Query 002750
Match_columns 885
No_of_seqs 362 out of 4092
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 18:05:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002750.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1464-1468//hhsearch_pdb/002750hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 388.2 28.4 319 184-520 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 359.8 23.9 317 177-518 120-452 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 316.9 18.9 289 180-511 127-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 1.0 1 1 299.8 24.5 311 178-516 121-450 (591)
5 3oja_B Anopheles plasmodium-re 1.0 1 1 201.1 17.1 300 554-884 48-357 (597)
6 4ecn_A Leucine-rich repeat pro 1.0 1 1 199.8 15.9 291 554-865 512-840 (876)
7 4eco_A Uncharacterized protein 1.0 1 1 198.2 12.7 323 536-884 248-631 (636)
8 3rgz_A Protein brassinosteroid 1.0 1 1 196.6 13.9 289 556-864 393-739 (768)
9 4eco_A Uncharacterized protein 1.0 1 1 196.1 15.6 307 555-884 247-599 (636)
10 4ecn_A Leucine-rich repeat pro 1.0 1 1 195.8 17.4 284 585-884 489-839 (876)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=388.16 Aligned_cols=319 Identities=19% Similarity=0.265 Sum_probs=262.3
Q ss_pred CCCCCCHHHHHHHHHCC-CCCCEEEEEEECCCCHHHHHHHHHHC--CCCCCCCCCEEEEEECCCCC--CHHHHHHHHHHH
Q ss_conf 02400189999998517-99947999990697629999999844--85543454405999646546--489999999987
Q 002750 184 VGFEDDANKLLAHLLKE-DPRRSVISIFGMGGLGKTTLARKLYH--HNDVKHKFACCAWVSVSQEY--RTEDLLMRIINS 258 (885)
Q Consensus 184 vGr~~~~~~i~~~L~~~-~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~ 258 (885)
|||++++++|.++|... +...++|+|+||||+||||||+++|+ +.++..+|++++|+++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 78417999999987251578962899986999988999999998406987466995799997898787999999999999
Q ss_pred HCCCC----CCCCCCCCHHHHHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHCCCCC
Q ss_conf 15799----97110045999999999881595-09999855789888999976399999994899992405774024778
Q 002750 259 FNIDS----PSNLEKMREEDLERCLYQSLQGY-SYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTTRIREVAERSDER 333 (885)
Q Consensus 259 l~~~~----~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDd~~~~~~~~~l~~~l~~~~~~s~iiiTtr~~~v~~~~~~~ 333 (885)
++... ....+..+.+.+...+.+.+.++ |+||||||+|+.+.+ .+.. .+||+||||||+..++..+...
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CCCC-----CCCCEEEEECCCHHHHHHCCCC
T ss_conf 853755345555331469999999999976898489999799971441-5432-----6998899974977999970889
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-C
Q ss_conf 730104899956689999899824799994679999999988099627999997450599958899999998774411-8
Q 002750 334 THAYELPFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLSKKKPQEWRIVRDHIWRHLRA-D 412 (885)
Q Consensus 334 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~~~~~~-~ 412 (885)
...+++++|+.+++|+||.+.++.... .+.+.+++.+|+++|+|+|||++++|+.++... |..+ ..+.+.... .
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~~~~ 359 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLESRG 359 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHHHHC
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH---HHHH-HHHHHHHHCCC
T ss_conf 738989998989999999987448998-556899999999995998399999999844344---8999-87578761364
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHH
Q ss_conf 201355664142357186658873-----------51467999755968899999991--95567888711999999999
Q 002750 413 SIQISHLLDLSFNDLSYQLKLCFL-----------YLGIFPEDADINIERLIRLIVAE--GFIDQNEDDQVMEDVAKDIL 479 (885)
Q Consensus 413 ~~~i~~~l~~sy~~L~~~~k~~~~-----------~~~~fp~~~~i~~~~li~~w~~e--g~i~~~~~~~~~~~~~~~~l 479 (885)
...+..++.+||+.||+++|.||+ |||+||+++.|+ +.+|+++ ||+.....+.+.++.++ ++
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l 434 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL 434 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHHHHHH-HH
T ss_conf 77789897516202267999997526522336743235608997666----53311013550026778999999999-99
Q ss_pred HHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCE
Q ss_conf 99987101333656675010999795689999998532181
Q 002750 480 NELINRSLIQIGKISWGRIATCRVHDLLRDLAIQKAKELNF 520 (885)
Q Consensus 480 ~~L~~~~ll~~~~~~~~~~~~~~~H~li~~~~~~~~~~e~~ 520 (885)
++|+++||++.... ++..+|+|||+||+|++.++.++.+
T Consensus 435 ~~L~~rsLl~~~~~--~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 435 KRLSKRGALLSGKR--MPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHTTTBSSCSEEEC--SSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHCCCEEEECC--CCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 99987588367147--9804999676999999999889899
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=359.76 Aligned_cols=317 Identities=20% Similarity=0.304 Sum_probs=255.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCC-CCCC-CEEEEEECCCCCC--HHHHH
Q ss_conf 565564002400189999998517999479999906976299999998448554-3454-4059996465464--89999
Q 002750 177 YAVEENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDV-KHKF-ACCAWVSVSQEYR--TEDLL 252 (885)
Q Consensus 177 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~--~~~~~ 252 (885)
+..+..||||++++++|.++|...+...++|+|+||||+||||||++++++.+. ..+| +.++|+++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHH
T ss_conf 99986412579999999999861358877799991898888899999860756788627881799997885726799999
Q ss_pred HHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHC
Q ss_conf 999987157999-7110045999999999881595--0999985578988899997639999999489999240577402
Q 002750 253 MRIINSFNIDSP-SNLEKMREEDLERCLYQSLQGY--SYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTTRIREVAER 329 (885)
Q Consensus 253 ~~il~~l~~~~~-~~~~~~~~~~~~~~l~~~l~~~--~~LlVlDd~~~~~~~~~l~~~l~~~~~~s~iiiTtr~~~v~~~ 329 (885)
..++..+..... ......+.+.+...+...+.++ |+||||||+|+...|..+ .+|++||||||++.++..
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHHHHH
T ss_conf 9999986553033347887778999999999735678789999567997788763-------689789999277899876
Q ss_pred CCCCCCEEECCC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 477873010489-9956689999899824799994679999999988099627999997450599958899999998774
Q 002750 330 SDERTHAYELPF-LRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLSKKKPQEWRIVRDHIWRH 408 (885)
Q Consensus 330 ~~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~~~ 408 (885)
+......+++.+ |++++++++|...++.. .+.+++.+.+|+++|+|+||||+++|+.++... ..|...+..+...
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNK 348 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSC
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHCCC---HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHHH
T ss_conf 348843798258888788999999865798---134838899999984997799999999862480-5799999998650
Q ss_pred HHCC--------CHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4118--------20135566414235718665887351467999755968899999991955678887119999999999
Q 002750 409 LRAD--------SIQISHLLDLSFNDLSYQLKLCFLYLGIFPEDADINIERLIRLIVAEGFIDQNEDDQVMEDVAKDILN 480 (885)
Q Consensus 409 ~~~~--------~~~i~~~l~~sy~~L~~~~k~~~~~~~~fp~~~~i~~~~li~~w~~eg~i~~~~~~~~~~~~~~~~l~ 480 (885)
.... ...+..++.+||+.|+++.|.||+||++||+++.|+.+.++.+|.++ ++.++.+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~ 416 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQ 416 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC------------HHHHHHHHH
T ss_conf 44303465564467799999989986799999999972813799751899999885898------------889999999
Q ss_pred HHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHC
Q ss_conf 99871013336566750109997956899999985321
Q 002750 481 ELINRSLIQIGKISWGRIATCRVHDLLRDLAIQKAKEL 518 (885)
Q Consensus 481 ~L~~~~ll~~~~~~~~~~~~~~~H~li~~~~~~~~~~e 518 (885)
+|++++|++... +++..+|+||+++|+|++..+.++
T Consensus 417 ~L~~~sl~~~~~--~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 417 EFVNKSLLFCNR--NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHTTSCEEEE--SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHCCCEEEEC--CCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 997446338963--798118996689999987450678
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=316.90 Aligned_cols=289 Identities=20% Similarity=0.239 Sum_probs=227.0
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCE-EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 564002400189999998517999479999906976299999998448554345440-5999646546489999999987
Q 002750 180 EENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDVKHKFAC-CAWVSVSQEYRTEDLLMRIINS 258 (885)
Q Consensus 180 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~~ 258 (885)
....|||+.++++|.++|...+ ..++|+|+||||+||||||++++++.++..+|+. ++|+++++.++...++..++..
T Consensus 127 tk~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 127 AKYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 7877892899999999974358-971899976999667999999997149887489938999828999999999999999
Q ss_pred HCCCC---CCCC-----CCCCHHHHHHHHHHHH---CCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHH
Q ss_conf 15799---9711-----0045999999999881---59509999855789888999976399999994899992405774
Q 002750 259 FNIDS---PSNL-----EKMREEDLERCLYQSL---QGYSYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTTRIREVA 327 (885)
Q Consensus 259 l~~~~---~~~~-----~~~~~~~~~~~l~~~l---~~~~~LlVlDd~~~~~~~~~l~~~l~~~~~~s~iiiTtr~~~v~ 327 (885)
+.... .... ...+.+.....+.+.+ .++|+||||||+|+.+.|+.+. +||+||||||++.++
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC-------CCEEEEEECCCHHHH
T ss_conf 8622721022001346799999999999999998504788799871868189998647-------982999944373799
Q ss_pred HCCCCCCCEEECC------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC-C-CCHHHHH
Q ss_conf 0247787301048------999566899998998247999946799999999880996279999974505-9-9958899
Q 002750 328 ERSDERTHAYELP------FLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLS-K-KKPQEWR 399 (885)
Q Consensus 328 ~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~-~-~~~~~w~ 399 (885)
..+.. ...+.++ +|+.+|+|+||.... +.. . .++..++ |+|+|||++++|+.|+ + .+.+.|.
T Consensus 279 ~~l~g-~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSA-ATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHH-HSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HHCCC-CEEEEECCCCCCCCCCHHHHHHHHHHHC-CCC--H---HHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 86689-7089946865568969999999999974-998--8---9999999---69899999999999848899799986
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999877441182013556641423571866-58873514679997559688999999919556788871199999999
Q 002750 400 IVRDHIWRHLRADSIQISHLLDLSFNDLSYQL-KLCFLYLGIFPEDADINIERLIRLIVAEGFIDQNEDDQVMEDVAKDI 478 (885)
Q Consensus 400 ~~~~~l~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~~~~~~~fp~~~~i~~~~li~~w~~eg~i~~~~~~~~~~~~~~~~ 478 (885)
.. ....+..++..||+.|+++. |.||+|||+||+++.|+.+.++.+|+++| ++.++.+
T Consensus 349 ~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~ 407 (1221)
T 1vt4_I 349 HV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVV 407 (1221)
T ss_dssp HC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHH
T ss_pred CC----------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC-----------HHHHHHH
T ss_conf 69----------86189999999998488999999999971779999877999998766778-----------8999999
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHH
Q ss_conf 999987101333656675010999795689999
Q 002750 479 LNELINRSLIQIGKISWGRIATCRVHDLLRDLA 511 (885)
Q Consensus 479 l~~L~~~~ll~~~~~~~~~~~~~~~H~li~~~~ 511 (885)
+++|+++||++... ...+|+|||++++++
T Consensus 408 L~eLvdRSLLq~d~----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 408 VNKLHKYSLVEKQP----KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHTSSSSSBCS----SSSEEBCCCHHHHHH
T ss_pred HHHHHHHCCEEEEC----CCCEEEEHHHHHHHH
T ss_conf 99999619889868----999898609999985
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=299.81 Aligned_cols=311 Identities=22% Similarity=0.331 Sum_probs=238.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCC-CCCC-CEEEEEECCCCCCHHHHHH--
Q ss_conf 65564002400189999998517999479999906976299999998448554-3454-4059996465464899999--
Q 002750 178 AVEENVVGFEDDANKLLAHLLKEDPRRSVISIFGMGGLGKTTLARKLYHHNDV-KHKF-ACCAWVSVSQEYRTEDLLM-- 253 (885)
Q Consensus 178 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~-- 253 (885)
..+..||||+.+++++.+++....+..++|.|+||||+||||||.+++++... ..+| +.++|++++... ...++.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHHHH
T ss_pred CCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCCC-HHHHHHHH
T ss_conf 99871405299999999998603688846999769989889999999835568885289965999778776-68899999
Q ss_pred -HHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHCC--CEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHC
Q ss_conf -9998715799-9711004599999999988159--50999985578988899997639999999489999240577402
Q 002750 254 -RIINSFNIDS-PSNLEKMREEDLERCLYQSLQG--YSYLVVIDDVWQKETWESLKRAFPDSKNGSRVILTTRIREVAER 329 (885)
Q Consensus 254 -~il~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDd~~~~~~~~~l~~~l~~~~~~s~iiiTtr~~~v~~~ 329 (885)
.++..++... .......+.+.....+...+.+ +++||||||+|+...+.. + ..+++||+|||...++..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHH----H---CCCCEEEEECCCCHHHHH
T ss_conf 999998503556556799889999999999970679986999858998799987----6---379869998988177773
Q ss_pred CCCCCCEEEC---CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 4778730104---8999566899998998247999946799999999880996279999974505999588999999987
Q 002750 330 SDERTHAYEL---PFLRPDESWKLFCEKAFQSFNADEGLEKLGREMLEKCGGLPLAIVVLGGLLSKKKPQEWRIVRDHIW 406 (885)
Q Consensus 330 ~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~~~~l~ 406 (885)
+.. ..+++ .+|+.++++++|...++.. .....+.+.+|+++|+|+|+|++++|+.++... ..|...+..+.
T Consensus 273 ~~~--~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~ 346 (591)
T 1z6t_A 273 VMG--PKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQ 346 (591)
T ss_dssp CCS--CEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred CCC--CCEEEECCCCCCHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_conf 489--826861588999899999999871898---310459999999995898379999999984484-35999999998
Q ss_pred HHHHC--------CCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 74411--------8201355664142357186658873514679997559688999999919556788871199999999
Q 002750 407 RHLRA--------DSIQISHLLDLSFNDLSYQLKLCFLYLGIFPEDADINIERLIRLIVAEGFIDQNEDDQVMEDVAKDI 478 (885)
Q Consensus 407 ~~~~~--------~~~~i~~~l~~sy~~L~~~~k~~~~~~~~fp~~~~i~~~~li~~w~~eg~i~~~~~~~~~~~~~~~~ 478 (885)
..... ...++..++..||+.|+++.|.||+++|+||+++.|+.+.+..+|.++ .+.+..+
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~ 414 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDI 414 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC------------HHHHHHH
T ss_conf 8689876511465437899999999986899999999974556799850899999996658------------8999999
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 99998710133365667501099979568999999853
Q 002750 479 LNELINRSLIQIGKISWGRIATCRVHDLLRDLAIQKAK 516 (885)
Q Consensus 479 l~~L~~~~ll~~~~~~~~~~~~~~~H~li~~~~~~~~~ 516 (885)
+..|++++|++... ++...+|+||+++|++++....
T Consensus 415 l~~L~~~~Ll~~~~--~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 415 LQEFVNKSLLFCDR--NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHTTSSEEEE--ETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHCCCEEEEC--CCCCCEEEECHHHHHHHHHHHH
T ss_conf 99998595868854--8985679976899999986535
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=201.12 Aligned_cols=300 Identities=14% Similarity=0.105 Sum_probs=220.9
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC-HHHCCCCCCCEEEECCCCCCC
Q ss_conf 9976310388323520245777645786732573167986155433334554468883-200165655299722899987
Q 002750 554 DNNLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLP-VEIGQLIHLKYLRLRNSPIDN 632 (885)
Q Consensus 554 ~~~~~lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~vL~L~~~~~~~~~~l~~~~lp-~~i~~l~~L~~L~L~~~~i~~ 632 (885)
...++++.+.+.++.... .++..|..++.|++|++++|. +. .++ ..++.+++|++|++++|.+..
T Consensus 48 l~l~~l~~l~l~~~~l~~------lp~~~~~~l~~L~~L~L~~n~------l~--~~~~~~~~~l~~L~~L~L~~n~l~~ 113 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRK------LPAALLDSFRQVELLNLNDLQ------IE--EIDTYAFAYAHTIQKLYMGFNAIRY 113 (597)
T ss_dssp GGGCCCSEEEESSCEESE------ECTHHHHHCCCCSEEECTTSC------CC--EECTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCEEEEEECCCCCC------CCHHHHCCCCCCCEEECCCCC------CC--CCCHHHHCCCCCCCEEECCCCCCCC
T ss_conf 467886189833897787------698988028997689898997------99--9895786078988889897990899
Q ss_pred CCC-CCCCCCCCCEEECCC-CCCCCCHH-HCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 791-124978763886578-75568732-00332364221---3322333666766787227200265455--6984457
Q 002750 633 LPP-SIEKLQRLQTLDLSD-TLCGIPTE-ISKLTELRHLI---GNFSGYLPIENLTNLRTLKYVSVESWNR--LSPDKLI 704 (885)
Q Consensus 633 lp~-~i~~L~~L~~L~L~~-~~~~lp~~-i~~L~~L~~L~---~~~~~~~~~~~l~~L~~L~~~~~~~~~~--~~l~~l~ 704 (885)
+|+ .++++.+|++|++++ .+..+|.. +..+++|+.|. +.+... +...+..+..|..+++..+.+ ..+..++
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 192 (597)
T 3oja_B 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVDLSLIP 192 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTSCCSBCCGGGCT
T ss_pred CCHHHHCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEEEECCCCCCC-CHHHHHCCCCCCEEECCCCCCCCCCHHHHH
T ss_conf 8978875899998897438999977878764698878898468968987-755552287573788968878876856601
Q ss_pred CCCEEEEECCCCCCHHHCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCCE
Q ss_conf 88803760134310000043445420489755784413775445566678998865179811159898234403999527
Q 002750 705 NLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLCDCPCLSDLRLRGKIEKLPEDIHVILPNLEC 784 (885)
Q Consensus 705 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~g~~~~lp~~~~~~l~~L~~ 784 (885)
+|+.|+++++.+.+ +....+|+.+++..+..... +. ..+++|+.|++++|.-.-+.++.. +++|+.
T Consensus 193 ~L~~L~l~~n~l~~---------l~~~~~L~~L~ls~n~l~~~--~~--~~~~~L~~L~L~~n~l~~~~~l~~-l~~L~~ 258 (597)
T 3oja_B 193 SLFHANVSYNLLST---------LAIPIAVEELDASHNSINVV--RG--PVNVELTILKLQHNNLTDTAWLLN-YPGLVE 258 (597)
T ss_dssp TCSEEECCSSCCSE---------EECCTTCSEEECCSSCCCEE--EC--SCCSCCCEEECCSSCCCCCGGGGG-CTTCSE
T ss_pred HHHHHHCCCCCCCC---------CCCCCHHHEEECCCCCCCCC--CC--CCCCCCCEEECCCCCCCCCHHHCC-CCCCCE
T ss_conf 46654201474433---------35773042034467855655--66--557878889898999999756625-898888
Q ss_pred EEEECCCCCCCCHHHHHCCCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCEEECCCCC
Q ss_conf 99743579999905784086899148422555881776448997566626865499752498678542444102045565
Q 002750 785 LSLEDSNLDDDPMPELEKMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLVDELEEWQVEEGAMPRLRGLRIPEHLK 864 (885)
Q Consensus 785 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 864 (885)
|+|++|.+....+..+..+++|+.|+|++|.+.+ ++.....+++|+.|+|+.|.++.++.....+++|+.|++++|.+
T Consensus 259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred EECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 7897996588797785075588888997998887--77432469988389898998885582101489889898989978
Q ss_pred CCCCC-CCCCCCCCCCCCCCC
Q ss_conf 88781-126889998888888
Q 002750 865 SRIPE-RLRSIPPPAEGECEE 884 (885)
Q Consensus 865 ~~lp~-~l~~L~~L~~~~C~~ 884 (885)
..+|. .+..|..|.+.+++.
T Consensus 337 ~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 337 VTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCCCCCTTCCCSEEECCSSCE
T ss_pred CCCCHHHCCCCCEEEEECCCC
T ss_conf 986920139989899239899
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=199.76 Aligned_cols=291 Identities=15% Similarity=0.131 Sum_probs=155.5
Q ss_pred CCCCCCEEEEEECCC-HHH--HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCH--HHCCCCCCCEEEECCC
Q ss_conf 997631038832352-024--57776457867325731679861554333345544688832--0016565529972289
Q 002750 554 DNNLLSRSLLHFNYE-REY--IFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPV--EIGQLIHLKYLRLRNS 628 (885)
Q Consensus 554 ~~~~~lr~L~~~~~~-~~~--~~~~~~~~~~~~~~~~~L~vL~L~~~~~~~~~~l~~~~lp~--~i~~l~~L~~L~L~~~ 628 (885)
..+++|+.|.+.++. ... ....+....+.+..++.|++|++++|. +. .+|. .++.+++|++|++++|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~------L~--~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN------LE--EFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC------CC--BCCCHHHHTTCTTCCEEECTTS
T ss_pred HCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCC------CC--CCCCHHHHHCCCCCCEEECCCC
T ss_conf 379998999896898765664617787523301556883199822894------77--6187235515898898989799
Q ss_pred CCCCCCCCCCCCCCCCEEECCC-CCCCCCHHHCCCCC-CCCC---CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC--
Q ss_conf 9987791124978763886578-75568732003323-6422---1332233366676678--722720026545569--
Q 002750 629 PIDNLPPSIEKLQRLQTLDLSD-TLCGIPTEISKLTE-LRHL---IGNFSGYLPIENLTNL--RTLKYVSVESWNRLS-- 699 (885)
Q Consensus 629 ~i~~lp~~i~~L~~L~~L~L~~-~~~~lp~~i~~L~~-L~~L---~~~~~~~~~~~~l~~L--~~L~~~~~~~~~~~~-- 699 (885)
.+..+| .++++++|+.|++++ .+..+|..+..+++ |+.| .+.+. ..| ..+..+ ..|..++++.+.+..
T Consensus 584 ~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 584 KVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred CCCCCH-HHCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCC-CCC-HHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 825621-2247985007987187125035877525114989998499787-476-4452255677788977088478864
Q ss_pred ------CC--CCCCCCEEEEECCCCCCHHHCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCC--------CCCCCCEEE
Q ss_conf ------84--45788803760134310000043445420489755784413775445566678--------998865179
Q 002750 700 ------PD--KLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLSGERSFDLLQPLC--------DCPCLSDLR 763 (885)
Q Consensus 700 ------l~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~l~--------~~~~L~~L~ 763 (885)
+. .+++|+.|++++|.+..... ..+..+++|+.++++.+... .++.... ++++|+.|+
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~----~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPT----ELFATGSPISTIILSNNLMT--SIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCH----HHHHTTCCCSEEECCSCCCS--CCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred CCCHHHHCCCCCCCCCEEECCCCCCCCCCH----HHHCCCCCCCEEECCCCCCC--CCCHHHHCCCCCCCCCCCCCCEEE
T ss_conf 320000001357976889831996886597----88713898899989899688--549678455533432148715898
Q ss_pred EEEE-CCCCCHHHH-HCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCEEEEC------CCCCCEEEEECCCCCCCCCEEE
Q ss_conf 8111-598982344-0399952799743579999905784086899148422------5558817764489975666268
Q 002750 764 LRGK-IEKLPEDIH-VILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSY------DSYSGKKLFCTAKGFPRLEILQ 835 (885)
Q Consensus 764 l~g~-~~~lp~~~~-~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~------n~~~~~~~~~~~~~~~~L~~L~ 835 (885)
+++| +..+|..+. ..+++|+.|+|++|.++. ++..+..+++|+.|+|++ |.+.+ .++.....+++|+.|+
T Consensus 735 Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~-~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR-QWPTGITTCPSLIQLQ 812 (876)
T ss_dssp CCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC-CCCTTGGGCSSCCEEE
T ss_pred CCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCC-CCHHHHHCCCCCCEEE
T ss_conf 889978665277624427986989908997876-10566159998899887997766563244-4868883699878898
Q ss_pred EECCCCCCEEECCCCCCCCCCEEECCCCCC
Q ss_conf 654997524986785424441020455658
Q 002750 836 LLVDELEEWQVEEGAMPRLRGLRIPEHLKS 865 (885)
Q Consensus 836 L~~~~l~~l~~~~~~~~~L~~L~l~~c~~~ 865 (885)
|+.|.+..++.. .+++|+.|++++|++.
T Consensus 813 Ls~N~L~~Ip~~--l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 813 IGSNDIRKVDEK--LTPQLYILDIADNPNI 840 (876)
T ss_dssp CCSSCCCBCCSC--CCSSSCEEECCSCTTC
T ss_pred CCCCCCCCCCHH--HCCCCCEEECCCCCCC
T ss_conf 879978740876--6287788999799888
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=198.18 Aligned_cols=323 Identities=15% Similarity=0.146 Sum_probs=225.5
Q ss_pred CCCCEEEEEECC----CCCCCCCCCCCCEEEEEECCC-HHHHHHHHHHHHHHHC------CCCEEEEEECCCCCCCCCCC
Q ss_conf 576026431138----544578997631038832352-0245777645786732------57316798615543333455
Q 002750 536 VSSCRRQAAYSG----YFWSQDDNNLLSRSLLHFNYE-REYIFQVERDLRWLFT------SFSLLRVYDAEVVNRFRTGI 604 (885)
Q Consensus 536 ~~~~r~l~i~~~----~~~~~~~~~~~lr~L~~~~~~-~~~~~~~~~~~~~~~~------~~~~L~vL~L~~~~~~~~~~ 604 (885)
....+.+.+.++ ........+++|+.|.+.++. ... ...+..+. .++.|++|++++|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~-----~~lp~~~~~L~~~~~l~~L~~L~L~~n~------ 316 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG-----EQLKDDWQALADAPVGEKIQIIYIGYNN------ 316 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH-----HHHHHHHHHHHHSGGGGTCCEEECCSSC------
T ss_pred CCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC-----CCCHHHHHHHHCCCCCCCCCEEECCCCC------
T ss_conf 68788898048857762838883499978897847988766-----5335788754304657888889897993------
Q ss_pred CCCCCCCH--HHCCCCCCCEEEECCCCCC-CCCCCCCCCCCCCEEECCC-CCCCCCHHHCCCCC-CCCCC---CCCCCCC
Q ss_conf 44688832--0016565529972289998-7791124978763886578-75568732003323-64221---3322333
Q 002750 605 FSEFPLPV--EIGQLIHLKYLRLRNSPID-NLPPSIEKLQRLQTLDLSD-TLCGIPTEISKLTE-LRHLI---GNFSGYL 676 (885)
Q Consensus 605 l~~~~lp~--~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~-~~~~lp~~i~~L~~-L~~L~---~~~~~~~ 676 (885)
+. .+|. .++.+++|++|++++|.+. .+| .++.+.+|++|++++ .+..+|..+..+++ |+.|. +.+. ..
T Consensus 317 l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 317 LK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp CS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred CC--CCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCC-CC
T ss_conf 77--66765554257888989690880705166-6478898898989899403033756510236868985298275-44
Q ss_pred CCCCCC--CCCCCCCCCCCCCCCCC-----CC-------CCCCCCEEEEECCCCCCHHHCCCHHHHHCCCCCCEEEEEEC
Q ss_conf 666766--78722720026545569-----84-------45788803760134310000043445420489755784413
Q 002750 677 PIENLT--NLRTLKYVSVESWNRLS-----PD-------KLINLRELHIEDKEWTREKVLFTFNSIAKLKSLQILSIKLS 742 (885)
Q Consensus 677 ~~~~l~--~L~~L~~~~~~~~~~~~-----l~-------~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~ 742 (885)
|. .+. .+..|+.++++.+.+.. +. .+++|+.|++++|.+..... ..+..+++|+.+++..+
T Consensus 393 p~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 393 PN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK----ELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT----HHHHTTCCCSEEECCSS
T ss_pred CH-HHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCH----HHHCCCCCCCEEECCCC
T ss_conf 66-55333457668897748857886524420022011258988889772796686787----88715898898989799
Q ss_pred CCCCCCCCCCC--------CCCCCCCEEEEEEE-CCCCCHHHH-HCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCEEEE
Q ss_conf 77544556667--------89988651798111-598982344-039995279974357999990578408689914842
Q 002750 743 GERSFDLLQPL--------CDCPCLSDLRLRGK-IEKLPEDIH-VILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLS 812 (885)
Q Consensus 743 ~~~~~~~~~~l--------~~~~~L~~L~l~g~-~~~lp~~~~-~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 812 (885)
... .++... ..+++|+.|++++| +..+|..+. ..+++|+.|+|++|.++. ++..+..+++|+.|+|+
T Consensus 468 ~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 468 MLT--EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp CCS--BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred CCC--CCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECC
T ss_conf 788--739788404400122147733898969938816854534458876989898998877-68235308887878898
Q ss_pred C------CCCCCEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCEEECCCCCCCCC------C------CCCCC
Q ss_conf 2------5558817764489975666268654997524986785424441020455658878------1------12688
Q 002750 813 Y------DSYSGKKLFCTAKGFPRLEILQLLVDELEEWQVEEGAMPRLRGLRIPEHLKSRIP------E------RLRSI 874 (885)
Q Consensus 813 ~------n~~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~lp------~------~l~~L 874 (885)
+ |.+.+ .++.....+++|+.|+++.|.++.++.. .+++|+.|++++|+...+. . .+...
T Consensus 545 ~N~~ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~ip~~--~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~ 621 (636)
T 4eco_A 545 NQRDAQGNRTLR-EWPEGITLCPSLTQLQIGSNDIRKVNEK--ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621 (636)
T ss_dssp SCBCTTCCBCCC-CCCTTGGGCSSCCEEECCSSCCCBCCSC--CCTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECC
T ss_pred CCCCCCCCCCCC-CCHHHHHCCCCCCEEECCCCCCCCCCHH--HHCCCCEEECCCCCCCCCCHHHCCHHHHCCCCEEECC
T ss_conf 886656673121-2737785699878898989947705976--8386789987699876336786201122661003437
Q ss_pred CCCCCCCCCC
Q ss_conf 9998888888
Q 002750 875 PPPAEGECEE 884 (885)
Q Consensus 875 ~~L~~~~C~~ 884 (885)
....+.+|+.
T Consensus 622 ~~~~i~~C~~ 631 (636)
T 4eco_A 622 KTQDIRGCDA 631 (636)
T ss_dssp TTSEEESCGG
T ss_pred CCCCCCCCCC
T ss_conf 7543479861
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=196.58 Aligned_cols=289 Identities=18% Similarity=0.189 Sum_probs=165.3
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCC-CCC
Q ss_conf 7631038832352024577764578673257316798615543333455446888320016565529972289998-779
Q 002750 556 NLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSPID-NLP 634 (885)
Q Consensus 556 ~~~lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~vL~L~~~~~~~~~~l~~~~lp~~i~~l~~L~~L~L~~~~i~-~lp 634 (885)
.+.++.|.+.++.... ..+..+..++.|++|++++|. +.+ .+|..++.+++|++|++++|.+. .+|
T Consensus 393 ~~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~N~------l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTG------KIPPTLSNCSELVSLHLSFNY------LSG-TIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp TCCCCEEECCSSEEEE------ECCGGGGGCTTCCEEECCSSE------EES-CCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CCCCCEEECCCCCCCC------CCCHHHHCCCCCCEEECCCCC------CCC-CCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 4776189897784654------248777568987989895884------668-546777449988989897881547189
Q ss_pred CCCCCCCCCCEEECCCC-CC-CCCHHHCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCC
Q ss_conf 11249787638865787-55-687320033236422---13322333666766787227200265455-----6984457
Q 002750 635 PSIEKLQRLQTLDLSDT-LC-GIPTEISKLTELRHL---IGNFSGYLPIENLTNLRTLKYVSVESWNR-----LSPDKLI 704 (885)
Q Consensus 635 ~~i~~L~~L~~L~L~~~-~~-~lp~~i~~L~~L~~L---~~~~~~~~~~~~l~~L~~L~~~~~~~~~~-----~~l~~l~ 704 (885)
..+..+++|++|++++| +. .+|..+..+++|+.| .+.+.+..| ..+..+..|+.+++..+.+ ..+..++
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred HHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCHHHCCCC
T ss_conf 788287773299901995137588788169989989753995189687-6885689999898978943374887770889
Q ss_pred CCCEEEEECCCCCCHHHCCCHHHHHCCCCCCE---------EEEEE----------------CCC---------------
Q ss_conf 88803760134310000043445420489755---------78441----------------377---------------
Q 002750 705 NLRELHIEDKEWTREKVLFTFNSIAKLKSLQI---------LSIKL----------------SGE--------------- 744 (885)
Q Consensus 705 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~---------l~l~~----------------~~~--------------- 744 (885)
+|+.|++++|.+.+..+... .....+.. ..+.. .+.
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp TCCEEECCSSEEESBCCGGG----GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred CCCEEECCCCCCCCCCCHHH----HCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 89989898884688279578----60421223201345421111344432222332221001355632320023211001
Q ss_pred -----CCCCCCCCCCCCCCCCEEEEEEE-C-CCCCHHHHHCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCEEEECCCCC
Q ss_conf -----54455666789988651798111-5-9898234403999527997435799999057840868991484225558
Q 002750 745 -----RSFDLLQPLCDCPCLSDLRLRGK-I-EKLPEDIHVILPNLECLSLEDSNLDDDPMPELEKMSNLVILDLSYDSYS 817 (885)
Q Consensus 745 -----~~~~~~~~l~~~~~L~~L~l~g~-~-~~lp~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~ 817 (885)
.....+..+..+++|+.|++++| + +.+|..++. +++|+.|+|++|.+++.+|..++.+++|+.|+|++|.+.
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHC-CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 1331004627433403356657978588015558778841-415787848688038878967847778998989788023
Q ss_pred CEEEEECCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCEEECCCCC
Q ss_conf 81776448997566626865499752498678542444102045565
Q 002750 818 GKKLFCTAKGFPRLEILQLLVDELEEWQVEEGAMPRLRGLRIPEHLK 864 (885)
Q Consensus 818 ~~~~~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 864 (885)
+. ++.....+++|+.|+++.|+++...+..+.+.++....+.+|+.
T Consensus 694 g~-ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 694 GR-IPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG 739 (768)
T ss_dssp EC-CCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTE
T ss_pred CC-CCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCH
T ss_conf 86-88677578878978796881556089960102489777569832
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=196.07 Aligned_cols=307 Identities=15% Similarity=0.177 Sum_probs=189.7
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCC------CCCCEEEECCC
Q ss_conf 976310388323520245777645786732573167986155433334554468883200165------65529972289
Q 002750 555 NNLLSRSLLHFNYEREYIFQVERDLRWLFTSFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQL------IHLKYLRLRNS 628 (885)
Q Consensus 555 ~~~~lr~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~vL~L~~~~~~~~~~l~~~~lp~~i~~l------~~L~~L~L~~~ 628 (885)
.+++|+.|.+.++.... ..+..|..++.|++|++++|.. +.+..+|..++.+ ++|++|++++|
T Consensus 247 ~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~~-----l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLT------KLPTFLKALPEMQLINVACNRG-----ISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp GCTTCCEEEEECCTTCS------SCCTTTTTCSSCCEEECTTCTT-----SCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred CCCCCCEEEECCCCCCC------CCHHHHHCCCCCCEEECCCCCC-----CCCCCCHHHHHHHHCCCCCCCCCEEECCCC
T ss_conf 46878889804885776------2838883499978897847988-----766533578875430465788888989799
Q ss_pred CCCCCCC--CCCCCCCCCEEECCC-CCC-CCCHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 9987791--124978763886578-755-6873200332364221---33223336667667872-27200265455698
Q 002750 629 PIDNLPP--SIEKLQRLQTLDLSD-TLC-GIPTEISKLTELRHLI---GNFSGYLPIENLTNLRT-LKYVSVESWNRLSP 700 (885)
Q Consensus 629 ~i~~lp~--~i~~L~~L~~L~L~~-~~~-~lp~~i~~L~~L~~L~---~~~~~~~~~~~l~~L~~-L~~~~~~~~~~~~l 700 (885)
.++.+|. .++++.+|++|++++ .+. .+| .+..+++|+.|. +.+. ..+ ..+..+.. |+.++++.+.+..+
T Consensus 316 ~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp-~~l~~l~~~L~~L~Ls~N~l~~l 392 (636)
T 4eco_A 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIP-ANFCGFTEQVENLSFAHNKLKYI 392 (636)
T ss_dssp CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECC-TTSEEECTTCCEEECCSSCCSSC
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCC-HHHHHHCCCCCEEECCCCCCCCC
T ss_conf 37766765554257888989690880705166-6478898898989899403-033-75651023686898529827544
Q ss_pred ----CC--CCCCCEEEEECCCCCCHHHCCCHHHHH-------CCCCCCEEEEEECCCCCCCCCCC-CCCCCCCCEEEEEE
Q ss_conf ----44--578880376013431000004344542-------04897557844137754455666-78998865179811
Q 002750 701 ----DK--LINLRELHIEDKEWTREKVLFTFNSIA-------KLKSLQILSIKLSGERSFDLLQP-LCDCPCLSDLRLRG 766 (885)
Q Consensus 701 ----~~--l~~L~~L~l~~~~~~~~~~~~~~~~l~-------~l~~L~~l~l~~~~~~~~~~~~~-l~~~~~L~~L~l~g 766 (885)
.. +++|+.|++++|.+.+..+ ..+. .+.+|+.+++..+... .++.. +..+++|+.|++++
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDG----KNFDPLDPTPFKGINVSSINLSNNQIS--KFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTT----CSSCTTCSSCCCCCCEEEEECCSSCCC--SCCTHHHHTTCCCSEEECCS
T ss_pred CHHHHHCCCCCCCEEECCCCCCCCCCH----HHHCCCCCCCCCCCCCCEEECCCCCCC--CCCHHHHCCCCCCCEEECCC
T ss_conf 665533345766889774885788652----442002201125898888977279668--67878871589889898979
Q ss_pred E-CCCCCHHHHHCCC-------CCCEEEEECCCCCCCCHHHHH--CCCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEE
Q ss_conf 1-5989823440399-------952799743579999905784--08689914842255588177644899756662686
Q 002750 767 K-IEKLPEDIHVILP-------NLECLSLEDSNLDDDPMPELE--KMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQL 836 (885)
Q Consensus 767 ~-~~~lp~~~~~~l~-------~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L 836 (885)
| +..+|........ +|+.|+|++|.++ .++..+. .+++|+.|+|++|.+.+ ++.....+++|+.|++
T Consensus 467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEEC
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCC--CCHHHHCCCCCCEEEC
T ss_conf 97887397884044001221477338989699388-16854534458876989898998877--6823530888787889
Q ss_pred E------CCCCC-CEEECCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 5------49975-2498678542444102045565887811-26889998888888
Q 002750 837 L------VDELE-EWQVEEGAMPRLRGLRIPEHLKSRIPER-LRSIPPPAEGECEE 884 (885)
Q Consensus 837 ~------~~~l~-~l~~~~~~~~~L~~L~l~~c~~~~lp~~-l~~L~~L~~~~C~~ 884 (885)
+ .|.+. .++.....+++|+.|++++|....+|.. ...|..|.+++|+.
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTTCCEEECCSCTT
T ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCEEECCCCCC
T ss_conf 88866566731212737785699878898989947705976838678998769987
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=195.78 Aligned_cols=284 Identities=14% Similarity=0.158 Sum_probs=131.5
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCC-CCC--CCCCCCCCC-------CCCEEECCC-CCC
Q ss_conf 573167986155433334554468883200165655299722899-987--791124978-------763886578-755
Q 002750 585 SFSLLRVYDAEVVNRFRTGIFSEFPLPVEIGQLIHLKYLRLRNSP-IDN--LPPSIEKLQ-------RLQTLDLSD-TLC 653 (885)
Q Consensus 585 ~~~~L~vL~L~~~~~~~~~~l~~~~lp~~i~~l~~L~~L~L~~~~-i~~--lp~~i~~L~-------~L~~L~L~~-~~~ 653 (885)
.+++|++|+|++|. +.. .+|..++++++|++|++++|. +.. +|..++++. +|++|++++ ++.
T Consensus 489 ~L~~L~~L~Ls~N~------l~~-~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 489 NLKDLTDVELYNCP------NMT-QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp GCTTCCEEEEESCT------TCC-SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCC------CCC-CCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 59997789871898------875-27387737999899989689876566461778752330155688319982289477
Q ss_pred CCCH--HHCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC-CCEEEEECCC--------
Q ss_conf 6873--20033236422---1332233366676678722720026545569----844578-8803760134--------
Q 002750 654 GIPT--EISKLTELRHL---IGNFSGYLPIENLTNLRTLKYVSVESWNRLS----PDKLIN-LRELHIEDKE-------- 715 (885)
Q Consensus 654 ~lp~--~i~~L~~L~~L---~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~----l~~l~~-L~~L~l~~~~-------- 715 (885)
.+|. .+.++++|+.| .+.+. ..| .+..+..|..++++.+.+.. +..+++ |+.|++++|.
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~ 638 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred CCCCHHHHHCCCCCCEEECCCCCCC-CCH--HHCCCCCCEEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCHHH
T ss_conf 6187235515898898989799825-621--2247985007987187125035877525114989998499787476445
Q ss_pred -----------------CCCHHHCCCHHHHH--CCCCCCEEEEEECCCCCCCCCCCC-CCCCCCCEEEEEEE-CCCCCHH
Q ss_conf -----------------31000004344542--048975578441377544556667-89988651798111-5989823
Q 002750 716 -----------------WTREKVLFTFNSIA--KLKSLQILSIKLSGERSFDLLQPL-CDCPCLSDLRLRGK-IEKLPED 774 (885)
Q Consensus 716 -----------------~~~~~~~~~~~~l~--~l~~L~~l~l~~~~~~~~~~~~~l-~~~~~L~~L~l~g~-~~~lp~~ 774 (885)
+.+..+... ..+. .+.+|+.++++.+... .++..+ ..+++|+.|++++| +..+|.+
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~-~~l~~~~~~~L~~L~Ls~N~L~--~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNIS-CSMDDYKGINASTVTLSYNEIQ--KFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCS-SCTTTCCCCCEEEEECCSSCCC--SCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCH-HHHCCCCCCCCCEEECCCCCCC--CCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 22556777889770884788643200-0000135797688983199688--65978871389889998989968854967
Q ss_pred HHHCC-------CCCCEEEEECCCCCCCCHHHHH--CCCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEEEC------C
Q ss_conf 44039-------9952799743579999905784--0868991484225558817764489975666268654------9
Q 002750 775 IHVIL-------PNLECLSLEDSNLDDDPMPELE--KMSNLVILDLSYDSYSGKKLFCTAKGFPRLEILQLLV------D 839 (885)
Q Consensus 775 ~~~~l-------~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L~~------~ 839 (885)
+.... ++|+.|+|++|.++ .++..+. .+++|+.|+|++|.+.+ ++.....+++|+.|+|+. |
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred HHCCCCCCCCCCCCCCEEECCCCCCC-CCHHHHHHCCCCCCCEEEECCCCCCC--CCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 84555334321487158988899786-65277624427986989908997876--1056615999889988799776656
Q ss_pred CCC-CEEECCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 975-2498678542444102045565887811-26889998888888
Q 002750 840 ELE-EWQVEEGAMPRLRGLRIPEHLKSRIPER-LRSIPPPAEGECEE 884 (885)
Q Consensus 840 ~l~-~l~~~~~~~~~L~~L~l~~c~~~~lp~~-l~~L~~L~~~~C~~ 884 (885)
.+. .++.....+++|+.|++++|.+..+|.. .++|..|.+++|+.
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTT
T ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHCCCCCEEECCCCCC
T ss_conf 32444868883699878898879978740876628778899979988
Done!