~~~~~~~~~~~l~~sy~~L~~~~k~c~ 435 (885)
...+....|+++..|+|+.+..+...+... +...|..-..++... ...+.+...+..-.+.||...+..+
T Consensus 238 -~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~--~~~~~vv~~l~~rl~kL~~~t~~Vl 314 (849)
T COG3899 238 -LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL--ATTDAVVEFLAARLQKLPGTTREVL 314 (849)
T ss_pred -ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc--hhhHHHHHHHHHHHhcCCHHHHHHH
Confidence 235778999999999999999998888733 122443322221110 1122255567888999999999999
Q ss_pred hhhccCCCCCccChHHHHHHHHHcCcccCCCCCccHHHHHHHHHHHHHHhccccccc-ccC---ccee-EEEEChhHHHH
Q 002750 436 LYLGIFPEDADINIERLIRLIVAEGFIDQNEDDQVMEDVAKDILNELINRSLIQIGK-ISW---GRIA-TCRVHDLLRDL 510 (885)
Q Consensus 436 ~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~-~~~---~~~~-~~~~H~lv~d~ 510 (885)
...|++.. .|+.+.|...|-. ...+++...++.|....++-..+ ... .... +--.|+.+++.
T Consensus 315 ~~AA~iG~--~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqa 381 (849)
T COG3899 315 KAAACIGN--RFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQA 381 (849)
T ss_pred HHHHHhCc--cCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHH
Confidence 99999854 5677777776632 23455666666666655554322 111 1111 11468888877
Q ss_pred HHH
Q 002750 511 AIQ 513 (885)
Q Consensus 511 ~~~ 513 (885)
+-.
T Consensus 382 aY~ 384 (849)
T COG3899 382 AYN 384 (849)
T ss_pred Hhc
Confidence 743
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=2.2e-09 Score=104.81 Aligned_cols=135 Identities=25% Similarity=0.281 Sum_probs=100.1
Q ss_pred CcccCCCCeeEeecccccchhhccchhhhhccCCCceEEeeecCCccccccccCCCCCCcceEEEeee-cCCCChhhhhc
Q 002750 700 PDKLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK-IEKLPEDIHVI 778 (885)
Q Consensus 700 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~lp~~~~~~ 778 (885)
...+..|..|++++|.+.... ++..-++.++.|+++.++.... ..+..+++|..|+|++| +..+..|-..
T Consensus 280 ~dTWq~LtelDLS~N~I~~iD-----ESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls~~~Gwh~K- 350 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQID-----ESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLAECVGWHLK- 350 (490)
T ss_pred cchHhhhhhccccccchhhhh-----hhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhHhhhhhHhh-
Confidence 456778888999998765443 4445567888888887654322 33667788899999988 5667767666
Q ss_pred CCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeecCCCcceE
Q 002750 779 LPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVDELEEWQ 845 (885)
Q Consensus 779 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~ 845 (885)
+.|++.|.|+.|.+. .+..+++|-+|..|++++|++...+-....+.+|+|+.|.|.+|.+..++
T Consensus 351 LGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 589999999999874 45678888889999998888876554555677888888888878777654
No 39
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.78 E-value=2.4e-08 Score=103.61 Aligned_cols=291 Identities=20% Similarity=0.234 Sum_probs=191.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccccc-ceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKF-ACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 281 (885)
..+.+.++|.|||||||++-.+.. +...| +.+.++.+....+...+.-.....++.... +-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~------~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ------PGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc------cchHHHHHHHH
Confidence 468999999999999999998886 34566 456677777777777777777777776433 22334445667
Q ss_pred HhcCceEEEEEecCCCH-HHHHHHHhhCCCCCCCcEEEEEecchHHhhccCCCCceeecCCCChh-hHHHHHHHHHhcCC
Q 002750 282 SLQGYSYLVVIDDVWQK-ETWESLKRAFPDSKNGSRVILTTRIREVAERSDERTHAYELPFLRPD-ESWKLFCEKAFQSF 359 (885)
Q Consensus 282 ~l~~~r~LlVlDdv~~~-~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~~ 359 (885)
...++|.++|+||..+. +.-..+...+..+...-.|+.|+|...... ...+..+++|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~----ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA----GEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc----ccccccCCccccCCchhHHHHHHHHHhc
Confidence 77899999999998664 233334444444555666888888654432 3456778888776 68888877664433
Q ss_pred CC---ChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCChHHHHHHHHHHHHhhhcC-------chhhhhhhhcccccChH
Q 002750 360 NA---DEGLEKLGREMLEKCGGLPLAIVVLGGLLSKKKPQEWRIVRDHIWRHLRAD-------SIQISHLLDLSFNDLSY 429 (885)
Q Consensus 360 ~~---~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~-------~~~~~~~l~~sy~~L~~ 429 (885)
.. ...-...+.+|.++.+|.|++|...++..+.....+-...++.-...+.+. .......+.+||.-|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 22 223357789999999999999999999888544433333232222222211 45678899999999999
Q ss_pred hhhHHHhhhccCCCCCccChHHHHHHHHHcCcccCCCCCccHHHHHHHHHHHHHHhcccccccccCcceeEEEEChhHHH
Q 002750 430 QLKLCFLYLGIFPEDADINIERLIRLIVAEGFIDQNEDDQVMEDVAKDILNELINRSLIQIGKISWGRIATCRVHDLLRD 509 (885)
Q Consensus 430 ~~k~c~~~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~H~lv~d 509 (885)
..+-.|..++.|...|.-. ...|.+-|-. .....-.....+..+++.+++-.... .++ ..|+.-+-++.
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~-----~~~~~y~~~~a~~ll~~kslv~a~~~-~~~-a~~Rl~eT~r~ 308 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGAD-----VDVPRYLVLLALTLLVDKSLVVALDL-LGR-ARYRLLETGRR 308 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCc-----cccchHHHHHHHHHHhhccchhhhhh-hhH-HHHHHHHHHHH
Confidence 9999999999998766544 3445544322 00011123445667788888765441 111 34566666777
Q ss_pred HHHHHhhh
Q 002750 510 LAIQKAKE 517 (885)
Q Consensus 510 ~~~~~~~~ 517 (885)
|+..+..+
T Consensus 309 YalaeL~r 316 (414)
T COG3903 309 YALAELHR 316 (414)
T ss_pred HHHHHHHh
Confidence 77766544
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.77 E-value=9.5e-08 Score=96.47 Aligned_cols=150 Identities=17% Similarity=0.243 Sum_probs=92.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
.+.+.|+|++|+|||+|++.+++. .......+.|+++.... ....+ +.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~~~------------------------~~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFSPA------------------------VLENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhhHH------------------------HHhhc
Confidence 467899999999999999999987 32233355677754210 00001 11111
Q ss_pred cCceEEEEEecCCCH---HHHHH-HHhhCCCC-CCCcEEEE-Eecc---------hHHhhccCCCCceeecCCCChhhHH
Q 002750 284 QGYSYLVVIDDVWQK---ETWES-LKRAFPDS-KNGSRVIL-TTRI---------REVAERSDERTHAYELPFLRPDESW 348 (885)
Q Consensus 284 ~~~r~LlVlDdv~~~---~~~~~-l~~~l~~~-~~gs~iii-TtR~---------~~v~~~~~~~~~~~~l~~L~~~e~~ 348 (885)
. +.-+||+||+|.. ..|+. +...+... ..|..+|| |++. ..+...+ .....++++++++++.+
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl-~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRL-TWGEIYQLNDLTDEQKI 167 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHH-hcCCeeeCCCCCHHHHH
Confidence 1 1238999999863 45553 32323221 23555554 4443 2333333 23568899999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 349 KLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 349 ~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
+++.+.+....-. --+++..-|++++.|..-.+..+
T Consensus 168 ~iL~~~a~~~~l~--l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 168 IVLQRNAYQRGIE--LSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHH
Confidence 9999988754432 22677888899998777665444
No 41
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.6e-06 Score=91.22 Aligned_cols=289 Identities=19% Similarity=0.244 Sum_probs=168.5
Q ss_pred ccccccccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCccccccc--ceeEEEeccccccHHHHHHHH
Q 002750 180 EENVVGFEDDANKLLAHLLKE--DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKF--ACCAWVSVSQEYRTEDLLMRI 255 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i 255 (885)
++.+.+|+++++++...|... +..+.-+.|+|.+|+|||+.++.+.+. +.... ..+++|++....+...++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 445999999999999988643 223344899999999999999999987 33322 127899999999999999999
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHHHh--cCceEEEEEecCCCHHHH--HHHHhhCCCCC-CCcEEE--EEecchHHhh
Q 002750 256 INSFNIDSPSNLEKMREEDLERCLYQSL--QGYSYLVVIDDVWQKETW--ESLKRAFPDSK-NGSRVI--LTTRIREVAE 328 (885)
Q Consensus 256 l~~l~~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~~~--~~l~~~l~~~~-~gs~ii--iTtR~~~v~~ 328 (885)
+.+++.... ......+....+.+.+ .++.+++|||+++....- +.+...+.... ..++|+ ..+-+..+..
T Consensus 94 ~~~~~~~p~---~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 94 LNKLGKVPL---TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLD 170 (366)
T ss_pred HHHcCCCCC---CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHH
Confidence 999974222 2345566667777776 468899999999754211 22222222211 144443 3444333322
Q ss_pred ccC------CCCceeecCCCChhhHHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCC-chHHHHHHHhhhc---CC--
Q 002750 329 RSD------ERTHAYELPFLRPDESWKLFCEKAFQSFNA---DEGLEKLGREMLEKCGG-LPLAIVVLGGLLS---KK-- 393 (885)
Q Consensus 329 ~~~------~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~---~~~~~~~~~~i~~~~~g-~Plai~~~~~~l~---~~-- 393 (885)
... -....+..+|-+.+|-.+++..++-....+ .+..-+++..++..-+| .=.|+..+-.... ..
T Consensus 171 ~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~ 250 (366)
T COG1474 171 YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGS 250 (366)
T ss_pred HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCC
Confidence 221 123347889999999999999988544332 33333444444444444 3344443332222 11
Q ss_pred ---ChHHHHHHHHHHHHhhhcCchhhhhhhhcccccChHhhhHHHhhhccCCCCCccChHHHHHHH--HHcCcccCCCCC
Q 002750 394 ---KPQEWRIVRDHIWRHLRADSIQISHLLDLSFNDLSYQLKLCFLYLGIFPEDADINIERLIRLI--VAEGFIDQNEDD 468 (885)
Q Consensus 394 ---~~~~w~~~~~~l~~~~~~~~~~~~~~l~~sy~~L~~~~k~c~~~~~~fp~~~~i~~~~li~~w--~a~g~i~~~~~~ 468 (885)
+.+.-..+.... -.....-....||.|.|..+......- ..+....+.... +.+.+-
T Consensus 251 ~~v~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~------ 312 (366)
T COG1474 251 RKVSEDHVREAQEEI----------ERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLR------ 312 (366)
T ss_pred CCcCHHHHHHHHHHh----------hHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhC------
Confidence 111111111111 111223346778888777655444332 344444443332 222111
Q ss_pred ccHHHHHHHHHHHHHHhccccccc
Q 002750 469 QVMEDVAKDILNELINRSLIQIGK 492 (885)
Q Consensus 469 ~~~~~~~~~~l~~L~~~sll~~~~ 492 (885)
. .+....+++++|...+++....
T Consensus 313 ~-~~~~~~~ii~~L~~lgiv~~~~ 335 (366)
T COG1474 313 T-SQRRFSDIISELEGLGIVSASL 335 (366)
T ss_pred c-hHHHHHHHHHHHHhcCeEEeee
Confidence 1 3445678889999999997655
No 42
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=9.4e-07 Score=95.93 Aligned_cols=193 Identities=13% Similarity=0.142 Sum_probs=112.4
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
++++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+.+........... .+..... ...+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~----c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCII----CKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHH----HHHHhcCCC
Confidence 568999999999988886542 34667899999999999999998752211111000 0000000 111111000
Q ss_pred CCCC--CccccccHHHHHHHHHHH----hcCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEEEecch-HHhhccC
Q 002750 261 IDSP--SNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRVILTTRIR-EVAERSD 331 (885)
Q Consensus 261 ~~~~--~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~ 331 (885)
.... ........+++...+... ..+++-++|+|+++.. ..++.+...+...+...++|++|.+. .+.....
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 0000 000001122222211111 1234559999999854 46778888877666677777766543 3333233
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 332 ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 332 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
+....+++.+++.++..+++...+...... ..++.+..|++.++|.|..+
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g~~--i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKESID--TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 445789999999999999888866443221 22466788999999988644
No 43
>PF13173 AAA_14: AAA domain
Probab=98.66 E-value=7.3e-08 Score=87.71 Aligned_cols=121 Identities=20% Similarity=0.211 Sum_probs=83.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
.+++.|.|+.|+||||++++++++.. ....++++++.+........ .+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~-------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD-------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh-------------------hh-hHHHHHHhh
Confidence 36899999999999999999997732 33457777766532211000 00 222333333
Q ss_pred cCceEEEEEecCCCHHHHHHHHhhCCCCCCCcEEEEEecchHHhhc-----cCCCCceeecCCCChhhH
Q 002750 284 QGYSYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTTRIREVAER-----SDERTHAYELPFLRPDES 347 (885)
Q Consensus 284 ~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~-----~~~~~~~~~l~~L~~~e~ 347 (885)
.+++.+++||++.....|......+.+..+..+|++|+........ ..+....+++.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3467789999999888888888887776677899999987765532 234556789999998764
No 44
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=1.7e-06 Score=97.89 Aligned_cols=198 Identities=14% Similarity=0.084 Sum_probs=117.5
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
+++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.......+. +..++. ......|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~---~~PCG~----C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT---SQPCGV----CRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC---CCCCcc----cHHHHHHhcCCC
Confidence 578999999999999986553 345667999999999999998877532111110 001111 111111111000
Q ss_pred CCCC--CccccccHHHHHHHHHHH----hcCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEEEecchH-HhhccC
Q 002750 261 IDSP--SNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRVILTTRIRE-VAERSD 331 (885)
Q Consensus 261 ~~~~--~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~ 331 (885)
.... ........+++.+.+... ..++.-++|||+++.. ..|..++..+..-..+.++|+||++.. +..-+.
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 0000 000111223333333221 1244458999999754 568888888776666788888777553 322223
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchH-HHHHHHh
Q 002750 332 ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPL-AIVVLGG 388 (885)
Q Consensus 332 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 388 (885)
.....+.+..++.++..+.+.+.+...... ...+....|++.++|... ++..+-.
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456789999999999999998876443221 225677889999998664 5555333
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=6.6e-09 Score=107.16 Aligned_cols=179 Identities=20% Similarity=0.163 Sum_probs=117.7
Q ss_pred CcccCCCCeeEeecccccchhhccchhhhhccCCCceEEeeecCCccccccccCCCCCCcceEEEeee-cC-CCChhhhh
Q 002750 700 PDKLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK-IE-KLPEDIHV 777 (885)
Q Consensus 700 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~-~lp~~~~~ 777 (885)
...|++++.|+++.|-+..... .. ..+..+++|+.|+++-+..........-..+++|+.|.|++| +. .--.|+..
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~-v~-~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFP-VL-KIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhCCcceeecchhhhHHhHHH-HH-HHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 4578899999999885533211 11 344567777777776443211111111125688999999987 32 11224444
Q ss_pred cCCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeecCCCcceEEcC-------Cc
Q 002750 778 ILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVDELEEWQVEE-------GA 850 (885)
Q Consensus 778 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~-------~~ 850 (885)
.+|+|+.|+|..|.....-.....-+..|+.|+|++|.+.+.......+.||.|..|+++.+.++++.... ..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 46999999999995222222334557789999999998876554455678999999999999999885422 36
Q ss_pred cccccceeecccccCCCCc--cccCCCCCCCC
Q 002750 851 MPRLRGLRIPEHLKSRIPE--RLRSIPPPAEG 880 (885)
Q Consensus 851 ~~~L~~L~l~~c~~~~lp~--~l~~L~~L~~~ 880 (885)
||+|++|++..|++...++ .+..+++|+-.
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhh
Confidence 8999999999999965554 23444444333
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.65 E-value=3.7e-07 Score=101.03 Aligned_cols=176 Identities=21% Similarity=0.171 Sum_probs=103.9
Q ss_pred cccccccccHHH---HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHH
Q 002750 181 ENVVGFEDDANK---LLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIIN 257 (885)
Q Consensus 181 ~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 257 (885)
+++||.+..+.. +..++... ....+.++|++|+||||+|+.+++. ....| +.++........++.++.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHHHHH
Confidence 457887766554 66666433 4567888999999999999999886 33333 222211111111111111
Q ss_pred HhcCCCCCccccccHHHHHHHHHHH-hcCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEEE--ecchH--Hhhcc
Q 002750 258 SFNIDSPSNLEKMREEDLERCLYQS-LQGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRVILT--TRIRE--VAERS 330 (885)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiT--tR~~~--v~~~~ 330 (885)
..... ..+++.+|++|+++.. ...+.+...+.. |..++|. |.+.. +....
T Consensus 83 --------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 83 --------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred --------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHH
Confidence 11111 1457789999999854 455566655543 4444443 33322 11112
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCchHHHHHHHh
Q 002750 331 DERTHAYELPFLRPDESWKLFCEKAFQSFNAD-EGLEKLGREMLEKCGGLPLAIVVLGG 388 (885)
Q Consensus 331 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plai~~~~~ 388 (885)
......+.+.+++.++.+.++.+.+....... ...++..+.|++.|+|.+..+..+..
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 23457889999999999999988653311111 22356678899999999976644433
No 47
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.63 E-value=2.8e-07 Score=95.07 Aligned_cols=171 Identities=19% Similarity=0.211 Sum_probs=105.0
Q ss_pred cccccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHH
Q 002750 177 YAVEENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRII 256 (885)
Q Consensus 177 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 256 (885)
++.+.+++|-+..+.++++ .+++.-..+|||+|+||||||+.+... ....|. .++...+-.+-++.+
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~-----~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f~-----~~sAv~~gvkdlr~i- 92 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVE-----AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAFE-----ALSAVTSGVKDLREI- 92 (436)
T ss_pred hcChHhhhCCCchHHHHHh-----cCCCceeEEECCCCCCHHHHHHHHHHh--hCCceE-----EeccccccHHHHHHH-
Confidence 4556677777777666665 236777889999999999999999986 444442 222221111111222
Q ss_pred HHhcCCCCCccccccHHHHHHHH-HHHhcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEE--EecchHHh--hc
Q 002750 257 NSFNIDSPSNLEKMREEDLERCL-YQSLQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVIL--TTRIREVA--ER 329 (885)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~l-~~~l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iii--TtR~~~v~--~~ 329 (885)
.+.- .....+++.+|++|+|.. ..+-+.+ ||.-..|.-|+| ||.++... ..
T Consensus 93 -------------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 93 -------------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred -------------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHH
Confidence 2222 122358899999999964 3343444 444456777777 44443221 11
Q ss_pred cCCCCceeecCCCChhhHHHHHHHHHhcCCCC-----ChhHHHHHHHHHHHcCCchHH
Q 002750 330 SDERTHAYELPFLRPDESWKLFCEKAFQSFNA-----DEGLEKLGREMLEKCGGLPLA 382 (885)
Q Consensus 330 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~-----~~~~~~~~~~i~~~~~g~Pla 382 (885)
..+...++.+++|+.++..+++.+.+...... ...-++....++..++|--.+
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 13557899999999999999999854333222 112245677788888886653
No 48
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.61 E-value=1.6e-07 Score=86.18 Aligned_cols=114 Identities=22% Similarity=0.319 Sum_probs=79.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccc-----cceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHK-----FACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLER 277 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 277 (885)
+.+++.|+|++|+|||++++.+.+.. ... -..++|+.+....+...+...++.+++..... ..+..++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL--NAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH--HHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh--HHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cCCHHHHHH
Confidence 35789999999999999999999862 211 34577999988889999999999999986552 335666777
Q ss_pred HHHHHhcCc-eEEEEEecCCCH---HHHHHHHhhCCCCCCCcEEEEEecc
Q 002750 278 CLYQSLQGY-SYLVVIDDVWQK---ETWESLKRAFPDSKNGSRVILTTRI 323 (885)
Q Consensus 278 ~l~~~l~~~-r~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iiiTtR~ 323 (885)
.+.+.+... ..+||+|+++.. ..++.+..... ..+.+||+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777777544 469999999654 34455544433 667788887764
No 49
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.61 E-value=1.1e-06 Score=95.64 Aligned_cols=198 Identities=14% Similarity=0.124 Sum_probs=111.4
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccc-eeEEEeccccccHH-HHHH---HH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFA-CCAWVSVSQEYRTE-DLLM---RI 255 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~-~~~~---~i 255 (885)
++++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+.+... ...+. ..+.+++++..+.. ..+. ..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcCcch
Confidence 56899999999998888544 345688999999999999999987622 12222 23445543321100 0000 00
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHH---Hh--cCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEEEecch-HHh
Q 002750 256 INSFNIDSPSNLEKMREEDLERCLYQ---SL--QGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRVILTTRIR-EVA 327 (885)
Q Consensus 256 l~~l~~~~~~~~~~~~~~~~~~~l~~---~l--~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~ 327 (885)
...++.. . .......+.....+.. .. .+.+-+||+||++.. .....+...+......+++|+|+... .+.
T Consensus 92 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 92 AHFLGTD-K-RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred hhhhhhh-h-hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 0000000 0 0000011112221211 11 133458999999743 34455555554444557788777543 222
Q ss_pred hccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 002750 328 ERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVV 385 (885)
Q Consensus 328 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (885)
.........+++.+++.++...++...+...... --.+..+.+++.++|.+-.+..
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 2223445678999999999999998876443322 2256788888999888765543
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=2e-06 Score=91.72 Aligned_cols=176 Identities=18% Similarity=0.283 Sum_probs=114.9
Q ss_pred ccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCc----ccccccceeEEEec-cccccHHHHHHHHH
Q 002750 182 NVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHN----DVKHKFACCAWVSV-SQEYRTEDLLMRII 256 (885)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~~~~il 256 (885)
+++|-+..++.+..++..+. -.....++|+.|+||||+|+.+++.. ....|.|...|... +.....++ .+++.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 57888888888888886543 34677899999999999999988741 12345565555442 22222222 22222
Q ss_pred HHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCC--CHHHHHHHHhhCCCCCCCcEEEEEecchHHh-hccCCC
Q 002750 257 NSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVW--QKETWESLKRAFPDSKNGSRVILTTRIREVA-ERSDER 333 (885)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~-~~~~~~ 333 (885)
+.+... -..+++-++|+|+++ +.+.+..+...+..-+.++.+|++|.+.+.. ......
T Consensus 83 ~~~~~~-------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 83 EEVNKK-------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHhcC-------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 222211 012344466667664 6678999999999878889999888655422 112345
Q ss_pred CceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHH
Q 002750 334 THAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIV 384 (885)
Q Consensus 334 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 384 (885)
...+++.++++++....+.+... ..+ ++.++.++..++|.|.-+.
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~-~~~-----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYN-DIK-----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhc-CCC-----HHHHHHHHHHcCCCHHHHH
Confidence 67899999999999888866542 111 3447788999999987554
No 51
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=6.5e-09 Score=98.22 Aligned_cols=112 Identities=24% Similarity=0.351 Sum_probs=39.3
Q ss_pred CCCCCCcceEEEeee-cCCCChhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCccc
Q 002750 753 LCDCPCLSDLRLRGK-IEKLPEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRL 831 (885)
Q Consensus 753 l~~~~~L~~L~l~~~-~~~lp~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L 831 (885)
+.++.++++|+|+|+ +..+. .+...+.+|+.|+|++|.++. .+.+..+++|+.|++++|.++.... .....+|+|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-TT-
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCcccc-chHHhCCcC
Confidence 345567888888887 55443 455335788899999998864 3467788889999998888875321 111347889
Q ss_pred ceeEeecCCCcceEE--cCCccccccceeecccccCCCC
Q 002750 832 EILQLLVDELEEWQV--EEGAMPRLRGLRIPEHLKSRIP 868 (885)
Q Consensus 832 ~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~c~~~~lp 868 (885)
+.|.++.|++.++.. ....+|+|+.|++.+||....+
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence 999998888887643 2346888999999999884333
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.57 E-value=2.7e-09 Score=113.34 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=51.5
Q ss_pred cCCCChhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeecCCCcceEEc
Q 002750 768 IEKLPEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVDELEEWQVE 847 (885)
Q Consensus 768 ~~~lp~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~ 847 (885)
++.+|..++ ..+.|..|+.+.|.+. ..+.-++++.+|+.|++..|.+.. ++..... -.|..|+++||++..+|..
T Consensus 155 l~~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~--lp~El~~-LpLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 155 LTSLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED--LPEELCS-LPLIRLDFSCNKISYLPVD 229 (722)
T ss_pred cccCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh--CCHHHhC-CceeeeecccCceeecchh
Confidence 344455555 2455666666666542 444555666666666665555442 1111111 2355566666666666666
Q ss_pred CCccccccceeecccccCCCC
Q 002750 848 EGAMPRLRGLRIPEHLKSRIP 868 (885)
Q Consensus 848 ~~~~~~L~~L~l~~c~~~~lp 868 (885)
...|..|++|.|.+||+.+-|
T Consensus 230 fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhhhhheeeeeccCCCCCCh
Confidence 666666666666666664433
No 53
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.3e-06 Score=97.43 Aligned_cols=198 Identities=16% Similarity=0.115 Sum_probs=115.5
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccc--cceeEEEeccccccHHHHHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHK--FACCAWVSVSQEYRTEDLLMRIINS 258 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~il~~ 258 (885)
+++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+....... -.....-.++. ....+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~----C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ----CRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc----cHHHHHHHcC
Confidence 578999999999999986553 3456789999999999999998765221100 00000000110 0111111100
Q ss_pred hcCCCC--CccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEec-chHHhhc
Q 002750 259 FNIDSP--SNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTR-IREVAER 329 (885)
Q Consensus 259 l~~~~~--~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR-~~~v~~~ 329 (885)
-..+.. ........+++.+.+... ..++.-++|||+++. ...+..++..+..-..++++|++|. ...+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 000000 000112233433333322 135556999999974 4677888888776555666665554 4444433
Q ss_pred cCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 002750 330 SDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVV 385 (885)
Q Consensus 330 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (885)
+......+.+..++.++..+.+.+.+...... ...+..+.|++.++|.|.-...
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 33456789999999999999988776433221 1245668899999999974433
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=98.57 E-value=5.1e-06 Score=93.97 Aligned_cols=184 Identities=15% Similarity=0.145 Sum_probs=113.2
Q ss_pred cccccccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE--DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINS 258 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 258 (885)
++++|.+..++++..|+... +...+.+.|+|++|+||||+|+.+++.. . |+ ++-+++++..+ ...+..++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el--~--~~-~ielnasd~r~-~~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY--G--WE-VIELNASDQRT-ADVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc--C--CC-EEEEccccccc-HHHHHHHHHH
Confidence 56999999999999998643 2236789999999999999999999873 1 22 23334443222 2223333332
Q ss_pred hcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH------HHHHHHHhhCCCCCCCcEEEEEecch-HHhh-cc
Q 002750 259 FNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK------ETWESLKRAFPDSKNGSRVILTTRIR-EVAE-RS 330 (885)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~------~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~-~~ 330 (885)
...... ....++-+||+|+++.. ..+..+...+... +..||+|+.+. .... ..
T Consensus 88 ~~~~~s-----------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 88 AATSGS-----------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLREL 148 (482)
T ss_pred hhccCc-----------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhH
Confidence 211100 01135679999999753 2355565555422 33455555432 2211 12
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhc
Q 002750 331 DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLS 391 (885)
Q Consensus 331 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~ 391 (885)
......+.+.+++.++....+...+....... -.+....|++.++|..-.+......+.
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 23456789999999999998888775433222 256788999999998776544333333
No 55
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.6e-06 Score=100.16 Aligned_cols=195 Identities=16% Similarity=0.142 Sum_probs=114.8
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
+++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++........... .+... .....+.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~---pCg~C----~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT---PCGVC----SSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC---CCCCc----hHHHHHhcCCC
Confidence 578999999999998886542 23456899999999999999998763211110000 00000 00000000000
Q ss_pred ---CCCCCccccccHHHH---HHHHHH-HhcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecch-HHhhcc
Q 002750 261 ---IDSPSNLEKMREEDL---ERCLYQ-SLQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIR-EVAERS 330 (885)
Q Consensus 261 ---~~~~~~~~~~~~~~~---~~~l~~-~l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~ 330 (885)
.... .......+.+ +..+.. ...+++-++|||+++. .+.+..++..+-.-....++|++|.+. .+...+
T Consensus 88 ~DviEid-Aas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TI 166 (944)
T PRK14949 88 VDLIEVD-AASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTV 166 (944)
T ss_pred ceEEEec-cccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHH
Confidence 0000 0000111222 221111 1235667999999974 567888888887666667777665543 333222
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 331 DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 331 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
......+++.+++.++..+++.+.+..... ..-.+.+..|++.++|.|.-+..+
T Consensus 167 lSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 167 LSRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 344678999999999999999887644221 222567788999999988644433
No 56
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.56 E-value=9.3e-07 Score=89.89 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=98.0
Q ss_pred cccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCc
Q 002750 187 EDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSN 266 (885)
Q Consensus 187 ~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~ 266 (885)
+..++.+..++.. ...+.+.|+|++|+|||++|+.+++. ........++++++.-... ...
T Consensus 23 ~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~------------ 83 (226)
T TIGR03420 23 AELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA---DPE------------ 83 (226)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---HHH------------
Confidence 3455666665432 34678899999999999999999876 2223334566665432110 000
Q ss_pred cccccHHHHHHHHHHHhcCceEEEEEecCCCHH---HH-HHHHhhCCC-CCCCcEEEEEecchHHh---------hccCC
Q 002750 267 LEKMREEDLERCLYQSLQGYSYLVVIDDVWQKE---TW-ESLKRAFPD-SKNGSRVILTTRIREVA---------ERSDE 332 (885)
Q Consensus 267 ~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iiiTtR~~~v~---------~~~~~ 332 (885)
+...+.+. -+||+||++... .| +.+...+.. ...+..+|+||+..... ... .
T Consensus 84 ------------~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~-~ 149 (226)
T TIGR03420 84 ------------VLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL-A 149 (226)
T ss_pred ------------HHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH-h
Confidence 11112222 289999997542 33 334333322 12344788888753211 111 1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 002750 333 RTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLG 387 (885)
Q Consensus 333 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (885)
....+++.++++++...++...+...... --++..+.|++.+.|+|..+..+.
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHH
Confidence 23578999999999999998765332211 224666778888888888765553
No 57
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=3.1e-06 Score=94.31 Aligned_cols=196 Identities=20% Similarity=0.188 Sum_probs=115.2
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccc-eeEEEeccccccHHHHHHHHHHHh
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFA-CCAWVSVSQEYRTEDLLMRIINSF 259 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l 259 (885)
.+++|-+..+..+...+..+. -...+.++|+.|+||||+|+.+++......... ...+..+....+ ...+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHHHhcCC
Confidence 468999998888888775542 346788999999999999999987532111110 000111111100 11111000
Q ss_pred cCCCC--CccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEE-EecchHHhhcc
Q 002750 260 NIDSP--SNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVIL-TTRIREVAERS 330 (885)
Q Consensus 260 ~~~~~--~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iii-TtR~~~v~~~~ 330 (885)
..... ........+++...+... ..+++-++|+|+++. ...+..+...+......+.+|+ ||+...+....
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 00000 000111233333332222 235667899999985 4678888888876666666665 44444444433
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 331 DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 331 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
......+++.+++.++...++...+...... ...+....|++.++|.+.-+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 3455789999999999999999888544322 12456778999999987544
No 58
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.3e-06 Score=95.77 Aligned_cols=194 Identities=18% Similarity=0.147 Sum_probs=115.8
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
+++||.+...+.+..++..+. -...+.++|+.|+||||+|+.+++...... |+... .+......+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~~-pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTST-PCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCCC-CCccCHHHHHHhcCCC
Confidence 578999999999999987553 346788999999999999999987522111 11100 0111111111111000
Q ss_pred CCC--CCccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecchH-HhhccC
Q 002750 261 IDS--PSNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIRE-VAERSD 331 (885)
Q Consensus 261 ~~~--~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~ 331 (885)
.+- -........+++.+.+... ..+++-++|+|+++. ......+...+.....+.++|++|.+.. +.....
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 000 0000111233333322211 235566899999974 4567778877776666777887776532 221222
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHH
Q 002750 332 ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIV 384 (885)
Q Consensus 332 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 384 (885)
.....+++.+++.++..+.+.+.+...... .-.+....|++.++|.+..+.
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 456789999999999999998877543322 225667889999999885443
No 59
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=3.9e-06 Score=94.02 Aligned_cols=193 Identities=17% Similarity=0.092 Sum_probs=115.0
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
++++|.+..++.+..++..+. -...+.++|++|+||||+|+.+++.....+.+...+|.|.+.. .+.......+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceEEec
Confidence 468999988888888886543 3456789999999999999999876322222222333332110 00000000000000
Q ss_pred CCCCCccccccHHHHHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEEEec-chHHhhccCC
Q 002750 261 IDSPSNLEKMREEDLERCLYQS-----LQGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRVILTTR-IREVAERSDE 332 (885)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR-~~~v~~~~~~ 332 (885)
.. .....+.+.+ +.+. ..+++-++|+|+++.. ..+..+...+......+.+|++|. ...+...+..
T Consensus 92 ~~-----~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 92 AA-----SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred cc-----ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 00 0111222222 2222 2345568999999743 567888888776555556655554 3344333334
Q ss_pred CCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 333 RTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 333 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
....+++.+++.++..+++.+.+...... .-++....|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 56789999999999999999877543322 12567888999999988654
No 60
>PTZ00202 tuzin; Provisional
Probab=98.47 E-value=1.4e-05 Score=84.31 Aligned_cols=169 Identities=15% Similarity=0.167 Sum_probs=104.5
Q ss_pred cccccccccccccHHHHHHHHhcCC-CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHH
Q 002750 177 YAVEENVVGFEDDANKLLAHLLKED-PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRI 255 (885)
Q Consensus 177 ~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (885)
+.+...|+||+++..++...|...+ ...+++.|+|++|+|||||++.+..... ...++.... +..+++..+
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHHH
Confidence 4667789999999999999996543 2456999999999999999999997632 123333333 679999999
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHHHh-c-CceEEEEEe--cCCCHH-HHHHHHhhCCCCCCCcEEEEEecchHHhh--
Q 002750 256 INSFNIDSPSNLEKMREEDLERCLYQSL-Q-GYSYLVVID--DVWQKE-TWESLKRAFPDSKNGSRVILTTRIREVAE-- 328 (885)
Q Consensus 256 l~~l~~~~~~~~~~~~~~~~~~~l~~~l-~-~~r~LlVlD--dv~~~~-~~~~l~~~l~~~~~gs~iiiTtR~~~v~~-- 328 (885)
+.+++.+... ....-...+.+.+.+.- . +++.+||+- +-.+.. .+.+. -.|.....-|+|++----+.+.-
T Consensus 330 L~ALGV~p~~-~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~ 407 (550)
T PTZ00202 330 VKALGVPNVE-ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIAN 407 (550)
T ss_pred HHHcCCCCcc-cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhc
Confidence 9999973321 11111233333333332 2 666666663 222221 12221 12333334566776544333221
Q ss_pred ccCCCCceeecCCCChhhHHHHHHHHH
Q 002750 329 RSDERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 329 ~~~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
..-..-..|.+++++.+++.++..+..
T Consensus 408 ~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 408 TLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ccCccceeEecCCCCHHHHHHHHhhcc
Confidence 112344678899999999999887754
No 61
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.46 E-value=2.9e-07 Score=90.40 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=32.6
Q ss_pred ccccccccHHHHHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 002750 182 NVVGFEDDANKLLAHLL-KEDPRRSVISIFGMGGLGKTTLARKLYHHN 228 (885)
Q Consensus 182 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 228 (885)
.||||+++++++...+. ......+++.|+|++|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999994 223467999999999999999999998873
No 62
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=4.4e-06 Score=90.99 Aligned_cols=195 Identities=14% Similarity=0.069 Sum_probs=113.8
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
+++||.+..+..+..++..+. -...+.++|+.|+||||+|+.+++..... .... ...+....+-..+.......+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCCccce
Confidence 568999999998888886553 23467899999999999999998762211 1100 0111111111111111000000
Q ss_pred CCCCCccccccHHHH---HHHHHHH-hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEec-chHHhhccCCC
Q 002750 261 IDSPSNLEKMREEDL---ERCLYQS-LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTR-IREVAERSDER 333 (885)
Q Consensus 261 ~~~~~~~~~~~~~~~---~~~l~~~-l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR-~~~v~~~~~~~ 333 (885)
.-.. ......+.+ .+.+... ..++.-++|+|+++. .+.+..+...+........+|++|. ...+.......
T Consensus 94 EIda--as~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 94 EIDA--ASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred eech--hhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 0000 001112222 2222211 235566999999974 4678888887765555565554444 44443333345
Q ss_pred CceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 334 THAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 334 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
...|.+.+++.++..+++.+.+...... .-++....|++.++|.+.-.
T Consensus 172 Cq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 172 CQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHHHH
Confidence 6789999999999999998876543322 22567888999999998643
No 63
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=6.3e-06 Score=92.43 Aligned_cols=183 Identities=18% Similarity=0.173 Sum_probs=112.8
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccc-------------------ccceeEEEe
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKH-------------------KFACCAWVS 241 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~ 241 (885)
++++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++...... .|...+++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 468999999999998886542 345678999999999999999986421100 111122222
Q ss_pred ccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHH-hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEE
Q 002750 242 VSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQS-LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVI 318 (885)
Q Consensus 242 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~ii 318 (885)
.......+ +..++.+.+... ..+++-++|+|+++. ...++.+...+......+.+|
T Consensus 95 aas~~gvd---------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 95 AASRTGVE---------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred cccccCHH---------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 11111110 111222222211 235666999999974 467788888887766667666
Q ss_pred EEec-chHHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchH-HHHHHH
Q 002750 319 LTTR-IREVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPL-AIVVLG 387 (885)
Q Consensus 319 iTtR-~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~ 387 (885)
++|. ...+..........+++.+++.++....+.+.+..... ..-+.....|++.++|.+. |+..+-
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5554 33333223345678999999999998888876543221 2225667889999999764 444443
No 64
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.44 E-value=1.8e-07 Score=88.45 Aligned_cols=129 Identities=29% Similarity=0.353 Sum_probs=46.8
Q ss_pred cCceeEEEeccccccccccccccCCCchhhc-ccccccEEEecCCCCCCCCccccCCCCccEEecCCC-cccCChhhc-c
Q 002750 585 SFSLLRVYDAEVVNRFRTGIFSEFPLPVEIG-QLIHLKYLRLRNSPIDNLPPSIEKLQRLQTLDLSDT-LCGIPTEIS-K 661 (885)
Q Consensus 585 ~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~~-~~~lp~~i~-~ 661 (885)
+...++.|+|.++. +. .+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++| +.+++..+. .
T Consensus 17 n~~~~~~L~L~~n~------I~--~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ------IS--TIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccc------cc--ccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHh
Confidence 44467889999888 76 453 455 5778899999999988885 5778889999999885 556765553 5
Q ss_pred ccccccccccccccccccCccCCCccCccccccccccCCcccCCCCeeEeecccccchhhccchhhhhccCCCceEEee
Q 002750 662 LTELRHLIGNFSGYLPIENLTNLRTLKYVSVESWNRLSPDKLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIK 740 (885)
Q Consensus 662 L~~L~~L~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~ 740 (885)
+++|++|+.... .+.++..+ ..+..+++|+.|++.+|.+.....-.. ..+..+++|+.|+-.
T Consensus 87 lp~L~~L~L~~N------~I~~l~~l----------~~L~~l~~L~~L~L~~NPv~~~~~YR~-~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNN------KISDLNEL----------EPLSSLPKLRVLSLEGNPVCEKKNYRL-FVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS---------SCCCC----------GGGGG-TT--EEE-TT-GGGGSTTHHH-HHHHH-TT-SEETTE
T ss_pred CCcCCEEECcCC------cCCChHHh----------HHHHcCCCcceeeccCCcccchhhHHH-HHHHHcChhheeCCE
Confidence 788887732111 11122211 224467889999999988765432222 556677888888764
No 65
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.42 E-value=4.4e-06 Score=84.68 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=90.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQS 282 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~ 282 (885)
..+.+.|+|++|+|||+|++.+++.. ...-..+.++++..... ...+..+.+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~-----------------------~~~~~~~~~~-- 96 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW-----------------------FVPEVLEGME-- 96 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh-----------------------hhHHHHHHhh--
Confidence 34688999999999999999998762 22223456766543100 0011111111
Q ss_pred hcCceEEEEEecCCCH---HHHHHHH-hhCCC-CCCC-cEEEEEecchHHh---------hccCCCCceeecCCCChhhH
Q 002750 283 LQGYSYLVVIDDVWQK---ETWESLK-RAFPD-SKNG-SRVILTTRIREVA---------ERSDERTHAYELPFLRPDES 347 (885)
Q Consensus 283 l~~~r~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-s~iiiTtR~~~v~---------~~~~~~~~~~~l~~L~~~e~ 347 (885)
. --+|++||+... ..|+... ..+.. ...| .++|+||+..... ..+ ....++++.++++++-
T Consensus 97 --~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl-~~g~~~~l~~~~~~~~ 172 (235)
T PRK08084 97 --Q-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRL-DWGQIYKLQPLSDEEK 172 (235)
T ss_pred --h-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHH-hCCceeeecCCCHHHH
Confidence 1 137899999643 3454332 22221 1123 4699999854322 111 3457899999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 348 WKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 348 ~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
.+++.+++....- .--+++..-|++++.|..-.+..+
T Consensus 173 ~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 173 LQALQLRARLRGF--ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 9999886644322 222677888888888776655443
No 66
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.42 E-value=1.1e-05 Score=88.36 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=112.1
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc--c------------------ccceeEEE
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVK--H------------------KFACCAWV 240 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~------------------~f~~~~wv 240 (885)
.+++|.+..++.+..++..+. -...+.++|++|+||||+|+.+.+..... . +++ .+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEe
Confidence 468999999999999886543 34678899999999999998887652111 0 111 1222
Q ss_pred eccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHH-hcCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEE
Q 002750 241 SVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQS-LQGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRV 317 (885)
Q Consensus 241 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 317 (885)
+....... +..+++ .+.+... ..+++-++|+|+++.. .....+...+......+.+
T Consensus 92 ~~~~~~~~-~~~~~l--------------------~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 92 DAASNNGV-DDIREI--------------------LDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred eccccCCH-HHHHHH--------------------HHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 21110010 011111 1111111 1244458899998643 5677787777655566777
Q ss_pred EEEecchH-HhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 002750 318 ILTTRIRE-VAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLG 387 (885)
Q Consensus 318 iiTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (885)
|++|.+.. +..........+++.++++++..+++...+....... -++.+..+++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHHH
Confidence 77765443 2322223456789999999999999988764433221 25678889999999987654443
No 67
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5.5e-06 Score=91.07 Aligned_cols=201 Identities=11% Similarity=0.102 Sum_probs=114.4
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEe-ccccccHHHHHHHHHHHh
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVS-VSQEYRTEDLLMRIINSF 259 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~il~~l 259 (885)
++++|.+..++.+..++..+. -...+.++|++|+||||+|+.+.+............|.. ....+..-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 578899988888888886542 234577999999999999999887532211111111110 001111111111111110
Q ss_pred cCCC--CCccccccHHHHHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEe-cchHHhhc
Q 002750 260 NIDS--PSNLEKMREEDLERCLYQSL-----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTT-RIREVAER 329 (885)
Q Consensus 260 ~~~~--~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~ 329 (885)
.... .........+++.+ +.+.+ .+++-++|+|+++. ...++.+...+......+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 0000 00001112333333 22222 24556889999974 457888888887666677666555 43444332
Q ss_pred cCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 002750 330 SDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVV 385 (885)
Q Consensus 330 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (885)
.......+++.++++++....+...+..... ..-++.+..|++.++|.+--+..
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2233567899999999999888877643221 12267788999999998864433
No 68
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=5.3e-06 Score=94.43 Aligned_cols=196 Identities=17% Similarity=0.130 Sum_probs=115.3
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
+++||.+..++.+...+..+. -...+.++|+.|+||||+|+.+.+.......+. ...+......+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 578999999999988886543 235578999999999999999987522111000 001111111111111000
Q ss_pred CCCC--CccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecch-HHhhccC
Q 002750 261 IDSP--SNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIR-EVAERSD 331 (885)
Q Consensus 261 ~~~~--~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~ 331 (885)
.+.. ........+++.+.+... ..+++-++|+|+++. ......+...+-.-....++|++|.+. .+...+.
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH
Confidence 0000 000011223333222221 245667999999974 467788888777666666666655543 3332223
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 332 ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 332 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
.....+.+.+++.++...++.+.+...... ........|++.++|.+.-+..+
T Consensus 168 SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 168 SRCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hhheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 456789999999999999998876332221 22466788999999988744433
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=98.40 E-value=5.4e-06 Score=88.56 Aligned_cols=181 Identities=16% Similarity=0.148 Sum_probs=105.9
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccc-eeEEEeccccccHHHHHHHHHHHh
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFA-CCAWVSVSQEYRTEDLLMRIINSF 259 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l 259 (885)
++++|.++.++.+..++..+ +.+-+.++|++|+||||+|..+++.. ....|. .++-++.++....+ .++.++..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHHHHHH
Confidence 46889888888887776543 34557799999999999999998762 122222 11112222221111 222222221
Q ss_pred cCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEEEecch-HHhhccCCCCce
Q 002750 260 NIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRVILTTRIR-EVAERSDERTHA 336 (885)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~~~~~~ 336 (885)
..... ..-.++.-++|+|+++.. .....+...+...+..+++|+++... .+..........
T Consensus 89 ~~~~~----------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 89 AQKKV----------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred Hhccc----------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 11000 000134568999999754 44455555554444567777766533 222212233567
Q ss_pred eecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 337 YELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 337 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
+++.++++++....+...+....-.. -++....|++.++|..-.+
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 89999999999999988775433221 2566788999998876543
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.40 E-value=9.7e-06 Score=87.33 Aligned_cols=180 Identities=15% Similarity=0.163 Sum_probs=107.9
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEec--cccccHHHHHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSV--SQEYRTEDLLMRIINS 258 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~il~~ 258 (885)
++++|+++.++.+..++..+ ..+.+.|+|++|+||||+|+.+.+... ...+. ..++.+ +...... ...+.+.+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHHHHHH
Confidence 45889999999999988654 344579999999999999999987621 11121 112222 2211111 11122221
Q ss_pred hcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecch-HHhhccCCCCc
Q 002750 259 FNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIR-EVAERSDERTH 335 (885)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~~~~~ 335 (885)
+....+ .....+-++++|+++. .+....+...+......+.+|+++... .+.........
T Consensus 92 ~~~~~~-----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 92 FARTAP-----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHhcCC-----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 111110 0012345899999864 344566666666545566777776432 12111112345
Q ss_pred eeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHH
Q 002750 336 AYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIV 384 (885)
Q Consensus 336 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 384 (885)
.+++.+++.++...++...+...... -.++....+++.++|.+.-+.
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 78999999999999988877543322 225678888999999887543
No 71
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.2e-05 Score=89.27 Aligned_cols=199 Identities=17% Similarity=0.140 Sum_probs=109.6
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
+++||.+...+.+...+..+. -...+.++|++|+||||+|+.+++.......-. +..+. .......+...-.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~---~~pc~----~c~~c~~i~~g~~ 85 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKG---VEPCN----ECRACRSIDEGTF 85 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCCCc----ccHHHHHHhcCCC
Confidence 568999888777777765442 335678999999999999999987521111000 00000 0000000000000
Q ss_pred CCCC--CccccccHHHHHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEEEec-chHHhhcc
Q 002750 261 IDSP--SNLEKMREEDLERCLYQS-----LQGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRVILTTR-IREVAERS 330 (885)
Q Consensus 261 ~~~~--~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR-~~~v~~~~ 330 (885)
.... ........+++. .+.+. ..+++-++|+|+++.. ...+.+...+...+....+|++|. ...+....
T Consensus 86 ~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L 164 (472)
T PRK14962 86 MDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTI 164 (472)
T ss_pred CccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHH
Confidence 0000 000001112221 12221 2245669999999753 456667777665444555554443 34444434
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCc-hHHHHHHHhhh
Q 002750 331 DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGL-PLAIVVLGGLL 390 (885)
Q Consensus 331 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~~l 390 (885)
......+++.+++.++....+...+...... .-++....|++.++|. +.++..+-.+.
T Consensus 165 ~SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 165 ISRCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred hcCcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4556789999999999999988877443222 2256677888887654 56666665433
No 72
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=6e-06 Score=88.16 Aligned_cols=200 Identities=15% Similarity=0.150 Sum_probs=118.2
Q ss_pred ccccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccc--ccceeEEEeccccccHHHHHHHH
Q 002750 178 AVEENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKH--KFACCAWVSVSQEYRTEDLLMRI 255 (885)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i 255 (885)
..-..++|.+...+.+...+..+. -...+.|+|+.|+||||+|..+.+...... .+... .....+......+.+
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 445678999999999999886653 345688999999999999998877521110 01111 001111111122222
Q ss_pred HHH-------hcCC--CC--CccccccHHHHHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEE
Q 002750 256 INS-------FNID--SP--SNLEKMREEDLERCLYQSL-----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRV 317 (885)
Q Consensus 256 l~~-------l~~~--~~--~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~i 317 (885)
... +..+ .. .....+..+++. .+.+.+ .+++-++|+|+++. ......+...+..-.....+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 221 1000 00 001123345443 344443 34566999999974 45667777777654444554
Q ss_pred E-EEecchHHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 318 I-LTTRIREVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 318 i-iTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
| +|++...+..........+.+.+++.++..+++.+..... . ..++....+++.++|.|.....+
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4 4544444433334556789999999999999998743211 1 11455778999999999865443
No 73
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.39 E-value=2.9e-06 Score=79.72 Aligned_cols=123 Identities=19% Similarity=0.100 Sum_probs=71.8
Q ss_pred ccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCC
Q 002750 184 VGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDS 263 (885)
Q Consensus 184 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 263 (885)
+|++..++.+...+... ..+.+.|+|++|+||||+++.+++... ..-..++++.+.+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 37788888888887543 356888999999999999999998732 222346677665433222111110000
Q ss_pred CCccccccHHHHHHHHHHHhcCceEEEEEecCCCH--H---HHHHHHhhCCCC---CCCcEEEEEecchH
Q 002750 264 PSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK--E---TWESLKRAFPDS---KNGSRVILTTRIRE 325 (885)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~---~~~~l~~~l~~~---~~gs~iiiTtR~~~ 325 (885)
............++.++|+||++.. . .+..+...+... ..+..||+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111223456789999999853 2 223333333221 35788888887553
No 74
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=1.5e-08 Score=101.83 Aligned_cols=246 Identities=19% Similarity=0.197 Sum_probs=130.5
Q ss_pred hHHhHhccCceeEEEeccccccccccccccC---CCchhhcccccccEEEecCCC----CCCCCcc-------ccCCCCc
Q 002750 578 DLRWLFTSFSLLRVYDAEVVNRFRTGIFSEF---PLPVEIGQLIHLKYLRLRNSP----IDNLPPS-------IEKLQRL 643 (885)
Q Consensus 578 ~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~---~lp~~i~~l~~Lr~L~L~~~~----i~~lp~~-------i~~L~~L 643 (885)
........+..+..|+|++|. +... .+...+.+.+.|+.-++++-. ..++|+. +-..++|
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt------~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNT------FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKL 94 (382)
T ss_pred hHHHHhcccCceEEEeccCCc------hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCce
Confidence 344667888999999999998 5421 244556777889999988722 2355553 3456689
Q ss_pred cEEecCCCccc--CChhhccccccccccccccccccccCccCCCccCccccccccc---------------cCCcccCCC
Q 002750 644 QTLDLSDTLCG--IPTEISKLTELRHLIGNFSGYLPIENLTNLRTLKYVSVESWNR---------------LSPDKLINL 706 (885)
Q Consensus 644 ~~L~Ls~~~~~--lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~~~~~~~~~---------------~~l~~l~~L 706 (885)
++||||.|-.. -+..+..+ +.+.++|++|..-++.-... .-.+.-++|
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~l---------------l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~L 159 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEEL---------------LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKL 159 (382)
T ss_pred eEeeccccccCccchHHHHHH---------------HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcce
Confidence 99999986333 22222211 22345555554444431100 012233455
Q ss_pred CeeEeecccccchhhccchhhhhccCCCceEEeeecCCccccccccCCCCCCcceEEEeeecCCCChhhhhcCCCccEEE
Q 002750 707 RELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGKIEKLPEDIHVILPNLECLS 786 (885)
Q Consensus 707 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~lp~~~~~~l~~L~~L~ 786 (885)
+.+....|...+.........+...+.|+...+..++...... ..+...+.. +++|+.|+
T Consensus 160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-------------------~al~eal~~-~~~LevLd 219 (382)
T KOG1909|consen 160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-------------------TALAEALEH-CPHLEVLD 219 (382)
T ss_pred EEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh-------------------HHHHHHHHh-CCcceeee
Confidence 5555555554333332222333344444444444333211100 011122233 47777777
Q ss_pred EeccCCCCC----ChhHHhcCcCCCceEeeccccCCeEEe----ecCCCCcccceeEeecCCCcce-----EEcCCcccc
Q 002750 787 LEDSNLDDD----PMPELEKMSNLVILDLSYDSYSGKKLF----CTAKGFPRLEILQLLVDELEEW-----QVEEGAMPR 853 (885)
Q Consensus 787 L~~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~l-----~~~~~~~~~ 853 (885)
|.+|.++.. ....+..+|+|+.|++++|.+...... ....++|+|+.|.+.+|.++.= .......|.
T Consensus 220 l~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d 299 (382)
T KOG1909|consen 220 LRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD 299 (382)
T ss_pred cccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh
Confidence 777766532 223455566777777777666543211 1123467777777777766531 112233677
Q ss_pred ccceeeccccc
Q 002750 854 LRGLRIPEHLK 864 (885)
Q Consensus 854 L~~L~l~~c~~ 864 (885)
|+.|+|++|..
T Consensus 300 L~kLnLngN~l 310 (382)
T KOG1909|consen 300 LEKLNLNGNRL 310 (382)
T ss_pred hHHhcCCcccc
Confidence 88888888776
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=6.9e-06 Score=92.99 Aligned_cols=192 Identities=16% Similarity=0.120 Sum_probs=112.5
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHH--
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINS-- 258 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~-- 258 (885)
+++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+........ -+..++... ..+.+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~C~----sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGVCQ----SCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCcccH----HHHHHhccCc
Confidence 578999999999999987543 34578899999999999999987752111110 011111100 00000000
Q ss_pred ---hcCCCCCccccccHHHHHHHHHHH----hcCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEEEecchH-Hhh
Q 002750 259 ---FNIDSPSNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRVILTTRIRE-VAE 328 (885)
Q Consensus 259 ---l~~~~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~ 328 (885)
+..... .....+.+.+.+... ..+++-++|+|+++.. .....+...+..-...+++|++|.+.. +..
T Consensus 88 ~DvlEidaA---s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 88 VDLLEIDAA---SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred cceEEEecc---ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 000000 111222332222211 2345568999999754 456667777765555667777765432 222
Q ss_pred ccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 002750 329 RSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVV 385 (885)
Q Consensus 329 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (885)
...+....+.+.+++.++....+.+.+...... ...+....|++.++|.+.-+..
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHHHH
Confidence 222345678899999999999998877543322 2256788999999998864433
No 76
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.2e-05 Score=91.49 Aligned_cols=198 Identities=15% Similarity=0.147 Sum_probs=114.5
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccccc--ceeEEEeccccccHHHHHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKF--ACCAWVSVSQEYRTEDLLMRIINS 258 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~ 258 (885)
+++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+........ .....-.++ .....+.|-..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg----~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG----VCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC----ccHHHHHHHcC
Confidence 568998888888888886653 34667899999999999999986542111100 000000111 11111111100
Q ss_pred hcCCC--CCccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEec-chHHhhc
Q 002750 259 FNIDS--PSNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTR-IREVAER 329 (885)
Q Consensus 259 l~~~~--~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR-~~~v~~~ 329 (885)
-..+. -........+++.+.+... ..++.-++|||+++. ...+..+...+..-....++|++|. ...+...
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 00000 0000112233333333221 123445899999974 4677888888877666667776654 3333322
Q ss_pred cCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 002750 330 SDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVV 385 (885)
Q Consensus 330 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (885)
.......+++.+++.++..+.+.+.+...... ...+....|++.++|.+.-+..
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 33456789999999999999998876443322 1256678889999998765433
No 77
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=1.2e-05 Score=87.14 Aligned_cols=189 Identities=14% Similarity=0.095 Sum_probs=108.6
Q ss_pred cccccccccHHHHHHHHhcCCC--------CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDP--------RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLL 252 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 252 (885)
++++|-+..++.+..++..+.. -...+.++|++|+|||++|+.+.+.......- +..++.. ..-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~~~Cg~C----~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----EPGCGEC----RAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----CCCCCCC----HHH
Confidence 3578999999999988865421 34668899999999999999987642111000 0011111 001
Q ss_pred HHHHHHhcCC----CCCccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEec
Q 002750 253 MRIINSFNID----SPSNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTR 322 (885)
Q Consensus 253 ~~il~~l~~~----~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR 322 (885)
+.+...-..+ .+ .......+++...+... ..+++-++|+|+++. ......+...+.....+..+|++|.
T Consensus 77 ~~~~~~~hpD~~~i~~-~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 77 RTVLAGTHPDVRVVAP-EGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred HHHhcCCCCCEEEecc-ccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 1111000000 00 00112233333222211 124455888899975 4556667777766555666666655
Q ss_pred c-hHHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 002750 323 I-REVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVV 385 (885)
Q Consensus 323 ~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (885)
+ ..+...+......+.+.+++.++..+.+..... . . ++.+..++..++|.|.....
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--~--~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--V--D---PETARRAARASQGHIGRARR 212 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--C--C---HHHHHHHHHHcCCCHHHHHH
Confidence 4 344333334567899999999999988875431 1 1 45578899999999975433
No 78
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.37 E-value=9.5e-08 Score=96.17 Aligned_cols=250 Identities=17% Similarity=0.145 Sum_probs=152.0
Q ss_pred CCCCCccceeEEeeccchhhhHHHhhhHHhHhccCceeEEEeccccccccccccccCCCch-------hhcccccccEEE
Q 002750 552 QDDNNLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPV-------EIGQLIHLKYLR 624 (885)
Q Consensus 552 ~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~-------~i~~l~~Lr~L~ 624 (885)
....+..+..+.+.++.+.. .--+.+...+.+-+.|+..++++.-.-+. .. ++|+ .+-.+++|++|+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~--EAa~~i~~~L~~~~~L~~v~~sd~ftGR~--~~--Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGT--EAARAIAKVLASKKELREVNLSDMFTGRL--KD--EIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred HhcccCceEEEeccCCchhH--HHHHHHHHHHhhcccceeeehHhhhcCCc--HH--HHHHHHHHHHHHHhcCCceeEee
Confidence 34456677888888887642 22234567788889999999997653221 11 4443 445678999999
Q ss_pred ecCCCCC-C----CCccccCCCCccEEecCCCccc-CCh-hhccccccccccccccccccccCccCCCccCccccccccc
Q 002750 625 LRNSPID-N----LPPSIEKLQRLQTLDLSDTLCG-IPT-EISKLTELRHLIGNFSGYLPIENLTNLRTLKYVSVESWNR 697 (885)
Q Consensus 625 L~~~~i~-~----lp~~i~~L~~L~~L~Ls~~~~~-lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~~~~~~~~~ 697 (885)
||+|-+. . +-.-+.+++.|+.|.|.++-.. ... .++ ..|.+|..+ ....+-..|+.+.+..|..
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~~~-------kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELAVN-------KKAASKPKLRVFICGRNRL 169 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHHHH-------hccCCCcceEEEEeecccc
Confidence 9999876 2 2234567889999998874322 111 111 112222100 0112223455555555544
Q ss_pred cC---------CcccCCCCeeEeecccccchhhccchhhhhccCCCceEEeeecCC---ccccccccCCCCCCcceEEEe
Q 002750 698 LS---------PDKLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGE---RSFDLLQPLCDCPCLSDLRLR 765 (885)
Q Consensus 698 ~~---------l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~---~~~~~~~~l~~~~~L~~L~l~ 765 (885)
.. +...+.|+.+.+..|.+..........++..+++|+.|+++.+.. ....+...++.+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 33 335578888999888775544444447788889999998875432 122234456667778888877
Q ss_pred eec-C-----CCChhhhhcCCCccEEEEeccCCCCCChh----HHhcCcCCCceEeecccc
Q 002750 766 GKI-E-----KLPEDIHVILPNLECLSLEDSNLDDDPMP----ELEKMSNLVILDLSYDSY 816 (885)
Q Consensus 766 ~~~-~-----~lp~~~~~~l~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~L~~n~~ 816 (885)
.|+ . .+-..+....|+|+.|.|.+|.++.+... .....|.|..|+|++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 762 1 12233333357888888888877653222 335577888888888877
No 79
>PRK08727 hypothetical protein; Validated
Probab=98.37 E-value=6e-06 Score=83.61 Aligned_cols=147 Identities=20% Similarity=0.103 Sum_probs=87.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
...+.|+|++|+|||+|++.+++. .......+.|+++.+. ...+. ..+. .+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~~------~~~~~--------------------~~~~-~l 91 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQAA------AGRLR--------------------DALE-AL 91 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHHh------hhhHH--------------------HHHH-HH
Confidence 356999999999999999999876 2333335667764321 11100 0111 11
Q ss_pred cCceEEEEEecCCCH---HHHHHHHhhCC-C-CCCCcEEEEEecchHH---------hhccCCCCceeecCCCChhhHHH
Q 002750 284 QGYSYLVVIDDVWQK---ETWESLKRAFP-D-SKNGSRVILTTRIREV---------AERSDERTHAYELPFLRPDESWK 349 (885)
Q Consensus 284 ~~~r~LlVlDdv~~~---~~~~~l~~~l~-~-~~~gs~iiiTtR~~~v---------~~~~~~~~~~~~l~~L~~~e~~~ 349 (885)
.+.-+||+||+... ..|....-.+. . ...|..||+|++...- .... .....+++++++.++..+
T Consensus 92 -~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl-~~~~~~~l~~~~~e~~~~ 169 (233)
T PRK08727 92 -EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL-AQCIRIGLPVLDDVARAA 169 (233)
T ss_pred -hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH-hcCceEEecCCCHHHHHH
Confidence 12238999999643 23433222222 1 1245679999984321 1111 224688999999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 350 LFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 350 lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
++.+++....-. .-++....|++.++|-.-.+
T Consensus 170 iL~~~a~~~~l~--l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 170 VLRERAQRRGLA--LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 999877543222 22567778888887665544
No 80
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.37 E-value=1.1e-05 Score=80.59 Aligned_cols=185 Identities=17% Similarity=0.162 Sum_probs=100.3
Q ss_pred cccccccc-ccHHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHH
Q 002750 180 EENVVGFE-DDANKLLAHLLKE-DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIIN 257 (885)
Q Consensus 180 ~~~~vGr~-~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 257 (885)
+..++|-. +..-.....+... +.....+.|+|+.|+|||.|.+++++.......-..+++++ .+++...+..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHH
Confidence 34445643 3333444444443 33455688999999999999999998722111112466665 3445555555
Q ss_pred HhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH---HHHHHHHh-hCCC-CCCCcEEEEEecchHH------
Q 002750 258 SFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK---ETWESLKR-AFPD-SKNGSRVILTTRIREV------ 326 (885)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~---~~~~~l~~-~l~~-~~~gs~iiiTtR~~~v------ 326 (885)
.+... .. ..+.+.+.+-. +|++||++.. ..|..... .+.. ...|.+||+|++....
T Consensus 82 ~~~~~--------~~----~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 82 ALRDG--------EI----EEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHTT--------SH----HHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHcc--------cc----hhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 44331 11 12333343322 8899999743 33433222 2221 1346689999964421
Q ss_pred ---hhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 327 ---AERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 327 ---~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
.... .....+++.+.++++..+++.+.+....-. --++++.-|++.+.+..-.+..+
T Consensus 149 ~~L~SRl-~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 149 PDLRSRL-SWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHH-HCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhhhhH-hhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHH
Confidence 1111 345678999999999999999988654433 22567777888776665554433
No 81
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.37 E-value=4.5e-06 Score=80.61 Aligned_cols=178 Identities=22% Similarity=0.190 Sum_probs=96.3
Q ss_pred ccccccccccHHHHHHHHhc---CCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHH
Q 002750 180 EENVVGFEDDANKLLAHLLK---EDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRII 256 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 256 (885)
-++|||.+.-++.+.-++.. ....+.-+.++||+|+||||||.-+.+. ....|. +.+...-...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~i~k~-------- 89 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPAIEKA-------- 89 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC--SC--------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchhhhhH--------
Confidence 36899999888876555432 2345778899999999999999999987 444442 2332110001
Q ss_pred HHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH--HHHHHHHhhCCCC--------CCC-----------c
Q 002750 257 NSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK--ETWESLKRAFPDS--------KNG-----------S 315 (885)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~l~~~l~~~--------~~g-----------s 315 (885)
.+++..+. .+ +++-+|++|++... ..-+.+..++.++ +++ +
T Consensus 90 ----------------~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 90 ----------------GDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ----------------HHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ----------------HHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 11111111 12 23347778998643 3333343333221 111 2
Q ss_pred EEEEEecchHHhhccCCCCc-eeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 002750 316 RVILTTRIREVAERSDERTH-AYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLL 390 (885)
Q Consensus 316 ~iiiTtR~~~v~~~~~~~~~-~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (885)
-|=-|||...+..-...... ..+++..+.+|-..+..+.+..-. .+..++.+.+|++++.|-|--..-+-..+
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 23357776555544433333 357999999999999987653332 23346889999999999997655444433
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=9.7e-06 Score=91.10 Aligned_cols=195 Identities=15% Similarity=0.102 Sum_probs=111.9
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
+++||-+..++.+..++..+. -...+.++|+.|+||||+|+.+.+.......+.. -.++.. .....|...-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pCg~C----~~C~~i~~g~~ 87 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA---NPCNDC----ENCREIDEGRF 87 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc---ccCCCC----HHHHHHhcCCC
Confidence 568999999999999996553 3456789999999999999998875221111100 001110 01111100000
Q ss_pred CCC--CCccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecch-HHhhccC
Q 002750 261 IDS--PSNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIR-EVAERSD 331 (885)
Q Consensus 261 ~~~--~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~ 331 (885)
.+. -........+++.+.+... ..++.-++|+|+++. .+....+...+..-...+++|++|.+. .+.....
T Consensus 88 ~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~ 167 (509)
T PRK14958 88 PDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVL 167 (509)
T ss_pred ceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHH
Confidence 000 0000111223332222211 134556899999974 467777888877666677777765433 3322222
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 002750 332 ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVV 385 (885)
Q Consensus 332 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (885)
.....+++.+++.++....+.+.+...... ...+....|++.++|.+.-+..
T Consensus 168 SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 168 SRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDALS 219 (509)
T ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHH
Confidence 445678999999999888877766443222 1245577889999998864433
No 83
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=1e-05 Score=90.67 Aligned_cols=198 Identities=13% Similarity=0.137 Sum_probs=113.4
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+...... |.... .+......+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHcCCC
Confidence 578999999999999886553 346788999999999999999987521111 21111 1111111111111110
Q ss_pred CCCC--CccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEe-cchHHhhccC
Q 002750 261 IDSP--SNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTT-RIREVAERSD 331 (885)
Q Consensus 261 ~~~~--~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~~~ 331 (885)
.... ........+++...+... ..+++-++|+|+++. ...+..+...+...+..+.+|++| ....+.....
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 0000 000011222222222111 122334699999974 467778888776655566666555 4333433223
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchH-HHHHHHh
Q 002750 332 ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPL-AIVVLGG 388 (885)
Q Consensus 332 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~ 388 (885)
.....+++.+++.++....+...+...... .-.+.+..+++.++|.+. |+..+-.
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 446789999999999999888876443221 124567889999999765 4444433
No 84
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.8e-05 Score=85.14 Aligned_cols=199 Identities=14% Similarity=0.082 Sum_probs=116.3
Q ss_pred ccccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeE----EEeccccccHHHHHH
Q 002750 178 AVEENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCA----WVSVSQEYRTEDLLM 253 (885)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~----wv~~~~~~~~~~~~~ 253 (885)
..-.+++|.+..++.+.+.+..+. -...+.++|+.|+||+|+|..+.+...-........ -.+.. ........+
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~ 93 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVAR 93 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHH
Confidence 334678999999999999886653 345688999999999999988876421111000000 00000 000001111
Q ss_pred HHHHHhcCCC---------CC---ccccccHHHHHHHHHHHh-----cCceEEEEEecCC--CHHHHHHHHhhCCCCCCC
Q 002750 254 RIINSFNIDS---------PS---NLEKMREEDLERCLYQSL-----QGYSYLVVIDDVW--QKETWESLKRAFPDSKNG 314 (885)
Q Consensus 254 ~il~~l~~~~---------~~---~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~--~~~~~~~l~~~l~~~~~g 314 (885)
.+.. -..+. .. ....+..+++. .+.+.+ .+.+.++|+||++ +......+...+..-..+
T Consensus 94 ~i~~-~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 94 RIAA-GAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHc-cCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111 00000 00 01223445533 333443 2456799999996 456677787777765566
Q ss_pred cEEEEEecchH-HhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 315 SRVILTTRIRE-VAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 315 s~iiiTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
+.+|++|.... +..........+.+.+++.++..+++....... . .+....++..++|.|.....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C---HHHHHHHHHHcCCCHHHHHHH
Confidence 66777766553 332334557789999999999999998764211 1 122367899999999865444
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.6e-05 Score=87.82 Aligned_cols=176 Identities=16% Similarity=0.189 Sum_probs=112.4
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc-------------------cccceeEEEe
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVK-------------------HKFACCAWVS 241 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~ 241 (885)
+++||.+..++.+...+..+. -...+.++|+.|+||||+|+.+.+..... +.+..++.++
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 568999988888888776543 23578899999999999999887531000 0111122232
Q ss_pred ccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCc
Q 002750 242 VSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGS 315 (885)
Q Consensus 242 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs 315 (885)
.+... ..+++...+... ..+++-++|+|+++. ......+...+..-...+
T Consensus 92 aas~~------------------------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 92 AASNT------------------------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred cccCC------------------------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 22111 122222222111 124555899999964 456778888887766677
Q ss_pred EEEEEec-chHHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 316 RVILTTR-IREVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 316 ~iiiTtR-~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
++|++|. ...+...+......+++.+++.++..+.+.+.+...... .-++....|++.++|.+..+
T Consensus 148 ~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 7776664 334443333556789999999999999998877544322 22566788999999887644
No 86
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.33 E-value=2.4e-05 Score=76.71 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=64.8
Q ss_pred CceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecch-HHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCC
Q 002750 285 GYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIR-EVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNA 361 (885)
Q Consensus 285 ~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 361 (885)
+.+-++|+||++. .+.++.+...+......+.+|++|++. .+..........+++.+++.++..+++.+. + .+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i~- 170 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-IS- 170 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-CC-
Confidence 4566899999975 456778888887656667777777643 222222344578999999999999998876 2 11
Q ss_pred ChhHHHHHHHHHHHcCCchHH
Q 002750 362 DEGLEKLGREMLEKCGGLPLA 382 (885)
Q Consensus 362 ~~~~~~~~~~i~~~~~g~Pla 382 (885)
++.+..|++.++|.|..
T Consensus 171 ----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 171 ----EEAAELLLALAGGSPGA 187 (188)
T ss_pred ----HHHHHHHHHHcCCCccc
Confidence 46688999999998853
No 87
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.32 E-value=8.8e-06 Score=82.57 Aligned_cols=171 Identities=15% Similarity=0.107 Sum_probs=95.3
Q ss_pred ccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCC
Q 002750 184 VGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDS 263 (885)
Q Consensus 184 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 263 (885)
.|........+..+.......+.+.|+|++|+|||+||+.+++... ... ....++++..... . +
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~----~---- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------A----F---- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------H----H----
Confidence 4555444333333322223456788999999999999999987621 111 2345555433110 0 0
Q ss_pred CCccccccHHHHHHHHHHHhcCceEEEEEecCCCHH--HHHHHHhhCCC-CCCCc-EEEEEecchHHhhccC-------C
Q 002750 264 PSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQKE--TWESLKRAFPD-SKNGS-RVILTTRIREVAERSD-------E 332 (885)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~~~~l~~~l~~-~~~gs-~iiiTtR~~~v~~~~~-------~ 332 (885)
... ...-++|+||++... .-+.+...+.. ...+. .+|+|++......... .
T Consensus 86 -----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 011 122378999996432 22233333322 12233 4667766433222110 1
Q ss_pred CCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 002750 333 RTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLL 390 (885)
Q Consensus 333 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (885)
....+++.++++++-..++...+....- .--++....+++.+.|++..+..+...+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~v--~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERGL--QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2368899999998877777765432222 1225677888888999998876655544
No 88
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.31 E-value=9e-08 Score=93.75 Aligned_cols=127 Identities=25% Similarity=0.342 Sum_probs=87.0
Q ss_pred CCccEEecCCC-cccCChhhccccccccccccccccccccCccCCCccCccccccccccCCc----ccCCCCeeEeeccc
Q 002750 641 QRLQTLDLSDT-LCGIPTEISKLTELRHLIGNFSGYLPIENLTNLRTLKYVSVESWNRLSPD----KLINLRELHIEDKE 715 (885)
Q Consensus 641 ~~L~~L~Ls~~-~~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~----~l~~L~~L~l~~~~ 715 (885)
+.|++||||+| +..+-.++.-+|+++.|.....+...++++..|..|..++++++....+. ++-|++.|.+..|.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 56778888875 44466677777788877444444445566777777777777776665543 56678888888885
Q ss_pred ccchhhccchhhhhccCCCceEEeeecCCccccccccCCCCCCcceEEEeee-cCCCCh
Q 002750 716 WTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK-IEKLPE 773 (885)
Q Consensus 716 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~lp~ 773 (885)
+.+. +++.++-+|..|+++.+.....+....++++|+|+.+.|.+| +..+|.
T Consensus 364 iE~L------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 364 IETL------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred Hhhh------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 4332 667777778888887666555666677888888888888887 444443
No 89
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.30 E-value=1.5e-06 Score=87.71 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=62.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc--ccHHHHHHHH-----HHHhcCCCCCccccc-cHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE--YRTEDLLMRI-----INSFNIDSPSNLEKM-REED 274 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i-----l~~l~~~~~~~~~~~-~~~~ 274 (885)
+...+.|+|++|+|||||++.++++.... +|+..+|+.+.+. .+..++++.+ +.+++.+.. ... -...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~---~~~~~~~~ 90 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPE---RHVQVAEM 90 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHH---HHHHHHHH
Confidence 45688899999999999999999985444 8999999997666 7888999888 333332111 111 1112
Q ss_pred HHHHHHHH-hcCceEEEEEecCCC
Q 002750 275 LERCLYQS-LQGYSYLVVIDDVWQ 297 (885)
Q Consensus 275 ~~~~l~~~-l~~~r~LlVlDdv~~ 297 (885)
........ -.++++++++|++..
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHH
Confidence 22222222 258999999999954
No 90
>PRK05642 DNA replication initiation factor; Validated
Probab=98.30 E-value=1.1e-05 Score=81.65 Aligned_cols=151 Identities=19% Similarity=0.267 Sum_probs=90.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
...+.|+|++|+|||.|++.+++.. ...-..++|++..+ +... .. .+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~-----------------~~----~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR-----------------GP----ELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh-----------------hH----HHHHhh
Confidence 3678999999999999999998752 22223467777432 1110 01 122222
Q ss_pred cCceEEEEEecCCCH---HHHHH-HHhhCCC-CCCCcEEEEEecchHHhhcc--------CCCCceeecCCCChhhHHHH
Q 002750 284 QGYSYLVVIDDVWQK---ETWES-LKRAFPD-SKNGSRVILTTRIREVAERS--------DERTHAYELPFLRPDESWKL 350 (885)
Q Consensus 284 ~~~r~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iiiTtR~~~v~~~~--------~~~~~~~~l~~L~~~e~~~l 350 (885)
.+-. +||+||+... ..|+. +...+.. ...|..+|+|++.....-.. -....++++.++++++..++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 6889999632 34544 3333322 22456788888754321111 02346789999999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 351 FCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 351 f~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
+..++....-. --+++..-|++++.|..-.+..+
T Consensus 175 l~~ka~~~~~~--l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 175 LQLRASRRGLH--LTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHH
Confidence 99766443222 22577788888888776655443
No 91
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.8e-05 Score=89.61 Aligned_cols=196 Identities=16% Similarity=0.137 Sum_probs=111.0
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
.+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+.+......... .-.++.. .....+...-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pcg~C----~~C~~i~~~~~ 87 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVT---ATPCGVC----SACLEIDSGRF 87 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---CCCCCCC----HHHHHHhcCCC
Confidence 468999999999998886543 335667999999999999999976521111000 0001100 00000000000
Q ss_pred CCC--CCccccccHHHHHHHHHHH----hcCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEEEecch-HHhhccC
Q 002750 261 IDS--PSNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRVILTTRIR-EVAERSD 331 (885)
Q Consensus 261 ~~~--~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~ 331 (885)
.+. .........+++.+.+... ..+++-++|+|+++.. .....+...+......+.+|++|.+. .+.....
T Consensus 88 ~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~ 167 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 167 (527)
T ss_pred CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHH
Confidence 000 0000011223332222211 1355669999999853 56777888887666667777666433 2221122
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchH-HHHHH
Q 002750 332 ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPL-AIVVL 386 (885)
Q Consensus 332 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 386 (885)
.....+++.+++.++....+.+.+...... ..++....|++.++|.+. |+..+
T Consensus 168 SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 168 SRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 335688999999999998888766433221 124567888999999775 44333
No 92
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.4e-08 Score=97.79 Aligned_cols=135 Identities=22% Similarity=0.149 Sum_probs=82.6
Q ss_pred CcccCCCCeeEeecccc-cchhhccchhhhhccCCCceEEeeecCCccccccccC-CCCCCcceEEEeeecCCCC----h
Q 002750 700 PDKLINLRELHIEDKEW-TREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPL-CDCPCLSDLRLRGKIEKLP----E 773 (885)
Q Consensus 700 l~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~lp----~ 773 (885)
+.+-.+|+.|+++.++- +..... --+.+++.|+.|+++|+.......-... .-.++|+.|+|+|+...+- .
T Consensus 230 iAkN~~L~~lnlsm~sG~t~n~~~---ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSGFTENALQ---LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred HhccccceeeccccccccchhHHH---HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence 44556677777777632 221111 2345678888888888864221111111 2246788899998732221 1
Q ss_pred hhhhcCCCccEEEEecc-CCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEee
Q 002750 774 DIHVILPNLECLSLEDS-NLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLL 837 (885)
Q Consensus 774 ~~~~~l~~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~ 837 (885)
.+..-+|+|..|||++| .++......+.+++.|++|.|+.|-.............|+|.+|++.
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEec
Confidence 22223689999999988 45555566778888999999887754333333345667888888887
No 93
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.25 E-value=5.9e-08 Score=103.41 Aligned_cols=77 Identities=29% Similarity=0.400 Sum_probs=47.6
Q ss_pred hccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCCCccccCCCCccEEecCC-CcccCChhhcc
Q 002750 583 FTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNLPPSIEKLQRLQTLDLSD-TLCGIPTEISK 661 (885)
Q Consensus 583 ~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~-~~~~lp~~i~~ 661 (885)
+..|-.|..|.|+.|. +. .+|..++++..|.||+|+.|++..+|..++.|+ |+.|-+++ ++..+|.+++.
T Consensus 94 ~~~f~~Le~liLy~n~------~r--~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~ 164 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNC------IR--TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGL 164 (722)
T ss_pred HHHHHHHHHHHHHhcc------ce--ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCccccc
Confidence 3444455556666666 65 666667777777777777777776766666555 66666666 35556666655
Q ss_pred ccccccc
Q 002750 662 LTELRHL 668 (885)
Q Consensus 662 L~~L~~L 668 (885)
++.|.+|
T Consensus 165 ~~tl~~l 171 (722)
T KOG0532|consen 165 LPTLAHL 171 (722)
T ss_pred chhHHHh
Confidence 5444444
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.24 E-value=1.8e-05 Score=92.26 Aligned_cols=169 Identities=19% Similarity=0.226 Sum_probs=96.9
Q ss_pred cccccccccHH---HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHH
Q 002750 181 ENVVGFEDDAN---KLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIIN 257 (885)
Q Consensus 181 ~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 257 (885)
++|+|.+..+. .+...+..+ +...+.++|++|+||||+|+.+++. ...+|. .+++.. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~-------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK-------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH--------
Confidence 46889887764 344444332 4566789999999999999999976 333431 111110 0000
Q ss_pred HhcCCCCCccccccHHHHHHHHHHHh--cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEE--ecchH--Hhhc
Q 002750 258 SFNIDSPSNLEKMREEDLERCLYQSL--QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILT--TRIRE--VAER 329 (885)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiT--tR~~~--v~~~ 329 (885)
+..+......+.+ .+++.++||||++. ...++.+...+. .|..++|+ |.+.. +...
T Consensus 92 -------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 92 -------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred -------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 0011111111111 24567999999964 455666665543 24545553 33321 2121
Q ss_pred cCCCCceeecCCCChhhHHHHHHHHHhcC-----CCCChhHHHHHHHHHHHcCCchH
Q 002750 330 SDERTHAYELPFLRPDESWKLFCEKAFQS-----FNADEGLEKLGREMLEKCGGLPL 381 (885)
Q Consensus 330 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~-----~~~~~~~~~~~~~i~~~~~g~Pl 381 (885)
.......+.+++++.++...++.+.+... ......-++....|++.+.|..-
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 22335679999999999999998866410 11112235667788888888654
No 95
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=4e-05 Score=83.97 Aligned_cols=180 Identities=17% Similarity=0.196 Sum_probs=106.8
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc------cccce-eEEEeccccccHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVK------HKFAC-CAWVSVSQEYRTEDLLM 253 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~------~~f~~-~~wv~~~~~~~~~~~~~ 253 (885)
++++|.+...+.+...+..+. -.+.+.++|++|+||||+|+.+.+..... ..|.. ++-+........ +...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~ 94 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIR 94 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHH
Confidence 567999999999999886542 34688899999999999999997652111 11211 111111110001 1111
Q ss_pred HHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEec-chHHhhcc
Q 002750 254 RIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTR-IREVAERS 330 (885)
Q Consensus 254 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR-~~~v~~~~ 330 (885)
.++.++... -..+++-++|+|+++. ...+..+...+......+.+|+++. ...+....
T Consensus 95 ~l~~~~~~~-------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 95 NLIDQVRIP-------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred HHHHHHhhc-------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 112111100 0123445899999864 3457777777655444556665553 33332222
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 331 DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 331 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
......+++.++++++....+...+...... .-++.+..+++.++|.+-.+
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 2345678999999999999888876543321 12567888888999876643
No 96
>PRK09087 hypothetical protein; Validated
Probab=98.23 E-value=1.8e-05 Score=79.36 Aligned_cols=138 Identities=14% Similarity=0.075 Sum_probs=85.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
.+.+.|+|++|+|||+|++.+++.. ...+++.. .+...++. .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~------------------------~~ 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAAN------------------------AA 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHH------------------------hh
Confidence 4678999999999999999888752 12244321 11111111 11
Q ss_pred cCceEEEEEecCCC----HHHHHHHHhhCCCCCCCcEEEEEecchH---------HhhccCCCCceeecCCCChhhHHHH
Q 002750 284 QGYSYLVVIDDVWQ----KETWESLKRAFPDSKNGSRVILTTRIRE---------VAERSDERTHAYELPFLRPDESWKL 350 (885)
Q Consensus 284 ~~~r~LlVlDdv~~----~~~~~~l~~~l~~~~~gs~iiiTtR~~~---------v~~~~~~~~~~~~l~~L~~~e~~~l 350 (885)
.+ -+|++||+.. .+.+-.+...+. ..|..||+|++... ....+ .....++++++++++-.++
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl-~~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRL-KAATVVEIGEPDDALLSQV 161 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHH-hCCceeecCCCCHHHHHHH
Confidence 11 1788899953 233333333332 23567899887432 22222 3457899999999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 002750 351 FCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVV 385 (885)
Q Consensus 351 f~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (885)
+.+++....-. --+++..-|++++.|..-++..
T Consensus 162 L~~~~~~~~~~--l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 162 IFKLFADRQLY--VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHHhhhhHHHHHH
Confidence 99988553222 2267788888888877766654
No 97
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=3.6e-05 Score=86.92 Aligned_cols=200 Identities=16% Similarity=0.169 Sum_probs=115.5
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
++++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.......... ..+......+.+.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 467898888888888775542 3467889999999999999999876321111100 01111111111111100
Q ss_pred CCCC--CccccccHHHHHHHHHHH-----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecc-hHHhhcc
Q 002750 261 IDSP--SNLEKMREEDLERCLYQS-----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRI-REVAERS 330 (885)
Q Consensus 261 ~~~~--~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~ 330 (885)
.... ........+++.. +.+. ..+++-++|+|+++. ...+..+...+..-.....+|++|.. ..+....
T Consensus 88 pDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 0000 0000111222221 2222 235566999999974 46677888877654445656665544 4443333
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCch-HHHHHHHhhhc
Q 002750 331 DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLP-LAIVVLGGLLS 391 (885)
Q Consensus 331 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l~ 391 (885)
......+++.+++.++....+...+...... ...+.+..|++.++|.+ .|+..+..++.
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3445688999999999999998866543321 22567888999999965 57776655543
No 98
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=4.3e-05 Score=87.26 Aligned_cols=200 Identities=15% Similarity=0.132 Sum_probs=116.8
Q ss_pred ccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccc--eeEEEeccccccHHHHHHHHHH
Q 002750 180 EENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFA--CCAWVSVSQEYRTEDLLMRIIN 257 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il~ 257 (885)
-++++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+......... ...+-.++.. .-.+.|..
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~i~~ 97 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQAIME 97 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHHHhc
Confidence 3578999999999999886553 345688999999999999999987632211110 0001111111 11111211
Q ss_pred HhcCCCC--CccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEe-cchHHhh
Q 002750 258 SFNIDSP--SNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTT-RIREVAE 328 (885)
Q Consensus 258 ~l~~~~~--~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~ 328 (885)
.-..+.. ........+++.+.+... ..+++-++|+|+++. ....+.+...+..-..++.+|++| ....+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 1100000 000112233333222111 123455799999964 356777888877666677776655 3333332
Q ss_pred ccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 329 RSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 329 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
.+......+++.+++.++....+.+.+...... .-.+....|++.++|.+.-+...
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 233456789999999999999998876443322 22467788999999988755443
No 99
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=4.7e-05 Score=87.06 Aligned_cols=198 Identities=12% Similarity=0.096 Sum_probs=112.2
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEe-ccccccHHHHHHHHHHHh
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVS-VSQEYRTEDLLMRIINSF 259 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~il~~l 259 (885)
.++||.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+........+...|.. +...+......+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 578999999898888876542 335588999999999999998876532211111111111 001111111111111100
Q ss_pred cCCC--CCccccccHHHHHHHHHHH----hcCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEEEe-cchHHhhcc
Q 002750 260 NIDS--PSNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRVILTT-RIREVAERS 330 (885)
Q Consensus 260 ~~~~--~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~~ 330 (885)
.... .........+++.+.+... ..+.+-++|+|+++.. ...+.+...+..-...+.+|++| +...+....
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 0000 0000111233443332222 2344557899999753 56778888877655566665554 444443333
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchH
Q 002750 331 DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPL 381 (885)
Q Consensus 331 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 381 (885)
......+++.+++.++....+.+.+...... ...+.+..|++.++|..-
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIARKAQGSMR 223 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHH
Confidence 3456789999999999988888766432211 125678889999999665
No 100
>PF14516 AAA_35: AAA-like domain
Probab=98.21 E-value=0.00026 Score=75.81 Aligned_cols=204 Identities=15% Similarity=0.161 Sum_probs=120.2
Q ss_pred ccccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc-----ccHHHHH
Q 002750 178 AVEENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE-----YRTEDLL 252 (885)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~ 252 (885)
.+.+..|.|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..... .+ .++++++... .+.+..+
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHH
Confidence 34456788886677777777543 3589999999999999999998763222 33 4567776542 2345455
Q ss_pred HHHH----HHhcCCCC-C-cc--ccccHHHHHHHHHHHh---cCceEEEEEecCCCH--------HHHHHHHhhCCCCC-
Q 002750 253 MRII----NSFNIDSP-S-NL--EKMREEDLERCLYQSL---QGYSYLVVIDDVWQK--------ETWESLKRAFPDSK- 312 (885)
Q Consensus 253 ~~il----~~l~~~~~-~-~~--~~~~~~~~~~~l~~~l---~~~r~LlVlDdv~~~--------~~~~~l~~~l~~~~- 312 (885)
+.++ +++..... . .. ...........+.+.+ .+++++|+||+++.. +-+..++.......
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 4444 44443321 0 00 0001223333444432 268999999999743 12233332222111
Q ss_pred ---CCcEEEEEecchHHhhcc------CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 313 ---NGSRVILTTRIREVAERS------DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 313 ---~gs~iiiTtR~~~v~~~~------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
...-.++...+....... -.....++|++++.+|...|....-... . ....++|...++|+|.-+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~---~---~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF---S---QEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC---C---HHHHHHHHHHHCCCHHHH
Confidence 112122222222111111 1123578999999999999988764221 1 233899999999999999
Q ss_pred HHHHhhhcC
Q 002750 384 VVLGGLLSK 392 (885)
Q Consensus 384 ~~~~~~l~~ 392 (885)
+.++..+.+
T Consensus 237 ~~~~~~l~~ 245 (331)
T PF14516_consen 237 QKACYLLVE 245 (331)
T ss_pred HHHHHHHHH
Confidence 999999973
No 101
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=4.2e-05 Score=87.77 Aligned_cols=190 Identities=15% Similarity=0.151 Sum_probs=110.7
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
..++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++........ ..+-.+.. .... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~--~~~~pC~~-------C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKT--DLLEPCQE-------CIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccC--CCCCchhH-------HHHh---hc
Confidence 568999999999999886553 34567799999999999999997652111100 00000000 0000 00
Q ss_pred CCCC----CccccccHHHHHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEE-EecchHHhh
Q 002750 261 IDSP----SNLEKMREEDLERCLYQSL-----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVIL-TTRIREVAE 328 (885)
Q Consensus 261 ~~~~----~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iii-TtR~~~v~~ 328 (885)
.... ........+++.. +.+.+ .+++-++|+|+++. ...+..+...+..-+..+.+|+ |++...+..
T Consensus 85 ~~~Dvieidaasn~~vd~IRe-Lie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRE-LIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0000 0000111222222 22222 35566899999974 4678888887776555555554 444444443
Q ss_pred ccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchH-HHHHH
Q 002750 329 RSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPL-AIVVL 386 (885)
Q Consensus 329 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 386 (885)
........+++.+++.++....+...+...... .-.+.+..|++.++|.+. |+..+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~--id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENIS--YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333456789999999999998888765433221 124567889999999775 44433
No 102
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.20 E-value=1.9e-05 Score=91.20 Aligned_cols=202 Identities=17% Similarity=0.146 Sum_probs=113.4
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccccc---ceeEEEecccc---ccHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKF---ACCAWVSVSQE---YRTEDLLMR 254 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~~~ 254 (885)
+.++|++..+..+...+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 46899999999888777433 45679999999999999999998763222222 12334443211 112221111
Q ss_pred ---------------HHHHhcCCCC---------------CccccccHHHHHHHHHHHhcCceEEEEEecCCCH--HHHH
Q 002750 255 ---------------IINSFNIDSP---------------SNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK--ETWE 302 (885)
Q Consensus 255 ---------------il~~l~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~ 302 (885)
.+...+.... ...+.++ ...+..+.+.+..+++.++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 1111111000 0112222 23466777888888888887766643 4577
Q ss_pred HHHhhCCCCCCCcEEEE--EecchH-HhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCc
Q 002750 303 SLKRAFPDSKNGSRVIL--TTRIRE-VAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGL 379 (885)
Q Consensus 303 ~l~~~l~~~~~gs~iii--TtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 379 (885)
.+...+....+...+++ ||++.. +..........+.+.+++.+|.+.++.+.+....... -++..+.|.+.+..-
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l--s~eal~~L~~ys~~g 388 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL--AAGVEELIARYTIEG 388 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHCCCcH
Confidence 77766665555554555 555332 1111223345678999999999999998764322111 133444455544433
Q ss_pred hHHHHHHH
Q 002750 380 PLAIVVLG 387 (885)
Q Consensus 380 Plai~~~~ 387 (885)
+.++..++
T Consensus 389 Rraln~L~ 396 (615)
T TIGR02903 389 RKAVNILA 396 (615)
T ss_pred HHHHHHHH
Confidence 44544443
No 103
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=7e-05 Score=83.64 Aligned_cols=196 Identities=15% Similarity=0.108 Sum_probs=113.0
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
++++|-+..++.+...+..+. -..+..++|+.|+||||+|+.+.+.......-+. -.+. .......+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~---~pC~----~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS---TPCD----TCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC---CCCc----ccHHHHHHhhcCC
Confidence 568999988899988886553 3456789999999999999988764211000000 0000 0000000000000
Q ss_pred CCC--CCccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecch-HHhhccC
Q 002750 261 IDS--PSNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIR-EVAERSD 331 (885)
Q Consensus 261 ~~~--~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~ 331 (885)
... .........+++.+.+... ..+++-++|+|+++. .+....+...+..-+..+++|++|.+. .+.....
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~ 165 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL 165 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH
Confidence 000 0000011123333333221 124456899999974 466777877777656677777777553 2222223
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 332 ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 332 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
.....+++.+++.++....+.+.+...... .-++.+..|++.++|.+.-+..+
T Consensus 166 SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 166 SRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 456789999999999999988776443322 22567889999999998655444
No 104
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=6.1e-05 Score=85.47 Aligned_cols=199 Identities=18% Similarity=0.146 Sum_probs=114.6
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
+++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+........+ +-.++.. ...+.+...-.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhhcccC
Confidence 578999999999999886542 345678999999999999999987522111100 0011111 11111111000
Q ss_pred CCCC----CccccccHHHH---HHHHHHH-hcCceEEEEEecCC--CHHHHHHHHhhCCCCCCCcEEEEEe-cchHHhhc
Q 002750 261 IDSP----SNLEKMREEDL---ERCLYQS-LQGYSYLVVIDDVW--QKETWESLKRAFPDSKNGSRVILTT-RIREVAER 329 (885)
Q Consensus 261 ~~~~----~~~~~~~~~~~---~~~l~~~-l~~~r~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~ 329 (885)
.... ........+++ ++.+... ..+++-++|+|+++ +......+...+..-.....+|++| ....+...
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 0000 00000112222 2222111 13455589999997 4567788888887766666666555 44444333
Q ss_pred cCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchH-HHHHHHhh
Q 002750 330 SDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPL-AIVVLGGL 389 (885)
Q Consensus 330 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~ 389 (885)
+......+++.+++.++..+.+.+.+...... .-.+....|++.++|.+. ++..+-.+
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33456789999999999998888766443322 124567788999999875 44444333
No 105
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=5.1e-08 Score=95.54 Aligned_cols=160 Identities=25% Similarity=0.253 Sum_probs=112.6
Q ss_pred CcccCCCCeeEeecccccchhhccchhhhhccCCCceEEeeecCCcc-ccccccCCCCCCcceEEEeeecC---CCChhh
Q 002750 700 PDKLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERS-FDLLQPLCDCPCLSDLRLRGKIE---KLPEDI 775 (885)
Q Consensus 700 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~---~lp~~~ 775 (885)
++.+.+|+.|.+.++++.+... ..+.+-++|+.++++.+++-. ...--.+.+++.|.+|+|+.+.. .+--.+
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~----~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V 281 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIV----NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV 281 (419)
T ss_pred HHHHHhhhhccccccccCcHHH----HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH
Confidence 5678899999999998765433 556777899999998776522 22223457889999999998732 222223
Q ss_pred hhcCCCccEEEEeccC--CCCCChhHH-hcCcCCCceEeeccc-cCCeEEeecCCCCcccceeEee-cCCCc-ceEEcCC
Q 002750 776 HVILPNLECLSLEDSN--LDDDPMPEL-EKMSNLVILDLSYDS-YSGKKLFCTAKGFPRLEILQLL-VDELE-EWQVEEG 849 (885)
Q Consensus 776 ~~~l~~L~~L~L~~~~--l~~~~~~~l-~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~~L~~L~l~-~~~l~-~l~~~~~ 849 (885)
.+.-++|+.|+|++|. +-......+ ..+|+|..|+|+.|. ++. .....+..|+.|++|.++ |-.+- .--....
T Consensus 282 ~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~ 360 (419)
T KOG2120|consen 282 AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELN 360 (419)
T ss_pred hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeec
Confidence 3345899999999984 333445555 669999999999764 333 333334579999999999 65442 2223456
Q ss_pred ccccccceeeccccc
Q 002750 850 AMPRLRGLRIPEHLK 864 (885)
Q Consensus 850 ~~~~L~~L~l~~c~~ 864 (885)
.+|.|.+|++.+|-.
T Consensus 361 s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 361 SKPSLVYLDVFGCVS 375 (419)
T ss_pred cCcceEEEEeccccC
Confidence 899999999999876
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=5.2e-05 Score=89.59 Aligned_cols=192 Identities=16% Similarity=0.118 Sum_probs=112.8
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.......... -.|+.+ ...+.|... .
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~---~pCg~C----~sC~~~~~g-~ 85 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS---TPCGEC----DSCVALAPG-G 85 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC---CCCccc----HHHHHHHcC-C
Confidence 468999999999999886543 2356789999999999999999876321111100 001110 001111100 0
Q ss_pred CCCC-----CccccccHHHHHHHHHH----HhcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecc-hHHhh
Q 002750 261 IDSP-----SNLEKMREEDLERCLYQ----SLQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRI-REVAE 328 (885)
Q Consensus 261 ~~~~-----~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~ 328 (885)
.... ........+++.+...+ -..++.-++|||+++. ...+..|+..+..-...+.+|++|.+ ..+..
T Consensus 86 ~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 86 PGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 0000 00011122333221111 1234555889999974 46778888888876667777766643 33443
Q ss_pred ccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 329 RSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 329 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
.+......|++..++.++..+++.+.+...... .-.+....|++.++|.+..+
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 334557889999999999998888765332221 12456678899999988543
No 107
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.18 E-value=3.9e-05 Score=85.27 Aligned_cols=167 Identities=13% Similarity=0.085 Sum_probs=99.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
..-+.|+|..|+|||+|++.+.+.......-..+++++ .+++...+...+.... .....+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~----------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH----------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh----------hHHHHHHHHh
Confidence 45688999999999999999988521111112345554 3455566665553210 1112233333
Q ss_pred cCceEEEEEecCCCH---HHH-HHHHhhCCC-CCCCcEEEEEecchH--H-------hhccCCCCceeecCCCChhhHHH
Q 002750 284 QGYSYLVVIDDVWQK---ETW-ESLKRAFPD-SKNGSRVILTTRIRE--V-------AERSDERTHAYELPFLRPDESWK 349 (885)
Q Consensus 284 ~~~r~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iiiTtR~~~--v-------~~~~~~~~~~~~l~~L~~~e~~~ 349 (885)
+. .-+||+||+... ..+ +.+...+.. ...|..||+|+.... . .... ....++.+.+++.++..+
T Consensus 205 ~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~-~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 205 CQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRF-NMGLSIAIQKLDNKTATA 282 (450)
T ss_pred cc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHH-hCCceeccCCcCHHHHHH
Confidence 33 238889999642 222 333333321 123456888876432 1 1111 235678899999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHHh
Q 002750 350 LFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGG 388 (885)
Q Consensus 350 lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 388 (885)
++.+++....-...--+++..-|++.++|.|-.+.-+..
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 999988543211123367889999999999987765543
No 108
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.17 E-value=1.9e-06 Score=95.81 Aligned_cols=78 Identities=33% Similarity=0.525 Sum_probs=57.3
Q ss_pred hccCceeEEEeccccccccccccccCCCchhhcccc-cccEEEecCCCCCCCCccccCCCCccEEecCCC-cccCChhhc
Q 002750 583 FTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLI-HLKYLRLRNSPIDNLPPSIEKLQRLQTLDLSDT-LCGIPTEIS 660 (885)
Q Consensus 583 ~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~~-~~~lp~~i~ 660 (885)
...+..+..|++.++. +. .+|..++.+. +|++|++++|.+..+|..++.+++|+.|++++| +..+|...+
T Consensus 112 ~~~~~~l~~L~l~~n~------i~--~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~ 183 (394)
T COG4886 112 LLELTNLTSLDLDNNN------IT--DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS 183 (394)
T ss_pred hhcccceeEEecCCcc------cc--cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh
Confidence 3455678888888887 77 7777777664 888888888888888777788888888888874 666776655
Q ss_pred cccccccc
Q 002750 661 KLTELRHL 668 (885)
Q Consensus 661 ~L~~L~~L 668 (885)
.+++|+.|
T Consensus 184 ~~~~L~~L 191 (394)
T COG4886 184 NLSNLNNL 191 (394)
T ss_pred hhhhhhhe
Confidence 66666655
No 109
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.17 E-value=8.6e-05 Score=75.48 Aligned_cols=203 Identities=17% Similarity=0.183 Sum_probs=116.5
Q ss_pred cccccccccc---ccHHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHhcCcccccc----cceeEEEeccccccHH
Q 002750 178 AVEENVVGFE---DDANKLLAHLLKE-DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHK----FACCAWVSVSQEYRTE 249 (885)
Q Consensus 178 ~~~~~~vGr~---~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~ 249 (885)
...+.+||-. ..++++.+++..+ ..+.+-+.|+|.+|.|||++++++.+..-.... --.++.|.....++..
T Consensus 31 i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 31 IRADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred HhcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 3455677743 3345555555443 345678999999999999999999865211111 1136677788889999
Q ss_pred HHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcC-ceEEEEEecCCCH-----HHHHHH---HhhCCCCCCCcEEEEE
Q 002750 250 DLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQG-YSYLVVIDDVWQK-----ETWESL---KRAFPDSKNGSRVILT 320 (885)
Q Consensus 250 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~-----~~~~~l---~~~l~~~~~gs~iiiT 320 (885)
.+...|+.+++.+.... .............++. +-=+||+|++.+. ..-..+ ...+.+.-.=+-|.+-
T Consensus 111 ~~Y~~IL~~lgaP~~~~---~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPR---DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred HHHHHHHHHhCcccCCC---CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 99999999999876522 1223333333334422 1228999999763 122222 2333332234555566
Q ss_pred ecchHHhhcc----CCCCceeecCCCChh-hHHHHHHHHHhc--CCCC-ChhHHHHHHHHHHHcCCchHHH
Q 002750 321 TRIREVAERS----DERTHAYELPFLRPD-ESWKLFCEKAFQ--SFNA-DEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 321 tR~~~v~~~~----~~~~~~~~l~~L~~~-e~~~lf~~~~~~--~~~~-~~~~~~~~~~i~~~~~g~Plai 383 (885)
|+..--+-.. .....++.++....+ +...|+...... -..+ .-..++++..|...++|+.--+
T Consensus 188 t~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 188 TREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred cHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 6543222111 123456666666554 444454332211 1111 2234688999999999987544
No 110
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.15 E-value=2.6e-06 Score=94.70 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=23.1
Q ss_pred ccCCCCCCcceEEEeee-cCCCChhhhhcCCCccEEEEeccCCCC
Q 002750 751 QPLCDCPCLSDLRLRGK-IEKLPEDIHVILPNLECLSLEDSNLDD 794 (885)
Q Consensus 751 ~~l~~~~~L~~L~l~~~-~~~lp~~~~~~l~~L~~L~L~~~~l~~ 794 (885)
..+..+++++.|++++| +..++. +.. +.+++.|+++++.+..
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~-~~~-~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS-LGS-LTNLRELDLSGNSLSN 291 (394)
T ss_pred chhccccccceecccccccccccc-ccc-cCccCEEeccCccccc
Confidence 33445555666666665 344443 333 3666666666666553
No 111
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=0.00011 Score=82.19 Aligned_cols=179 Identities=17% Similarity=0.134 Sum_probs=108.8
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc-c------------------ccceeEEEe
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVK-H------------------KFACCAWVS 241 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~------------------~f~~~~wv~ 241 (885)
..++|.+..++.+..++..+. -.....++|+.|+||||+|+.++...... . .|...+++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 468899999999999886543 34566789999999999999987652110 0 011111111
Q ss_pred ccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHH-----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCC
Q 002750 242 VSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQS-----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNG 314 (885)
Q Consensus 242 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~-----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~g 314 (885)
.+. ....+++. .+.+. ..+++-++|+|+++. ....+.+...+......
T Consensus 95 aas------------------------~~gvd~ir-~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 95 AAS------------------------NRGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred Ccc------------------------CCCHHHHH-HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 110 01111111 12222 135566999999974 35677777777765555
Q ss_pred cEEEEEe-cchHHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 002750 315 SRVILTT-RIREVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLG 387 (885)
Q Consensus 315 s~iiiTt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (885)
..+|++| +...+..........+.+.+++.++....+...+...... .-.+.+..|++.++|.+..+....
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6566555 4333332222345678999999999998888876443322 124667788899999776554443
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=9.1e-05 Score=85.59 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=115.0
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
+++||.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+......... ....+......+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 578999999999988886542 345678999999999999999986521111000 0011111222233322111
Q ss_pred CCCC--CccccccHHHHHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecc-hHHhhcc
Q 002750 261 IDSP--SNLEKMREEDLERCLYQSL-----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRI-REVAERS 330 (885)
Q Consensus 261 ~~~~--~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~ 330 (885)
.... ........+++.+. .+.+ .+++-++|+|+++. .+..+.+...+......+.+|+++.. ..+....
T Consensus 89 ~d~~~i~~~~~~~vd~ir~i-i~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAREI-IERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHHHHH-HHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 1000 00011223333222 2221 24566899999964 45677787777665556667666543 3333322
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 331 DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 331 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
......+++..++.++....+...+...... .-.+.+..|++.++|.+..+...
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2345678899999999998888776443322 12567889999999988755443
No 113
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.14 E-value=3.5e-05 Score=78.11 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=97.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHH
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 281 (885)
...+-+.+||++|+||||||+.+........ ..||..+....-..-.++++++... ..
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~------------------~~ 217 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN------------------EK 217 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH------------------HH
Confidence 3678888999999999999999998732222 4567766544444444444443221 11
Q ss_pred HhcCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEE--EecchHHhhc--cCCCCceeecCCCChhhHHHHHHHHH
Q 002750 282 SLQGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRVIL--TTRIREVAER--SDERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 282 ~l~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iii--TtR~~~v~~~--~~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
.+.++|.+|++|+|..- .+-+ .+||.-.+|.-++| ||.+....-. .-....++-|++|..++...++.+..
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 24578889999999532 2222 23666667887776 5554432111 12456789999999999999998843
Q ss_pred h---cCCC---C--C---hhHHHHHHHHHHHcCCchH
Q 002750 356 F---QSFN---A--D---EGLEKLGREMLEKCGGLPL 381 (885)
Q Consensus 356 ~---~~~~---~--~---~~~~~~~~~i~~~~~g~Pl 381 (885)
- .... + . .....+.+-++..|+|-..
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 2 2211 1 1 1234566677778888654
No 114
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=9.8e-05 Score=82.11 Aligned_cols=191 Identities=17% Similarity=0.151 Sum_probs=107.1
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccccc-ceeEEEeccccccHHHHHHHHHHHh
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKF-ACCAWVSVSQEYRTEDLLMRIINSF 259 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l 259 (885)
++++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+.......- +... +.... ....+-..-
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~---c~~c~----~C~~i~~~~ 88 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP---CNQCA----SCKEISSGT 88 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC---CcccH----HHHHHhcCC
Confidence 578999999999998886542 24667899999999999999887642111000 0000 00000 000000000
Q ss_pred cCCC--CCccccccHHHHHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEec-chHHhhc
Q 002750 260 NIDS--PSNLEKMREEDLERCLYQSL-----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTR-IREVAER 329 (885)
Q Consensus 260 ~~~~--~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR-~~~v~~~ 329 (885)
.... -........+++.. +.+.+ .+.+-++|+|+++. .+..+.+...+.....+..+|++|. ...+...
T Consensus 89 ~~d~~~i~g~~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~t 167 (451)
T PRK06305 89 SLDVLEIDGASHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGT 167 (451)
T ss_pred CCceEEeeccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchH
Confidence 0000 00000011122211 11111 24566899999864 3556777777776555666776664 3333322
Q ss_pred cCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHH
Q 002750 330 SDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLA 382 (885)
Q Consensus 330 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 382 (885)
.......+++.++++++....+...+..... ..-++.+..|++.++|.+.-
T Consensus 168 I~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 168 ILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRD 218 (451)
T ss_pred HHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 2344678999999999999888876643221 12256788899999997653
No 115
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=9.5e-05 Score=85.14 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=111.4
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc---------------------cccceeEE
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVK---------------------HKFACCAW 239 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~f~~~~w 239 (885)
++++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+....... .+|+ +..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEE
Confidence 578999999999999886542 34568899999999999998877642110 1122 111
Q ss_pred EeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCC
Q 002750 240 VSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKN 313 (885)
Q Consensus 240 v~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~ 313 (885)
++.+... ..+++...+.+. ..+++=++|+|+++. ...++.+...+..-..
T Consensus 95 ld~~~~~------------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 95 LDAASNN------------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred ecccccC------------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 2211111 122222222111 123445889999874 4678888888877666
Q ss_pred CcEEEEEe-cchHHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 314 GSRVILTT-RIREVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 314 gs~iiiTt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
++.+|++| ....+..........+++.+++.++....+...+....-. .-.+.+..|++.++|..--+
T Consensus 151 ~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 151 YAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 67666655 4444444334556789999999999999888766443221 22456788999999977544
No 116
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.10 E-value=1.3e-05 Score=87.40 Aligned_cols=175 Identities=16% Similarity=0.216 Sum_probs=100.4
Q ss_pred cccccccccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc
Q 002750 179 VEENVVGFEDDANKLLAHLLKE-----------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR 247 (885)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (885)
..+++.|++..++++.+.+... -...+-+.|+|++|+|||++|+.+++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 3457899999999998877422 023456889999999999999999987 33333 22211
Q ss_pred HHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHH-hcCceEEEEEecCCCH-------------H---HHHHHHhhCCC
Q 002750 248 TEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQS-LQGYSYLVVIDDVWQK-------------E---TWESLKRAFPD 310 (885)
Q Consensus 248 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~-------------~---~~~~l~~~l~~ 310 (885)
..+. ..... ........+.+. -...+.+|++||++.. . .+..+...+..
T Consensus 190 -~~l~----~~~~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 190 -SELV----RKYIG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred -HHHH----HHhhh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 1111 11000 001111122222 2345679999998642 1 12233333321
Q ss_pred --CCCCcEEEEEecchHHhhcc----CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCch
Q 002750 311 --SKNGSRVILTTRIREVAERS----DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLP 380 (885)
Q Consensus 311 --~~~gs~iiiTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (885)
...+..||.||......... +.-...+.+...+.++..++|..+......... .-...+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 23467788888754322111 011356889999999999999987754432211 11456677776654
No 117
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=2.3e-06 Score=66.12 Aligned_cols=57 Identities=26% Similarity=0.433 Sum_probs=48.5
Q ss_pred ceeEEEeccccccccccccccCCCch-hhcccccccEEEecCCCCCCCC-ccccCCCCccEEecCCC
Q 002750 587 SLLRVYDAEVVNRFRTGIFSEFPLPV-EIGQLIHLKYLRLRNSPIDNLP-PSIEKLQRLQTLDLSDT 651 (885)
Q Consensus 587 ~~Lr~L~L~~~~~~~~~~l~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~Ls~~ 651 (885)
++|++|++++|. +. .+|. .+.++++|++|++++|.++.+| ..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~------l~--~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK------LT--EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST------ES--EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCC------CC--ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 468899999998 87 7775 5788999999999999999885 47799999999999885
No 118
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.09 E-value=9.9e-05 Score=77.00 Aligned_cols=158 Identities=16% Similarity=0.170 Sum_probs=85.9
Q ss_pred cccccccccHHHHHHHHh---c-------C---CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc
Q 002750 181 ENVVGFEDDANKLLAHLL---K-------E---DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR 247 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~---~-------~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (885)
..++|.+..++++.++.. . + .....-+.++|++|+||||+|+.+++.....+......|+.++.
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR--- 98 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH---
Confidence 357887777777655422 1 0 01123578999999999999977765421111111112444332
Q ss_pred HHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCC-----------HHHHHHHHhhCCCCCCCcE
Q 002750 248 TEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQ-----------KETWESLKRAFPDSKNGSR 316 (885)
Q Consensus 248 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~-----------~~~~~~l~~~l~~~~~gs~ 316 (885)
.+ ++..+.... .......+.+. ..-+|+||++.. .+.++.+...+.....+.+
T Consensus 99 -~~----l~~~~~g~~--------~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 99 -DD----LVGQYIGHT--------APKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred -HH----HhHhhcccc--------hHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 12 222221111 11122222222 224889999862 2335566666665556677
Q ss_pred EEEEecchHHhhccCC-------CCceeecCCCChhhHHHHHHHHHhc
Q 002750 317 VILTTRIREVAERSDE-------RTHAYELPFLRPDESWKLFCEKAFQ 357 (885)
Q Consensus 317 iiiTtR~~~v~~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~ 357 (885)
||+++........... -...+++++++.+|..+++...+..
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 7777654332211101 1357899999999999999887643
No 119
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.07 E-value=5e-06 Score=87.33 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccc--cHHHHHHHHHHHhcCCCCCccc
Q 002750 191 NKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEY--RTEDLLMRIINSFNIDSPSNLE 268 (885)
Q Consensus 191 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~ 268 (885)
-++++.+..-. +-.-..|+|++|+||||||+.+|++.... +|+.++||.+.+.. ...++++.+...+-........
T Consensus 157 ~rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~ 234 (416)
T PRK09376 157 TRIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPA 234 (416)
T ss_pred eeeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCH
Confidence 35566665432 34567899999999999999999985443 89999999998876 6667777775322111110000
Q ss_pred --ccc-HHHHHHHHHHH-hcCceEEEEEecCCC
Q 002750 269 --KMR-EEDLERCLYQS-LQGYSYLVVIDDVWQ 297 (885)
Q Consensus 269 --~~~-~~~~~~~l~~~-l~~~r~LlVlDdv~~ 297 (885)
... .......-... ..+++++|++|++..
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 000 11111111222 268999999999954
No 120
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00018 Score=81.94 Aligned_cols=196 Identities=12% Similarity=0.114 Sum_probs=114.6
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
.+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+++......... ...++...+- +.+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~C----~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSSC----KSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchHH----HHHHcCCC
Confidence 578999999999999886653 346788999999999999999987632111100 0011111111 11111000
Q ss_pred CCC--CCccccccHHHHHHHHHH----HhcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecc-hHHhhccC
Q 002750 261 IDS--PSNLEKMREEDLERCLYQ----SLQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRI-REVAERSD 331 (885)
Q Consensus 261 ~~~--~~~~~~~~~~~~~~~l~~----~l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~~ 331 (885)
... -........+++...... -..+++-++|+|+++. ...+..+...+..-...+.+|++|.. ..+.....
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 000 000001122333322211 1234556899999964 45678888887765666767666543 33333223
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 332 ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 332 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
.....+++.+++.++....+...+...... .-++.+..|++.++|.+..+...
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 445678999999999998888876443322 22567788999999988644333
No 121
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.04 E-value=4.2e-05 Score=79.18 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=83.7
Q ss_pred ccccccccHHHHHHHHhc-------------CCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccH
Q 002750 182 NVVGFEDDANKLLAHLLK-------------EDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRT 248 (885)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (885)
.++|.+..++++.+.... ..+...-+.++|++|+||||+|+.+++.....+.-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478888877776544321 023456688999999999999999976411011111112233221
Q ss_pred HHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCC----------HHHHHHHHhhCCCCCCCcEEE
Q 002750 249 EDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQ----------KETWESLKRAFPDSKNGSRVI 318 (885)
Q Consensus 249 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~----------~~~~~~l~~~l~~~~~gs~ii 318 (885)
.++ ....-.. ........+.+. .+ -+|++|+++. .+..+.+...+........+|
T Consensus 83 ~~l----~~~~~g~--------~~~~~~~~~~~a-~~--~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 83 ADL----VGEYIGH--------TAQKTREVIKKA-LG--GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred HHh----hhhhccc--------hHHHHHHHHHhc-cC--CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 111 1111000 111122222222 22 3889999974 234455555555544445566
Q ss_pred EEecchHHhh------ccCCC-CceeecCCCChhhHHHHHHHHHhc
Q 002750 319 LTTRIREVAE------RSDER-THAYELPFLRPDESWKLFCEKAFQ 357 (885)
Q Consensus 319 iTtR~~~v~~------~~~~~-~~~~~l~~L~~~e~~~lf~~~~~~ 357 (885)
+++...+... ..... ...+.+++++.++..+++.+.+..
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred ecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 6655433211 11112 356889999999999999887743
No 122
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.03 E-value=1.5e-06 Score=67.18 Aligned_cols=60 Identities=30% Similarity=0.434 Sum_probs=35.1
Q ss_pred CCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeecCC
Q 002750 780 PNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVDE 840 (885)
Q Consensus 780 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 840 (885)
|+|+.|++++|++...+...|.++++|+.|++++|.+... ....+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 3566666666666555555666666666666666666532 22334556666666666554
No 123
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.03 E-value=5.8e-05 Score=80.98 Aligned_cols=148 Identities=17% Similarity=0.203 Sum_probs=86.7
Q ss_pred ccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHh
Q 002750 180 EENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSF 259 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 259 (885)
-++++|.+...+.+..++..+. ...++.++|++|+||||+|+.+++.. ... ...++.+. ... +..+..+..+
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~-~~i~~~l~~~ 91 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRI-DFVRNRLTRF 91 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccH-HHHHHHHHHH
Confidence 3578999999999999886542 45677789999999999999998762 221 23444443 111 1111111111
Q ss_pred cCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH---HHHHHHHhhCCCCCCCcEEEEEecchHH-hhccCCCCc
Q 002750 260 NIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK---ETWESLKRAFPDSKNGSRVILTTRIREV-AERSDERTH 335 (885)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iiiTtR~~~v-~~~~~~~~~ 335 (885)
.... .+.+.+-++|+||++.. +....+...+.....++++|+||..... .........
T Consensus 92 ~~~~------------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 92 ASTV------------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHhh------------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 0000 01133457899999744 3334444445555567788888864431 111123345
Q ss_pred eeecCCCChhhHHHHHHH
Q 002750 336 AYELPFLRPDESWKLFCE 353 (885)
Q Consensus 336 ~~~l~~L~~~e~~~lf~~ 353 (885)
.+.+...+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677777777777666543
No 124
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.02 E-value=0.00023 Score=70.40 Aligned_cols=175 Identities=20% Similarity=0.163 Sum_probs=102.0
Q ss_pred ccccccccccHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHH
Q 002750 180 EENVVGFEDDANKLLAHLLKE---DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRII 256 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 256 (885)
-.+|||.+..++++.-.+... +..+--|.++|++|.||||||.-+++.. ...+ -++-+....-..-+..++
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em--gvn~----k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL--GVNL----KITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh--cCCe----EecccccccChhhHHHHH
Confidence 357999999888887777532 4567789999999999999999999873 2222 112111111112222222
Q ss_pred HHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH--HHHHHHHhhCC--------CCCCCcEE---------
Q 002750 257 NSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK--ETWESLKRAFP--------DSKNGSRV--------- 317 (885)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~l~~~l~--------~~~~gs~i--------- 317 (885)
..+. .. =++.+|.+... ..-+-+..++. ..++++|.
T Consensus 99 t~Le------------------------~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 99 TNLE------------------------EG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred hcCC------------------------cC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 2221 11 15667777532 11111111111 12333333
Q ss_pred --EEEecchHHhhccCCC-CceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHH
Q 002750 318 --ILTTRIREVAERSDER-THAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLG 387 (885)
Q Consensus 318 --iiTtR~~~v~~~~~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (885)
=-|||.-.+..-.... ..+.+++--+.+|-.++..+.+..-.. +.-++.+.+|+++..|-|.-..-+-
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHH
Confidence 2477755443333111 345678888999999999887743322 2236778999999999997554433
No 125
>CHL00181 cbbX CbbX; Provisional
Probab=98.02 E-value=0.00014 Score=75.73 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=86.5
Q ss_pred cccccccccHHHHHHHHh---c-------C---CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc
Q 002750 181 ENVVGFEDDANKLLAHLL---K-------E---DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR 247 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~---~-------~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (885)
..++|.+..+++|.++.. - + ......+.++|++|+||||+|+.+++.....+.-....|+.++.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~--- 99 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR--- 99 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH---
Confidence 357887777776554431 1 0 11234578999999999999999976421111111112444441
Q ss_pred HHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCC-----------HHHHHHHHhhCCCCCCCcE
Q 002750 248 TEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQ-----------KETWESLKRAFPDSKNGSR 316 (885)
Q Consensus 248 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~-----------~~~~~~l~~~l~~~~~gs~ 316 (885)
.+ +........ .......+.+. .+ -+|++|++.. .+..+.+...+.+...+.+
T Consensus 100 -~~----l~~~~~g~~--------~~~~~~~l~~a-~g--gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~ 163 (287)
T CHL00181 100 -DD----LVGQYIGHT--------APKTKEVLKKA-MG--GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLV 163 (287)
T ss_pred -HH----HHHHHhccc--------hHHHHHHHHHc-cC--CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 12 222221111 11112222222 22 3899999863 2334555555655555677
Q ss_pred EEEEecchHHhhcc-------CCCCceeecCCCChhhHHHHHHHHHhc
Q 002750 317 VILTTRIREVAERS-------DERTHAYELPFLRPDESWKLFCEKAFQ 357 (885)
Q Consensus 317 iiiTtR~~~v~~~~-------~~~~~~~~l~~L~~~e~~~lf~~~~~~ 357 (885)
||+++....+.... .--...+.+++++.+|..+++...+..
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 77777644332111 112457899999999999998887643
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00026 Score=81.58 Aligned_cols=198 Identities=15% Similarity=0.102 Sum_probs=114.2
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
..++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++..... ....... ..+......+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~~----~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPTP----EPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCCC----CCCcccHHHHHHhcCCC
Confidence 468899999999988886543 23567899999999999999998763211 1110000 11111222222222111
Q ss_pred CCCC--CccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEec-chHHhhccC
Q 002750 261 IDSP--SNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTR-IREVAERSD 331 (885)
Q Consensus 261 ~~~~--~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR-~~~v~~~~~ 331 (885)
.+.. ........+++.+.+... ..+++-++|+|+++. .+.+..+...+..-.....+|++|. ...+.....
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 1000 000112233333333221 124556899999974 4677888888876555565655554 333332233
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 332 ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 332 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
.....+++..++.++....+...+...... .-.+.+..|++.++|.+..+..+
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 456778899999999888887766432221 11456788999999988655443
No 127
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.0002 Score=82.34 Aligned_cols=198 Identities=14% Similarity=0.144 Sum_probs=111.5
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
++++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+........+. ..+........|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCCC
Confidence 578999999999999886542 3456789999999999999998765211111000 00000011111100000
Q ss_pred CCC--CCccccccHHHHHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEe-cchHHhhcc
Q 002750 261 IDS--PSNLEKMREEDLERCLYQSL-----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTT-RIREVAERS 330 (885)
Q Consensus 261 ~~~--~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~~ 330 (885)
... .........+++.+ +.+.+ .+++-++|+|+++. ......+...+..-...+.+|++| ....+....
T Consensus 88 ~d~~eid~~s~~~v~~ir~-l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDDIRE-LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHHHHH-HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 000 00000111222222 22221 24445899999974 456777888777655566666555 444444333
Q ss_pred CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchH-HHHHHHhh
Q 002750 331 DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPL-AIVVLGGL 389 (885)
Q Consensus 331 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~~~~ 389 (885)
......+++.+++.++....+...+...... .-.+....|++.++|..- |+..+-.+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3456788999999999888887765433221 225667889999998664 44444333
No 128
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.97 E-value=0.00037 Score=71.81 Aligned_cols=172 Identities=18% Similarity=0.223 Sum_probs=109.4
Q ss_pred cccccccccccHHHHHHHHhcCCC-CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHH
Q 002750 179 VEENVVGFEDDANKLLAHLLKEDP-RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIIN 257 (885)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~~~-~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 257 (885)
.++.+.+|+.++..+..++...+. -+..|.|+|.+|.|||.+.+.+++.. . -..+|+++-+.++...++..|+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHHH
Confidence 356788999999999998866554 34566999999999999999999874 1 23589999999999999999999
Q ss_pred HhcC-CCCCcc-cc--ccHHHHHHHHHHH--h--cCceEEEEEecCCCHHHHHHHH-hhC---CC-CCCCcEEEEEecch
Q 002750 258 SFNI-DSPSNL-EK--MREEDLERCLYQS--L--QGYSYLVVIDDVWQKETWESLK-RAF---PD-SKNGSRVILTTRIR 324 (885)
Q Consensus 258 ~l~~-~~~~~~-~~--~~~~~~~~~l~~~--l--~~~r~LlVlDdv~~~~~~~~l~-~~l---~~-~~~gs~iiiTtR~~ 324 (885)
+.+. +.+... .. ......+..+.++ . +++.++||||+++...+.+.+. +.+ .. .....-+|+++-..
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 9863 222111 11 2233444445542 2 2468999999998654433321 111 10 11123344444322
Q ss_pred HHhhcc----CCCCceeecCCCChhhHHHHHHHHH
Q 002750 325 EVAERS----DERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 325 ~v~~~~----~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
...... .....++..+.-+.+|...++.+.-
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 222111 1233456777888999988886643
No 129
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.96 E-value=6.9e-05 Score=74.82 Aligned_cols=185 Identities=16% Similarity=0.144 Sum_probs=115.6
Q ss_pred cccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeE-EEeccccccHHHHHHHHHH
Q 002750 179 VEENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCA-WVSVSQEYRTEDLLMRIIN 257 (885)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~il~ 257 (885)
.-++++|-+..++.+.+.+.. ...++...+||+|.|||+-|..+.....-..-|.+.+ =.++|..-.+. +.+.=+.
T Consensus 34 t~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Kik 110 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKIK 110 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhhc
Confidence 345789999999999998876 3578899999999999999998887643345555433 23444322211 0000000
Q ss_pred HhcCCCCCccccccHHHHHHHHHHHh--cCce-EEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEEEecch-HHhhccC
Q 002750 258 SFNIDSPSNLEKMREEDLERCLYQSL--QGYS-YLVVIDDVWQK--ETWESLKRAFPDSKNGSRVILTTRIR-EVAERSD 331 (885)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~l~~~l--~~~r-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~ 331 (885)
+...+.....+.. ..++ -.+|||+++.. +.|..+...+.+....++.|+.+..- .+.....
T Consensus 111 -------------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 111 -------------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred -------------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0000000000000 0122 38899999864 78999999988866677766554433 2222223
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchH
Q 002750 332 ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPL 381 (885)
Q Consensus 332 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 381 (885)
.....+..++|.+++...-++..+-....+ ...+..+.|++.++|--.
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAKISDGDLR 225 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHH
Confidence 445678899999999888888777554433 225678889999988654
No 130
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.95 E-value=2.2e-05 Score=83.16 Aligned_cols=95 Identities=12% Similarity=0.027 Sum_probs=62.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc--ccHHHHHHHHHHHhcCCCCCc--cccccH-HHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE--YRTEDLLMRIINSFNIDSPSN--LEKMRE-EDLER 277 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~--~~~~~~-~~~~~ 277 (885)
.-..++|+|++|+|||||++.+++.... .+|+..+|+.+.+. .+..++++.++..+-...... ...... ..+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4568899999999999999999987433 37998899998865 688888888854332211100 000111 12222
Q ss_pred HHHHH-hcCceEEEEEecCCCH
Q 002750 278 CLYQS-LQGYSYLVVIDDVWQK 298 (885)
Q Consensus 278 ~l~~~-l~~~r~LlVlDdv~~~ 298 (885)
..... -.+++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 22222 2689999999999643
No 131
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.95 E-value=0.00024 Score=78.94 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=92.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccc-c-ceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHH
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHK-F-ACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 281 (885)
..-+.|+|++|+|||+|++.+++. .... . ..++|++. ++++..+...+... ..+. +.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~----f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNE----FRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHH----HHH
Confidence 445999999999999999999986 3222 2 24667764 34555555554321 1122 222
Q ss_pred HhcCceEEEEEecCCCH---HHH-HHHHhhCCC-CCCCcEEEEEec-chHH----hhccC---CCCceeecCCCChhhHH
Q 002750 282 SLQGYSYLVVIDDVWQK---ETW-ESLKRAFPD-SKNGSRVILTTR-IREV----AERSD---ERTHAYELPFLRPDESW 348 (885)
Q Consensus 282 ~l~~~r~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iiiTtR-~~~v----~~~~~---~~~~~~~l~~L~~~e~~ 348 (885)
......-+|++||++.. ..+ +.+...+.. ...|..||+||. ...- ..... .....+++++.+.+.-.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 22233448999999742 111 223222221 122446888875 2221 11111 23457889999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 349 KLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 349 ~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
+++.+.+....... -+++...|++.+.|..-.+
T Consensus 270 ~IL~~~~~~~~~~l--~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 270 KIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHHhcCCCC--CHHHHHHHHhccccCHHHH
Confidence 99998875432222 2567888888888765544
No 132
>PRK06620 hypothetical protein; Validated
Probab=97.94 E-value=0.00022 Score=70.96 Aligned_cols=133 Identities=14% Similarity=0.011 Sum_probs=78.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhc
Q 002750 205 SVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQ 284 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 284 (885)
+.+.|+|++|+|||+|++.+.+... . .++... +. . + +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~~~--~~----------------~--------~-------~~~~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIKDI--FF----------------N--------E-------EILE 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcchh--hh----------------c--------h-------hHHh
Confidence 6789999999999999999877621 1 122100 00 0 0 0011
Q ss_pred CceEEEEEecCCCHH--HHHHHHhhCCCCCCCcEEEEEecchHHh-------hccCCCCceeecCCCChhhHHHHHHHHH
Q 002750 285 GYSYLVVIDDVWQKE--TWESLKRAFPDSKNGSRVILTTRIREVA-------ERSDERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 285 ~~r~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiiTtR~~~v~-------~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
..-++++||++..+ ..-.+...+. ..|..||+|++..... ..+ ....+++++++++++...++.+.+
T Consensus 85 -~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl-~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 85 -KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRI-KSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred -cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHH-hCCceEeeCCCCHHHHHHHHHHHH
Confidence 12378899996432 2222222222 2356899998844321 111 234589999999999888888876
Q ss_pred hcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 356 FQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 356 ~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
....- .--+++.+-|++++.|..-.+
T Consensus 161 ~~~~l--~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 161 SISSV--TISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHcCC--CCCHHHHHHHHHHccCCHHHH
Confidence 53221 122577777888887665444
No 133
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00049 Score=78.75 Aligned_cols=193 Identities=13% Similarity=0.087 Sum_probs=110.5
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
++++|.+...+.+..++..+. -...+.++|+.|+||||+|+.+.+.......-+ ...++.....+.+.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 578999999999999987653 346677899999999999998876421111000 001111111111111100
Q ss_pred CCCC--CccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEe-cchHHhhccC
Q 002750 261 IDSP--SNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTT-RIREVAERSD 331 (885)
Q Consensus 261 ~~~~--~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTt-R~~~v~~~~~ 331 (885)
.+.. ........+++....... ..+++-++|+|+++. ...+..+...+..-.....+|++| ....+.....
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 0000 000011222222222111 234566889999974 467888888777655555556554 4333332223
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 332 ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 332 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
.....+++.+++.++....+...+...... .-.+.+..|++.++|.+..+
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 445678899999999988888776433221 12466778888998877644
No 134
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.00022 Score=75.42 Aligned_cols=206 Identities=15% Similarity=0.141 Sum_probs=125.4
Q ss_pred cccccccccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHH
Q 002750 179 VEENVVGFEDDANKLLAHLLKE--DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRII 256 (885)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 256 (885)
.+..++||+.++..+.+++... ....+-+-|.|.+|.|||.+...++.+..-...=..++++++..-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 4678999999999999999754 34567889999999999999999998732211112567888776667788888888
Q ss_pred HHhcCCCCCccccccHHHHHHHHHHHhcCc--eEEEEEecCCCHH--HHHHHHhhCCC-CCCCcEEEEEecchH--Hhhc
Q 002750 257 NSFNIDSPSNLEKMREEDLERCLYQSLQGY--SYLVVIDDVWQKE--TWESLKRAFPD-SKNGSRVILTTRIRE--VAER 329 (885)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--r~LlVlDdv~~~~--~~~~l~~~l~~-~~~gs~iiiTtR~~~--v~~~ 329 (885)
..+........ ...+....+.+..++. .+|+|+|+.+... .-..+...|.+ .-+++++|+.--... ..+.
T Consensus 228 ~~~~q~~~s~~---~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 228 SSLLQDLVSPG---TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHhcCCc---hhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 88722111001 1134455566665443 5899999987532 11112222222 224666655433221 1111
Q ss_pred --------cCCCCceeecCCCChhhHHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCchHHHHHHH
Q 002750 330 --------SDERTHAYELPFLRPDESWKLFCEKAFQSFNA---DEGLEKLGREMLEKCGGLPLAIVVLG 387 (885)
Q Consensus 330 --------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~---~~~~~~~~~~i~~~~~g~Plai~~~~ 387 (885)
..-....+..+|-+.++-.+++..+.-..... +..++-.|++++...|.+-.|+.+.-
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 12345678889999999999999887443322 22344444444444444445544443
No 135
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.90 E-value=0.00012 Score=80.23 Aligned_cols=174 Identities=17% Similarity=0.237 Sum_probs=97.9
Q ss_pred cccccccccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc
Q 002750 179 VEENVVGFEDDANKLLAHLLKE-----------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR 247 (885)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (885)
..+++.|+++.++++.+.+... -...+-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 3457899999999998876321 124567889999999999999999986 2222 222211
Q ss_pred HHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHH-hcCceEEEEEecCCCH-------------HHHHHHHhhC---CC
Q 002750 248 TEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQS-LQGYSYLVVIDDVWQK-------------ETWESLKRAF---PD 310 (885)
Q Consensus 248 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~-------------~~~~~l~~~l---~~ 310 (885)
..+ ...... ........+.+. -...+.+|+|||++.. +....+...+ ..
T Consensus 199 -~~l----~~~~~g---------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 199 -SEL----VQKFIG---------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred -HHH----hHhhcc---------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 111 111100 011112222222 2345679999998742 1222233332 21
Q ss_pred --CCCCcEEEEEecchHHhhcc--C--CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCc
Q 002750 311 --SKNGSRVILTTRIREVAERS--D--ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGL 379 (885)
Q Consensus 311 --~~~gs~iiiTtR~~~v~~~~--~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 379 (885)
...+..||.||...+..... . --...+++++.+.++..++|+.+.....-... .....+++.+.|.
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~ 336 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGA 336 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCC
Confidence 22356777777754432211 1 11356899999999999999987654332111 1134556666654
No 136
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.90 E-value=0.00027 Score=78.47 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=91.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccccc--ceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHH
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKF--ACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 281 (885)
...+.|+|++|+|||+|++.+++.. .... ..++++++. ++...+...+... ..+.. .+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~----~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVSSE------KFTNDFVNALRNN--------KMEEF----KE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEEHH------HHHHHHHHHHHcC--------CHHHH----HH
Confidence 4568899999999999999999863 2222 245666533 3344444444321 11222 22
Q ss_pred HhcCceEEEEEecCCCH---HHH-HHHHhhCCC-CCCCcEEEEEecchH--Hhh---ccC---CCCceeecCCCChhhHH
Q 002750 282 SLQGYSYLVVIDDVWQK---ETW-ESLKRAFPD-SKNGSRVILTTRIRE--VAE---RSD---ERTHAYELPFLRPDESW 348 (885)
Q Consensus 282 ~l~~~r~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iiiTtR~~~--v~~---~~~---~~~~~~~l~~L~~~e~~ 348 (885)
.+++ .-+|||||++.. +.+ +.+...+.. ...|..+|+|+.... +.. ... .....+.+.+.+.++-.
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 3322 238899999743 111 223322221 123456788776421 111 111 22356899999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 349 KLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 349 ~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
+++...+......- -+++...|++.+.|.+-.+
T Consensus 275 ~il~~~~~~~~~~l--~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 275 AILQKKAEEEGLEL--PDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHH
Confidence 99999885543222 2677888888888876644
No 137
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00047 Score=72.74 Aligned_cols=196 Identities=14% Similarity=0.114 Sum_probs=113.9
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccc-------------ccccceeEEEecccccc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDV-------------KHKFACCAWVSVSQEYR 247 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~~~~~ 247 (885)
.+++|.+..++.+...+..+. -.....++|+.|+||+++|..+.+.... ...+....|+.-.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 357899999999999886652 3478899999999999999887654211 11122234443210000
Q ss_pred HHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEE-
Q 002750 248 TEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL-----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVIL- 319 (885)
Q Consensus 248 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iii- 319 (885)
-..+-.+-+...+... .....+..+++. .+.+.+ .+.+-++|+|+++. ......+...+-.-+ .+.+|+
T Consensus 83 g~~~~~~~~~~~~~~~-~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi 159 (314)
T PRK07399 83 GKLITASEAEEAGLKR-KAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILI 159 (314)
T ss_pred ccccchhhhhhccccc-cccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEE
Confidence 0000011111111100 011123334433 233333 35566899999974 466777887776544 444554
Q ss_pred EecchHHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 002750 320 TTRIREVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVV 385 (885)
Q Consensus 320 TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (885)
|+....+..........+.+.++++++..+.+......... ......++..++|.|..+..
T Consensus 160 ~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-----~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-----NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-----hhHHHHHHHHcCCCHHHHHH
Confidence 44444444444466789999999999999999886422111 11135788999999976544
No 138
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.86 E-value=0.0003 Score=79.08 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=92.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccccc--ceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKF--ACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLY 280 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~ 280 (885)
...-+.|+|++|+|||+|++.+.+. ....+ ..+++++.. ++...+...+... ..+. +.
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~----~~ 206 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEE----FK 206 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHH----HH
Confidence 3456899999999999999999987 33332 235566543 2333344433211 1122 22
Q ss_pred HHhcCceEEEEEecCCCH---H-HHHHHHhhCCC-CCCCcEEEEEecchH--H-------hhccCCCCceeecCCCChhh
Q 002750 281 QSLQGYSYLVVIDDVWQK---E-TWESLKRAFPD-SKNGSRVILTTRIRE--V-------AERSDERTHAYELPFLRPDE 346 (885)
Q Consensus 281 ~~l~~~r~LlVlDdv~~~---~-~~~~l~~~l~~-~~~gs~iiiTtR~~~--v-------~~~~~~~~~~~~l~~L~~~e 346 (885)
+.++. .-+|||||++.. + ..+.+...+.. ...|..||+|+.... + ...+ .....+++++.+.++
T Consensus 207 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl-~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 207 EKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF-EWGLTVDIEPPDLET 284 (450)
T ss_pred HHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHh-cCCeeEEecCCCHHH
Confidence 33332 238999999642 1 12233322221 112445888876432 1 1111 234678999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 347 SWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 347 ~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
..+++...+...... --+++...|++.+.|..-.+
T Consensus 285 r~~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 285 RIAILKKKAEEEGID--LPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHcCcCCCHHHH
Confidence 999999988543222 22577888999988877644
No 139
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0006 Score=72.34 Aligned_cols=171 Identities=15% Similarity=0.191 Sum_probs=96.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCC----CCC-ccccccHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNID----SPS-NLEKMREEDLER 277 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~----~~~-~~~~~~~~~~~~ 277 (885)
-...+.++|+.|+||||+|..+.+........... .+++. ..-+.+...-..+ .+. ....+..+++.+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG---ACGSC----KGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 35678899999999999999887652211100000 01110 0011111000000 000 001234444444
Q ss_pred HHHHHh----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecchH-HhhccCCCCceeecCCCChhhHHHH
Q 002750 278 CLYQSL----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIRE-VAERSDERTHAYELPFLRPDESWKL 350 (885)
Q Consensus 278 ~l~~~l----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~l 350 (885)
.....- .+++-++|+|+++. .+....+...+..-+.++.+|+||.+.. +.....+....+.+.+++.++..+.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQW 173 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 322221 23344567899974 5678888888877666777777777653 3333345567899999999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 351 FCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 351 f~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
+...... .. .+.+..++..++|.|.....+
T Consensus 174 L~~~~~~-~~-----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 174 LQQALPE-SD-----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHhccc-CC-----hHHHHHHHHHcCCCHHHHHHH
Confidence 8765311 11 344567789999999755443
No 140
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.4e-05 Score=56.33 Aligned_cols=38 Identities=32% Similarity=0.478 Sum_probs=18.1
Q ss_pred eeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCC
Q 002750 588 LLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNL 633 (885)
Q Consensus 588 ~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~l 633 (885)
+|++|++++|. ++ .+|..+++|++|++|++++|+|+.+
T Consensus 2 ~L~~L~l~~N~------i~--~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQ------IT--DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-------S--SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCC------Cc--ccCchHhCCCCCCEEEecCCCCCCC
Confidence 34555555555 44 4444455555555555555555443
No 141
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.81 E-value=2.5e-06 Score=94.99 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=37.7
Q ss_pred hccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCCCccccCCCCccEEecCCCcc
Q 002750 583 FTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNLPPSIEKLQRLQTLDLSDTLC 653 (885)
Q Consensus 583 ~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~~~~ 653 (885)
+..+..|..|++.+|. +. .+...+..+++|++|++++|.|+.+. .+..+..|+.|++++|..
T Consensus 91 l~~~~~l~~l~l~~n~------i~--~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK------IE--KIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLI 152 (414)
T ss_pred cccccceeeeeccccc------hh--hcccchhhhhcchheecccccccccc-chhhccchhhheeccCcc
Confidence 4566666666666666 55 44433556666666666666666663 445555566666666533
No 142
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.80 E-value=0.00019 Score=86.05 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=97.8
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcc---cccc-cceeEE-EeccccccHHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHND---VKHK-FACCAW-VSVSQEYRTEDLLMRI 255 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~-f~~~~w-v~~~~~~~~~~~~~~i 255 (885)
+.++||+.++.++++.|.... ..-+.++|++|+||||+|+.+++... +... .+..+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~----------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL----------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-----------
Confidence 578999999999999886653 33456999999999999999987621 1111 122232 33221
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHHHh-cCceEEEEEecCCCH---------HHHHH-HHhhCCCCCCCcEEEEEecch
Q 002750 256 INSFNIDSPSNLEKMREEDLERCLYQSL-QGYSYLVVIDDVWQK---------ETWES-LKRAFPDSKNGSRVILTTRIR 324 (885)
Q Consensus 256 l~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~---------~~~~~-l~~~l~~~~~gs~iiiTtR~~ 324 (885)
+..... ....-...+...+.+.- .+.+.+|++|++... .+... +...+. ...-++|-||...
T Consensus 254 ---l~ag~~--~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~ 326 (852)
T TIGR03345 254 ---LQAGAS--VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWA 326 (852)
T ss_pred ---hhcccc--cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHH
Confidence 000000 00000122222222222 246899999998642 11112 333332 2245677777654
Q ss_pred HHhhcc------CCCCceeecCCCChhhHHHHHHHHHhcCC--CCChhHHHHHHHHHHHcCCc
Q 002750 325 EVAERS------DERTHAYELPFLRPDESWKLFCEKAFQSF--NADEGLEKLGREMLEKCGGL 379 (885)
Q Consensus 325 ~v~~~~------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~--~~~~~~~~~~~~i~~~~~g~ 379 (885)
+..... ......+.+++++.++..+++........ .......+....+++.+.+.
T Consensus 327 e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 327 EYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 432211 12346899999999999999755442211 11122345566666766543
No 143
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.0016 Score=63.81 Aligned_cols=182 Identities=20% Similarity=0.200 Sum_probs=109.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEec-cccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSV-SQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 281 (885)
+.+++.|+|.-|+|||++.+...... .+ +.++-+.+ .+..+...+...++.++..+.. ..-....++..+.+..
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~--~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~-~~~~~~~e~~~~~L~a 124 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASL--NE--DQVAVVVIDKPTLSDATLLEAIVADLESQPK-VNVNAVLEQIDRELAA 124 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhc--CC--CceEEEEecCcchhHHHHHHHHHHHhccCcc-chhHHHHHHHHHHHHH
Confidence 45799999999999999999554431 11 12222333 3345677888888888877322 1112223444444544
Q ss_pred Hh-cCce-EEEEEecCCCH--HHHHHHHhhCC---CCCCCcEEEEEecchH-------HhhccCCCCce-eecCCCChhh
Q 002750 282 SL-QGYS-YLVVIDDVWQK--ETWESLKRAFP---DSKNGSRVILTTRIRE-------VAERSDERTHA-YELPFLRPDE 346 (885)
Q Consensus 282 ~l-~~~r-~LlVlDdv~~~--~~~~~l~~~l~---~~~~gs~iiiTtR~~~-------v~~~~~~~~~~-~~l~~L~~~e 346 (885)
.. +++| ..+++||+.+. +..+.++.... +...--+|+.....+- +.......... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 44 5677 99999998753 44444443322 1111123443332211 11111122334 8999999999
Q ss_pred HHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCchHHHHHHHhh
Q 002750 347 SWKLFCEKAFQSFNADE-GLEKLGREMLEKCGGLPLAIVVLGGL 389 (885)
Q Consensus 347 ~~~lf~~~~~~~~~~~~-~~~~~~~~i~~~~~g~Plai~~~~~~ 389 (885)
...|+..+..+...+.+ --.+....|.....|.|.+|+.++..
T Consensus 205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999998877654422 22456778999999999999877643
No 144
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.75 E-value=0.00034 Score=76.55 Aligned_cols=135 Identities=21% Similarity=0.197 Sum_probs=86.4
Q ss_pred ccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCcc
Q 002750 188 DDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNL 267 (885)
Q Consensus 188 ~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~ 267 (885)
.-..++++.+... ..++.|.|+-++||||+++.+... .... .+++..-+......-+.+
T Consensus 24 ~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d------------- 82 (398)
T COG1373 24 KLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD------------- 82 (398)
T ss_pred hhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH-------------
Confidence 3444555544222 229999999999999999777665 2222 455543322111110111
Q ss_pred ccccHHHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHhhCCCCCCCcEEEEEecchHHhh-----ccCCCCceeecCCC
Q 002750 268 EKMREEDLERCLYQSLQGYSYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTTRIREVAE-----RSDERTHAYELPFL 342 (885)
Q Consensus 268 ~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~-----~~~~~~~~~~l~~L 342 (885)
....+.+.-..++..++||.|.....|......+.+.++. +|++|+-+..... ...+....+++.||
T Consensus 83 -------~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 83 -------LLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred -------HHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 1111111112267899999999999999999998887766 8888888665433 33566788999999
Q ss_pred ChhhHHHHH
Q 002750 343 RPDESWKLF 351 (885)
Q Consensus 343 ~~~e~~~lf 351 (885)
|..|...+-
T Consensus 155 SF~Efl~~~ 163 (398)
T COG1373 155 SFREFLKLK 163 (398)
T ss_pred CHHHHHhhc
Confidence 999987654
No 145
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.73 E-value=0.00012 Score=79.07 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=76.4
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
.++++.+...+.+...|.. .+.+.++|++|+|||++|+.+++.......|+.+.||.+++.++..+++....
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r---- 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR---- 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC----
Confidence 4578888899999998864 35788899999999999999998744445678889999998888766654221
Q ss_pred CCCCCccccccHHHHHHHHHHHh--cCceEEEEEecCCCH---HHHHHHHhhCC
Q 002750 261 IDSPSNLEKMREEDLERCLYQSL--QGYSYLVVIDDVWQK---ETWESLKRAFP 309 (885)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~---~~~~~l~~~l~ 309 (885)
.. ..... .......+.+.+.. ..+++++|+|++... ..+..+...+.
T Consensus 247 P~-~vgy~-~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 PN-GVGFR-RKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred CC-CCCeE-ecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 00 00000 00011122222222 246799999999743 23555555444
No 146
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00047 Score=76.39 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=86.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
..-+.|+|++|+|||+|++.+++.. ......+++++. +.+...+...+... .. ..+.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~~------~~f~~~~~~~l~~~--------~~----~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRS------ELFTEHLVSAIRSG--------EM----QRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEeeH------HHHHHHHHHHHhcc--------hH----HHHHHHc
Confidence 3568899999999999999999863 222233556653 33344444444221 11 1233333
Q ss_pred cCceEEEEEecCCCHH----HHHHHHhhCCC-CCCCcEEEEEecch-H----HhhccC---CCCceeecCCCChhhHHHH
Q 002750 284 QGYSYLVVIDDVWQKE----TWESLKRAFPD-SKNGSRVILTTRIR-E----VAERSD---ERTHAYELPFLRPDESWKL 350 (885)
Q Consensus 284 ~~~r~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~iiiTtR~~-~----v~~~~~---~~~~~~~l~~L~~~e~~~l 350 (885)
.. .-+|++||+.... ..+.+...+.. ...|..||+||... . +..... .....+++.+++.++...+
T Consensus 201 ~~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 RN-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred cc-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 33 3388889986431 11222222211 11345688888542 1 111111 2346889999999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHcCCc
Q 002750 351 FCEKAFQSFNADEGLEKLGREMLEKCGGL 379 (885)
Q Consensus 351 f~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 379 (885)
+.+++...... --+++..-|+..+.|.
T Consensus 280 L~~k~~~~~~~--l~~evl~~la~~~~~d 306 (445)
T PRK12422 280 LERKAEALSIR--IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHhcCCC
Confidence 99887554322 1245666677766644
No 147
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.73 E-value=0.00033 Score=83.45 Aligned_cols=155 Identities=16% Similarity=0.213 Sum_probs=87.2
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcc---ccccc-ceeEEEeccccccHHHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHND---VKHKF-ACCAWVSVSQEYRTEDLLMRII 256 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~~~il 256 (885)
+.++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ +..+|.. . .. .++
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-~----~~----~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-D----MG----SLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-c----HH----HHh
Confidence 468999999999999886553 33456999999999999999987621 11112 2334321 1 11 111
Q ss_pred HHhcCCCCCccccccHHHHHHHHHHHh-cCceEEEEEecCCCH-----------HHHHHHHhhCCCCCCCcEEEEEecch
Q 002750 257 NSFNIDSPSNLEKMREEDLERCLYQSL-QGYSYLVVIDDVWQK-----------ETWESLKRAFPDSKNGSRVILTTRIR 324 (885)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iiiTtR~~ 324 (885)
..... .. +.++....+.+.+ ..++.+|++|+++.. +.-+.+...+.. ..-++|-+|...
T Consensus 251 a~~~~------~g-~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~ 321 (731)
T TIGR02639 251 AGTKY------RG-DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYE 321 (731)
T ss_pred hhccc------cc-hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHH
Confidence 10000 00 1222222233332 346789999998632 112233333332 234556555543
Q ss_pred HHhhc------cCCCCceeecCCCChhhHHHHHHHHH
Q 002750 325 EVAER------SDERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 325 ~v~~~------~~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
+.... .......++++.++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 32111 11234678999999999999998654
No 148
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.00071 Score=76.33 Aligned_cols=156 Identities=16% Similarity=0.217 Sum_probs=90.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccccc--ceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHH
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKF--ACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 281 (885)
...+.|+|..|+|||.|++.+++. ....+ ..+++++. ++++..+...+... ..+ .+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~----~f~~ 373 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGD----SFRR 373 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHH----HHHH
Confidence 345899999999999999999986 32222 23566653 33344444333211 111 1223
Q ss_pred HhcCceEEEEEecCCCH---HHHHH-HHhhCCC-CCCCcEEEEEecch--HH-------hhccCCCCceeecCCCChhhH
Q 002750 282 SLQGYSYLVVIDDVWQK---ETWES-LKRAFPD-SKNGSRVILTTRIR--EV-------AERSDERTHAYELPFLRPDES 347 (885)
Q Consensus 282 ~l~~~r~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iiiTtR~~--~v-------~~~~~~~~~~~~l~~L~~~e~ 347 (885)
.+.+- =+|||||+... +.|.. +...+.. ...|..|||||+.. ++ .... ....++++.+.+.+.-
T Consensus 374 ~y~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf-~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 374 RYREM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRF-EWGLITDVQPPELETR 451 (617)
T ss_pred HhhcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhh-hcCceEEcCCCCHHHH
Confidence 33222 37889999643 23322 2222221 12355688888853 11 1111 3456789999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 348 WKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 348 ~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
.+++.+++....-.. -++++.-|++++.+..-.+
T Consensus 452 ~aIL~kka~~r~l~l--~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 452 IAILRKKAVQEQLNA--PPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHHHHhcCCCC--CHHHHHHHHHhccCCHHHH
Confidence 999998875543322 2567777777776654433
No 149
>PLN03150 hypothetical protein; Provisional
Probab=97.70 E-value=3.8e-05 Score=89.59 Aligned_cols=65 Identities=26% Similarity=0.454 Sum_probs=30.1
Q ss_pred CCCCCCcceEEEeee-c-CCCChhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCC
Q 002750 753 LCDCPCLSDLRLRGK-I-EKLPEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSG 818 (885)
Q Consensus 753 l~~~~~L~~L~l~~~-~-~~lp~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 818 (885)
+..+++|+.|+|++| + +.+|..+.. +++|+.|+|++|.+++..+..+++|++|+.|+|++|.+.+
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~-l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhC-CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 344444445554444 2 244444443 2445555555554444444444444555555554444443
No 150
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.70 E-value=0.00041 Score=66.26 Aligned_cols=47 Identities=30% Similarity=0.280 Sum_probs=37.3
Q ss_pred cccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 179 VEENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.++||-++.++++.-.-.+ ++.+-+.|.||+|+||||-+..+++.
T Consensus 25 ~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHH
Confidence 345789999988887765544 35788899999999999988777765
No 151
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=3.3e-05 Score=54.47 Aligned_cols=34 Identities=41% Similarity=0.690 Sum_probs=30.3
Q ss_pred ccccEEEecCCCCCCCCccccCCCCccEEecCCC
Q 002750 618 IHLKYLRLRNSPIDNLPPSIEKLQRLQTLDLSDT 651 (885)
Q Consensus 618 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~~ 651 (885)
++|++|++++|+|+.+|+.+++|++|++|++++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 4799999999999999988999999999999996
No 152
>PLN03150 hypothetical protein; Provisional
Probab=97.69 E-value=2.8e-05 Score=90.72 Aligned_cols=105 Identities=23% Similarity=0.407 Sum_probs=84.7
Q ss_pred CcceEEEeee-c-CCCChhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeE
Q 002750 758 CLSDLRLRGK-I-EKLPEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQ 835 (885)
Q Consensus 758 ~L~~L~l~~~-~-~~lp~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~ 835 (885)
.+..|+|+++ + +.+|..+.. +++|+.|+|++|.+.+..+..++.+++|+.|+|++|.+.+. ++.....+++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEE
Confidence 4778888887 3 578888887 59999999999999988888999999999999999999874 344567899999999
Q ss_pred eecCCCc-ceEEcCCc-cccccceeeccccc
Q 002750 836 LLVDELE-EWQVEEGA-MPRLRGLRIPEHLK 864 (885)
Q Consensus 836 l~~~~l~-~l~~~~~~-~~~L~~L~l~~c~~ 864 (885)
|++|+++ .+|..... +.++..+++.+|+.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCcc
Confidence 9988887 34443333 34667888888876
No 153
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.68 E-value=0.00025 Score=64.90 Aligned_cols=94 Identities=21% Similarity=0.191 Sum_probs=52.7
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcC-
Q 002750 207 ISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQG- 285 (885)
Q Consensus 207 v~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~- 285 (885)
|.|+|++|+||||+|+.+++.. .. ..+.++.+...+. . .......+...+.+.-..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~---~~~~i~~~~~~~~--------------~----~~~~~~~i~~~~~~~~~~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GF---PFIEIDGSELISS--------------Y----AGDSEQKIRDFFKKAKKSA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TS---EEEEEETTHHHTS--------------S----TTHHHHHHHHHHHHHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc--cc---ccccccccccccc--------------c----ccccccccccccccccccc
Confidence 5799999999999999999873 22 2345554432100 0 111223333333333333
Q ss_pred ceEEEEEecCCCH--H-----------HHHHHHhhCCC---CCCCcEEEEEecc
Q 002750 286 YSYLVVIDDVWQK--E-----------TWESLKRAFPD---SKNGSRVILTTRI 323 (885)
Q Consensus 286 ~r~LlVlDdv~~~--~-----------~~~~l~~~l~~---~~~gs~iiiTtR~ 323 (885)
++.+|++||++.. . ....+...+.. ...+..||.||..
T Consensus 58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 3799999998632 1 13444444433 2234667777765
No 154
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.66 E-value=0.0021 Score=77.12 Aligned_cols=161 Identities=15% Similarity=0.189 Sum_probs=86.7
Q ss_pred ccccccccccHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHH
Q 002750 180 EENVVGFEDDANKLLAHLLKE----DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRI 255 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (885)
...++|.+..++++.+++... ..+.+++.++|++|+|||++|+.+.+. ....|-. ++++...+..++..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~~---i~~~~~~~~~~i~g-- 391 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFVR---FSLGGVRDEAEIRG-- 391 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeEE---EeCCCcccHHHHcC--
Confidence 345789999999998876422 234568999999999999999999987 3333321 22332222222111
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCHH------HHHHHHhhCC--------CC-------CCC
Q 002750 256 INSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQKE------TWESLKRAFP--------DS-------KNG 314 (885)
Q Consensus 256 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------~~~~l~~~l~--------~~-------~~g 314 (885)
... .........+...+....... -+++||+++... ....+...+. +. -.+
T Consensus 392 ------~~~-~~~g~~~g~i~~~l~~~~~~~-~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 392 ------HRR-TYVGAMPGRIIQGLKKAKTKN-PLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred ------CCC-ceeCCCCchHHHHHHHhCcCC-CEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 000 000111122333344333333 378999986431 1223333222 11 023
Q ss_pred cEEEEEecchH-HhhccCCCCceeecCCCChhhHHHHHHHHH
Q 002750 315 SRVILTTRIRE-VAERSDERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 315 s~iiiTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
..+|.||.... +..........+++.+++.++-.+++....
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 34455555432 111112344678999999998888886654
No 155
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.66 E-value=0.00044 Score=76.97 Aligned_cols=163 Identities=10% Similarity=0.123 Sum_probs=90.4
Q ss_pred cccccccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCccccc---ccceeEEEeccccc
Q 002750 181 ENVVGFEDDANKLLAHLLKE-----------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKH---KFACCAWVSVSQEY 246 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~ 246 (885)
.++.|.+..++++.+.+... -...+-+.++|++|+|||++|+.+++...... .+....|+++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 45788999999988876421 12345688999999999999999998732110 1123344544321
Q ss_pred cHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHH-hcCceEEEEEecCCCH---------HH-----HHHHHhhCCCC
Q 002750 247 RTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQS-LQGYSYLVVIDDVWQK---------ET-----WESLKRAFPDS 311 (885)
Q Consensus 247 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~---------~~-----~~~l~~~l~~~ 311 (885)
+ ++...... .......+.....+. -.+++.+|+||+++.. .+ ...+...+...
T Consensus 261 ---e----Ll~kyvGe-----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 261 ---E----LLNKYVGE-----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ---h----hcccccch-----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 1 11111000 000011111111111 1357899999999742 11 23344444321
Q ss_pred --CCCcEEEEEecchHHhhcc--C-CC-CceeecCCCChhhHHHHHHHHHh
Q 002750 312 --KNGSRVILTTRIREVAERS--D-ER-THAYELPFLRPDESWKLFCEKAF 356 (885)
Q Consensus 312 --~~gs~iiiTtR~~~v~~~~--~-~~-~~~~~l~~L~~~e~~~lf~~~~~ 356 (885)
..+..||.||...+..... . +. ...++++..+.++..++|..+..
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 2355566666655432211 1 11 34689999999999999988763
No 156
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0021 Score=71.64 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=93.8
Q ss_pred cccccccccccHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHH
Q 002750 179 VEENVVGFEDDANKLLAHLLKE----DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMR 254 (885)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (885)
-+++-+|.++.+++|++++.-+ +.+.++++.+||+|||||++|+.++.. ....|- -++++.-.|..++--
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkFf---RfSvGG~tDvAeIkG- 482 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKFF---RFSVGGMTDVAEIKG- 482 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCceE---EEeccccccHHhhcc-
Confidence 3566789999999999998543 456799999999999999999999876 344442 245555444433211
Q ss_pred HHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH------HHHHHHHhhCCC------------CC-CCc
Q 002750 255 IINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK------ETWESLKRAFPD------------SK-NGS 315 (885)
Q Consensus 255 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~------~~~~~l~~~l~~------------~~-~gs 315 (885)
...... ..| ...+++.|++. +..+=|+.+|.|+.. +--..+...|.. -. .=|
T Consensus 483 ----HRRTYV---GAM-PGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 483 ----HRRTYV---GAM-PGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred ----cceeee---ccC-ChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchh
Confidence 011111 111 23344444433 344558889998742 111222222221 11 126
Q ss_pred EEEEEecchHHhhc---cCCCCceeecCCCChhhHHHHHHHHH
Q 002750 316 RVILTTRIREVAER---SDERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 316 ~iiiTtR~~~v~~~---~~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
+|++......+... .......|++.+-..+|-.++-+++.
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 66543332222211 12445788999999888887776654
No 157
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=3.1e-05 Score=76.50 Aligned_cols=175 Identities=17% Similarity=0.216 Sum_probs=105.6
Q ss_pred ccCCCCeeEeecccccchhhccchhhhhccCCCceEEeeecCCccccccccC-CCCCCcceEEEeee---cCCCChhhhh
Q 002750 702 KLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPL-CDCPCLSDLRLRGK---IEKLPEDIHV 777 (885)
Q Consensus 702 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~---~~~lp~~~~~ 777 (885)
..+.++.|++.+|.+++-.+.. .-+.++++|+.|+++++...+. ...+ .+..+|+.|.|.|. +....+.+..
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~--~ile~lP~l~~LNls~N~L~s~--I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIG--AILEQLPALTTLNLSCNSLSSD--IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHHHHH--HHHhcCccceEeeccCCcCCCc--cccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 4566777888887664422211 4566778888888876643221 1222 35677888888774 2233323333
Q ss_pred cCCCccEEEEeccCCC----------CCChh--H-----------------HhcCcCCCceEeeccccCCeEEeecCCCC
Q 002750 778 ILPNLECLSLEDSNLD----------DDPMP--E-----------------LEKMSNLVILDLSYDSYSGKKLFCTAKGF 828 (885)
Q Consensus 778 ~l~~L~~L~L~~~~l~----------~~~~~--~-----------------l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 828 (885)
+|.++.|.++.|++. +..+. . -.-+|++..+.+..|.+.+..-......|
T Consensus 145 -lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 145 -LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred -chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 366666666666321 11100 0 12257777777777766655444556678
Q ss_pred cccceeEeecCCCcceEE--cCCccccccceeeccccc-CCCCc------cccCCCCCCCCC
Q 002750 829 PRLEILQLLVDELEEWQV--EEGAMPRLRGLRIPEHLK-SRIPE------RLRSIPPPAEGE 881 (885)
Q Consensus 829 ~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~c~~-~~lp~------~l~~L~~L~~~~ 881 (885)
|.+-.|.|..+++.+|.. ....||.|..|.+..+|+ ..+-. -+.+|+.+++.+
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 999999999888988843 345799999999999999 32221 245666665543
No 158
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.64 E-value=0.00068 Score=73.88 Aligned_cols=174 Identities=14% Similarity=0.177 Sum_probs=97.2
Q ss_pred ccccccccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccH
Q 002750 180 EENVVGFEDDANKLLAHLLKE-----------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRT 248 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 248 (885)
-.++.|.+..++++.+.+... -...+-+.++|++|+|||++|+.+++. ....| +.+..+
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s----- 213 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGS----- 213 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH-----
Confidence 346889998888888766311 124577889999999999999999986 33333 222211
Q ss_pred HHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH-------------H---HHHHHHhhCCC--
Q 002750 249 EDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK-------------E---TWESLKRAFPD-- 310 (885)
Q Consensus 249 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-------------~---~~~~l~~~l~~-- 310 (885)
.+ ...... .....+...+.......+.+|++|+++.. . .+..+...+..
T Consensus 214 -~l----~~k~~g--------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 214 -EF----VQKYLG--------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred -HH----HHHhcc--------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 11 111100 01112222233333567789999997632 1 12223333322
Q ss_pred CCCCcEEEEEecchHHhhcc--C--CCCceeecCCCChhhHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCch
Q 002750 311 SKNGSRVILTTRIREVAERS--D--ERTHAYELPFLRPDESWKLFCEKAFQSFNA-DEGLEKLGREMLEKCGGLP 380 (885)
Q Consensus 311 ~~~gs~iiiTtR~~~v~~~~--~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 380 (885)
...+..||+||...+..... . --...++++..+.++..++|........-. ... ..++++.+.|.-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 23466788888755433221 1 124568888889999888888765432211 112 345566666543
No 159
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.64 E-value=0.0032 Score=74.88 Aligned_cols=161 Identities=12% Similarity=0.160 Sum_probs=91.2
Q ss_pred ccccccccccHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHH
Q 002750 180 EENVVGFEDDANKLLAHLLKE----DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRI 255 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (885)
+.+.+|.+..+++|++++... ..+..++.++|++|+||||+|+.+... ....|-. ++++...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~~---i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYVR---MALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEEE---EEcCCCCCHHHhccch
Confidence 456899999999999988632 234578999999999999999999975 3333322 3333332332221111
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCHH------HHHHHHhhCCCC---------------CCC
Q 002750 256 INSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQKE------TWESLKRAFPDS---------------KNG 314 (885)
Q Consensus 256 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------~~~~l~~~l~~~---------------~~g 314 (885)
...... ....+...+...- ..+-+++||+++... ....+...+... -.+
T Consensus 396 -~~~~g~--------~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 396 -RTYIGS--------MPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred -hccCCC--------CCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 001000 1112233333222 223378899986431 124444444321 123
Q ss_pred cEEEEEecchHHhhccCCCCceeecCCCChhhHHHHHHHHH
Q 002750 315 SRVILTTRIREVAERSDERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 315 s~iiiTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
.-+|.|+.+..+....-....++.+.+++.+|-.++..++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 44455555443322223455688999999999988887765
No 160
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.58 E-value=0.00036 Score=76.49 Aligned_cols=154 Identities=18% Similarity=0.205 Sum_probs=88.6
Q ss_pred cccccccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE-----------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTE 249 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (885)
.++.|.+..++++.+.+.-. -...+-+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 45688999998888876321 123456889999999999999999986 33333 1222111
Q ss_pred HHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH-------------H---HHHHHHhhCCC--C
Q 002750 250 DLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK-------------E---TWESLKRAFPD--S 311 (885)
Q Consensus 250 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-------------~---~~~~l~~~l~~--~ 311 (885)
+ ...... .....+...+.....+.+.+|+||+++.. + ....+...+.. .
T Consensus 253 -L----~~k~~G--------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 -L----IQKYLG--------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred -h----hhhhcc--------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 1 111100 01111222222233456788999987521 1 11122222221 2
Q ss_pred CCCcEEEEEecchHHhhcc----CCCCceeecCCCChhhHHHHHHHHHhc
Q 002750 312 KNGSRVILTTRIREVAERS----DERTHAYELPFLRPDESWKLFCEKAFQ 357 (885)
Q Consensus 312 ~~gs~iiiTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~lf~~~~~~ 357 (885)
..+..||+||...+..... +--...+++...+.++..++|..+...
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 3467788888755443321 112457889999999999999977644
No 161
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.57 E-value=1.6e-05 Score=88.45 Aligned_cols=58 Identities=31% Similarity=0.428 Sum_probs=27.4
Q ss_pred hccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCCCccccCCCCccEEecCC
Q 002750 583 FTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNLPPSIEKLQRLQTLDLSD 650 (885)
Q Consensus 583 ~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~ 650 (885)
+..+.+|++|++++|. |. .+. .+..++.|+.|++++|.|+.++ .+..+.+|+.+++++
T Consensus 114 l~~~~~L~~L~ls~N~------I~--~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNK------IT--KLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSY 171 (414)
T ss_pred hhhhhcchheeccccc------cc--ccc-chhhccchhhheeccCcchhcc-CCccchhhhcccCCc
Confidence 3445555555555555 44 332 2444444555555555554443 223345555555554
No 162
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00034 Score=78.06 Aligned_cols=161 Identities=14% Similarity=0.226 Sum_probs=93.3
Q ss_pred ccccccccccHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHH
Q 002750 180 EENVVGFEDDANKLLAHLLKE----DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRI 255 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (885)
+.+-+|.++.+++|+++|.-. .-+.+++++|||+|+|||+|++.+++. ....|- -++++.--|..++-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkfv---R~sLGGvrDEAEIR--- 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKFV---RISLGGVRDEAEIR--- 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCEE---EEecCccccHHHhc---
Confidence 456789999999999999543 335589999999999999999999986 555552 23444433333221
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH------HHHHHHHhhCCCCC-------------CCcE
Q 002750 256 INSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK------ETWESLKRAFPDSK-------------NGSR 316 (885)
Q Consensus 256 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~------~~~~~l~~~l~~~~-------------~gs~ 316 (885)
-.....- ..+ ...+++.+.+. +.++=|++||.++.. +--..+...|.... .=|.
T Consensus 394 --GHRRTYI---Gam-PGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 394 --GHRRTYI---GAM-PGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred --ccccccc---ccC-ChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 1111111 111 12233333322 345568999998742 11223333332111 0144
Q ss_pred EEE-Eec-chH-HhhccCCCCceeecCCCChhhHHHHHHHHH
Q 002750 317 VIL-TTR-IRE-VAERSDERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 317 iii-TtR-~~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
|++ ||- +-+ +..-.-....++++.+-+++|-.++-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 443 333 222 222223556899999999999988877765
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.57 E-value=0.00033 Score=65.07 Aligned_cols=88 Identities=18% Similarity=0.074 Sum_probs=47.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
...+.|+|++|+||||+++.++... ......+++++.+........... ........ ...........+.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK----ASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH-hhhhhccC----CCCCHHHHHHHHHHHH
Confidence 3578999999999999999999873 222234566665543322221111 00111110 1112222233344444
Q ss_pred cCc-eEEEEEecCCCH
Q 002750 284 QGY-SYLVVIDDVWQK 298 (885)
Q Consensus 284 ~~~-r~LlVlDdv~~~ 298 (885)
+.. ..++++|+++..
T Consensus 75 ~~~~~~viiiDei~~~ 90 (148)
T smart00382 75 RKLKPDVLILDEITSL 90 (148)
T ss_pred HhcCCCEEEEECCccc
Confidence 333 389999999864
No 164
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.55 E-value=0.00044 Score=83.47 Aligned_cols=154 Identities=17% Similarity=0.189 Sum_probs=87.0
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcc---ccccc-ceeEEEeccccccHHHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHND---VKHKF-ACCAWVSVSQEYRTEDLLMRII 256 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~~~il 256 (885)
+.++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... +..+|.- +... ++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~----l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGL----LL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHH----Hh
Confidence 458999999999999997553 33456999999999999999887521 11111 2344421 1111 11
Q ss_pred HHhcCCCCCccccccHHH-HHHHHHHHhcCceEEEEEecCCCH---------HHHHHH-HhhCCCCCCCcEEEEEecchH
Q 002750 257 NSFNIDSPSNLEKMREED-LERCLYQSLQGYSYLVVIDDVWQK---------ETWESL-KRAFPDSKNGSRVILTTRIRE 325 (885)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~-~~~~l~~~l~~~r~LlVlDdv~~~---------~~~~~l-~~~l~~~~~gs~iiiTtR~~~ 325 (885)
. .... .+ +.++ +...+.+.-..++.+|++|++... .+...+ ...+. ...-++|.+|...+
T Consensus 248 a---g~~~---~g-e~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~e 318 (821)
T CHL00095 248 A---GTKY---RG-EFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDE 318 (821)
T ss_pred c---cCCC---cc-HHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHH
Confidence 1 1100 01 1222 222232223456789999998532 112222 22222 22356676666655
Q ss_pred Hhhcc------CCCCceeecCCCChhhHHHHHHHH
Q 002750 326 VAERS------DERTHAYELPFLRPDESWKLFCEK 354 (885)
Q Consensus 326 v~~~~------~~~~~~~~l~~L~~~e~~~lf~~~ 354 (885)
..... ......+.+...+.++...+++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43221 233467788888999988887753
No 165
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0022 Score=67.45 Aligned_cols=179 Identities=16% Similarity=0.187 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccce-----eEEEeccccccHHHHHHHHHHHhc-CCC
Q 002750 190 ANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFAC-----CAWVSVSQEYRTEDLLMRIINSFN-IDS 263 (885)
Q Consensus 190 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-----~~wv~~~~~~~~~~~~~~il~~l~-~~~ 263 (885)
.+++...+..+ .-...+.++|+.|+||+++|..+.+.........+ +-|+..+..+|.. .+. .+.
T Consensus 13 ~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~--------~i~~~p~ 83 (319)
T PRK08769 13 YDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ--------LVSFIPN 83 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE--------EEecCCC
Confidence 44555555433 23457889999999999999888764211110000 0000000000000 000 000
Q ss_pred CCc---cccccHHHHHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecc-hHHhhccCC
Q 002750 264 PSN---LEKMREEDLERCLYQSL-----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRI-REVAERSDE 332 (885)
Q Consensus 264 ~~~---~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~~~ 332 (885)
..+ ...+..+++.+. .+.+ .+++-++|+|+++. ...-..+...+..-..++.+|++|.. ..+..-+.+
T Consensus 84 ~~~~k~~~~I~idqIR~l-~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 84 RTGDKLRTEIVIEQVREI-SQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred cccccccccccHHHHHHH-HHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh
Confidence 000 011234444333 2222 24556899999975 45667777777766667777777664 344433345
Q ss_pred CCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 333 RTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 333 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
....+.+.+++.+++.+.+... + .+ +..+..++..++|.|+....+
T Consensus 163 RCq~i~~~~~~~~~~~~~L~~~--~-~~-----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 163 RCQRLEFKLPPAHEALAWLLAQ--G-VS-----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hheEeeCCCcCHHHHHHHHHHc--C-CC-----hHHHHHHHHHcCCCHHHHHHH
Confidence 6778999999999999888653 1 11 233667899999999865443
No 166
>PRK08116 hypothetical protein; Validated
Probab=97.50 E-value=0.00049 Score=71.00 Aligned_cols=101 Identities=24% Similarity=0.352 Sum_probs=57.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhc
Q 002750 205 SVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQ 284 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 284 (885)
.-+.++|.+|+|||.||..+++.. ..+...+++++ ..+++..+...+..... .+..+ +.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~~-----~~~~~----~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSGK-----EDENE----IIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhcccc-----ccHHH----HHHHhc
Confidence 458899999999999999999873 22233456665 33445555444432111 11222 223343
Q ss_pred CceEEEEEecCC--CHHHHHH--HHhhCCC-CCCCcEEEEEecc
Q 002750 285 GYSYLVVIDDVW--QKETWES--LKRAFPD-SKNGSRVILTTRI 323 (885)
Q Consensus 285 ~~r~LlVlDdv~--~~~~~~~--l~~~l~~-~~~gs~iiiTtR~ 323 (885)
+-. ||||||+. ....|.. +...+.. ...+..+|+||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 333 89999994 3334433 3222221 2345668999873
No 167
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.49 E-value=0.0049 Score=60.89 Aligned_cols=122 Identities=18% Similarity=0.297 Sum_probs=74.1
Q ss_pred cccccccccccccHHHHHHHH---hcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHH
Q 002750 177 YAVEENVVGFEDDANKLLAHL---LKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLM 253 (885)
Q Consensus 177 ~~~~~~~vGr~~~~~~l~~~L---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (885)
++.-+.++|.|.+++.+++-. ..+. ...-+.++|..|.|||++++.+.+...-++ .--|.+.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~-------- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE-------- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH--------
Confidence 355678999999999888754 2333 455677899999999999999987522222 112222211
Q ss_pred HHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCC---CHHHHHHHHhhCCC----CCCCcEEEEEecchHH
Q 002750 254 RIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVW---QKETWESLKRAFPD----SKNGSRVILTTRIREV 326 (885)
Q Consensus 254 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~---~~~~~~~l~~~l~~----~~~gs~iiiTtR~~~v 326 (885)
+-.+...+...++ -.+.||+|++||+. +...+..++..|.. .+.+..|..||.....
T Consensus 90 --------------~L~~l~~l~~~l~--~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 --------------DLGDLPELLDLLR--DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred --------------HhccHHHHHHHHh--cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 0112223333333 14578999999984 34567777777653 2334555566665554
Q ss_pred h
Q 002750 327 A 327 (885)
Q Consensus 327 ~ 327 (885)
.
T Consensus 154 v 154 (249)
T PF05673_consen 154 V 154 (249)
T ss_pred c
Confidence 3
No 168
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.48 E-value=0.0012 Score=75.54 Aligned_cols=198 Identities=11% Similarity=0.122 Sum_probs=101.7
Q ss_pred ccccccccccccHHHHHHHHhcCC---CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccc---cccHHHH
Q 002750 178 AVEENVVGFEDDANKLLAHLLKED---PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQ---EYRTEDL 251 (885)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~ 251 (885)
..-++++|-+..++++..++.... ...+++.|+|++|+||||+++.++... . ++..-|++-.. ..+...+
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l--~--~~~~Ew~npv~~~~~~~~~~~ 156 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL--G--IQVQEWSNPTLPDFQKNDHKV 156 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh--h--hHHHHHhhhhhhccccccccc
Confidence 344679999999999999986532 234689999999999999999999762 2 22233432110 0001111
Q ss_pred HHHHHHHhcCCCCCccccccHHHHHHHHHH---H----hcCceEEEEEecCCCH-----HHHHHHHh-hCCCCCCCcEEE
Q 002750 252 LMRIINSFNIDSPSNLEKMREEDLERCLYQ---S----LQGYSYLVVIDDVWQK-----ETWESLKR-AFPDSKNGSRVI 318 (885)
Q Consensus 252 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~---~----l~~~r~LlVlDdv~~~-----~~~~~l~~-~l~~~~~gs~ii 318 (885)
...+..++..... .......+...... . ..+++.+|++|++.+. ..+..+.. .....+.-.-|+
T Consensus 157 ~~s~~~~~~~~~s---~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~ 233 (637)
T TIGR00602 157 TLSLESCFSNFQS---QIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVF 233 (637)
T ss_pred chhhhhccccccc---hHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEE
Confidence 1222222221111 00011111111111 1 1356779999999542 24455544 222233223455
Q ss_pred EEecchH---------Hh-------hcc-CCCCceeecCCCChhhHHHHHHHHHhcCCCC--Ch---hHHHHHHHHHHHc
Q 002750 319 LTTRIRE---------VA-------ERS-DERTHAYELPFLRPDESWKLFCEKAFQSFNA--DE---GLEKLGREMLEKC 376 (885)
Q Consensus 319 iTtR~~~---------v~-------~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~--~~---~~~~~~~~i~~~~ 376 (885)
+||-... .. ... ......+++.+++..+..+.+.+.+...... .+ .-.+....|+..+
T Consensus 234 I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s 313 (637)
T TIGR00602 234 IITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGC 313 (637)
T ss_pred EecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhC
Confidence 5552211 00 010 1233468899999999777776655332110 00 0135566777777
Q ss_pred CCchHH
Q 002750 377 GGLPLA 382 (885)
Q Consensus 377 ~g~Pla 382 (885)
+|--..
T Consensus 314 ~GDiRs 319 (637)
T TIGR00602 314 SGDIRS 319 (637)
T ss_pred CChHHH
Confidence 775543
No 169
>CHL00176 ftsH cell division protein; Validated
Probab=97.47 E-value=0.0022 Score=74.16 Aligned_cols=172 Identities=13% Similarity=0.183 Sum_probs=96.8
Q ss_pred cccccccccHHHHHHHH---hcCC-------CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHH
Q 002750 181 ENVVGFEDDANKLLAHL---LKED-------PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTED 250 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L---~~~~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 250 (885)
++++|.++.++++.+.+ .... ...+-|.++|++|+|||++|+.++... .. -|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~-----p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EV-----PFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC-----CeeeccHH----H
Confidence 45788877666655543 2221 124568899999999999999998762 21 23333211 1
Q ss_pred HHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH------------HH----HHHHHhhCCC--CC
Q 002750 251 LLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK------------ET----WESLKRAFPD--SK 312 (885)
Q Consensus 251 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~------------~~----~~~l~~~l~~--~~ 312 (885)
+. .... ......+...+.......+.+|++||++.. .. +..+...+.. ..
T Consensus 252 f~----~~~~--------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 252 FV----EMFV--------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HH----HHhh--------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 11 0000 001223334444555677899999999632 12 2223333322 23
Q ss_pred CCcEEEEEecchHHhhc-c-C-C-CCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 002750 313 NGSRVILTTRIREVAER-S-D-E-RTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGG 378 (885)
Q Consensus 313 ~gs~iiiTtR~~~v~~~-~-~-~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g 378 (885)
.+..||.||...+.... . . + -...+.++..+.++-.++++.++..... . .......+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~--~d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-S--PDVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-c--hhHHHHHHHhcCCC
Confidence 45667777765443221 1 1 1 2357788888999999999887754221 1 12345667777777
No 170
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.45 E-value=0.022 Score=60.98 Aligned_cols=211 Identities=16% Similarity=0.147 Sum_probs=130.6
Q ss_pred ccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHH-HHHhcCcccccccceeEEEecccc---ccHHHHHHHHHHHhcC
Q 002750 186 FEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLA-RKLYHHNDVKHKFACCAWVSVSQE---YRTEDLLMRIINSFNI 261 (885)
Q Consensus 186 r~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~~l~~ 261 (885)
|.+..++|..||.+.. -..|.|.||-|+||+.|+ .++..+.. .+..++|.+- -+...++..++.+++.
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 5677899999997663 469999999999999999 78877622 2666666543 2344566666666664
Q ss_pred CCC----------------------CccccccHHHHHHHH-------HH-------------------Hh---cCceEEE
Q 002750 262 DSP----------------------SNLEKMREEDLERCL-------YQ-------------------SL---QGYSYLV 290 (885)
Q Consensus 262 ~~~----------------------~~~~~~~~~~~~~~l-------~~-------------------~l---~~~r~Ll 290 (885)
-+. .+.......++.+.+ ++ ++ ..++=+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 221 011111122222222 11 01 0125589
Q ss_pred EEecCCCH-----HHHHHHHhh---CCCCCCCcEEEEEecchHHhhcc-----CCCCceeecCCCChhhHHHHHHHHHhc
Q 002750 291 VIDDVWQK-----ETWESLKRA---FPDSKNGSRVILTTRIREVAERS-----DERTHAYELPFLRPDESWKLFCEKAFQ 357 (885)
Q Consensus 291 VlDdv~~~-----~~~~~l~~~---l~~~~~gs~iiiTtR~~~v~~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~~ 357 (885)
|+|++-.. -.|+.+... +- ..+-.+||++|-+....... ......+.|.-.+.+.|..|...+...
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 99998532 223333222 21 23456799988877655543 223467889999999999999988754
Q ss_pred CCCC-------------C-----hhHHHHHHHHHHHcCCchHHHHHHHhhhc-CCChH-HHHHHHHHH
Q 002750 358 SFNA-------------D-----EGLEKLGREMLEKCGGLPLAIVVLGGLLS-KKKPQ-EWRIVRDHI 405 (885)
Q Consensus 358 ~~~~-------------~-----~~~~~~~~~i~~~~~g~Plai~~~~~~l~-~~~~~-~w~~~~~~l 405 (885)
.... . .....-....++..||=-.-+..+++.++ +.+.+ ..+.+..+-
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~qs 299 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQS 299 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3110 0 12445567788899999999999999999 55543 455555443
No 171
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.0034 Score=66.10 Aligned_cols=177 Identities=11% Similarity=0.095 Sum_probs=100.9
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCC----CCCc
Q 002750 191 NKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNID----SPSN 266 (885)
Q Consensus 191 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~----~~~~ 266 (885)
+.+...+..+. -.....++|+.|+||+++|..+.+...-....... .++.. ..-+.+...-..+ .+..
T Consensus 12 ~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 12 QQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ---PCGQC----HSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred HHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHhcCCCCCEEEEcccc
Confidence 44555554332 34577799999999999999887642111100000 01110 1111111000000 0000
Q ss_pred cccccHHHHHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecch-HHhhccCCCCceee
Q 002750 267 LEKMREEDLERCLYQSL-----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIR-EVAERSDERTHAYE 338 (885)
Q Consensus 267 ~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~~~~~~~~ 338 (885)
......+++.+. .+.+ .+++=++|+|+++. ......+...+..-+.++.+|++|.+. .+.....+....+.
T Consensus 84 ~~~I~id~iR~l-~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 84 NKDIGVDQVREI-NEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred CCCCCHHHHHHH-HHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 012344454433 2322 35556888999975 467788888888777777777777654 34333345567899
Q ss_pred cCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 339 LPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 339 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
+.++++++..+.+...... . ...+...+..++|.|..+
T Consensus 163 ~~~~~~~~~~~~L~~~~~~----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSSA----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCCHHHHHHHHHHHhcc----C---hHHHHHHHHHcCCCHHHH
Confidence 9999999999988876421 1 123566788899999633
No 172
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.0031 Score=67.43 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=91.2
Q ss_pred cccc-ccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 182 NVVG-FEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 182 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
.++| -+..++.+...+..+. -.....++|+.|+||||+|..+.+...-....... .++.. ...+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHhcCCC
Confidence 3556 5556666766665442 35677899999999999999886642111101000 01100 00111100000
Q ss_pred CC----CCCccccccHHHHHHHHHHH----hcCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecch-HHhhc
Q 002750 261 ID----SPSNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIR-EVAER 329 (885)
Q Consensus 261 ~~----~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~ 329 (885)
.+ .+ .-.....+++.+.+... ..+.+=++|+|+++. .+....+...+..-+.++.+|++|.+. .+...
T Consensus 78 pD~~~i~~-~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 78 PDVHLVAP-DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPT 156 (329)
T ss_pred CCEEEecc-ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHH
Confidence 00 00 00112334443333221 224445799999874 456777888888766777777777643 33333
Q ss_pred cCCCCceeecCCCChhhHHHHHHHH
Q 002750 330 SDERTHAYELPFLRPDESWKLFCEK 354 (885)
Q Consensus 330 ~~~~~~~~~l~~L~~~e~~~lf~~~ 354 (885)
.......+++.+++.++..+.+...
T Consensus 157 IrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 157 ILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3456788999999999998888653
No 173
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.44 E-value=1.7e-05 Score=77.23 Aligned_cols=246 Identities=22% Similarity=0.158 Sum_probs=119.8
Q ss_pred ccCceeEEEeccccccccccccccC---CCchhhcccccccEEEecCCCCC----CCC-------ccccCCCCccEEecC
Q 002750 584 TSFSLLRVYDAEVVNRFRTGIFSEF---PLPVEIGQLIHLKYLRLRNSPID----NLP-------PSIEKLQRLQTLDLS 649 (885)
Q Consensus 584 ~~~~~Lr~L~L~~~~~~~~~~l~~~---~lp~~i~~l~~Lr~L~L~~~~i~----~lp-------~~i~~L~~L~~L~Ls 649 (885)
..+..+..+|||+|. +... .+...|.+-.+|+..+++.-... ++| +.+-++++|++.+||
T Consensus 27 ~~~d~~~evdLSGNt------igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 27 EMMDELVEVDLSGNT------IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred HhhcceeEEeccCCc------ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 346777778888877 4321 23344555667777777652211 333 234567788888888
Q ss_pred CCccc--CCh----hhccccccccc--cccccccccccCcc-CCCccCccccccccccCCcccCCCCeeEeecccccchh
Q 002750 650 DTLCG--IPT----EISKLTELRHL--IGNFSGYLPIENLT-NLRTLKYVSVESWNRLSPDKLINLRELHIEDKEWTREK 720 (885)
Q Consensus 650 ~~~~~--lp~----~i~~L~~L~~L--~~~~~~~~~~~~l~-~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 720 (885)
.|-.. .|+ .|++-+.|.|| .|+-.+|..-+.+. .|++|... .-...-+.|+...+..|++....
T Consensus 101 DNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n-------KKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 101 DNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN-------KKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred ccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH-------hhhccCCCceEEEeccchhccCc
Confidence 75332 333 34566677777 33333433311111 12222110 01223455666666666553322
Q ss_pred hccchhhhhccCCCceEEeeecCCcccc----ccccCCCCCCcceEEEeeecCCCChhhhhcCCCccEEEEeccCCCCCC
Q 002750 721 VLFTFNSIAKLKSLQILSIKLSGERSFD----LLQPLCDCPCLSDLRLRGKIEKLPEDIHVILPNLECLSLEDSNLDDDP 796 (885)
Q Consensus 721 ~~~~~~~l~~l~~L~~l~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~lp~~~~~~l~~L~~L~L~~~~l~~~~ 796 (885)
.......+..-..|+.+.+..++..+.. ....+.. +++|+.|+|.+|.++...
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-----------------------~~~LevLDlqDNtft~~g 230 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-----------------------SHSLEVLDLQDNTFTLEG 230 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-----------------------hCcceeeeccccchhhhh
Confidence 2222133333356666666555432210 0111222 356666666666554322
Q ss_pred h----hHHhcCcCCCceEeeccccCCeEEe-----ecCCCCcccceeEeecCCCcc--e------EEcCCccccccceee
Q 002750 797 M----PELEKMSNLVILDLSYDSYSGKKLF-----CTAKGFPRLEILQLLVDELEE--W------QVEEGAMPRLRGLRI 859 (885)
Q Consensus 797 ~----~~l~~l~~L~~L~L~~n~~~~~~~~-----~~~~~~~~L~~L~l~~~~l~~--l------~~~~~~~~~L~~L~l 859 (885)
. ..+...+.|+.|.+..|.++..... +....+|+|..|.+.+|.... + .+..+++|-|..|.+
T Consensus 231 S~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ 310 (388)
T COG5238 231 SRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLER 310 (388)
T ss_pred HHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHH
Confidence 1 2234445566666655554432211 111235666666666554432 1 123467788888888
Q ss_pred cccccC
Q 002750 860 PEHLKS 865 (885)
Q Consensus 860 ~~c~~~ 865 (885)
.+|+++
T Consensus 311 ngNr~~ 316 (388)
T COG5238 311 NGNRIK 316 (388)
T ss_pred ccCcch
Confidence 887773
No 174
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.013 Score=61.70 Aligned_cols=194 Identities=10% Similarity=0.068 Sum_probs=108.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCC----CCC
Q 002750 190 ANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNID----SPS 265 (885)
Q Consensus 190 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~----~~~ 265 (885)
.+++...+..+ .-...+.++|+.|+||+++|..+.+...-...-+. .++.. ..-+.+...-..+ .+.
T Consensus 12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~C----~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGFC----HSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC----HHHHHHHcCCCCCEEEEecC
Confidence 34555555333 23567889999999999999988764211110000 11111 0000010000000 000
Q ss_pred -ccccccHHHHHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecch-HHhhccCCCCce
Q 002750 266 -NLEKMREEDLERCLYQSL-----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIR-EVAERSDERTHA 336 (885)
Q Consensus 266 -~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~~~~~~ 336 (885)
....+..+++.+ +.+.+ .+.+=++|+|+++. ......+...+..-+.++.+|++|.+. .+.....+....
T Consensus 83 ~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 83 KEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred cCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 011234455443 33332 23445889999974 467888888888766777777666644 444444566788
Q ss_pred eecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCChHHHHHHHHHHH
Q 002750 337 YELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLSKKKPQEWRIVRDHIW 406 (885)
Q Consensus 337 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~ 406 (885)
+.+.+++.++..+.+.... . . ....++..++|.|+....+ +.......+..+...+.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~--~-----~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~l~ 218 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKGQG---I--T-----VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQLV 218 (319)
T ss_pred EeCCCCCHHHHHHHHHHcC---C--c-----hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHHHH
Confidence 9999999999999886531 1 1 1356788999999976544 22333334444444443
No 175
>PRK10536 hypothetical protein; Provisional
Probab=97.41 E-value=0.00081 Score=67.17 Aligned_cols=132 Identities=12% Similarity=0.207 Sum_probs=74.9
Q ss_pred ccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEec----ccc-----ccHHH--
Q 002750 182 NVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSV----SQE-----YRTED-- 250 (885)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~-----~~~~~-- 250 (885)
.+.++......+..++.. ..+|.++|++|.|||+||..+..+....+.|+.++-..- ++. -+.++
T Consensus 56 ~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 456788888888888854 249999999999999999998775322344554443321 111 01111
Q ss_pred --HHHHHHHHhcCCCCCccccccHHHHHHHH-----------HHHhcCceE---EEEEecCCCHHHHHHHHhhCCCCCCC
Q 002750 251 --LLMRIINSFNIDSPSNLEKMREEDLERCL-----------YQSLQGYSY---LVVIDDVWQKETWESLKRAFPDSKNG 314 (885)
Q Consensus 251 --~~~~il~~l~~~~~~~~~~~~~~~~~~~l-----------~~~l~~~r~---LlVlDdv~~~~~~~~l~~~l~~~~~g 314 (885)
.+.-+...+..-.. .+.+...+ ..++++..+ +||+|++.+.+. ..+...+...+.+
T Consensus 132 ~p~~~pi~D~L~~~~~-------~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~ 203 (262)
T PRK10536 132 APYFRPVYDVLVRRLG-------ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHhC-------hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCC
Confidence 11222222211000 01111111 224566655 999999986543 3444445556789
Q ss_pred cEEEEEecchH
Q 002750 315 SRVILTTRIRE 325 (885)
Q Consensus 315 s~iiiTtR~~~ 325 (885)
|++|+|--..+
T Consensus 204 sk~v~~GD~~Q 214 (262)
T PRK10536 204 VTVIVNGDITQ 214 (262)
T ss_pred CEEEEeCChhh
Confidence 99999976443
No 176
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.40 E-value=0.00072 Score=79.55 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=88.2
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcc---ccccc-ceeEEEeccccccHHHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHND---VKHKF-ACCAWVSVSQEYRTEDLLMRII 256 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~~~il 256 (885)
+.++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ ++.+|.. +.. .++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~ll 254 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLL 254 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHh
Confidence 458999999999999987643 23446899999999999999886521 11111 3444421 111 111
Q ss_pred HHhcCCCCCccccccHHHHHHHHHHHh-cCceEEEEEecCCCH----------HHHHHHHhhCCCCCCCcEEEEEecchH
Q 002750 257 NSFNIDSPSNLEKMREEDLERCLYQSL-QGYSYLVVIDDVWQK----------ETWESLKRAFPDSKNGSRVILTTRIRE 325 (885)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~iiiTtR~~~ 325 (885)
. .... .. +.+.....+.+.+ +..+.+|++|++... .+...+..++... ..-++|-+|...+
T Consensus 255 a---G~~~---~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E 326 (758)
T PRK11034 255 A---GTKY---RG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQE 326 (758)
T ss_pred c---ccch---hh-hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHH
Confidence 1 0000 00 1222222233333 345679999998632 2222333332222 2355666665554
Q ss_pred Hhhcc------CCCCceeecCCCChhhHHHHHHHHH
Q 002750 326 VAERS------DERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 326 v~~~~------~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
..... ......+.++..+.++..+++....
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 32211 1234678999999999999998654
No 177
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.40 E-value=0.0026 Score=75.89 Aligned_cols=116 Identities=12% Similarity=0.200 Sum_probs=66.4
Q ss_pred cccccccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE-------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLM 253 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (885)
..++|.+..++.+...+... +....++.++|++|+|||++|+.++... +...+.++.++.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----
Confidence 45789888888888887632 1234578899999999999999998762 2234555554422111
Q ss_pred HHHHHhcCCCCCccccccHHHHHHHHHHHhcC-ceEEEEEecCCC--HHHHHHHHhhCCC
Q 002750 254 RIINSFNIDSPSNLEKMREEDLERCLYQSLQG-YSYLVVIDDVWQ--KETWESLKRAFPD 310 (885)
Q Consensus 254 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~--~~~~~~l~~~l~~ 310 (885)
.+...++.+.. ....+.. ..+.+.++. ..-+++||+++. .+.+..+...+..
T Consensus 525 ~~~~lig~~~g--yvg~~~~---~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 525 TVSRLIGAPPG--YVGFEQG---GLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred cHHHHhcCCCC--Ccccchh---hHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 11111121111 1111111 122333332 335999999974 4667777776653
No 178
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.39 E-value=0.0019 Score=78.32 Aligned_cols=155 Identities=11% Similarity=0.122 Sum_probs=86.1
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccc---c-cceeEE-EeccccccHHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKH---K-FACCAW-VSVSQEYRTEDLLMRI 255 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~-f~~~~w-v~~~~~~~~~~~~~~i 255 (885)
+.++||+.++.+++..|.... ..-+.++|++|+|||++|+.+.++..... . ....+| ++++ .+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~----------~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG----------AL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH----------HH
Confidence 458999999999999996653 34555899999999999999887621110 0 122233 2211 11
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHHHh-c-CceEEEEEecCCCHH---------HHHHHHhhCCCCCCCcEEEEEecch
Q 002750 256 INSFNIDSPSNLEKMREEDLERCLYQSL-Q-GYSYLVVIDDVWQKE---------TWESLKRAFPDSKNGSRVILTTRIR 324 (885)
Q Consensus 256 l~~l~~~~~~~~~~~~~~~~~~~l~~~l-~-~~r~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iiiTtR~~ 324 (885)
+. .... .. +.+.....+.+.+ + +++.+|++|++.... +...+..+... ...-++|-+|...
T Consensus 241 ~a---~~~~---~g-~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~ 312 (852)
T TIGR03346 241 IA---GAKY---RG-EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLD 312 (852)
T ss_pred hh---cchh---hh-hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHH
Confidence 10 0000 00 1222222222222 2 468999999986431 11222222212 2234566666655
Q ss_pred HHhhcc------CCCCceeecCCCChhhHHHHHHHHH
Q 002750 325 EVAERS------DERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 325 ~v~~~~------~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
+.-... ......+.++..+.++...++....
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 442211 1234568899999999999887654
No 179
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.36 E-value=0.0023 Score=77.30 Aligned_cols=156 Identities=12% Similarity=0.128 Sum_probs=85.4
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc---ccc-ce-eEEEeccccccHHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVK---HKF-AC-CAWVSVSQEYRTEDLLMRI 255 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~f-~~-~~wv~~~~~~~~~~~~~~i 255 (885)
+.++||+.++.++++.|.... ..-+.++|++|+|||++|+.+....... ... .. +++++++.-
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l---------- 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL---------- 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh----------
Confidence 468999999999999997653 3456699999999999999998762111 011 22 233332210
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHHHh-cCceEEEEEecCCCHH---------HHHHHHhhCCCCCCCcEEEEEecchH
Q 002750 256 INSFNIDSPSNLEKMREEDLERCLYQSL-QGYSYLVVIDDVWQKE---------TWESLKRAFPDSKNGSRVILTTRIRE 325 (885)
Q Consensus 256 l~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iiiTtR~~~ 325 (885)
+... .. ...-...+...+.+.. .+.+.+|++|++.... +...+..+... ...-++|-+|...+
T Consensus 246 ~ag~---~~---~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~g~l~~IgaTt~~e 318 (857)
T PRK10865 246 VAGA---KY---RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDE 318 (857)
T ss_pred hhcc---ch---hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-cCCCeEEEcCCCHH
Confidence 0000 00 0001112222222222 2567899999986431 12222222221 22456676666555
Q ss_pred Hhhcc------CCCCceeecCCCChhhHHHHHHHHH
Q 002750 326 VAERS------DERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 326 v~~~~------~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
..... ......+.+...+.++...+++...
T Consensus 319 ~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 42111 1223456677778899988887654
No 180
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=7.7e-06 Score=71.20 Aligned_cols=103 Identities=23% Similarity=0.226 Sum_probs=65.6
Q ss_pred CccEEEEeccCCCC--CChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeecCCCcceEEcCCcccccccee
Q 002750 781 NLECLSLEDSNLDD--DPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVDELEEWQVEEGAMPRLRGLR 858 (885)
Q Consensus 781 ~L~~L~L~~~~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ 858 (885)
.+-.++|++|.+-. +.+..+.....|+..+|++|.+..... .....||.+..|++..|.+.++|.+..+||.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~-kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPK-KFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCH-HHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 44556777776532 222334445556666777776653211 112356777788888888888887777888888888
Q ss_pred ecccccCCCCccccCCCCCCCCCCCC
Q 002750 859 IPEHLKSRIPERLRSIPPPAEGECEE 884 (885)
Q Consensus 859 l~~c~~~~lp~~l~~L~~L~~~~c~~ 884 (885)
+++|++...|..+-.|.+|...+.|+
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCC
Confidence 88888866666655566666666554
No 181
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.005 Score=66.08 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=89.3
Q ss_pred cccccccccccHHH-HHHHHhc-CCCCcEEEEEEecCCchHHHHHHHHhcCcccccccc--eeEEEeccccccHHHHHHH
Q 002750 179 VEENVVGFEDDANK-LLAHLLK-EDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFA--CCAWVSVSQEYRTEDLLMR 254 (885)
Q Consensus 179 ~~~~~vGr~~~~~~-l~~~L~~-~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 254 (885)
.+..++|-...... +...+.+ .+.....+.|+|+.|.|||.|++++.+. ...+.. .+++++ .+.....
T Consensus 86 FdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~------se~f~~~ 157 (408)
T COG0593 86 FDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT------SEDFTND 157 (408)
T ss_pred hhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc------HHHHHHH
Confidence 34445665444332 2222322 2235788999999999999999999987 333443 344443 3344444
Q ss_pred HHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH---HHHHH-HHhhCCC-CCCCcEEEEEecchHH---
Q 002750 255 IINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK---ETWES-LKRAFPD-SKNGSRVILTTRIREV--- 326 (885)
Q Consensus 255 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iiiTtR~~~v--- 326 (885)
++..+... -...+++.. .-=++++||++-. +.|+. +...+.. ...|-.||+|++...-
T Consensus 158 ~v~a~~~~------------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 158 FVKALRDN------------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred HHHHHHhh------------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 44443221 112233333 1228899998742 22222 2222221 1223389999974421
Q ss_pred ------hhccCCCCceeecCCCChhhHHHHHHHHHhcCC
Q 002750 327 ------AERSDERTHAYELPFLRPDESWKLFCEKAFQSF 359 (885)
Q Consensus 327 ------~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 359 (885)
.... ....++++.+.+.+....++.+++....
T Consensus 224 ~~~~rL~SR~-~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 224 GLEDRLRSRL-EWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred cccHHHHHHH-hceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 2222 3457899999999999999999775544
No 182
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.004 Score=66.32 Aligned_cols=178 Identities=11% Similarity=0.064 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCC-----C
Q 002750 190 ANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDS-----P 264 (885)
Q Consensus 190 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~ 264 (885)
-+++...+..+. -.....+.|+.|+||+++|..+.....-...-+.. .++.. ..-+.+.. ...+. +
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg~C----~sC~~~~~-g~HPD~~~i~p 81 (334)
T PRK07993 11 YEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCGHC----RGCQLMQA-GTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHHc-CCCCCEEEEec
Confidence 345566554432 35678899999999999999886542111100000 11111 00011100 00000 0
Q ss_pred C-ccccccHHHHHHHHHHHh----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecch-HHhhccCCCCce
Q 002750 265 S-NLEKMREEDLERCLYQSL----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIR-EVAERSDERTHA 336 (885)
Q Consensus 265 ~-~~~~~~~~~~~~~l~~~l----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~~~~~~ 336 (885)
. ....+..+++.+.....- .+++=++|+|+++. ......+...+..-+.++.+|++|.+. .+...+.+....
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 0 001244555544333221 35566899999974 467788888888766777777776654 344333455678
Q ss_pred eecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 337 YELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 337 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
+.+.++++++..+.+.... + . + .+.+..++..++|.|...
T Consensus 162 ~~~~~~~~~~~~~~L~~~~-~-~--~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV-T-M--S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc-C-C--C---HHHHHHHHHHcCCCHHHH
Confidence 8999999999998886542 1 1 1 234678899999999644
No 183
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.31 E-value=0.0025 Score=60.34 Aligned_cols=136 Identities=15% Similarity=0.187 Sum_probs=75.4
Q ss_pred cccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccc------------------ccceeEEEeccccc
Q 002750 185 GFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKH------------------KFACCAWVSVSQEY 246 (885)
Q Consensus 185 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~------------------~f~~~~wv~~~~~~ 246 (885)
|-+...+.+.+.+..+ .-...+.++|+.|+||+|+|..+.+...-.. ......|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 3445556666666444 2345678999999999999998876421111 1122233322211
Q ss_pred cHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEE
Q 002750 247 RTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL-----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVIL 319 (885)
Q Consensus 247 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iii 319 (885)
......+++. .+.+.+ .+++=++|+|+++. .+.+..++..+..-+.++++|+
T Consensus 79 --------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 79 --------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp --------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred --------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 0022333333 233332 23455899999985 5778888888887778899988
Q ss_pred EecchH-HhhccCCCCceeecCCCC
Q 002750 320 TTRIRE-VAERSDERTHAYELPFLR 343 (885)
Q Consensus 320 TtR~~~-v~~~~~~~~~~~~l~~L~ 343 (885)
+|++.. +..-.......+.+.++|
T Consensus 138 ~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EES-GGGS-HHHHTTSEEEEE----
T ss_pred EECChHHChHHHHhhceEEecCCCC
Confidence 888654 332223445666666654
No 184
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.30 E-value=0.0016 Score=74.08 Aligned_cols=174 Identities=16% Similarity=0.165 Sum_probs=94.1
Q ss_pred ccccccccccHHHHHHHHh---c-------CCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHH
Q 002750 180 EENVVGFEDDANKLLAHLL---K-------EDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTE 249 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (885)
-++++|.+..++++.+.+. . +....+-+.++|++|+|||++|+.+++.. ... ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----H
Confidence 3467888877766655442 1 11234558899999999999999998762 222 233221 1
Q ss_pred HHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH------------HHHHH----HHhhCCC--C
Q 002750 250 DLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK------------ETWES----LKRAFPD--S 311 (885)
Q Consensus 250 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~------------~~~~~----l~~~l~~--~ 311 (885)
++. ..... .....+...+.......+.+|+|||++.. ..+.. +...+.. .
T Consensus 123 ~~~----~~~~g--------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 123 DFV----EMFVG--------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HHH----HHHhc--------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 111 11100 11223333344444556789999998542 11222 2222221 2
Q ss_pred CCCcEEEEEecchHHhhc-c---CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCc
Q 002750 312 KNGSRVILTTRIREVAER-S---DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGL 379 (885)
Q Consensus 312 ~~gs~iiiTtR~~~v~~~-~---~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 379 (885)
..+..||.||........ . +--...+.++..+.++-.+++..+........ ......+++.+.|.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~ 259 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGF 259 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCC
Confidence 234556666665432211 1 11235788888899888999988764432211 12244777777764
No 185
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.30 E-value=0.00015 Score=67.94 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=42.4
Q ss_pred CCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeecCCCcceEE--cCCccccccc
Q 002750 779 LPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVDELEEWQV--EEGAMPRLRG 856 (885)
Q Consensus 779 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~ 856 (885)
+.+...++|++|.+.. .+.|.+++.|..|.|++|.++..... ....+|+|+.|.|.+|+|..+.. ....+|+|++
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 3455556666665432 23455556666666655555532211 12235556666666555555421 1234566666
Q ss_pred eeeccccc
Q 002750 857 LRIPEHLK 864 (885)
Q Consensus 857 L~l~~c~~ 864 (885)
|.+-+|+.
T Consensus 118 Ltll~Npv 125 (233)
T KOG1644|consen 118 LTLLGNPV 125 (233)
T ss_pred eeecCCch
Confidence 66666655
No 186
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=7.8e-05 Score=86.63 Aligned_cols=102 Identities=20% Similarity=0.140 Sum_probs=65.3
Q ss_pred CccceeEEeeccchhhhHHHhhhHHhHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCCCc
Q 002750 556 NLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNLPP 635 (885)
Q Consensus 556 ~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~ 635 (885)
..+|++|.+.|...- ..-| +...-..+|.|+.|.+.+-. +...++-.-..++++|++||+|+++|+.+ .
T Consensus 121 r~nL~~LdI~G~~~~--s~~W--~~kig~~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~ 189 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGW--PKKIGTMLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTNISNL-S 189 (699)
T ss_pred HHhhhhcCccccchh--hccH--HHHHhhhCcccceEEecCce------ecchhHHHHhhccCccceeecCCCCccCc-H
Confidence 456777777664321 1222 33455677888888887766 43223334456778888888888888877 6
Q ss_pred cccCCCCccEEecCC-CcccC--Chhhccccccccc
Q 002750 636 SIEKLQRLQTLDLSD-TLCGI--PTEISKLTELRHL 668 (885)
Q Consensus 636 ~i~~L~~L~~L~Ls~-~~~~l--p~~i~~L~~L~~L 668 (885)
+++.|++||+|.+++ ....- -.++.+|++|++|
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 778888888888777 44432 2356677777777
No 187
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=1.5e-05 Score=87.85 Aligned_cols=209 Identities=22% Similarity=0.294 Sum_probs=116.9
Q ss_pred HhHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCCCccccCC-CCccEEecCCCcccCChh
Q 002750 580 RWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNLPPSIEKL-QRLQTLDLSDTLCGIPTE 658 (885)
Q Consensus 580 ~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L-~~L~~L~Ls~~~~~lp~~ 658 (885)
..++.-++.+.+|.+-... -.+-.=|-.|..+..||.|.|+++.+...- ++..+ ..|++|.-.
T Consensus 77 q~i~d~lqkt~~lkl~~~p------a~~pt~pi~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LIC~--------- 140 (1096)
T KOG1859|consen 77 QRILDFLQKTKVLKLLPSP------ARDPTEPISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLICH--------- 140 (1096)
T ss_pred HHHHHHHhhheeeeecccC------CCCCCCCceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhhhh---------
Confidence 3444444555666665544 211011556778899999999999877632 22222 133333221
Q ss_pred hccccccccccccccccccccCccCCCccCcccccccccc----CCcccCCCCeeEeecccccchhhccchhhhhccCCC
Q 002750 659 ISKLTELRHLIGNFSGYLPIENLTNLRTLKYVSVESWNRL----SPDKLINLRELHIEDKEWTREKVLFTFNSIAKLKSL 734 (885)
Q Consensus 659 i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L 734 (885)
..+..|+++.....+.+. +-.---.|...+++.|... .+.-++.|+.|+++.|++... +.+..+.+|
T Consensus 141 -~Sl~Al~~v~ascggd~~--ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~L 211 (1096)
T KOG1859|consen 141 -NSLDALRHVFASCGGDIS--NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV------DNLRRLPKL 211 (1096)
T ss_pred -ccHHHHHHHHHHhccccc--cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh------HHHHhcccc
Confidence 234455555221111110 0011112333444444332 355678888999998876543 556777888
Q ss_pred ceEEeeecCCccccccccCCCCCCcceEEEeee-cCCCChhhhhcCCCccEEEEeccCCCC-CChhHHhcCcCCCceEee
Q 002750 735 QILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK-IEKLPEDIHVILPNLECLSLEDSNLDD-DPMPELEKMSNLVILDLS 812 (885)
Q Consensus 735 ~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~lp~~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~ 812 (885)
+.|+++++.....+-+. ...+ .|..|+++|| +.++- .+.+ +.+|..||+++|-+.+ .-+..+..|..|+.|+|.
T Consensus 212 khLDlsyN~L~~vp~l~-~~gc-~L~~L~lrnN~l~tL~-gie~-LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 212 KHLDLSYNCLRHVPQLS-MVGC-KLQLLNLRNNALTTLR-GIEN-LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred cccccccchhccccccc-hhhh-hheeeeecccHHHhhh-hHHh-hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence 88888776542221111 1122 3888888888 44443 4555 4888888998887654 234456777788888888
Q ss_pred ccccC
Q 002750 813 YDSYS 817 (885)
Q Consensus 813 ~n~~~ 817 (885)
+|.+-
T Consensus 288 GNPl~ 292 (1096)
T KOG1859|consen 288 GNPLC 292 (1096)
T ss_pred CCccc
Confidence 88653
No 188
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.26 E-value=0.01 Score=71.54 Aligned_cols=134 Identities=16% Similarity=0.192 Sum_probs=73.1
Q ss_pred ccccccccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHH
Q 002750 180 EENVVGFEDDANKLLAHLLKE-------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLL 252 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 252 (885)
...++|.+..++.+.+.+... .....++.++|++|+|||.+|+.+... .-+.....+-++++...+.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA---- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----
Confidence 356899999999999988532 223458899999999999999988765 2111122222232221110
Q ss_pred HHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCC--HHHHHHHHhhCCCCC-----------CCcEEEE
Q 002750 253 MRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQ--KETWESLKRAFPDSK-----------NGSRVIL 319 (885)
Q Consensus 253 ~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~-----------~gs~iii 319 (885)
.-...+....+.-........+...++ +...-+|+||++.. .+.++.+...+..+. ..+-||+
T Consensus 639 -~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 639 -HTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred -hhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 111122121110001001112222222 23445999999973 456667766665432 3566778
Q ss_pred Eecc
Q 002750 320 TTRI 323 (885)
Q Consensus 320 TtR~ 323 (885)
||..
T Consensus 715 TSNl 718 (852)
T TIGR03345 715 TSNA 718 (852)
T ss_pred eCCC
Confidence 8763
No 189
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.26 E-value=0.0035 Score=64.81 Aligned_cols=54 Identities=26% Similarity=0.293 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHH
Q 002750 190 ANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLL 252 (885)
Q Consensus 190 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 252 (885)
++++..++..+ +-|.|.|++|+|||++|+.+.+. ... ..+.+++....+..+++
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHHh
Confidence 34455555332 35669999999999999999864 222 23456666555544443
No 190
>PRK08118 topology modulation protein; Reviewed
Probab=97.24 E-value=0.00018 Score=68.50 Aligned_cols=34 Identities=38% Similarity=0.676 Sum_probs=27.6
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccc-cccceeEE
Q 002750 206 VISIFGMGGLGKTTLARKLYHHNDVK-HKFACCAW 239 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 239 (885)
-|.|+|++|+||||+|+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999874443 45677776
No 191
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.22 E-value=0.019 Score=69.86 Aligned_cols=132 Identities=17% Similarity=0.275 Sum_probs=74.5
Q ss_pred cccccccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE-------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLM 253 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (885)
..++|.+..++.+...+... .....++.++|++|+|||++|+.+... ..+.-...+.++++...... .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~-~-- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKH-S-- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccc-h--
Confidence 46899999999999988642 112467889999999999999999875 22222233444444322211 1
Q ss_pred HHHHHhcCCCCCccccccHHHHHHHHHHHhcC-ceEEEEEecCCC--HHHHHHHHhhCCCCC-----------CCcEEEE
Q 002750 254 RIINSFNIDSPSNLEKMREEDLERCLYQSLQG-YSYLVVIDDVWQ--KETWESLKRAFPDSK-----------NGSRVIL 319 (885)
Q Consensus 254 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~--~~~~~~l~~~l~~~~-----------~gs~iii 319 (885)
...+....+ ...+.+. ...+.+.++. ..-+|+||++.. .+.+..+...+..+. ..+-||+
T Consensus 640 --~~~l~g~~~-g~~g~~~---~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 640 --VARLIGAPP-GYVGYEE---GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred --HHHhcCCCC-CccCccc---ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 111111111 0111110 0122233322 234899999974 567777777765431 2344777
Q ss_pred Eecc
Q 002750 320 TTRI 323 (885)
Q Consensus 320 TtR~ 323 (885)
||..
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 8774
No 192
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.20 E-value=0.0007 Score=67.33 Aligned_cols=36 Identities=33% Similarity=0.464 Sum_probs=30.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceeEEEec
Q 002750 205 SVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSV 242 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 242 (885)
-.++|+|..|+||||++..+... ....|.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 35779999999999999999987 7778888877754
No 193
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.01 Score=61.08 Aligned_cols=183 Identities=16% Similarity=0.238 Sum_probs=105.7
Q ss_pred cccccccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE-----------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTE 249 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (885)
..+=|-++.+++|.+...-+ =..++=|.++|++|.|||-||++|+++ ....| +.+...
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH----
Confidence 34667898888888876321 124567889999999999999999998 44444 333221
Q ss_pred HHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh-cCceEEEEEecCCCH-------------HH---HHHHHhhCCC--
Q 002750 250 DLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL-QGYSYLVVIDDVWQK-------------ET---WESLKRAFPD-- 310 (885)
Q Consensus 250 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~-------------~~---~~~l~~~l~~-- 310 (885)
.+.+..-+. -..+++.+.+.- ...+..|++|.++.. +. .-++...+..
T Consensus 220 ----ElVqKYiGE---------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 ----ELVQKYIGE---------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred ----HHHHHHhcc---------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 122221111 122333333333 356789999988632 11 2233444443
Q ss_pred CCCCcEEEEEecchHHhhcc---CC-CCceeecCCCChhhHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCch----H
Q 002750 311 SKNGSRVILTTRIREVAERS---DE-RTHAYELPFLRPDESWKLFCEKAFQSFNA-DEGLEKLGREMLEKCGGLP----L 381 (885)
Q Consensus 311 ~~~gs~iiiTtR~~~v~~~~---~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P----l 381 (885)
.....|||..|...++..-. .+ -...++++.-+.+.-.++|.-+.-...-. .-. .+.+++.|.|.- .
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlk 362 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLK 362 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHH
Confidence 23568999988877655432 12 24567887666666677887776443322 122 344566666554 3
Q ss_pred HHHHHHhhhc
Q 002750 382 AIVVLGGLLS 391 (885)
Q Consensus 382 ai~~~~~~l~ 391 (885)
|+.+=|++++
T Consensus 363 aictEAGm~A 372 (406)
T COG1222 363 AICTEAGMFA 372 (406)
T ss_pred HHHHHHhHHH
Confidence 4555556555
No 194
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0031 Score=69.80 Aligned_cols=191 Identities=17% Similarity=0.147 Sum_probs=114.7
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHH--
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINS-- 258 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~-- 258 (885)
+++||-+.....|...+..+. -..--...|+-|+||||+|+-++....... | ...+.+..-...+.|-..
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCCc
Confidence 457999999999999886653 233455789999999999998876421111 1 111112222222222221
Q ss_pred hcCCCCCccccccHHHHHHHHHHHh----cCceEEEEEecCC--CHHHHHHHHhhCCCCCCCcEEEEEecchH-HhhccC
Q 002750 259 FNIDSPSNLEKMREEDLERCLYQSL----QGYSYLVVIDDVW--QKETWESLKRAFPDSKNGSRVILTTRIRE-VAERSD 331 (885)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~l~~~l----~~~r~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~ 331 (885)
+..-.-........+++.+.+.+.. +++-=+.|+|+|. ....|..+...+..-..+.+.|+.|.+.. +..-.-
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 0000000111113344443333332 3444589999996 45789999988887777887777776543 333223
Q ss_pred CCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchH
Q 002750 332 ERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPL 381 (885)
Q Consensus 332 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 381 (885)
...+.+.++.++.++-...+...+...... ..++...-|++..+|...
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKEGIN--IEEDALSLIARAAEGSLR 215 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCChh
Confidence 556889999999999988888877544332 225566677777777554
No 195
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.17 E-value=1.1e-05 Score=88.91 Aligned_cols=186 Identities=22% Similarity=0.241 Sum_probs=100.0
Q ss_pred CccccCCCCccEEecCC-CcccCChhhccc-cccccccccccccccccCccCCCccCccccc-cccccCCcccCCCCeeE
Q 002750 634 PPSIEKLQRLQTLDLSD-TLCGIPTEISKL-TELRHLIGNFSGYLPIENLTNLRTLKYVSVE-SWNRLSPDKLINLRELH 710 (885)
Q Consensus 634 p~~i~~L~~L~~L~Ls~-~~~~lp~~i~~L-~~L~~L~~~~~~~~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~ 710 (885)
|-+|-.+..|+.|.|++ ++... .++..+ ..|++| +... +++.|+.+--. ...+..-..+..|..-+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~L-------IC~~---Sl~Al~~v~ascggd~~ns~~Wn~L~~a~ 170 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKL-------ICHN---SLDALRHVFASCGGDISNSPVWNKLATAS 170 (1096)
T ss_pred CceeccccceeeEEecCcchhhh-hhhHHHHHhhhhh-------hhhc---cHHHHHHHHHHhccccccchhhhhHhhhh
Confidence 66777788899998887 54431 111111 112222 1111 22223222111 00111112344555666
Q ss_pred eecccccchhhccchhhhhccCCCceEEeeecCCccccccccCCCCCCcceEEEeee-cCCCChhhhhcCCCccEEEEec
Q 002750 711 IEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK-IEKLPEDIHVILPNLECLSLED 789 (885)
Q Consensus 711 l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~lp~~~~~~l~~L~~L~L~~ 789 (885)
.++|.+.... .++.-++.|+.|+++.+..... ..+..++.|++|+|+.| +..+|..-... ..|+.|+|.+
T Consensus 171 fsyN~L~~mD-----~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g-c~L~~L~lrn 241 (1096)
T KOG1859|consen 171 FSYNRLVLMD-----ESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVG-CKLQLLNLRN 241 (1096)
T ss_pred cchhhHHhHH-----HHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhh-hhheeeeecc
Confidence 6666442211 5555667777777775543222 24566778888888876 66666433332 4588888888
Q ss_pred cCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeecCCC
Q 002750 790 SNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVDEL 841 (885)
Q Consensus 790 ~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l 841 (885)
|.++. +-.+.+|.+|..|+|++|.+.+-.-......+..|+.|.|..|.+
T Consensus 242 N~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 87753 346677888888888888765421111123355666777765554
No 196
>PRK08181 transposase; Validated
Probab=97.17 E-value=0.001 Score=68.15 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=26.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceeEEEec
Q 002750 205 SVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSV 242 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 242 (885)
.-+.++|++|+|||.||..+.+. .......+.|+++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT 142 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH
Confidence 45899999999999999999875 2222334566653
No 197
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.15 E-value=0.0016 Score=68.79 Aligned_cols=107 Identities=12% Similarity=0.084 Sum_probs=65.1
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccce-eEEEecccc-ccHHHHHHHHHHHhcCCCC--
Q 002750 189 DANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFAC-CAWVSVSQE-YRTEDLLMRIINSFNIDSP-- 264 (885)
Q Consensus 189 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~il~~l~~~~~-- 264 (885)
...++++.+..-. +..-+.|+|++|+|||||++.+++... ..+-+. ++|+.+.+. -...++.+.+...+.....
T Consensus 119 ~~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 4456788776543 334568999999999999999887621 112233 467777654 4567788888776654321
Q ss_pred CccccccHHHHHHHHHHHh--cCceEEEEEecCCC
Q 002750 265 SNLEKMREEDLERCLYQSL--QGYSYLVVIDDVWQ 297 (885)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~ 297 (885)
................+++ ++++++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 0111111222222233333 68999999999953
No 198
>PRK12377 putative replication protein; Provisional
Probab=97.13 E-value=0.0016 Score=65.93 Aligned_cols=38 Identities=24% Similarity=0.152 Sum_probs=28.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecc
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVS 243 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 243 (885)
...+.++|++|+|||+||..+++.. ......++++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH
Confidence 4678999999999999999999873 3333345676643
No 199
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.11 E-value=1.9e-05 Score=81.81 Aligned_cols=131 Identities=20% Similarity=0.218 Sum_probs=80.7
Q ss_pred CCCCCCcceEEEeee--cCCCChh-hhhcCCCccEEEEeccC-CCCCChhHH-hcCcCCCceEeeccccCC-eEEeecCC
Q 002750 753 LCDCPCLSDLRLRGK--IEKLPED-IHVILPNLECLSLEDSN-LDDDPMPEL-EKMSNLVILDLSYDSYSG-KKLFCTAK 826 (885)
Q Consensus 753 l~~~~~L~~L~l~~~--~~~lp~~-~~~~l~~L~~L~L~~~~-l~~~~~~~l-~~l~~L~~L~L~~n~~~~-~~~~~~~~ 826 (885)
-..+..|+.|..+++ ++..+-| ++...++|+.|-++.|+ ++..-...+ .+.+.|+.|++..+-... ..+.....
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 345677888888775 3333322 34446889999999885 444334444 447888888886654322 12333345
Q ss_pred CCcccceeEee-cCCCcce-----EEcCCccccccceeeccccc--CCCCc---cccCCCCCCCCCCC
Q 002750 827 GFPRLEILQLL-VDELEEW-----QVEEGAMPRLRGLRIPEHLK--SRIPE---RLRSIPPPAEGECE 883 (885)
Q Consensus 827 ~~~~L~~L~l~-~~~l~~l-----~~~~~~~~~L~~L~l~~c~~--~~lp~---~l~~L~~L~~~~c~ 883 (885)
+.|.|+.|.++ |..++.- .....++..|+.|.+++||. ...-+ ...+|+++++.+|-
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 67888888888 6555543 22335678889999999988 21211 23466666666664
No 200
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.11 E-value=0.0014 Score=70.11 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=36.9
Q ss_pred hccCceeEEEeccccccccccccccCCCchhhcccccccEEEecC-CCCCCCCccccCCCCccEEecCC--CcccCCh
Q 002750 583 FTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRN-SPIDNLPPSIEKLQRLQTLDLSD--TLCGIPT 657 (885)
Q Consensus 583 ~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~-~~i~~lp~~i~~L~~L~~L~Ls~--~~~~lp~ 657 (885)
+..+++++.|++++|. +. .+|. + -.+|+.|.+++ +.++.+|..+ ..+|+.|++++ ++..+|.
T Consensus 48 ~~~~~~l~~L~Is~c~------L~--sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCD------IE--SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCC------Cc--ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 3445777777777776 66 6662 1 23577777776 3356666544 24677777765 2333444
No 201
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.11 E-value=0.0057 Score=66.00 Aligned_cols=141 Identities=17% Similarity=0.223 Sum_probs=82.7
Q ss_pred ccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccc-------------------ccceeEEEec
Q 002750 182 NVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKH-------------------KFACCAWVSV 242 (885)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 242 (885)
.++|-+....++..+..........+.++|++|+||||+|..+.+...-.. ....+..++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356777788888888875443344599999999999999999987521111 1122333333
Q ss_pred ccccc---HHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEE
Q 002750 243 SQEYR---TEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRV 317 (885)
Q Consensus 243 ~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 317 (885)
+.... ..+..+++.+...... ..++.-++++|+++.. +.-..+...+......+.+
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~-------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP-------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC-------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 33222 1222222222221110 0245669999999854 4556677777666677888
Q ss_pred EEEecch-HHhhccCCCCceeecCC
Q 002750 318 ILTTRIR-EVAERSDERTHAYELPF 341 (885)
Q Consensus 318 iiTtR~~-~v~~~~~~~~~~~~l~~ 341 (885)
|++|... .+..-.......+++.+
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCC
Confidence 8887733 33333334556677766
No 202
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.07 E-value=0.00022 Score=82.90 Aligned_cols=130 Identities=19% Similarity=0.247 Sum_probs=79.3
Q ss_pred CCCceEEeeecCCcccccccc-CCCCCCcceEEEeee-c--CCCChhhhhcCCCccEEEEeccCCCCCChhHHhcCcCCC
Q 002750 732 KSLQILSIKLSGERSFDLLQP-LCDCPCLSDLRLRGK-I--EKLPEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLV 807 (885)
Q Consensus 732 ~~L~~l~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~-~--~~lp~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 807 (885)
.+|+.|+++....-...++.. -.-+|+|++|.++|- + ..+-.-..+ +|||..||+|+++++. ...+++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~s-FpNL~sLDIS~TnI~n--l~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCAS-FPNLRSLDISGTNISN--LSGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhc-cCccceeecCCCCccC--cHHHhccccHH
Confidence 466777765432211122222 244789999999884 2 222222223 5999999999998864 37788999999
Q ss_pred ceEeeccccCCeEEeecCCCCcccceeEeecCCCcceE-------EcCCccccccceeeccccc
Q 002750 808 ILDLSYDSYSGKKLFCTAKGFPRLEILQLLVDELEEWQ-------VEEGAMPRLRGLRIPEHLK 864 (885)
Q Consensus 808 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-------~~~~~~~~L~~L~l~~c~~ 864 (885)
.|.+.+=.+.........-.+.+|+.|+++......-+ .....+|+|+.|+.++...
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 99986444433111112235889999999832222211 1223588899998888776
No 203
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.06 E-value=0.0076 Score=72.86 Aligned_cols=132 Identities=15% Similarity=0.248 Sum_probs=73.0
Q ss_pred cccccccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE-------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLM 253 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (885)
..++|.+..++.+...+... +....++.++|+.|+|||++|+.+.+.. .+.-...+.++++.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-hh---
Confidence 46889999999888887532 1123578899999999999999998652 11112334454443211 11
Q ss_pred HHHHHhcCCCCCccccccHHHHHHHHHHHhcC-ceEEEEEecCC--CHHHHHHHHhhCCCC----C-------CCcEEEE
Q 002750 254 RIINSFNIDSPSNLEKMREEDLERCLYQSLQG-YSYLVVIDDVW--QKETWESLKRAFPDS----K-------NGSRVIL 319 (885)
Q Consensus 254 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~--~~~~~~~l~~~l~~~----~-------~gs~iii 319 (885)
....+....+ ...+.+.. ..+.+.++. ..-+|+|||+. +.+.+..+...+..+ + ..+.||+
T Consensus 642 -~~~~LiG~~p-gy~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~ 716 (857)
T PRK10865 642 -SVSRLVGAPP-GYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM 716 (857)
T ss_pred -hHHHHhCCCC-cccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEE
Confidence 1222222111 11111111 112233322 23599999997 456777777666432 1 1233777
Q ss_pred Eecc
Q 002750 320 TTRI 323 (885)
Q Consensus 320 TtR~ 323 (885)
||..
T Consensus 717 TSN~ 720 (857)
T PRK10865 717 TSNL 720 (857)
T ss_pred eCCc
Confidence 8775
No 204
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.06 E-value=0.0011 Score=70.91 Aligned_cols=135 Identities=16% Similarity=0.108 Sum_probs=65.9
Q ss_pred cccCCCCeeEeecccccchhhccchhhhhcc-CCCceEEeeecCCccccccccCCCCCCcceEEEeee--cCCCChhhhh
Q 002750 701 DKLINLRELHIEDKEWTREKVLFTFNSIAKL-KSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK--IEKLPEDIHV 777 (885)
Q Consensus 701 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~lp~~~~~ 777 (885)
..+.+++.|++++|.+... ..+ .+|+.|.+..+... ..++..+ +++|++|.+++| +..+
T Consensus 49 ~~~~~l~~L~Is~c~L~sL---------P~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sL------ 110 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL---------PVLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGL------ 110 (426)
T ss_pred HHhcCCCEEEeCCCCCccc---------CCCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccccc------
Confidence 3456777777777744322 122 34666666543221 1122222 356777777765 2223
Q ss_pred cCCCccEEEEeccCCCCCChhHHhcC-cCCCceEeeccccCCeEEeecCCCC-cccceeEeecCCCcceEEcCCcccccc
Q 002750 778 ILPNLECLSLEDSNLDDDPMPELEKM-SNLVILDLSYDSYSGKKLFCTAKGF-PRLEILQLLVDELEEWQVEEGAMPRLR 855 (885)
Q Consensus 778 ~l~~L~~L~L~~~~l~~~~~~~l~~l-~~L~~L~L~~n~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~l~~~~~~~~~L~ 855 (885)
+++|+.|++..+.... +..+ ++|+.|.+.++.... .......+ ++|++|.++.+....+|.. -.++|+
T Consensus 111 -P~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~--~~~lp~~LPsSLk~L~Is~c~~i~LP~~--LP~SLk 180 (426)
T PRK15386 111 -PESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPEN--QARIDNLISPSLKTLSLTGCSNIILPEK--LPESLQ 180 (426)
T ss_pred -ccccceEEeCCCCCcc-----cccCcchHhheecccccccc--ccccccccCCcccEEEecCCCcccCccc--ccccCc
Confidence 3566777776554321 2233 346666664322110 00001123 4688888873333333321 225788
Q ss_pred ceeecccc
Q 002750 856 GLRIPEHL 863 (885)
Q Consensus 856 ~L~l~~c~ 863 (885)
.|.++.|.
T Consensus 181 ~L~ls~n~ 188 (426)
T PRK15386 181 SITLHIEQ 188 (426)
T ss_pred EEEecccc
Confidence 88887663
No 205
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.00 E-value=0.0058 Score=61.91 Aligned_cols=129 Identities=22% Similarity=0.244 Sum_probs=71.0
Q ss_pred HHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccc----ccceeEEEeccccccHHHHHHHHHHHhcCCCC------
Q 002750 195 AHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKH----KFACCAWVSVSQEYRTEDLLMRIINSFNIDSP------ 264 (885)
Q Consensus 195 ~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------ 264 (885)
+.|..+=+...++.|+|++|+|||++|..++......+ .=..++|++....++...+. .+.........
T Consensus 10 ~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i 88 (226)
T cd01393 10 ELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNI 88 (226)
T ss_pred HHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccE
Confidence 33333334568999999999999999999875521111 11467899987776655443 33333222110
Q ss_pred CccccccHHHHHHHHHHHhc----CceEEEEEecCCCH---------------HHHHHHHhhCCC--CCCCcEEEEEecc
Q 002750 265 SNLEKMREEDLERCLYQSLQ----GYSYLVVIDDVWQK---------------ETWESLKRAFPD--SKNGSRVILTTRI 323 (885)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~l~----~~r~LlVlDdv~~~---------------~~~~~l~~~l~~--~~~gs~iiiTtR~ 323 (885)
.-....+.+++...+.+... .+.-++|+|.+... .....+...+.. ...+..||+|+..
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~ 168 (226)
T cd01393 89 YVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQV 168 (226)
T ss_pred EEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEE
Confidence 00111234555555554432 34459999997431 111222222322 2467889998864
Q ss_pred h
Q 002750 324 R 324 (885)
Q Consensus 324 ~ 324 (885)
.
T Consensus 169 ~ 169 (226)
T cd01393 169 R 169 (226)
T ss_pred e
Confidence 3
No 206
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.99 E-value=0.011 Score=70.87 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=95.7
Q ss_pred cccccccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE-----------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTE 249 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (885)
.++.|.+..++++.+.+.-. -...+-+.++|++|+|||++|+.+++. ....| +.+..+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f---i~v~~~------ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF---IAVRGP------ 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH------
Confidence 45678888887777765321 123455889999999999999999987 33333 222211
Q ss_pred HHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH--------------HHHHHHHhhCCC--CCC
Q 002750 250 DLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK--------------ETWESLKRAFPD--SKN 313 (885)
Q Consensus 250 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--------------~~~~~l~~~l~~--~~~ 313 (885)
+ ++.... ......+...+...-...+.+|++|+++.. .....+...+.. ...
T Consensus 522 ~----l~~~~v--------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 E----ILSKWV--------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred H----Hhhccc--------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 1 111110 111222333333333566789999998632 122334444442 233
Q ss_pred CcEEEEEecchHHhhcc--C-C-CCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCch
Q 002750 314 GSRVILTTRIREVAERS--D-E-RTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLP 380 (885)
Q Consensus 314 gs~iiiTtR~~~v~~~~--~-~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (885)
+.-||.||...+..... . + -...+.++..+.++-.++|..+.....-... .-...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~---~~l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED---VDLEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHcCCCC
Confidence 55566677655433221 1 1 2456788888989999998766533221111 11455667777654
No 207
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.98 E-value=0.0064 Score=67.97 Aligned_cols=176 Identities=11% Similarity=0.096 Sum_probs=91.1
Q ss_pred cccccccccHHHHHHHH---hc-----CCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHH
Q 002750 181 ENVVGFEDDANKLLAHL---LK-----EDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLL 252 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L---~~-----~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 252 (885)
+++.|.+..++.+.... .. +-...+-|.++|++|+|||.+|+.+.+. ....| +-++.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH--------
Confidence 35667766665554321 11 1124567889999999999999999986 22222 1122211
Q ss_pred HHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH----------H----HHHHHHhhCCCCCCCcEEE
Q 002750 253 MRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK----------E----TWESLKRAFPDSKNGSRVI 318 (885)
Q Consensus 253 ~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~----------~----~~~~l~~~l~~~~~gs~ii 318 (885)
+..... +.+...+.+.+...-...+.+|++|+++.. . ....+...+.....+.-||
T Consensus 295 --l~~~~v--------Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 295 --LFGGIV--------GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred --hccccc--------ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 111000 011222333333333457789999998632 0 1122333333334455566
Q ss_pred EEecchHHhh-cc---CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCch
Q 002750 319 LTTRIREVAE-RS---DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLP 380 (885)
Q Consensus 319 iTtR~~~v~~-~~---~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 380 (885)
.||....... .+ +--...+.++.-+.++-.++|..+........ .-..-...+++.+.|.-
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCC
Confidence 6776543211 11 11235678888889999999988774432110 00112455666665543
No 208
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.98 E-value=0.029 Score=62.90 Aligned_cols=205 Identities=14% Similarity=0.104 Sum_probs=125.9
Q ss_pred cccccccccccHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHhcC------cccccccceeEEEeccccccHH
Q 002750 179 VEENVVGFEDDANKLLAHLLKE---DPRRSVISIFGMGGLGKTTLARKLYHH------NDVKHKFACCAWVSVSQEYRTE 249 (885)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~------~~~~~~f~~~~wv~~~~~~~~~ 249 (885)
.+..+-+||.+..+|-..+..- +...+.+-|.|.+|+|||..+..|.+. ......|+ .+.|+.-.-..+.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 4566779999999998887532 244569999999999999999999874 12234454 3456655666788
Q ss_pred HHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhc-----CceEEEEEecCCCHHH--HHHHHhhCCC-CCCCcEEEEEe
Q 002750 250 DLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQ-----GYSYLVVIDDVWQKET--WESLKRAFPD-SKNGSRVILTT 321 (885)
Q Consensus 250 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVlDdv~~~~~--~~~l~~~l~~-~~~gs~iiiTt 321 (885)
++...|..++..... ......+.|..+.. .+..++++|+++..-. -+-+...|.+ ..++||++|-+
T Consensus 473 ~~Y~~I~~~lsg~~~------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 473 EIYEKIWEALSGERV------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHHhcccCcc------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 999999999987443 34444555655553 3558999999864311 1223333443 44677776654
Q ss_pred cch--HHhhcc-------CCCCceeecCCCChhhHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCchHHHHHHHhhh
Q 002750 322 RIR--EVAERS-------DERTHAYELPFLRPDESWKLFCEKAFQSFNA-DEGLEKLGREMLEKCGGLPLAIVVLGGLL 390 (885)
Q Consensus 322 R~~--~v~~~~-------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Plai~~~~~~l 390 (885)
=.. +..+.+ .-....+...|-+.++..++...+..+...- ....+-++++++.-.|..-.|+.+.-++.
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 321 111111 1123456777888888888887776544211 33444555555555555555555444433
No 209
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.012 Score=64.49 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=92.1
Q ss_pred cccccccccHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE----------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTED 250 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 250 (885)
.++-|.+..+.++.+.+..- -...+=|.++|++|.|||.||+.+++.. .-. ++.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vP-----f~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVP-----FLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCc-----eEeecch-----
Confidence 45778999888888877532 1245678899999999999999999873 322 3443321
Q ss_pred HHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH-------------HHHHHHHhhCCC---C---
Q 002750 251 LLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK-------------ETWESLKRAFPD---S--- 311 (885)
Q Consensus 251 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-------------~~~~~l~~~l~~---~--- 311 (885)
.|+... .+.+.+.+.+.+.+....-++++++|+++.. ....++...+.. .
T Consensus 258 ---eivSGv--------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 ---EIVSGV--------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ---hhhccc--------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 222222 2334566666667777888999999999742 123334444432 1
Q ss_pred CCCcEEEE-EecchHHhhcc---CCCCceeecCCCChhhHHHHHHHHHhcC
Q 002750 312 KNGSRVIL-TTRIREVAERS---DERTHAYELPFLRPDESWKLFCEKAFQS 358 (885)
Q Consensus 312 ~~gs~iii-TtR~~~v~~~~---~~~~~~~~l~~L~~~e~~~lf~~~~~~~ 358 (885)
+.+.-||= |+|...+.... +--...|.+.--++.+-.++++..+.+-
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l 377 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGL 377 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC
Confidence 22333333 44433322211 1123556777777777777777666433
No 210
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.96 E-value=0.0002 Score=70.03 Aligned_cols=110 Identities=17% Similarity=0.134 Sum_probs=71.0
Q ss_pred CCCCCcceEEEeee-cCCCChhh-----hhcCCCccEEEEeccCCCCCCh-----hHHhcCcCCCceEeeccccCCeEEe
Q 002750 754 CDCPCLSDLRLRGK-IEKLPEDI-----HVILPNLECLSLEDSNLDDDPM-----PELEKMSNLVILDLSYDSYSGKKLF 822 (885)
Q Consensus 754 ~~~~~L~~L~l~~~-~~~lp~~~-----~~~l~~L~~L~L~~~~l~~~~~-----~~l~~l~~L~~L~L~~n~~~~~~~~ 822 (885)
.+-|.|+......| +...|... ... .+|..+.+..|.+..... ..+..+.+|+.|+|..|.++-....
T Consensus 154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh-~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSKELSAALLESH-ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred ccCCCceEEEeccchhccCcHHHHHHHHHhh-cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence 34566777766655 44444322 222 589999999998864422 2346689999999999988743211
Q ss_pred ---ecCCCCcccceeEeecCCCcce-------EEcCCccccccceeeccccc
Q 002750 823 ---CTAKGFPRLEILQLLVDELEEW-------QVEEGAMPRLRGLRIPEHLK 864 (885)
Q Consensus 823 ---~~~~~~~~L~~L~l~~~~l~~l-------~~~~~~~~~L~~L~l~~c~~ 864 (885)
.....-+.|+.|.++.+-++.- .+....+|+|..|-..+|..
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 1122346689999985444421 23344679999999999877
No 211
>PRK04132 replication factor C small subunit; Provisional
Probab=96.96 E-value=0.018 Score=68.07 Aligned_cols=152 Identities=16% Similarity=0.095 Sum_probs=96.6
Q ss_pred cCCchHHHHHHHHhcCccccccc-ceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEE
Q 002750 212 MGGLGKTTLARKLYHHNDVKHKF-ACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLV 290 (885)
Q Consensus 212 ~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~Ll 290 (885)
|.++||||+|..++++. ....+ ..++-+++++....+ .+++++..+....+ . -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~-----~------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKP-----I------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC-----c------------CCCCCEEE
Confidence 88899999999999872 12222 235667777543433 33444443321111 0 01234699
Q ss_pred EEecCCCH--HHHHHHHhhCCCCCCCcEEEEEecch-HHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHH
Q 002750 291 VIDDVWQK--ETWESLKRAFPDSKNGSRVILTTRIR-EVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEK 367 (885)
Q Consensus 291 VlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~ 367 (885)
|+|+++.. +....+...+..-...+++|+++.+. .+..........+++.+++.++....+...+....-. .-++
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~e 712 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEE 712 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCHH
Confidence 99999854 57777887777655566676665544 3333334557889999999999998888766432211 1256
Q ss_pred HHHHHHHHcCCchHHHH
Q 002750 368 LGREMLEKCGGLPLAIV 384 (885)
Q Consensus 368 ~~~~i~~~~~g~Plai~ 384 (885)
....|++.++|.+..+.
T Consensus 713 ~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 713 GLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHcCCCHHHHH
Confidence 78899999999886443
No 212
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.96 E-value=0.0006 Score=65.59 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=25.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEec
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSV 242 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 242 (885)
..-+.++|++|+|||.||..+.+.. ..+=..+.|+++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~--~~~g~~v~f~~~ 83 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA--IRKGYSVLFITA 83 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh--ccCCcceeEeec
Confidence 4579999999999999999998762 222224566663
No 213
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.95 E-value=0.0029 Score=61.53 Aligned_cols=129 Identities=18% Similarity=0.220 Sum_probs=61.5
Q ss_pred ccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecc----ccc-----cHHH----HH
Q 002750 186 FEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVS----QEY-----RTED----LL 252 (885)
Q Consensus 186 r~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~-----~~~~----~~ 252 (885)
+..+-...++.|. ...++.+.|++|.|||.||....-+.-..+.|+.++++.-. +.. +.++ .+
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 4455566667775 34599999999999999999887664455788888777521 111 0000 11
Q ss_pred HHHHHHhcCCCCCccccccHHHHHHH------HHHHhcCc---eEEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEEEe
Q 002750 253 MRIINSFNIDSPSNLEKMREEDLERC------LYQSLQGY---SYLVVIDDVWQK--ETWESLKRAFPDSKNGSRVILTT 321 (885)
Q Consensus 253 ~~il~~l~~~~~~~~~~~~~~~~~~~------l~~~l~~~---r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTt 321 (885)
.-+...+..-.. ....+.+... -..+++++ .-+||+|++.+. .++..+ +...+.|||||++-
T Consensus 81 ~p~~d~l~~~~~----~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~G 153 (205)
T PF02562_consen 81 RPIYDALEELFG----KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITG 153 (205)
T ss_dssp HHHHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE
T ss_pred HHHHHHHHHHhC----hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEec
Confidence 111111111000 0011111100 01123444 359999999764 455555 55567899999997
Q ss_pred cchH
Q 002750 322 RIRE 325 (885)
Q Consensus 322 R~~~ 325 (885)
-..+
T Consensus 154 D~~Q 157 (205)
T PF02562_consen 154 DPSQ 157 (205)
T ss_dssp ----
T ss_pred Ccee
Confidence 6443
No 214
>PRK06526 transposase; Provisional
Probab=96.95 E-value=0.0015 Score=66.69 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..-+.|+|++|+|||+||..+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 456899999999999999999765
No 215
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.94 E-value=0.0086 Score=71.81 Aligned_cols=175 Identities=13% Similarity=0.135 Sum_probs=94.3
Q ss_pred cccccccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE-----------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTE 249 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (885)
+++.|.+..++++.+.+... -...+-+.++|++|+|||++|+.+++. ....| +.++.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~~----- 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGPE----- 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecHH-----
Confidence 45789999999988876321 123467889999999999999999886 22222 2232211
Q ss_pred HHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH-------------HHHHHHHhhCCCC-CCCc
Q 002750 250 DLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK-------------ETWESLKRAFPDS-KNGS 315 (885)
Q Consensus 250 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-------------~~~~~l~~~l~~~-~~gs 315 (885)
+ ..... ......+...+.....+.+.+|++|+++.. .....+...+... ..+.
T Consensus 248 -i----~~~~~--------g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 248 -I----MSKYY--------GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred -H----hcccc--------cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 1 10000 011222333333344556679999998532 1223344444322 2233
Q ss_pred EEEE-EecchH-HhhccC--C-CCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchH
Q 002750 316 RVIL-TTRIRE-VAERSD--E-RTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPL 381 (885)
Q Consensus 316 ~iii-TtR~~~-v~~~~~--~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 381 (885)
.++| ||.... +..... + -...+.+...+.++-.+++........-.. .....++++.+.|.--
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCCH
Confidence 3444 444332 111110 1 134577888888888888886543221111 1225667778877653
No 216
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.93 E-value=0.0032 Score=63.71 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=38.8
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHH
Q 002750 193 LLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTED 250 (885)
Q Consensus 193 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 250 (885)
+-+.|..+=+...++.|+|++|+|||++|.+++.. ....-..++|++.. .++.+.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHH
Confidence 33444333345689999999999999999999875 32334568899887 555444
No 217
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.93 E-value=0.01 Score=55.43 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCceEEEEEecC----CCHHHHHHHHhhCCCCCCCcEEEEEecchHHhhccCCCCceeecCCCC
Q 002750 273 EDLERCLYQSLQGYSYLVVIDDV----WQKETWESLKRAFPDSKNGSRVILTTRIREVAERSDERTHAYELPFLR 343 (885)
Q Consensus 273 ~~~~~~l~~~l~~~r~LlVlDdv----~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~~~l~~L~ 343 (885)
++-.-.+.+.+-+++-+++-|+- +..-.|+-+.-.-.-+..|..|+++|.+.++...+....-.++-+.|.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~ 216 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEE
Confidence 34445567777788889999974 333455544332223567999999999999877664333333333333
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.019 Score=60.97 Aligned_cols=92 Identities=16% Similarity=0.290 Sum_probs=63.7
Q ss_pred CceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecc-hHHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCC
Q 002750 285 GYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRI-REVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNA 361 (885)
Q Consensus 285 ~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 361 (885)
+++=++|+|+++. ...+..+...+..-+.++.+|++|.+ ..+.....+....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 4455888999974 57888899888876777766665554 44443334556789999999999999887641 1
Q ss_pred ChhHHHHHHHHHHHcCCchHHHHHH
Q 002750 362 DEGLEKLGREMLEKCGGLPLAIVVL 386 (885)
Q Consensus 362 ~~~~~~~~~~i~~~~~g~Plai~~~ 386 (885)
.+ ...++..++|.|.....+
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999754433
No 219
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.015 Score=64.99 Aligned_cols=176 Identities=18% Similarity=0.071 Sum_probs=92.1
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc--HHHHHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR--TEDLLMRIINS 258 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~ 258 (885)
.+|+--....++..+.....--...-|.|.|+.|+|||+||+++++... +.+.-++.+|+++.-.. .+.++
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQ------ 480 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQ------ 480 (952)
T ss_pred CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHH------
Confidence 3344333333444433333333456789999999999999999998743 55555677777764311 11111
Q ss_pred hcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH--------HHH----HHHHhhC----C-CCCCCcE--EEE
Q 002750 259 FNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK--------ETW----ESLKRAF----P-DSKNGSR--VIL 319 (885)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--------~~~----~~l~~~l----~-~~~~gs~--iii 319 (885)
..+.....+.+...+-+|||||++-. ..| +.+..++ . -...+.+ +|-
T Consensus 481 --------------k~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Ia 546 (952)
T KOG0735|consen 481 --------------KFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIA 546 (952)
T ss_pred --------------HHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEE
Confidence 11222233445566779999998631 111 1111111 1 1223343 444
Q ss_pred EecchHHhh-cc---CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCc
Q 002750 320 TTRIREVAE-RS---DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGL 379 (885)
Q Consensus 320 TtR~~~v~~-~~---~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 379 (885)
|.....-.. .. .--..+..+..+...+-.++++........ ....+...-+..+|+|.
T Consensus 547 t~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~--~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 547 TGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLS--DITMDDLDFLSVKTEGY 608 (952)
T ss_pred echhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhh--hhhhHHHHHHHHhcCCc
Confidence 444322111 11 011345678888888888877766533332 12233334477788764
No 220
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.92 E-value=0.0034 Score=66.53 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=27.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecc
Q 002750 205 SVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVS 243 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 243 (885)
.-+.++|++|+|||+||..+++.. ...-..++++++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHH
Confidence 679999999999999999999863 2222356677643
No 221
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.92 E-value=2e-05 Score=81.68 Aligned_cols=262 Identities=18% Similarity=0.162 Sum_probs=141.9
Q ss_pred HhHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCC-CCCCC--CccccCCCCccEEecCC--Cccc
Q 002750 580 RWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNS-PIDNL--PPSIEKLQRLQTLDLSD--TLCG 654 (885)
Q Consensus 580 ~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~-~i~~l--p~~i~~L~~L~~L~Ls~--~~~~ 654 (885)
..+-..++++..|++.+|..+++. .+-+.-..++.|++|++..| .|+.. -.-...+++|.+|+++. .+.+
T Consensus 157 rt~~~~CpnIehL~l~gc~~iTd~-----s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 157 RTFASNCPNIEHLALYGCKKITDS-----SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hHHhhhCCchhhhhhhcceeccHH-----HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence 355677888888888888753221 22222346788888888884 35522 22235677888888876 2222
Q ss_pred --CChhhccccccccccccccccccccCccCCCccCccccccccccCCcccCCCCeeEeecccc-cchhhccchhhhhcc
Q 002750 655 --IPTEISKLTELRHLIGNFSGYLPIENLTNLRTLKYVSVESWNRLSPDKLINLRELHIEDKEW-TREKVLFTFNSIAKL 731 (885)
Q Consensus 655 --lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~l 731 (885)
+..-..++.+|+.+... +... ..++.|... -.....+.++++..+.. ++... . ..-...
T Consensus 232 ~gv~~~~rG~~~l~~~~~k--GC~e----~~le~l~~~---------~~~~~~i~~lnl~~c~~lTD~~~--~-~i~~~c 293 (483)
T KOG4341|consen 232 NGVQALQRGCKELEKLSLK--GCLE----LELEALLKA---------AAYCLEILKLNLQHCNQLTDEDL--W-LIACGC 293 (483)
T ss_pred CcchHHhccchhhhhhhhc--cccc----ccHHHHHHH---------hccChHhhccchhhhccccchHH--H-HHhhhh
Confidence 11111222222222000 0000 001111110 01233344455444422 22111 1 222345
Q ss_pred CCCceEEeeecCCccc-cccccCCCCCCcceEEEeee--cCC-CChhhhhcCCCccEEEEeccCCCCCC-hhH-HhcCcC
Q 002750 732 KSLQILSIKLSGERSF-DLLQPLCDCPCLSDLRLRGK--IEK-LPEDIHVILPNLECLSLEDSNLDDDP-MPE-LEKMSN 805 (885)
Q Consensus 732 ~~L~~l~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~--~~~-lp~~~~~~l~~L~~L~L~~~~l~~~~-~~~-l~~l~~ 805 (885)
..|+.+..+.+..... .+.......++|+.|-+.++ ++. --..++...+.|+.+++..|.+.-+. +.. -.++|.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 6677776654433221 22333466789999999987 321 11234444689999999999754322 222 256899
Q ss_pred CCceEeeccccC-CeEE---eecCCCCcccceeEee-cCCCcceEE-cCCccccccceeeccccc
Q 002750 806 LVILDLSYDSYS-GKKL---FCTAKGFPRLEILQLL-VDELEEWQV-EEGAMPRLRGLRIPEHLK 864 (885)
Q Consensus 806 L~~L~L~~n~~~-~~~~---~~~~~~~~~L~~L~l~-~~~l~~l~~-~~~~~~~L~~L~l~~c~~ 864 (885)
|+.|.|+++... +..+ .....++..|+.|.|+ ++.+++-.. ....+++|+.+++-+|..
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 999999987643 3211 1122467889999999 777664321 235678999999999987
No 222
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.91 E-value=0.024 Score=55.55 Aligned_cols=175 Identities=18% Similarity=0.191 Sum_probs=97.9
Q ss_pred cccccccccccHHH---HHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHH
Q 002750 179 VEENVVGFEDDANK---LLAHLLKE----DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDL 251 (885)
Q Consensus 179 ~~~~~vGr~~~~~~---l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 251 (885)
.-+++||.++.+.+ |++.|... +..++-|..+|++|.|||.+|+++.+.. +-.| +-|...
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~--kvp~---l~vkat-------- 185 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPL---LLVKAT-------- 185 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc--CCce---EEechH--------
Confidence 34568898877754 45555443 3467899999999999999999999973 3222 112111
Q ss_pred HHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH--------------HHHHHHHhhCCC--CCCCc
Q 002750 252 LMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK--------------ETWESLKRAFPD--SKNGS 315 (885)
Q Consensus 252 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--------------~~~~~l~~~l~~--~~~gs 315 (885)
+++...- + ....++.+...+.-+.-++++.+|.++.. +....+...+.. .+.|.
T Consensus 186 --~liGehV---G-----dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 186 --ELIGEHV---G-----DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred --HHHHHHh---h-----hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 1111110 0 01122222233333567899999988632 223334444442 34566
Q ss_pred EEEEEecchHHhhcc-CC-CCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCc
Q 002750 316 RVILTTRIREVAERS-DE-RTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGL 379 (885)
Q Consensus 316 ~iiiTtR~~~v~~~~-~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 379 (885)
..|-.|...++.... .. -.+.++...-+++|-.+++...+..-.-+. ..-.+.++++.+|+
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv---~~~~~~~~~~t~g~ 318 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV---DADLRYLAAKTKGM 318 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCC
Confidence 666666666554432 11 124566777788888888888774433221 11145556666554
No 223
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.91 E-value=0.0017 Score=63.40 Aligned_cols=57 Identities=25% Similarity=0.259 Sum_probs=37.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccc-cccHHHHHHHHHHHhcCC
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQ-EYRTEDLLMRIINSFNID 262 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~ 262 (885)
++|+.++|+.|+||||.+.+++.....+ -..+..++... .....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4799999999999999888887653222 33466666432 234456677777777754
No 224
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.91 E-value=0.034 Score=55.18 Aligned_cols=225 Identities=14% Similarity=0.157 Sum_probs=125.9
Q ss_pred ccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCc----ccccccceeEEEeccccc-----------
Q 002750 182 NVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHN----DVKHKFACCAWVSVSQEY----------- 246 (885)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~----~~~~~f~~~~wv~~~~~~----------- 246 (885)
.+.++++...++..... .+..+-..++|+.|.||-|.+..+.+.. ..+-.-+...|.+-+...
T Consensus 14 ~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 35666666666666554 3357888999999999999876665541 111122344555543320
Q ss_pred ----------cHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceE-EEEEecCCCH--HHHHHHHhhCCCCCC
Q 002750 247 ----------RTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSY-LVVIDDVWQK--ETWESLKRAFPDSKN 313 (885)
Q Consensus 247 ----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVlDdv~~~--~~~~~l~~~l~~~~~ 313 (885)
..+-+.++++.+.....+- +....+.| ++|+-.++.. ++-..++.....-..
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qi---------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQI---------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcch---------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 0112333333333221110 00012334 6667666643 444555555544455
Q ss_pred CcEEEEEecch-HHhhccCCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhc-
Q 002750 314 GSRVILTTRIR-EVAERSDERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLS- 391 (885)
Q Consensus 314 gs~iiiTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~- 391 (885)
.+|+|+...+. .+-.......-.+++...+++|....+...+-...-.-| .+++.+|+++++|+-.-.-.+...++
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 67777644322 122222244567899999999999999887755544333 78899999999987654333333333
Q ss_pred -CC---------ChHHHHHHHHHHHHhhhcC--chhhhhhhhcccc
Q 002750 392 -KK---------KPQEWRIVRDHIWRHLRAD--SIQISHLLDLSFN 425 (885)
Q Consensus 392 -~~---------~~~~w~~~~~~l~~~~~~~--~~~~~~~l~~sy~ 425 (885)
+. +..+|+.+..+.....-.. +..+.++-..-|+
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYe 280 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYE 280 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 11 2348999998887765433 3344443333343
No 225
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.91 E-value=0.0043 Score=62.64 Aligned_cols=100 Identities=20% Similarity=0.276 Sum_probs=53.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
...+.++|.+|+|||+||..+++.. ...-..++++++ .+++..+-...... ......+ .+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it~------~~l~~~l~~~~~~~------~~~~~~~----l~~l 160 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIITV------ADIMSAMKDTFSNS------ETSEEQL----LNDL 160 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEH------HHHHHHHHHHHhhc------cccHHHH----HHHh
Confidence 4578899999999999999999873 222234566643 34444443333210 1112222 2234
Q ss_pred cCceEEEEEecCCC--HHHHHH--HHhhCCC-CCCCcEEEEEec
Q 002750 284 QGYSYLVVIDDVWQ--KETWES--LKRAFPD-SKNGSRVILTTR 322 (885)
Q Consensus 284 ~~~r~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~iiiTtR 322 (885)
.. .=+||+||+.. ...|+. +...+.. ....-.+||||.
T Consensus 161 ~~-~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 161 SN-VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred cc-CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 32 23888899953 244543 2222221 112334777776
No 226
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.90 E-value=0.0048 Score=63.00 Aligned_cols=59 Identities=25% Similarity=0.340 Sum_probs=40.2
Q ss_pred CCCCcEEEEEEecCCchHHHHHHHHhcCccccc----ccceeEEEeccccccHHHHHHHHHHHh
Q 002750 200 EDPRRSVISIFGMGGLGKTTLARKLYHHNDVKH----KFACCAWVSVSQEYRTEDLLMRIINSF 259 (885)
Q Consensus 200 ~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l 259 (885)
+=+...++.|+|++|+|||++|..++....... ....++|++....++.+++ .++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~ 77 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERF 77 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHh
Confidence 334568999999999999999999874421222 1357899998877665443 3344443
No 227
>PRK06921 hypothetical protein; Provisional
Probab=96.86 E-value=0.0045 Score=63.80 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=28.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccc-cceeEEEec
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHK-FACCAWVSV 242 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~ 242 (885)
....+.++|.+|+|||+||..+++. .... -..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 3567899999999999999999987 3322 334667764
No 228
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.86 E-value=0.0012 Score=62.19 Aligned_cols=102 Identities=24% Similarity=0.362 Sum_probs=70.4
Q ss_pred CCceEEeeecCCccccccccCCCCCCcceEEEeee-cCCCChhhhhcCCCccEEEEeccCCCC-CChhHHhcCcCCCceE
Q 002750 733 SLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGK-IEKLPEDIHVILPNLECLSLEDSNLDD-DPMPELEKMSNLVILD 810 (885)
Q Consensus 733 ~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~lp~~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~ 810 (885)
..+.++++.++.. -...+..++.|..|.++.| +..+.+.+..++++|..|.|.+|++.. ..+..+..+|+|++|.
T Consensus 43 ~~d~iDLtdNdl~---~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR---KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh---hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4455555433221 2345677888899999887 777777888878899999999988753 2345678889999999
Q ss_pred eeccccCCeE-E-eecCCCCcccceeEee
Q 002750 811 LSYDSYSGKK-L-FCTAKGFPRLEILQLL 837 (885)
Q Consensus 811 L~~n~~~~~~-~-~~~~~~~~~L~~L~l~ 837 (885)
+-+|...... . ......+|+|+.|+++
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehh
Confidence 9888765432 1 1122357888888887
No 229
>PHA00729 NTP-binding motif containing protein
Probab=96.86 E-value=0.0063 Score=59.94 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=25.2
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 193 LLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 193 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+++.+... ....|.|+|.+|+||||||..+.+.
T Consensus 8 ~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 8 IVSAYNNN--GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 44444333 3457889999999999999999875
No 230
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.84 E-value=0.0033 Score=62.78 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=38.0
Q ss_pred cCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHH
Q 002750 199 KEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLL 252 (885)
Q Consensus 199 ~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 252 (885)
.+=+...++.|+|++|+|||+++.++... .......++|++... ++...+.
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHH
Confidence 33345789999999999999999998865 333346789999875 5555444
No 231
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.84 E-value=0.0011 Score=69.92 Aligned_cols=49 Identities=18% Similarity=0.417 Sum_probs=41.6
Q ss_pred cccccccccccHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 179 VEENVVGFEDDANKLLAHLLKE----DPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
-..+++|.++.++++++++... +.+.+++.++|++|+||||||+.+.+.
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3447999999999999999653 335689999999999999999999876
No 232
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.84 E-value=0.007 Score=57.62 Aligned_cols=40 Identities=35% Similarity=0.480 Sum_probs=29.9
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc
Q 002750 206 VISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR 247 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (885)
++.|+|++|+||||++..+... ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999876 222335678888765543
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.0037 Score=63.89 Aligned_cols=75 Identities=27% Similarity=0.377 Sum_probs=45.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQS 282 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~ 282 (885)
+..-+.++|++|+|||.||.++.+.. ...--.+.+++ ..+++.++....... .....+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l--~~~g~sv~f~~------~~el~~~Lk~~~~~~-----------~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL--LKAGISVLFIT------APDLLSKLKAAFDEG-----------RLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhcC-----------chHHHHHHH
Confidence 45678899999999999999999984 33223456665 344555555544331 111223332
Q ss_pred hcCceEEEEEecCCC
Q 002750 283 LQGYSYLVVIDDVWQ 297 (885)
Q Consensus 283 l~~~r~LlVlDdv~~ 297 (885)
+..- =||||||+..
T Consensus 165 l~~~-dlLIiDDlG~ 178 (254)
T COG1484 165 LKKV-DLLIIDDIGY 178 (254)
T ss_pred hhcC-CEEEEecccC
Confidence 3221 2899999864
No 234
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.78 E-value=0.0081 Score=68.61 Aligned_cols=45 Identities=29% Similarity=0.464 Sum_probs=36.1
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
++++|.+..++.+...+... ...-|.|+|++|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999988876543 2345679999999999999999753
No 235
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.042 Score=59.43 Aligned_cols=145 Identities=19% Similarity=0.263 Sum_probs=83.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHH-
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLY- 280 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~- 280 (885)
.....+.+.|++|+|||+||..++.. ..|..+--++..+ ....++..-...+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~----------------------miG~sEsaKc~~i~k 589 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPED----------------------MIGLSESAKCAHIKK 589 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHH----------------------ccCccHHHHHHHHHH
Confidence 35667889999999999999999965 4565544333111 11122222222233
Q ss_pred ---HHhcCceEEEEEecCCCHHHH------------HHHHhhCCCCC-CCcE--EEEEecchHHhhccC---CCCceeec
Q 002750 281 ---QSLQGYSYLVVIDDVWQKETW------------ESLKRAFPDSK-NGSR--VILTTRIREVAERSD---ERTHAYEL 339 (885)
Q Consensus 281 ---~~l~~~r~LlVlDdv~~~~~~------------~~l~~~l~~~~-~gs~--iiiTtR~~~v~~~~~---~~~~~~~l 339 (885)
..-+..--.||+||+...-+| ..+.-.+...+ .|-| |+-||....+.+.++ .-...|.+
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 333445568999998754333 33333333322 3333 445676777777662 22457888
Q ss_pred CCCCh-hhHHHHHHHHH-hcCCCCChhHHHHHHHHHHHc
Q 002750 340 PFLRP-DESWKLFCEKA-FQSFNADEGLEKLGREMLEKC 376 (885)
Q Consensus 340 ~~L~~-~e~~~lf~~~~-~~~~~~~~~~~~~~~~i~~~~ 376 (885)
+.++. ++..+.+...- |. +...+.++++...+|
T Consensus 670 pnl~~~~~~~~vl~~~n~fs----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEELNIFS----DDEVRAIAEQLLSKK 704 (744)
T ss_pred CccCchHHHHHHHHHccCCC----cchhHHHHHHHhccc
Confidence 88887 66777666543 21 234455566666666
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=96.77 E-value=0.0035 Score=64.45 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
...+.|+|++|+|||+||..+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 356889999999999999999765
No 237
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.76 E-value=0.047 Score=58.85 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=32.8
Q ss_pred cccHHHHHHHHhcCC-CCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 187 EDDANKLLAHLLKED-PRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 187 ~~~~~~l~~~L~~~~-~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+.-.+.+.+.+...+ ....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344566777776553 57899999999999999999999876
No 238
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.74 E-value=0.0058 Score=64.23 Aligned_cols=117 Identities=13% Similarity=0.180 Sum_probs=63.5
Q ss_pred cccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCC
Q 002750 185 GFEDDANKLLAHLLKE--DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNID 262 (885)
Q Consensus 185 Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 262 (885)
++....+...+++..- ....+-+.|+|+.|+|||.||..+++... ..-..+.+++++ .++..+-......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEHH------HHHHHHHHHHhcC
Confidence 3434444444554321 12346788999999999999999998732 222335566643 3444444443211
Q ss_pred CCCccccccHHHHHHHHHHHhcCceEEEEEecCCC--HHHHHH--HHhhC-CCC-CCCcEEEEEec
Q 002750 263 SPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQ--KETWES--LKRAF-PDS-KNGSRVILTTR 322 (885)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~--~~~~~~--l~~~l-~~~-~~gs~iiiTtR 322 (885)
+..+. +. .++. -=||||||+.. ...|.. +...+ ... ..+-.+|+||.
T Consensus 207 --------~~~~~---l~-~l~~-~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 --------SVKEK---ID-AVKE-APVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred --------cHHHH---HH-HhcC-CCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 11111 22 2222 23899999963 345643 44433 221 23455888886
No 239
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.72 E-value=0.0047 Score=63.33 Aligned_cols=68 Identities=24% Similarity=0.261 Sum_probs=44.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccc----ccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 192 KLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDV----KHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 192 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
.|-+.|..+=....+.=|+|++|+|||.|+..++-.... .+.-..++|++....++.+++. +|++...
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 344444333234579999999999999999877643212 1223469999999889887765 4666543
No 240
>PRK07261 topology modulation protein; Provisional
Probab=96.72 E-value=0.0039 Score=59.74 Aligned_cols=22 Identities=59% Similarity=0.865 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999765
No 241
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.71 E-value=0.0025 Score=58.70 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=59.7
Q ss_pred ccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccc-ccccceeEEEeccccccHHHHHHHHHHHhcCC
Q 002750 184 VGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDV-KHKFACCAWVSVSQEYRTEDLLMRIINSFNID 262 (885)
Q Consensus 184 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 262 (885)
||....++++.+.+..-.....-|.|+|..|+||+++|+.++..... ...|.. +.+... . .++++
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~-~-----~~~l~----- 66 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASL-P-----AELLE----- 66 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCT-C-----HHHHH-----
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhC-c-----HHHHH-----
Confidence 56667777777776543333456789999999999999988876221 112211 111110 0 11111
Q ss_pred CCCccccccHHHHHHHHHHHhcCceEEEEEecCCC--HHHHHHHHhhCCC-CCCCcEEEEEecc
Q 002750 263 SPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQ--KETWESLKRAFPD-SKNGSRVILTTRI 323 (885)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~--~~~~~~l~~~l~~-~~~gs~iiiTtR~ 323 (885)
+ . +.--++|+|++. .+....+...+.. .....|+|.||+.
T Consensus 67 ------------------~-a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 67 ------------------Q-A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ------------------H-C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ------------------H-c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1 1 223678999975 3455556655543 2567899999884
No 242
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.70 E-value=0.00034 Score=61.22 Aligned_cols=72 Identities=22% Similarity=0.332 Sum_probs=48.9
Q ss_pred HHhHhccCceeEEEeccccccccccccccCCCchhhcccccccEEEecCCCCCCCCccccCCCCccEEecCCC-cccCCh
Q 002750 579 LRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPIDNLPPSIEKLQRLQTLDLSDT-LCGIPT 657 (885)
Q Consensus 579 ~~~~~~~~~~Lr~L~L~~~~~~~~~~l~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~Ls~~-~~~lp~ 657 (885)
++.+..+++.+..|+|++|. +. .+|..+..++.||.|++++|.+...|.-|..|.+|-.||..+| ...+|.
T Consensus 69 p~kft~kf~t~t~lNl~~ne------is--dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 69 PKKFTIKFPTATTLNLANNE------IS--DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred CHHHhhccchhhhhhcchhh------hh--hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 33455666677777777777 76 6777777777777777777777777777766777777777664 444554
Q ss_pred h
Q 002750 658 E 658 (885)
Q Consensus 658 ~ 658 (885)
+
T Consensus 141 d 141 (177)
T KOG4579|consen 141 D 141 (177)
T ss_pred H
Confidence 4
No 243
>PRK04296 thymidine kinase; Provisional
Probab=96.65 E-value=0.0043 Score=60.62 Aligned_cols=113 Identities=13% Similarity=0.048 Sum_probs=62.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhc
Q 002750 205 SVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQ 284 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 284 (885)
.++.|+|+.|.||||+|..++.+ ...+-..++.+. ..++.......++.+++..... .......++...+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~-~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREA-IPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccc-eEeCChHHHHHHHHh-hC
Confidence 57889999999999999988876 322333333342 1112222233445555432221 111233444444444 23
Q ss_pred CceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecchH
Q 002750 285 GYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIRE 325 (885)
Q Consensus 285 ~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~~ 325 (885)
++.-+||+|.+.- .++...+...+ ...|..||+|.+..+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 3445899999853 23233343332 245788999998654
No 244
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.63 E-value=0.0055 Score=64.24 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=55.4
Q ss_pred CCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCC--CccccccHHHHHH
Q 002750 200 EDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSP--SNLEKMREEDLER 277 (885)
Q Consensus 200 ~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~ 277 (885)
+=+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++.+.. --....+.++...
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALE 123 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHH
Confidence 3346789999999999999999998765 33334568899987776653 2333433211 0001113445555
Q ss_pred HHHHHhc-CceEEEEEecCC
Q 002750 278 CLYQSLQ-GYSYLVVIDDVW 296 (885)
Q Consensus 278 ~l~~~l~-~~r~LlVlDdv~ 296 (885)
.+...++ +.--++|+|.+-
T Consensus 124 i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 124 IADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHhccCCCEEEEcchH
Confidence 5555443 344589999864
No 245
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.63 E-value=0.013 Score=71.00 Aligned_cols=132 Identities=14% Similarity=0.231 Sum_probs=73.3
Q ss_pred cccccccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE-------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLM 253 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (885)
..++|-+..++.+...+... +....++.++|+.|+|||+||+.+.+. .-+.-...+-++.+.-.+...+ .
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-S 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH-H
Confidence 56889999999998887532 122356778999999999999999864 2111122333444332111111 1
Q ss_pred HHHHHhcCCCCCccccccHHHHHHHHHHHhcCce-EEEEEecCC--CHHHHHHHHhhCCCC-----------CCCcEEEE
Q 002750 254 RIINSFNIDSPSNLEKMREEDLERCLYQSLQGYS-YLVVIDDVW--QKETWESLKRAFPDS-----------KNGSRVIL 319 (885)
Q Consensus 254 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r-~LlVlDdv~--~~~~~~~l~~~l~~~-----------~~gs~iii 319 (885)
.+ ++.+ + .....+. ...+.+.++.++ -+++||+++ +.+.+..+...+..+ -..+-||+
T Consensus 586 ~l---~g~~-~-gyvg~~~---~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 586 KL---IGSP-P-GYVGYNE---GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred Hh---cCCC-C-cccCcCc---cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 11 1111 1 1111111 112334444444 589999997 456777777776543 13455677
Q ss_pred Eecc
Q 002750 320 TTRI 323 (885)
Q Consensus 320 TtR~ 323 (885)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 7764
No 246
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.62 E-value=0.0068 Score=61.68 Aligned_cols=101 Identities=19% Similarity=0.332 Sum_probs=59.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccccc-ceeEEEecccccc-HHHHHHHHHHHhcCCCC----Ccccc-----cc
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKF-ACCAWVSVSQEYR-TEDLLMRIINSFNIDSP----SNLEK-----MR 271 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~----~~~~~-----~~ 271 (885)
+-+-++|.|.+|+|||||++.+++. ++.+| +.++++-+++... ..++...+...-..... ...+. ..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4467899999999999999999987 44455 4566677776544 34555555443211111 00011 11
Q ss_pred HHHHHHHHHHHh--c-CceEEEEEecCCCH-HHHHHHH
Q 002750 272 EEDLERCLYQSL--Q-GYSYLVVIDDVWQK-ETWESLK 305 (885)
Q Consensus 272 ~~~~~~~l~~~l--~-~~r~LlVlDdv~~~-~~~~~l~ 305 (885)
.....-.+.+++ + ++.+|+++||+... ..+.++.
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis 183 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVS 183 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHH
Confidence 112233345555 3 89999999998543 3444443
No 247
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.019 Score=61.00 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=44.5
Q ss_pred ceEEEEEecCC--CHHHHHHHHhhCCCCCCCcEEEEEecchH-HhhccCCCCceeecCCCChhhHHHHHHHH
Q 002750 286 YSYLVVIDDVW--QKETWESLKRAFPDSKNGSRVILTTRIRE-VAERSDERTHAYELPFLRPDESWKLFCEK 354 (885)
Q Consensus 286 ~r~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~iiiTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~ 354 (885)
++-++|+|+++ +...-..+...+.....+..+|++|.+.. +...+......+.+.+++.++..+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 33455668876 34555556665554444566777777544 44333455678999999999999888654
No 248
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.57 E-value=0.0099 Score=62.65 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=46.5
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc----cccceeEEEeccccccHHHHHHHHHHHhcC
Q 002750 192 KLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVK----HKFACCAWVSVSQEYRTEDLLMRIINSFNI 261 (885)
Q Consensus 192 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 261 (885)
.+-+.|..+=+..+++-|+|++|+|||+++..++-..... +.-..++|++....++++++.. +++.++.
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 3444454443456899999999999999998876321111 1124689999998888887653 5566554
No 249
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.56 E-value=0.0016 Score=58.44 Aligned_cols=22 Identities=50% Similarity=0.619 Sum_probs=20.6
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
||.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 250
>PRK09354 recA recombinase A; Provisional
Probab=96.55 E-value=0.0078 Score=63.60 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=59.4
Q ss_pred HHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCC--cccc
Q 002750 193 LLAHLL-KEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPS--NLEK 269 (885)
Q Consensus 193 l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~ 269 (885)
+-..|. .+=+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .+++++..... ....
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp 120 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQP 120 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecC
Confidence 334443 33346789999999999999999998765 33334568899988877753 34444432110 0011
Q ss_pred ccHHHHHHHHHHHhc-CceEEEEEecCC
Q 002750 270 MREEDLERCLYQSLQ-GYSYLVVIDDVW 296 (885)
Q Consensus 270 ~~~~~~~~~l~~~l~-~~r~LlVlDdv~ 296 (885)
...++....+...++ +.--+||+|.+-
T Consensus 121 ~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 121 DTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 134445555555553 344589999874
No 251
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.016 Score=62.49 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=35.4
Q ss_pred cccccc---ccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcCc
Q 002750 182 NVVGFE---DDANKLLAHLLKE-------DPRRSVISIFGMGGLGKTTLARKLYHHN 228 (885)
Q Consensus 182 ~~vGr~---~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 228 (885)
++-|-| .|+++|+++|..+ ..-++=|.++|++|.|||-||++++...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 345655 5667888888654 1234678899999999999999999873
No 252
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.53 E-value=0.044 Score=57.58 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=23.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..++.+.|+|++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999987
No 253
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.52 E-value=0.01 Score=59.65 Aligned_cols=53 Identities=23% Similarity=0.189 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc
Q 002750 193 LLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR 247 (885)
Q Consensus 193 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (885)
+-+.|..+=+...++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 33444333345789999999999999999999865 222334578887655543
No 254
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.028 Score=56.96 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccc
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDV 230 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~ 230 (885)
-|+|.++||+|.|||+|.+..++...+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 389999999999999999999987443
No 255
>PTZ00494 tuzin-like protein; Provisional
Probab=96.51 E-value=0.81 Score=49.14 Aligned_cols=168 Identities=14% Similarity=0.173 Sum_probs=101.2
Q ss_pred ccccccccccccHHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHH
Q 002750 178 AVEENVVGFEDDANKLLAHLLKE-DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRII 256 (885)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 256 (885)
..+..+|.|+.+-..+...|.+. ..+++++.+.|.-|.||++|.+.....+.. ..++|++.. .++-++.++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg---~EDtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGG---TEDTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecC---CcchHHHHH
Confidence 55677899999988888888665 357899999999999999999988876433 356777765 355688889
Q ss_pred HHhcCCCCCccccccHHHHHHHHHH---HhcCceEEEEE--ecCCCHH-HHHHHHhhCCCCCCCcEEEEEecchHHhhc-
Q 002750 257 NSFNIDSPSNLEKMREEDLERCLYQ---SLQGYSYLVVI--DDVWQKE-TWESLKRAFPDSKNGSRVILTTRIREVAER- 329 (885)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~l~~---~l~~~r~LlVl--Ddv~~~~-~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~- 329 (885)
+.++.+..+.-. .-.+-+.+.... ...++.=+||+ -+-.+.. .+.+. -.|.....-++|++----+.+.-.
T Consensus 440 KALgV~nve~CG-DlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 440 RALGVSNVEVCG-DLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHhCCCChhhhc-cHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhh
Confidence 998875431100 011222222222 23344444554 2333322 22221 122233345667665443332211
Q ss_pred -cCCCCceeecCCCChhhHHHHHHHHH
Q 002750 330 -SDERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 330 -~~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
.-..-..|.+++++.++|.++..+..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 11345678899999999999887754
No 256
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.51 E-value=0.012 Score=62.56 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=46.0
Q ss_pred HHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccc----ccccceeEEEeccccccHHHHHHHHHHHhcC
Q 002750 194 LAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDV----KHKFACCAWVSVSQEYRTEDLLMRIINSFNI 261 (885)
Q Consensus 194 ~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 261 (885)
-+.|..+=+...++-|+|++|+|||+|+..++-.... .+.-..++|++....|+++++.. +++.++.
T Consensus 116 D~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 116 DELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred HhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 3344333345688999999999999999988633111 12224689999999888887654 5566554
No 257
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.50 E-value=0.01 Score=59.36 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCHHHHHHHHHHHHHhhhhhhHHHHHH
Q 002750 4 AIVSFVVQKLGDYLIQEAIFLKEVRNEVESLKNTLGWMQCFVKDA-EEKQDDNPLIRKWVSEIREIAYDAEDVLDKFL 80 (885)
Q Consensus 4 ~~v~~~~~kl~~~l~~e~~~~~~v~~~i~~L~~~l~~i~~~l~~a-e~~~~~~~~~~~wl~~lr~~ayd~eD~iD~~~ 80 (885)
+-|.+++++|-++.......+.-++.+++-++.|++.+|.||+.. +.....-+.....+.++-+.||++|.++|-+.
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 457788888888888777778889999999999999999999987 55555445589999999999999999999764
No 258
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.48 E-value=0.017 Score=57.80 Aligned_cols=128 Identities=12% Similarity=0.158 Sum_probs=74.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccc-----cccHHHHHHHHHHHhcCCCC---CccccccHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQ-----EYRTEDLLMRIINSFNIDSP---SNLEKMREED 274 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~~---~~~~~~~~~~ 274 (885)
+..+++|+|.+|.||||+++.+..- .... .+.++..-.+ .....+-..++++..+.... .-....+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L--~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL--EEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC--cCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 4579999999999999999999875 2222 2333333211 12233445666776664321 0011112222
Q ss_pred H-HHHHHHHhcCceEEEEEecCCCH---HHHHHHHhhCCC--CCCCcEEEEEecchHHhhccCCC
Q 002750 275 L-ERCLYQSLQGYSYLVVIDDVWQK---ETWESLKRAFPD--SKNGSRVILTTRIREVAERSDER 333 (885)
Q Consensus 275 ~-~~~l~~~l~~~r~LlVlDdv~~~---~~~~~l~~~l~~--~~~gs~iiiTtR~~~v~~~~~~~ 333 (885)
. .-.+.+.+.-++=++|.|+.-.. ..-.++...+.+ ...|...++.|.+-.++..+...
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhccc
Confidence 2 22356667778889999997532 222333333332 23466788888988888877443
No 259
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.00019 Score=70.45 Aligned_cols=80 Identities=28% Similarity=0.262 Sum_probs=49.2
Q ss_pred CCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeecCCCcceEE--cCCccccccce
Q 002750 780 PNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVDELEEWQV--EEGAMPRLRGL 857 (885)
Q Consensus 780 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L 857 (885)
.+.++|+.++|.++ +.....+||.|++|.|+-|+++... .+..+.+|+.|.|..|.|.++.. -...+|+|+.|
T Consensus 19 ~~vkKLNcwg~~L~--DIsic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD--DISICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCcc--HHHHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 55666777777664 2445666777777777777665422 12345667777777666665532 12456777777
Q ss_pred eeccccc
Q 002750 858 RIPEHLK 864 (885)
Q Consensus 858 ~l~~c~~ 864 (885)
+|..||-
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 7777666
No 260
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.46 E-value=0.016 Score=56.05 Aligned_cols=37 Identities=38% Similarity=0.623 Sum_probs=28.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEe
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVS 241 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 241 (885)
+..+|.++|++|+||||+|+.+++. ....+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 4579999999999999999999976 444455555553
No 261
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.46 E-value=0.026 Score=54.09 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=61.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC---cccccc---cc--eeEEEeccccccHHHHHHHHHHHhcCCC---CCcccccc
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH---NDVKHK---FA--CCAWVSVSQEYRTEDLLMRIINSFNIDS---PSNLEKMR 271 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~---~~~~~~---f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~---~~~~~~~~ 271 (885)
.-.+++|+|+.|+|||||.+.+..+ ..+.+. |. .+.|+. + .+.+..++... .......+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCC
Confidence 3468999999999999999988632 111111 10 123321 1 34556555432 11111222
Q ss_pred HH-HHHHHHHHHhcCc--eEEEEEecCC---CHHHHHHHHhhCCC-CCCCcEEEEEecchHHhh
Q 002750 272 EE-DLERCLYQSLQGY--SYLVVIDDVW---QKETWESLKRAFPD-SKNGSRVILTTRIREVAE 328 (885)
Q Consensus 272 ~~-~~~~~l~~~l~~~--r~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~iiiTtR~~~v~~ 328 (885)
.. ...-.+.+.+-.+ +=++++|+.- +....+.+...+.. ...|..||++|.+.....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22 2222344444444 5688889874 33444444443332 124667888888877654
No 262
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.46 E-value=0.0093 Score=62.50 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=55.4
Q ss_pred CCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCC--CccccccHHHHHH
Q 002750 200 EDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSP--SNLEKMREEDLER 277 (885)
Q Consensus 200 ~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~~ 277 (885)
+=+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++.... -.......++...
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALE 123 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 3356789999999999999999988765 23333457899887766553 2444443211 0001113444555
Q ss_pred HHHHHhc-CceEEEEEecCC
Q 002750 278 CLYQSLQ-GYSYLVVIDDVW 296 (885)
Q Consensus 278 ~l~~~l~-~~r~LlVlDdv~ 296 (885)
.+...++ +.--+||+|.+.
T Consensus 124 ~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 124 IAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHHhhccCCcEEEEcchh
Confidence 5555443 345589999874
No 263
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.44 E-value=0.028 Score=57.42 Aligned_cols=173 Identities=17% Similarity=0.136 Sum_probs=90.6
Q ss_pred ccccccccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccH-HHHHHHHH
Q 002750 180 EENVVGFEDDANKLLAHLLKE--DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRT-EDLLMRII 256 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~il 256 (885)
...++|-.++..++-.++.+. .+...-|.|+||.|.|||+|...+..+ .+..-....-|......-. +-.++.|.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 345788888888888888543 233456779999999999999888776 2221122333444333222 22345555
Q ss_pred HHhcCCCCC-ccccccHHHHHHHHHHHhc------CceEEEEEecCCCH------HHHHHHHhhCC-CCCCCcEEEEEec
Q 002750 257 NSFNIDSPS-NLEKMREEDLERCLYQSLQ------GYSYLVVIDDVWQK------ETWESLKRAFP-DSKNGSRVILTTR 322 (885)
Q Consensus 257 ~~l~~~~~~-~~~~~~~~~~~~~l~~~l~------~~r~LlVlDdv~~~------~~~~~l~~~l~-~~~~gs~iiiTtR 322 (885)
.++...... .....+..+....+...|+ +.++++|+|+++-- .-...+...-. ...+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 555432110 0011122233333444442 34588999988632 11122222111 2345566678888
Q ss_pred chH-------HhhccCCCCceeecCCCChhhHHHHHHHHH
Q 002750 323 IRE-------VAERSDERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 323 ~~~-------v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
-.- |-... ....++-++.++-++...+++...
T Consensus 181 ld~lE~LEKRVKSRF-shr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRF-SHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhc-ccceeeccCCCChHHHHHHHHHHh
Confidence 432 11111 112344556666677777776654
No 264
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.44 E-value=0.014 Score=54.15 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999865
No 265
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.44 E-value=0.006 Score=71.96 Aligned_cols=115 Identities=12% Similarity=0.124 Sum_probs=65.1
Q ss_pred cccccccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE-------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLM 253 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (885)
..++|-++.++.+...+... ......+.++|++|+|||++|+.+.... .. ..+.+++++..... .
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~-~-- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERH-T-- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhcccc-c--
Confidence 35789999999888887632 2234578999999999999999998762 22 23344444322111 1
Q ss_pred HHHHHhcCCCCCccccccHHHHHHHHHHHhc-CceEEEEEecCCC--HHHHHHHHhhCC
Q 002750 254 RIINSFNIDSPSNLEKMREEDLERCLYQSLQ-GYSYLVVIDDVWQ--KETWESLKRAFP 309 (885)
Q Consensus 254 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~--~~~~~~l~~~l~ 309 (885)
...+-...+ .....+.. ..+.+.++ ...-+|+||+++. .+.+..+...+.
T Consensus 530 --~~~LiG~~~-gyvg~~~~---g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 --VSRLIGAPP-GYVGFDQG---GLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred --HHHHcCCCC-Cccccccc---chHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 122211111 00111111 11223332 3345999999985 456777776664
No 266
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.42 E-value=0.013 Score=62.05 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=45.3
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc---c-ccceeEEEeccccccHHHHHHHHHHHhcC
Q 002750 192 KLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVK---H-KFACCAWVSVSQEYRTEDLLMRIINSFNI 261 (885)
Q Consensus 192 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 261 (885)
.+-+.|..+=+...++.|+|++|+||||++..++...... + .-..++|++....++.++ +..+++.++.
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 3444454443467899999999999999999887431111 1 123579999888777775 3445555443
No 267
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.42 E-value=0.033 Score=57.23 Aligned_cols=130 Identities=23% Similarity=0.169 Sum_probs=69.5
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcC-CCC---
Q 002750 189 DANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNI-DSP--- 264 (885)
Q Consensus 189 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-~~~--- 264 (885)
..+.++..+... ....-++|+|+.|.||||+.+.+.... . .....+++.-.+-...+ ....+...... +..
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~~--~-~~~G~i~~~g~~v~~~d-~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARIL--S-TGISQLGLRGKKVGIVD-ERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCcc--C-CCCceEEECCEEeecch-hHHHHHHHhccccccccc
Confidence 344555555433 345789999999999999999999762 2 22333443211111010 01122222211 110
Q ss_pred ---CccccccHHHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHhhCCCCCCCcEEEEEecchHHhh
Q 002750 265 ---SNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTTRIREVAE 328 (885)
Q Consensus 265 ---~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~ 328 (885)
...+..........+... ..+=++++|++...+.+..+...+. .|..||+||....+..
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~--~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRS--MSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccchHHHHHHHHHHh--CCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 011111111112222222 3556999999988777777766653 4778999999766643
No 268
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.00026 Score=70.16 Aligned_cols=154 Identities=19% Similarity=0.196 Sum_probs=91.9
Q ss_pred CCeeEeecccccchhhccchhhhh-ccCCCceEEeeecCCcc-ccccccCCCCCCcceEEEeee-----cCCCChhhhhc
Q 002750 706 LRELHIEDKEWTREKVLFTFNSIA-KLKSLQILSIKLSGERS-FDLLQPLCDCPCLSDLRLRGK-----IEKLPEDIHVI 778 (885)
Q Consensus 706 L~~L~l~~~~~~~~~~~~~~~~l~-~l~~L~~l~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~-----~~~lp~~~~~~ 778 (885)
+.-|.+.++.+...... ..+. ..+.++.+++.++.... .++...+..+|.|+.|+|+.| ++.+| + .
T Consensus 47 ~ellvln~~~id~~gd~---~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~-p- 119 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDV---MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--L-P- 119 (418)
T ss_pred hhhheecCCCCCcchhH---HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--c-c-
Confidence 33455555544333222 2222 34678888887665432 234555678899999999887 23444 1 1
Q ss_pred CCCccEEEEeccCCCCCChh-HHhcCcCCCceEeeccccCCeEE--eecCCCCcccceeEeecCCCcceE---EcCCccc
Q 002750 779 LPNLECLSLEDSNLDDDPMP-ELEKMSNLVILDLSYDSYSGKKL--FCTAKGFPRLEILQLLVDELEEWQ---VEEGAMP 852 (885)
Q Consensus 779 l~~L~~L~L~~~~l~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~l~---~~~~~~~ 852 (885)
..+|+.|.|.+..+.+.-.. .+..+|.++.|.++.|++..... .+....-+.++.|++..|....|. .-..-||
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 47899999999887764443 45778888888888885432111 111122345566665533333221 1123589
Q ss_pred cccceeecccccCC
Q 002750 853 RLRGLRIPEHLKSR 866 (885)
Q Consensus 853 ~L~~L~l~~c~~~~ 866 (885)
++..+.+..||+++
T Consensus 200 nv~sv~v~e~PlK~ 213 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKT 213 (418)
T ss_pred cchheeeecCcccc
Confidence 99999999999843
No 269
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.40 E-value=0.071 Score=61.59 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=39.8
Q ss_pred cccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 179 VEENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..+.++|....++++.+.+..-.....-|.|+|..|+|||++|+.+.+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 3467899999999999887654333456779999999999999999875
No 270
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.041 Score=61.38 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=82.6
Q ss_pred cccccccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE-----------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTE 249 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (885)
+++-|.|+.+.++.+...-. -...+-|..+||||.|||++|+.+.+. .+-.| +.+...
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH----
Confidence 34556776666666544321 135678889999999999999999987 34444 333211
Q ss_pred HHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH-------------HHHHHHHhhCCCCCC--C
Q 002750 250 DLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK-------------ETWESLKRAFPDSKN--G 314 (885)
Q Consensus 250 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-------------~~~~~l~~~l~~~~~--g 314 (885)
.++.... +.++..+.+...+.-+..+.++.||.++.. ....++...+..... +
T Consensus 503 ----EL~sk~v--------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 ----ELFSKYV--------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred ----HHHHHhc--------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 0111111 111222223333333344578888887642 123334444443222 2
Q ss_pred cEEEE-EecchHHhhcc--CC-CCceeecCCCChhhHHHHHHHHHhcCCC
Q 002750 315 SRVIL-TTRIREVAERS--DE-RTHAYELPFLRPDESWKLFCEKAFQSFN 360 (885)
Q Consensus 315 s~iii-TtR~~~v~~~~--~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 360 (885)
.-||- |.|...+...+ .+ -...+.++.-+.+.-.++|+.++....-
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~ 620 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF 620 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC
Confidence 32333 33333332222 12 2456667777777778899988855443
No 271
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.40 E-value=0.023 Score=55.12 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=65.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccc--cccHHH------HHHHHHHHhcCCCC--CccccccH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQ--EYRTED------LLMRIINSFNIDSP--SNLEKMRE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~------~~~~il~~l~~~~~--~~~~~~~~ 272 (885)
+-.+++|+|+.|.|||||++.++... ....+.+++.-.. ..+... ...++++.++.... ......+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 34699999999999999999998752 2233444443211 111111 11224444443211 11112222
Q ss_pred -HHHHHHHHHHhcCceEEEEEecCC---CHHHHHHHHhhCCCC-CC-CcEEEEEecchHHh
Q 002750 273 -EDLERCLYQSLQGYSYLVVIDDVW---QKETWESLKRAFPDS-KN-GSRVILTTRIREVA 327 (885)
Q Consensus 273 -~~~~~~l~~~l~~~r~LlVlDdv~---~~~~~~~l~~~l~~~-~~-gs~iiiTtR~~~v~ 327 (885)
+...-.+.+.+-..+=++++|+.- |....+.+...+... .. +..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 223333555565666789999974 344444444444321 22 56788888876654
No 272
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.39 E-value=0.089 Score=56.22 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=34.0
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 183 VVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
++|....+.++.+.+..-...-.-|.|+|..|+||+++|+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777777776544333455789999999999999999764
No 273
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.39 E-value=0.0075 Score=59.41 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=59.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHH---HHHHHhcCCCCCccccccHHHHHHHHHH
Q 002750 205 SVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLM---RIINSFNIDSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---~il~~l~~~~~~~~~~~~~~~~~~~l~~ 281 (885)
.+|.|+|+.|+||||++..+... ........++.-- +.. +-... .++.+-.. ..+.....+.+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e-~~~--E~~~~~~~~~i~q~~v-------g~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIE-DPI--EFVHESKRSLINQREV-------GLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEc-CCc--cccccCccceeeeccc-------CCCccCHHHHHHH
Confidence 47899999999999999987765 2222333333321 111 10000 01110000 1112234455666
Q ss_pred HhcCceEEEEEecCCCHHHHHHHHhhCCCCCCCcEEEEEecchHHh
Q 002750 282 SLQGYSYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTTRIREVA 327 (885)
Q Consensus 282 ~l~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~ 327 (885)
.+....=.+++|++.+.+.+....... ..|..++.|+...++.
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 666556699999998877665544432 2355577777755544
No 274
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.38 E-value=0.0029 Score=70.08 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=39.9
Q ss_pred ccccccccHHHHHHHHh----cCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 182 NVVGFEDDANKLLAHLL----KEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 182 ~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+++|.++.++++++.|. ..+.+.+++.++||+|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999993 23456689999999999999999999874
No 275
>PRK14974 cell division protein FtsY; Provisional
Probab=96.37 E-value=0.024 Score=60.12 Aligned_cols=101 Identities=19% Similarity=0.235 Sum_probs=52.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc--HHHHHHHHHHHhcCCCCCccccccHHHH-HHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR--TEDLLMRIINSFNIDSPSNLEKMREEDL-ERCL 279 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~-~~~l 279 (885)
+..+|.++|++|+||||++..++..... ..+ .++.+.. +.+. ..+.+......++.+........+...+ ...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 4689999999999999988877754211 122 3444442 2332 2234555666665432211112222222 2222
Q ss_pred HHHh-cCceEEEEEecCCC----HHHHHHHHhh
Q 002750 280 YQSL-QGYSYLVVIDDVWQ----KETWESLKRA 307 (885)
Q Consensus 280 ~~~l-~~~r~LlVlDdv~~----~~~~~~l~~~ 307 (885)
.... .+.. ++++|.+.. ...++.+...
T Consensus 216 ~~~~~~~~D-vVLIDTaGr~~~~~~lm~eL~~i 247 (336)
T PRK14974 216 EHAKARGID-VVLIDTAGRMHTDANLMDELKKI 247 (336)
T ss_pred HHHHhCCCC-EEEEECCCccCCcHHHHHHHHHH
Confidence 2222 2333 899998753 3344555433
No 276
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.36 E-value=0.029 Score=53.41 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=43.0
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCcccc-ccHHHHHHHHHHHhc
Q 002750 206 VISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEK-MREEDLERCLYQSLQ 284 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~-~~~~~~~~~l~~~l~ 284 (885)
++.|.|.+|+||||+|..+.... .. .++++.....++. +....+......... .... .....+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~~~-e~~~ri~~h~~~R~~-~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPFDD-EMAARIAHHRQRRPA-HWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCChH-HHHHHHHHHHhcCCC-CCeEecccccHHHHHHhhcC
Confidence 68899999999999999998652 11 2344544443333 334444333322211 1111 111233444444343
Q ss_pred CceEEEEEecC
Q 002750 285 GYSYLVVIDDV 295 (885)
Q Consensus 285 ~~r~LlVlDdv 295 (885)
+.. ++++|.+
T Consensus 76 ~~~-~VlID~L 85 (170)
T PRK05800 76 PGR-CVLVDCL 85 (170)
T ss_pred CCC-EEEehhH
Confidence 322 6888886
No 277
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.36 E-value=0.032 Score=61.30 Aligned_cols=25 Identities=40% Similarity=0.456 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.+.++.++|++|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998887755
No 278
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.014 Score=67.67 Aligned_cols=130 Identities=15% Similarity=0.286 Sum_probs=80.0
Q ss_pred cccccccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE-------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLM 253 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 253 (885)
..++|-+..++.+.+.+... .....+...+||.|||||-||+.++.. .-+.=+..+-+ |+.+...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~------DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRI------DMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceee------chHHHHH
Confidence 56899999999999988532 234577888999999999999988764 11111223333 3333332
Q ss_pred -HHHHHhcCCCCCccccccHHHHHHHHHHHhcCceE-EEEEecCC--CHHHHHHHHhhCCCC----CC-------CcEEE
Q 002750 254 -RIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSY-LVVIDDVW--QKETWESLKRAFPDS----KN-------GSRVI 318 (885)
Q Consensus 254 -~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVlDdv~--~~~~~~~l~~~l~~~----~~-------gs~ii 318 (885)
.-+..+-+..| ..-+. ++ --.|-+.++.++| +|.||++. +++.+.-+.+.|.++ +. ++-||
T Consensus 563 kHsVSrLIGaPP-GYVGy--ee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiII 638 (786)
T COG0542 563 KHSVSRLIGAPP-GYVGY--EE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIII 638 (786)
T ss_pred HHHHHHHhCCCC-CCcee--cc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEE
Confidence 22333333333 11111 11 2235566677777 88899997 567788888887654 22 35567
Q ss_pred EEec
Q 002750 319 LTTR 322 (885)
Q Consensus 319 iTtR 322 (885)
+||.
T Consensus 639 mTSN 642 (786)
T COG0542 639 MTSN 642 (786)
T ss_pred Eecc
Confidence 7776
No 279
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.35 E-value=0.02 Score=56.33 Aligned_cols=83 Identities=23% Similarity=0.152 Sum_probs=44.8
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccc---eeEEEeccccccHHHHHHHHHHHhcC-CCCCccccccHHHHHHHHHH
Q 002750 206 VISIFGMGGLGKTTLARKLYHHNDVKHKFA---CCAWVSVSQEYRTEDLLMRIINSFNI-DSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~~~~l~~ 281 (885)
||+|.|++|+||||+|+.+...... .... ....++............. -..... .........+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 7999999999999999999875221 1111 2333333332222222221 111111 11122355677777777777
Q ss_pred HhcCceEEE
Q 002750 282 SLQGYSYLV 290 (885)
Q Consensus 282 ~l~~~r~Ll 290 (885)
..+++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666665433
No 280
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.069 Score=61.57 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=99.9
Q ss_pred cccccccccHHH---HHHHHhcCC-------CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHH
Q 002750 181 ENVVGFEDDANK---LLAHLLKED-------PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTED 250 (885)
Q Consensus 181 ~~~vGr~~~~~~---l~~~L~~~~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 250 (885)
.++.|-|+.+++ +++.|..++ .-++=+.++|++|.|||-||++++.... +-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH-----
Confidence 357787765555 455554431 2346688999999999999999998732 334555432
Q ss_pred HHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH-----------------HHHHHHHhhCCCCC-
Q 002750 251 LLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK-----------------ETWESLKRAFPDSK- 312 (885)
Q Consensus 251 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-----------------~~~~~l~~~l~~~~- 312 (885)
+.++.+... ....+.+.....-.+.+.++.+|+++.. ..+.++...+....
T Consensus 379 ---EFvE~~~g~--------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ---EFVEMFVGV--------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ---HHHHHhccc--------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 111111110 1111222222233456778888887632 22344444443322
Q ss_pred -CCcEEEEEecchHHhhcc----CCCCceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHH
Q 002750 313 -NGSRVILTTRIREVAERS----DERTHAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 313 -~gs~iiiTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 383 (885)
.+.-++-+|+..++.... +--+..+.++.-+.....++|..++-....+ .+..++.+ |+.+.-|.+=|.
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 233334455545443322 1124567788888888899999888554432 33455566 888888877543
No 281
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.35 E-value=0.017 Score=56.90 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCceEEEEEecCC---CHHHHHHHHhhCCC--CCCCcEEEEEecchHHhhcc
Q 002750 273 EDLERCLYQSLQGYSYLVVIDDVW---QKETWESLKRAFPD--SKNGSRVILTTRIREVAERS 330 (885)
Q Consensus 273 ~~~~~~l~~~l~~~r~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~iiiTtR~~~v~~~~ 330 (885)
++-.-.+.+.+-..+-+|+-|+-- |.+.-+.+...+.. ...|..||+.|.+..+|..+
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 334455777777788899999853 23333334433332 23477899999999999876
No 282
>PRK13695 putative NTPase; Provisional
Probab=96.33 E-value=0.011 Score=57.02 Aligned_cols=22 Identities=45% Similarity=0.523 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
-++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998876
No 283
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.056 Score=59.59 Aligned_cols=131 Identities=15% Similarity=0.218 Sum_probs=79.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
..=|.++|++|.|||-||++|++. .+-+| +++-.. .++...- +.+...+...+++.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP--------ELlNkYV--------GESErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP--------ELLNKYV--------GESERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH--------HHHHHHh--------hhHHHHHHHHHHHhh
Confidence 455789999999999999999998 44444 444321 1111111 112233334444444
Q ss_pred cCceEEEEEecCCCH-------------HHHHHHHhhCCC--CCCCcEEEEEecchHHhhcc---CC-CCceeecCCCCh
Q 002750 284 QGYSYLVVIDDVWQK-------------ETWESLKRAFPD--SKNGSRVILTTRIREVAERS---DE-RTHAYELPFLRP 344 (885)
Q Consensus 284 ~~~r~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~gs~iiiTtR~~~v~~~~---~~-~~~~~~l~~L~~ 344 (885)
...+++|+||.++.. ....++..-+.. ...|.-||-.|...++.... .+ -...+-++.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 577899999998742 223445444443 34677777777766654332 11 234566777778
Q ss_pred hhHHHHHHHHHhc
Q 002750 345 DESWKLFCEKAFQ 357 (885)
Q Consensus 345 ~e~~~lf~~~~~~ 357 (885)
+|-.++++.....
T Consensus 682 ~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 682 EERVAILKTITKN 694 (802)
T ss_pred HHHHHHHHHHhcc
Confidence 8888888887753
No 284
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.31 E-value=0.14 Score=48.63 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=28.5
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHH
Q 002750 207 ISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTE 249 (885)
Q Consensus 207 v~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 249 (885)
+.|.|.+|+|||++|.++... ....++++.-.+.++.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e 39 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE 39 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH
Confidence 679999999999999998754 12356677766666553
No 285
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.30 E-value=0.026 Score=54.61 Aligned_cols=120 Identities=18% Similarity=0.101 Sum_probs=60.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcC--CCCCc---------ccccc
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNI--DSPSN---------LEKMR 271 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~~~~~---------~~~~~ 271 (885)
.-.+++|+|+.|.|||||++.+..... .-.+.+++.-. +........-..++. +.+.- ....+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 346899999999999999999987521 12233443321 111111111111111 00000 01111
Q ss_pred H-HHHHHHHHHHhcCceEEEEEecCCC---HHHHHHHHhhCCCCCCCcEEEEEecchHHhh
Q 002750 272 E-EDLERCLYQSLQGYSYLVVIDDVWQ---KETWESLKRAFPDSKNGSRVILTTRIREVAE 328 (885)
Q Consensus 272 ~-~~~~~~l~~~l~~~r~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~ 328 (885)
. +...-.+.+.+-.++=++++|+... ....+.+...+.....+..||++|.+.....
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 1 2222334555556667899999753 3333333333322123567888888776654
No 286
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.30 E-value=0.0089 Score=67.02 Aligned_cols=75 Identities=24% Similarity=0.312 Sum_probs=51.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHH
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 281 (885)
+..+++.++|++|+||||||+-++++. .| .++=+++|+.-+...+-..|...+.....- .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l---~------------ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVL---D------------ 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcccc---c------------
Confidence 456899999999999999999999862 22 356677777666666555555554432210 0
Q ss_pred HhcCceEEEEEecCCC
Q 002750 282 SLQGYSYLVVIDDVWQ 297 (885)
Q Consensus 282 ~l~~~r~LlVlDdv~~ 297 (885)
-.+++.-+|+|.++-
T Consensus 384 -adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 384 -ADSRPVCLVIDEIDG 398 (877)
T ss_pred -cCCCcceEEEecccC
Confidence 015677899999974
No 287
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.28 E-value=0.079 Score=63.20 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=37.9
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..++|+...+.++.+.+..-.....-|.|+|..|+|||++|+.+.+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 46899999999888777543333456889999999999999999875
No 288
>PTZ00035 Rad51 protein; Provisional
Probab=96.28 E-value=0.024 Score=60.57 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=45.1
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccc----ccccceeEEEeccccccHHHHHHHHHHHhcC
Q 002750 192 KLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDV----KHKFACCAWVSVSQEYRTEDLLMRIINSFNI 261 (885)
Q Consensus 192 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 261 (885)
.+-+.|..+=+...++.|+|++|+||||++..++-.... .+.-..++|++....++.++ +..+++.++.
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 344445444346789999999999999999988643221 11223577999887777766 3444555443
No 289
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.27 E-value=0.055 Score=51.62 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=59.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccc-ccc--cc---eeEEEeccccccHHHHHHHHHHHhcCCCCCccccccH-HHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDV-KHK--FA---CCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMRE-EDL 275 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~-~~~ 275 (885)
.-.+++|+|+.|.|||||++.+...... .+. ++ .+.++.-........+...+... .. ...+. +..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~----~~---~~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP----WD---DVLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc----CC---CCCCHHHHH
Confidence 3468999999999999999999875221 111 11 12222211111111222222210 11 11111 223
Q ss_pred HHHHHHHhcCceEEEEEecCC---CHHHHHHHHhhCCCCCCCcEEEEEecchHHhh
Q 002750 276 ERCLYQSLQGYSYLVVIDDVW---QKETWESLKRAFPDSKNGSRVILTTRIREVAE 328 (885)
Q Consensus 276 ~~~l~~~l~~~r~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~ 328 (885)
.-.+.+.+-.++=++++|+.- |....+.+...+... +..||++|.+.....
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 334455555566688999864 333334443333322 356888888766554
No 290
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.27 E-value=0.024 Score=60.51 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=45.4
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccc----ccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 192 KLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKH----KFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 192 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
.+.+.|..+=+...++-|+|++|+|||+++..++....... .-..++|++....++++.+.+ +++.++
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 33444433334578999999999999999998875422211 114789999988888776543 444443
No 291
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.27 E-value=0.074 Score=56.90 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=37.7
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+.++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45899999999888887654333456779999999999999999854
No 292
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.27 E-value=0.022 Score=58.29 Aligned_cols=97 Identities=22% Similarity=0.207 Sum_probs=60.5
Q ss_pred HHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHH-h---cCCCCCccccc
Q 002750 195 AHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINS-F---NIDSPSNLEKM 270 (885)
Q Consensus 195 ~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~-l---~~~~~~~~~~~ 270 (885)
+.|-.+=+..+++=|+|+.|+||||+|.+++-. .+..-..++|++....++++.+.. +... + ....+ ....
T Consensus 51 ~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~--~~~e 125 (279)
T COG0468 51 EALGGGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQP--DTGE 125 (279)
T ss_pred HHhcCCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecC--CCHH
Confidence 334334456789999999999999999998765 344444789999999888876543 3332 2 21112 1111
Q ss_pred cHHHHHHHHHHHhcCceEEEEEecCC
Q 002750 271 REEDLERCLYQSLQGYSYLVVIDDVW 296 (885)
Q Consensus 271 ~~~~~~~~l~~~l~~~r~LlVlDdv~ 296 (885)
...+++..+.+....+--|+|+|.+-
T Consensus 126 ~q~~i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 126 QQLEIAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecCc
Confidence 22334444444444434588899873
No 293
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.033 Score=59.36 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=52.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc--HHHHHHHHHHHhcCCCCCccccccHHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR--TEDLLMRIINSFNIDSPSNLEKMREEDLERCLY 280 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~ 280 (885)
+.++|+|+|++|+||||++..++... ...-..+..++.. .+. ..+-+......++.+.. ...+...+...+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~---v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVI---AVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEE---ecCCHHHHHHHHH
Confidence 45899999999999999999997652 2221234455543 222 22223333333332211 1224445554444
Q ss_pred HHhcC-ceEEEEEecCCC----HHHHHHHHhhCC
Q 002750 281 QSLQG-YSYLVVIDDVWQ----KETWESLKRAFP 309 (885)
Q Consensus 281 ~~l~~-~r~LlVlDdv~~----~~~~~~l~~~l~ 309 (885)
..-.. ..=++++|-... ......+...+.
T Consensus 314 ~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 314 YFKEEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred HHHhccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 33221 123778887642 334555554443
No 294
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.25 E-value=0.041 Score=60.62 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=48.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc-ccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE-YRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 281 (885)
.+.+|.++|++|+||||+|..++...... .+ .+..|++... ....+.+..+..+++.+........+...+.....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 47899999999999999999998653221 12 3444444321 122344555666655432111111222232333333
Q ss_pred HhcCceEEEEEecCC
Q 002750 282 SLQGYSYLVVIDDVW 296 (885)
Q Consensus 282 ~l~~~r~LlVlDdv~ 296 (885)
...+. =++|+|..-
T Consensus 172 ~~~~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKKA-DVIIVDTAG 185 (437)
T ss_pred HhhcC-CEEEEECCC
Confidence 33333 467888763
No 295
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.25 E-value=0.024 Score=54.61 Aligned_cols=22 Identities=50% Similarity=0.625 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999988865
No 296
>PRK06696 uridine kinase; Validated
Probab=96.24 E-value=0.0049 Score=62.11 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=34.8
Q ss_pred cccccHHHHHHHHhc-CCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 185 GFEDDANKLLAHLLK-EDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 185 Gr~~~~~~l~~~L~~-~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.|+..+++|.+.+.. ..+...+|+|.|.+|+||||+|+.+.+.
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 356667778877764 3446789999999999999999999876
No 297
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.17 Score=49.24 Aligned_cols=146 Identities=17% Similarity=0.298 Sum_probs=83.8
Q ss_pred ccc-ccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHH
Q 002750 183 VVG-FEDDANKLLAHLLKE-----------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTED 250 (885)
Q Consensus 183 ~vG-r~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 250 (885)
+|| .+..+++|.+.+.-+ -.+++-+.++|++|.|||-||+.|+++ .++.|+.+|.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 444 566666666554211 135677889999999999999999976 23456666642 1
Q ss_pred HHHHHHHHhcCCCCCccccccHHHHHHHHHHH----hcCceEEEEEecCCCH-------------HH---HHHHHhhCCC
Q 002750 251 LLMRIINSFNIDSPSNLEKMREEDLERCLYQS----LQGYSYLVVIDDVWQK-------------ET---WESLKRAFPD 310 (885)
Q Consensus 251 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~----l~~~r~LlVlDdv~~~-------------~~---~~~l~~~l~~ 310 (885)
+.++.+. . . .+.+++. -...+-.|+.|++++. +. .-++...+..
T Consensus 217 lvqk~ig---e--g-----------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 217 LVQKYIG---E--G-----------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred HHHHHhh---h--h-----------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 1111111 0 0 0111111 1234557888887642 11 1223333432
Q ss_pred --CCCCcEEEEEecchHHhhcc----CCCCceeecCCCChhhHHHHHHHHH
Q 002750 311 --SKNGSRVILTTRIREVAERS----DERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 311 --~~~gs~iiiTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
....-+||+.|..-++.... +-....++.++-+++.-.++++-+.
T Consensus 281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 34577899988866665433 1234567888888887778877655
No 298
>PRK10867 signal recognition particle protein; Provisional
Probab=96.16 E-value=0.042 Score=60.37 Aligned_cols=25 Identities=44% Similarity=0.539 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.+.+|.++|++|+||||.+..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999988777654
No 299
>PRK07667 uridine kinase; Provisional
Probab=96.13 E-value=0.007 Score=59.37 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 190 ANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 190 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.+.+.+.+....+...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46677777666666789999999999999999999875
No 300
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.11 E-value=0.031 Score=56.84 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=58.1
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCC-------
Q 002750 193 LLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPS------- 265 (885)
Q Consensus 193 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~------- 265 (885)
+-+.|..+=+...++.|+|.+|+|||++|.++... ...+=..++|++..+. .+.+.+++ .+++.....
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l 88 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYL 88 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCc
Confidence 33444334356789999999999999999998654 1122346889988654 34444443 333321110
Q ss_pred ----------ccccccHHHHHHHHHHHhcC-ceEEEEEecCC
Q 002750 266 ----------NLEKMREEDLERCLYQSLQG-YSYLVVIDDVW 296 (885)
Q Consensus 266 ----------~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~ 296 (885)
.......+.+...+.+.+.. +.-++|+|.+.
T Consensus 89 ~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 89 RIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred eEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 00112335566666666643 44489999865
No 301
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.06 E-value=0.031 Score=59.50 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=46.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccc---c-cccceeEEEeccccccHHHHHHHHHHHhcC
Q 002750 192 KLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDV---K-HKFACCAWVSVSQEYRTEDLLMRIINSFNI 261 (885)
Q Consensus 192 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~-~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 261 (885)
.+-+.|..+=....++-|+|++|+|||+++..++-.... . +.-..++|++....++++++. ++++.++.
T Consensus 111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 344444444345789999999999999999877643111 1 112368999999988887754 55666554
No 302
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.04 E-value=0.39 Score=50.27 Aligned_cols=152 Identities=8% Similarity=0.042 Sum_probs=89.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcc--------cccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHND--------VKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREED 274 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~--------~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~ 274 (885)
-..+..++|..|.||+++|..+.+... ...|-+...++.... .....++
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-----------------------~~i~vd~ 73 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-----------------------KDLSKSE 73 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-----------------------CcCCHHH
Confidence 346777999999999999998876521 011111223332111 1112233
Q ss_pred HHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHHhhCCCCCCCcEEEEEec-chHHhhccCCCCceeecCCCChhh
Q 002750 275 LERCLYQSL-----QGYSYLVVIDDVWQK--ETWESLKRAFPDSKNGSRVILTTR-IREVAERSDERTHAYELPFLRPDE 346 (885)
Q Consensus 275 ~~~~l~~~l-----~~~r~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtR-~~~v~~~~~~~~~~~~l~~L~~~e 346 (885)
+.+.....- .+.+=++|+|+++.. .....+...+..-+.++.+|++|. ...+..........+++.++++++
T Consensus 74 Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~ 153 (299)
T PRK07132 74 FLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQK 153 (299)
T ss_pred HHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHH
Confidence 332222220 146668899998643 567788888887777787777664 333433334567889999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHH
Q 002750 347 SWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVV 385 (885)
Q Consensus 347 ~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 385 (885)
..+.+... + . + ++.+..++...+|.-.|+..
T Consensus 154 l~~~l~~~--~-~--~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 154 ILAKLLSK--N-K--E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHHHHc--C-C--C---hhHHHHHHHHcCCHHHHHHH
Confidence 98877654 1 1 1 24455666666663344444
No 303
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.03 E-value=0.04 Score=62.17 Aligned_cols=58 Identities=17% Similarity=0.327 Sum_probs=42.7
Q ss_pred ccccccccccHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEe
Q 002750 180 EENVVGFEDDANKLLAHLLKE---DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVS 241 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 241 (885)
.++++--...++++..||... ....+++.+.||+|+||||.++.+++.. .|+.+-|.+
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 345555567788888888653 3346799999999999999999998762 345555754
No 304
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.03 E-value=0.052 Score=52.16 Aligned_cols=125 Identities=16% Similarity=0.237 Sum_probs=71.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecc-------------------ccc-----------------
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVS-------------------QEY----------------- 246 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~----------------- 246 (885)
+..|++|+|++|+|||||.+.+..=+.. -++.+|+.-. +.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 4569999999999999999988653211 1234444321 011
Q ss_pred --------cHHHHHHHHHHHhcCCCCCc--ccccc-HHHHHHHHHHHhcCceEEEEEecCC---CHHHHHHHHhhCCC-C
Q 002750 247 --------RTEDLLMRIINSFNIDSPSN--LEKMR-EEDLERCLYQSLQGYSYLVVIDDVW---QKETWESLKRAFPD-S 311 (885)
Q Consensus 247 --------~~~~~~~~il~~l~~~~~~~--~~~~~-~~~~~~~l~~~l~~~r~LlVlDdv~---~~~~~~~l~~~l~~-~ 311 (885)
.+++...++++..+.....+ +...+ -.+-.-.|.+.|.-++=++.||..- |++...++...+.. .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 12334445555555432100 01111 2333445677777777799999985 45555555444443 2
Q ss_pred CCCcEEEEEecchHHhhcc
Q 002750 312 KNGSRVILTTRIREVAERS 330 (885)
Q Consensus 312 ~~gs~iiiTtR~~~v~~~~ 330 (885)
..|-.+|+.|.....|+.+
T Consensus 184 ~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HcCCeEEEEechhHHHHHh
Confidence 3466677788877776655
No 305
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.01 E-value=0.027 Score=52.37 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=61.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccc---cccHHHHHHHHHHHhcC---CCC-----Cccc--ccc
Q 002750 205 SVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQ---EYRTEDLLMRIINSFNI---DSP-----SNLE--KMR 271 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~~l~~---~~~-----~~~~--~~~ 271 (885)
..|-|++..|.||||+|....-+ ..++=..+.++..-+ .......+..+ ..+.. ... .... ...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 47889999999999999877654 222222344433322 23333333333 11100 000 0000 001
Q ss_pred HHHHHHHHHHHhcCceE-EEEEecCCCH-----HHHHHHHhhCCCCCCCcEEEEEecchH
Q 002750 272 EEDLERCLYQSLQGYSY-LVVIDDVWQK-----ETWESLKRAFPDSKNGSRVILTTRIRE 325 (885)
Q Consensus 272 ~~~~~~~l~~~l~~~r~-LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iiiTtR~~~ 325 (885)
.....+..++.+....| |+|||++-.. -..+.+...+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11222233334444343 9999998533 234556666666667788999999753
No 306
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.00 E-value=0.015 Score=60.03 Aligned_cols=87 Identities=24% Similarity=0.332 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHH-hcCCCCCcccc
Q 002750 191 NKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINS-FNIDSPSNLEK 269 (885)
Q Consensus 191 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~-l~~~~~~~~~~ 269 (885)
..+++.+... .+-+.++|+.|+|||++++...+...- ..| .+.-++.+...+...+ ..++++ +..........
T Consensus 23 ~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~~~~gP 96 (272)
T PF12775_consen 23 SYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQL-QKIIESKLEKRRGRVYGP 96 (272)
T ss_dssp HHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHH-HHCCCTTECECTTEEEEE
T ss_pred HHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCCCCCCC
Confidence 4455555544 355689999999999999998865221 122 2334555554344333 233322 11111100110
Q ss_pred ccHHHHHHHHHHHhcCceEEEEEecCC
Q 002750 270 MREEDLERCLYQSLQGYSYLVVIDDVW 296 (885)
Q Consensus 270 ~~~~~~~~~l~~~l~~~r~LlVlDdv~ 296 (885)
-.+|+.++.+||+.
T Consensus 97 -------------~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 97 -------------PGGKKLVLFIDDLN 110 (272)
T ss_dssp -------------ESSSEEEEEEETTT
T ss_pred -------------CCCcEEEEEecccC
Confidence 13788999999985
No 307
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.99 E-value=0.036 Score=54.42 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=53.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
-+++.|.|++|.||||+++.+... ....-..++++.-+. .- ...+.+..+.... ............-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~g~~v~~~apT~-~A----a~~L~~~~~~~a~------Ti~~~l~~~~~~~ 84 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAAGKRVIGLAPTN-KA----AKELREKTGIEAQ------TIHSFLYRIPNGD 84 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHTT--EEEEESSH-HH----HHHHHHHHTS-EE------EHHHHTTEECCEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhCCCeEEEECCcH-HH----HHHHHHhhCcchh------hHHHHHhcCCccc
Confidence 368889999999999999988765 222212334443222 11 1222222222110 1000000000000
Q ss_pred ------cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecchHH
Q 002750 284 ------QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRIREV 326 (885)
Q Consensus 284 ------~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~~~v 326 (885)
..++-+||+|++.- ...+..+...... .|+++|+.--..+.
T Consensus 85 ~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL 133 (196)
T PF13604_consen 85 DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQL 133 (196)
T ss_dssp CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSH
T ss_pred ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchh
Confidence 12234999999974 4567777777664 46788887654443
No 308
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.98 E-value=0.16 Score=58.10 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=46.8
Q ss_pred ccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc
Q 002750 180 EENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE 245 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 245 (885)
...++|....++++.+.+..-.....-|.|+|..|+|||++|+.+.+... ..-...+.|++..-
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccC
Confidence 45789999999999988866544456788999999999999999987522 11123455666543
No 309
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.96 E-value=0.055 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 310
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.031 Score=53.78 Aligned_cols=120 Identities=20% Similarity=0.235 Sum_probs=61.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcC--CCCCcccc--------ccH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNI--DSPSNLEK--------MRE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~~~~~~~~--------~~~ 272 (885)
.-.+++|+|+.|.|||||++.++... ....+.+++.-....... ..+...++. +.+.-... .+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 34689999999999999999998752 123344444321111000 011111111 00000000 111
Q ss_pred H-HHHHHHHHHhcCceEEEEEecCC---CHHHHHHHHhhCCCC-CCCcEEEEEecchHHhh
Q 002750 273 E-DLERCLYQSLQGYSYLVVIDDVW---QKETWESLKRAFPDS-KNGSRVILTTRIREVAE 328 (885)
Q Consensus 273 ~-~~~~~l~~~l~~~r~LlVlDdv~---~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~~ 328 (885)
. ...-.+.+.+..++=++++|+.. |....+.+...+... ..|..||++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2 22234556666667799999975 333334444443321 22567888888776554
No 311
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.93 E-value=0.003 Score=62.19 Aligned_cols=61 Identities=28% Similarity=0.307 Sum_probs=27.5
Q ss_pred CCCccEEEEecc--CCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEeecC
Q 002750 779 LPNLECLSLEDS--NLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVD 839 (885)
Q Consensus 779 l~~L~~L~L~~~--~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 839 (885)
+++|+.|.++.| ............+|+|++|+|++|.+....-......+++|..|++.++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 355555555555 3333222233344555555555555543221122233445555555533
No 312
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.049 Score=52.30 Aligned_cols=120 Identities=17% Similarity=0.182 Sum_probs=60.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc--ccHHHHHHHHHHHhcC--CCCCcccc------ccH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE--YRTEDLLMRIINSFNI--DSPSNLEK------MRE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~--~~~~~~~~------~~~ 272 (885)
.-.+++|+|+.|.|||||.+.++.-.. ...+.+++.-... ...... . ..++. ..+.-... .+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~-~---~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL-R---KNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH-H---hhEEEEcCCchhccchHHHHhhCH
Confidence 356899999999999999999987521 2234444332110 011111 1 11110 00000000 111
Q ss_pred -HHHHHHHHHHhcCceEEEEEecCC---CHHHHHHHHhhCCCCCCCcEEEEEecchHHhhc
Q 002750 273 -EDLERCLYQSLQGYSYLVVIDDVW---QKETWESLKRAFPDSKNGSRVILTTRIREVAER 329 (885)
Q Consensus 273 -~~~~~~l~~~l~~~r~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~ 329 (885)
+...-.+.+.+-.++=++++|+.. |....+.+...+.....+..||++|.+......
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 112223455555566799999975 333333333333322224678888887766543
No 313
>PRK06762 hypothetical protein; Provisional
Probab=95.92 E-value=0.026 Score=53.90 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..+|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 314
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.92 E-value=0.029 Score=56.20 Aligned_cols=123 Identities=14% Similarity=0.233 Sum_probs=69.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcc-ccc----------cc---ceeEEEecccccc------H---------------
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHND-VKH----------KF---ACCAWVSVSQEYR------T--------------- 248 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~-~~~----------~f---~~~~wv~~~~~~~------~--------------- 248 (885)
..+++|+||.|.|||||.+.+..-.. .++ .+ ..+.||.-...++ .
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 47999999999999999999987210 000 01 2456654211111 1
Q ss_pred -------HHHHHHHHHHhcCCCC--CccccccHHHHHH-HHHHHhcCceEEEEEecCC---CH---HHHHHHHhhCCCCC
Q 002750 249 -------EDLLMRIINSFNIDSP--SNLEKMREEDLER-CLYQSLQGYSYLVVIDDVW---QK---ETWESLKRAFPDSK 312 (885)
Q Consensus 249 -------~~~~~~il~~l~~~~~--~~~~~~~~~~~~~-~l~~~l~~~r~LlVlDdv~---~~---~~~~~l~~~l~~~~ 312 (885)
.+...+.++..+...- ......+-.+.++ .+.+.|..++=|++||+-- |. .....+...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 1334445555544221 1122333344433 3566677888899999853 22 3344444444433
Q ss_pred CCcEEEEEecchHHhh
Q 002750 313 NGSRVILTTRIREVAE 328 (885)
Q Consensus 313 ~gs~iiiTtR~~~v~~ 328 (885)
|..||+.|.+-....
T Consensus 189 -g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 -GKTVLMVTHDLGLVM 203 (254)
T ss_pred -CCEEEEEeCCcHHhH
Confidence 788999998766544
No 315
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.91 E-value=0.043 Score=58.46 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=44.9
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc----cccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 193 LLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVK----HKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 193 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
+...|..+=+...++-|+|++|+|||+++..++...... ..-..++||+....++.+.+. ++++.++
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 334443333457899999999999999999887552211 111379999998888877654 4445444
No 316
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.91 E-value=0.0025 Score=37.23 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=13.7
Q ss_pred cccEEEecCCCCCCCCccccC
Q 002750 619 HLKYLRLRNSPIDNLPPSIEK 639 (885)
Q Consensus 619 ~Lr~L~L~~~~i~~lp~~i~~ 639 (885)
+|++|+|++|.|+.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777766666554
No 317
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.86 E-value=0.0071 Score=71.81 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=57.9
Q ss_pred CceEEEEEecCCC---HHHHHHH----HhhCCCCCCCcEEEEEecchHHhhccCCCCce--eecCCCChhhHHHHHHHHH
Q 002750 285 GYSYLVVIDDVWQ---KETWESL----KRAFPDSKNGSRVILTTRIREVAERSDERTHA--YELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 285 ~~r~LlVlDdv~~---~~~~~~l----~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~--~~l~~L~~~e~~~lf~~~~ 355 (885)
..+-|+++|++.. ......+ ...+. ..|+.+|+||....+.........+ ..+. ++. +......+..
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~p~Ykl~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLSPTYKLL 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCceEEEEC
Confidence 4678999999853 3333333 33332 2478899999988875543111111 1111 111 1111000001
Q ss_pred hcCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 002750 356 FQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLSKKKPQEWRIVRDHIWR 407 (885)
Q Consensus 356 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~~ 407 (885)
.+.. . ...|-+|++++ |+|-.+..-|..+......+++.++..+..
T Consensus 477 ~G~~--g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 477 KGIP--G---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CCCC--C---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 1 34577788777 788877777776664444456666655544
No 318
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.84 E-value=0.058 Score=57.91 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=48.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccc-cccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQ-EYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 281 (885)
+..++.++|+.|+||||++.++............+..++... .....+-+....+.++.+... ..+..++...+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~---~~~~~~l~~~l~- 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA---VKDGGDLQLALA- 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe---cCCcccHHHHHH-
Confidence 347999999999999999999987521111123455555332 123344455555555543221 111222333333
Q ss_pred HhcCceEEEEEecCC
Q 002750 282 SLQGYSYLVVIDDVW 296 (885)
Q Consensus 282 ~l~~~r~LlVlDdv~ 296 (885)
.+.++. ++++|...
T Consensus 212 ~l~~~D-lVLIDTaG 225 (374)
T PRK14722 212 ELRNKH-MVLIDTIG 225 (374)
T ss_pred HhcCCC-EEEEcCCC
Confidence 344444 56699985
No 319
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.83 E-value=0.075 Score=49.25 Aligned_cols=103 Identities=19% Similarity=0.207 Sum_probs=56.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccH-HHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMRE-EDLERCLYQ 281 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~-~~~~~~l~~ 281 (885)
.-.+++|+|+.|.|||||++.+..... ...+.+|+.-.. .+..-. ..+. +...-.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~-----~lS~G~~~rv~lar 83 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE-----QLSGGEKMRLALAK 83 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc-----cCCHHHHHHHHHHH
Confidence 346899999999999999999987521 223444443110 000000 0111 122223445
Q ss_pred HhcCceEEEEEecCC---CHHHHHHHHhhCCCCCCCcEEEEEecchHHhh
Q 002750 282 SLQGYSYLVVIDDVW---QKETWESLKRAFPDSKNGSRVILTTRIREVAE 328 (885)
Q Consensus 282 ~l~~~r~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~ 328 (885)
.+-.++=++++|+.. |....+.+...+... +..||++|.+.+...
T Consensus 84 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 555555689999874 444444444444332 245777877665543
No 320
>PRK05973 replicative DNA helicase; Provisional
Probab=95.83 E-value=0.076 Score=53.23 Aligned_cols=150 Identities=16% Similarity=0.149 Sum_probs=74.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCC--------CccccccHH
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSP--------SNLEKMREE 273 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~~~~ 273 (885)
.+..++.|.|.+|+|||++|..+.... ...-..+++++.... ..++...+. +++.... ...+....+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~ 136 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICAD 136 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHH
Confidence 355789999999999999999887652 122234677776553 444444432 2222111 001112233
Q ss_pred HHHHHHHHHhcCceEEEEEecCCCH------HHHHHHHhhCCC--CCCCcEEEEEecchHHhhcc-CCCCceeecCCCCh
Q 002750 274 DLERCLYQSLQGYSYLVVIDDVWQK------ETWESLKRAFPD--SKNGSRVILTTRIREVAERS-DERTHAYELPFLRP 344 (885)
Q Consensus 274 ~~~~~l~~~l~~~r~LlVlDdv~~~------~~~~~l~~~l~~--~~~gs~iiiTtR~~~v~~~~-~~~~~~~~l~~L~~ 344 (885)
.++..+... .+.=++|+|-+... .....+...+.. ...|.-||+|+....-.+.- ...+..-.| .++.
T Consensus 137 ~ii~~l~~~--~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~~P~laDl-R~~~ 213 (237)
T PRK05973 137 YIIARLASA--PRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKPLPDIRDV-RLPN 213 (237)
T ss_pred HHHHHHHHh--hCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCCCChhhc-CCCC
Confidence 334444332 12348999987421 112222211211 24577788888744332221 000111111 2233
Q ss_pred hhHHHHHHHHHhcCC
Q 002750 345 DESWKLFCEKAFQSF 359 (885)
Q Consensus 345 ~e~~~lf~~~~~~~~ 359 (885)
+--..||.+.+|-..
T Consensus 214 ~~d~~~f~~~~~~~~ 228 (237)
T PRK05973 214 PLDLSLFDKACFLNN 228 (237)
T ss_pred hhhHHHhhhhheecC
Confidence 445677877776543
No 321
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.22 Score=53.51 Aligned_cols=153 Identities=13% Similarity=0.093 Sum_probs=79.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhc
Q 002750 205 SVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQ 284 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 284 (885)
|=-.++||||.|||+++.++++.. .|+ +.=+..+...+-.+ ++.++.. .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~yd-IydLeLt~v~~n~d-Lr~LL~~------------------------t- 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYD-IYDLELTEVKLDSD-LRHLLLA------------------------T- 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCc-eEEeeeccccCcHH-HHHHHHh------------------------C-
Confidence 456689999999999999999862 232 11122222111111 2222222 1
Q ss_pred CceEEEEEecCCCH--------------------HHHHHHHhhCC--CCCC-CcEE-EEEecchHHhhcc---CC-CCce
Q 002750 285 GYSYLVVIDDVWQK--------------------ETWESLKRAFP--DSKN-GSRV-ILTTRIREVAERS---DE-RTHA 336 (885)
Q Consensus 285 ~~r~LlVlDdv~~~--------------------~~~~~l~~~l~--~~~~-gs~i-iiTtR~~~v~~~~---~~-~~~~ 336 (885)
..+-+||+.|++-. -.+..+..++. ++.+ +-|| |+||...+-.+-. .+ ....
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 23345666666521 01223444443 2233 2344 5677755433221 12 2456
Q ss_pred eecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHH-hhhcCC
Q 002750 337 YELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLG-GLLSKK 393 (885)
Q Consensus 337 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~-~~l~~~ 393 (885)
+.+.-=+.+....|+........ + ..++.+|.+...|.-+.-..++ .++.++
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 78888888888888888775433 1 2445555555555544433444 444443
No 322
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.78 E-value=0.085 Score=57.19 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 002750 204 RSVISIFGMGGLGKTTLARKLYH 226 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~ 226 (885)
-.+++|+|++|+||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 46899999999999999999865
No 323
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.77 E-value=0.051 Score=54.82 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=32.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHH
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRI 255 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 255 (885)
+...++.|.|++|+||||+|.+++... .+.. ..+++++... +..++++.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 345699999999999999987765542 1222 3456777443 345555554
No 324
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.77 E-value=0.089 Score=57.48 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
...+|.++|++|+||||++.+++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888754
No 325
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.74 E-value=0.038 Score=55.97 Aligned_cols=27 Identities=41% Similarity=0.522 Sum_probs=24.1
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 201 DPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 201 ~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..+..+++|.|+.|+|||||++.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999875
No 326
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.74 E-value=0.094 Score=51.51 Aligned_cols=128 Identities=13% Similarity=0.200 Sum_probs=66.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcc-------------ccc-----ccc--eeEEEecccccc----HHHH-------
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHND-------------VKH-----KFA--CCAWVSVSQEYR----TEDL------- 251 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~-------------~~~-----~f~--~~~wv~~~~~~~----~~~~------- 251 (885)
.-.+++|+|.+|+|||||++.+..=.+ ... .|. ..+|-+-....+ +.++
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc
Confidence 457999999999999999999965210 000 111 122222111111 1111
Q ss_pred ---------HHHHHHHhcCCCC---CccccccHHH-HHHHHHHHhcCceEEEEEecCCC---HHHHHHHHhhCCC--CCC
Q 002750 252 ---------LMRIINSFNIDSP---SNLEKMREED-LERCLYQSLQGYSYLVVIDDVWQ---KETWESLKRAFPD--SKN 313 (885)
Q Consensus 252 ---------~~~il~~l~~~~~---~~~~~~~~~~-~~~~l~~~l~~~r~LlVlDdv~~---~~~~~~l~~~l~~--~~~ 313 (885)
..+++.+++.+.. .-....+-.+ -.-.+.+.+.-++=+||+|+.-. ...-..+...|.. ...
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~ 191 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER 191 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence 3445555554321 0011122222 23346677777777999999753 2222222222221 234
Q ss_pred CcEEEEEecchHHhhcc
Q 002750 314 GSRVILTTRIREVAERS 330 (885)
Q Consensus 314 gs~iiiTtR~~~v~~~~ 330 (885)
+-.+|+.|.+-.+...+
T Consensus 192 ~lt~l~IsHdl~~v~~~ 208 (252)
T COG1124 192 GLTYLFISHDLALVEHM 208 (252)
T ss_pred CceEEEEeCcHHHHHHH
Confidence 55688888888777665
No 327
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.72 E-value=0.046 Score=51.92 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=60.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc--ccHHHHHHHHHHHhcCCCCCccccccH-HHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE--YRTEDLLMRIINSFNIDSPSNLEKMRE-EDLERCL 279 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~-~~~~~~l 279 (885)
.-.+++|+|+.|.|||||.+.++... ....+.+++.-... .+..+... ..++.- ...+. +...-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-----~qLS~G~~qrl~l 93 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-----YQLSVGERQMVEI 93 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-----EecCHHHHHHHHH
Confidence 34689999999999999999998752 22344555532211 11111111 111110 00122 2223335
Q ss_pred HHHhcCceEEEEEecCC---CHHHHHHHHhhCCCC-CCCcEEEEEecchHHh
Q 002750 280 YQSLQGYSYLVVIDDVW---QKETWESLKRAFPDS-KNGSRVILTTRIREVA 327 (885)
Q Consensus 280 ~~~l~~~r~LlVlDdv~---~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~ 327 (885)
.+.+-.++=++++|+.. |....+.+...+... ..|..||++|.+....
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 55555566688999974 334444444444321 2366788888876643
No 328
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.71 E-value=0.071 Score=51.13 Aligned_cols=101 Identities=18% Similarity=0.088 Sum_probs=55.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEec------cccccHHHHHHHHHHHhcCCCCCccccccH-HHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSV------SQEYRTEDLLMRIINSFNIDSPSNLEKMRE-EDL 275 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~------~~~~~~~~~~~~il~~l~~~~~~~~~~~~~-~~~ 275 (885)
.-.+++|+|+.|+|||||++.+..-.. ...+.+++.- .+... .+. +..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~----------------------LSgGq~q 78 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID----------------------LSGGELQ 78 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC----------------------CCHHHHH
Confidence 346999999999999999999986421 1223333221 11100 111 222
Q ss_pred HHHHHHHhcCceEEEEEecCC---CHHHHHHHHhhCCC--CCCCcEEEEEecchHHhh
Q 002750 276 ERCLYQSLQGYSYLVVIDDVW---QKETWESLKRAFPD--SKNGSRVILTTRIREVAE 328 (885)
Q Consensus 276 ~~~l~~~l~~~r~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~iiiTtR~~~v~~ 328 (885)
.-.+.+.+..++=++++|+.- |....+.+...+.. ...+..||++|.+.....
T Consensus 79 rv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 79 RVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 333455555566689999974 33433333333332 112255777777765544
No 329
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.71 E-value=0.036 Score=56.43 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=38.7
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHH
Q 002750 193 LLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMR 254 (885)
Q Consensus 193 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (885)
+-+.|..+=+...++.|.|++|+|||++|.++.... ...-..++|++... +++.+.+.
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~--~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEEEeeC--CHHHHHHH
Confidence 334444443467899999999999999999876541 12234688888765 34444444
No 330
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.70 E-value=0.035 Score=57.92 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=28.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecc
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVS 243 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 243 (885)
..+++.|+|++|+||||++..++........-..+..++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 45799999999999999999887653222111245556543
No 331
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.094 Score=56.83 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=55.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccc--cccceeEEEeccccccHH--HHHHHHHHHhcCCCCCccccccHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVK--HKFACCAWVSVSQEYRTE--DLLMRIINSFNIDSPSNLEKMREEDLERC 278 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~--~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 278 (885)
..++|.++|+.|+||||.+.+++...... .+-..+..+++. .+... ..+....+.++.+.. ...+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~---~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK---AIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE---eeCcHHHHHHH
Confidence 46799999999999999998887652211 111234555544 33322 234455555554322 11233444444
Q ss_pred HHHHhcCceEEEEEecCCC----HHHHHHHHhhCC
Q 002750 279 LYQSLQGYSYLVVIDDVWQ----KETWESLKRAFP 309 (885)
Q Consensus 279 l~~~l~~~r~LlVlDdv~~----~~~~~~l~~~l~ 309 (885)
+.+. ...-++++|.+.. ...+..+...+.
T Consensus 249 L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 249 ITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred HHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 4443 3345889998842 233445555444
No 332
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.67 E-value=0.08 Score=53.67 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=66.2
Q ss_pred HHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCC------C---
Q 002750 194 LAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDS------P--- 264 (885)
Q Consensus 194 ~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------~--- 264 (885)
-+.|..+=+...++.|.|++|+||||+|..+.... ...-..++|++.... .+.+... +.+++... .
T Consensus 10 D~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~ 84 (229)
T TIGR03881 10 DKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLV 84 (229)
T ss_pred HHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEE
Confidence 33333333456899999999999999999876531 122346788887543 2333222 22222110 0
Q ss_pred ------------CccccccHHHHHHHHHHHhcC---ceEEEEEecCCC-----HHHHHHHHhhCCC--CCCCcEEEEEec
Q 002750 265 ------------SNLEKMREEDLERCLYQSLQG---YSYLVVIDDVWQ-----KETWESLKRAFPD--SKNGSRVILTTR 322 (885)
Q Consensus 265 ------------~~~~~~~~~~~~~~l~~~l~~---~r~LlVlDdv~~-----~~~~~~l~~~l~~--~~~gs~iiiTtR 322 (885)
......+.+++...+.+..+. +.-.+|+|.+.. ......+...+.. ...|..+|+|+.
T Consensus 85 i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~ 164 (229)
T TIGR03881 85 IIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQ 164 (229)
T ss_pred EEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 000123456666666665532 345789998752 2111222111111 235788888886
Q ss_pred c
Q 002750 323 I 323 (885)
Q Consensus 323 ~ 323 (885)
.
T Consensus 165 ~ 165 (229)
T TIGR03881 165 Y 165 (229)
T ss_pred c
Confidence 3
No 333
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.0085 Score=54.39 Aligned_cols=24 Identities=42% Similarity=0.419 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcCc
Q 002750 205 SVISIFGMGGLGKTTLARKLYHHN 228 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~~ 228 (885)
--|.|.|++|+||||+++++.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 357899999999999999998763
No 334
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.029 Score=53.81 Aligned_cols=22 Identities=50% Similarity=0.652 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999987
No 335
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.62 E-value=0.036 Score=59.90 Aligned_cols=51 Identities=27% Similarity=0.171 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccc
Q 002750 192 KLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQ 244 (885)
Q Consensus 192 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 244 (885)
++-+.|..+=....++.|.|.+|+|||||+..++.. ....-..++|++..+
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE 120 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE 120 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc
Confidence 444444333334679999999999999999999865 222234677887654
No 336
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.59 E-value=0.067 Score=55.42 Aligned_cols=133 Identities=21% Similarity=0.281 Sum_probs=68.9
Q ss_pred ccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhc-CcccccccceeEE----Eecccccc-----HH----HH
Q 002750 186 FEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYH-HNDVKHKFACCAW----VSVSQEYR-----TE----DL 251 (885)
Q Consensus 186 r~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~-~~~~~~~f~~~~w----v~~~~~~~-----~~----~~ 251 (885)
|..+..--+++|+.+ ....|.+.|.+|.|||-||-+..= ....++.|..++- +.++++.. .+ --
T Consensus 229 rn~eQ~~ALdlLld~--dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 229 RNAEQRVALDLLLDD--DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred ccHHHHHHHHHhcCC--CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccch
Confidence 455555555666544 589999999999999988865532 1223344443332 22333211 11 11
Q ss_pred HHHHHH---HhcCCCCCccccccHHHHHHHHH---------HHhcCce---EEEEEecCCCHHHHHHHHhhCCCCCCCcE
Q 002750 252 LMRIIN---SFNIDSPSNLEKMREEDLERCLY---------QSLQGYS---YLVVIDDVWQKETWESLKRAFPDSKNGSR 316 (885)
Q Consensus 252 ~~~il~---~l~~~~~~~~~~~~~~~~~~~l~---------~~l~~~r---~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ 316 (885)
+..|.. .+.... .+....+...+. .+++++. -++|+|.+.+... .+++..+...+.|||
T Consensus 307 mq~i~DnLE~L~~~~-----~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsK 380 (436)
T COG1875 307 MQAIFDNLEVLFSPN-----EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSK 380 (436)
T ss_pred HHHHHhHHHHHhccc-----ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCE
Confidence 122222 221111 111111111111 1234443 4899999987532 234444666789999
Q ss_pred EEEEecchHH
Q 002750 317 VILTTRIREV 326 (885)
Q Consensus 317 iiiTtR~~~v 326 (885)
|+.|.-..++
T Consensus 381 IVl~gd~aQi 390 (436)
T COG1875 381 IVLTGDPAQI 390 (436)
T ss_pred EEEcCCHHHc
Confidence 9999765443
No 337
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.58 E-value=0.14 Score=60.11 Aligned_cols=153 Identities=15% Similarity=0.174 Sum_probs=81.2
Q ss_pred ccccccccHHHHHHHH---hcC-------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHH
Q 002750 182 NVVGFEDDANKLLAHL---LKE-------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDL 251 (885)
Q Consensus 182 ~~vGr~~~~~~l~~~L---~~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 251 (885)
++.|.+...+++.+.+ ... ..-.+-|.|+|++|+|||++|+.+.+. ....| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------h
Confidence 4566665555554433 211 011334889999999999999999876 22233 2222221 1
Q ss_pred HHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH------------HHHHH----HHhhCCC--CCC
Q 002750 252 LMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK------------ETWES----LKRAFPD--SKN 313 (885)
Q Consensus 252 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~------------~~~~~----l~~~l~~--~~~ 313 (885)
. .... ......+...+.......+.+|++|+++.. ..++. +...+.. ...
T Consensus 222 ~----~~~~--------g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 222 V----EMFV--------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred H----Hhhh--------cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 1 0000 011222333333334456789999998643 12222 2222222 233
Q ss_pred CcEEEEEecchHHhhcc--C-C-CCceeecCCCChhhHHHHHHHHHhc
Q 002750 314 GSRVILTTRIREVAERS--D-E-RTHAYELPFLRPDESWKLFCEKAFQ 357 (885)
Q Consensus 314 gs~iiiTtR~~~v~~~~--~-~-~~~~~~l~~L~~~e~~~lf~~~~~~ 357 (885)
+.-+|.||...+..... . + -...+.++..+.++-.+++..+...
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 45556677665543321 1 1 1356778888888888888877644
No 338
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.57 E-value=0.067 Score=51.45 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=59.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc--ccHHHHHHHHHHHhcC--CCCCccc-----c-ccH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE--YRTEDLLMRIINSFNI--DSPSNLE-----K-MRE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~--~~~~~~~-----~-~~~ 272 (885)
.-.+++|+|+.|.|||||++.+.... ....+.+++.-... ....... ..+.. ..+.-.. . .+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~ 99 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSG 99 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCH
Confidence 34689999999999999999998752 12233333321110 1111111 11111 0000000 0 111
Q ss_pred -HHHHHHHHHHhcCceEEEEEecCC---CHHHHHHHHhhCCC-CCCCcEEEEEecchHHhh
Q 002750 273 -EDLERCLYQSLQGYSYLVVIDDVW---QKETWESLKRAFPD-SKNGSRVILTTRIREVAE 328 (885)
Q Consensus 273 -~~~~~~l~~~l~~~r~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~iiiTtR~~~v~~ 328 (885)
+...-.+.+.+-.++=++++|+.. |......+...+.. ...|..||++|.+.....
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122333445555555689999975 33333333333322 123667888888776654
No 339
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.56 E-value=0.0094 Score=71.05 Aligned_cols=179 Identities=17% Similarity=0.167 Sum_probs=87.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc--------------ccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccc
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHN--------------DVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLE 268 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~--------------~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~ 268 (885)
..+++.|+|+.+.||||+.+.+.-.. ..-+.|+. ++..++...++..-+..+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~----------- 393 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSG----------- 393 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHH-----------
Confidence 46789999999999999998885320 00111221 22222222111111100000
Q ss_pred cccHHHHHHHHHHHhcCceEEEEEecCCC---HHHHHH----HHhhCCCCCCCcEEEEEecchHHhhccCCCCce--eec
Q 002750 269 KMREEDLERCLYQSLQGYSYLVVIDDVWQ---KETWES----LKRAFPDSKNGSRVILTTRIREVAERSDERTHA--YEL 339 (885)
Q Consensus 269 ~~~~~~~~~~l~~~l~~~r~LlVlDdv~~---~~~~~~----l~~~l~~~~~gs~iiiTtR~~~v~~~~~~~~~~--~~l 339 (885)
...++...+ ..+ ..+-|+++|++.. ...-.. +...+. ..|+.+|+||...++.......... ..+
T Consensus 394 --~m~~~~~Il-~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~ 467 (782)
T PRK00409 394 --HMTNIVRIL-EKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASV 467 (782)
T ss_pred --HHHHHHHHH-HhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEE
Confidence 111122222 222 4667999999853 332222 333332 2378899999998877654221111 111
Q ss_pred CCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 002750 340 PFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLSKKKPQEWRIVRDHIWR 407 (885)
Q Consensus 340 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~~ 407 (885)
. ++. +......+...+.. -...|-+|++++ |+|-.+..-|.-+.......++.++..+..
T Consensus 468 ~-~d~-~~l~~~Ykl~~G~~-----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 468 E-FDE-ETLRPTYRLLIGIP-----GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred E-Eec-CcCcEEEEEeeCCC-----CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1 111 11111001111111 134577788877 788888777776664444456666665544
No 340
>PTZ00301 uridine kinase; Provisional
Probab=95.56 E-value=0.017 Score=56.98 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..+|+|.|.+|+||||+|+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999988765
No 341
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.56 E-value=0.23 Score=58.81 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=36.6
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+.++|....+.++.+....-.....-|.|+|..|+||+++|+.+.+.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 45889998888888777543223334779999999999999999875
No 342
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.54 E-value=0.068 Score=55.28 Aligned_cols=92 Identities=20% Similarity=0.187 Sum_probs=47.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccH--HHHHHHHHHHhcCCCCCccccccH-HHHHHH
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRT--EDLLMRIINSFNIDSPSNLEKMRE-EDLERC 278 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~-~~~~~~ 278 (885)
.+.+++.++|++|+||||++..++... ...-..+.++++. .+.. .+-+....+..+.+........+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 356899999999999999998887652 2222345566543 2332 233334444444221100011122 222233
Q ss_pred HHHHhcCceEEEEEecCC
Q 002750 279 LYQSLQGYSYLVVIDDVW 296 (885)
Q Consensus 279 l~~~l~~~r~LlVlDdv~ 296 (885)
+........=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 333333334478889764
No 343
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.53 E-value=0.1 Score=57.74 Aligned_cols=86 Identities=22% Similarity=0.282 Sum_probs=44.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccH--HHHHHHHHHHhcCCCCCccccccHHHHHHHHHH
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRT--EDLLMRIINSFNIDSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 281 (885)
.+++.++|++|+||||++..++........-..+..|+... +.. .+.+....+.++.+.. ...+..++...+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~---~~~~~~~l~~~l~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVE---VVYDPKELAKALEQ 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceE---ccCCHHhHHHHHHH
Confidence 46999999999999999888765422011223466666533 221 1223333333333221 11223344444443
Q ss_pred HhcCceEEEEEecC
Q 002750 282 SLQGYSYLVVIDDV 295 (885)
Q Consensus 282 ~l~~~r~LlVlDdv 295 (885)
. .+ .=+|++|..
T Consensus 297 ~-~~-~DlVlIDt~ 308 (424)
T PRK05703 297 L-RD-CDVILIDTA 308 (424)
T ss_pred h-CC-CCEEEEeCC
Confidence 2 22 347888876
No 344
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.12 Score=59.08 Aligned_cols=132 Identities=16% Similarity=0.217 Sum_probs=78.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQS 282 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~ 282 (885)
..+.+.++|++|.|||.||+++++. ...+|- .+... .++... -......+.+.+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~--~~~~fi-----~v~~~--------~l~sk~--------vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALE--SRSRFI-----SVKGS--------ELLSKW--------VGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhh--CCCeEE-----EeeCH--------HHhccc--------cchHHHHHHHHHHHH
Confidence 4568999999999999999999985 334442 22211 111110 011233344444445
Q ss_pred hcCceEEEEEecCCCH-------------HHHHHHHhhCCC--CCCCcEEEEEecchHHhhcc--C--CCCceeecCCCC
Q 002750 283 LQGYSYLVVIDDVWQK-------------ETWESLKRAFPD--SKNGSRVILTTRIREVAERS--D--ERTHAYELPFLR 343 (885)
Q Consensus 283 l~~~r~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~gs~iiiTtR~~~v~~~~--~--~~~~~~~l~~L~ 343 (885)
.+..+..|.+|+++.. ....++...+.. ...+..||-||......... . --...+.+.+-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 5678899999998642 233444555542 23344455555544433311 1 114577888889
Q ss_pred hhhHHHHHHHHHhc
Q 002750 344 PDESWKLFCEKAFQ 357 (885)
Q Consensus 344 ~~e~~~lf~~~~~~ 357 (885)
.++..+.|..+...
T Consensus 412 ~~~r~~i~~~~~~~ 425 (494)
T COG0464 412 LEERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988753
No 345
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.52 E-value=0.021 Score=56.85 Aligned_cols=59 Identities=31% Similarity=0.340 Sum_probs=37.3
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc
Q 002750 189 DANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR 247 (885)
Q Consensus 189 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (885)
+..++++.+....++..+|+|+|+||+|||||..++....+.+++=-.++=|+-+..++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 45566777766656789999999999999999998877633333323344444444444
No 346
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.51 E-value=0.078 Score=52.39 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
...+++|+|+.|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999998875
No 347
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.48 E-value=0.032 Score=54.29 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=43.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQS 282 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~ 282 (885)
++.+|+|.|.+|+||||+|+.++.. ++.++ ++-++...-+. ..-.......... ........+.+-+.+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~-n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISLDDYYK-DQSHLPFEERNKI-NYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeecccccc-chhhcCHhhcCCc-CccChhhhcHHHHHHHHHHH
Confidence 4689999999999999999999987 44332 22222111111 0000001101111 01123455677777778777
Q ss_pred hcCce
Q 002750 283 LQGYS 287 (885)
Q Consensus 283 l~~~r 287 (885)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 77776
No 348
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.058 Score=52.19 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.+++|+|+.|.|||||++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999864
No 349
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.035 Score=64.39 Aligned_cols=154 Identities=14% Similarity=0.191 Sum_probs=85.4
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcc---ccccc-c-eeEEEeccccccHHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHND---VKHKF-A-CCAWVSVSQEYRTEDLLMRI 255 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~f-~-~~~wv~~~~~~~~~~~~~~i 255 (885)
+.++||++|+.++++.|.....+-+| ++|.+|+|||++|.-++.+.. +-... + .++-++++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g------------ 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG------------ 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH------------
Confidence 45899999999999999876443343 689999999998776665411 11111 1 11111111
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHHHh-cCceEEEEEecCCCH-----------HHHHHHHhhCCCCCCCcEEEEEecc
Q 002750 256 INSFNIDSPSNLEKMREEDLERCLYQSL-QGYSYLVVIDDVWQK-----------ETWESLKRAFPDSKNGSRVILTTRI 323 (885)
Q Consensus 256 l~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iiiTtR~ 323 (885)
.-...... .. +.++....+.+.+ +.+++.|++|.+... +.-.-++.+|..+. -++|-.|..
T Consensus 236 -~LvAGaky---RG-eFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe--L~~IGATT~ 308 (786)
T COG0542 236 -SLVAGAKY---RG-EFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE--LRCIGATTL 308 (786)
T ss_pred -HHhccccc---cC-cHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC--eEEEEeccH
Confidence 11111111 11 3344444444444 345899999997642 12222333333222 345544443
Q ss_pred hHHhhcc------CCCCceeecCCCChhhHHHHHHHHH
Q 002750 324 REVAERS------DERTHAYELPFLRPDESWKLFCEKA 355 (885)
Q Consensus 324 ~~v~~~~------~~~~~~~~l~~L~~~e~~~lf~~~~ 355 (885)
.+.-+.. .-..+.+.+...+.+++..+++...
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 3332222 1235778899999999999887544
No 350
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.45 E-value=0.0039 Score=61.45 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=70.7
Q ss_pred CCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCC-eEEeecCCCCcccceeEeecCCCcceEE--cCCcccccc
Q 002750 779 LPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSG-KKLFCTAKGFPRLEILQLLVDELEEWQV--EEGAMPRLR 855 (885)
Q Consensus 779 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~ 855 (885)
+.+|+.|++.++.++. ...+-.||+|+.|.++.|.+.. ..+.......|+|++|+++.|+++.+.. ....+++|.
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 4777888888877653 3355678999999999984332 1344445556999999999999886422 234678899
Q ss_pred ceeecccccCCC-------CccccCCCCCCCCCCC
Q 002750 856 GLRIPEHLKSRI-------PERLRSIPPPAEGECE 883 (885)
Q Consensus 856 ~L~l~~c~~~~l-------p~~l~~L~~L~~~~c~ 883 (885)
.|++.+|..+.+ ..-++.|+.|.-.++.
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 999999988333 2235666666655543
No 351
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.45 E-value=0.031 Score=60.10 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=36.5
Q ss_pred ccccccccccHHHHHHHHhcC------------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 180 EENVVGFEDDANKLLAHLLKE------------DPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+.+++|.++.++.+...+... +...+-|.++|++|+|||++|+.+...
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356788888887776665431 113467889999999999999999876
No 352
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.44 E-value=0.11 Score=50.77 Aligned_cols=102 Identities=20% Similarity=0.308 Sum_probs=64.8
Q ss_pred ccccccccccccHHHHHHHH---hcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHH
Q 002750 178 AVEENVVGFEDDANKLLAHL---LKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMR 254 (885)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~L---~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (885)
+.-..++|.|...+.+++-- .++ -...-|.++|.-|+|||+|++++.+. +....-. -|.|.+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G-~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~--------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEG-LPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE--------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcC-CcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH---------
Confidence 33456899999988887743 223 23456789999999999999999886 3333322 2232221
Q ss_pred HHHHhcCCCCCccccccHHHHHHHHHHHh--cCceEEEEEecCC---CHHHHHHHHhhCCC
Q 002750 255 IINSFNIDSPSNLEKMREEDLERCLYQSL--QGYSYLVVIDDVW---QKETWESLKRAFPD 310 (885)
Q Consensus 255 il~~l~~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~---~~~~~~~l~~~l~~ 310 (885)
+...+. .|.+.| .+.||.|..||+. ..+.+..++..+..
T Consensus 123 ----------------dl~~Lp-~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 123 ----------------DLATLP-DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred ----------------HHhhHH-HHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 111111 122233 4688999999984 34678888888764
No 353
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.43 E-value=0.03 Score=55.28 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=51.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHH
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 281 (885)
.++.++.|.|.+|+||||++..+..... ....+.++...--..-.....+... ...............+...+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKA-DPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhh-hhhhhHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999986521 3445566533211110111222222 1111111122233445566666
Q ss_pred HhcCceEEEEEecCC-CHHHHHHHHhhCCCCC
Q 002750 282 SLQGYSYLVVIDDVW-QKETWESLKRAFPDSK 312 (885)
Q Consensus 282 ~l~~~r~LlVlDdv~-~~~~~~~l~~~l~~~~ 312 (885)
..-.+++=+|+|..- +.+....+...+...+
T Consensus 88 ~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~G 119 (199)
T PF06414_consen 88 YAIENRYNIIFEGTLSNPSKLRKLIREAKAAG 119 (199)
T ss_dssp HHHHCT--EEEE--TTSSHHHHHHHHHHHCTT
T ss_pred HHHHcCCCEEEecCCCChhHHHHHHHHHHcCC
Confidence 666677788889875 3455554555555433
No 354
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.42 E-value=0.014 Score=54.09 Aligned_cols=36 Identities=33% Similarity=0.318 Sum_probs=26.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEe
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVS 241 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 241 (885)
..||.|+|.+|+||||||+++.+. ....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999987 333333455554
No 355
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.42 E-value=0.016 Score=52.69 Aligned_cols=44 Identities=34% Similarity=0.499 Sum_probs=33.0
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCC
Q 002750 206 VISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNID 262 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 262 (885)
+|.|.|++|+||||+|+.+.++.... .+ +.-.++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999999873221 12 2346788888887763
No 356
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.00073 Score=66.44 Aligned_cols=57 Identities=26% Similarity=0.318 Sum_probs=37.0
Q ss_pred CCCccEEEEeccCCCCCChhHHhcCcCCCceEeeccccCCeEEeecCCCCcccceeEee
Q 002750 779 LPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLL 837 (885)
Q Consensus 779 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~ 837 (885)
++.|+.|.|+-|+++. +..+..|++|+.|+|..|.|.+..-.....++|+|+.|.|.
T Consensus 40 Mp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred cccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 4677777777777643 45667777777777777766653333334567777777776
No 357
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.39 E-value=0.35 Score=53.05 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=32.9
Q ss_pred ccccHHHHHHHHh-----cCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 186 FEDDANKLLAHLL-----KEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 186 r~~~~~~l~~~L~-----~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
-...+.++..||. ...-+.+++.|+|++|+||||.++.+...
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHh
Confidence 3455677888887 23345679999999999999999988865
No 358
>PRK04328 hypothetical protein; Provisional
Probab=95.39 E-value=0.042 Score=56.31 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc
Q 002750 193 LLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE 245 (885)
Q Consensus 193 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 245 (885)
+-+.|..+=+...++.|.|++|+|||++|.++.... ...-..++|++..+.
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee~ 62 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEEH 62 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeCC
Confidence 333343333456899999999999999999876542 222345788887663
No 359
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.38 E-value=0.011 Score=53.67 Aligned_cols=21 Identities=48% Similarity=0.703 Sum_probs=19.6
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 002750 207 ISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 207 v~I~G~~GiGKTtLa~~v~~~ 227 (885)
|+|.|++|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 360
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.37 E-value=0.065 Score=53.00 Aligned_cols=92 Identities=18% Similarity=0.330 Sum_probs=51.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEe---------ccccccHHHH--HHHHHHHhcCCCCCccc-c
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVS---------VSQEYRTEDL--LMRIINSFNIDSPSNLE-K 269 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---------~~~~~~~~~~--~~~il~~l~~~~~~~~~-~ 269 (885)
.+..+|.++||+|+||||..++++.. ....+....-|+ ..-..++++. .+..+++.+.......- .
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH--LHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH--HhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 35678889999999999999999876 223332222222 2233455554 35677777664442211 1
Q ss_pred -----ccHHHHHHHHHHHhcCceEEEEEecCC
Q 002750 270 -----MREEDLERCLYQSLQGYSYLVVIDDVW 296 (885)
Q Consensus 270 -----~~~~~~~~~l~~~l~~~r~LlVlDdv~ 296 (885)
...++.+..+.+.-..-.| +++|--.
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~-~liDTPG 125 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDY-VLIDTPG 125 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCE-EEEcCCC
Confidence 1334555555554433334 4556543
No 361
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.37 E-value=0.085 Score=57.08 Aligned_cols=25 Identities=40% Similarity=0.465 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+..++.++|++|+||||++.+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999864
No 362
>PRK05439 pantothenate kinase; Provisional
Probab=95.33 E-value=0.071 Score=55.72 Aligned_cols=82 Identities=20% Similarity=0.120 Sum_probs=44.5
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcCcccccc--cceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHH
Q 002750 201 DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHK--FACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERC 278 (885)
Q Consensus 201 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 278 (885)
....-+|+|.|.+|+||||+|+.+... .... -..+.-++...-+.....+.. ..+.... ...+..+.+.+.+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~k-g~Pes~D~~~l~~~ 157 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRK-GFPESYDMRALLRF 157 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhh--hhccccC-CCcccccHHHHHHH
Confidence 346789999999999999999988764 2211 123444444433322222211 0111011 11234566667666
Q ss_pred HHHHhcCce
Q 002750 279 LYQSLQGYS 287 (885)
Q Consensus 279 l~~~l~~~r 287 (885)
|.....++.
T Consensus 158 L~~Lk~G~~ 166 (311)
T PRK05439 158 LSDVKSGKP 166 (311)
T ss_pred HHHHHcCCC
Confidence 666666554
No 363
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.32 E-value=0.035 Score=54.75 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=58.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCC--Cccccc--cHHHHHHHH
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSP--SNLEKM--REEDLERCL 279 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~--~~~~~~~~l 279 (885)
.+++.|.|+.|.||||+.+.+.... +-.+. -.+|.+.. .. -.+...++..++.... ...... ...++. .+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~-~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETA-YI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHH-HH
Confidence 4799999999999999998886431 00000 11111111 00 0222333333332211 000000 111111 11
Q ss_pred HHHhcCceEEEEEecCC---CHHH----HHHHHhhCCCCCCCcEEEEEecchHHhhcc
Q 002750 280 YQSLQGYSYLVVIDDVW---QKET----WESLKRAFPDSKNGSRVILTTRIREVAERS 330 (885)
Q Consensus 280 ~~~l~~~r~LlVlDdv~---~~~~----~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~ 330 (885)
.. +..++-|+++|+.. +..+ ...+...+.. .|..+|++|...+++...
T Consensus 103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAIL 157 (204)
T ss_pred HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHh
Confidence 11 23556799999973 3322 2223333332 278899999999888765
No 364
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.22 Score=50.04 Aligned_cols=93 Identities=23% Similarity=0.368 Sum_probs=57.7
Q ss_pred cccccccccHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE----------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTED 250 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 250 (885)
+++.|.|..++.+.+...-. ....+-|.++|++|.||+.||++|+.... . -|.++|.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH----H
Confidence 35678888888887765321 22468899999999999999999997632 2 23444432 1
Q ss_pred HHHHHHHHhcCCCCCccccccHHHHHHHHHHHh-cCceEEEEEecCCC
Q 002750 251 LLMRIINSFNIDSPSNLEKMREEDLERCLYQSL-QGYSYLVVIDDVWQ 297 (885)
Q Consensus 251 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~ 297 (885)
+. ..-.. ..+.+...|.+.- .+++-.|.+|.++.
T Consensus 202 Lv----SKWmG---------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 202 LV----SKWMG---------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HH----HHHhc---------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11 11111 1233444444443 46788999999873
No 365
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.28 E-value=0.11 Score=52.50 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYH 226 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~ 226 (885)
.-.+++|+|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999987
No 366
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.27 E-value=0.062 Score=58.79 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=50.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCC-------C-CccccccHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDS-------P-SNLEKMREED 274 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-------~-~~~~~~~~~~ 274 (885)
+-..++|+|+.|+|||||++.+..... ....++|+.-.+.-+..++....+....... . ..........
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 456899999999999999998886522 2234555543233344444443333321110 0 0000111112
Q ss_pred HHHHHHHHh--cCceEEEEEecCCC
Q 002750 275 LERCLYQSL--QGYSYLVVIDDVWQ 297 (885)
Q Consensus 275 ~~~~l~~~l--~~~r~LlVlDdv~~ 297 (885)
..-.+.+++ +++.+|+++||+..
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHH
Confidence 223344444 58999999999854
No 367
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.27 E-value=0.14 Score=52.13 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=60.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccc--ccccceeEEEecccccc-HHHHHHHHHHHhcCCCC----Cccc-----cc
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDV--KHKFACCAWVSVSQEYR-TEDLLMRIINSFNIDSP----SNLE-----KM 270 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~----~~~~-----~~ 270 (885)
+-+-++|.|.+|+|||+|+..+.++... +++-+.++++-+++... ..++...+...-..... ...+ ..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3456899999999999999998876321 22346788888887654 44555555443221111 0000 11
Q ss_pred cHHHHHHHHHHHh--c-CceEEEEEecCCCH-HHHHHHH
Q 002750 271 REEDLERCLYQSL--Q-GYSYLVVIDDVWQK-ETWESLK 305 (885)
Q Consensus 271 ~~~~~~~~l~~~l--~-~~r~LlVlDdv~~~-~~~~~l~ 305 (885)
...-..-.+.+++ + ++++|+++||+... ....++.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEis 186 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREIS 186 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHH
Confidence 1112233345555 3 78999999999543 4455554
No 368
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.26 E-value=0.012 Score=46.42 Aligned_cols=22 Identities=45% Similarity=0.687 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+|.|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 369
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.26 E-value=0.19 Score=52.44 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=37.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHh
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSF 259 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 259 (885)
...++.|.|++|+||||++..++.... ..+-..++|++... +..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 456899999999999999998876521 12124688888765 3455565555543
No 370
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.23 E-value=0.075 Score=52.53 Aligned_cols=100 Identities=16% Similarity=0.265 Sum_probs=55.2
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccc-cHHHHHHHHHHHhcCCCC---Cccc
Q 002750 193 LLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEY-RTEDLLMRIINSFNIDSP---SNLE 268 (885)
Q Consensus 193 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~---~~~~ 268 (885)
.++.|..-. +-.-++|.|.+|+|||+|+..+.+.. .-+.++++-+++.. ...++.+.+...-..+.. ....
T Consensus 5 ~ID~l~Pig-~Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIG-RGQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEE-TTSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccc-cCCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 445553322 33578899999999999999998763 22345777777654 344455555332111110 0000
Q ss_pred ccc-H-----HHHHHHHHHHh--cCceEEEEEecCCC
Q 002750 269 KMR-E-----EDLERCLYQSL--QGYSYLVVIDDVWQ 297 (885)
Q Consensus 269 ~~~-~-----~~~~~~l~~~l--~~~r~LlVlDdv~~ 297 (885)
... . ....-.+.+++ +++.+|+++||+..
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHH
Confidence 000 0 11111223333 68999999999843
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.23 E-value=0.26 Score=48.38 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=18.8
Q ss_pred EEEEEecCCchHHHHHHHHh
Q 002750 206 VISIFGMGGLGKTTLARKLY 225 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~ 225 (885)
+++|+|+.|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999876
No 372
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.23 E-value=0.018 Score=63.24 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=37.8
Q ss_pred ccccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 180 EENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
...++||++.++.+...+..+. -|.|.|++|+|||++|+.+...
T Consensus 19 ~~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 3568999999999999886553 5789999999999999999875
No 373
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.22 E-value=0.06 Score=63.03 Aligned_cols=98 Identities=23% Similarity=0.233 Sum_probs=60.6
Q ss_pred HHHHHHh-cCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCC--ccc
Q 002750 192 KLLAHLL-KEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPS--NLE 268 (885)
Q Consensus 192 ~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~ 268 (885)
.+-..|- .+=+..+++-|.|++|+||||||..++.. ....-..++|++..+.++.. .+++++.+... -..
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~ 119 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQ 119 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEec
Confidence 3344443 33346789999999999999999887654 22223457999988777643 55666653220 011
Q ss_pred cccHHHHHHHHHHHhc-CceEEEEEecCC
Q 002750 269 KMREEDLERCLYQSLQ-GYSYLVVIDDVW 296 (885)
Q Consensus 269 ~~~~~~~~~~l~~~l~-~~r~LlVlDdv~ 296 (885)
....++....+...++ ++--|||+|.+.
T Consensus 120 ~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 120 PDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 1233455555555554 345589999874
No 374
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.21 E-value=0.074 Score=55.67 Aligned_cols=89 Identities=25% Similarity=0.324 Sum_probs=52.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCc--cccccHHHHHHHH
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSN--LEKMREEDLERCL 279 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~~~l 279 (885)
+..+++-|+|+.|+||||||..+... .+..-..++|++....++.. .+.+++.+...- ......++.....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 45689999999999999999998876 33344568999988776654 234444322200 0112344555555
Q ss_pred HHHhcC-ceEEEEEecCCC
Q 002750 280 YQSLQG-YSYLVVIDDVWQ 297 (885)
Q Consensus 280 ~~~l~~-~r~LlVlDdv~~ 297 (885)
...++. .--++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 555543 334889998754
No 375
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.18 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
...+++|+|+.|+|||||++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 376
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.21 E-value=0.15 Score=50.68 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.+++|+|+.|.|||||++.+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999764
No 377
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.18 E-value=0.13 Score=47.92 Aligned_cols=22 Identities=45% Similarity=0.676 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 378
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.16 E-value=0.024 Score=59.26 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=42.4
Q ss_pred cccccccccccHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 179 VEENVVGFEDDANKLLAHLLKE----DPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
....|+|.++.++++++.+... +.+-+|+.++||.|.||||||..+-+-
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999998643 457799999999999999999988765
No 379
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.16 E-value=0.026 Score=56.95 Aligned_cols=63 Identities=27% Similarity=0.295 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHH
Q 002750 190 ANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLL 252 (885)
Q Consensus 190 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 252 (885)
-.+++..+....++..+|+|+|.||+|||||...+.....-.++=-.++=|+-|..++--.++
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 356667676666788999999999999999999888765444544456666666666544444
No 380
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.5 Score=54.00 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=62.3
Q ss_pred cccccccccHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE----------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTED 250 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 250 (885)
+++-|.++.+.+|.+-+.-. -.+..=|.++|++|.|||-+|++|+.. .. ..|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH-----
Confidence 45678888888888866431 122446779999999999999999976 22 235555432
Q ss_pred HHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCC
Q 002750 251 LLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQ 297 (885)
Q Consensus 251 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~ 297 (885)
.++...- +.+++.+.+...+.-..++++|.||+++.
T Consensus 740 ---ELLNMYV--------GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMYV--------GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHHh--------cchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1222111 12345556666666678899999999875
No 381
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.16 E-value=0.062 Score=53.75 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+|+|.|++|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 382
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.14 E-value=0.21 Score=50.34 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.+++|.|+.|+|||||++.+...
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999875
No 383
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.14 E-value=0.096 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.+++|+|+.|.|||||++.+..-
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999875
No 384
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.14 E-value=0.035 Score=55.26 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 002750 204 RSVISIFGMGGLGKTTLARKLYH 226 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~ 226 (885)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999998873
No 385
>PRK08233 hypothetical protein; Provisional
Probab=95.13 E-value=0.016 Score=56.30 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=22.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..+|+|.|++|+||||+|..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999876
No 386
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.12 E-value=0.35 Score=51.65 Aligned_cols=101 Identities=23% Similarity=0.305 Sum_probs=52.0
Q ss_pred CcEEEEEEecCCchHHH-HHHHHhcCcccccccceeEEEeccccccH--HHHHHHHHHHhcCCCCCccccccHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTT-LARKLYHHNDVKHKFACCAWVSVSQEYRT--EDLLMRIINSFNIDSPSNLEKMREEDLERCL 279 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l 279 (885)
+.++|.++||.|+|||| ||+..+.-. ....=..+..++.. .|.+ .+-++.-.+-++.+-. ...+..++...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtD-tYRIGA~EQLk~Ya~im~vp~~---vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTD-TYRIGAVEQLKTYADIMGVPLE---VVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEec-cchhhHHHHHHHHHHHhCCceE---EecCHHHHHHHH
Confidence 37999999999999995 555444331 11222346666643 2333 3334444444554433 122334444333
Q ss_pred HHHhcCceEEEEEecCC----CHHHHHHHHhhCCC
Q 002750 280 YQSLQGYSYLVVIDDVW----QKETWESLKRAFPD 310 (885)
Q Consensus 280 ~~~l~~~r~LlVlDdv~----~~~~~~~l~~~l~~ 310 (885)
.. ++++. +|.+|-+. |....+++...+..
T Consensus 277 ~~-l~~~d-~ILVDTaGrs~~D~~~i~el~~~~~~ 309 (407)
T COG1419 277 EA-LRDCD-VILVDTAGRSQYDKEKIEELKELIDV 309 (407)
T ss_pred HH-hhcCC-EEEEeCCCCCccCHHHHHHHHHHHhc
Confidence 32 23333 66678764 33455555555543
No 387
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.072 Score=50.30 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=61.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc--HHHHHHHHHHHhcCCCCCccccccH-HHHHHHHH
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR--TEDLLMRIINSFNIDSPSNLEKMRE-EDLERCLY 280 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~-~~~~~~l~ 280 (885)
-.+++|+|+.|.|||||++.+.... ......+++....... ... ....+..-.. .+. +...-.+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~q-----lS~G~~~r~~l~ 92 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEE----LRRRIGYVPQ-----LSGGQRQRVALA 92 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHH----HHhceEEEee-----CCHHHHHHHHHH
Confidence 3699999999999999999998752 2234555554322111 111 1111111000 111 22233355
Q ss_pred HHhcCceEEEEEecCC---CHHHHHHHHhhCCCC-CCCcEEEEEecchHHhhc
Q 002750 281 QSLQGYSYLVVIDDVW---QKETWESLKRAFPDS-KNGSRVILTTRIREVAER 329 (885)
Q Consensus 281 ~~l~~~r~LlVlDdv~---~~~~~~~l~~~l~~~-~~gs~iiiTtR~~~v~~~ 329 (885)
..+...+=++++|+.. |......+...+... ..+..++++|.+......
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5555556689999975 333344443333321 124668888887666544
No 388
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.07 E-value=0.079 Score=57.69 Aligned_cols=99 Identities=12% Similarity=0.223 Sum_probs=57.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc-HHHHHHHHHHHhcCCCC----Ccccc-----ccH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR-TEDLLMRIINSFNIDSP----SNLEK-----MRE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~----~~~~~-----~~~ 272 (885)
+...++|+|..|+|||||++.+.+.. ..+.++.+-+++... ..++...++..-..... ...+. ...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34679999999999999999998652 124555666666544 34455555444222111 00011 111
Q ss_pred HHHHHHHHHHh--cCceEEEEEecCCCH-HHHHHHH
Q 002750 273 EDLERCLYQSL--QGYSYLVVIDDVWQK-ETWESLK 305 (885)
Q Consensus 273 ~~~~~~l~~~l--~~~r~LlVlDdv~~~-~~~~~l~ 305 (885)
....-.+.+++ +++++|+++||+... ..+.++.
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REIs 272 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIA 272 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHHH
Confidence 12223344454 689999999999543 3444443
No 389
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.06 E-value=0.27 Score=49.50 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
-.+++|+|+.|.|||||++.+...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999864
No 390
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.05 E-value=0.58 Score=48.39 Aligned_cols=134 Identities=12% Similarity=0.118 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCC-----CC
Q 002750 191 NKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDS-----PS 265 (885)
Q Consensus 191 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~ 265 (885)
+++...+..+. -.....++|+.|+||+++|..+........ .... ...+ .....+. +.
T Consensus 7 ~~L~~~i~~~r-l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~------------~~~~---c~~~-~~~~HPD~~~i~p~ 69 (290)
T PRK05917 7 EALIQRVRDQK-VPSAIILHGQDLSNLSARAYELASLILKET------------SPEA---AYKI-SQKIHPDIHEFSPQ 69 (290)
T ss_pred HHHHHHHHcCC-cCeeEeeECCCCCcHHHHHHHHHHHHhCCC------------CccH---HHHH-hcCCCCCEEEEecC
Confidence 45555554432 345777999999999999998876421110 0000 0011 1111000 00
Q ss_pred cc-ccccHHHHHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHHhhCCCCCCCcEEEEEecc-hHHhhccCCCCce
Q 002750 266 NL-EKMREEDLERCLYQSL-----QGYSYLVVIDDVWQ--KETWESLKRAFPDSKNGSRVILTTRI-REVAERSDERTHA 336 (885)
Q Consensus 266 ~~-~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtR~-~~v~~~~~~~~~~ 336 (885)
.. ..+..+++.+ +.+.+ .+++=++|+|+++. .+.+..+...+..-..++.+|++|.+ ..+.....+....
T Consensus 70 ~~~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~ 148 (290)
T PRK05917 70 GKGRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLS 148 (290)
T ss_pred CCCCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceE
Confidence 00 1123444332 33332 24555889999974 57888999888876667777666665 4443333344566
Q ss_pred eecCCC
Q 002750 337 YELPFL 342 (885)
Q Consensus 337 ~~l~~L 342 (885)
+.+.++
T Consensus 149 ~~~~~~ 154 (290)
T PRK05917 149 IHIPME 154 (290)
T ss_pred EEccch
Confidence 677665
No 391
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.04 E-value=0.012 Score=51.77 Aligned_cols=28 Identities=36% Similarity=0.523 Sum_probs=19.5
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccccce
Q 002750 207 ISIFGMGGLGKTTLARKLYHHNDVKHKFAC 236 (885)
Q Consensus 207 v~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 236 (885)
|.|+|.+|+||||+|+.+... ....|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCceeE
Confidence 679999999999999999987 6666754
No 392
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.04 E-value=0.23 Score=53.00 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=56.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc-ccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE-YRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQ 281 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 281 (885)
+.+++.|+|+.|+||||++..+.... ...-..+.++++... .....-++...+.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~---~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI---VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE---ecCCHHHHHHHHHH
Confidence 46899999999999999999887652 222234666665432 1223445555555543221 12244555554443
Q ss_pred Hhc-CceEEEEEecCCC----HHHHHHHHhh
Q 002750 282 SLQ-GYSYLVVIDDVWQ----KETWESLKRA 307 (885)
Q Consensus 282 ~l~-~~r~LlVlDdv~~----~~~~~~l~~~ 307 (885)
.-. +..=+|++|-... .+..+.+...
T Consensus 280 l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l 310 (407)
T PRK12726 280 MTYVNCVDHILIDTVGRNYLAEESVSEISAY 310 (407)
T ss_pred HHhcCCCCEEEEECCCCCccCHHHHHHHHHH
Confidence 321 3335888998743 3344444443
No 393
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.03 E-value=0.018 Score=57.41 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+..+|+|.|++|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999876
No 394
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.03 E-value=0.032 Score=51.47 Aligned_cols=86 Identities=28% Similarity=0.268 Sum_probs=47.0
Q ss_pred EEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCc
Q 002750 207 ISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGY 286 (885)
Q Consensus 207 v~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 286 (885)
|.|+|++|+|||+||+.+++.. .. ...-+.++...+..+++...--. ..... -.+. .+.. .+ .+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~~-~~~~----~l~~----a~-~~ 65 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--GR---PVIRINCSSDTTEEDLIGSYDPS-NGQFE-FKDG----PLVR----AM-RK 65 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--TC---EEEEEE-TTTSTHHHHHCEEET--TTTTC-EEE-----CCCT----TH-HE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--hc---ceEEEEeccccccccceeeeeec-ccccc-cccc----cccc----cc-cc
Confidence 6799999999999999998762 11 23345677767766655322111 00000 0000 0000 00 17
Q ss_pred eEEEEEecCC--CHHHHHHHHhhC
Q 002750 287 SYLVVIDDVW--QKETWESLKRAF 308 (885)
Q Consensus 287 r~LlVlDdv~--~~~~~~~l~~~l 308 (885)
..++|||+++ +.+.+..+...+
T Consensus 66 ~~il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 66 GGILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEEEEESSCGG--HHHHHTTHHHH
T ss_pred eeEEEECCcccCCHHHHHHHHHHH
Confidence 7899999997 344555554444
No 395
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.02 E-value=0.038 Score=56.89 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=18.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 002750 205 SVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+.|.|+|.||+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 57899999999999999999875
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.22 Score=54.52 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
...+++++|+.|+||||++..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999877653
No 397
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.00 E-value=0.029 Score=56.28 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=19.6
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 002750 207 ISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 207 v~I~G~~GiGKTtLa~~v~~~ 227 (885)
|.|.|++|+||||+|+.+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999875
No 398
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.035 Score=49.62 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=40.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
.+-|.|.|-+|+||||++..+.... ..-|+++++-.....+.. ...... ...-.+.+.+.+.|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-------~~~~i~isd~vkEn~l~~----gyDE~y--~c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-------GLEYIEISDLVKENNLYE----GYDEEY--KCHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-------CCceEehhhHHhhhcchh----cccccc--cCccccHHHHHHHHHHHH
Confidence 4568899999999999999999642 134777765332222221 111111 112345666777777776
Q ss_pred cC
Q 002750 284 QG 285 (885)
Q Consensus 284 ~~ 285 (885)
..
T Consensus 74 ~~ 75 (176)
T KOG3347|consen 74 IE 75 (176)
T ss_pred hc
Confidence 44
No 399
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.99 E-value=0.029 Score=50.45 Aligned_cols=39 Identities=28% Similarity=0.222 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCc
Q 002750 190 ANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHN 228 (885)
Q Consensus 190 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 228 (885)
.+++.+.|...-....+|.+.|.-|+||||+++.+++..
T Consensus 8 t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 8 MDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 334444443322334699999999999999999999863
No 400
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.28 Score=47.75 Aligned_cols=26 Identities=38% Similarity=0.531 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCc
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHN 228 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 228 (885)
.-.+-+|-||.|+||||||..+.-++
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 401
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.98 E-value=0.019 Score=57.17 Aligned_cols=26 Identities=50% Similarity=0.781 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+...+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999865
No 402
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.96 E-value=0.022 Score=54.37 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=29.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccc-cccceeEEEecccc
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVK-HKFACCAWVSVSQE 245 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 245 (885)
..++.+.|+.|+|||.+|+.+.+. .. +.....+-++++.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcc
Confidence 568899999999999999999876 33 34445555666543
No 403
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.94 E-value=0.032 Score=52.86 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 002750 205 SVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+.|.+.|.+|+||||+|+++.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46889999999999999999875
No 404
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.93 E-value=0.19 Score=50.49 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.+++|+|+.|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999864
No 405
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.92 E-value=0.14 Score=52.32 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+..|+|++|+|||+||..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999988753
No 406
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.92 E-value=0.066 Score=59.08 Aligned_cols=94 Identities=21% Similarity=0.308 Sum_probs=57.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc-HHHHHHHHHHHhcCCCC----Cc-----cccccH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR-TEDLLMRIINSFNIDSP----SN-----LEKMRE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~----~~-----~~~~~~ 272 (885)
+-.-++|.|.+|+|||||+.++.+... +.+-+.++++-+++... ..++...+...-..... .. ......
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 446789999999999999998887632 22456777887776544 44555555543221111 00 011112
Q ss_pred HHHHHHHHHHh---cCceEEEEEecCCC
Q 002750 273 EDLERCLYQSL---QGYSYLVVIDDVWQ 297 (885)
Q Consensus 273 ~~~~~~l~~~l---~~~r~LlVlDdv~~ 297 (885)
....-.+.+++ +++++|+++|++..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 22344455665 37999999999954
No 407
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.14 Score=60.57 Aligned_cols=115 Identities=18% Similarity=0.286 Sum_probs=70.5
Q ss_pred cccccccccHHHHHHHHhcC-----CC-CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHH
Q 002750 181 ENVVGFEDDANKLLAHLLKE-----DP-RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMR 254 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-----~~-~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 254 (885)
..++|-++.+..|.+.+... ++ ..-...+.|+.|+|||-||+++..- +.+..+..+-++.++ ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh-
Confidence 45788888888888888653 11 4567888999999999999999875 444444444444443 222
Q ss_pred HHHHhcCCCCCccccccHHHHHHHHHHHhcCceE-EEEEecCCC--HHHHHHHHhhCC
Q 002750 255 IINSFNIDSPSNLEKMREEDLERCLYQSLQGYSY-LVVIDDVWQ--KETWESLKRAFP 309 (885)
Q Consensus 255 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVlDdv~~--~~~~~~l~~~l~ 309 (885)
...+....+ .....+....|.+.++.++| +|.||||+. ......+...+.
T Consensus 633 -vskligsp~----gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 -VSKLIGSPP----GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred -hhhccCCCc----ccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 222322211 11112223467777877776 777899974 445555555554
No 408
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.90 E-value=0.17 Score=63.78 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..+=|.++|++|.|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 3567889999999999999999987
No 409
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.85 E-value=0.3 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.+++|+|+.|.|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999764
No 410
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.79 E-value=0.19 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.+++|+|+.|+|||||++.+...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3469999999999999999999764
No 411
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.79 E-value=0.092 Score=54.12 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=30.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccc
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQ 244 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 244 (885)
+...++.|.|++|+|||++|.+++... ...-..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecC
Confidence 456899999999999999999986542 12223577888764
No 412
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.78 E-value=0.22 Score=58.24 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.+|+.++|+.|+||||.+.++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 579999999999999999988865
No 413
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.78 E-value=0.35 Score=48.37 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
...+++|+|+.|.|||||++.+...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 414
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.77 E-value=0.21 Score=55.00 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=58.8
Q ss_pred CcEEEEEEecCCchHHHHH-HHHhcCccc-----ccccceeEEEeccccccHHHHHHHHHHHhc-CCCC----Ccccccc
Q 002750 203 RRSVISIFGMGGLGKTTLA-RKLYHHNDV-----KHKFACCAWVSVSQEYRTEDLLMRIINSFN-IDSP----SNLEKMR 271 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~-~~~~----~~~~~~~ 271 (885)
+-.-++|.|..|+|||+|| ..+.++..+ ..+-+.++++-+++..+.-.-+.+.+++-+ .... ...+...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4467889999999999997 566665322 123456788888887654444555555544 1111 0000001
Q ss_pred HH-----HHHHHHHHHh--cCceEEEEEecCCCH-HHHHHHH
Q 002750 272 EE-----DLERCLYQSL--QGYSYLVVIDDVWQK-ETWESLK 305 (885)
Q Consensus 272 ~~-----~~~~~l~~~l--~~~r~LlVlDdv~~~-~~~~~l~ 305 (885)
.. -..-.+.+++ +++.+|+|+||+..- ..+.++.
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REIS 309 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQIS 309 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHH
Confidence 11 1122233343 588999999999643 4455543
No 415
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.76 E-value=0.015 Score=50.71 Aligned_cols=21 Identities=48% Similarity=0.773 Sum_probs=19.1
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 002750 207 ISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 207 v~I~G~~GiGKTtLa~~v~~~ 227 (885)
|.|+|++|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998876
No 416
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.76 E-value=0.51 Score=53.74 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=37.9
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+.++|....++++.+.+..-.....-|.|.|..|+||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 35899999998888887543333457889999999999999999865
No 417
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.75 E-value=0.11 Score=53.86 Aligned_cols=79 Identities=20% Similarity=0.138 Sum_probs=42.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCccccccc--ceeEEEeccccccHHHHHHHHHHHhcC-CCCCccccccHHHHHHH
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKF--ACCAWVSVSQEYRTEDLLMRIINSFNI-DSPSNLEKMREEDLERC 278 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~~~~ 278 (885)
....+|+|.|+.|+||||+|+.+..- ..... ..+..++...-+........ .+. ......+..+.+.+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~----~g~~~~~g~P~s~D~~~l~~~ 133 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKE----RNLMKKKGFPESYDMHRLVKF 133 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHH----cCCccccCCChhccHHHHHHH
Confidence 45789999999999999999876543 11111 12444444333222222221 221 11112345666777776
Q ss_pred HHHHhcCc
Q 002750 279 LYQSLQGY 286 (885)
Q Consensus 279 l~~~l~~~ 286 (885)
+...-.++
T Consensus 134 L~~Lk~g~ 141 (290)
T TIGR00554 134 LSDLKSGK 141 (290)
T ss_pred HHHHHCCC
Confidence 66665554
No 418
>PRK08149 ATP synthase SpaL; Validated
Probab=94.75 E-value=0.12 Score=56.59 Aligned_cols=91 Identities=16% Similarity=0.239 Sum_probs=52.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc-ccHHHHHHHHHHHhcCCCC---------CccccccH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE-YRTEDLLMRIINSFNIDSP---------SNLEKMRE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~---------~~~~~~~~ 272 (885)
+-..++|+|..|+|||||+..++.... -+.++...+... -+..++..+.+........ ........
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 456899999999999999999987521 123333334332 3445555555554322111 00011111
Q ss_pred HHHHHHHHHHh--cCceEEEEEecCCC
Q 002750 273 EDLERCLYQSL--QGYSYLVVIDDVWQ 297 (885)
Q Consensus 273 ~~~~~~l~~~l--~~~r~LlVlDdv~~ 297 (885)
....-.+.+++ +++++|+++||+-.
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 22333344444 58999999999854
No 419
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.74 E-value=0.2 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
...+++|+|+.|.|||||++.++..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999864
No 420
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.72 E-value=0.11 Score=56.80 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=56.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccH-HHHHHHHHHHhcCCCC----Cccc-----cccH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRT-EDLLMRIINSFNIDSP----SNLE-----KMRE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~il~~l~~~~~----~~~~-----~~~~ 272 (885)
+...++|+|..|+|||||++.+++... .+.++++-+++.... .++....+..-+.... ...+ ....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456899999999999999999987622 234555666655443 3444444443222111 0000 0111
Q ss_pred HHHHHHHHHHh--cCceEEEEEecCCCH-HHHHHHH
Q 002750 273 EDLERCLYQSL--QGYSYLVVIDDVWQK-ETWESLK 305 (885)
Q Consensus 273 ~~~~~~l~~~l--~~~r~LlVlDdv~~~-~~~~~l~ 305 (885)
....-.+.+++ +++.+|+++||+... ....++.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~REis 268 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIG 268 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHHHhhhhHHH
Confidence 22233344454 689999999999543 3444443
No 421
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.28 Score=55.54 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=91.5
Q ss_pred ccccccccccccHHHHHH---HHhcCC-------CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc
Q 002750 178 AVEENVVGFEDDANKLLA---HLLKED-------PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR 247 (885)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~---~L~~~~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 247 (885)
+.-.+..|.|+.++++.+ .|..+. .=++=|.++|++|.|||.||+++.....+- | .+.|...
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~- 218 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSD- 218 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchh-
Confidence 344567888877765555 444332 124668899999999999999999874332 2 2222110
Q ss_pred HHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH------------HHHHHHHhh----CCCC
Q 002750 248 TEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK------------ETWESLKRA----FPDS 311 (885)
Q Consensus 248 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~------------~~~~~l~~~----l~~~ 311 (885)
.++.+ -........+...+..++-++.+++|.++.. +.+++.... ....
T Consensus 219 -------FVemf--------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 219 -------FVEMF--------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred -------hhhhh--------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 01111 1112234445555666677889999987642 344443333 2222
Q ss_pred C--CCcEEEEEecchHHhhcc---CC-CCceeecCCCChhhHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCchH
Q 002750 312 K--NGSRVILTTRIREVAERS---DE-RTHAYELPFLRPDESWKLFCEKAFQSFNA-DEGLEKLGREMLEKCGGLPL 381 (885)
Q Consensus 312 ~--~gs~iiiTtR~~~v~~~~---~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Pl 381 (885)
+ .|..|+-.|...+|.... .+ -...+.++.-+-..-.++++-++....-. .-.+ ..|++.+-|.--
T Consensus 284 ~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfsG 356 (596)
T COG0465 284 GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFSG 356 (596)
T ss_pred CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCccc
Confidence 2 344444444444444322 11 23444555555455666666555333322 1112 226666665543
No 422
>PRK06547 hypothetical protein; Provisional
Probab=94.71 E-value=0.026 Score=53.85 Aligned_cols=26 Identities=38% Similarity=0.330 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
....+|.|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999875
No 423
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.71 E-value=0.099 Score=49.71 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=32.9
Q ss_pred cccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 183 VVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+||.+..+.++++.+..-.....-|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467788888888877553223345669999999999999999985
No 424
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=1 Score=51.16 Aligned_cols=174 Identities=13% Similarity=0.165 Sum_probs=92.3
Q ss_pred ccccccccHHHHHHHHhcCC-----------CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHH
Q 002750 182 NVVGFEDDANKLLAHLLKED-----------PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTED 250 (885)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~-----------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 250 (885)
++-|..+.++.+.+.+.-+. ....-|.++|++|.|||-||.++..... .-++++-.+
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP----- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP----- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH-----
Confidence 45566666665555554321 1234588999999999999999987621 224555432
Q ss_pred HHHHHHHHhcCCCCCccccccHHHHHHHHHHHhcCceEEEEEecCCCH-------------HHHHHHHhhCCC--CCCCc
Q 002750 251 LLMRIINSFNIDSPSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQK-------------ETWESLKRAFPD--SKNGS 315 (885)
Q Consensus 251 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~gs 315 (885)
.++...-+ .+++.+.....+.-..+++.+.||+++.. ....++...+.. +-.|.
T Consensus 736 ---ElL~KyIG--------aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 736 ---ELLSKYIG--------ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred ---HHHHHHhc--------ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 12222211 13344455555566789999999998752 345556555553 22566
Q ss_pred EEEEEecchHHhhc-c--CCCC-ceeecCCCChhhHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCchH
Q 002750 316 RVILTTRIREVAER-S--DERT-HAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPL 381 (885)
Q Consensus 316 ~iiiTtR~~~v~~~-~--~~~~-~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 381 (885)
-|+-.|...+..+. . .+.. ..+.-+.-++.+-.+++....-....+. ..-.+.++.+.+|.--
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTG 871 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCch
Confidence 66644433333221 1 1222 2223333455667777766553221111 1123455666666543
No 425
>PRK05922 type III secretion system ATPase; Validated
Probab=94.68 E-value=0.15 Score=55.77 Aligned_cols=99 Identities=13% Similarity=0.188 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc-ccHHHHHHHHHHHhcCCCC----Ccc-----ccccH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE-YRTEDLLMRIINSFNIDSP----SNL-----EKMRE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~----~~~-----~~~~~ 272 (885)
+...++|+|..|+|||||.+.+.... ..+..+.+-+++. ....+.+.+.......... ... .....
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 34568999999999999999998762 1233333333332 2334444444433322211 000 11111
Q ss_pred HHHHHHHHHHh--cCceEEEEEecCCCH-HHHHHHH
Q 002750 273 EDLERCLYQSL--QGYSYLVVIDDVWQK-ETWESLK 305 (885)
Q Consensus 273 ~~~~~~l~~~l--~~~r~LlVlDdv~~~-~~~~~l~ 305 (885)
....-.+.+++ +++++|+++||+... ....++.
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REis 267 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVA 267 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHH
Confidence 22333345555 589999999999543 3444443
No 426
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.68 E-value=0.1 Score=49.23 Aligned_cols=117 Identities=17% Similarity=0.107 Sum_probs=62.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeE---EEeccccccHHHHHHHHHHHhcC---CCC-----Cccc--cc
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCA---WVSVSQEYRTEDLLMRIINSFNI---DSP-----SNLE--KM 270 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~il~~l~~---~~~-----~~~~--~~ 270 (885)
...|-|++..|.||||.|....-+. .++=-.+. |+.-.........+..+ .+.. ... ...+ ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra--~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA--LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH--HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 4678889999999999998776542 22211222 33333223334444432 1110 000 0000 01
Q ss_pred cHHHHHHHHHHHhcCceE-EEEEecCCCH-----HHHHHHHhhCCCCCCCcEEEEEecch
Q 002750 271 REEDLERCLYQSLQGYSY-LVVIDDVWQK-----ETWESLKRAFPDSKNGSRVILTTRIR 324 (885)
Q Consensus 271 ~~~~~~~~l~~~l~~~r~-LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iiiTtR~~ 324 (885)
...+.....++.+...+| |+|||.+-.. -..+.+...+...+.+..||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 112233333444544444 9999998532 23445666666667788999999966
No 427
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.67 E-value=0.38 Score=44.90 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999876
No 428
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.63 E-value=0.15 Score=51.96 Aligned_cols=102 Identities=14% Similarity=0.201 Sum_probs=56.1
Q ss_pred CcEEEEEEecCCchHHHHH-HHHhcCcccccccce-eEEEecccccc-HHHHHHHHHHHhcCCCC----CccccccHH--
Q 002750 203 RRSVISIFGMGGLGKTTLA-RKLYHHNDVKHKFAC-CAWVSVSQEYR-TEDLLMRIINSFNIDSP----SNLEKMREE-- 273 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~il~~l~~~~~----~~~~~~~~~-- 273 (885)
+-+-++|.|.+|+|||+|| ..+.+. . +-+. ++++-+++... ..++...+...-..... ...+.....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3467899999999999996 556554 1 2233 36677776544 44555555433211110 000000111
Q ss_pred ---HHHHHHHHHh--cCceEEEEEecCCCH-HHHHHHHhhC
Q 002750 274 ---DLERCLYQSL--QGYSYLVVIDDVWQK-ETWESLKRAF 308 (885)
Q Consensus 274 ---~~~~~l~~~l--~~~r~LlVlDdv~~~-~~~~~l~~~l 308 (885)
...-.+.+++ +++.+|+++||+... ..+.++...+
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~~ 184 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLL 184 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHhc
Confidence 1122233333 589999999999654 5666665443
No 429
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.62 E-value=0.12 Score=53.43 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=56.1
Q ss_pred ccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCC
Q 002750 184 VGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDS 263 (885)
Q Consensus 184 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 263 (885)
.|...+..+.+..+... ...+|.|.|+.|+||||++..+.+. +...-..++.+.-...+.... ..++....
T Consensus 62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~-----~~q~~v~~ 132 (264)
T cd01129 62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPG-----INQVQVNE 132 (264)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCC-----ceEEEeCC
Confidence 34444443333333322 2468999999999999999988765 221111233332221111110 01111110
Q ss_pred CCccccccHHHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHh
Q 002750 264 PSNLEKMREEDLERCLYQSLQGYSYLVVIDDVWQKETWESLKR 306 (885)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~l~~ 306 (885)
. ... .....+...++...=.++++++.+.+....+..
T Consensus 133 ~---~~~---~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~ 169 (264)
T cd01129 133 K---AGL---TFARGLRAILRQDPDIIMVGEIRDAETAEIAVQ 169 (264)
T ss_pred c---CCc---CHHHHHHHHhccCCCEEEeccCCCHHHHHHHHH
Confidence 0 011 234556666766677899999999876554433
No 430
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.62 E-value=0.11 Score=51.95 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+++|+|+.|.|||||++.++.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999863
No 431
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.62 E-value=0.065 Score=57.79 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=61.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
...+.|.|+.|+||||+++.+.+. +.......++.- .+. .+-..... ..+..... . ..+.......+...+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~ti-Edp--~E~~~~~~-~~~i~q~e--v-g~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIITI-EDP--IEYVHRNK-RSLINQRE--V-GLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEEE-cCC--hhhhccCc-cceEEccc--c-CCCCcCHHHHHHHhh
Confidence 478999999999999999998865 333334444432 221 11110000 00000000 0 111123455566777
Q ss_pred cCceEEEEEecCCCHHHHHHHHhhCCCCCCCcEEEEEecchHH
Q 002750 284 QGYSYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTTRIREV 326 (885)
Q Consensus 284 ~~~r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtR~~~v 326 (885)
+..+=.|++|++.+.+.+....... ..|..|+.|....+.
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSA 232 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCH
Confidence 7777799999999888776544332 234446666664443
No 432
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.61 E-value=0.17 Score=48.51 Aligned_cols=120 Identities=17% Similarity=0.091 Sum_probs=63.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccc---cccHHHHHHHH--HHHh--cCCCC-C--cc--ccc
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQ---EYRTEDLLMRI--INSF--NIDSP-S--NL--EKM 270 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i--l~~l--~~~~~-~--~~--~~~ 270 (885)
....|.|+|..|-||||.|....-+ ..++=-.+..+-.-+ .......+..+ +.-. +.... . .. +..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 3468899999999999999877654 222222233332222 22333333331 0000 11000 0 00 001
Q ss_pred cHHHHHHHHHHHhcCceE-EEEEecCCCH-----HHHHHHHhhCCCCCCCcEEEEEecch
Q 002750 271 REEDLERCLYQSLQGYSY-LVVIDDVWQK-----ETWESLKRAFPDSKNGSRVILTTRIR 324 (885)
Q Consensus 271 ~~~~~~~~l~~~l~~~r~-LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iiiTtR~~ 324 (885)
......+..++.+...+| ++|||++-.. -..+.+...+...+.+..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 112223333444544444 9999998543 23566666676667788999999965
No 433
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.60 E-value=0.065 Score=57.74 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=49.2
Q ss_pred ccccccccccHHHHHHHHhcC------------CCCcEEEEEEecCCchHHHHHHHHhcCccccccc---ceeEEEec-c
Q 002750 180 EENVVGFEDDANKLLAHLLKE------------DPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKF---ACCAWVSV-S 243 (885)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~-~ 243 (885)
...++|.+..++.+..++... +...+-+.++|++|+|||++|+.+... ....| +..-|... -
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCc
Confidence 356889988888888777431 112467899999999999999999876 33333 22222221 1
Q ss_pred ccccHHHHHHHHHHHh
Q 002750 244 QEYRTEDLLMRIINSF 259 (885)
Q Consensus 244 ~~~~~~~~~~~il~~l 259 (885)
...+.+..++.++...
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 1234555666655544
No 434
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.58 E-value=0.028 Score=55.04 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+.++|.|+|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999865
No 435
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.57 E-value=0.12 Score=58.62 Aligned_cols=65 Identities=20% Similarity=0.134 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 191 NKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 191 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
..+-+.|..+=..-.++.|.|++|+|||||+.++... ...+-..+++++..+. .+++...+ +.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs--~~~i~~~~-~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEES--RAQLLRNA-YSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCC--HHHHHHHH-HHcC
Confidence 4455555444446789999999999999999999876 2223345677776543 44444442 4444
No 436
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.56 E-value=0.29 Score=54.46 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.+|++++|+.|+||||++.+++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 479999999999999999999865
No 437
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.54 E-value=0.034 Score=54.10 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=30.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEec
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSV 242 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 242 (885)
.+++.|+|+.|+|||||++.+... ....|..+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--cccccccceeecc
Confidence 478999999999999999999986 5667765565554
No 438
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.54 E-value=0.14 Score=56.09 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=52.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccc-cccHHHHHHHHHHHhcCCCC----Ccccccc-----H
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQ-EYRTEDLLMRIINSFNIDSP----SNLEKMR-----E 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~----~~~~~~~-----~ 272 (885)
+-..++|+|..|+|||||++.+.... .. ...++ +.+++ .-...++....+..-+.... ...+... .
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~--~~-~~gvi-~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT--DA-DVVVI-ALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC--CC-CEEEE-EEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 34689999999999999999888762 21 22233 33333 33344455544443222111 0001111 1
Q ss_pred HHHHHHHHHHh--cCceEEEEEecCCCH-HHHHHH
Q 002750 273 EDLERCLYQSL--QGYSYLVVIDDVWQK-ETWESL 304 (885)
Q Consensus 273 ~~~~~~l~~~l--~~~r~LlVlDdv~~~-~~~~~l 304 (885)
....-.+.+++ +++.+|+++||+... ....++
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~REi 249 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREI 249 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHH
Confidence 11223345555 688999999998543 334444
No 439
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.54 E-value=0.06 Score=52.91 Aligned_cols=43 Identities=28% Similarity=0.291 Sum_probs=28.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccccc--------ceeEEEeccccc
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKF--------ACCAWVSVSQEY 246 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~ 246 (885)
-.++.|+|++|+||||++..+.........| ..++|++.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 3588999999999999998887653222222 368888876653
No 440
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.51 E-value=0.19 Score=59.50 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=80.2
Q ss_pred cccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCC-
Q 002750 187 EDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPS- 265 (885)
Q Consensus 187 ~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~- 265 (885)
...+.+|.+.+. +..|+.|+|+.|.||||-.-.++-+.-. .....+-++-.....+..+...++++++...++
T Consensus 52 ~~~~~~i~~ai~----~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 52 TAVRDEILKAIE----QNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHH----hCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 355677777773 4569999999999999998888765221 223345444444455667788888888764321
Q ss_pred ---------------ccccccHHHHHHHHH-HHhcCceEEEEEecCCCHHH-----HHHHHhhCCCCCCCcEEEEEecch
Q 002750 266 ---------------NLEKMREEDLERCLY-QSLQGYSYLVVIDDVWQKET-----WESLKRAFPDSKNGSRVILTTRIR 324 (885)
Q Consensus 266 ---------------~~~~~~~~~~~~~l~-~~l~~~r~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~iiiTtR~~ 324 (885)
...-++...+.+.++ ..+=.+=-.+|+|++.+... +.-+...+......-||||+|-.-
T Consensus 126 VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATl 205 (845)
T COG1643 126 VGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATL 205 (845)
T ss_pred eeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 112234444544444 22222233799999976532 122222233334458999998755
Q ss_pred HHh
Q 002750 325 EVA 327 (885)
Q Consensus 325 ~v~ 327 (885)
+..
T Consensus 206 d~~ 208 (845)
T COG1643 206 DAE 208 (845)
T ss_pred CHH
Confidence 443
No 441
>PRK03839 putative kinase; Provisional
Probab=94.51 E-value=0.024 Score=55.06 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999987
No 442
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.50 E-value=0.35 Score=52.99 Aligned_cols=124 Identities=19% Similarity=0.292 Sum_probs=66.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCC------Cc---cccccHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSP------SN---LEKMREE 273 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------~~---~~~~~~~ 273 (885)
.-..++|+|..|+|||||+..++.... . ...++...-.+.....+++...+..-+.... .+ .......
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK--A-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC--C-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 446889999999999999999987632 1 2233333223335556666655554332211 00 0011122
Q ss_pred HHHHHHHHHh--cCceEEEEEecCCCH-HHHHHHHhhCCCCC-CCcEEEEEecchHHhhc
Q 002750 274 DLERCLYQSL--QGYSYLVVIDDVWQK-ETWESLKRAFPDSK-NGSRVILTTRIREVAER 329 (885)
Q Consensus 274 ~~~~~l~~~l--~~~r~LlVlDdv~~~-~~~~~l~~~l~~~~-~gs~iiiTtR~~~v~~~ 329 (885)
...-.+.+++ +++++|+++||+... +...++...+..-. .|--..+.|....+.+.
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~~L~ER 291 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLER 291 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccchhHHHH
Confidence 2333344444 588999999999643 34455544332111 24444554444444443
No 443
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.49 E-value=0.095 Score=58.48 Aligned_cols=53 Identities=25% Similarity=0.135 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc
Q 002750 191 NKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE 245 (885)
Q Consensus 191 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 245 (885)
..+-+.|..+=....++.|.|.+|+|||||+..++.. ....-..++|++..+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES 119 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc
Confidence 3444444434345679999999999999999999875 2222235788886543
No 444
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.48 E-value=0.098 Score=53.77 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999865
No 445
>PRK04040 adenylate kinase; Provisional
Probab=94.47 E-value=0.03 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..+|.|+|++|+||||+++.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 446
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.46 E-value=0.09 Score=58.45 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=53.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccccccee-EEEeccccccHHHHHHHHHHHhcC-------CC
Q 002750 192 KLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACC-AWVSVSQEYRTEDLLMRIINSFNI-------DS 263 (885)
Q Consensus 192 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~~~~~~~~~~~~~~il~~l~~-------~~ 263 (885)
+++++|..-. .-.-..|+|++|+|||||++.+.+... ..+-++. +.+-+.+....-. .+-+.+.. ..
T Consensus 405 RvIDll~PIG-kGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVt---dm~rsVkgeVVasT~D~ 479 (672)
T PRK12678 405 RVIDLIMPIG-KGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVT---DMQRSVKGEVIASTFDR 479 (672)
T ss_pred eeeeeecccc-cCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHH---HHHHhccceEEEECCCC
Confidence 4555554432 345678999999999999999998521 1122333 3444555433222 22222211 11
Q ss_pred CCccccccHHHHHHHHHHHh--cCceEEEEEecCCC
Q 002750 264 PSNLEKMREEDLERCLYQSL--QGYSYLVVIDDVWQ 297 (885)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~ 297 (885)
+ .........+.-.+.+++ .++.+||++|++..
T Consensus 480 p-~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 480 P-PSDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 1 001111223333344454 68999999999954
No 447
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.46 E-value=0.099 Score=58.12 Aligned_cols=25 Identities=44% Similarity=0.573 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..++++|+|++|+||||++.++...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999888754
No 448
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.46 E-value=0.3 Score=49.15 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.+++|+|+.|.|||||++.+...
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999754
No 449
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.46 E-value=0.17 Score=53.27 Aligned_cols=91 Identities=13% Similarity=0.255 Sum_probs=50.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccc-cccHHHHHHHHHHHhcCCCC----Cc-----cccccH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQ-EYRTEDLLMRIINSFNIDSP----SN-----LEKMRE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~----~~-----~~~~~~ 272 (885)
....++|+|..|+|||||++.+..... . +..+..-++. .-+..++....+..-..... .. ......
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT--A--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC--C--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346789999999999999999887622 1 2333344433 23445555555443222111 00 001111
Q ss_pred HHHHHHHHHHh--cCceEEEEEecCCC
Q 002750 273 EDLERCLYQSL--QGYSYLVVIDDVWQ 297 (885)
Q Consensus 273 ~~~~~~l~~~l--~~~r~LlVlDdv~~ 297 (885)
....-.+.+++ +++.+|+++||+..
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 12223334444 68899999999854
No 450
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.46 E-value=0.26 Score=48.80 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=31.7
Q ss_pred HHHHHhcCceEEEEEecCC---CHHHHH-HHHhhCCCCC-C-CcEEEEEecchHHhhc
Q 002750 278 CLYQSLQGYSYLVVIDDVW---QKETWE-SLKRAFPDSK-N-GSRVILTTRIREVAER 329 (885)
Q Consensus 278 ~l~~~l~~~r~LlVlDdv~---~~~~~~-~l~~~l~~~~-~-gs~iiiTtR~~~v~~~ 329 (885)
.+.+.+....-++++|+.. |....+ .+...+.... . |..||++|.+......
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 3455666677799999975 333444 4444443322 2 5568888888776654
No 451
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.44 E-value=0.075 Score=55.02 Aligned_cols=42 Identities=31% Similarity=0.347 Sum_probs=35.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE 245 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 245 (885)
+..+++.|+|.+|+|||+++.++... ...+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC
Confidence 56789999999999999999999876 4555778999998764
No 452
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.43 E-value=0.41 Score=47.34 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.+++|+|+.|+|||||++.+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 4479999999999999999999875
No 453
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.42 E-value=0.22 Score=57.65 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+...++|+|+.|+|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999753
No 454
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.41 E-value=0.049 Score=53.92 Aligned_cols=22 Identities=27% Similarity=0.230 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002750 205 SVISIFGMGGLGKTTLARKLYH 226 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~ 226 (885)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999984
No 455
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.40 E-value=0.15 Score=56.05 Aligned_cols=99 Identities=13% Similarity=0.224 Sum_probs=54.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCC------Cc---cccccHH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSP------SN---LEKMREE 273 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------~~---~~~~~~~ 273 (885)
+-..++|.|..|+|||||++.+...... -..+++..-.+.-...++...+...-..... .+ .......
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999999876321 1234444333333445555555443222111 00 0011112
Q ss_pred HHHHHHHHHh--cCceEEEEEecCCCH-HHHHHH
Q 002750 274 DLERCLYQSL--QGYSYLVVIDDVWQK-ETWESL 304 (885)
Q Consensus 274 ~~~~~l~~~l--~~~r~LlVlDdv~~~-~~~~~l 304 (885)
...-.+.+++ +++.+|+++||+... ....++
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr~A~A~REi 272 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTRFARAQREI 272 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHH
Confidence 2233344454 588999999998543 334444
No 456
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.40 E-value=0.078 Score=53.07 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.|.|+|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999865
No 457
>PRK06217 hypothetical protein; Validated
Probab=94.39 E-value=0.064 Score=52.15 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEecCCchHHHHHHHHhcCc
Q 002750 206 VISIFGMGGLGKTTLARKLYHHN 228 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~~ 228 (885)
.|.|.|.+|+||||+|+++.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999763
No 458
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.39 E-value=0.21 Score=48.95 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.+++|+|+.|.|||||++.+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999999863
No 459
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.38 E-value=0.28 Score=50.11 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.+++|+|+.|+|||||++.+...
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999875
No 460
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.88 Score=44.82 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=37.0
Q ss_pred cccccccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 181 ENVVGFEDDANKLLAHLLKE-----------DPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.++-|.+..++++++.+.-. -..++-|..+|++|.|||-+|++.+..
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHh
Confidence 35678999999999887422 123566889999999999999998866
No 461
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.34 E-value=0.16 Score=55.61 Aligned_cols=99 Identities=14% Similarity=0.230 Sum_probs=57.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc-HHHHHHHHHHHhcCCCC----Cccccc-----cH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR-TEDLLMRIINSFNIDSP----SNLEKM-----RE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~----~~~~~~-----~~ 272 (885)
+...++|.|..|+|||||.+.+++... -+.++++-+++... ..++....+..-+.... ...+.. ..
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 456899999999999999999998632 24667777776543 33444443332221111 000010 11
Q ss_pred HHHHHHHHHHh--cCceEEEEEecCCCH-HHHHHHH
Q 002750 273 EDLERCLYQSL--QGYSYLVVIDDVWQK-ETWESLK 305 (885)
Q Consensus 273 ~~~~~~l~~~l--~~~r~LlVlDdv~~~-~~~~~l~ 305 (885)
....-.+.+++ +++++|+++||+... ....++.
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REis 272 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIG 272 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHH
Confidence 11222344444 689999999999543 3444443
No 462
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.19 Score=53.28 Aligned_cols=97 Identities=25% Similarity=0.184 Sum_probs=56.3
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCC--Cccc
Q 002750 191 NKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSP--SNLE 268 (885)
Q Consensus 191 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~ 268 (885)
.++...|-.+--.-.+|.|-|-+|+|||||..++..+ ....- .+.+|+-.+... . .+--++.++.... .-..
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~~--Q-iklRA~RL~~~~~~l~l~a 153 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESLQ--Q-IKLRADRLGLPTNNLYLLA 153 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCHH--H-HHHHHHHhCCCccceEEeh
Confidence 4444444333224579999999999999999999887 33333 678887655322 1 2222444543322 1112
Q ss_pred cccHHHHHHHHHHHhcCceEEEEEecCC
Q 002750 269 KMREEDLERCLYQSLQGYSYLVVIDDVW 296 (885)
Q Consensus 269 ~~~~~~~~~~l~~~l~~~r~LlVlDdv~ 296 (885)
..+.+.+...+. ..++-++|+|-+.
T Consensus 154 Et~~e~I~~~l~---~~~p~lvVIDSIQ 178 (456)
T COG1066 154 ETNLEDIIAELE---QEKPDLVVIDSIQ 178 (456)
T ss_pred hcCHHHHHHHHH---hcCCCEEEEeccc
Confidence 223444443333 3566799999884
No 463
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.30 E-value=0.19 Score=53.24 Aligned_cols=37 Identities=35% Similarity=0.465 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 191 NKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 191 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..+.+.+....++..+|+|.|++|+||||++..+...
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4555555443456789999999999999999987765
No 464
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.30 E-value=0.97 Score=51.50 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=37.0
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..++|....+.++...+.........|.|+|.+|+|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 35889888888887776543334456789999999999999999875
No 465
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=94.26 E-value=0.42 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
-.+++|.|+.|.|||||.+.+..-
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999864
No 466
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.23 E-value=0.048 Score=55.13 Aligned_cols=42 Identities=33% Similarity=0.348 Sum_probs=30.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCcccccc-cceeEEEecccc
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHHNDVKHK-FACCAWVSVSQE 245 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~ 245 (885)
+...++.|.|++|+|||+++.++... .... =..++|++..+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS-
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCC
Confidence 45689999999999999999987754 2222 245788887654
No 467
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.22 E-value=0.17 Score=50.48 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999764
No 468
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.22 E-value=0.57 Score=50.30 Aligned_cols=57 Identities=26% Similarity=0.351 Sum_probs=37.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc--HHHHHHHHHHHhcCC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR--TEDLLMRIINSFNID 262 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~ 262 (885)
.+.||..+|.-|.||||.|.++++. .+. ....+-+...+.+. +-+-++.+..+.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~--lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKY--LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHH--HHH-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 4789999999999999999888776 333 22233333333333 345567777777653
No 469
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.22 E-value=0.13 Score=56.59 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=58.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc-HHHHHHHHHHHhcCCCC----Ccccc-----ccH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR-TEDLLMRIINSFNIDSP----SNLEK-----MRE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~----~~~~~-----~~~ 272 (885)
+-.-++|.|.+|+|||||+..+...... .+=+.++++-+++... ..+++..+...-..... ...+. ...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 4467899999999999999988665211 1113567777766543 45566666553222111 00011 111
Q ss_pred HHHHHHHHHHh---cCceEEEEEecCCCH-HHHHHHH
Q 002750 273 EDLERCLYQSL---QGYSYLVVIDDVWQK-ETWESLK 305 (885)
Q Consensus 273 ~~~~~~l~~~l---~~~r~LlVlDdv~~~-~~~~~l~ 305 (885)
....-.+.+++ +++++|+++|++... ....++.
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REis 258 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVS 258 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHH
Confidence 22233455555 679999999999543 3444443
No 470
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.21 E-value=0.052 Score=47.81 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=34.0
Q ss_pred cccccccccHHHHHHHHh----cC-CCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 181 ENVVGFEDDANKLLAHLL----KE-DPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~----~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..++|-+-..+.+++.+. .. ..++-|++.+|++|+|||.+++.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 456776665655555553 22 456789999999999999988877664
No 471
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.21 E-value=0.05 Score=54.53 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYH 226 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~ 226 (885)
..+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 467999999999999999888753
No 472
>PRK00625 shikimate kinase; Provisional
Probab=94.20 E-value=0.029 Score=53.59 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999876
No 473
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.59 Score=46.92 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=35.9
Q ss_pred ccccccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 182 NVVGFEDDANKLLAHLLKE-----------DPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
++-|.+..+++|.+...-. -..++-|.++|.+|.|||-||++|+|.
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 4667888888888876321 124566779999999999999999998
No 474
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.13 E-value=0.042 Score=54.52 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=23.8
Q ss_pred CCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 200 EDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 200 ~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.....+.+.|+|++|+|||||++.+.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3346789999999999999999999754
No 475
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.12 E-value=0.046 Score=54.51 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYH 226 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~ 226 (885)
..+++.|.|+.|.||||+.+.+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357889999999999999988865
No 476
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.11 E-value=0.24 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 202 PRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 202 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.+..+|.|+|.+|+|||||+..+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999999876
No 477
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.10 E-value=0.037 Score=53.37 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
....|.|+|++|+||||+|+.+.+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999986
No 478
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.10 E-value=0.063 Score=52.80 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 002750 205 SVISIFGMGGLGKTTLARKLYH 226 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~ 226 (885)
++++|+|+.|.||||+.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998864
No 479
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.09 E-value=0.045 Score=51.79 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
..++++|+|+.|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999876
No 480
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.09 E-value=0.071 Score=51.96 Aligned_cols=97 Identities=21% Similarity=0.189 Sum_probs=48.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHh
Q 002750 204 RSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFNIDSPSNLEKMREEDLERCLYQSL 283 (885)
Q Consensus 204 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l 283 (885)
...+.|+|+.|+||||+++.+... .... ..++-+.-....... ..... ++..... ...........+.+...+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~--i~~~-~~~i~ied~~E~~~~--~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~~l 97 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF--IPPD-ERIITIEDTAELQLP--HPNWV-RLVTRPG-NVEGSGEVTMADLLRSAL 97 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh--cCCC-CCEEEECCccccCCC--CCCEE-EEEEecC-CCCCCCccCHHHHHHHHh
Confidence 468999999999999999998865 2211 122222111000000 00000 0000000 000011122344455556
Q ss_pred cCceEEEEEecCCCHHHHHHHHhh
Q 002750 284 QGYSYLVVIDDVWQKETWESLKRA 307 (885)
Q Consensus 284 ~~~r~LlVlDdv~~~~~~~~l~~~ 307 (885)
+..+=.++++.+.+.+.++.+...
T Consensus 98 R~~pd~i~igEir~~ea~~~~~a~ 121 (186)
T cd01130 98 RMRPDRIIVGEVRGGEALDLLQAM 121 (186)
T ss_pred ccCCCEEEEEccCcHHHHHHHHHH
Confidence 666668899999988877655443
No 481
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.06 E-value=0.53 Score=46.76 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.+++|.|+.|.|||||++.+..-
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999753
No 482
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.06 E-value=0.51 Score=49.56 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.-.++++.|+.|+|||||.+.+..-
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999999875
No 483
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.06 E-value=0.037 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 002750 205 SVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.++.|+|++|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998775
No 484
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.04 E-value=0.17 Score=55.38 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=54.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccc-ccHHHHHHHHHHHhcCCCC------C---ccccccH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQE-YRTEDLLMRIINSFNIDSP------S---NLEKMRE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~------~---~~~~~~~ 272 (885)
+-..++|+|..|+|||||++.+.+.. +.+..+++.+++. ....+++.+....-..... . .......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 45689999999999999999998752 2334455555543 3344555544321111100 0 0001111
Q ss_pred HHHHHHHHHHh--cCceEEEEEecCCCH-HHHHHHH
Q 002750 273 EDLERCLYQSL--QGYSYLVVIDDVWQK-ETWESLK 305 (885)
Q Consensus 273 ~~~~~~l~~~l--~~~r~LlVlDdv~~~-~~~~~l~ 305 (885)
....-.+.+++ +++++|+++||+... ....++.
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REis 265 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIA 265 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHHHHH
Confidence 11223344454 588999999999543 3444443
No 485
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.04 E-value=0.12 Score=56.65 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=61.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEecccccc-HHHHHHHHHHHhcCCCC------C---ccccccH
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYR-TEDLLMRIINSFNIDSP------S---NLEKMRE 272 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~------~---~~~~~~~ 272 (885)
+-.-++|.|.+|+|||+|+..+..... +.+-+.++|+-+++... ..++...+...-..... . .......
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 446789999999999999999877622 22346788888876654 34555555543221111 0 0011111
Q ss_pred HHHHHHHHHHh---cCceEEEEEecCCCH-HHHHHHHh
Q 002750 273 EDLERCLYQSL---QGYSYLVVIDDVWQK-ETWESLKR 306 (885)
Q Consensus 273 ~~~~~~l~~~l---~~~r~LlVlDdv~~~-~~~~~l~~ 306 (885)
....-.+.+++ +++++|+++||+... ..+.++..
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl 253 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSG 253 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHHHHHHHHHHH
Confidence 22333455555 468999999999543 44445443
No 486
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.00 E-value=0.18 Score=56.35 Aligned_cols=53 Identities=25% Similarity=0.112 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccc
Q 002750 190 ANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQ 244 (885)
Q Consensus 190 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 244 (885)
...+-+.|..+=..-.++.|.|.+|+|||||+..+.... ...-..++|++..+
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~--a~~g~kvlYvs~EE 132 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQL--AKNQMKVLYVSGEE 132 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEECcC
Confidence 345555554443456899999999999999999987652 22223577887654
No 487
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.00 E-value=0.038 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 002750 205 SVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 205 ~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999876
No 488
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=93.99 E-value=0.43 Score=47.95 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=29.5
Q ss_pred EEEEEecCCC---HHHHHHHHhhCCCCCCCcEEEEEecchHHhhcc
Q 002750 288 YLVVIDDVWQ---KETWESLKRAFPDSKNGSRVILTTRIREVAERS 330 (885)
Q Consensus 288 ~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iiiTtR~~~v~~~~ 330 (885)
-++||||++. ......+...+.....++.+||||..+.+...+
T Consensus 160 p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 160 PFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4899999974 455566666665555678899999999888765
No 489
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.99 E-value=0.12 Score=54.69 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
...+++|+|+.|+|||||++.+..-
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999864
No 490
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.97 E-value=0.032 Score=55.08 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+|+|.|++|+||||+|+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999765
No 491
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.95 E-value=0.48 Score=47.75 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
...+++|+|+.|.|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999864
No 492
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.94 E-value=0.075 Score=51.72 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=18.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 002750 206 VISIFGMGGLGKTTLARKLYH 226 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~ 226 (885)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999998873
No 493
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.94 E-value=0.085 Score=49.15 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=30.1
Q ss_pred cccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 002750 187 EDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 187 ~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.+.++++.+++. -+++.++|..|+|||||+..+...
T Consensus 23 ~~g~~~l~~~l~-----~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLK-----GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHT-----TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhc-----CCEEEEECCCCCCHHHHHHHHHhh
Confidence 355677888772 279999999999999999999987
No 494
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.90 E-value=0.088 Score=60.88 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=55.7
Q ss_pred cccccccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccccccceeEEEeccccccHHHHHHHHHHHhc
Q 002750 181 ENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFACCAWVSVSQEYRTEDLLMRIINSFN 260 (885)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 260 (885)
+.++|.++.++.+...+... +.+.++|++|+||||+|+.+.+.. ...+++..+|...+ ..+...+++.+..+++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np-~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNP-EDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCC-CcchHHHHHHHHHhcC
Confidence 46889888888887766543 368899999999999999998762 33456778887763 3466677777776665
Q ss_pred C
Q 002750 261 I 261 (885)
Q Consensus 261 ~ 261 (885)
.
T Consensus 105 ~ 105 (637)
T PRK13765 105 K 105 (637)
T ss_pred H
Confidence 4
No 495
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.89 E-value=0.044 Score=50.23 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
.++|+|+.|+|||||++.+.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999976
No 496
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.88 E-value=0.59 Score=52.44 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
...+++|+|+.|+|||||++.+...
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999875
No 497
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.87 E-value=0.3 Score=51.87 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.9
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 002750 207 ISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 207 v~I~G~~GiGKTtLa~~v~~~ 227 (885)
+.+.|++|+||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999865
No 498
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.85 E-value=0.036 Score=53.51 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 002750 206 VISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 206 vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 499
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.84 E-value=2.6 Score=44.66 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=34.3
Q ss_pred eeecCCCChhhHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCchHHH
Q 002750 336 AYELPFLRPDESWKLFCEKAFQSFNAD-EGLEKLGREMLEKCGGLPLAI 383 (885)
Q Consensus 336 ~~~l~~L~~~e~~~lf~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plai 383 (885)
++++++++.+|+..++....-.+--.. ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988764433222 233556667777779999644
No 500
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.83 E-value=0.05 Score=52.45 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 002750 203 RRSVISIFGMGGLGKTTLARKLYHH 227 (885)
Q Consensus 203 ~~~vv~I~G~~GiGKTtLa~~v~~~ 227 (885)
+..+|+|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999876
Done!