BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002752
(885 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3
PE=1 SV=1
Length = 753
Score = 246 bits (629), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/249 (52%), Positives = 170/249 (68%), Gaps = 11/249 (4%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
QIKTW+ S+EIKDK+ L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +K
Sbjct: 61 QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE 120
Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTVK-----KGKTRPPRLTHLETSITRHKAHI 175
K E WL N + L Q+D FE+E+E L+V+ K + R+ L+ I +H+ H+
Sbjct: 121 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV 180
Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESL 234
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ +
Sbjct: 181 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEE---NEFLYDDLDLEDIP-- 235
Query: 235 EDLVTIGPP 243
+ LV PP
Sbjct: 236 QALVATSPP 244
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)
Query: 729 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 788
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 789 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 848
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 849 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDY--------EKWGQRKKEGFTFEYRYLED 749
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3
PE=1 SV=1
Length = 751
Score = 246 bits (627), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 130/249 (52%), Positives = 170/249 (68%), Gaps = 11/249 (4%)
Query: 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
M RKLQGEIDR LKKV EGV+ F+ IW K+++ NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1 MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60
Query: 61 QIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120
QIKTW+ S+EIKDK+ L++ RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +K
Sbjct: 61 QIKTWVASNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE 120
Query: 121 KSETRDWLNNLVSELESQIDSFEAELEGLTVK-----KGKTRPPRLTHLETSITRHKAHI 175
K E WL N + L Q+D FE+E+E L+V+ K + R+ L+ I +H+ H+
Sbjct: 121 KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV 180
Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESL 234
LE ILR+LDND + + + +KD +E YV+ +QD DFEE + LY L L+ +
Sbjct: 181 RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEE---NEFLYDDLDLEDIP-- 235
Query: 235 EDLVTIGPP 243
+ LV PP
Sbjct: 236 QALVATSPP 244
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)
Query: 729 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 788
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 789 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 848
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 849 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 881
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDY--------EKWGQRKKEGFTFEYRYLED 747
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not3 PE=1 SV=2
Length = 640
Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 165/482 (34%), Positives = 250/482 (51%), Gaps = 50/482 (10%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
++RKLQ EI++ KKV +G+ +FD ++ K+ +++ +QKEK E DLK +IKKLQR RDQI
Sbjct: 2 SARKLQVEIEKTFKKVTDGIAIFDEVYEKLSASNSVSQKEKLEGDLKTQIKKLQRLRDQI 61
Query: 63 KTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKS 122
KTW S++IKDKKAL++ R+LIE +ME FK E+E K KAFSKEGL K DPKEK K
Sbjct: 62 KTWASSNDIKDKKALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKLDPKEKEKQ 121
Query: 123 ETRDWLNNLVSELESQIDSFEAELEGL--TVKKGKTRPPRLTH---LETSITRHKAHIMK 177
+T W++N V ELE Q + EAE E L T K+GK +L+H LE+ I RHK H K
Sbjct: 122 DTIQWISNAVEELERQAELIEAEAESLKATFKRGKKDLSKLSHLSELESRIERHKWHQDK 181
Query: 178 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDL 237
LELI+R L+N ++SPE VND+++ + YVE +Q E+F++ + LY L LD+ + D
Sbjct: 182 LELIMRRLENSQISPEAVNDIQEDIMYYVECSQS--EDFAEDENLYDELNLDEASASYDA 239
Query: 238 VTIG------------------PPGLVKGAPALSLKASLAASASQMP--ATVISTHQQVT 277
G L++ K S AS + ++ + + T
Sbjct: 240 ERSGRSSSSSHSPSPSASSSSSSENLLQDKAEAEEKVSADASVQDIAEKESLDADKELAT 299
Query: 278 SVQEQGED------------TASQDSNSDVAARTPPAKSSGVGS-TASTPAVGPATPISI 324
+ QE E+ + +++ S+V P A +S V + T T P+TP+S+
Sbjct: 300 NDQEDDEEENQAETQKDGAISNNENMQSEVQTTNPSASTSAVTNITKPTLIQNPSTPLSV 359
Query: 325 N---VPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRR 381
+ V + NA++T+P + + SP + + N P
Sbjct: 360 SNSKVASPETPNATHTAPKVEMRYASAAAAAAAALAKESPSHHYIMQQVRPETPNSPRLN 419
Query: 382 SSPSLTDVRVMGRGG---LSSQPSSSIPLSSAT----AVPSNGNLGAVPLVSDVAKRNIL 434
S+ + +G + +QP S+ SSAT P+ VP+ S ++++
Sbjct: 420 STVIQSKWDSLGHTASPKMQTQPVRSVSQSSATTETNVKPTKEENADVPVSSPDYLKDLV 479
Query: 435 GA 436
A
Sbjct: 480 NA 481
Score = 146 bits (369), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 124/246 (50%), Gaps = 21/246 (8%)
Query: 638 PESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSG 697
PE+ +SP L +I + S G +AS Q VR S + +P+
Sbjct: 410 PETPNSPRLNSTVIQ--------SKWDSLGHTASPKMQTQPVRSVSQSSATTETNVKPTK 461
Query: 698 GLGVIGRRSVSD-LGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSY 756
S D L + ++L+ + G D+ + L + +P D+ + + Y
Sbjct: 462 EENADVPVSSPDYLKDLVNALNTSKEQHKGAIDKEKLTEALNISCVYVPDATDAAKPQYY 521
Query: 757 IPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELK 816
IP+ P P YPQ P+ + E + DTLF+ FYY+ TYQQY+A +ELK
Sbjct: 522 IPKDPYPVPHYYPQQPLPLFDSSEMTELV-----DPDTLFYMFYYRPGTYQQYIAGQELK 576
Query: 817 KQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEY 876
KQSWR+H+KY TWFQRHEEPK+ DEFE G+Y YFDF + W QR K +F F Y
Sbjct: 577 KQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDF-------EGDWVQRKKADFRFTY 629
Query: 877 NYLEDE 882
YLED+
Sbjct: 630 QYLEDD 635
>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT3 PE=1 SV=2
Length = 836
Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 143/221 (64%), Gaps = 8/221 (3%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYD-TDNANQKEKFEADLKKEIKKLQRYRDQ 61
A RKLQ E+DRV KK+ EG+++F+S + + T+N +QK+K E+DLK+E+KKLQR R+Q
Sbjct: 2 AHRKLQQEVDRVFKKINEGLEIFNSYYERHESCTNNPSQKDKLESDLKREVKKLQRLREQ 61
Query: 62 IKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAK 121
IK+W S +IKDK +L+D R+ +E ME++K EK +K KA+S L + DP+E+ +
Sbjct: 62 IKSWQSSPDIKDKDSLLDYRRSVEIAMEKYKAVEKASKEKAYSNISLKKSETLDPQERER 121
Query: 122 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETS------ITRHKAHI 175
+ ++L+ ++ ELE Q DS + E++ L + K + T+ E R++ H
Sbjct: 122 RDISEYLSQMIDELERQYDSLQVEIDKLLLLNKKKKTSSTTNDEKKEQYKRFQARYRWHQ 181
Query: 176 MKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEE 215
++EL LRLL N+EL P+ V +V+D + +VE NQD DF E
Sbjct: 182 QQMELALRLLANEELDPQDVKNVQDDINYFVESNQDPDFVE 222
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 794 TLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDF 853
+LF+ +Y+ ++ +A K L ++ W+ + WF R E K N+ E G Y F
Sbjct: 707 SLFYNYYFAITPLEREIAYKILNERDWKVSKDGTMWFLRQGEVKFFNEICEVGDYKIFKL 766
Query: 854 HIANDDLQHGWCQRIKTEFTFEYNYLE 880
DD W K F +Y++L+
Sbjct: 767 ----DD----WTVIDKINFRLDYSFLQ 785
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT5 PE=1 SV=1
Length = 560
Score = 160 bits (404), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 123/342 (35%), Positives = 183/342 (53%), Gaps = 56/342 (16%)
Query: 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD--NANQKEKFEADLKKEIKKLQRYRD 60
+ RKLQ +ID++LKKV+EG++ FD I+ K TD N++ +EK E+DLK+EIKKLQ++RD
Sbjct: 2 SQRKLQQDIDKLLKKVKEGIEDFDDIYEKFQSTDPSNSSHREKLESDLKREIKKLQKHRD 61
Query: 61 QIKTWIQSSEIKDKKA-LVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKT--DPK 117
QIKTW+ ++KDK++ L+ R+LIE MERFK EK KTK FSKE L P DPK
Sbjct: 62 QIKTWLSKEDVKDKQSVLMTNRRLIENGMERFKSVEKLMKTKQFSKEALT-NPDIIKDPK 120
Query: 118 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMK 177
E K + ++++ + EL+ Q++ +EA+ E RH+ HI
Sbjct: 121 ELKKRDQVLFIHDCLDELQKQLEQYEAQ-----------------ENEEQTERHEFHIAN 163
Query: 178 LELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLPLDKVESLED 236
LE IL+ L N+E+ PE V + +D ++ YVE N D DF E+ D +Y ED
Sbjct: 164 LENILKKLQNNEMDPEPVEEFQDDIKYYVENNDDPDFIEY---DTIY-----------ED 209
Query: 237 L-VTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNSDV 295
+ I P AP + +++ S+ +Q S +++ +D +
Sbjct: 210 MGCEIQPSSSNNEAPK-------EGNNQTSLSSIRSSKKQERSPKKKA---PQRDVSISD 259
Query: 296 AARTP--PAKSSGVGSTASTPAVGPATPISINVPAQTLSNAS 335
A TP P S S +STP TP+S + P T+ + S
Sbjct: 260 RATTPIAPGVESASQSISSTP-----TPVSTDTPLHTVKDDS 296
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 790 YGTDTLFFAFYYQQNTYQQYLAAKEL-KKQSWRYHRKYNTWFQRHEE---PKVANDEFEQ 845
+ DTLFF FY+ Q +Y+Q+LAA+EL K ++W +++ W+ + E P + E E
Sbjct: 472 FDLDTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKEIEKLPPGMGKSEEE- 530
Query: 846 GTYVYFDF 853
++ YFD+
Sbjct: 531 -SWRYFDY 537
>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment)
OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1
Length = 603
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 21/181 (11%)
Query: 676 AQVVRDTDLSPGQPLQSSQPSGGLGVIG--RRSVSDLGAIGDSLSGATVSSGGMHDQMYN 733
Q RD L Q + P G LG++ R S DL ++ + T+ N
Sbjct: 412 GQPFRDQSLKSMQSQVAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLG--------LN 463
Query: 734 MQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTD 793
+ E+ + P E A+ P T P + P N A++ + LD
Sbjct: 464 LNSAENLYKTFGSPWSDEPAKG----DPEFTVPQCYYAKQPPPLNQAYFSKFQLD----- 514
Query: 794 TLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR--HEEPKVANDEFEQGTYVYF 851
TLF+ FY Q AA EL + W YHR++ WF R + EP V + +E+G+Y+ F
Sbjct: 515 TLFYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICF 574
Query: 852 D 852
D
Sbjct: 575 D 575
>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2
PE=1 SV=1
Length = 540
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 882
+E+GTY +FD W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFDC--------LNW-RKVAKEFHLEYDKLEER 524
>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2
PE=2 SV=2
Length = 540
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 785 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 842
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 882
+E+GTY +FD W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFDC--------LNW-RKVAKEFHLEYDKLEER 524
>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis
thaliana GN=VIP2 PE=1 SV=2
Length = 614
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 784 RLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEF 843
R S + + LF+ FY Q AA EL ++ W YH++ WF R EP V +
Sbjct: 518 RASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLVRAATY 577
Query: 844 EQGTYVYFD 852
E+GTY Y D
Sbjct: 578 ERGTYEYLD 586
>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC36 PE=1 SV=1
Length = 191
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 76/170 (44%), Gaps = 44/170 (25%)
Query: 737 LESAFYKLPQPKDS--------------ERARSYI-PRHPAVTPPSY---PQVQAPIVSN 778
L S Y L P+DS E +RS + PR TP S+ P V V+
Sbjct: 34 LSSMLYSLGIPRDSQDHRVLDTFQSPWAETSRSEVEPRF--FTPESFTNIPGVLQSTVTP 91
Query: 779 PAF------WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR 832
P F +R++L + +TLFF FY T Q L EL+K++WRYH+ W +
Sbjct: 92 PCFNSIQNDQQRVAL--FQDETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTK 149
Query: 833 --HEEPKVANDEF-EQGTYVYFDFHIANDDLQHGW--CQRIKTEFTFEYN 877
EP V+ D E+G+YV+FD W CQR +F YN
Sbjct: 150 DPMMEPIVSADGLSERGSYVFFD--------PQRWEKCQR---DFLLFYN 188
>sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not2 PE=1 SV=2
Length = 306
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 20/121 (16%)
Query: 771 VQAPIVSNPAFWERLS-------LDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH 823
V P+ PA ++ ++ + + +TLF+ FY Q AA+EL ++WR+H
Sbjct: 188 VSQPMFKLPACYKNVNPPPAISKIFQFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFH 247
Query: 824 RKYNTWFQ--RHEEPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLE 880
++ W +P +FE+G Y++FD H W +RIK +F Y LE
Sbjct: 248 KELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIH---------W-KRIKKDFLLMYAALE 297
Query: 881 D 881
D
Sbjct: 298 D 298
>sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=2
SV=2
Length = 585
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 793 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKV----ANDEFEQGTY 848
D LFF FY Q +AA EL + WRYH + W R P + N E+GT+
Sbjct: 491 DLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITR--IPGIDQYEKNGTKERGTF 548
Query: 849 VYFD 852
YFD
Sbjct: 549 YYFD 552
>sp|Q32MK0|MYLK3_HUMAN Myosin light chain kinase 3 OS=Homo sapiens GN=MYLK3 PE=2 SV=3
Length = 819
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 18/148 (12%)
Query: 266 PATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 325
P V+ST + +E GE++ D A R PP ++SG+G+ + V P +
Sbjct: 171 PKHVLSTSGVQSDAREPGEESQKADVLEGTAERLPPIRASGLGADPAQAVVSPGQGDGVP 230
Query: 326 VPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS--S 383
PAQ PG + + P +P NL + ++ PGR + S
Sbjct: 231 GPAQ----------AFPGHLPLPTKVEAKAP--ETPSENLRTGL---ELAPAPGRVNVVS 275
Query: 384 PSLTDVRVMGRGGLSSQPSSSIPLSSAT 411
PSL G+G SS+P PL T
Sbjct: 276 PSLEVAPGAGQGASSSRPDPE-PLEEGT 302
>sp|P39880|CUX1_HUMAN Homeobox protein cut-like 1 OS=Homo sapiens GN=CUX1 PE=1 SV=3
Length = 1505
Score = 33.5 bits (75), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-------QR 57
+ QGEID + K+ +E F +++ ++ D + L+ ++++L Q+
Sbjct: 58 KSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIETENQK 117
Query: 58 YRDQIKTWIQS-SEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDP 116
R+ ++ + + +E+K+++ + A K RE E + + + +T A KE Q +
Sbjct: 118 LRETLEEYNKEFAEVKNQEVTIKALKEKIREYE--QTLKNQAETIALEKEQKLQNDFAE- 174
Query: 117 KEKAKSETRDWLNNLVSELESQIDSFEAELE 147
KE+ ET+ + + E E ++ S + LE
Sbjct: 175 KERKLQETQMSTTSKLEEAEHKVQSLQTALE 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,825,027
Number of Sequences: 539616
Number of extensions: 15104815
Number of successful extensions: 56035
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 904
Number of HSP's that attempted gapping in prelim test: 52417
Number of HSP's gapped (non-prelim): 3294
length of query: 885
length of database: 191,569,459
effective HSP length: 127
effective length of query: 758
effective length of database: 123,038,227
effective search space: 93262976066
effective search space used: 93262976066
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)