Your job contains 1 sequence.
>002752
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA
KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL
ILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTI
GPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTP
PAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS
PPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLG
AVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGET
VAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNL
LGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIH
QQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPY
AIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGA
TVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPA
FWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVAN
DEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002752
(885 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2172389 - symbol:AT5G18230 species:3702 "Arabi... 1256 1.1e-207 2
UNIPROTKB|O75175 - symbol:CNOT3 "CCR4-NOT transcription c... 678 2.8e-113 3
UNIPROTKB|F6XXD6 - symbol:CNOT3 "Uncharacterized protein"... 676 4.5e-113 3
UNIPROTKB|E1BCS1 - symbol:CNOT3 "Uncharacterized protein"... 672 4.0e-112 3
UNIPROTKB|E2R344 - symbol:CNOT3 "Uncharacterized protein"... 664 1.7e-111 3
FB|FBgn0033029 - symbol:l(2)NC136 "lethal (2) NC136" spec... 647 2.4e-110 3
MGI|MGI:2385261 - symbol:Cnot3 "CCR4-NOT transcription co... 675 2.1e-109 2
RGD|1304771 - symbol:Cnot3 "CCR4-NOT transcription comple... 670 7.1e-109 2
ZFIN|ZDB-GENE-040927-6 - symbol:cnot3a "CCR4-NOT transcri... 682 1.3e-107 2
ZFIN|ZDB-GENE-030131-5838 - symbol:cnot3b "CCR4-NOT trans... 670 7.8e-92 3
POMBASE|SPAC1B3.05 - symbol:not3 "CCR4-Not complex subuni... 574 3.0e-91 2
ASPGD|ASPL0000074489 - symbol:AN4585 species:162425 "Emer... 523 1.7e-88 2
UNIPROTKB|F1RNH3 - symbol:CNOT3 "Uncharacterized protein"... 674 9.6e-86 3
DICTYBASE|DDB_G0272056 - symbol:DDB_G0272056 "putative CC... 472 2.0e-84 3
WB|WBGene00003826 - symbol:ntl-3 species:6239 "Caenorhabd... 463 4.8e-72 3
UNIPROTKB|G5EFX8 - symbol:ntl-3 "Protein NTL-3, isoform a... 463 4.8e-72 3
CGD|CAL0002492 - symbol:NOT5 species:5476 "Candida albica... 463 9.3e-52 2
UNIPROTKB|Q5A755 - symbol:NOT5 "Potential mRNA deadenylas... 463 9.3e-52 2
SGD|S000006276 - symbol:NOT5 "Component of the CCR4-NOT t... 419 1.2e-51 3
SGD|S000001300 - symbol:NOT3 "Component of the CCR4-NOT t... 443 7.9e-47 3
UNIPROTKB|H7C148 - symbol:CNOT3 "CCR4-NOT transcription c... 375 1.2e-33 1
UNIPROTKB|H0Y5X7 - symbol:CNOT3 "CCR4-NOT transcription c... 340 1.5e-31 2
UNIPROTKB|H7C3F5 - symbol:CNOT3 "CCR4-NOT transcription c... 213 3.1e-16 1
UNIPROTKB|H7C5J4 - symbol:CNOT3 "CCR4-NOT transcription c... 195 2.6e-14 1
CGD|CAL0005191 - symbol:orf19.6075 species:5476 "Candida ... 157 3.0e-10 1
UNIPROTKB|F1MID5 - symbol:CNOT2 "Uncharacterized protein"... 153 5.6e-09 2
UNIPROTKB|F1SH40 - symbol:CNOT2 "Uncharacterized protein"... 154 7.8e-09 2
SGD|S000002324 - symbol:CDC36 "Component of the CCR4-NOT ... 143 9.6e-09 1
MGI|MGI:1919318 - symbol:Cnot2 "CCR4-NOT transcription co... 153 9.9e-09 2
UNIPROTKB|E2QSF5 - symbol:CNOT2 "Uncharacterized protein"... 153 9.9e-09 2
UNIPROTKB|Q9NZN8 - symbol:CNOT2 "CCR4-NOT transcription c... 153 9.9e-09 2
UNIPROTKB|F1LUT7 - symbol:Cnot2 "Protein Cnot2" species:1... 153 1.0e-08 2
UNIPROTKB|H0YHT6 - symbol:CNOT2 "CCR4-NOT transcription c... 142 1.2e-08 1
UNIPROTKB|F1M3V0 - symbol:Cnot2 "Protein Cnot2" species:1... 153 1.2e-08 3
UNIPROTKB|F1LY92 - symbol:Cnot2 "Protein Cnot2" species:1... 153 1.8e-08 3
UNIPROTKB|F8VV52 - symbol:CNOT2 "CCR4-NOT transcription c... 153 3.1e-08 2
UNIPROTKB|E1BCE7 - symbol:CNOT2 "Uncharacterized protein"... 153 3.2e-08 2
ZFIN|ZDB-GENE-070410-70 - symbol:zgc:162316 "zgc:162316" ... 162 3.2e-08 2
UNIPROTKB|Q5ZKI3 - symbol:CNOT2 "Uncharacterized protein"... 153 4.6e-08 2
RGD|1311672 - symbol:Cnot2 "CCR4-NOT transcription comple... 142 9.8e-08 3
UNIPROTKB|Q52JK6 - symbol:VIP2 "Probable NOT transcriptio... 154 4.8e-07 2
DICTYBASE|DDB_G0289701 - symbol:DDB_G0289701 "ezrin/radix... 103 3.3e-06 2
TAIR|locus:505006107 - symbol:NOT2a "Negative on TATA les... 134 7.1e-06 3
FB|FBgn0017550 - symbol:Rga "Regena" species:7227 "Drosop... 109 1.5e-05 2
TAIR|locus:2174259 - symbol:VIP2 "VIRE2 interacting prote... 132 2.2e-05 2
DICTYBASE|DDB_G0284577 - symbol:DDB_G0284577 "putative CC... 122 3.3e-05 2
POMBASE|SPCC4G3.15c - symbol:not2 "CCR4-Not complex subun... 129 3.9e-05 1
DICTYBASE|DDB_G0302588 - symbol:DDB_G0302588 "RanBP2-type... 127 9.7e-05 3
ZFIN|ZDB-GENE-090312-142 - symbol:si:ch211-12d10.5 "si:ch... 104 0.00025 2
UNIPROTKB|E2QV06 - symbol:CGNL1 "Uncharacterized protein"... 129 0.00034 1
WB|WBGene00019273 - symbol:H43E16.1 species:6239 "Caenorh... 128 0.00039 1
DICTYBASE|DDB_G0288067 - symbol:mf12 species:44689 "Dicty... 114 0.00049 3
WB|WBGene00003825 - symbol:ntl-2 species:6239 "Caenorhabd... 120 0.00077 1
UNIPROTKB|Q10923 - symbol:ntl-2 "Protein NTL-2, isoform a... 120 0.00077 1
UNIPROTKB|D4AD67 - symbol:Ktn1 "Protein Ktn1" species:101... 125 0.00088 1
>TAIR|locus:2172389 [details] [associations]
symbol:AT5G18230 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
EMBL:CP002688 GO:GO:0006355 KO:K12580 OMA:ESIYHLP IPI:IPI00939040
RefSeq:NP_001154716.1 UniGene:At.7555 ProteinModelPortal:F4JWJ7
PRIDE:F4JWJ7 EnsemblPlants:AT5G18230.2 GeneID:831941
KEGG:ath:AT5G18230 Uniprot:F4JWJ7
Length = 845
Score = 1256 (447.2 bits), Expect = 1.1e-207, Sum P(2) = 1.1e-207
Identities = 271/393 (68%), Positives = 303/393 (77%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK--VYDTDNANQKEKFEADLKKEIKKLQRY 58
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK VYDTDN NQKEKFEADLKKEIKKLQRY
Sbjct: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY 60
Query: 59 RDQIKTWIQSSEIKDKK-------ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ 111
RDQIKTWIQSSEIKDKK +LVDARKLIE+EMERFKICEKETKTKAFSKEGLGQQ
Sbjct: 61 RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQ 120
Query: 112 PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 171
PKTDPKEKAKSETRDWLNN+VSELESQIDSFEAELEGL+VKKGKTRPPRLTHLETSITRH
Sbjct: 121 PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRH 180
Query: 172 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKV 231
K HI+KLELILRLLDNDELSPEQVNDVKD L+DYVERNQDDF+EFSDVDELY LPLD+V
Sbjct: 181 KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV 240
Query: 232 ESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDS 291
E LEDLVT GP LVKG Q+ + + TH Q E+ EDT+ DS
Sbjct: 241 EGLEDLVTAGP--LVKGTPLSMKSSLAASAS-QVRSISLPTHHQ-----EKTEDTSLPDS 292
Query: 292 NSDVAARTPPAKS-SGVGSTASTPAVGPATPISINVPAQTLSNASNT-SPVLPGSSSVRG 349
++++ +TPP K+ +G+ S STPA G P S+NVPA +SN S T S +P +S+
Sbjct: 293 SAEMVPKTPPPKNGAGLHSAPSTPAGG--RP-SLNVPAGNVSNTSVTLSTSIPTQTSIES 349
Query: 350 VFDNTGPISSSPP--VNLTSSTKEEDVGNFPGR 380
+ + P+++ L S V + P R
Sbjct: 350 M-GSLSPVAAKEEDATTLPSRKPPSSVADTPLR 381
Score = 775 (277.9 bits), Expect = 1.1e-207, Sum P(2) = 1.1e-207
Identities = 156/289 (53%), Positives = 189/289 (65%)
Query: 599 IHQQSSQQTLMSGGQKD-ADVSHLKVXXXXXXXXXXXXXXXXXXXXXGLGKNLIHEDDLK 657
+ QQS+ + G Q ADV H++ K + EDD K
Sbjct: 570 LQQQSNAMSQQLGQQPSVADVDHVR------NDDQSQQNLPDDSASIAASKAIQSEDDSK 623
Query: 658 APYAIDSSTGVSASLTEPAQVVRDTDXXXXXXXXXXXXXXXXXVIGRRSVSDLGAIGDSL 717
+ D+ +G+ + + +P QV D VIGRRS S+LGAIGD
Sbjct: 624 VLF--DTPSGMPSYMLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGAIGDP- 680
Query: 718 SGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS 777
+ V G MHDQM+N+QMLE+AFYK PQP DSER R Y PR+PA+TP ++PQ QAPI++
Sbjct: 681 --SAV--GPMHDQMHNLQMLEAAFYKRPQPSDSERPRPYSPRNPAITPQTFPQTQAPIIN 736
Query: 778 NPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPK 837
NP WERL D+YGTDTLFFAFYYQQN+YQQYLAAKELKKQSWRYHRK+NTWFQRH+EPK
Sbjct: 737 NPLLWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRHKEPK 796
Query: 838 VANDEFEQGTYVYFDFHIANDDLQHG-WCQRIKTEFTFEYNYLEDELIV 885
+A DE+EQG YVYFDF D+ Q G WCQRIK EFTFEY+YLEDEL+V
Sbjct: 797 IATDEYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLEDELVV 845
Score = 523 (189.2 bits), Expect = 4.9e-181, Sum P(2) = 4.9e-181
Identities = 148/354 (41%), Positives = 184/354 (51%)
Query: 368 STKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSD 427
+ KEED P R+ S+ D + G G + +P+NG+ + ++
Sbjct: 357 AAKEEDATTLPSRKPPSSVADTPLRGIG-RVGIPNQPQPSQPPSPIPANGSRISATSAAE 415
Query: 428 VAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRV 487
VAKRNI+G E VQ L SPLS +M+L AKGNDGT S DSN G+ A GR
Sbjct: 416 VAKRNIMGVESN------VQPLTSPLS-KMVLPPTAKGNDGTAS-DSN-PGDVAASIGRA 466
Query: 488 FTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPL 545
F+PS+ G QWR G+ FQ+QNE RGRTEIAPDQREKF GH NLLG+P
Sbjct: 467 FSPSIVSGSQWRPGSPFQSQNET--VRGRTEIAPDQREKFLQRLQQVQQ-GHGNLLGIPS 523
Query: 546 --GGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQ 601
GGN KQFSSQQ NPLLQQ SSIS LG+GVQAPG N ++SASLQQQ N + Q
Sbjct: 524 LSGGNEKQFSSQQQNPLLQQ----SSSISPHGSLGIGVQAPGFNVMSSASLQQQSNAMSQ 579
Query: 602 QSSQQTLMSGGQKDADVSHLKVXXXXXXXXXXXXXXXXXXXXXGLGKNLIHEDDLKAPYA 661
Q QQ + ADV H++ K + EDD K +
Sbjct: 580 QLGQQPSV------ADVDHVR------NDDQSQQNLPDDSASIAASKAIQSEDDSKVLF- 626
Query: 662 IDSSTGVSASLTEPAQVVRDTDXXXXXXXXXXXXXXXXXVIGRRSVSDLGAIGD 715
D+ +G+ + + +P QV D VIGRRS S+LGAIGD
Sbjct: 627 -DTPSGMPSYMLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGAIGD 679
Score = 70 (29.7 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 34/136 (25%), Positives = 53/136 (38%)
Query: 267 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSS-----GVGSTASTPAVGPATP 321
+T I T + S+ A ++ + + +R PP+ + G+G P+ P
Sbjct: 338 STSIPTQTSIESMGSLSPVAAKEEDATTLPSRKPPSSVADTPLRGIGRVGIPNQPQPSQP 397
Query: 322 ISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS------PPV-----NLTSSTK 370
S +PA S S TS ++ GV N P++S PP S +
Sbjct: 398 PS-PIPANG-SRISATSAAEVAKRNIMGVESNVQPLTSPLSKMVLPPTAKGNDGTASDSN 455
Query: 371 EEDVGNFPGRRSSPSL 386
DV GR SPS+
Sbjct: 456 PGDVAASIGRAFSPSI 471
>UNIPROTKB|O75175 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:2000036 "regulation of stem cell maintenance" evidence=IMP]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 GO:GO:0000932
GO:GO:0000289 EMBL:AF180474 EMBL:AB014591 EMBL:AL133647
EMBL:BC016474 IPI:IPI00005015 IPI:IPI00186188 IPI:IPI00478453
PIR:T43456 RefSeq:NP_055331.1 UniGene:Hs.343571
ProteinModelPortal:O75175 DIP:DIP-40297N IntAct:O75175
MINT:MINT-1439009 STRING:O75175 PhosphoSite:O75175 PaxDb:O75175
PRIDE:O75175 Ensembl:ENST00000221232 Ensembl:ENST00000358389
Ensembl:ENST00000406403 Ensembl:ENST00000570333
Ensembl:ENST00000570863 Ensembl:ENST00000570970
Ensembl:ENST00000570997 Ensembl:ENST00000571055
Ensembl:ENST00000571119 Ensembl:ENST00000572058
Ensembl:ENST00000572589 Ensembl:ENST00000572598
Ensembl:ENST00000572852 Ensembl:ENST00000573388
Ensembl:ENST00000573528 Ensembl:ENST00000573769
Ensembl:ENST00000574556 Ensembl:ENST00000574815
Ensembl:ENST00000574965 Ensembl:ENST00000575585
Ensembl:ENST00000576314 Ensembl:ENST00000576558
Ensembl:ENST00000576765 Ensembl:ENST00000577005 GeneID:4849
KEGG:hsa:4849 UCSC:uc002qdj.2 CTD:4849 GeneCards:GC19P054641
HGNC:HGNC:7879 HPA:HPA006408 MIM:604910 neXtProt:NX_O75175
PharmGKB:PA26674 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 InParanoid:O75175 KO:K12580 OMA:IFYYLEP
OrthoDB:EOG41JZDJ PhylomeDB:O75175 GenomeRNAi:4849 NextBio:18674
ArrayExpress:O75175 Bgee:O75175 CleanEx:HS_CNOT3
Genevestigator:O75175 GermOnline:ENSG00000088038 Uniprot:O75175
Length = 753
Score = 678 (243.7 bits), Expect = 2.8e-113, Sum P(3) = 2.8e-113
Identities = 180/459 (39%), Positives = 239/459 (52%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +K
Sbjct: 61 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE 120
Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSITRHKAHI 175
K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I +H+ H+
Sbjct: 121 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV 180
Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESL 234
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ +
Sbjct: 181 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIP-- 235
Query: 235 EDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNSD 294
+ LV PP + + + T+ E ED + ++D
Sbjct: 236 QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKKRGRSTD 293
Query: 295 VAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGV 350
PAK S V S +PAV P P S PA ++A +T+P G +
Sbjct: 294 SEVSQSPAKNGSKPVHSNQHPQSPAVPPTYP-SGPPPA---ASALSTTPGNNGVPAPAAP 349
Query: 351 FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD-----VRVMGRGGXXXXXXXXX 405
GP +S P + + + P S PS T V+ G GG
Sbjct: 350 PSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSS 409
Query: 406 XXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSG 444
++A G S V + AE L SSG
Sbjct: 410 SSSNSSAGGGAGKQNGATSYSSVVADS--PAEVALSSSG 446
Score = 426 (155.0 bits), Expect = 2.8e-113, Sum P(3) = 2.8e-113
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 729 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 788
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 789 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 848
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 849 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749
Score = 72 (30.4 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 29/85 (34%), Positives = 39/85 (45%)
Query: 291 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 343
S S V A +P A SS G+ AS+ A+GP + N P T S +P V PG
Sbjct: 428 SYSSVVADSPAEVALSSSGGNNASSQALGPPSGPH-NPPPSTSKEPSAAAPTGAGGVAPG 486
Query: 344 SSSVRGVFDNTGPISSSPPVNLTSS 368
S + G P+ +PP + T S
Sbjct: 487 SGNNSGGPSLLVPLPVNPPSSPTPS 511
Score = 48 (22.0 bits), Expect = 2.8e-113, Sum P(3) = 2.8e-113
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 546 GGNKQFSSQQNPLLQQFN---SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQ 602
GGN S P N S SA A G G APG + + P P++
Sbjct: 446 GGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPP 505
Query: 603 SS 604
SS
Sbjct: 506 SS 507
Score = 44 (20.5 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 23/98 (23%), Positives = 33/98 (33%)
Query: 267 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINV 326
+ V + +V G + +SQ PP +S S A+ G P S N
Sbjct: 431 SVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNN 490
Query: 327 PAQTLSNASNTSPVLPGSSSVRGVFDN--TGPISSSPP 362
+ PV P SS D G + + PP
Sbjct: 491 SGGP--SLLVPLPVNPPSSPTPSFSDAKAAGALLNGPP 526
Score = 37 (18.1 bits), Expect = 4.0e-112, Sum P(3) = 4.0e-112
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 542 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 582
G L G QFS+ + S S++ +A + G++ P
Sbjct: 519 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 559
>UNIPROTKB|F6XXD6 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 CTD:4849 KO:K12580 GeneTree:ENSGT00390000014743
OMA:ESIYHLP EMBL:AAEX03000741 Ensembl:ENSCAFT00000004262
RefSeq:XP_541428.3 GeneID:484312 KEGG:cfa:484312 Uniprot:F6XXD6
Length = 753
Score = 676 (243.0 bits), Expect = 4.5e-113, Sum P(3) = 4.5e-113
Identities = 175/466 (37%), Positives = 236/466 (50%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +K
Sbjct: 61 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE 120
Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSITRHKAHI 175
K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I +H+ H+
Sbjct: 121 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV 180
Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESL 234
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ +
Sbjct: 181 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIP-- 235
Query: 235 EDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNSD 294
+ LV PP + + + T+ E ED + ++D
Sbjct: 236 QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKKRGRSTD 293
Query: 295 VAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNT 354
PAK+ ++ PA P S ++A +T+P G+S+
Sbjct: 294 SEVSQSPAKNGSKPVHSNQHPQSPAVPPSYPPGPPPATSALSTTPGNNGASTPAAPTSAL 353
Query: 355 GPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR---VMGRGGXXXXXXXXXXXXXAT 411
GP +S P + + + P S S T R V GG +
Sbjct: 354 GPKASPAPSHSSGTPAPYAQAVAPPAPSGSSTTQPRPPSVQPGGGGGSGGGGSGGSGSSN 413
Query: 412 AVPSNG---NLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLS 454
+ G GA S VA A G SG + P S
Sbjct: 414 SSGGGGAGKQNGATSYSSVVADSPAEVALSSSGGSGASSQALGPPS 459
Score = 426 (155.0 bits), Expect = 4.5e-113, Sum P(3) = 4.5e-113
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 729 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 788
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 789 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 848
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 849 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749
Score = 76 (31.8 bits), Expect = 7.0e-40, Sum P(3) = 7.0e-40
Identities = 31/88 (35%), Positives = 40/88 (45%)
Query: 291 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 343
S S V A +P A SS GS AS+ A+GP + N P T S +P V PG
Sbjct: 428 SYSSVVADSPAEVALSSSGGSGASSQALGPPSGPH-NPPPSTSKEPSAAAPAGAGGVAPG 486
Query: 344 SSSVRGVFDNTGPISSSPPVNLTSSTKE 371
S + G P+ +PP + T S E
Sbjct: 487 SGNNTGGPSLLVPLPVNPPSSPTPSFSE 514
Score = 48 (22.0 bits), Expect = 4.5e-113, Sum P(3) = 4.5e-113
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 552 SSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSS 604
S NP S+ S +A AG G GV APG + T P P++ SS
Sbjct: 459 SGPHNP--PPSTSKEPSAAAPAGAG-GV-APGSGNNTGGPSLLVPLPVNPPSS 507
Score = 37 (18.1 bits), Expect = 6.4e-112, Sum P(3) = 6.4e-112
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 542 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 582
G L G QFS+ + S S++ +A + G++ P
Sbjct: 519 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 559
>UNIPROTKB|E1BCS1 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:DAAA02047818
IPI:IPI00685943 RefSeq:XP_002695478.1 Ensembl:ENSBTAT00000019836
GeneID:527305 KEGG:bta:527305 NextBio:20874556 Uniprot:E1BCS1
Length = 744
Score = 672 (241.6 bits), Expect = 4.0e-112, Sum P(3) = 4.0e-112
Identities = 160/372 (43%), Positives = 212/372 (56%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +K
Sbjct: 61 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE 120
Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSITRHKAHI 175
K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I +H+ H+
Sbjct: 121 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV 180
Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESL 234
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ +
Sbjct: 181 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIP-- 235
Query: 235 EDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNSD 294
+ LV PP + + + T+ E ED + ++D
Sbjct: 236 QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKKRGRSTD 293
Query: 295 VAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNA--SNTSPVLPGSSSVR 348
PAK S V S+ +PAV P+ P A LS SN +P +S
Sbjct: 294 SEVSQSPAKNGSKPVHSSQHPQSPAVPPSYPPGPPPAASALSATPGSNGAPAAAAPASAL 353
Query: 349 GVFDNTGPISSS 360
G + P S+
Sbjct: 354 GAKASPAPSHSA 365
Score = 426 (155.0 bits), Expect = 4.0e-112, Sum P(3) = 4.0e-112
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 729 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 788
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 601 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 658
Query: 789 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 848
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 659 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 715
Query: 849 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+YFD+ W QR K FTFEY YLED
Sbjct: 716 IYFDYE--------KWGQRKKEGFTFEYRYLED 740
Score = 79 (32.9 bits), Expect = 2.9e-40, Sum P(3) = 2.9e-40
Identities = 31/88 (35%), Positives = 40/88 (45%)
Query: 291 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPV-----LPG 343
S S V A +P A SS GS+ + A+GP P N P T S T+PV PG
Sbjct: 419 SYSSVVADSPAEAALSSTGGSSTGSQALGPP-PGPHNPPPSTAKEPSATAPVGAGGVAPG 477
Query: 344 SSSVRGVFDNTGPISSSPPVNLTSSTKE 371
S + G P+ +PP + T S E
Sbjct: 478 SGNNAGGPSLLVPLPVNPPSSPTPSFSE 505
Score = 44 (20.5 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 758 PRHPAVTPPSYPQVQAP 774
P H A TP Y Q AP
Sbjct: 361 PSHSAGTPAPYAQAVAP 377
Score = 43 (20.2 bits), Expect = 4.0e-112, Sum P(3) = 4.0e-112
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 570 SAQAGLGLGVQAPGM-NSVTSASLQQQPNPIHQQSS 604
SA A +G G APG N+ SL P P++ SS
Sbjct: 464 SATAPVGAGGVAPGSGNNAGGPSLLV-PLPVNPPSS 498
Score = 37 (18.1 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 542 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 582
G L G QFS+ + S S++ +A + G++ P
Sbjct: 510 GSLLNGPPQFSAAPEIKAPEPLSSLKSMAERAAISSGIEDP 550
>UNIPROTKB|E2R344 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 Ensembl:ENSCAFT00000004262 Uniprot:E2R344
Length = 710
Score = 664 (238.8 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
Identities = 153/357 (42%), Positives = 208/357 (58%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +K
Sbjct: 61 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE 120
Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSITRHKAHI 175
K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I +H+ H+
Sbjct: 121 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV 180
Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESL 234
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ +
Sbjct: 181 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIP-- 235
Query: 235 EDLVTIGPPGL--VKGXXXXXXXXXXXXXXXQMP---ATVISTHQQVTSVQEQGEDTASQ 289
+ LV PP ++ P + T + +++G T S+
Sbjct: 236 QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSE 295
Query: 290 DSNSDVAARTPPAKSSG-VGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSS 345
S S + P S+ S A P+ P P + + + T N ++P P S+
Sbjct: 296 VSQSPAKNGSKPVHSNQHPQSPALPPSYPPGPPPATSALSTTPGNNGASTPAAPTSA 352
Score = 412 (150.1 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
Identities = 82/153 (53%), Positives = 100/153 (65%)
Query: 729 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 788
+Q+Y M E+A++ +P P DSER R++ PR+P TPP + Q+ P F++RLS
Sbjct: 568 EQLYQQAMEEAAWHHMPHPSDSERIRTF-PRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 624
Query: 789 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 848
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 625 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 681
Query: 849 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+YFD+ W QR K FTFEY YLED
Sbjct: 682 IYFDYE--------KWGQRKKEGFTFEYRYLED 706
Score = 74 (31.1 bits), Expect = 2.6e-38, Sum P(3) = 2.6e-38
Identities = 30/86 (34%), Positives = 39/86 (45%)
Query: 293 SDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPGSS 345
S V A +P A SS GS AS+ A+GP + N P T S +P V PGS
Sbjct: 388 SSVVADSPAEVALSSSGGSGASSQALGPPSGPH-NPPPSTSKEPSAAAPAGAGGVAPGSG 446
Query: 346 SVRGVFDNTGPISSSPPVNLTSSTKE 371
+ G P+ +PP + T S E
Sbjct: 447 NNTGGPSLLVPLPVNPPSSPTPSFSE 472
Score = 59 (25.8 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
Identities = 40/146 (27%), Positives = 52/146 (35%)
Query: 465 GNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFR------GRTEIA 518
GN+G S A T A+A R P G RT + G F G + +
Sbjct: 339 GNNGA----STPAAPTSALANRTAPPVSG---RTAGGWGGLGLAGSFHSLFPPPGYSSVV 391
Query: 519 PDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLG 578
D + S LG P G + NP S+ S +A AG G G
Sbjct: 392 ADSPAEVALSSSGGSGAS-SQALGPPSGPH-------NP--PPSTSKEPSAAAPAGAG-G 440
Query: 579 VQAPGMNSVTSASLQQQPNPIHQQSS 604
V APG + T P P++ SS
Sbjct: 441 V-APGSGNNTGGPSLLVPLPVNPPSS 465
Score = 43 (20.2 bits), Expect = 4.4e-35, Sum P(3) = 4.4e-35
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 300 PPAKSSGVGSTASTPAV-GPATPISINVPAQTLSNASNTSPVLPGSSS 346
PP + ++TP G +TP + P L+N T+P + G ++
Sbjct: 324 PPGPPPATSALSTTPGNNGASTPAA---PTSALAN--RTAPPVSGRTA 366
Score = 37 (18.1 bits), Expect = 3.5e-109, Sum P(3) = 3.5e-109
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 542 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 582
G L G QFS+ + S S++ +A + G++ P
Sbjct: 477 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 517
>FB|FBgn0033029 [details] [associations]
symbol:l(2)NC136 "lethal (2) NC136" species:7227 "Drosophila
melanogaster" [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 EMBL:AE013599
GO:GO:0005634 GO:GO:0005737 GO:GO:0022008 GO:GO:0006355
GO:GO:0030014 GO:GO:0000289 eggNOG:COG5665 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AY069428
EMBL:BT083390 RefSeq:NP_610176.1 UniGene:Dm.2133 IntAct:Q7K126
STRING:Q7K126 EnsemblMetazoa:FBtr0086062 EnsemblMetazoa:FBtr0331970
GeneID:35501 KEGG:dme:Dmel_CG8426 UCSC:CG8426-RA
FlyBase:FBgn0033029 InParanoid:Q7K126 OrthoDB:EOG4NVX23
ChiTaRS:l(2)NC136 GenomeRNAi:35501 NextBio:793729 Uniprot:Q7K126
Length = 844
Score = 647 (232.8 bits), Expect = 2.4e-110, Sum P(3) = 2.4e-110
Identities = 155/344 (45%), Positives = 208/344 (60%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQK-----EKFEADLKKEIKKL 55
M A+RKLQGEIDR LKKV EGV+ F+ IW KV++ N NQK EK+EADLKKEIKKL
Sbjct: 1 MAATRKLQGEIDRCLKKVAEGVETFEDIWKKVHNATNTNQKQKHLQEKYEADLKKEIKKL 60
Query: 56 QRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTD 115
QR RDQIK+WI S+EIKDK +L++ R+LIE +MERFK+ E+ETKTKA+SKEGLG K D
Sbjct: 61 QRLRDQIKSWIASAEIKDKSSLLENRRLIETQMERFKVVERETKTKAYSKEGLGAAQKMD 120
Query: 116 PKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKT----RPPRLTHLETSITRH 171
P ++ K + R+WL + +S L+ QID +E+E+E L K K + R+ L + RH
Sbjct: 121 PAQRIKDDARNWLTSSISSLQIQIDQYESEIESLLAGKKKRLDRDKQERMDDLRGKLDRH 180
Query: 172 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDK 230
K HI KLE +LRLLDND + EQVN +KD +E Y++ +Q+ DFEE + + ++ LD+
Sbjct: 181 KFHITKLETLLRLLDNDGVEAEQVNKIKDDVEYYIDSSQEPDFEENEFIYD--DIIGLDE 238
Query: 231 VESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQD 290
VE L T + Q P TV QQ+ + QG AS
Sbjct: 239 VE-LSGTATTDSNNSNE-TSGSPSSVTSGGSPSQSPVTV----QQILNTSSQG--AASSG 290
Query: 291 SNSDVAA----RTPPAKSSG--VGSTASTPAVGPATPISINVPA 328
S++ AA + A+S+G VG + T A + S + PA
Sbjct: 291 SSAASAALFQQQLTAAQSNGNNVGYASDTSAASSSATTSTD-PA 333
Score = 440 (159.9 bits), Expect = 2.4e-110, Sum P(3) = 2.4e-110
Identities = 84/153 (54%), Positives = 104/153 (67%)
Query: 730 QMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDS 789
QM QM+E+A+Y LPQP D+E+ ++Y R P +TP YPQ Q PI F++RLS
Sbjct: 703 QM-QFQMMEAAYYHLPQPMDTEKLQTYFHRAPVLTPSHYPQAQMPIYDTVEFYQRLS--- 758
Query: 790 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYV 849
T+TLFF FYY + + QYLAAK LKKQSWR+H KY WFQRHEEPK+ ND++EQGTY+
Sbjct: 759 --TETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKIINDDYEQGTYI 816
Query: 850 YFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 882
YFD+ W QR K FTFEY YLED+
Sbjct: 817 YFDYE--------KWSQRKKEGFTFEYKYLEDK 841
Score = 69 (29.3 bits), Expect = 2.8e-40, Sum P(3) = 2.8e-40
Identities = 90/415 (21%), Positives = 160/415 (38%)
Query: 33 YDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKAL---VDARKLIEREME 89
Y+ D + +K + L+ +IK + IK +SS +++++ + ++ K++ERE +
Sbjct: 49 YEADLKKEIKKLQR-LRDQIKSWIASAE-IKD--KSSLLENRRLIETQMERFKVVERETK 104
Query: 90 RFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEA----- 144
K KE A K Q+ K D + S L + + ES+I+S A
Sbjct: 105 T-KAYSKEGLGAA-QKMDPAQRIKDDARNWLTSSISS-LQIQIDQYESEIESLLAGKKKR 161
Query: 145 ----ELEGLTVKKGKTRPPR--LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDV 198
+ E + +GK + +T LET + ++ E + ++ D+ E + +
Sbjct: 162 LDRDKQERMDDLRGKLDRHKFHITKLETLLRLLDNDGVEAEQVNKIKDDVEYYIDSSQE- 220
Query: 199 KDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVK--GXXXXXXXX 256
D+ E N+ +++ +DE+ L +S T G P V G
Sbjct: 221 ----PDF-EENEFIYDDIIGLDEV-ELSGTATTDSNNSNETSGSPSSVTSGGSPSQSPVT 274
Query: 257 XXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNSDV--AARTPPAKSSGVGST---A 311
S ++ Q + TA+Q + ++V A+ T A SS ST
Sbjct: 275 VQQILNTSSQGAASSGSSAASAALFQQQLTAAQSNGNNVGYASDTSAASSSATTSTDPAG 334
Query: 312 STPAVGPATPISINVPAQTLSNASNTSPV---LPGSSSVRGVFDNTGPISSSPPVN-LTS 367
T AV ++ + SNA P L + VR P+SS VN + S
Sbjct: 335 GTVAVNCVGGLADKRNKSSESNALKLKPQPHQLIKPTPVRATAKL--PLSSDTQVNKIVS 392
Query: 368 STKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAV 422
ST ++ P S + + ++ G A++ + GN AV
Sbjct: 393 STPSKNQQQLPTAASIVATSAMQSQSSIGSCSSTGGTGASQSASSGNNPGNNPAV 447
Score = 63 (27.2 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 46/215 (21%), Positives = 83/215 (38%)
Query: 286 TASQDSN-SDVAARTPPAKSSGVGSTASTPA-VGPATPISINVPAQTLSNASNTSPVLPG 343
TA+ DSN S+ + +P + +SG GS + +P V S A + S+A++ +
Sbjct: 244 TATTDSNNSNETSGSPSSVTSG-GSPSQSPVTVQQILNTSSQGAASSGSSAASAALFQQQ 302
Query: 344 SSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR-VMGRGGXXXXXX 402
++ + +N G S + + +++T + G L D R
Sbjct: 303 LTAAQSNGNNVGYASDTSAASSSATTSTDPAGGTVAVNCVGGLADKRNKSSESNALKLKP 362
Query: 403 XXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGA-----EERLGSSGMVQSLVSPLSNRM 457
T V + L PL SD I+ + +++L ++ + + + S
Sbjct: 363 QPHQLIKPTPVRATAKL---PLSSDTQVNKIVSSTPSKNQQQLPTAASIVATSAMQSQSS 419
Query: 458 ILSQAAKGNDGTGSIDS--NNAGETVAMAGRVFTP 490
I S ++ G G S NN G A+ TP
Sbjct: 420 IGSCSSTGGTGASQSASSGNNPGNNPAVQPNAPTP 454
Score = 51 (23.0 bits), Expect = 2.1e-38, Sum P(3) = 2.1e-38
Identities = 18/82 (21%), Positives = 33/82 (40%)
Query: 277 TSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPIS-INVPAQTLSNAS 335
T + + +N V P SG+ + A++ V AT +S NV Q++ +
Sbjct: 429 TGASQSASSGNNPGNNPAVQPNAPTPGQSGIAAAAASTNVVSATIVSSANVQGQSVIQPT 488
Query: 336 NTSPVLPGSSSVRGVFDNTGPI 357
T + + +N GP+
Sbjct: 489 PTIAFAAVAKHNTSLLEN-GPV 509
Score = 49 (22.3 bits), Expect = 2.1e-38, Sum P(3) = 2.1e-38
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 271 STHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 325
+ QQ+TS Q+Q Q N+ +AA T + GS A PIS N
Sbjct: 618 TNQQQLTSQQQQ------QLQNNSLAATTGSNNGTSTGSGLMNVANATGQPISGN 666
Score = 44 (20.5 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 468 GTGSIDSNNAGET 480
GT + DSNN+ ET
Sbjct: 243 GTATTDSNNSNET 255
Score = 39 (18.8 bits), Expect = 2.1e-38, Sum P(3) = 2.1e-38
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 26 DSIWNKVYDTDNANQKEKFEADLKK-EIKK--LQRYRDQIKT 64
D+I D ++ NQ++ DL++ + +K LQ + + T
Sbjct: 577 DAINRSAIDPNSLNQQQTSSIDLRQPQSQKSLLQHFNSETNT 618
Score = 37 (18.1 bits), Expect = 2.4e-110, Sum P(3) = 2.4e-110
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 549 KQFSSQQNPLLQQFNSQGSSISAQ 572
+Q SQ++ LLQ FNS+ ++ Q
Sbjct: 600 RQPQSQKS-LLQHFNSETNTNQQQ 622
>MGI|MGI:2385261 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10090 "Mus musculus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:2000036 "regulation of stem cell
maintenance" evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
MGI:MGI:2385261 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0000932 CTD:4849 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 KO:K12580 OrthoDB:EOG41JZDJ EMBL:BC030332
EMBL:BC053437 EMBL:BC141041 IPI:IPI00169667 RefSeq:NP_666288.1
UniGene:Mm.358731 ProteinModelPortal:Q8K0V4 DIP:DIP-46844N
IntAct:Q8K0V4 STRING:Q8K0V4 PhosphoSite:Q8K0V4 PaxDb:Q8K0V4
PRIDE:Q8K0V4 Ensembl:ENSMUST00000038913 GeneID:232791
KEGG:mmu:232791 UCSC:uc009evl.2 GeneTree:ENSGT00390000014743
InParanoid:B2RUA7 OMA:ESIYHLP NextBio:381230 Bgee:Q8K0V4
CleanEx:MM_CNOT3 Genevestigator:Q8K0V4
GermOnline:ENSMUSG00000035632 Uniprot:Q8K0V4
Length = 751
Score = 675 (242.7 bits), Expect = 2.1e-109, Sum P(2) = 2.1e-109
Identities = 186/503 (36%), Positives = 250/503 (49%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
QIKTW+ S+EIKDK+ L++ RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +K
Sbjct: 61 QIKTWVASNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE 120
Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSITRHKAHI 175
K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I +H+ H+
Sbjct: 121 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV 180
Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESL 234
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ +
Sbjct: 181 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIP-- 235
Query: 235 EDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNSD 294
+ LV PP + + + T+ E ED + ++D
Sbjct: 236 QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKKRGRSTD 293
Query: 295 VAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGV 350
PAK S V S +PAV P P P T S S+T P G+S+
Sbjct: 294 SEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSG---PPPTTSALSST-PGNNGASTPAAP 349
Query: 351 FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGR-------GGXXXXXXX 403
GP +S P + + + P S PS R GG
Sbjct: 350 TSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSN 409
Query: 404 XXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSL--------VSPLSN 455
A NG +V+D L + GSS Q+L +P ++
Sbjct: 410 SNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSSG--GSSASSQALGPTSGPHNPAPSTS 467
Query: 456 RMILSQAAKGNDGTGSIDSNNAG 478
+ + A G S NN+G
Sbjct: 468 KESSTAAPSGAGNVASGSGNNSG 490
Score = 426 (155.0 bits), Expect = 2.1e-109, Sum P(2) = 2.1e-109
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 729 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 788
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 789 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 848
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 849 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747
Score = 192 (72.6 bits), Expect = 2.4e-52, Sum P(2) = 2.4e-52
Identities = 133/620 (21%), Positives = 232/620 (37%)
Query: 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKT-WIQSS 69
+ +V + V++ D++ + N + + ++KK + + + + + I+
Sbjct: 15 LKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDK 74
Query: 70 -EIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAK-----SE 123
++ + + L++ + + +ER E +TK + GL Q+ KEK + +
Sbjct: 75 RQLIENRKLIETQMERFKVVER----ETKTKAYSKEGLGLAQKVDPAQKEKEEVGQWLTN 130
Query: 124 TRDWLNNLVSELESQIDSFEAELEGLTVKKG-KTRPPRLTHLETSITRHKAHIMKLELIL 182
T D LN V + ES+++S + KKG K + R+ L+ I +H+ H+ LE IL
Sbjct: 131 TIDTLNMQVDQFESEVESLSVQTRK---KKGDKDKQDRIEGLKRHIEKHRYHVRMLETIL 187
Query: 183 RLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKV-ESLEDLVTI 240
R+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ + ++L + T
Sbjct: 188 RMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIPQAL--VATS 242
Query: 241 GPP-GLVKGXXXXXXXXXXXXXXXQMP---ATVISTHQQVTSVQEQGEDTASQDSNSDVA 296
P ++ P + T + +++G T S+ S S
Sbjct: 243 PPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAK 302
Query: 297 ARTPPAKSSGVGSTASTPAVGPA-TPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTG 355
+ P S+ + + P P+ P + + + T N ++P P +S G +
Sbjct: 303 NGSKPVHSNQHPQSPAVPPTYPSGPPPTTSALSSTPGNNGASTPAAP--TSALGPKASPA 360
Query: 356 PI-SSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVP 414
P +S P + + + P GG A
Sbjct: 361 PSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSNSNSGTGGGAGK 420
Query: 415 SNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSL--------VSPLSNRMILSQAAKGN 466
NG +V+D L + GSS Q+L +P +++ + A G
Sbjct: 421 QNGATSYSSVVADSPAEVTLSSSG--GSSASSQALGPTSGPHNPAPSTSKESSTAAPSGA 478
Query: 467 DGTGSIDSNNAGETVAMAGRVF------TPSMGMQWRTGNSFQNQNEPGQFRGRTEI-AP 519
S NN+G + TPS G N P QF EI AP
Sbjct: 479 GNVASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTLL---NGPPQFSTTPEIKAP 535
Query: 520 DQREKFXXXXXXXXXXG--HSNLLGMPLGGNKQFSSQQN--PLLQQFNSQGSSISAQAGL 575
+ + + L S + P Q Q S ++ L
Sbjct: 536 EPLSSLKSMAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQPPLQLSEVNIP--L 593
Query: 576 GLGVQAPGMNSVTSASLQQQ 595
LGV G S+T L QQ
Sbjct: 594 SLGVCPLGPVSLTKEQLYQQ 613
>RGD|1304771 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
RGD:1304771 GO:GO:0005634 GO:GO:0006355 GO:GO:0000932 CTD:4849
KO:K12580 OrthoDB:EOG41JZDJ OMA:ESIYHLP EMBL:AC103574 EMBL:AC126217
IPI:IPI00192709 RefSeq:NP_001100941.2 UniGene:Rn.212216
Ensembl:ENSRNOT00000064411 GeneID:308311 KEGG:rno:308311
UCSC:RGD:1304771 NextBio:658574 ArrayExpress:D3ZXE8 Uniprot:D3ZXE8
Length = 751
Score = 670 (240.9 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
Identities = 187/504 (37%), Positives = 253/504 (50%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
QIKTW+ S+EIKDK+ L++ RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +K
Sbjct: 61 QIKTWVASNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE 120
Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSITRHKAHI 175
K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I +H+ H+
Sbjct: 121 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV 180
Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESL 234
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ +
Sbjct: 181 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIP-- 235
Query: 235 EDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNSD 294
+ LV PP + + + T+ E ED + ++D
Sbjct: 236 QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKKRGRSTD 293
Query: 295 VAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGV 350
PAK S V S +PAV P P S PA ++A +++P G+S+
Sbjct: 294 SEVSQSPAKNGSKPVHSNQHPQSPAVPPTYP-SGPPPA---TSALSSTPGNNGASTPAAP 349
Query: 351 FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGR-------GGXXXXXXX 403
GP +S P + + + P S PS R GG
Sbjct: 350 PSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSN 409
Query: 404 XXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSN------RM 457
A NG +V+D L + GSS Q+L P S
Sbjct: 410 SNSGTGGGAGKQNGATSYSSVVADSPAEVALSSSG--GSSASSQAL-GPTSGPHNPAPST 466
Query: 458 ILSQAAKGNDGTGSIDS---NNAG 478
+ + G GS+ S NN+G
Sbjct: 467 LKESSTAAPSGAGSVASGSGNNSG 490
Score = 426 (155.0 bits), Expect = 7.1e-109, Sum P(2) = 7.1e-109
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 729 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 788
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 789 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 848
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 849 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747
Score = 194 (73.4 bits), Expect = 1.5e-52, Sum P(2) = 1.5e-52
Identities = 135/619 (21%), Positives = 238/619 (38%)
Query: 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKT-WIQSS 69
+ +V + V++ D++ + N + + ++KK + + + + + I+
Sbjct: 15 LKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDK 74
Query: 70 -EIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAK-----SE 123
++ + + L++ + + +ER E +TK + GL Q+ KEK + +
Sbjct: 75 RQLIENRKLIETQMERFKVVER----ETKTKAYSKEGLGLAQKVDPAQKEKEEVGQWLTN 130
Query: 124 TRDWLNNLVSELESQIDSFEAELEGLTVKKG-KTRPPRLTHLETSITRHKAHIMKLELIL 182
T D LN V + ES+++S + KKG K + R+ L+ I +H+ H+ LE IL
Sbjct: 131 TIDTLNMQVDQFESEVESLSVQTRK---KKGDKDKQDRIEGLKRHIEKHRYHVRMLETIL 187
Query: 183 RLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKV-ESLEDLVTI 240
R+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ + ++L + T
Sbjct: 188 RMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIPQAL--VATS 242
Query: 241 GPP-GLVKGXXXXXXXXXXXXXXXQMP---ATVISTHQQVTSVQEQGEDTASQDSNSDVA 296
P ++ P + T + +++G T S+ S S
Sbjct: 243 PPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAK 302
Query: 297 ARTPPAKSSGVGSTASTPAVGPA-TPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTG 355
+ P S+ + + P P+ P + + + T N ++P P S+ G +
Sbjct: 303 NGSKPVHSNQHPQSPAVPPTYPSGPPPATSALSSTPGNNGASTPAAPPSAL--GPKASPA 360
Query: 356 PI-SSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVP 414
P +S P + + + P GG A
Sbjct: 361 PSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSNSNSGTGGGAGK 420
Query: 415 SNGNLGAVPLVSD----VAKRNILGAE---ERLG-SSGMVQSLVSPLSNRMILSQAAKGN 466
NG +V+D VA + G+ + LG +SG S L + + G+
Sbjct: 421 QNGATSYSSVVADSPAEVALSSSGGSSASSQALGPTSGPHNPAPSTLKESSTAAPSGAGS 480
Query: 467 DGTGSIDSNNAGETVAMAGRVF-----TPSMGMQWRTGNSFQNQNEPGQFRGRTEI-APD 520
+GS +N+ G ++ + V TPS G N P QF EI AP+
Sbjct: 481 VASGS-GNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTLL---NGPPQFSTTPEIKAPE 536
Query: 521 QREKFXXXXXXXXXXG--HSNLLGMPLGGNKQFSSQQN--PLLQQFNSQGSSISAQAGLG 576
+ + L S + P Q Q S ++ L
Sbjct: 537 PLSSLKSMAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQPPLQLSEVNIP--LS 594
Query: 577 LGVQAPGMNSVTSASLQQQ 595
LGV G S+T L QQ
Sbjct: 595 LGVCPLGPVSLTKEQLYQQ 613
>ZFIN|ZDB-GENE-040927-6 [details] [associations]
symbol:cnot3a "CCR4-NOT transcription complex,
subunit 3a" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-040927-6 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000014743 EMBL:CR854927 IPI:IPI00996653
Ensembl:ENSDART00000137699 ArrayExpress:E9QGK5 Bgee:E9QGK5
Uniprot:E9QGK5
Length = 901
Score = 682 (245.1 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 191/508 (37%), Positives = 260/508 (51%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
QIKTW+ S+EIKDK+ LV+ RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +K
Sbjct: 61 QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE 120
Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSITRHKAHI 175
K ET WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I RH+ HI
Sbjct: 121 KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRYHI 180
Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESL 234
LE ILR+LDND + + ++ +KD +E Y++ +QD DFEE + LY L L+ + +
Sbjct: 181 RMLETILRMLDNDSIQVDAIHKIKDDVEYYIDSSQDPDFEEN---EFLYDDLDLEDIPAT 237
Query: 235 EDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQE--QGEDTASQDSN 292
L+ P G ++ P S T + E +G T S+ S
Sbjct: 238 --LMATSPQGHIEDEMFLQSSSTPTSTTSSSPIPP-SPATGTTEILEDKRGRSTDSEVSQ 294
Query: 293 SDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFD 352
S V P + SS S +S + ++ +S+ + S S +L SS V
Sbjct: 295 SPVKNGNP-SLSSFSSSASSGSSSSSSSLVSMATVVGGCTAVSGGSSLLASFSSA--VQQ 351
Query: 353 NTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXX-XXXXXXXXAT 411
+ V L+S++ + N P S P+L A+
Sbjct: 352 HPPQSQQQTQVKLSSTSIPSN--NTPSPPSHPTLPASTASSLPSSSTPGPITSNSLSQAS 409
Query: 412 AVPS--NGNLG------AVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAA 463
+VP + LG V S V++ LG S + L+S S +QAA
Sbjct: 410 SVPGVESSRLGLGKGGVTVTSSSSVSQMPGLGLTSLSSSLNTMAGLLSG-STPAPYAQAA 468
Query: 464 KGNDGTGSIDSNNAGETVAMAGRVFTPS 491
G TG S G + AG + PS
Sbjct: 469 AGGT-TGGASSGPVGSGSSSAG-ISIPS 494
Score = 402 (146.6 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 80/153 (52%), Positives = 98/153 (64%)
Query: 729 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 788
+Q+Y M E+A+ +P P DSER R Y+ R+P TPP + Q+ + F++RLS
Sbjct: 758 EQLYQQAMQEAAWTHMPHPSDSERIRQYLMRNPCPTPPFHHQMPPHHSDSIEFYQRLS-- 815
Query: 789 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 848
T+TLFF FYY + T QYL+AK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 816 ---TETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 872
Query: 849 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+YFD+ W QR K FTFEY YLED
Sbjct: 873 IYFDYE--------KWGQRKKEGFTFEYRYLED 897
Score = 63 (27.2 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 35/118 (29%), Positives = 44/118 (37%)
Query: 277 TSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASN 336
TS D S S + SS ST T GP+ SI +P T S A
Sbjct: 597 TSYSAVVADNTPDSSLSSASQSQNSHSSSSSSSTNQTLDNGPSLLSSITLPPSTPSPAFT 656
Query: 337 TSPVLPGSSSV-RGVFD---NTGPISS-SPPVNLTSSTKEEDVG-NFPGRRSSPSLTD 388
S PG S+ G NT I + PP +L + + +G G S LTD
Sbjct: 657 DST--PGGGSLLNGPHSYTPNTEAIKAPEPPSSLKAMAERAALGLALDGEIPSLHLTD 712
Score = 62 (26.9 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 38/177 (21%), Positives = 65/177 (36%)
Query: 437 EERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVA-MAGRVFTPSMGMQ 495
E++ G S + SP+ N + + +GS S+++ ++A + G S G
Sbjct: 281 EDKRGRSTDSEVSQSPVKNGNPSLSSFSSSASSGSSSSSSSLVSMATVVGGCTAVSGGSS 340
Query: 496 WRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQ 555
S Q P Q + +T++ H L + SS
Sbjct: 341 LLASFSSAVQQHPPQSQQQTQVKLSSTS--IPSNNTPSPPSHPTLPAST-ASSLPSSSTP 397
Query: 556 NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPN-PIHQQSSQQTLMSG 611
P+ SQ SS+ LG+ G+ +S+S+ Q P + SS M+G
Sbjct: 398 GPITSNSLSQASSVPGVESSRLGLGKGGVTVTSSSSVSQMPGLGLTSLSSSLNTMAG 454
Score = 57 (25.1 bits), Expect = 6.5e-35, Sum P(2) = 6.5e-35
Identities = 24/77 (31%), Positives = 34/77 (44%)
Query: 293 SDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFD 352
++VA PP+ G+T+ + V TP S A N+ ++S SSS D
Sbjct: 580 TNVAPARPPSGLKQNGATSYSAVVADNTPDSSLSSASQSQNSHSSS----SSSSTNQTLD 635
Query: 353 NTGPISSSPPVNLTSST 369
N GP S + L ST
Sbjct: 636 N-GP-SLLSSITLPPST 650
Score = 50 (22.7 bits), Expect = 3.5e-34, Sum P(2) = 3.5e-34
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 564 SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADV 618
+ SS+S GLGL + +N++ P P Q ++ T +GG V
Sbjct: 429 TSSSSVSQMPGLGLTSLSSSLNTMAGLLSGSTPAPYAQAAAGGT--TGGASSGPV 481
Score = 48 (22.0 bits), Expect = 5.7e-34, Sum P(2) = 5.7e-34
Identities = 21/86 (24%), Positives = 33/86 (38%)
Query: 276 VTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNAS 335
+TS+ A S S A A G +S P ++ I++P+ + A
Sbjct: 442 LTSLSSSLNTMAGLLSGSTPAPYAQAAAGGTTGGASSGPVGSGSSSAGISIPSGVVGGA- 500
Query: 336 NTSPVLPGSSSVRGVFDNTGPISSSP 361
NT G+ G + G + SSP
Sbjct: 501 NTGATSNGT----GTGASIGLLGSSP 522
>ZFIN|ZDB-GENE-030131-5838 [details] [associations]
symbol:cnot3b "CCR4-NOT transcription complex,
subunit 3b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-030131-5838 GO:GO:0005634 GO:GO:0006355
HOVERGEN:HBG051042 KO:K12580 EMBL:BC045499 IPI:IPI00859465
RefSeq:NP_956134.1 UniGene:Dr.6354 ProteinModelPortal:Q7ZVL4
STRING:Q7ZVL4 PRIDE:Q7ZVL4 GeneID:327627 KEGG:dre:327627 CTD:327627
InParanoid:Q7ZVL4 NextBio:20810115 ArrayExpress:Q7ZVL4 Bgee:Q7ZVL4
Uniprot:Q7ZVL4
Length = 908
Score = 670 (240.9 bits), Expect = 7.8e-92, Sum P(3) = 7.8e-92
Identities = 164/395 (41%), Positives = 228/395 (57%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+E+DLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVTEGVEQFEDIWKKLHNAANANQKEKYESDLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
QIKTW+ S+EIKDK+ LV+ RKLIE +MERFKI E+ETKTKA+SKEGLG K DP +K
Sbjct: 61 QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE 120
Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSITRHKAHI 175
K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I RH+ HI
Sbjct: 121 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRFHI 180
Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESL 234
LE ILR+LDND + + + +KD +E Y++ +QD DFEE + LY L L+++
Sbjct: 181 RMLETILRMLDNDSIQVDSIRKIKDDVEYYLDSSQDPDFEEN---EFLYDDLDLEEIPL- 236
Query: 235 EDLVTIGPPG-----LVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQ 289
+V P G + + PAT +T+ + +++G T S+
Sbjct: 237 -PVVPTSPAGHPDDEIFQHSSSTPTSTTSSSPIPPSPATC-TTNSE--DEKKRGHSTDSE 292
Query: 290 DSNSDVA-ARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVR 348
S S + + SS ++S+ + IS+ A + S+AS +S +L G+ SV
Sbjct: 293 ISQSPIKNGNQSSSLSSSSSLSSSSSGASSISLISMATLASSGSSASGSSSLL-GNISVP 351
Query: 349 GVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSS 383
N+G SS+ S ++ N S+
Sbjct: 352 --LQNSGSYSSATQQQTQQSQQQHQPKNSASSHSN 384
Score = 235 (87.8 bits), Expect = 7.8e-92, Sum P(3) = 7.8e-92
Identities = 48/95 (50%), Positives = 61/95 (64%)
Query: 729 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 788
DQ+Y M ESA+ +P P DSER R Y+ R+P T P + Q+ P + F++RLS
Sbjct: 742 DQLYQQAMQESAWAHMPHPSDSERIRQYLMRNPCPTLPFHHQMPPPHSDSVEFYQRLS-- 799
Query: 789 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH 823
T+TLFF FYY + T QYLAAK LKKQSWR+H
Sbjct: 800 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFH 831
Score = 88 (36.0 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 55/238 (23%), Positives = 96/238 (40%)
Query: 271 STHQQVTSVQEQGE--DTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPA 328
+T QQ Q+Q + ++AS SNS A+ + +S S +T +GP TP S +
Sbjct: 361 ATQQQTQQSQQQHQPKNSASSHSNSTSASNSILLPTSASTSPPNTSTLGPLTPSSQSQTN 420
Query: 329 QTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD 388
+S +S+ + G+S++ G + S P +L+ G+ P + +
Sbjct: 421 LGMSLSSSLG-LGKGTSALTGTNQMPSLVLSGMPASLSGFLS----GSTPAPYAQAAAAG 475
Query: 389 VRVMGRGGXXXXXXXXXXXXXA-TAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQ 447
G T++ +NG+LG+ L+ + ILG LGS+
Sbjct: 476 CVGSGLSSAIGTNISSTNSSGVVTSLGTNGSLGSTSLLGSGS--GILG----LGSTFAAV 529
Query: 448 SLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMA---GRVFTPSMGMQWRTGNSF 502
+ L+ + S G++ G I S+ A A G P G + G+S+
Sbjct: 530 EPLPLLAPSPVGSTLTSGSN-VGVIGSSGGTSGTANATGSGTQPRPPSGPKQNGGSSY 586
Score = 67 (28.6 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 36/153 (23%), Positives = 55/153 (35%)
Query: 451 SPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNE-PG 509
S LS+ LS ++ G I T+A +G + S + QN
Sbjct: 305 SSLSSSSSLSSSSSGASSISLISM----ATLASSGSSASGSSSLLGNISVPLQNSGSYSS 360
Query: 510 QFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQ--FSSQQNPLLQQFNSQ-- 565
+ +T+ + Q + SN + +P + +S PL SQ
Sbjct: 361 ATQQQTQQSQQQHQPKNSASSHSNSTSASNSILLPTSASTSPPNTSTLGPLTPSSQSQTN 420
Query: 566 -GSSISAQAGLGLGVQA-PGMNSVTSASLQQQP 596
G S+S+ GLG G A G N + S L P
Sbjct: 421 LGMSLSSSLGLGKGTSALTGTNQMPSLVLSGMP 453
Score = 53 (23.7 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 564 SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 606
S GSS S + L + P NS + +S QQ QQS QQ
Sbjct: 333 SSGSSASGSSSLLGNISVPLQNSGSYSSATQQQT---QQSQQQ 372
Score = 49 (22.3 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 32/132 (24%), Positives = 56/132 (42%)
Query: 266 PATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGV---GSTASTPAVGPATPI 322
P+ V ST ++V G + + + + T P SG G ++ + VG +T
Sbjct: 537 PSPVGSTLTSGSNVGVIGSSGGTSGTANATGSGTQPRPPSGPKQNGGSSYSAVVGDSTSD 596
Query: 323 S-INVPAQTLSNASN------TSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVG 375
S +N +Q+ ++ S+ T+ ++ SS+ G P SS PV S +
Sbjct: 597 SALNSASQSQNSQSSSLNLAVTNQLMDSGSSLLGSM-TLAP-SSPSPVYSESKAGGGSLL 654
Query: 376 NFPGRRSSPSLT 387
N P + P+ T
Sbjct: 655 NGPHSYTQPADT 666
Score = 43 (20.2 bits), Expect = 7.8e-92, Sum P(3) = 7.8e-92
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 547 GNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQ-QQPNPIHQQS 603
G+ S N Q NSQ SS++ L G + + S +L P+P++ +S
Sbjct: 591 GDSTSDSALNSASQSQNSQSSSLNLAVTNQL--MDSGSSLLGSMTLAPSSPSPVYSES 646
>POMBASE|SPAC1B3.05 [details] [associations]
symbol:not3 "CCR4-Not complex subunit Not3/5 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
PomBase:SPAC1B3.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006351 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850 PIR:T38023
RefSeq:NP_594789.2 STRING:O13870 EnsemblFungi:SPAC1B3.05.1
GeneID:2542126 OrthoDB:EOG4NW2V3 NextBio:20803198 Uniprot:O13870
Length = 640
Score = 574 (207.1 bits), Expect = 3.0e-91, Sum P(2) = 3.0e-91
Identities = 144/372 (38%), Positives = 209/372 (56%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
++RKLQ EI++ KKV +G+ +FD ++ K+ +++ +QKEK E DLK +IKKLQR RDQI
Sbjct: 2 SARKLQVEIEKTFKKVTDGIAIFDEVYEKLSASNSVSQKEKLEGDLKTQIKKLQRLRDQI 61
Query: 63 KTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKS 122
KTW S++IKDKKAL++ R+LIE +ME FK E+E K KAFSKEGL K DPKEK K
Sbjct: 62 KTWASSNDIKDKKALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKLDPKEKEKQ 121
Query: 123 ETRDWLNNLVSELESQIDSFEAELEGL--TVKKGKTRPPRLTHL---ETSITRHKAHIMK 177
+T W++N V ELE Q + EAE E L T K+GK +L+HL E+ I RHK H K
Sbjct: 122 DTIQWISNAVEELERQAELIEAEAESLKATFKRGKKDLSKLSHLSELESRIERHKWHQDK 181
Query: 178 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDL 237
LELI+R L+N ++SPE VND+++ + YVE +Q E+F++ + LY L LD+ + D
Sbjct: 182 LELIMRRLENSQISPEAVNDIQEDIMYYVECSQS--EDFAEDENLYDELNLDEASASYDA 239
Query: 238 VTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDS-NSDVA 296
G + ++V S +D A ++S ++D
Sbjct: 240 ERSGRSS--SSSHSPSPSASSSSSSENLLQDKAEAEEKV-SADASVQDIAEKESLDADKE 296
Query: 297 ARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGP 356
T + + A T G IS N Q S T+P +S+V + T
Sbjct: 297 LATNDQEDDEEENQAETQKDGA---ISNNENMQ--SEVQTTNPSA-STSAVTNITKPTLI 350
Query: 357 ISSSPPVNLTSS 368
+ S P+++++S
Sbjct: 351 QNPSTPLSVSNS 362
Score = 355 (130.0 bits), Expect = 3.0e-91, Sum P(2) = 3.0e-91
Identities = 70/144 (48%), Positives = 88/144 (61%)
Query: 739 SAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFA 798
S Y +P D+ + + YIP+ P P YPQ P+ + E + DTLF+
Sbjct: 505 SCVY-VPDATDAAKPQYYIPKDPYPVPHYYPQQPLPLFDSSEMTELVD-----PDTLFYM 558
Query: 799 FYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIAND 858
FYY+ TYQQY+A +ELKKQSWR+H+KY TWFQRHEEPK+ DEFE G+Y YFDF D
Sbjct: 559 FYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDFE--GD 616
Query: 859 DLQHGWCQRIKTEFTFEYNYLEDE 882
W QR K +F F Y YLED+
Sbjct: 617 -----WVQRKKADFRFTYQYLEDD 635
Score = 49 (22.3 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 280 QEQGEDTASQDSNSDVAARTPPAKSSGVGS-TASTPAVGPATPISIN---VPAQTLSNAS 335
Q+ G + +++ S+V P A +S V + T T P+TP+S++ V + NA+
Sbjct: 314 QKDGAISNNENMQSEVQTTNPSASTSAVTNITKPTLIQNPSTPLSVSNSKVASPETPNAT 373
Query: 336 NTSP----------------VLPGSSSVRGVFDNTGPIS-SSPPVNLTS-STKEEDVGN 376
+T+P + S S + P + +SP +N T +K + +G+
Sbjct: 374 HTAPKVEMRYASAAAAAAAALAKESPSHHYIMQQVRPETPNSPRLNSTVIQSKWDSLGH 432
>ASPGD|ASPL0000074489 [details] [associations]
symbol:AN4585 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0006355 EMBL:BN001303 HOGENOM:HOG000184850
OMA:ESIYHLP EnsemblFungi:CADANIAT00005852 Uniprot:C8V7V5
Length = 616
Score = 523 (189.2 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
Identities = 155/426 (36%), Positives = 214/426 (50%)
Query: 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63
SRK Q EID+ KKV EG+ F+ I+ K+ N Q++K E +LK+EIKKLQRYRDQIK
Sbjct: 3 SRKTQQEIDKTFKKVAEGIQTFEGIYEKIRAATNPTQRDKLEENLKREIKKLQRYRDQIK 62
Query: 64 TWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE 123
+W +E+KDK L++ R+ IE ME+FK EKE KTKA+SKEGL + DPK+K K E
Sbjct: 63 SWASGNEVKDKGPLLEQRRAIETCMEQFKAVEKEMKTKAYSKEGLSAASRLDPKDKEKVE 122
Query: 124 TRDWLNNLVSELESQIDSFEAELEGL--TVKKGK---TRPPRLTHLETSITRHKAHIMKL 178
T D+L+N+V EL+ +I++ EAE E L ++KKGK T+ RL L I RHK H+ KL
Sbjct: 123 TCDFLSNMVDELQQKIEAMEAEEESLQMSMKKGKKDVTKTNRLADLAHFIERHKWHVNKL 182
Query: 179 ELILRLLDNDELSPEQVNDVKDLLEDYVER-NQDDFEEFSDVDELYHLLPLDKVESLEDL 237
EL+LR L N + QV D+K+ ++ YVE NQ D+ + + LY L+ + E
Sbjct: 183 ELLLRSLQNGNIETSQVVDLKESIKYYVEDGNQIDYA--GEDETLYD--DLNMGDDAEAQ 238
Query: 238 VTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAA 297
IG P S TS + +A S V A
Sbjct: 239 FGIGGDNDRVSSQDTQSMQDEEVEAKPKPKAEASA----TSHRRP---SAQMKSPLPVLA 291
Query: 298 RTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPI 357
P+ SS S+AS + PA P + +P +TL AS + + G+ P
Sbjct: 292 TLHPSSSS---SSAS--GMKPAPPPT-RLPGETLKYASAAAAAAASDKNGVGIAPLPPPP 345
Query: 358 SSSP------PVNLTSSTKEEDVGNF-PGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXA 410
+SP P + SST V P +++P+ V GR A
Sbjct: 346 GASPAFPSAVPASKASSTASPVVTLAQPVPKATPAAAIVAEEGRSRTPAFSPKVSAAVSA 405
Query: 411 T-AVPS 415
+ VPS
Sbjct: 406 SNTVPS 411
Score = 389 (142.0 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
Identities = 75/149 (50%), Positives = 98/149 (65%)
Query: 735 QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 794
++L ++ P+P DSE+ R Y P++P TP YPQ I+ +P +E +D TDT
Sbjct: 478 RLLTASAANCPEPGDSEKPRHYKPQNPYNTPLYYPQEPLAILDDPRLYETGRID---TDT 534
Query: 795 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFH 854
LF+ FYY+Q +YQQYLAAK LK QSWR+H++Y TWFQRHEEPK +EFEQGTY +FD+
Sbjct: 535 LFYLFYYRQGSYQQYLAAKALKGQSWRFHKQYQTWFQRHEEPKTITEEFEQGTYRFFDY- 593
Query: 855 IANDDLQHGWCQRIKTEFTFEYNYLEDEL 883
+ W R K +F F Y YLEDEL
Sbjct: 594 ------ESTWMNRRKADFKFIYKYLEDEL 616
Score = 54 (24.1 bits), Expect = 2.2e-34, Sum P(2) = 2.2e-34
Identities = 19/79 (24%), Positives = 31/79 (39%)
Query: 300 PPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS 359
P A + S+ ++P V A P+ PA + S S V + + S
Sbjct: 352 PSAVPASKASSTASPVVTLAQPVPKATPAAAIVAEEGRSRTPAFSPKVSAAVSASNTVPS 411
Query: 360 SPPVNL--TSSTKEEDVGN 376
+P ++ T+STK N
Sbjct: 412 TPAMDKAETASTKPPAAAN 430
Score = 40 (19.1 bits), Expect = 6.5e-33, Sum P(2) = 6.5e-33
Identities = 16/63 (25%), Positives = 20/63 (31%)
Query: 283 GEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP 342
GE + + PP + S T A P S Q L AS + P
Sbjct: 431 GESNKENQAGEESIYHLPPGLQDLIHSFEVTKNRASANPSSQPPSVQRLLTASAANCPEP 490
Query: 343 GSS 345
G S
Sbjct: 491 GDS 493
>UNIPROTKB|F1RNH3 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580 OMA:IFYYLEP
GeneTree:ENSGT00390000014743 EMBL:FP476135 RefSeq:XP_003356092.1
Ensembl:ENSSSCT00000003625 GeneID:100520963 KEGG:ssc:100520963
Uniprot:F1RNH3
Length = 719
Score = 674 (242.3 bits), Expect = 9.6e-86, Sum P(3) = 9.6e-86
Identities = 166/400 (41%), Positives = 221/400 (55%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +K
Sbjct: 61 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE 120
Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTV----KKG-KTRPPRLTHLETSITRHKAHI 175
K E WL N + L Q+D FE+E+E L+V KKG K + R+ L+ I +H+ H+
Sbjct: 121 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV 180
Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESL 234
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ +
Sbjct: 181 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIP-- 235
Query: 235 EDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNSD 294
+ LV PP + + + T+ E ED + ++D
Sbjct: 236 QALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKKRGRSTD 293
Query: 295 VAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGV 350
PAK S V S +PAV P+ P P T S A +T+P G+ +
Sbjct: 294 SEVSQSPAKNGSKPVHSNQHPQSPAVPPSYPSG---PPPTAS-ALSTTPGNNGAPAPAAP 349
Query: 351 FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR 390
GP +S P + + + P S PS R
Sbjct: 350 ASALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTAQPR 389
Score = 169 (64.5 bits), Expect = 9.6e-86, Sum P(3) = 9.6e-86
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 729 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 788
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 611 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 668
Query: 789 SYGTDTLFFAFYY 801
T+TLFF FYY
Sbjct: 669 ---TETLFFIFYY 678
Score = 76 (31.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 30/88 (34%), Positives = 40/88 (45%)
Query: 291 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 343
S S V A +P A SS G+T S+ A+GP + N P T S +P V PG
Sbjct: 429 SYSSVVADSPAEVALSSSGGNTTSSQALGPPSGPH-NPPPSTSKEPSAAAPTGAGGVAPG 487
Query: 344 SSSVRGVFDNTGPISSSPPVNLTSSTKE 371
S + G P+ +PP + T S E
Sbjct: 488 SGNNSGGPSLLVPLPVNPPSSPTPSFSE 515
Score = 47 (21.6 bits), Expect = 9.6e-86, Sum P(3) = 9.6e-86
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 546 GGNKQFSSQQNPLLQQFN---SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQ 602
GGN S P N S SA A G G APG + + P P++
Sbjct: 447 GGNTTSSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPP 506
Query: 603 SS 604
SS
Sbjct: 507 SS 508
Score = 45 (20.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 15/59 (25%), Positives = 21/59 (35%)
Query: 267 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 325
+ V + +V G T+SQ PP +S S A+ G P S N
Sbjct: 432 SVVADSPAEVALSSSGGNTTSSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGN 490
Score = 40 (19.1 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 758 PRHPAVTPPSYPQVQAP 774
P H + TP Y Q AP
Sbjct: 361 PSHNSGTPAPYAQAVAP 377
>DICTYBASE|DDB_G0272056 [details] [associations]
symbol:DDB_G0272056 "putative CCR4-NOT complex
subunit 3" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR007207
InterPro:IPR007282 InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153
PIRSF:PIRSF005290 dictyBase:DDB_G0272056 GO:GO:0005634
GO:GO:0006355 EMBL:AAFI02000007 eggNOG:COG5665 KO:K12580
RefSeq:XP_645358.1 ProteinModelPortal:Q55AA8
EnsemblProtists:DDB0219997 GeneID:8618247 KEGG:ddi:DDB_G0272056
InParanoid:Q55AA8 OMA:GHIKSEE Uniprot:Q55AA8
Length = 866
Score = 472 (171.2 bits), Expect = 2.0e-84, Sum P(3) = 2.0e-84
Identities = 99/247 (40%), Positives = 157/247 (63%)
Query: 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63
+RKLQGEID+ LKKV +G+ FD + KVY + NQKEK+E+DLKKEIKKLQRYRDQIK
Sbjct: 3 TRKLQGEIDKTLKKVADGIIEFDCVLKKVYSAISTNQKEKYESDLKKEIKKLQRYRDQIK 62
Query: 64 TWIQSSEIKDKKALVDARKLIE-----------REMERFKICEK-ETKTKAFSKEGLGQQ 111
WI S+++K+K AL+++RK IE ++M+ F+ E+ E K K +SK+G G
Sbjct: 63 AWIASNDVKNKAALLESRKSIEMILINFKKNKIKKMDSFRHLERGEGKGK-YSKDG-GVD 120
Query: 112 PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 171
T E AK+ + W + ++ L +Q++SF+ ELE + V+K KT R+ L+ H
Sbjct: 121 SSTKD-EMAKTHVKTWASKAIATLRAQLESFDTELENIPVRKRKTESARVEQLQKFKNNH 179
Query: 172 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER--NQDDFEEFSDVDELYHLLPLD 229
K H++ LE +LR++D+D + +++ +KD +E Y++ +D +EE ++ +++ P
Sbjct: 180 KYHLLALEFLLRMMDDDRIPTDEIEKIKDSVECYIDSYTQEDTYEEPGEIYSIFNFKP-H 238
Query: 230 KVESLED 236
+ +ED
Sbjct: 239 NITDIED 245
Score = 431 (156.8 bits), Expect = 2.0e-84, Sum P(3) = 2.0e-84
Identities = 83/157 (52%), Positives = 104/157 (66%)
Query: 726 GMHDQMY-NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER 784
G + M M++ +F LP KD ER ++IPR+P P YPQ P+ +P +E+
Sbjct: 722 GFEEAMILTRHMMDISFKNLPDFKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNVFEK 781
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFE 844
+D TLFF FY++Q TYQQY AAKELKKQ WRYH+KY TWF+RHEEPK +EFE
Sbjct: 782 FDID-----TLFFIFYFKQGTYQQYQAAKELKKQGWRYHKKYLTWFRRHEEPKEITNEFE 836
Query: 845 QGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
QGTYVYFD+ + GWCQR KTEFTFEY +LE+
Sbjct: 837 QGTYVYFDY-------ETGWCQRKKTEFTFEYRFLEE 866
Score = 248 (92.4 bits), Expect = 2.7e-60, Sum P(3) = 2.7e-60
Identities = 93/390 (23%), Positives = 173/390 (44%)
Query: 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD-QIKTWIQS 68
E D VLKKV + + Y++D + +K + + +IK D + K +
Sbjct: 23 EFDCVLKKVYSAISTNQK---EKYESDLKKEIKKLQR-YRDQIKAWIASNDVKNKAALLE 78
Query: 69 SEIKDKKALVDARKLIEREMERFKICEK-ETKTKAFSKEGLGQQPKTDPKEKAKSETRDW 127
S + L++ +K ++M+ F+ E+ E K K +SK+G G T E AK+ + W
Sbjct: 79 SRKSIEMILINFKKNKIKKMDSFRHLERGEGKGK-YSKDG-GVDSSTKD-EMAKTHVKTW 135
Query: 128 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 187
+ ++ L +Q++SF+ ELE + V+K KT R+ L+ HK H++ LE +LR++D+
Sbjct: 136 ASKAIATLRAQLESFDTELENIPVRKRKTESARVEQLQKFKNNHKYHLLALEFLLRMMDD 195
Query: 188 DELSPEQVNDVKDLLEDYVER--NQDDFEEFSDVDELYHLLP--------------LDKV 231
D + +++ +KD +E Y++ +D +EE ++ +++ P LD+
Sbjct: 196 DRIPTDEIEKIKDSVECYIDSYTQEDTYEEPGEIYSIFNFKPHNITDIEDEDFDFSLDE- 254
Query: 232 ESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDS 291
ES +D + + T + T+ + ++Q
Sbjct: 255 ESDDDDDDDDYSDASDHDDDDDESSSKKDSNSENEDEIKETPKVATATATATAEKSTQPI 314
Query: 292 -NSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTL-SNASNTSPVLPGSSSVRG 349
++ + + P S + +T +G TP + N+ QT + AS SP SS +
Sbjct: 315 ISTSIQQQLPQPNKSPILQPNNTARIGSPTPTT-NLSQQTQPTKASTPSPTF--SSVTKT 371
Query: 350 VFDNTGPISSSPPVNLTSSTKE-EDVGNFP 378
N S S P +T ++ +GN P
Sbjct: 372 SIKNDNKQSHSQPTPVTIPNQQFPSLGNVP 401
Score = 61 (26.5 bits), Expect = 2.0e-84, Sum P(3) = 2.0e-84
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 548 NKQFSSQQN-PLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 606
N+QF S N P+ Q+ Q + A A L Q QQQ QQ QQ
Sbjct: 391 NQQFPSLGNVPMAQRLMQQQAQQQAAAAAQLAAQQAQTQQTQQQQQQQQQQQQQQQQQQQ 450
Score = 52 (23.4 bits), Expect = 9.4e-38, Sum P(3) = 9.4e-38
Identities = 21/137 (15%), Positives = 62/137 (45%)
Query: 39 NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREM---ERFKICE 95
NQ+++ ++ ++ Q+ Q K S+I D + + + +++ + + +
Sbjct: 457 NQQQQAPPQQQQAPQQQQQQNTQFKNKTGQSDINDVQDSLSQLNIKQQQQPPQQPQQQQQ 516
Query: 96 KETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGK 155
++ + + ++ QQP+ D + +ET D +NL ++I + +G ++ +
Sbjct: 517 QQQQQQQQQQQQQQQQPQADLDDSKNNETFDNSSNLYPGTLAEISTISRINDGTYQQQHQ 576
Query: 156 TRPPRLTHLETSITRHK 172
+ + +H ++ H+
Sbjct: 577 QQQQQQSHQQSHQQSHQ 593
Score = 49 (22.3 bits), Expect = 3.7e-83, Sum P(3) = 3.7e-83
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 593 QQQPNPIHQQSSQQTLMSGGQKDADVSH 620
QQQ HQQS QQ+ Q+ H
Sbjct: 577 QQQQQQSHQQSHQQSHQQSQQQSQQSQH 604
Score = 47 (21.6 bits), Expect = 3.2e-44, Sum P(3) = 3.2e-44
Identities = 18/98 (18%), Positives = 40/98 (40%)
Query: 745 PQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQN 804
PQP+ + + P P PQ Q P + + Y+QQ
Sbjct: 616 PQPQPQPQPQPQPQPQPQPQPQPQPQQQQPQHQSQQHQPQPQQPQQPQQPQHQP-YHQQQ 674
Query: 805 TYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDE 842
+YQQ + ++Q +Y ++ Q++++ +++ ++
Sbjct: 675 SYQQ-----QQQQQQQQYQQQQQQQQQQYQQQQMSQNQ 707
Score = 45 (20.9 bits), Expect = 9.7e-83, Sum P(3) = 9.7e-83
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 554 QQNPLLQQF-NSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 606
QQ P QQ N+Q + + Q+ + VQ +S++ +++QQ P Q QQ
Sbjct: 467 QQAPQQQQQQNTQFKNKTGQSDIN-DVQ----DSLSQLNIKQQQQPPQQPQQQQ 515
Score = 41 (19.5 bits), Expect = 2.5e-82, Sum P(3) = 2.5e-82
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 591 SLQQQPNPIHQQSSQQTLMS 610
S QQ HQQS QQ+ S
Sbjct: 583 SHQQSHQQSHQQSQQQSQQS 602
Score = 40 (19.1 bits), Expect = 3.2e-82, Sum P(3) = 3.2e-82
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 593 QQQPNPIHQQSSQQTLMSGGQKDADVSHLK 622
QQQ QQ QQ Q AD+ K
Sbjct: 512 QQQQQQQQQQQQQQQQQQQQQPQADLDDSK 541
Score = 39 (18.8 bits), Expect = 4.1e-82, Sum P(3) = 4.1e-82
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 593 QQQPNPIHQQSSQQ 606
Q Q P HQQ S Q
Sbjct: 664 QPQHQPYHQQQSYQ 677
Score = 39 (18.8 bits), Expect = 4.1e-82, Sum P(3) = 4.1e-82
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 581 APGMNSVTSASLQQQPNPIHQQSSQQTL 608
+P +SVT S++ H Q + T+
Sbjct: 362 SPTFSSVTKTSIKNDNKQSHSQPTPVTI 389
Score = 39 (18.8 bits), Expect = 3.8e-41, Sum P(2) = 3.8e-41
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 760 HPAVTPPSYPQVQAPIVSNPAFWERL 785
H TP + P Q P + N +RL
Sbjct: 381 HSQPTPVTIPNQQFPSLGNVPMAQRL 406
>WB|WBGene00003826 [details] [associations]
symbol:ntl-3 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 463 (168.0 bits), Expect = 4.8e-72, Sum P(3) = 4.8e-72
Identities = 101/236 (42%), Positives = 147/236 (62%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKL EID+ KK+ EGV++F+ K+++ ++ NQ++K++ DLKKEIKKLQR RD
Sbjct: 1 MAEKRKLLAEIDKCFKKIDEGVELFEETMEKMHEANSDNQRDKYQDDLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
Q+K W +SEIKDK L RKLIE+ ME+FK E+E KTK SK GL + K DPKEK
Sbjct: 61 QVKNWQNASEIKDKDKLNSYRKLIEQRMEQFKDVERENKTKPHSKLGLSAEEKLDPKEKE 120
Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKT--------RPPRLTHLET 166
K+ET DW+ + + L ++D E +LE L+ K+GK R R+ L+
Sbjct: 121 KAETMDWIQHQIRSLNEEVDRTEMQLESLSNTDTGKGKRGKKEDAKTKNEREKRVEGLKH 180
Query: 167 SITRHKAHIMKLELILRLLDNDELSPEQVND-VKDLLEDYVER-NQDDFEEFSDVD 220
+ R HI KLE+ +R++ N+ L+ + V + +K+ +E YVE N++D EE + D
Sbjct: 181 HLERINFHIEKLEICMRMISNESLNAKMVLETLKEPIETYVEMMNEEDSEEADNYD 236
Score = 328 (120.5 bits), Expect = 4.8e-72, Sum P(3) = 4.8e-72
Identities = 74/147 (50%), Positives = 88/147 (59%)
Query: 737 LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPA-FWERLSLDSYGTDTL 795
LE A K P DSE+ R+Y+ + P Y Q AP S+ ++ RL+ DTL
Sbjct: 566 LELACAKATFPLDSEKPRNYLSKVSFPVPSWYGQT-APNTSDSLEYYLRLA-----PDTL 619
Query: 796 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHI 855
FF FYY + T Q LAAK LKK SWR+H KY TWFQRHEEPK D++EQGTYVYFDF
Sbjct: 620 FFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQITDDYEQGTYVYFDFE- 678
Query: 856 ANDDLQHGWCQRIKTEFTFEYNYLEDE 882
W QR K FTFEY +LED+
Sbjct: 679 -------KWSQRKKESFTFEYKFLEDK 698
Score = 97 (39.2 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 92/405 (22%), Positives = 164/405 (40%)
Query: 6 KLQGEIDRVLKKVQEGVDVFDSIWN--KVYDTDNANQKEKF-EADLK--KEIKKLQRYRD 60
K Q ++ + +KK+Q D + N ++ D D N K E ++ K++++ + +
Sbjct: 43 KYQDDLKKEIKKLQRLRDQVKNWQNASEIKDKDKLNSYRKLIEQRMEQFKDVERENKTKP 102
Query: 61 QIKTWIQSSEIKDKKALVDARKL--IEREMERF--KICEKETKTKAFSKEGLGQQPKTDP 116
K + + E D K A + I+ ++ ++ E + ++ S G+ K
Sbjct: 103 HSKLGLSAEEKLDPKEKEKAETMDWIQHQIRSLNEEVDRTEMQLESLSNTDTGKG-KRGK 161
Query: 117 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIM 176
KE AK T++ V L+ ++ +E L + R+ E+ + +
Sbjct: 162 KEDAK--TKNEREKRVEGLKHHLERINFHIEKLEICM------RMISNESLNAKMVLETL 213
Query: 177 K--LELILRLLDNDELSPEQVN-DVKDLLEDY-VER--NQDDFEEFSDVDELY----HLL 226
K +E + ++ N+E S E N D D ++ +E+ Q + VD+ + H L
Sbjct: 214 KEPIETYVEMM-NEEDSEEADNYDPDDAYDELNLEKLCQQIGGVNVASVDDEHRENGHEL 272
Query: 227 PLDKVESLEDLVTIGPPGLVKGXXXXXXXXX---XXXXXXQMPATVISTHQQVTSVQEQG 283
+D ES G V G +P ++ S H +V +
Sbjct: 273 GIDTAES----------GAVSGSRHTSGENGQPPSPAGRRIVPLSMPSPH----AVTPEL 318
Query: 284 EDTASQDSNSDVAARTPPA--------------KSSGVGSTASTPAVGPATPISINVPAQ 329
+ AS+DSN D RTPP S G + +TP P+TPIS N PA
Sbjct: 319 KRLASKDSNVD-RPRTPPVTPASAAPPPPGIPYNSVAAGRSTTTPV--PSTPISANSPAP 375
Query: 330 TLSNASN---TSPVLPGSSSVRGVFDNTGPISSSPPV--NLTSST 369
+L+ A+ SPV P +++ +S P ++TS+T
Sbjct: 376 SLAQAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQKKESITSTT 420
Score = 42 (19.8 bits), Expect = 4.8e-72, Sum P(3) = 4.8e-72
Identities = 20/88 (22%), Positives = 35/88 (39%)
Query: 287 ASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSS 346
AS+ + + P K S +T+ A PAT + T S+ P++ +
Sbjct: 397 ASKPVLAQSVSEMPQKKESITSTTSRGSAAAPAT--TTTTTTTTTSSEPAEVPLVV-QQT 453
Query: 347 VRGVFDNTGPISSSPPVNLTSSTKEEDV 374
V F N G S + LT +++ +
Sbjct: 454 VSETFVN-GVDSPAAATRLTQQERQQQL 480
Score = 37 (18.1 bits), Expect = 6.7e-41, Sum P(2) = 6.7e-41
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 748 KDSERARSYIPRHPAVTPPS 767
KDS R PR P VTP S
Sbjct: 324 KDSNVDR---PRTPPVTPAS 340
>UNIPROTKB|G5EFX8 [details] [associations]
symbol:ntl-3 "Protein NTL-3, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 463 (168.0 bits), Expect = 4.8e-72, Sum P(3) = 4.8e-72
Identities = 101/236 (42%), Positives = 147/236 (62%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKL EID+ KK+ EGV++F+ K+++ ++ NQ++K++ DLKKEIKKLQR RD
Sbjct: 1 MAEKRKLLAEIDKCFKKIDEGVELFEETMEKMHEANSDNQRDKYQDDLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
Q+K W +SEIKDK L RKLIE+ ME+FK E+E KTK SK GL + K DPKEK
Sbjct: 61 QVKNWQNASEIKDKDKLNSYRKLIEQRMEQFKDVERENKTKPHSKLGLSAEEKLDPKEKE 120
Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTV------KKGKT--------RPPRLTHLET 166
K+ET DW+ + + L ++D E +LE L+ K+GK R R+ L+
Sbjct: 121 KAETMDWIQHQIRSLNEEVDRTEMQLESLSNTDTGKGKRGKKEDAKTKNEREKRVEGLKH 180
Query: 167 SITRHKAHIMKLELILRLLDNDELSPEQVND-VKDLLEDYVER-NQDDFEEFSDVD 220
+ R HI KLE+ +R++ N+ L+ + V + +K+ +E YVE N++D EE + D
Sbjct: 181 HLERINFHIEKLEICMRMISNESLNAKMVLETLKEPIETYVEMMNEEDSEEADNYD 236
Score = 328 (120.5 bits), Expect = 4.8e-72, Sum P(3) = 4.8e-72
Identities = 74/147 (50%), Positives = 88/147 (59%)
Query: 737 LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPA-FWERLSLDSYGTDTL 795
LE A K P DSE+ R+Y+ + P Y Q AP S+ ++ RL+ DTL
Sbjct: 566 LELACAKATFPLDSEKPRNYLSKVSFPVPSWYGQT-APNTSDSLEYYLRLA-----PDTL 619
Query: 796 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHI 855
FF FYY + T Q LAAK LKK SWR+H KY TWFQRHEEPK D++EQGTYVYFDF
Sbjct: 620 FFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQITDDYEQGTYVYFDFE- 678
Query: 856 ANDDLQHGWCQRIKTEFTFEYNYLEDE 882
W QR K FTFEY +LED+
Sbjct: 679 -------KWSQRKKESFTFEYKFLEDK 698
Score = 97 (39.2 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 92/405 (22%), Positives = 164/405 (40%)
Query: 6 KLQGEIDRVLKKVQEGVDVFDSIWN--KVYDTDNANQKEKF-EADLK--KEIKKLQRYRD 60
K Q ++ + +KK+Q D + N ++ D D N K E ++ K++++ + +
Sbjct: 43 KYQDDLKKEIKKLQRLRDQVKNWQNASEIKDKDKLNSYRKLIEQRMEQFKDVERENKTKP 102
Query: 61 QIKTWIQSSEIKDKKALVDARKL--IEREMERF--KICEKETKTKAFSKEGLGQQPKTDP 116
K + + E D K A + I+ ++ ++ E + ++ S G+ K
Sbjct: 103 HSKLGLSAEEKLDPKEKEKAETMDWIQHQIRSLNEEVDRTEMQLESLSNTDTGKG-KRGK 161
Query: 117 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIM 176
KE AK T++ V L+ ++ +E L + R+ E+ + +
Sbjct: 162 KEDAK--TKNEREKRVEGLKHHLERINFHIEKLEICM------RMISNESLNAKMVLETL 213
Query: 177 K--LELILRLLDNDELSPEQVN-DVKDLLEDY-VER--NQDDFEEFSDVDELY----HLL 226
K +E + ++ N+E S E N D D ++ +E+ Q + VD+ + H L
Sbjct: 214 KEPIETYVEMM-NEEDSEEADNYDPDDAYDELNLEKLCQQIGGVNVASVDDEHRENGHEL 272
Query: 227 PLDKVESLEDLVTIGPPGLVKGXXXXXXXXX---XXXXXXQMPATVISTHQQVTSVQEQG 283
+D ES G V G +P ++ S H +V +
Sbjct: 273 GIDTAES----------GAVSGSRHTSGENGQPPSPAGRRIVPLSMPSPH----AVTPEL 318
Query: 284 EDTASQDSNSDVAARTPPA--------------KSSGVGSTASTPAVGPATPISINVPAQ 329
+ AS+DSN D RTPP S G + +TP P+TPIS N PA
Sbjct: 319 KRLASKDSNVD-RPRTPPVTPASAAPPPPGIPYNSVAAGRSTTTPV--PSTPISANSPAP 375
Query: 330 TLSNASN---TSPVLPGSSSVRGVFDNTGPISSSPPV--NLTSST 369
+L+ A+ SPV P +++ +S P ++TS+T
Sbjct: 376 SLAQAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQKKESITSTT 420
Score = 42 (19.8 bits), Expect = 4.8e-72, Sum P(3) = 4.8e-72
Identities = 20/88 (22%), Positives = 35/88 (39%)
Query: 287 ASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSS 346
AS+ + + P K S +T+ A PAT + T S+ P++ +
Sbjct: 397 ASKPVLAQSVSEMPQKKESITSTTSRGSAAAPAT--TTTTTTTTTSSEPAEVPLVV-QQT 453
Query: 347 VRGVFDNTGPISSSPPVNLTSSTKEEDV 374
V F N G S + LT +++ +
Sbjct: 454 VSETFVN-GVDSPAAATRLTQQERQQQL 480
Score = 37 (18.1 bits), Expect = 6.7e-41, Sum P(2) = 6.7e-41
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 748 KDSERARSYIPRHPAVTPPS 767
KDS R PR P VTP S
Sbjct: 324 KDSNVDR---PRTPPVTPAS 340
>CGD|CAL0002492 [details] [associations]
symbol:NOT5 species:5476 "Candida albicans" [GO:0030445
"yeast-form cell wall" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0016337 "cell-cell adhesion" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030015 "CCR4-NOT core
complex" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 CGD:CAL0002492
GO:GO:0005634 GO:GO:0030445 GO:GO:0071216 GO:GO:0036180
GO:GO:0009405 GO:GO:0006355 GO:GO:0016337 EMBL:AACQ01000053
EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1 RefSeq:XP_717644.1
STRING:Q5A755 GeneID:3640763 GeneID:3640828 KEGG:cal:CaO19.12573
KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 463 (168.0 bits), Expect = 9.3e-52, Sum P(2) = 9.3e-52
Identities = 133/408 (32%), Positives = 208/408 (50%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
++RKLQ E D++ KK+ EG+ FD I +K+ T++A+Q+EK E DLKKE+KKLQR RDQ+
Sbjct: 2 SARKLQQEFDKLNKKISEGLQAFDEIKDKINATESASQREKLENDLKKELKKLQRSRDQL 61
Query: 63 KTWIQSSEIK-DKKALVDARKLIEREMERFKICEKETKTKAFSKEGL---GQQPKTDPKE 118
K W+ S IK DK L + R IE M++FK EK +K K FS EGL QQ ++ +
Sbjct: 62 KQWLGDSSIKLDKNVLQENRTKIEHAMDQFKELEKSSKIKQFSNEGLELQSQQKRSRFGD 121
Query: 119 KAK-SETRDWLNNLVSELESQIDSFEAELEGLTV----KKGKTRPPRLTHLETSITRHKA 173
AK E ++N ++ +L Q + E EL+ L+ K G + + ++ I R+ +
Sbjct: 122 DAKYQEACTYINEVIEQLNGQNEELEQELDSLSGQSKRKGGSSIQSSIDDVKYKIERNNS 181
Query: 174 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVES 233
HI KLE +L LDND+L P +++D+KD L+ YVE NQD E++ + DE Y L +D+
Sbjct: 182 HISKLEEVLENLDNDKLDPARIDDIKDDLDYYVENNQD--EDYVEYDEFYDQLEVDE--- 236
Query: 234 LEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNS 293
ED V + G + + QQ ++S + +
Sbjct: 237 -EDDVEV--QGSLAQMAAETEDERRRDEERKREEKEKEKQQQNPPRTSSSVSSSSSSNQN 293
Query: 294 DVAARTPPA---KSS-----GVG---STASTPAVGPATPISINVPAQTLSNASNTSPVLP 342
++ TPPA K S +G + +++ A +TP+ P TL+ A P+
Sbjct: 294 NIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKLKP--TLAPAPAPPPITS 351
Query: 343 GSSSVRGV-FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSP-SLTD 388
G+S + T SS+ ++ + + + N R SP + TD
Sbjct: 352 GTSYSNAIKAAQTASTSSTSNSSIAHTANDNNNTNKGNRSVSPLASTD 399
Score = 134 (52.2 bits), Expect = 9.3e-52, Sum P(2) = 9.3e-52
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 736 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS-NPAFWERLSLDSYGTDT 794
+LE++ P D+E+ R Y P + V P S Q P+ N + + + + DT
Sbjct: 493 LLETSLLNCPDSYDAEKPRQYNPVN--VHPSSIDYPQEPMYELNSSHY----MKKFDNDT 546
Query: 795 LFFAFYYQQ--NTYQQYLAAKELKKQSWRYHRKYNTWFQR 832
LFF FYY ++ +Y AAKEL ++ W ++ +++ WF +
Sbjct: 547 LFFCFYYGDGIDSISKYNAAKELSRRGWVFNTEFSQWFSK 586
Score = 46 (21.3 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 467 DGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNS 501
DG SI NA + ++ G VF QW + +S
Sbjct: 555 DGIDSISKYNAAKELSRRGWVFNTEFS-QWFSKDS 588
>UNIPROTKB|Q5A755 [details] [associations]
symbol:NOT5 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Not5p" species:237561 "Candida albicans SC5314"
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0016337 "cell-cell
adhesion" evidence=IMP] [GO:0030445 "yeast-form cell wall"
evidence=IDA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
CGD:CAL0002492 GO:GO:0005634 GO:GO:0030445 GO:GO:0071216
GO:GO:0036180 GO:GO:0009405 GO:GO:0006355 GO:GO:0016337
EMBL:AACQ01000053 EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1
RefSeq:XP_717644.1 STRING:Q5A755 GeneID:3640763 GeneID:3640828
KEGG:cal:CaO19.12573 KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 463 (168.0 bits), Expect = 9.3e-52, Sum P(2) = 9.3e-52
Identities = 133/408 (32%), Positives = 208/408 (50%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
++RKLQ E D++ KK+ EG+ FD I +K+ T++A+Q+EK E DLKKE+KKLQR RDQ+
Sbjct: 2 SARKLQQEFDKLNKKISEGLQAFDEIKDKINATESASQREKLENDLKKELKKLQRSRDQL 61
Query: 63 KTWIQSSEIK-DKKALVDARKLIEREMERFKICEKETKTKAFSKEGL---GQQPKTDPKE 118
K W+ S IK DK L + R IE M++FK EK +K K FS EGL QQ ++ +
Sbjct: 62 KQWLGDSSIKLDKNVLQENRTKIEHAMDQFKELEKSSKIKQFSNEGLELQSQQKRSRFGD 121
Query: 119 KAK-SETRDWLNNLVSELESQIDSFEAELEGLTV----KKGKTRPPRLTHLETSITRHKA 173
AK E ++N ++ +L Q + E EL+ L+ K G + + ++ I R+ +
Sbjct: 122 DAKYQEACTYINEVIEQLNGQNEELEQELDSLSGQSKRKGGSSIQSSIDDVKYKIERNNS 181
Query: 174 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVES 233
HI KLE +L LDND+L P +++D+KD L+ YVE NQD E++ + DE Y L +D+
Sbjct: 182 HISKLEEVLENLDNDKLDPARIDDIKDDLDYYVENNQD--EDYVEYDEFYDQLEVDE--- 236
Query: 234 LEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNS 293
ED V + G + + QQ ++S + +
Sbjct: 237 -EDDVEV--QGSLAQMAAETEDERRRDEERKREEKEKEKQQQNPPRTSSSVSSSSSSNQN 293
Query: 294 DVAARTPPA---KSS-----GVG---STASTPAVGPATPISINVPAQTLSNASNTSPVLP 342
++ TPPA K S +G + +++ A +TP+ P TL+ A P+
Sbjct: 294 NIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKLKP--TLAPAPAPPPITS 351
Query: 343 GSSSVRGV-FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSP-SLTD 388
G+S + T SS+ ++ + + + N R SP + TD
Sbjct: 352 GTSYSNAIKAAQTASTSSTSNSSIAHTANDNNNTNKGNRSVSPLASTD 399
Score = 134 (52.2 bits), Expect = 9.3e-52, Sum P(2) = 9.3e-52
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 736 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS-NPAFWERLSLDSYGTDT 794
+LE++ P D+E+ R Y P + V P S Q P+ N + + + + DT
Sbjct: 493 LLETSLLNCPDSYDAEKPRQYNPVN--VHPSSIDYPQEPMYELNSSHY----MKKFDNDT 546
Query: 795 LFFAFYYQQ--NTYQQYLAAKELKKQSWRYHRKYNTWFQR 832
LFF FYY ++ +Y AAKEL ++ W ++ +++ WF +
Sbjct: 547 LFFCFYYGDGIDSISKYNAAKELSRRGWVFNTEFSQWFSK 586
Score = 46 (21.3 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 467 DGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNS 501
DG SI NA + ++ G VF QW + +S
Sbjct: 555 DGIDSISKYNAAKELSRRGWVFNTEFS-QWFSKDS 588
>SGD|S000006276 [details] [associations]
symbol:NOT5 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IPI] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0030015 "CCR4-NOT core complex" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0016567 "protein
ubiquitination" evidence=IMP] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IDA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 SGD:S000006276
GO:GO:0005634 GO:GO:0005737 GO:GO:0016567 EMBL:Z71255 EMBL:BK006949
GO:GO:0006368 EMBL:U51033 EMBL:Z49219 GO:GO:0032968 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850
GeneTree:ENSGT00390000014743 GO:GO:0031087 OrthoDB:EOG4NW2V3
EMBL:AY692887 PIR:S54093 RefSeq:NP_015397.1
ProteinModelPortal:Q12514 DIP:DIP-2257N IntAct:Q12514
MINT:MINT-420084 STRING:Q12514 PaxDb:Q12514 PeptideAtlas:Q12514
EnsemblFungi:YPR072W GeneID:856186 KEGG:sce:YPR072W CYGD:YPR072w
OMA:HPTSIFF NextBio:981366 Genevestigator:Q12514 GermOnline:YPR072W
Uniprot:Q12514
Length = 560
Score = 419 (152.6 bits), Expect = 1.2e-51, Sum P(3) = 1.2e-51
Identities = 98/225 (43%), Positives = 141/225 (62%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD--NANQKEKFEADLKKEIKKLQRYRD 60
+ RKLQ +ID++LKKV+EG++ FD I+ K TD N++ +EK E+DLK+EIKKLQ++RD
Sbjct: 2 SQRKLQQDIDKLLKKVKEGIEDFDDIYEKFQSTDPSNSSHREKLESDLKREIKKLQKHRD 61
Query: 61 QIKTWIQSSEIKDKKA-LVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT--DPK 117
QIKTW+ ++KDK++ L+ R+LIE MERFK EK KTK FSKE L P DPK
Sbjct: 62 QIKTWLSKEDVKDKQSVLMTNRRLIENGMERFKSVEKLMKTKQFSKEAL-TNPDIIKDPK 120
Query: 118 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMK 177
E K + ++++ + EL+ Q++ +EA+ E E RH+ HI
Sbjct: 121 ELKKRDQVLFIHDCLDELQKQLEQYEAQ-EN----------------EEQTERHEFHIAN 163
Query: 178 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDE 221
LE IL+ L N+E+ PE V + +D ++ YVE N D DF E+ + E
Sbjct: 164 LENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIEYDTIYE 208
Score = 123 (48.4 bits), Expect = 1.2e-51, Sum P(3) = 1.2e-51
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 790 YGTDTLFFAFYYQQNTYQQYLAAKEL-KKQSWRYHRKYNTWFQRH-EEPKVANDEFEQGT 847
+ DTLFF FY+ Q +Y+Q+LAA+EL K ++W +++ W+ + E+ + E+ +
Sbjct: 472 FDLDTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKEIEKLPPGMGKSEEES 531
Query: 848 YVYFDF 853
+ YFD+
Sbjct: 532 WRYFDY 537
Score = 51 (23.0 bits), Expect = 5.7e-05, Sum P(3) = 5.7e-05
Identities = 29/120 (24%), Positives = 50/120 (41%)
Query: 128 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 187
++ L+ +++ I+ F+ E K T P +H E + K I KL+ +
Sbjct: 10 IDKLLKKVKEGIEDFDDIYE----KFQSTDPSNSSHREKLESDLKREIKKLQKHRDQIKT 65
Query: 188 DELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVK 247
LS E V D + +L ++ E F V++L K E+L + I P +K
Sbjct: 66 -WLSKEDVKDKQSVLMTNRRLIENGMERFKSVEKLMKTKQFSK-EALTNPDIIKDPKELK 123
Score = 47 (21.6 bits), Expect = 1.2e-51, Sum P(3) = 1.2e-51
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 291 SNSDVAARTP--PAKSSGVGSTASTPAVGPATPISINVPAQTLSNAS 335
S SD A TP P S S +STP TP+S + P T+ + S
Sbjct: 256 SISD-RATTPIAPGVESASQSISSTP-----TPVSTDTPLHTVKDDS 296
Score = 43 (20.2 bits), Expect = 2.6e-43, Sum P(3) = 2.6e-43
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 816 KKQSWRYHRKYNTWFQRH-EEPKVANDE-FEQ 845
+++SWRY +W R V N+E FE+
Sbjct: 528 EEESWRYFDYKKSWLARRCGNDFVYNEEDFEK 559
>SGD|S000001300 [details] [associations]
symbol:NOT3 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IDA;IPI] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IMP] [GO:0016567 "protein ubiquitination"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
SGD:S000001300 GO:GO:0005634 GO:GO:0005737 EMBL:BK006942
GO:GO:0006351 GO:GO:0016567 EMBL:Z46861 GO:GO:0032968 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 KO:K12580 GeneTree:ENSGT00390000014743
KO:K10661 RefSeq:NP_012234.3 GeneID:854781 KEGG:sce:YIL030C
OrthoDB:EOG4NW2V3 EMBL:X04289 EMBL:AY692897 PIR:S49940
RefSeq:NP_012226.3 ProteinModelPortal:P06102 DIP:DIP-2256N
IntAct:P06102 MINT:MINT-426406 STRING:P06102 PaxDb:P06102
PeptideAtlas:P06102 EnsemblFungi:YIL038C GeneID:854773
KEGG:sce:YIL038C CYGD:YIL038c HOGENOM:HOG000113831 OMA:MEKYKAV
NextBio:977541 Genevestigator:P06102 GermOnline:YIL038C
Uniprot:P06102
Length = 836
Score = 443 (161.0 bits), Expect = 7.9e-47, Sum P(3) = 7.9e-47
Identities = 96/239 (40%), Positives = 151/239 (63%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYD-TDNANQKEKFEADLKKEIKKLQRYRDQ 61
A RKLQ E+DRV KK+ EG+++F+S + + T+N +QK+K E+DLK+E+KKLQR R+Q
Sbjct: 2 AHRKLQQEVDRVFKKINEGLEIFNSYYERHESCTNNPSQKDKLESDLKREVKKLQRLREQ 61
Query: 62 IKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAK 121
IK+W S +IKDK +L+D R+ +E ME++K EK +K KA+S L + DP+E+ +
Sbjct: 62 IKSWQSSPDIKDKDSLLDYRRSVEIAMEKYKAVEKASKEKAYSNISLKKSETLDPQERER 121
Query: 122 SETRDWLNNLVSELESQIDSFEAELEGLTV--KKGKTRPPRLTHLETSITRHKA----HI 175
+ ++L+ ++ ELE Q DS + E++ L + KK KT + R +A H
Sbjct: 122 RDISEYLSQMIDELERQYDSLQVEIDKLLLLNKKKKTSSTTNDEKKEQYKRFQARYRWHQ 181
Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESL 234
++EL LRLL N+EL P+ V +V+D + +VE NQD +F + + +Y L L E++
Sbjct: 182 QQMELALRLLANEELDPQDVKNVQDDINYFVESNQDP--DFVEDETIYDGLNLQSNEAI 238
Score = 95 (38.5 bits), Expect = 7.9e-47, Sum P(3) = 7.9e-47
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 794 TLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDF 853
+LF+ +Y+ ++ +A K L ++ W+ + WF R E K N+ E G Y F
Sbjct: 707 SLFYNYYFAITPLEREIAYKILNERDWKVSKDGTMWFLRQGEVKFFNEICEVGDYKIFKL 766
Query: 854 HIANDDLQHGWCQRIKTEFTFEYNYLE 880
DD W K F +Y++L+
Sbjct: 767 ----DD----WTVIDKINFRLDYSFLQ 785
Score = 70 (29.7 bits), Expect = 7.9e-47, Sum P(3) = 7.9e-47
Identities = 31/129 (24%), Positives = 59/129 (45%)
Query: 270 ISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQ 329
+ ++VTS +T+++ + A T +S +GS +TP + ++ +S+ P
Sbjct: 411 VEKDRKVTSASSTISNTSTKTPTTAAATTTSSNANSRIGSALNTPKLSTSS-LSLQ-PDN 468
Query: 330 T--LSNASNTSPVLP-GSSSVRG---VFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSS 383
T S+A+ + VL G+++V F S P V+L ++ K E ++
Sbjct: 469 TGASSSAATAAAVLAAGAAAVHQNNQAFYRNMSSSHHPLVSLATNPKSEHEVATTVNQNG 528
Query: 384 PSLTDVRVM 392
P T +VM
Sbjct: 529 PENTTKKVM 537
Score = 46 (21.3 bits), Expect = 2.5e-44, Sum P(3) = 2.5e-44
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 302 AKSSGVGST-ASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS 360
AK + +T A+ P GP++ S +P S + SP SSS + + T P +
Sbjct: 285 AKLAAKNATGAAIPVAGPSSTPSPVIPVADASKETERSP----SSSP--IHNATKP-EEA 337
Query: 361 PPVNLTSSTKEEDVGNFPGRRSSPS 385
++ S D P + SPS
Sbjct: 338 VKTSIKSPRSSAD-NLLPSLQKSPS 361
Score = 45 (20.9 bits), Expect = 3.2e-44, Sum P(3) = 3.2e-44
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 299 TPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNT-GPI 357
T PAK +G A + + + T+SN S +P +++ ++ G
Sbjct: 392 TLPAKPAGELKWAVAASQAVEKDRKVTSASSTISNTSTKTPTTAAATTTSSNANSRIGSA 451
Query: 358 SSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRG 395
++P ++ +S + + D N G SS + T V+ G
Sbjct: 452 LNTPKLSTSSLSLQPD--N-TGASSSAA-TAAAVLAAG 485
Score = 45 (20.9 bits), Expect = 3.2e-44, Sum P(3) = 3.2e-44
Identities = 26/111 (23%), Positives = 45/111 (40%)
Query: 281 EQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNA-SNTSP 339
++ +A+ ++ ++V + G+T PA PA P A S A
Sbjct: 357 QKSPSSATPETPTNVHTHIHQTPNGITGATTLKPATLPAKPAGELKWAVAASQAVEKDRK 416
Query: 340 VLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVG---NFPGRRSSPSLT 387
V SS++ T P +++ TSS +G N P + S+ SL+
Sbjct: 417 VTSASSTISNTSTKT-PTTAA--ATTTSSNANSRIGSALNTP-KLSTSSLS 463
Score = 44 (20.5 bits), Expect = 4.1e-44, Sum P(3) = 4.1e-44
Identities = 16/92 (17%), Positives = 38/92 (41%)
Query: 291 SNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGV 350
S S ++ + +S +TA+ A + N A + +S+ P++ +++ +
Sbjct: 458 STSSLSLQPDNTGASSSAATAAAVLAAGAAAVHQNNQAFYRNMSSSHHPLVSLATNPKSE 517
Query: 351 FDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS 382
+ ++ + P N T E+ P R+
Sbjct: 518 HEVATTVNQNGPENTTKKVMEQKEEESPEERN 549
Score = 37 (18.1 bits), Expect = 2.2e-43, Sum P(3) = 2.2e-43
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 748 KDSERARSYIPRHPAVTP 765
K++ER+ S P H A P
Sbjct: 317 KETERSPSSSPIHNATKP 334
>UNIPROTKB|H7C148 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 Pfam:PF04065 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C148 Ensembl:ENST00000440571 Uniprot:H7C148
Length = 375
Score = 375 (137.1 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 123/380 (32%), Positives = 172/380 (45%)
Query: 81 RKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQID 140
RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +K K E WL N + L Q+D
Sbjct: 2 RKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQWLTNTIDTLNMQVD 61
Query: 141 SFEAELEGLTV----KKGKT--RPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQ 194
FE+E+E L+V KKG + R+ L+ I +H+ H+ LE ILR+LDND + +
Sbjct: 62 QFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDA 121
Query: 195 VNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGXXXXX 253
+ +KD +E YV+ +QD DFEE + LY L L+ + + LV PP
Sbjct: 122 IRKIKDDVEYYVDSSQDPDFEEN---EFLYDDLDLEDIP--QALVATSPPSHSHMEDEIF 176
Query: 254 XXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAK--SSGVGSTA 311
+ + + T+ E ED + ++D PAK S V S
Sbjct: 177 NQSSSTPTSTTSSSPIPPSPANCTT--ENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQ 234
Query: 312 --STPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSST 369
+PAV P P S PA ++A +T+P G + GP +S P + + +
Sbjct: 235 HPQSPAVPPTYP-SGPPPA---ASALSTTPGNNGVPAPAAPPSALGPKASPAPSHNSGTP 290
Query: 370 KEEDVGNFPGRRSSPSLTD-----VRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPL 424
P S PS T V+ G GG ++A G
Sbjct: 291 APYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATS 350
Query: 425 VSDVAKRNILGAEERLGSSG 444
S V + AE L SSG
Sbjct: 351 YSSVVADS--PAEVALSSSG 368
>UNIPROTKB|H0Y5X7 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H0Y5X7 Ensembl:ENST00000457463 Uniprot:H0Y5X7
Length = 288
Score = 340 (124.7 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 64/117 (54%), Positives = 79/117 (67%)
Query: 729 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 788
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 142 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 199
Query: 789 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQ 845
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQ
Sbjct: 200 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQ 253
Score = 41 (19.5 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 570 SAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSS 604
SA A G G APG + + P P++ SS
Sbjct: 5 SAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPSS 39
Score = 37 (18.1 bits), Expect = 4.0e-31, Sum P(2) = 4.0e-31
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 542 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 582
G L G QFS+ + S S++ +A + G++ P
Sbjct: 51 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 91
>UNIPROTKB|H7C3F5 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 Pfam:PF04065 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C3F5 Ensembl:ENST00000447684 Uniprot:H7C3F5
Length = 106
Score = 213 (80.0 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 40/75 (53%), Positives = 52/75 (69%)
Query: 83 LIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSF 142
LIE +MERFK+ E+ETKTKA+SKEGLG K DP +K K E WL N + L Q+D F
Sbjct: 2 LIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQWLTNTIDTLNMQVDQF 61
Query: 143 EAELEGLTVKKGKTR 157
E+E+E L+V+ K +
Sbjct: 62 ESEVESLSVQTRKKK 76
>UNIPROTKB|H7C5J4 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C5J4 Ensembl:ENST00000471126 Bgee:H7C5J4
Uniprot:H7C5J4
Length = 88
Score = 195 (73.7 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 45/83 (54%), Positives = 48/83 (57%)
Query: 808 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQ-GTYVYFDFHIANDDLQ----- 861
QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQ ++ A Q
Sbjct: 2 QYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQIPDHLLVHSLTAFSPGQGTYIY 61
Query: 862 ---HGWCQRIKTEFTFEYNYLED 881
W QR K FTFEY YLED
Sbjct: 62 FDYEKWGQRKKEGFTFEYRYLED 84
>CGD|CAL0005191 [details] [associations]
symbol:orf19.6075 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030015 "CCR4-NOT core complex" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA] [GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0051726 "regulation of cell
cycle" evidence=IEA] [GO:0000749 "response to pheromone involved in
conjugation with cellular fusion" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 CGD:CAL0005191 GO:GO:0005634
GO:GO:0006355 EMBL:AACQ01000036 EMBL:AACQ01000035 eggNOG:COG5601
HOGENOM:HOG000246523 KO:K12605 RefSeq:XP_718935.1
RefSeq:XP_719037.1 STRING:Q5AB95 GeneID:3639296 GeneID:3639453
KEGG:cal:CaO19.13496 KEGG:cal:CaO19.6075 Uniprot:Q5AB95
Length = 182
Score = 157 (60.3 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 787 LDSYGTDTLFFAFYYQ-QNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEF 843
+ ++ +TLF+ FY + ++T Q+Y AA+EL ++WRYH+ W + EP + N +
Sbjct: 95 IQNFTDETLFYIFYMKPRDTLQEY-AARELVARNWRYHKGIQVWLTKDSNVEPVLINPDV 153
Query: 844 EQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE 880
E+G Y++FD H W ++IK EF Y+ ++
Sbjct: 154 EKGVYIFFD--------PHNW-EKIKKEFVLHYSLVQ 181
>UNIPROTKB|F1MID5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000001285 EMBL:DAAA02013212 EMBL:DAAA02013213
EMBL:DAAA02013214 EMBL:DAAA02013215 IPI:IPI00905002
UniGene:Bt.30639 Ensembl:ENSBTAT00000057053 ArrayExpress:F1MID5
Uniprot:F1MID5
Length = 403
Score = 153 (58.9 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 297 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 356
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 357 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 386
Score = 59 (25.8 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 31/112 (27%), Positives = 43/112 (38%)
Query: 280 QEQGEDTASQDSNSDVAARTPPAKSSGVGSTAS--TPAVGPATPISI-----NVPAQTLS 332
Q+ G + + SD A + G G+ P G A + + N +Q S
Sbjct: 78 QQNGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFS 137
Query: 333 NASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEEDVGNFPGRRSS 383
+ P LPGSS N S+ + TSST D FPG +SS
Sbjct: 138 IHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST---DGPKFPGDKSS 186
>UNIPROTKB|F1SH40 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:CU467026
Ensembl:ENSSSCT00000000541 Uniprot:F1SH40
Length = 541
Score = 154 (59.3 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 41/123 (33%), Positives = 58/123 (47%)
Query: 761 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 820
P + P Y IV A + L YG D LF+ +Y Q LAA EL + W
Sbjct: 414 PFLMPIEYVTTVIHIVFQLA---AIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDW 470
Query: 821 RYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNY 878
RYH++ W R EP + + +E+GTY +FD N W +++ EF EY+
Sbjct: 471 RYHKEERVWITRAPGMEPTMKTNTYERGTYYFFD--CLN------W-RKVAKEFHLEYDK 521
Query: 879 LED 881
LE+
Sbjct: 522 LEE 524
Score = 61 (26.5 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 467 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 523
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 524 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 583
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 584 MNSVTSASLQQQP-NPIHQQSSQQ 606
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 59 (25.8 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 24/70 (34%), Positives = 30/70 (42%)
Query: 314 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEED 373
P VG T + N +Q S + P LPGSS N S+ TSS+ D
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTSSST--D 313
Query: 374 VGNFPGRRSS 383
FPG +SS
Sbjct: 314 GPKFPGDKSS 323
Score = 41 (19.5 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 295 VAARTPPAKSSGVGSTA-STPAV 316
+ +RT SSG+GS + S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPSRSSPSI 173
Score = 37 (18.1 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 98 TKTKAFSKEGLGQQPKTDP 116
++T + S GLG ++ P
Sbjct: 153 SRTNSMSSSGLGSPSRSSP 171
>SGD|S000002324 [details] [associations]
symbol:CDC36 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0051726 "regulation of cell cycle"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0031087 "deadenylation-independent decapping
of nuclear-transcribed mRNA" evidence=IMP] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0000749 "response to pheromone
involved in conjugation with cellular fusion" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IGI;IMP;IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IMP] [GO:0016567
"protein ubiquitination" evidence=IMP] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 SGD:S000002324
GO:GO:0005634 GO:GO:0005737 EMBL:BK006938 GO:GO:0016567
GO:GO:0000122 GO:GO:0051726 GO:GO:0006368 EMBL:Z67750 GO:GO:0032968
GO:GO:0000289 GO:GO:0030015 eggNOG:COG5601 HOGENOM:HOG000246523
KO:K12605 GeneTree:ENSGT00390000001285 GO:GO:0031087 EMBL:X03246
EMBL:X68020 GO:GO:0000749 OrthoDB:EOG4TB7MJ EMBL:X04287 EMBL:Z74213
EMBL:AY557644 PIR:S12304 RefSeq:NP_010116.1
ProteinModelPortal:P06100 DIP:DIP-590N IntAct:P06100
MINT:MINT-400720 STRING:P06100 PaxDb:P06100 PeptideAtlas:P06100
EnsemblFungi:YDL165W GeneID:851389 KEGG:sce:YDL165W CYGD:YDL165w
OMA:WAETSRS NextBio:968543 Genevestigator:P06100 GermOnline:YDL165W
Uniprot:P06100
Length = 191
Score = 143 (55.4 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 50/153 (32%), Positives = 77/153 (50%)
Query: 713 IGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYI-PRHPAVTPPSY--- 768
+G LS S G D + ++L++ ++ P +E +RS + PR TP S+
Sbjct: 30 LGADLSSMLYSLGIPRDSQ-DHRVLDT--FQSPW---AETSRSEVEPRF--FTPESFTNI 81
Query: 769 PQVQAPIVSNPAF------WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRY 822
P V V+ P F +R++L + +TLFF FY T Q L EL+K++WRY
Sbjct: 82 PGVLQSTVTPPCFNSIQNDQQRVAL--FQDETLFFLFYKHPGTVIQELTYLELRKRNWRY 139
Query: 823 HRKYNTWFQRHE--EPKVANDEF-EQGTYVYFD 852
H+ W + EP V+ D E+G+YV+FD
Sbjct: 140 HKTLKAWLTKDPMMEPIVSADGLSERGSYVFFD 172
>MGI|MGI:1919318 [details] [associations]
symbol:Cnot2 "CCR4-NOT transcription complex, subunit 2"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001226 "RNA polymerase II transcription corepressor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010606 "positive
regulation of cytoplasmic mRNA processing body assembly"
evidence=ISO] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:2000036 "regulation of stem
cell maintenance" evidence=ISO] InterPro:IPR007282 Pfam:PF04153
MGI:MGI:1919318 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 CTD:4848 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
ChiTaRS:CNOT2 EMBL:AK011231 EMBL:AK078121 EMBL:AK149767
EMBL:BC043133 EMBL:BC063105 EMBL:BC065171 IPI:IPI00132821
IPI:IPI00410747 IPI:IPI00410748 RefSeq:NP_001032935.2
RefSeq:NP_001032936.2 RefSeq:NP_001032937.1 RefSeq:NP_082358.2
UniGene:Mm.351553 ProteinModelPortal:Q8C5L3 STRING:Q8C5L3
PhosphoSite:Q8C5L3 PaxDb:Q8C5L3 PRIDE:Q8C5L3
Ensembl:ENSMUST00000105265 Ensembl:ENSMUST00000105267
Ensembl:ENSMUST00000169921 GeneID:72068 KEGG:mmu:72068
UCSC:uc007hca.2 UCSC:uc007hcb.2 UCSC:uc007hcd.2
GeneTree:ENSGT00390000001285 InParanoid:Q8C5L3 NextBio:335352
Bgee:Q8C5L3 CleanEx:MM_CNOT2 Genevestigator:Q8C5L3
GermOnline:ENSMUSG00000020166 Uniprot:Q8C5L3
Length = 540
Score = 153 (58.9 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 467 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 523
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 524 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 583
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 584 MNSVTSASLQQQP-NPIHQQSSQQ 606
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 60 (26.2 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 314 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 372
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 312
Query: 373 DVGNFPGRRSS 383
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 40 (19.1 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 295 VAARTPPAKSSGVGS-TASTPAV 316
+ +RT SSG+GS S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPNRSSPSI 173
>UNIPROTKB|E2QSF5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
CTD:4848 KO:K12605 OMA:TQDFSIH GeneTree:ENSGT00390000001285
EMBL:AAEX03007054 EMBL:AAEX03007055 RefSeq:XP_850576.1
Ensembl:ENSCAFT00000000701 GeneID:474446 KEGG:cfa:474446
NextBio:20850458 Uniprot:E2QSF5
Length = 540
Score = 153 (58.9 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 467 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 523
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 524 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 583
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 584 MNSVTSASLQQQP-NPIHQQSSQQ 606
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 57 (25.1 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 314 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 372
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 373 DVGNFPGRRSS 383
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 40 (19.1 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 295 VAARTPPAKSSGVGS-TASTPAV 316
+ +RT SSG+GS S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPNRSSPSI 173
>UNIPROTKB|Q9NZN8 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=TAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=NAS] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0010606 "positive regulation
of cytoplasmic mRNA processing body assembly" evidence=IMP]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0001226 "RNA polymerase
II transcription corepressor binding" evidence=IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:2000036 "regulation of stem cell
maintenance" evidence=IMP] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR007282
Pfam:PF04153 GO:GO:0005829 GO:GO:0005634 GO:GO:0000289
GO:GO:0001104 EMBL:AF180473 EMBL:AF113226 EMBL:AF161480
EMBL:AK000662 EMBL:AL137674 EMBL:BX641116 EMBL:BC002597
EMBL:BC011826 EMBL:AF044215 IPI:IPI00005011 IPI:IPI00017733
IPI:IPI00410621 IPI:IPI00410622 IPI:IPI00410623 PIR:T46494
RefSeq:NP_001186231.1 RefSeq:NP_001186232.1 RefSeq:NP_055330.1
UniGene:Hs.133350 UniGene:Hs.730666 ProteinModelPortal:Q9NZN8
DIP:DIP-42656N IntAct:Q9NZN8 MINT:MINT-1438957 STRING:Q9NZN8
PhosphoSite:Q9NZN8 DMDM:46396017 PaxDb:Q9NZN8 PRIDE:Q9NZN8
DNASU:4848 Ensembl:ENST00000229195 Ensembl:ENST00000418359
Ensembl:ENST00000551043 Ensembl:ENST00000551483 GeneID:4848
KEGG:hsa:4848 UCSC:uc001svv.3 UCSC:uc001svw.1 CTD:4848
GeneCards:GC12P070636 HGNC:HGNC:7878 MIM:604909 neXtProt:NX_Q9NZN8
PharmGKB:PA26673 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 InParanoid:Q9NZN8 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV PhylomeDB:Q9NZN8 ChiTaRS:CNOT2 GenomeRNAi:4848
NextBio:18670 ArrayExpress:Q9NZN8 Bgee:Q9NZN8 CleanEx:HS_CNOT2
Genevestigator:Q9NZN8 GermOnline:ENSG00000111596 Uniprot:Q9NZN8
Length = 540
Score = 153 (58.9 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 467 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 523
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 524 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 583
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 584 MNSVTSASLQQQP-NPIHQQSSQQ 606
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 57 (25.1 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 314 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 372
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 373 DVGNFPGRRSS 383
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 40 (19.1 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 295 VAARTPPAKSSGVGS-TASTPAV 316
+ +RT SSG+GS S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPNRSSPSI 173
>UNIPROTKB|F1LUT7 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00734620 Ensembl:ENSRNOT00000058355
ArrayExpress:F1LUT7 Uniprot:F1LUT7
Length = 549
Score = 153 (58.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 443 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 502
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 503 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 532
Score = 61 (26.5 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 467 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 523
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 14 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 73
Query: 524 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 583
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 74 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 129
Query: 584 MNSVTSASLQQQP-NPIHQQSSQQ 606
+++ S S P NP + + Q
Sbjct: 130 LHTPPSPSRGILPMNPRNMMNHSQ 153
Score = 60 (26.2 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 314 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 372
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 266 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 321
Query: 373 DVGNFPGRRSS 383
D FPG +SS
Sbjct: 322 DGPKFPGDKSS 332
Score = 40 (19.1 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 295 VAARTPPAKSSGVGS-TASTPAV 316
+ +RT SSG+GS S+P++
Sbjct: 160 IPSRTNSMSSSGLGSPNRSSPSI 182
>UNIPROTKB|H0YHT6 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7878 ChiTaRS:CNOT2 EMBL:AC025569
EMBL:AC092881 Ensembl:ENST00000551710 Bgee:H0YHT6 Uniprot:H0YHT6
Length = 104
Score = 142 (55.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 17 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 76
Query: 843 FEQGTYVYFD 852
+E+GTY +FD
Sbjct: 77 YERGTYYFFD 86
>UNIPROTKB|F1M3V0 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00949675 Ensembl:ENSRNOT00000064732
ArrayExpress:F1M3V0 Uniprot:F1M3V0
Length = 493
Score = 153 (58.9 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 387 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 446
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 447 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 476
Score = 60 (26.2 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 314 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 372
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 210 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 265
Query: 373 DVGNFPGRRSS 383
D FPG +SS
Sbjct: 266 DGPKFPGDKSS 276
Score = 54 (24.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 536 GHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ 595
G + LG+P+ G S P L + SQG+ + + GV +++ S S
Sbjct: 30 GQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGIL 85
Query: 596 P-NPIHQQSSQQ 606
P NP + + Q
Sbjct: 86 PMNPRNMMNHSQ 97
Score = 40 (19.1 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 295 VAARTPPAKSSGVGS-TASTPAV 316
+ +RT SSG+GS S+P++
Sbjct: 104 IPSRTNSMSSSGLGSPNRSSPSI 126
>UNIPROTKB|F1LY92 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00366212 Ensembl:ENSRNOT00000006779
ArrayExpress:F1LY92 Uniprot:F1LY92
Length = 531
Score = 153 (58.9 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 425 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 484
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 485 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 514
Score = 60 (26.2 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 314 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 372
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 248 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 303
Query: 373 DVGNFPGRRSS 383
D FPG +SS
Sbjct: 304 DGPKFPGDKSS 314
Score = 56 (24.8 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 488 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 547
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 20 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 79
Query: 548 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 606
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 80 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 135
Score = 40 (19.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 295 VAARTPPAKSSGVGS-TASTPAV 316
+ +RT SSG+GS S+P++
Sbjct: 142 IPSRTNSMSSSGLGSPNRSSPSI 164
>UNIPROTKB|F8VV52 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 IPI:IPI00017733 HGNC:HGNC:7878 ChiTaRS:CNOT2
EMBL:AC025569 EMBL:AC092881 PRIDE:F8VV52 Ensembl:ENST00000548159
ArrayExpress:F8VV52 Bgee:F8VV52 Uniprot:F8VV52
Length = 531
Score = 153 (58.9 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 425 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 484
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 485 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 514
Score = 57 (25.1 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 314 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 372
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 248 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 303
Query: 373 DVGNFPGRRSS 383
D FPG +SS
Sbjct: 304 DGPKFPGDKSS 314
Score = 56 (24.8 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 488 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 547
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 20 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 79
Query: 548 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 606
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 80 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 135
Score = 40 (19.1 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 295 VAARTPPAKSSGVGS-TASTPAV 316
+ +RT SSG+GS S+P++
Sbjct: 142 IPSRTNSMSSSGLGSPNRSSPSI 164
>UNIPROTKB|E1BCE7 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:DAAA02013212
EMBL:DAAA02013213 EMBL:DAAA02013214 EMBL:DAAA02013215
IPI:IPI00692269 Ensembl:ENSBTAT00000004880 ArrayExpress:E1BCE7
Uniprot:E1BCE7
Length = 540
Score = 153 (58.9 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 57 (25.1 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 314 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 372
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 373 DVGNFPGRRSS 383
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 56 (24.8 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 488 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 547
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 29 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 88
Query: 548 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 606
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 89 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 40 (19.1 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 295 VAARTPPAKSSGVGS-TASTPAV 316
+ +RT SSG+GS S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPNRSSPSI 173
>ZFIN|ZDB-GENE-070410-70 [details] [associations]
symbol:zgc:162316 "zgc:162316" species:7955 "Danio
rerio" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 ZFIN:ZDB-GENE-070410-70
GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
GeneTree:ENSGT00390000001285 EMBL:CR376836 EMBL:CR382363
EMBL:BC134959 IPI:IPI00799285 RefSeq:NP_001082993.1
UniGene:Dr.78739 STRING:A4QN63 Ensembl:ENSDART00000088383
GeneID:100037372 KEGG:dre:100037372 InParanoid:A4QN63
NextBio:20788534 Uniprot:A4QN63
Length = 520
Score = 162 (62.1 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 414 IKLGRYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNT 473
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+E+GTY +FD H W +++ EF EY+ LE+
Sbjct: 474 YERGTYYFFDCH--------NW-RKVAKEFHLEYDKLEE 503
Score = 46 (21.3 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 39/192 (20%), Positives = 70/192 (36%)
Query: 299 TPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVF--DNTGP 356
+P SSG S GP + + ++ SN +P L S +G ++ P
Sbjct: 40 SPSPSSSGQLSQLGASLYGPQSALGFSIRGM-----SNNNPQL-NRSLTQGTQLPSHSTP 93
Query: 357 ISSSPPVNLTSSTKEEDVGNFP-GRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPS 415
+ P ++L ++ + G P R+ S + MG G + PS
Sbjct: 94 TTGVPTMSLHTTPPSPNRGILPMNTRNMMSSQVGQGMGMSGRTNSMGSSGLGSPNRSSPS 153
Query: 416 NGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSL-VSPLSNRMILSQAAKGNDGTGSIDS 474
+ +P + + + G G Q ++ LSN + G DG+ ++
Sbjct: 154 ---IICMPKQQPARQPFTINSMSGFGM-GRSQGFGMNSLSNNIF-----NGTDGSENVTG 204
Query: 475 NNAGETVAMAGR 486
+ E A+A R
Sbjct: 205 IDLSEFPALADR 216
Score = 42 (19.8 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 22/123 (17%), Positives = 48/123 (39%)
Query: 490 PSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNK 549
P M + + FQ+++E + + Q + G + LG + G
Sbjct: 17 PDESMYYNQASMFQHRSEKDMLPSPSPSSSGQLSQLGASLY-----GPQSALGFSIRG-- 69
Query: 550 QFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLM 609
S NP L + +QG+ + + + GV +++ T S + P++ ++ + +
Sbjct: 70 --MSNNNPQLNRSLTQGTQLPSHSTPTTGVPTMSLHT-TPPSPNRGILPMNTRNMMSSQV 126
Query: 610 SGG 612
G
Sbjct: 127 GQG 129
>UNIPROTKB|Q5ZKI3 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR007282
Pfam:PF04153 GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601
HOGENOM:HOG000246523 HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV GeneTree:ENSGT00390000001285 EMBL:AADN02009856
EMBL:AJ720101 IPI:IPI00592451 RefSeq:NP_001012826.1
UniGene:Gga.50456 UniGene:Gga.9400 STRING:Q5ZKI3
Ensembl:ENSGALT00000016314 GeneID:417851 KEGG:gga:417851
InParanoid:Q5ZKI3 NextBio:20821090 Uniprot:Q5ZKI3
Length = 520
Score = 153 (58.9 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 414 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 473
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 474 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 503
Score = 54 (24.1 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 536 GHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ 595
G + LG+P+ G S P L + SQG+ + + GV +++ S S
Sbjct: 57 GQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGIL 112
Query: 596 P-NPIHQQSSQQ 606
P NP + + Q
Sbjct: 113 PMNPRNMMNHSQ 124
Score = 54 (24.1 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 25/71 (35%), Positives = 30/71 (42%)
Query: 314 PAVGPAT-PISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEE 372
P VG T P S +Q S + P LPGSS N S+ TSS+
Sbjct: 237 PYVGMVTKPASEQ--SQDFSIHNEDFPALPGSSYKDPTSSNDDNKSNLNTSGKTSSST-- 292
Query: 373 DVGNFPGRRSS 383
D FPG +SS
Sbjct: 293 DGPKFPGDKSS 303
Score = 40 (19.1 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 295 VAARTPPAKSSGVGS-TASTPAV 316
+ +RT SSG+GS S+P++
Sbjct: 131 IPSRTNSMSSSGLGSPNRSSPSI 153
>RGD|1311672 [details] [associations]
symbol:Cnot2 "CCR4-NOT transcription complex, subunit 2"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001226 "RNA polymerase II transcription corepressor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0010606 "positive regulation of
cytoplasmic mRNA processing body assembly" evidence=ISO]
[GO:0030014 "CCR4-NOT complex" evidence=ISO] [GO:0033147 "negative
regulation of intracellular estrogen receptor signaling pathway"
evidence=ISO] [GO:2000036 "regulation of stem cell maintenance"
evidence=ISO] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=ISO] InterPro:IPR007282 Pfam:PF04153 RGD:1311672
GO:GO:0005634 GO:GO:0006355 CTD:4848 eggNOG:COG5601
HOGENOM:HOG000246523 HOVERGEN:HBG051041 KO:K12605
GeneTree:ENSGT00390000001285 EMBL:BC087653 IPI:IPI00952054
RefSeq:NP_001011988.1 UniGene:Rn.99836 STRING:Q5PPJ8
Ensembl:ENSRNOT00000066396 GeneID:299805 KEGG:rno:299805
UCSC:RGD:1311672 InParanoid:Q5PPJ8 NextBio:645798
Genevestigator:Q5PPJ8 Uniprot:Q5PPJ8
Length = 429
Score = 142 (55.0 bits), Expect = 9.8e-08, Sum P(3) = 9.8e-08
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 349 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 408
Query: 843 FEQGTYVYFD 852
+E+GTY +FD
Sbjct: 409 YERGTYYFFD 418
Score = 60 (26.2 bits), Expect = 9.8e-08, Sum P(3) = 9.8e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 314 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 372
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 172 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 227
Query: 373 DVGNFPGRRSS 383
D FPG +SS
Sbjct: 228 DGPKFPGDKSS 238
Score = 40 (19.1 bits), Expect = 9.8e-08, Sum P(3) = 9.8e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 295 VAARTPPAKSSGVGS-TASTPAV 316
+ +RT SSG+GS S+P++
Sbjct: 66 IPSRTNSMSSSGLGSPNRSSPSI 88
Score = 39 (18.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 553 SQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 606
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 5 SNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 59
>UNIPROTKB|Q52JK6 [details] [associations]
symbol:VIP2 "Probable NOT transcription complex subunit
VIP2" species:4100 "Nicotiana benthamiana" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0015074 "DNA integration" evidence=IMP]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 GO:GO:0015074 EMBL:DQ000202 Uniprot:Q52JK6
Length = 603
Score = 154 (59.3 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 38/122 (31%), Positives = 56/122 (45%)
Query: 733 NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGT 792
N+ E+ + P E A+ P T P + P N A++ + LD
Sbjct: 463 NLNSAENLYKTFGSPWSDEPAKG----DPEFTVPQCYYAKQPPPLNQAYFSKFQLD---- 514
Query: 793 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR--HEEPKVANDEFEQGTYVY 850
TLF+ FY Q AA EL + W YHR++ WF R + EP V + +E+G+Y+
Sbjct: 515 -TLFYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYIC 573
Query: 851 FD 852
FD
Sbjct: 574 FD 575
Score = 45 (20.9 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 39/157 (24%), Positives = 59/157 (37%)
Query: 362 PVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXAT--AVPSNGN- 418
P NL S+ + GN G S V+G G + GN
Sbjct: 34 PNNLPSALSQIPQGNSHGHSGMTSRGGTSVVGNPGYSSNTNGVGGSIPGILPTFAAIGNR 93
Query: 419 -----LGAVPLVSDVAKR------NILGAEE--RLGSSGMVQSLVSPLSNRMILSQAAKG 465
LG P++ + R NI+G R SSG S V L++R+ ++
Sbjct: 94 SSVPGLGVSPILGNAGPRMTNSVGNIVGGGNIGRSISSGAGLS-VPGLASRLNMN----A 148
Query: 466 NDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSF 502
N G+G++ N G M+G + S + GNS+
Sbjct: 149 NSGSGNL--NVQGPNRLMSGVLQQASPQVLSMLGNSY 183
Score = 43 (20.2 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 566 GSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSG 611
G +I G G+ PG+ S + + ++ Q + LMSG
Sbjct: 122 GGNIGRSISSGAGLSVPGLASRLNMNANSGSGNLNVQGPNR-LMSG 166
>DICTYBASE|DDB_G0289701 [details] [associations]
symbol:DDB_G0289701 "ezrin/radixin/moesin C-terminal
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0016020 "membrane" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0005215 "transporter activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR014161
InterPro:IPR015943 dictyBase:DDB_G0289701 GO:GO:0016020
Gene3D:2.130.10.10 GO:GO:0005215 EMBL:AAFI02000148 eggNOG:NOG12793
TIGRFAMs:TIGR02794 RefSeq:XP_636066.1 PRIDE:Q54H52
EnsemblProtists:DDB0235251 GeneID:8627276 KEGG:ddi:DDB_G0289701
InParanoid:Q54H52 OMA:ENYRHEV Uniprot:Q54H52
Length = 1704
Score = 103 (41.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 70/312 (22%), Positives = 103/312 (33%)
Query: 283 GEDTASQDSNSDVAARTPPAKSSGVGSTASTPAV-GPATPI----SINVPAQTLSNASNT 337
G A Q S+ + +P +S GST++TP+V G + S P + +S+T
Sbjct: 1393 GAKPAPQTSSVFGSTSSPSTTTSAFGSTSTTPSVFGNTSAFGGGGSTTTPTTSAFGSSST 1452
Query: 338 SPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGX 397
+P G+ + G T S+P TS+ F G + S G
Sbjct: 1453 TPAFGGTPAF-GSAPTTSAFGSAPTTT-TSAFGSSSTPAFGGTSAFGSAPTTSAFGSTPA 1510
Query: 398 XXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGA------EERLGSSGMVQSLVS 451
+ P+ G+ P GA GS+ + S
Sbjct: 1511 TGAFGSAPTTSAFGSTPATSAFGSTPTTGAFGSTPTTGAFGSTPTTSAFGSTPTTGAFGS 1570
Query: 452 PLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQF 511
+ S +A G+ T S A T A G TP+ G T ++F + + P F
Sbjct: 1571 TPTTSAFGSTSAFGSTPTTSA-FGGAPTTNAF-GSSSTPAFGST-PTTSAFGSSSTPA-F 1626
Query: 512 RGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMP----LGGNKQF-SSQQNPLLQQFNSQG 566
G + G S P GG F S+ P F SQ
Sbjct: 1627 GGTSAFGGAPTTSAFGSSSTPAFGGTSAFGSTPTTSAFGGGSVFGSTSSQPTSSVFGSQF 1686
Query: 567 SSISAQAGLGLG 578
S SA + LG
Sbjct: 1687 GSNSAPSFASLG 1698
Score = 100 (40.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 39/136 (28%), Positives = 70/136 (51%)
Query: 26 DSIWNKVYDTDNA--NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKL 83
+S++ K D + ++EK E + ++ KL+R + K Q+ E+KDK +A++
Sbjct: 1111 NSLFTKNLDLEKEAKERQEKIERETRELQDKLEREEREAKEK-QARELKDKLER-EAKEK 1168
Query: 84 IEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSE-LESQI-DS 141
RE++ + E+E K KA KE +Q + + KEKA+ E R+ + E LE + +
Sbjct: 1169 QARELKEKQ--EREAKEKA-EKEANEKQER-EAKEKAEKEAREKIEKEAKEKLEREAKEK 1224
Query: 142 FEAELEGLTVKKGKTR 157
E E + K+ K +
Sbjct: 1225 LEREAKEKAEKEAKEK 1240
Score = 86 (35.3 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 34/140 (24%), Positives = 74/140 (52%)
Query: 4 SRKLQGEIDRVLKKVQE--GVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQ 61
+R+LQ +++R ++ +E ++ D + + + KEK E + K++ +K + +
Sbjct: 1135 TRELQDKLEREEREAKEKQARELKDKLEREAKEKQARELKEKQEREAKEKAEKEANEKQE 1194
Query: 62 IKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAF--SKEGLGQQPKT----D 115
+ ++ + +K +A++ +ERE + K+ E+E K KA +KE L ++ K +
Sbjct: 1195 REAKEKAEKEAREKIEKEAKEKLEREAKE-KL-EREAKEKAEKEAKEKLEKEAKEKLEKE 1252
Query: 116 PKEKAKSETRDWLNNLVSEL 135
KEKA+ ++ + NN + L
Sbjct: 1253 AKEKAEKDSAN-ANNALGAL 1271
Score = 77 (32.2 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 33/137 (24%), Positives = 71/137 (51%)
Query: 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLK-KEIKKLQRYRDQI 62
+++ Q +I+R +++Q+ ++ + + + K+K E + K K+ ++L+ +++
Sbjct: 1124 AKERQEKIERETRELQDKLEREE---REAKEKQARELKDKLEREAKEKQARELKEKQERE 1180
Query: 63 KTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKS 122
E +K+ +A++ E+E R KI EKE K K +E ++ + + KEKA+
Sbjct: 1181 AKEKAEKEANEKQER-EAKEKAEKEA-REKI-EKEAKEK-LEREAK-EKLEREAKEKAEK 1235
Query: 123 ETRDWLNNLVSE-LESQ 138
E ++ L E LE +
Sbjct: 1236 EAKEKLEKEAKEKLEKE 1252
>TAIR|locus:505006107 [details] [associations]
symbol:NOT2a "Negative on TATA less2a" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR007282 Pfam:PF04153 EMBL:CP002684 GO:GO:0005634
GO:GO:0006355 EMBL:AC007583 eggNOG:COG5601 KO:K12605
HOGENOM:HOG000005739 IPI:IPI00852321 RefSeq:NP_001077478.1
UniGene:At.42289 PaxDb:A8MR45 PRIDE:A8MR45
EnsemblPlants:AT1G07705.2 GeneID:837284 KEGG:ath:AT1G07705
TAIR:At1g07705 InParanoid:A8MR45 OMA:RMNDADL PhylomeDB:A8MR45
ProtClustDB:CLSN2693279 Genevestigator:A8MR45 Uniprot:A8MR45
Length = 614
Score = 134 (52.2 bits), Expect = 7.1e-06, Sum P(3) = 7.1e-06
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 761 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 820
P+ P + Q NP + +TLF+ FY Q AA EL + W
Sbjct: 492 PSKVDPEFSVPQCYYAKNPPPLHQGLFAKLLVETLFYVFYSMPKDEAQLYAANELYNRGW 551
Query: 821 RYHRKYNTWFQRHEEPKVANDEFEQGTYVYFD 852
YH+++ WF R EP V + +E+G+Y FD
Sbjct: 552 FYHKEHRLWFIRIGEPLVKTNAYERGSYHCFD 583
Score = 53 (23.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 68/297 (22%), Positives = 101/297 (34%)
Query: 323 SINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS 382
S N+P LS S+ GSS N G + SP + S +GN G
Sbjct: 93 SSNIPV-ALSQMSH------GSSHGHSGLTNRGGLGVSPILGNVGSRMTSSMGNMVGGG- 144
Query: 383 SPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGS 442
T R + GG A S GN+G ++ V + LG+
Sbjct: 145 ----TMGRTLSSGGGLSIPSLGSRLNLAVNSGS-GNIGQNRMMGGVLPQGSPQVLSMLGN 199
Query: 443 S-----GMVQSLVSPLSN--RMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQ 495
S G+ Q+ V +++ M L ND T D NN + + R S G Q
Sbjct: 200 SYPSAGGLSQNHVQAMNSLSSMGLLNDMNSND-TSPFDINN--DFPQLTSR--PSSAGSQ 254
Query: 496 WRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHS-NLLGMPLGGNKQFSSQ 554
+ G+ + Q G + I +E G+ + P+ + +
Sbjct: 255 GQLGSRLK------QGLGISPIVQQNQEFSIQNEDFPALPGYKGSSADYPMDLHHKEQLH 308
Query: 555 QNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSG 611
+N +L SQ S+ G LG + TS QQQ SS + G
Sbjct: 309 ENSVLMM-QSQQLSMGRSGGFNLG------GAYTSHRPQQQQQHAQAVSSSGVSLHG 358
Score = 51 (23.0 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 702 IGRRSVSDLG-AIGDSLSGATVSSGG 726
+G R S +G +G G T+SSGG
Sbjct: 129 VGSRMTSSMGNMVGGGTMGRTLSSGG 154
Score = 50 (22.7 bits), Expect = 7.1e-06, Sum P(3) = 7.1e-06
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 542 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ--PNPI 599
G+ L G+ FSS P ++SQ G+GL NS+T QQ
Sbjct: 353 GVSLHGSDIFSSSHPP----YHSQ---TGGAPGIGLR-SMNSANSITGMGYDQQLIQQYQ 404
Query: 600 HQQSSQQ 606
HQQ+S Q
Sbjct: 405 HQQNSAQ 411
Score = 47 (21.6 bits), Expect = 7.1e-06, Sum P(3) = 7.1e-06
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 304 SSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP-GSSSVRGVFDNTGP 356
SSG G S P++G +++N + + VLP GS V + N+ P
Sbjct: 151 SSGGG--LSIPSLGSRLNLAVNSGSGNIGQNRMMGGVLPQGSPQVLSMLGNSYP 202
Score = 44 (20.5 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 563 NSQGS-SISAQAGLGLGVQAPGMNSVTSASLQQQPNPI 599
N G+ ++ AG LG + +N V SA +QQQ I
Sbjct: 50 NIHGNFNVPNLAG-SLGSRNSSLNGVPSAGVQQQNGSI 86
>FB|FBgn0017550 [details] [associations]
symbol:Rga "Regena" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IEA;NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0046331 "lateral inhibition" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR007282 Pfam:PF04153
EMBL:AE014297 GO:GO:0005634 GO:GO:0005737 GO:GO:0007095
GO:GO:0006355 GO:GO:0006351 GO:GO:0046331 EMBL:U75467 GO:GO:0030014
eggNOG:COG5601 KO:K12605 GeneTree:ENSGT00390000001285 EMBL:AY094772
EMBL:BT025208 RefSeq:NP_524239.2 RefSeq:NP_730966.1 UniGene:Dm.2486
STRING:Q94547 PaxDb:Q94547 PRIDE:Q94547 EnsemblMetazoa:FBtr0078741
GeneID:40683 KEGG:dme:Dmel_CG2161 UCSC:CG2161-RA CTD:40683
FlyBase:FBgn0017550 InParanoid:Q94547 OMA:KVTNIPA OrthoDB:EOG459ZWX
PhylomeDB:Q94547 ChiTaRS:Rga GenomeRNAi:40683 NextBio:820039
Bgee:Q94547 GermOnline:CG2161 Uniprot:Q94547
Length = 585
Score = 109 (43.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 793 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVY 850
D LFF FY Q +AA EL + WRYH + W R + N E+GT+ Y
Sbjct: 491 DLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGTFYY 550
Query: 851 FD 852
FD
Sbjct: 551 FD 552
Score = 77 (32.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 42/181 (23%), Positives = 65/181 (35%)
Query: 306 GVGSTASTPAVGPAT--PISINVPAQTLSNASNTSPVLP-GSSSVRGVFDNTGPISSSPP 362
G GS STPA+ T P N Q ++P+ P GS F + G +
Sbjct: 149 GGGSDTSTPALLDPTEFPSLTNARGQNDQTLPQSNPLQPPGSKPYGNFFTSFGMVKQPTS 208
Query: 363 VNLTSSTKEEDVGNFPGRRSSPSLTDV--RVMGRGGXXXXXXXXXXXXXATAVPSNGNLG 420
+ ED PG ++S T+ V G GG T P N ++
Sbjct: 209 EQSEFTMSNEDFPALPGTQNSDGTTNAVGSVAGTGGSGGASTENHLD--GTEKPMN-SIV 265
Query: 421 AVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGET 480
S + N+ G +G +G+ ++ S + + G+ G G + N A
Sbjct: 266 VSGSASGSSGSNV-GV---VGGNGL-GAVGSGIGGLAVGGGGGAGSSGGGGVGGNAASGV 320
Query: 481 V 481
V
Sbjct: 321 V 321
>TAIR|locus:2174259 [details] [associations]
symbol:VIP2 "VIRE2 interacting protein 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0015074 "DNA integration" evidence=IMP]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0006351 GO:GO:0015074
eggNOG:COG5601 KO:K12605 EMBL:AB006705 EMBL:AK117230 EMBL:AF295433
IPI:IPI00536853 RefSeq:NP_568912.2 UniGene:At.24144 PaxDb:Q9FPW4
PRIDE:Q9FPW4 EnsemblPlants:AT5G59710.1 GeneID:836092
KEGG:ath:AT5G59710 TAIR:At5g59710 HOGENOM:HOG000005739
InParanoid:Q9FPW4 OMA:PEYLINM PhylomeDB:Q9FPW4
Genevestigator:Q9FPW4 Uniprot:Q9FPW4
Length = 614
Score = 132 (51.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 29/92 (31%), Positives = 41/92 (44%)
Query: 761 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 820
PA + + + P R S + + LF+ FY Q AA EL ++ W
Sbjct: 495 PAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGW 554
Query: 821 RYHRKYNTWFQRHEEPKVANDEFEQGTYVYFD 852
YH++ WF R EP V +E+GTY Y D
Sbjct: 555 FYHKELRVWFFRVGEPLVRAATYERGTYEYLD 586
Score = 52 (23.4 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 46/192 (23%), Positives = 76/192 (39%)
Query: 330 TLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGN--FPGRR----SS 383
T N+S S G G F + S++ PVNL+ + G+ P R +
Sbjct: 64 TSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNRGLNVVGN 123
Query: 384 PSLTDVRVMGRGGXX-XXXXXXXXXXXATAVPSNGN---LG-AVPLVSDVAKRNILGAEE 438
P + G GG +VP G LG + P +++ + N++G
Sbjct: 124 PGFSS-NANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITN-SMGNMVGGGN 181
Query: 439 RLGSSGMVQSLVSP-LSNRMILSQAAKGNDGTG-SIDSNNA--GETVAMAGRVFTPSMGM 494
LG + L P LS+R+ L+ N G+G ++ N G + +V + +G
Sbjct: 182 -LGRNISSGGLSIPGLSSRLNLA----ANSGSGLNVQGQNRMMGGVLPQGSQVMS-MLGN 235
Query: 495 QWRTGNSFQNQN 506
+ TG +QN
Sbjct: 236 SYHTGGGPLSQN 247
Score = 43 (20.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 37/164 (22%), Positives = 57/164 (34%)
Query: 441 GSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGN 500
G SG+ ++ + N S A I S +AG ++ R P MG+ GN
Sbjct: 109 GHSGIPNRGLNVVGNPGFSSNANGVGGSIPGILSTSAG----LSNRNSVPGMGISQLLGN 164
Query: 501 SFQN-QNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQ-QNPL 558
S N G G + + G S+ L + + Q QN +
Sbjct: 165 SGPRITNSMGNMVGGGNLGRN------ISSGGLSIPGLSSRLNLAANSGSGLNVQGQNRM 218
Query: 559 LQQFNSQGSSISAQAG----LGLGVQAPG-MNSVTSASLQQQPN 597
+ QGS + + G G G + + SV + L PN
Sbjct: 219 MGGVLPQGSQVMSMLGNSYHTGGGPLSQNHVQSVNNMMLSDHPN 262
Score = 40 (19.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 584 MNSVTSASLQQQPN 597
MNS+ SA +QQ PN
Sbjct: 70 MNSIPSAGVQQ-PN 82
>DICTYBASE|DDB_G0284577 [details] [associations]
symbol:DDB_G0284577 "putative CCR4-NOT complex
subunit 2" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
InterPro:IPR007282 Pfam:PF04153 dictyBase:DDB_G0284577
GO:GO:0005634 GO:GO:0006355 GO:GO:0016567 EMBL:AAFI02000066
GO:GO:0030015 eggNOG:COG5601 KO:K12605 RefSeq:XP_638512.1
EnsemblProtists:DDB0237628 GeneID:8624662 KEGG:ddi:DDB_G0284577
OMA:HEEYQRK ProtClustDB:CLSZ2846720 Uniprot:Q54PG2
Length = 579
Score = 122 (48.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 774 PIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH 833
P + +P F +++L +Y +TLF+ FY Q AA EL + WRYH++ W R
Sbjct: 433 PNLESPTF--KMNLFTY--ETLFYIFYSMPKDVLQLHAAIELYDRDWRYHKEGKIWLTRV 488
Query: 834 E--EPKVANDEFEQGTYVYFDFHI 855
+ EP + + FE G++ +FD I
Sbjct: 489 QGTEPNITST-FEVGSFFFFDVTI 511
Score = 60 (26.2 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 29/119 (24%), Positives = 49/119 (41%)
Query: 500 NSFQNQNEPGQ---FRGRTE-IAPDQREKFXXXXXXXXXXG----HSNLLGMPLGGNKQF 551
N QNQN+ Q FRG+ + + Q + +SN+ GMP GGN
Sbjct: 52 NQQQNQNQQNQQQNFRGQNQNMMGGQNQNNNNNNSSNINNNRVGNNSNINGMPTGGNMAT 111
Query: 552 SSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMS 610
+ ++ N+ ++ + + P ++S++ QQ P P QQ Q +S
Sbjct: 112 NINNMNMMNNNNNTNNNNNGR---------P----ISSSNSQQPPPPPQQQQQPQQPLS 157
>POMBASE|SPCC4G3.15c [details] [associations]
symbol:not2 "CCR4-Not complex subunit Not2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=IC] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core
complex" evidence=ISO] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISO] InterPro:IPR007282 Pfam:PF04153 PomBase:SPCC4G3.15c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0006357 GO:GO:0000289 GO:GO:0030015 GO:GO:0006354
eggNOG:COG5601 HOGENOM:HOG000246523 PIR:T41361 RefSeq:NP_587823.2
STRING:P87240 EnsemblFungi:SPCC4G3.15c.1 GeneID:2538778
OrthoDB:EOG4TB7MJ NextBio:20799960 Uniprot:P87240
Length = 306
Score = 129 (50.5 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 37/120 (30%), Positives = 55/120 (45%)
Query: 765 PPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 824
P Y V P PA + + + +TLF+ FY Q AA+EL ++WR+H+
Sbjct: 196 PACYKNVNPP----PAISK---IFQFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHK 248
Query: 825 KYNTWFQRHE--EPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+ W +P +FE+G Y++FD H W +RIK +F Y LED
Sbjct: 249 ELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIH---------W-KRIKKDFLLMYAALED 298
>DICTYBASE|DDB_G0302588 [details] [associations]
symbol:DDB_G0302588 "RanBP2-type zinc finger"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001876 PROSITE:PS01358 SMART:SM00547
dictyBase:DDB_G0302588 GO:GO:0008270 EMBL:AAFI02000003
GO:GO:0005622 RefSeq:XP_002649209.1 EnsemblProtists:DDB0302589
GeneID:8616202 KEGG:ddi:DDB_G0302588 OMA:VKFESPA Uniprot:C7FZW3
Length = 3566
Score = 127 (49.8 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 51/199 (25%), Positives = 98/199 (49%)
Query: 30 NKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKA-LVDARKLIERE- 87
N +++ N +KE E D +E +L+ +D++K + + +KK V++ K E+E
Sbjct: 2654 NPTFESIN-KEKESVE-DKNQEKDELKDEKDELKDENEKKDENEKKEETVESDKEKEKEE 2711
Query: 88 -MERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 146
+E K + K + +E L + ++D KEK K ET + + E + + D E +L
Sbjct: 2712 TLEETKQSIESDKKEEKKEEKLEEIVQSD-KEKEKEETLEETKQSI-ESDKKEDEKEEKL 2769
Query: 147 EGLTVK-KGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND-ELSPEQ-VNDVKDLLE 203
E + K K + L + SI K K E + ++ +D E E+ + ++K +E
Sbjct: 2770 EEIVESDKEKEKEETLEETKQSIESDKKEDEKEEKLEEIVQSDKEKEKEETLEEIKQSIE 2829
Query: 204 DYVERNQDDFEE-FSDVDE 221
++ +D+ E+ FS ++E
Sbjct: 2830 SESDKKEDEMEKVFSRIEE 2848
Score = 67 (28.6 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 28/113 (24%), Positives = 49/113 (43%)
Query: 281 EQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPAT--PISINVPAQTLSNASNTS 338
+ ++T +DS+S + T + ++ T P P++ P S ++P T+ AS+
Sbjct: 3108 DDDDETIEKDSSSTTTSTTTTSTTTASTLTPQKPLFAPSSFAPPSFSLPTPTIQ-ASSIF 3166
Query: 339 PVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRV 391
S G+ GP+SS N +SS G+ G + PS +V
Sbjct: 3167 GSFSSQPSGGGI-SAFGPVSS----NSSSSPFGSAFGSSFGSTTIPSFGQSQV 3214
Score = 62 (26.9 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 302 AKSSGVGSTASTPAVGPA--TPISINVPAQT----LSNASNTSPVLPGSSSVRGVFDNTG 355
A S GST + P+ G + P++IN P T + S TS SSS +F +T
Sbjct: 3196 AFGSSFGST-TIPSFGQSQVNPLTIN-PTSTSPTPVFGGSTTSQF--SSSSPAPIFGSTA 3251
Query: 356 PISSSPPVNLTSSTKEEDVGNFPGRRSSPS 385
I + ++ +SS+ E+ P SPS
Sbjct: 3252 TIKTFGDLSKSSSSNNENKDQ-PSSSPSPS 3280
Score = 51 (23.0 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 18 VQEGVDVFDSIWNKVYDTDNANQKEKFEAD 47
+Q + + + +WNK D NAN + ++ D
Sbjct: 725 IQSLITLMNQVWNKCQDF-NANDLDYYQVD 753
>ZFIN|ZDB-GENE-090312-142 [details] [associations]
symbol:si:ch211-12d10.5 "si:ch211-12d10.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] EMBL:BX470227
IPI:IPI00508306 Ensembl:ENSDART00000134140 ZFIN:ZDB-GENE-090312-142
GeneTree:ENSGT00700000104356 ArrayExpress:F1RE74 Uniprot:F1RE74
Length = 347
Score = 104 (41.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 51/201 (25%), Positives = 90/201 (44%)
Query: 34 DTDNANQKEKFEADLK-KEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFK 92
D + A ++ K E L+ KE+ Y++++K W EI+++K D K ERE ER +
Sbjct: 91 DEEEAYERRKLERKLREKEVA----YQERLKNW----EIRERKKSRDYSKETEREDERQR 142
Query: 93 ICEKETKT-KAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELE-------SQIDSFEA 144
KE K K F ++ + DPK S + L + E+E + D E
Sbjct: 143 EMTKEAKRLKEFLEDY--DDDRDDPKYYRGSALQKRLRDREKEMELDERDRKREKDELE- 199
Query: 145 ELEGLTVKKGKTRPP-RLTHLETSIT-RHKAHIMK--LELILRLLDNDELSPEQVNDVKD 200
E+ + +G P L +E R KA + + +E +L+L ++ E +V
Sbjct: 200 EIRQRLLAEGHPDPDAELQRIEEEAEKRQKAPLKQEQMEEVLQLSREEQQRKEVEQEVFS 259
Query: 201 LLEDYVERNQDDFEEFSDVDE 221
+ +R +++ EE + D+
Sbjct: 260 SDNNITDREEEEEEEEKEDDD 280
Score = 64 (27.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 269 VISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPIS--INV 326
V S+ +T +E+ E+ +D + +V P + + + A G ATP++
Sbjct: 257 VFSSDNNITDREEEEEEEEKEDDDREVKPCLKPTLRPVTAAASVSSASGNATPLTPGSES 316
Query: 327 PAQTLSNASNTSPVLPGSSSVR 348
P T S N++ P + +R
Sbjct: 317 PHGTASPHENSTHEAPPTEELR 338
>UNIPROTKB|E2QV06 [details] [associations]
symbol:CGNL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016459 "myosin complex" evidence=IEA]
[GO:0003774 "motor activity" evidence=IEA] InterPro:IPR002928
Pfam:PF01576 GO:GO:0003774 GO:GO:0016459
GeneTree:ENSGT00630000089684 CTD:84952 OMA:VLNFQRH
EMBL:AAEX03016165 EMBL:AAEX03016166 EMBL:AAEX03016167
RefSeq:XP_544699.4 Ensembl:ENSCAFT00000025797 GeneID:487574
KEGG:cfa:487574 Uniprot:E2QV06
Length = 1295
Score = 129 (50.5 bits), Expect = 0.00034, P = 0.00034
Identities = 46/193 (23%), Positives = 97/193 (50%)
Query: 11 IDRVLKKVQ-EGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69
+D+ ++K+Q E D+ + ++V + NQ ++++ ++E+ ++QR + + S
Sbjct: 940 LDKTIEKLQKEMADIVEV--SRVSTLELQNQLDEYKEKNRRELAEMQRQLKEKTLEAEKS 997
Query: 70 EIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKE-KAKSETRDWL 128
+ K L D +L+E E+ ++ + E TK ++ L Q K E +AKS +D
Sbjct: 998 RLTAMK-LQDEMRLMEEELRDYQRAQDEALTK---RQLLEQTLKDLEYELEAKSHLKDDR 1053
Query: 129 NNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 188
+ LV ++E ++ E ELE R+T + + ++ +++ + + L+ D
Sbjct: 1054 SRLVKQMEDKVSQLEMELEEER-NNSDLLSERITRSREQMEQMRSELLQERALKQDLECD 1112
Query: 189 ELSPEQVNDVKDL 201
++S E+ N KDL
Sbjct: 1113 KISLERQN--KDL 1123
>WB|WBGene00019273 [details] [associations]
symbol:H43E16.1 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] eggNOG:NOG12793
GeneTree:ENSGT00700000104630 EMBL:FO080627 RefSeq:NP_495358.1
ProteinModelPortal:Q9N5K0 PaxDb:Q9N5K0 EnsemblMetazoa:H43E16.1
GeneID:174101 KEGG:cel:CELE_H43E16.1 UCSC:H43E16.1 CTD:174101
WormBase:H43E16.1 InParanoid:Q9N5K0 OMA:NVVHSAG NextBio:882515
Uniprot:Q9N5K0
Length = 1203
Score = 128 (50.1 bits), Expect = 0.00039, P = 0.00039
Identities = 81/336 (24%), Positives = 118/336 (35%)
Query: 267 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINV 326
+T+ ST Q S + SQ + PP SS +T ST + T +S+
Sbjct: 622 STIGSTVTQAPSSSTSMGPSPSQSTAGSTMTSAPPVTSSSSANTGSTSS---GTTVSV-- 676
Query: 327 PAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSS---TKEEDVGNFPGRRS 382
QT +S TSPV SS + +G SS VN SS T+ +
Sbjct: 677 --QTTQVSSTTSPVASSSSQMTSTQQPSGSSSSIGSTVNQGSSSVTTQPPASSRSTASQG 734
Query: 383 SPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGS 442
S S + G +T+VPS+ GA S V + + L S
Sbjct: 735 SSSAQPIASSSTMGSTAGSSSPQPTASSTSVPSS--TGATSSGSTVGSSTMGSTQSSLPS 792
Query: 443 SGMVQ--SLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGN 500
S M S S ++N++ S + G T I S+ A + +G+ + G +
Sbjct: 793 STMTNTGSTGSTVTNQLA-SSSTYGASSTEPIASSTANPGSSTSGQTAVTTQG-----SS 846
Query: 501 SFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQ 560
S Q + G G T P + G G ++Q + Q
Sbjct: 847 STQTNSNTGS-TGSTVTNPPVSSSTSGSSSTQPIASSTANPGSSTSGTTVVTTQGSSSTQ 905
Query: 561 QFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP 596
+ GS+ G V P S TSAS QP
Sbjct: 906 TNPNTGST-------GSTVTQPSAFSSTSASSSTQP 934
>DICTYBASE|DDB_G0288067 [details] [associations]
symbol:mf12 species:44689 "Dictyostelium discoideum"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR015880 SMART:SM00355
dictyBase:DDB_G0288067 GO:GO:0008270 GenomeReviews:CM000154_GR
GO:GO:0005622 EMBL:AAFI02000109 RefSeq:XP_001134526.1
EnsemblProtists:DDB0233045 GeneID:8626468 KEGG:ddi:DDB_G0288067
eggNOG:euNOG31986 OMA:FDCLEND Uniprot:Q1ZXD8
Length = 1517
Score = 114 (45.2 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 48/219 (21%), Positives = 107/219 (48%)
Query: 7 LQGEI-DRVLKKVQEGVDVFDSIWNKVY-DTDNANQKEKFEADLKKEIKKLQRYRD---Q 61
L EI + +L +V E ++ + K+Y D KE+ E +L++E ++L+R R+ +
Sbjct: 518 LLSEIAEEILNEVVE--ELCGKVSKKIYLDDKRKKNKEEKERELERE-RELERERELERE 574
Query: 62 IKTWIQSSEIKDKKALVDARKLIERE--MERFKICEKETKTKAFSKEGLGQQPKTDPKEK 119
+ I+ E++ ++ L R+ IE+E +ER + E++ K K +E + + + KE+
Sbjct: 575 RERQIKEKELERERELERERERIEKEKLLERER--ERKEKEKQLEREREQLRLEKEEKER 632
Query: 120 AKSETRDWLNNLVSE-LESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKL 178
K ++ + L+NLV E L+ I +E+ T ++ + + + + +
Sbjct: 633 LKQQSEE-LDNLVDEILDELIFDQVSEIATTTYQEYLSNKNKQQQQILQQQQQQQQQQQQ 691
Query: 179 ELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFS 217
+ ++L +L +Q + L + +++ Q ++ S
Sbjct: 692 QQQQQILQQQQLQQQQQQQQQQLQQQQLQQQQQQLQQQS 730
Score = 71 (30.1 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 24/95 (25%), Positives = 43/95 (45%)
Query: 270 ISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQ 329
I HQQ Q+Q + Q S + ++ PP KSS P + +IN+
Sbjct: 834 IHQHQQQQQQQQQQQQQQQQLSPTPIS---PP-KSS-----FQNPLLS-----NININNN 879
Query: 330 TLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVN 364
+ + P+ P ++S+ G ++T P++ P+N
Sbjct: 880 PMKQSITQKPISPSNNSMNGPINSTNPLNPIGPIN 914
Score = 42 (19.8 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 18/55 (32%), Positives = 23/55 (41%)
Query: 554 QQNPLLQQFNSQGSSISAQAGLGLGVQAPGMN-SVTSASLQQQPNPIHQQSSQQT 607
QQ P+ ++ S+ Q L P + S TS S QQQ QQ Q T
Sbjct: 1100 QQQPIGFSISNDNSNQFQQTSQFLA--NPNTSTSPTSLSQQQQQQQQQQQQPQPT 1152
>WB|WBGene00003825 [details] [associations]
symbol:ntl-2 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0019915 "lipid storage"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] InterPro:IPR007282 Pfam:PF04153
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006355 GO:GO:0040011 GO:GO:0040018 GO:GO:0019915
GO:GO:0040035 HOGENOM:HOG000246523 KO:K12605
GeneTree:ENSGT00390000001285 EMBL:FO080154 GeneID:173773
KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1 CTD:173773 NextBio:881031
PIR:T15310 RefSeq:NP_494772.1 ProteinModelPortal:Q10923
DIP:DIP-25406N IntAct:Q10923 MINT:MINT-1053402 STRING:Q10923
PRIDE:Q10923 EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 120 (47.3 bits), Expect = 0.00077, P = 0.00077
Identities = 33/99 (33%), Positives = 43/99 (43%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVAND--E 842
L L+ D LF+ FY N Q AA EL + WR+H+ W R + V
Sbjct: 263 LRLNKVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGN 322
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+E+G Y FD Q W ++I E EY LED
Sbjct: 323 YEKGHYNVFD--------QMQW-RKIPKELKLEYKELED 352
>UNIPROTKB|Q10923 [details] [associations]
symbol:ntl-2 "Protein NTL-2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0006355
GO:GO:0040011 GO:GO:0040018 GO:GO:0019915 GO:GO:0040035
HOGENOM:HOG000246523 KO:K12605 GeneTree:ENSGT00390000001285
EMBL:FO080154 GeneID:173773 KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1
CTD:173773 NextBio:881031 PIR:T15310 RefSeq:NP_494772.1
ProteinModelPortal:Q10923 DIP:DIP-25406N IntAct:Q10923
MINT:MINT-1053402 STRING:Q10923 PRIDE:Q10923
EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 120 (47.3 bits), Expect = 0.00077, P = 0.00077
Identities = 33/99 (33%), Positives = 43/99 (43%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVAND--E 842
L L+ D LF+ FY N Q AA EL + WR+H+ W R + V
Sbjct: 263 LRLNKVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGN 322
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+E+G Y FD Q W ++I E EY LED
Sbjct: 323 YEKGHYNVFD--------QMQW-RKIPKELKLEYKELED 352
>UNIPROTKB|D4AD67 [details] [associations]
symbol:Ktn1 "Protein Ktn1" species:10116 "Rattus
norvegicus" [GO:0007018 "microtubule-based movement" evidence=IEA]
[GO:0019894 "kinesin binding" evidence=IEA] InterPro:IPR024854
GO:GO:0007018 OrthoDB:EOG4Z62N5 PANTHER:PTHR18864
GeneTree:ENSGT00530000063895 IPI:IPI00392181
Ensembl:ENSRNOT00000037854 ArrayExpress:D4AD67 Uniprot:D4AD67
Length = 1272
Score = 125 (49.1 bits), Expect = 0.00088, P = 0.00088
Identities = 66/257 (25%), Positives = 121/257 (47%)
Query: 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ-RYRDQIK 63
+K E D L+ V+E ++ + + N + L KE+++L+ + DQ+
Sbjct: 736 KKCIQEKDEKLRTVEELLET--GLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVP 793
Query: 64 TWIQSSEIKDKKALVDAR----KLIER--EMERFKICEKETKTKAFSKEG--LGQQPKTD 115
++ S I+D K ++ + K +E E+E K+ KE +A +E L ++
Sbjct: 794 -FV--SLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNA 850
Query: 116 PKEKAK-----SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR---PPRLTHLETS 167
EKA S+ ++ L NL+ E Q+DS +A LE LT ++ T+ PR LE
Sbjct: 851 QLEKAHQLSVTSQVQE-LQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENV 909
Query: 168 ITRHKAHIMKLELILRLLDND-ELSPEQVNDVKD---LLEDYVER-NQDDFEE--FSDVD 220
+ I ++E IL+ +D E + +V+D L + VE+ N + ++ F +
Sbjct: 910 LKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQE 969
Query: 221 ELYHLLPLDKVESLEDL 237
EL ++ +K + + DL
Sbjct: 970 ELQTVIS-EKEKEITDL 985
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.129 0.364 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 885 809 0.00099 121 3 11 23 0.48 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 55
No. of states in DFA: 621 (66 KB)
Total size of DFA: 380 KB (2186 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 96.44u 0.13s 96.57t Elapsed: 00:00:04
Total cpu time: 96.46u 0.13s 96.59t Elapsed: 00:00:04
Start: Tue May 21 05:30:21 2013 End: Tue May 21 05:30:25 2013