Query 002752
Match_columns 885
No_of_seqs 270 out of 454
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 06:24:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2150 CCR4-NOT transcription 100.0 4E-118 9E-123 990.0 43.0 567 2-882 1-574 (575)
2 COG5665 NOT5 CCR4-NOT transcri 100.0 4.1E-95 9E-100 773.3 32.6 199 12-230 1-199 (548)
3 PF04065 Not3: Not1 N-terminal 100.0 5.2E-88 1.1E-92 693.9 25.1 227 3-231 2-233 (233)
4 PF04153 NOT2_3_5: NOT2 / NOT3 100.0 1E-36 2.2E-41 291.2 10.0 126 740-880 1-134 (134)
5 COG5601 CDC36 General negative 100.0 6.6E-34 1.4E-38 273.9 2.2 163 699-880 6-172 (172)
6 KOG2151 Predicted transcriptio 99.6 1.4E-15 3E-20 162.8 3.7 97 704-820 213-312 (312)
7 KOG2151 Predicted transcriptio 99.4 3.9E-13 8.4E-18 144.2 5.3 133 712-881 37-175 (312)
8 PHA02562 46 endonuclease subun 95.4 0.93 2E-05 52.3 18.7 135 5-150 177-326 (562)
9 cd07674 F-BAR_FCHO1 The F-BAR 95.4 0.18 3.9E-06 54.0 12.1 166 24-212 57-250 (261)
10 PF08317 Spc7: Spc7 kinetochor 94.3 4.4 9.6E-05 44.9 19.7 46 159-206 244-289 (325)
11 KOG0996 Structural maintenance 93.8 1.5 3.2E-05 55.8 16.1 146 38-191 819-967 (1293)
12 PF12128 DUF3584: Protein of u 93.3 1.4 2.9E-05 56.6 15.4 129 38-187 731-876 (1201)
13 KOG0963 Transcription factor/C 92.9 1.4 3.1E-05 52.7 13.6 31 7-37 71-101 (629)
14 TIGR02169 SMC_prok_A chromosom 92.7 2.7 6E-05 52.1 16.3 17 45-61 193-209 (1164)
15 KOG0250 DNA repair protein RAD 92.6 1.7 3.8E-05 54.8 14.3 63 117-179 395-463 (1074)
16 TIGR03185 DNA_S_dndD DNA sulfu 92.6 8.2 0.00018 46.5 19.7 32 38-69 261-292 (650)
17 KOG0933 Structural maintenance 92.5 7.6 0.00017 49.2 19.2 80 131-210 407-503 (1174)
18 PRK04778 septation ring format 91.9 7.2 0.00016 46.4 17.8 36 172-207 451-490 (569)
19 cd07648 F-BAR_FCHO The F-BAR ( 91.7 1.5 3.3E-05 46.6 11.0 84 127-211 165-249 (261)
20 PRK04863 mukB cell division pr 91.6 11 0.00025 49.8 20.5 51 159-209 404-454 (1486)
21 KOG3771 Amphiphysin [Intracell 91.6 29 0.00064 40.9 21.6 29 5-33 4-40 (460)
22 PF07139 DUF1387: Protein of u 91.5 2.3 5E-05 47.4 12.3 112 41-210 148-260 (302)
23 PF03357 Snf7: Snf7; InterPro 91.4 0.78 1.7E-05 44.7 7.8 87 124-211 2-122 (171)
24 KOG4438 Centromere-associated 91.4 10 0.00022 44.2 17.4 94 76-190 266-361 (446)
25 PF00038 Filament: Intermediat 91.3 4.5 9.8E-05 43.7 14.2 101 76-186 170-275 (312)
26 PF08317 Spc7: Spc7 kinetochor 90.8 9.4 0.0002 42.4 16.3 103 12-150 162-264 (325)
27 PF10168 Nup88: Nuclear pore c 90.7 5.6 0.00012 49.0 15.6 157 14-180 537-706 (717)
28 KOG0996 Structural maintenance 90.4 5.1 0.00011 51.3 15.1 63 128-190 547-615 (1293)
29 cd00632 Prefoldin_beta Prefold 89.7 4.5 9.8E-05 37.8 10.9 81 50-148 3-88 (105)
30 KOG2911 Uncharacterized conser 89.7 0.65 1.4E-05 53.5 6.4 110 95-208 209-352 (439)
31 PRK02224 chromosome segregatio 89.6 7.9 0.00017 47.7 15.8 38 50-98 509-546 (880)
32 KOG4674 Uncharacterized conser 88.8 1.9 4.1E-05 57.1 10.3 99 1-103 1277-1393(1822)
33 cd07673 F-BAR_FCHO2 The F-BAR 88.4 4.7 0.0001 43.8 11.5 77 128-212 173-257 (269)
34 COG1196 Smc Chromosome segrega 88.3 9.9 0.00021 48.9 16.0 29 160-188 871-899 (1163)
35 cd07653 F-BAR_CIP4-like The F- 88.2 20 0.00043 37.7 15.7 44 7-56 3-46 (251)
36 COG0419 SbcC ATPase involved i 88.1 8.9 0.00019 47.9 15.1 24 124-147 648-671 (908)
37 PRK02224 chromosome segregatio 87.8 27 0.00059 43.1 18.8 26 161-186 421-446 (880)
38 PRK01156 chromosome segregatio 87.8 22 0.00047 44.2 18.0 46 105-150 451-496 (895)
39 KOG0995 Centromere-associated 87.7 4.7 0.0001 48.3 11.6 83 54-141 243-326 (581)
40 KOG0161 Myosin class II heavy 87.7 5 0.00011 53.9 13.0 47 3-49 1323-1371(1930)
41 COG1196 Smc Chromosome segrega 87.6 4.2 9.2E-05 52.1 12.2 12 215-226 971-982 (1163)
42 PTZ00464 SNF-7-like protein; P 87.3 2.3 5E-05 45.1 8.1 90 122-211 17-142 (211)
43 PRK03918 chromosome segregatio 87.3 15 0.00032 45.1 16.1 17 170-186 366-382 (880)
44 TIGR02338 gimC_beta prefoldin, 87.2 7.1 0.00015 37.0 10.5 82 47-146 4-90 (110)
45 PF07888 CALCOCO1: Calcium bin 87.0 9.4 0.0002 45.8 13.6 60 7-68 141-200 (546)
46 PRK11637 AmiB activator; Provi 86.8 13 0.00027 42.6 14.3 27 123-149 170-196 (428)
47 PRK03918 chromosome segregatio 86.3 25 0.00055 43.2 17.3 19 169-187 455-473 (880)
48 PF13166 AAA_13: AAA domain 86.2 22 0.00048 42.7 16.5 27 123-149 370-396 (712)
49 COG4942 Membrane-bound metallo 85.9 16 0.00035 42.6 14.4 127 6-150 42-174 (420)
50 PRK05771 V-type ATP synthase s 85.7 33 0.00072 41.4 17.6 78 128-205 213-297 (646)
51 smart00503 SynN Syntaxin N-ter 85.6 12 0.00025 34.5 10.9 95 7-101 9-115 (117)
52 KOG0250 DNA repair protein RAD 85.5 19 0.0004 46.2 15.6 40 23-62 214-254 (1074)
53 PTZ00464 SNF-7-like protein; P 85.4 32 0.00069 36.7 15.3 35 56-90 42-79 (211)
54 COG1579 Zn-ribbon protein, pos 85.2 12 0.00026 40.7 12.3 49 5-62 34-82 (239)
55 KOG0612 Rho-associated, coiled 85.0 14 0.0003 47.7 14.3 89 48-150 642-734 (1317)
56 PF11932 DUF3450: Protein of u 85.0 48 0.001 35.5 16.6 27 175-201 130-157 (251)
57 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.9 31 0.00067 33.7 13.9 122 4-149 5-131 (132)
58 PF04799 Fzo_mitofusin: fzo-li 84.9 2.5 5.4E-05 43.8 6.7 63 6-93 102-165 (171)
59 cd07675 F-BAR_FNBP1L The F-BAR 84.8 43 0.00094 36.7 16.3 80 8-92 4-133 (252)
60 cd00176 SPEC Spectrin repeats, 84.7 7.8 0.00017 37.5 9.8 64 82-148 33-97 (213)
61 PF03962 Mnd1: Mnd1 family; I 84.5 9.4 0.0002 39.7 10.8 99 105-208 41-150 (188)
62 cd07672 F-BAR_PSTPIP2 The F-BA 84.3 18 0.0004 38.9 13.2 18 189-206 204-221 (240)
63 COG1283 NptA Na+/phosphate sym 84.1 14 0.00031 44.2 13.3 168 9-199 338-516 (533)
64 PHA00425 DNA packaging protein 83.9 2.4 5.2E-05 39.3 5.5 67 135-211 6-76 (88)
65 PF12128 DUF3584: Protein of u 83.3 25 0.00054 45.7 16.0 27 6-32 604-630 (1201)
66 PRK09039 hypothetical protein; 83.2 31 0.00068 38.9 15.0 26 124-149 138-163 (343)
67 KOG1029 Endocytic adaptor prot 83.2 30 0.00064 43.3 15.4 55 6-60 324-382 (1118)
68 PRK01156 chromosome segregatio 82.9 31 0.00067 42.9 16.2 22 169-190 729-750 (895)
69 PRK09343 prefoldin subunit bet 82.8 23 0.00051 34.4 12.0 44 44-99 5-48 (121)
70 PTZ00446 vacuolar sorting prot 82.7 7 0.00015 41.1 9.0 25 187-211 124-148 (191)
71 PF10174 Cast: RIM-binding pro 82.3 28 0.00061 43.5 15.3 183 7-202 397-599 (775)
72 PF04156 IncA: IncA protein; 82.3 60 0.0013 32.9 15.4 20 76-95 131-150 (191)
73 cd00890 Prefoldin Prefoldin is 81.7 20 0.00044 33.7 11.0 32 118-149 82-113 (129)
74 PF12729 4HB_MCP_1: Four helix 81.6 18 0.00039 34.0 10.6 38 33-70 69-106 (181)
75 cd07655 F-BAR_PACSIN The F-BAR 81.4 19 0.00042 38.7 12.1 30 24-53 61-92 (258)
76 PF03148 Tektin: Tektin family 81.1 85 0.0018 36.0 17.6 92 5-97 56-170 (384)
77 TIGR02680 conserved hypothetic 80.9 37 0.0008 44.8 16.4 72 14-98 221-292 (1353)
78 PLN03229 acetyl-coenzyme A car 80.8 1.3E+02 0.0029 37.8 19.8 57 6-63 466-545 (762)
79 PLN03229 acetyl-coenzyme A car 80.7 75 0.0016 39.8 17.7 17 74-90 603-619 (762)
80 KOG4460 Nuclear pore complex, 80.6 82 0.0018 38.3 17.3 124 13-148 559-687 (741)
81 PF11123 DNA_Packaging_2: DNA 80.2 4.5 9.8E-05 37.2 5.8 67 135-211 4-74 (82)
82 TIGR02168 SMC_prok_B chromosom 80.1 30 0.00066 43.0 14.7 16 46-61 196-211 (1179)
83 KOG0161 Myosin class II heavy 80.0 23 0.00049 48.2 14.2 57 128-184 1060-1129(1930)
84 PF06160 EzrA: Septation ring 80.0 83 0.0018 37.8 17.7 84 47-150 249-333 (560)
85 COG1293 Predicted RNA-binding 80.0 12 0.00025 45.0 10.8 72 24-95 266-344 (564)
86 PRK04778 septation ring format 79.7 1.4E+02 0.003 36.0 19.4 59 47-108 253-312 (569)
87 TIGR00606 rad50 rad50. This fa 79.4 72 0.0016 41.9 18.2 83 126-208 308-405 (1311)
88 PF14662 CCDC155: Coiled-coil 78.7 69 0.0015 34.1 14.5 58 3-92 16-73 (193)
89 cd07598 BAR_FAM92 The Bin/Amph 78.4 40 0.00088 35.8 13.0 83 5-92 21-107 (211)
90 KOG0810 SNARE protein Syntaxin 78.2 86 0.0019 35.3 16.0 89 10-98 44-146 (297)
91 PRK03947 prefoldin subunit alp 78.0 11 0.00025 36.6 8.3 32 118-149 89-120 (140)
92 PF01544 CorA: CorA-like Mg2+ 77.5 11 0.00023 39.4 8.5 82 124-208 119-207 (292)
93 PF15272 BBP1_C: Spindle pole 77.4 12 0.00026 39.7 8.7 45 13-61 19-66 (196)
94 cd00179 SynN Syntaxin N-termin 77.4 25 0.00055 33.9 10.5 95 7-101 7-114 (151)
95 TIGR02168 SMC_prok_B chromosom 77.2 1.1E+02 0.0023 38.5 18.1 24 161-184 435-458 (1179)
96 smart00787 Spc7 Spc7 kinetocho 77.1 1.3E+02 0.0029 33.8 19.1 44 160-205 240-283 (312)
97 TIGR00606 rad50 rad50. This fa 77.0 34 0.00074 44.8 14.4 11 15-25 774-784 (1311)
98 PF06730 FAM92: FAM92 protein; 76.4 83 0.0018 34.2 14.6 47 124-184 154-205 (219)
99 PF07106 TBPIP: Tat binding pr 76.1 13 0.00029 37.3 8.4 76 132-207 81-159 (169)
100 PF08429 PLU-1: PLU-1-like pro 75.7 99 0.0021 34.1 15.6 77 10-88 104-193 (335)
101 PF03962 Mnd1: Mnd1 family; I 75.7 33 0.00072 35.8 11.4 65 128-196 108-177 (188)
102 PHA02562 46 endonuclease subun 75.3 1.1E+02 0.0024 35.7 16.7 23 129-151 350-372 (562)
103 PF13514 AAA_27: AAA domain 75.1 78 0.0017 40.9 16.6 60 5-64 133-199 (1111)
104 PF01496 V_ATPase_I: V-type AT 74.8 11 0.00024 46.3 8.8 52 15-68 76-128 (759)
105 PF03938 OmpH: Outer membrane 74.6 31 0.00067 33.7 10.3 61 5-65 39-102 (158)
106 PF05833 FbpA: Fibronectin-bin 74.5 1.3 2.7E-05 50.4 0.8 43 160-203 395-437 (455)
107 PF07888 CALCOCO1: Calcium bin 74.1 1.2E+02 0.0026 36.9 16.6 9 172-180 326-334 (546)
108 KOG0994 Extracellular matrix g 74.1 44 0.00095 43.5 13.4 61 7-69 1427-1487(1758)
109 KOG4286 Dystrophin-like protei 73.8 15 0.00032 45.6 9.3 169 12-183 54-251 (966)
110 KOG1899 LAR transmembrane tyro 73.7 1.6E+02 0.0035 36.5 17.3 95 116-211 192-292 (861)
111 smart00502 BBC B-Box C-termina 73.4 62 0.0013 29.6 11.4 32 118-149 38-69 (127)
112 PF15619 Lebercilin: Ciliary p 73.4 45 0.00097 35.2 11.6 92 8-108 56-160 (194)
113 PF03999 MAP65_ASE1: Microtubu 73.2 12 0.00026 45.1 8.5 127 4-146 266-411 (619)
114 COG3096 MukB Uncharacterized p 72.9 12 0.00027 46.2 8.3 132 51-206 807-947 (1480)
115 PF10174 Cast: RIM-binding pro 72.7 65 0.0014 40.5 14.6 40 5-57 565-604 (775)
116 KOG2129 Uncharacterized conser 72.5 65 0.0014 38.0 13.4 18 4-21 72-89 (552)
117 TIGR03185 DNA_S_dndD DNA sulfu 71.5 81 0.0018 38.3 14.9 40 7-46 389-428 (650)
118 cd07671 F-BAR_PSTPIP1 The F-BA 71.3 34 0.00074 36.9 10.5 78 5-90 109-196 (242)
119 PF09726 Macoilin: Transmembra 70.9 56 0.0012 40.6 13.4 50 41-91 420-476 (697)
120 cd07619 BAR_Rich2 The Bin/Amph 70.8 1.1E+02 0.0025 33.6 14.3 17 11-27 86-102 (248)
121 PF09787 Golgin_A5: Golgin sub 70.7 2.3E+02 0.0051 33.7 18.9 124 67-206 215-350 (511)
122 KOG0962 DNA repair protein RAD 70.5 1E+02 0.0022 40.8 15.9 62 5-68 888-949 (1294)
123 cd07671 F-BAR_PSTPIP1 The F-BA 70.3 68 0.0015 34.7 12.5 53 38-97 73-125 (242)
124 KOG2685 Cystoskeletal protein 70.2 1.7E+02 0.0037 34.5 16.2 79 9-88 87-187 (421)
125 PTZ00108 DNA topoisomerase 2-l 70.2 3.8E+02 0.0082 36.3 20.9 110 40-150 996-1122(1388)
126 KOG4302 Microtubule-associated 70.2 2.9E+02 0.0062 34.5 21.2 201 5-211 170-446 (660)
127 COG5185 HEC1 Protein involved 70.1 27 0.00058 41.5 9.9 124 82-207 305-465 (622)
128 PF05597 Phasin: Poly(hydroxya 70.0 76 0.0017 31.8 11.8 97 19-153 35-132 (132)
129 KOG0624 dsRNA-activated protei 70.0 32 0.0007 39.8 10.3 24 52-75 152-175 (504)
130 cd07598 BAR_FAM92 The Bin/Amph 69.9 23 0.00049 37.7 8.7 25 8-32 78-102 (211)
131 KOG0977 Nuclear envelope prote 69.7 22 0.00048 42.8 9.4 53 94-146 231-291 (546)
132 KOG1029 Endocytic adaptor prot 69.6 95 0.0021 39.2 14.5 78 74-151 471-570 (1118)
133 COG0419 SbcC ATPase involved i 69.5 76 0.0017 40.0 14.5 18 132-149 690-707 (908)
134 PF07083 DUF1351: Protein of u 69.4 1.1E+02 0.0024 32.6 13.6 66 35-100 38-110 (215)
135 PF06160 EzrA: Septation ring 69.3 2.5E+02 0.0054 33.9 18.0 33 175-207 450-482 (560)
136 PRK11637 AmiB activator; Provi 69.1 91 0.002 35.8 13.9 19 76-94 111-129 (428)
137 KOG0933 Structural maintenance 68.7 82 0.0018 40.7 14.1 116 54-187 375-500 (1174)
138 PF10186 Atg14: UV radiation r 68.6 1.3E+02 0.0027 32.0 14.0 18 6-23 31-48 (302)
139 PF09789 DUF2353: Uncharacteri 68.4 2.2E+02 0.0048 32.5 18.1 66 131-206 134-223 (319)
140 KOG0995 Centromere-associated 68.1 1.3E+02 0.0027 36.8 15.0 26 124-149 447-472 (581)
141 PF09726 Macoilin: Transmembra 67.3 70 0.0015 39.7 13.2 20 47-66 457-476 (697)
142 TIGR00293 prefoldin, archaeal 67.0 18 0.00039 34.5 6.7 32 118-149 81-112 (126)
143 PF07851 TMPIT: TMPIT-like pro 66.9 47 0.001 37.8 10.8 57 45-101 38-94 (330)
144 PF06008 Laminin_I: Laminin Do 66.7 1.5E+02 0.0032 32.0 14.2 181 6-207 56-244 (264)
145 KOG4364 Chromatin assembly fac 66.6 65 0.0014 39.8 12.3 28 153-180 353-380 (811)
146 PF10267 Tmemb_cc2: Predicted 66.3 1.6E+02 0.0035 34.5 15.1 22 158-179 297-318 (395)
147 smart00787 Spc7 Spc7 kinetocho 66.3 2.3E+02 0.005 32.1 15.9 80 45-151 181-260 (312)
148 cd07658 F-BAR_NOSTRIN The F-BA 66.2 1.7E+02 0.0037 31.4 14.4 44 17-60 52-98 (239)
149 cd07681 F-BAR_PACSIN3 The F-BA 66.2 1.6E+02 0.0034 32.6 14.3 41 11-57 7-47 (258)
150 KOG0994 Extracellular matrix g 66.1 1E+02 0.0022 40.5 14.1 13 5-17 1545-1557(1758)
151 KOG0979 Structural maintenance 66.1 3E+02 0.0066 35.9 18.2 32 38-69 705-736 (1072)
152 PF05791 Bacillus_HBL: Bacillu 65.5 55 0.0012 33.9 10.2 76 11-94 75-150 (184)
153 COG1283 NptA Na+/phosphate sym 65.4 1E+02 0.0022 37.4 13.6 43 163-205 440-483 (533)
154 KOG0240 Kinesin (SMY1 subfamil 65.1 89 0.0019 38.1 13.0 30 46-75 355-384 (607)
155 KOG0977 Nuclear envelope prote 65.1 64 0.0014 39.1 11.9 62 129-190 168-236 (546)
156 smart00806 AIP3 Actin interact 65.0 1.3E+02 0.0028 35.6 14.0 77 3-95 211-293 (426)
157 COG2882 FliJ Flagellar biosynt 64.9 57 0.0012 33.4 10.0 124 41-191 14-138 (148)
158 PF13949 ALIX_LYPXL_bnd: ALIX 64.1 1.3E+02 0.0027 32.4 13.0 30 4-33 79-108 (296)
159 PF09789 DUF2353: Uncharacteri 64.0 1.3E+02 0.0028 34.3 13.5 135 48-206 14-167 (319)
160 PTZ00473 Plasmodium Vir superf 64.0 9.4 0.0002 44.2 4.8 136 11-175 68-215 (420)
161 KOG0804 Cytoplasmic Zn-finger 63.8 28 0.00061 41.0 8.5 31 16-46 328-358 (493)
162 KOG4643 Uncharacterized coiled 63.4 1E+02 0.0023 39.8 13.6 74 13-91 383-462 (1195)
163 KOG0964 Structural maintenance 63.3 1.7E+02 0.0037 38.0 15.3 85 119-203 428-520 (1200)
164 PF09755 DUF2046: Uncharacteri 63.3 72 0.0016 36.2 11.2 81 131-211 85-177 (310)
165 PF15188 CCDC-167: Coiled-coil 62.8 68 0.0015 30.2 9.3 44 7-50 3-47 (85)
166 cd07647 F-BAR_PSTPIP The F-BAR 62.5 1E+02 0.0022 32.9 11.8 47 174-225 190-236 (239)
167 PF04286 DUF445: Protein of un 62.4 2.4E+02 0.0051 30.7 15.9 12 164-175 303-314 (367)
168 PF04136 Sec34: Sec34-like fam 62.4 35 0.00076 34.6 8.0 86 124-210 15-115 (157)
169 PF05010 TACC: Transforming ac 62.3 2.3E+02 0.0049 30.5 14.8 42 158-202 160-201 (207)
170 PF12297 EVC2_like: Ellis van 61.5 2.9E+02 0.0063 32.8 15.9 58 24-82 214-271 (429)
171 PF06657 Cep57_MT_bd: Centroso 61.1 48 0.001 30.3 7.9 57 9-65 13-76 (79)
172 COG2433 Uncharacterized conser 60.9 58 0.0013 39.9 10.6 8 56-63 432-439 (652)
173 cd09238 V_Alix_like_1 Protein- 60.9 2.1E+02 0.0045 32.4 14.4 16 192-207 322-337 (339)
174 PF04740 LXG: LXG domain of WX 60.6 1.2E+02 0.0026 31.0 11.6 38 38-75 9-47 (204)
175 PF00038 Filament: Intermediat 60.5 2.5E+02 0.0055 30.5 17.5 32 119-150 184-215 (312)
176 TIGR02894 DNA_bind_RsfA transc 60.0 1.2E+02 0.0026 31.7 11.2 37 12-48 17-63 (161)
177 TIGR01843 type_I_hlyD type I s 59.7 67 0.0015 35.6 10.4 8 103-110 187-194 (423)
178 COG2433 Uncharacterized conser 58.9 43 0.00093 40.9 9.1 141 34-181 337-503 (652)
179 PF05667 DUF812: Protein of un 58.8 59 0.0013 39.7 10.4 81 120-201 325-405 (594)
180 PF10168 Nup88: Nuclear pore c 58.8 1.9E+02 0.004 36.3 14.7 18 132-149 641-658 (717)
181 PTZ00332 paraflagellar rod pro 58.5 2.6E+02 0.0056 34.0 14.9 72 130-209 324-399 (589)
182 KOG0980 Actin-binding protein 58.3 1.6E+02 0.0035 37.6 13.9 53 10-62 348-405 (980)
183 KOG0982 Centrosomal protein Nu 58.0 1.9E+02 0.0041 34.5 13.6 24 40-63 326-349 (502)
184 KOG0979 Structural maintenance 57.9 2.9E+02 0.0063 36.0 16.0 63 63-137 238-301 (1072)
185 COG3883 Uncharacterized protei 57.8 3.1E+02 0.0068 30.7 14.9 53 128-188 139-191 (265)
186 PRK00286 xseA exodeoxyribonucl 57.8 3.4E+02 0.0073 31.4 15.8 42 14-63 258-299 (438)
187 PF14362 DUF4407: Domain of un 57.8 1.3E+02 0.0027 32.9 11.9 35 113-147 179-213 (301)
188 PF15070 GOLGA2L5: Putative go 57.7 1.1E+02 0.0023 37.7 12.3 38 157-194 120-157 (617)
189 KOG0612 Rho-associated, coiled 57.6 56 0.0012 42.7 10.1 24 126-149 619-642 (1317)
190 KOG0976 Rho/Rac1-interacting s 57.4 69 0.0015 40.5 10.5 156 38-201 286-491 (1265)
191 PF14182 YgaB: YgaB-like prote 57.2 46 0.001 31.0 7.0 31 52-90 39-69 (79)
192 KOG0681 Actin-related protein 57.0 38 0.00083 41.0 8.2 68 16-92 248-317 (645)
193 PRK04863 mukB cell division pr 56.9 3.5E+02 0.0076 36.8 17.5 17 192-208 553-569 (1486)
194 PF10211 Ax_dynein_light: Axon 56.0 1.3E+02 0.0029 31.4 11.1 22 119-140 166-187 (189)
195 TIGR01612 235kDa-fam reticuloc 56.0 3.3E+02 0.0072 38.7 16.8 62 171-232 1296-1361(2757)
196 cd07651 F-BAR_PombeCdc15_like 55.9 2E+02 0.0043 30.5 12.6 47 174-225 187-233 (236)
197 cd07651 F-BAR_PombeCdc15_like 55.9 68 0.0015 33.9 9.2 28 6-33 111-138 (236)
198 PF03114 BAR: BAR domain; Int 55.9 69 0.0015 31.8 8.8 86 9-95 131-218 (229)
199 PF00435 Spectrin: Spectrin re 55.9 5.4 0.00012 34.4 0.9 51 52-102 3-54 (105)
200 PRK09039 hypothetical protein; 55.8 1.9E+02 0.004 33.0 13.1 41 160-202 159-199 (343)
201 PF07798 DUF1640: Protein of u 55.7 2.4E+02 0.0053 28.9 12.8 18 161-178 140-157 (177)
202 PF06798 PrkA: PrkA serine pro 55.5 3.2E+02 0.0069 30.1 15.7 43 159-207 191-235 (254)
203 PF09745 DUF2040: Coiled-coil 55.5 57 0.0012 32.5 7.9 91 6-102 2-124 (127)
204 cd07627 BAR_Vps5p The Bin/Amph 55.2 2.2E+02 0.0049 29.9 12.8 23 10-32 59-81 (216)
205 KOG0804 Cytoplasmic Zn-finger 55.1 53 0.0012 38.9 8.8 34 74-108 327-360 (493)
206 PF10368 YkyA: Putative cell-w 55.0 36 0.00078 36.0 6.9 61 46-109 82-143 (204)
207 TIGR00255 conserved hypothetic 54.9 1.2E+02 0.0026 34.0 11.2 111 42-179 153-291 (291)
208 PF08385 DHC_N1: Dynein heavy 54.6 4.1E+02 0.0089 31.1 16.7 64 119-182 346-419 (579)
209 smart00126 IL6 Interleukin-6 h 54.5 61 0.0013 33.3 8.2 53 12-66 53-106 (154)
210 PRK10865 protein disaggregatio 54.1 3.3E+02 0.0072 34.7 16.0 51 46-99 413-463 (857)
211 cd09236 V_AnPalA_UmRIM20_like 53.9 2.6E+02 0.0055 31.8 13.8 16 192-207 336-351 (353)
212 PF11559 ADIP: Afadin- and alp 53.9 89 0.0019 30.8 9.1 86 5-93 62-147 (151)
213 TIGR02449 conserved hypothetic 53.7 1.2E+02 0.0026 27.3 8.9 23 76-98 43-65 (65)
214 KOG0260 RNA polymerase II, lar 53.5 1.4E+02 0.003 39.4 12.5 21 43-63 920-940 (1605)
215 PF14523 Syntaxin_2: Syntaxin- 53.4 25 0.00053 32.1 4.8 57 6-62 37-94 (102)
216 KOG2150 CCR4-NOT transcription 53.4 6.9 0.00015 46.9 1.6 76 2-79 146-221 (575)
217 cd07600 BAR_Gvp36 The Bin/Amph 53.1 91 0.002 34.0 9.7 89 9-98 147-235 (242)
218 cd07655 F-BAR_PACSIN The F-BAR 53.0 67 0.0014 34.7 8.7 56 6-61 123-190 (258)
219 PF11166 DUF2951: Protein of u 53.0 40 0.00086 32.4 6.1 57 9-68 21-78 (98)
220 PF07889 DUF1664: Protein of u 53.0 48 0.001 33.1 7.0 70 124-204 37-107 (126)
221 cd07593 BAR_MUG137_fungi The B 52.8 1E+02 0.0022 33.1 9.8 86 9-98 114-201 (215)
222 PF07464 ApoLp-III: Apolipopho 52.8 72 0.0016 32.7 8.4 106 16-148 3-117 (155)
223 cd07600 BAR_Gvp36 The Bin/Amph 52.5 2.6E+02 0.0057 30.6 13.0 43 11-60 112-154 (242)
224 PRK07720 fliJ flagellar biosyn 52.3 1.9E+02 0.0041 28.4 11.1 116 40-182 13-129 (146)
225 KOG2273 Membrane coat complex 52.3 4.3E+02 0.0093 31.1 15.7 17 193-209 464-480 (503)
226 KOG0579 Ste20-like serine/thre 51.9 4.5E+02 0.0097 33.4 15.8 60 4-63 799-870 (1187)
227 PF15397 DUF4618: Domain of un 51.8 2.1E+02 0.0045 31.9 12.2 27 124-150 194-220 (258)
228 PRK10780 periplasmic chaperone 51.7 1.5E+02 0.0033 29.9 10.5 90 6-104 43-139 (165)
229 cd07594 BAR_Endophilin_B The B 51.4 1.1E+02 0.0024 33.1 10.0 88 9-98 133-222 (229)
230 PF09731 Mitofilin: Mitochondr 51.4 5E+02 0.011 31.1 18.7 13 178-190 414-426 (582)
231 PRK05287 hypothetical protein; 51.4 56 0.0012 35.9 7.8 123 46-190 57-181 (250)
232 KOG0978 E3 ubiquitin ligase in 51.2 5.4E+02 0.012 32.5 16.6 174 10-186 354-572 (698)
233 KOG3850 Predicted membrane pro 51.0 51 0.0011 38.4 7.7 52 132-183 312-370 (455)
234 PF11500 Cut12: Spindle pole b 50.8 52 0.0011 33.8 7.0 26 42-67 76-101 (152)
235 KOG4673 Transcription factor T 50.4 6.4E+02 0.014 32.1 17.0 14 7-20 344-357 (961)
236 KOG1850 Myosin-like coiled-coi 50.4 4.6E+02 0.01 30.4 18.7 38 166-203 292-330 (391)
237 PF13514 AAA_27: AAA domain 49.7 3.7E+02 0.0081 35.0 15.9 48 51-98 820-870 (1111)
238 PF12729 4HB_MCP_1: Four helix 49.3 2.3E+02 0.005 26.6 14.0 24 11-34 77-100 (181)
239 PF05082 Rop-like: Rop-like; 49.1 18 0.0004 32.5 3.1 21 46-66 5-25 (66)
240 PF07072 DUF1342: Protein of u 48.9 30 0.00065 36.9 5.3 47 46-93 39-86 (211)
241 cd07653 F-BAR_CIP4-like The F- 48.3 1.3E+02 0.0028 31.8 9.9 31 5-35 115-145 (251)
242 PF13863 DUF4200: Domain of un 48.2 1.1E+02 0.0025 28.9 8.6 23 76-98 15-37 (126)
243 KOG0247 Kinesin-like protein [ 48.1 3.5E+02 0.0075 34.4 14.3 35 76-110 542-576 (809)
244 KOG0260 RNA polymerase II, lar 48.1 1.6E+02 0.0034 39.0 11.8 12 19-30 1155-1166(1605)
245 COG1340 Uncharacterized archae 48.0 4.4E+02 0.0096 30.0 14.1 25 175-199 264-289 (294)
246 PF14282 FlxA: FlxA-like prote 47.5 31 0.00068 32.8 4.7 57 129-185 18-77 (106)
247 PLN03223 Polycystin cation cha 46.6 2.7E+02 0.0058 37.6 13.6 52 47-98 1442-1516(1634)
248 PRK10361 DNA recombination pro 46.3 4.3E+02 0.0094 31.8 14.5 29 124-152 134-162 (475)
249 KOG0239 Kinesin (KAR3 subfamil 46.2 4.6E+02 0.01 32.8 15.2 25 40-64 176-200 (670)
250 cd07610 FCH_F-BAR The Extended 46.1 3.2E+02 0.0069 27.3 16.7 40 11-56 2-41 (191)
251 PF00509 Hemagglutinin: Haemag 46.0 3.8 8.2E-05 48.8 -2.0 53 158-211 402-459 (550)
252 TIGR01843 type_I_hlyD type I s 45.8 2.7E+02 0.0058 31.0 12.2 27 39-65 81-107 (423)
253 cd07623 BAR_SNX1_2 The Bin/Amp 45.8 3.7E+02 0.008 28.6 12.7 94 13-144 120-218 (224)
254 cd07610 FCH_F-BAR The Extended 45.7 3.2E+02 0.007 27.2 13.1 18 192-209 158-175 (191)
255 PF06248 Zw10: Centromere/kine 45.6 3.1E+02 0.0066 33.1 13.4 52 47-98 11-62 (593)
256 PRK00409 recombination and DNA 45.4 5E+02 0.011 32.9 15.6 21 128-148 575-595 (782)
257 TIGR00634 recN DNA repair prot 45.3 2.4E+02 0.0052 33.8 12.5 47 18-64 156-203 (563)
258 KOG4429 Uncharacterized conser 45.1 2.3E+02 0.005 32.4 11.3 27 159-185 140-166 (421)
259 cd07664 BAR_SNX2 The Bin/Amphi 44.9 3.8E+02 0.0083 29.1 12.8 38 54-92 160-197 (234)
260 PF02050 FliJ: Flagellar FliJ 44.9 2.3E+02 0.005 25.4 9.8 32 119-150 48-79 (123)
261 PF06705 SF-assemblin: SF-asse 44.8 4.2E+02 0.0092 28.4 16.5 46 159-207 143-189 (247)
262 COG1579 Zn-ribbon protein, pos 44.5 4.7E+02 0.01 28.9 16.4 24 127-150 93-116 (239)
263 PF09731 Mitofilin: Mitochondr 44.4 6.3E+02 0.014 30.3 17.5 48 18-65 225-273 (582)
264 PF02185 HR1: Hr1 repeat; Int 44.2 83 0.0018 27.6 6.4 58 6-68 5-62 (70)
265 KOG1451 Oligophrenin-1 and rel 44.2 5.8E+02 0.013 31.9 15.0 152 9-183 27-183 (812)
266 PF08376 NIT: Nitrate and nitr 44.1 1.4E+02 0.003 30.4 9.1 82 16-98 157-239 (247)
267 COG4913 Uncharacterized protei 44.1 2.1E+02 0.0045 36.3 11.6 165 14-190 230-415 (1104)
268 COG0216 PrfA Protein chain rel 43.5 3.8E+02 0.0083 31.2 12.9 99 14-150 5-103 (363)
269 PF14817 HAUS5: HAUS augmin-li 43.4 6.7E+02 0.014 31.3 15.8 28 74-101 144-171 (632)
270 PF09325 Vps5: Vps5 C terminal 43.1 4E+02 0.0086 27.5 16.0 53 157-209 161-219 (236)
271 KOG0963 Transcription factor/C 43.1 7.6E+02 0.017 30.8 16.0 137 39-187 288-439 (629)
272 PF13949 ALIX_LYPXL_bnd: ALIX 43.0 4.6E+02 0.0099 28.2 15.8 75 20-94 22-103 (296)
273 PF02994 Transposase_22: L1 tr 42.9 29 0.00063 39.6 4.3 20 47-68 51-70 (370)
274 PF00804 Syntaxin: Syntaxin; 42.8 2.4E+02 0.0052 24.9 11.4 56 9-65 10-68 (103)
275 KOG0971 Microtubule-associated 42.8 4.5E+02 0.0097 34.3 14.2 32 159-190 518-549 (1243)
276 cd07634 BAR_GAP10-like The Bin 42.8 4.7E+02 0.01 28.3 13.4 65 140-208 121-188 (207)
277 PF05622 HOOK: HOOK protein; 42.6 8.2 0.00018 47.1 0.0 20 129-148 362-381 (713)
278 TIGR00634 recN DNA repair prot 42.5 2.2E+02 0.0047 34.2 11.6 13 128-140 282-294 (563)
279 PF05483 SCP-1: Synaptonemal c 42.5 1.9E+02 0.0041 36.2 11.0 165 10-178 514-719 (786)
280 COG0598 CorA Mg2+ and Co2+ tra 42.5 93 0.002 34.5 8.0 63 124-189 148-210 (322)
281 PF04108 APG17: Autophagy prot 42.4 2.9E+02 0.0062 32.2 12.1 124 9-145 251-382 (412)
282 cd07627 BAR_Vps5p The Bin/Amph 42.1 4.4E+02 0.0095 27.8 15.6 77 132-209 117-199 (216)
283 KOG4677 Golgi integral membran 42.1 5.4E+02 0.012 31.1 14.0 37 9-45 189-230 (554)
284 KOG1265 Phospholipase C [Lipid 41.8 3.6E+02 0.0077 35.1 13.2 50 85-148 1100-1150(1189)
285 PF13166 AAA_13: AAA domain 41.8 7.2E+02 0.016 30.2 18.4 67 74-150 324-390 (712)
286 cd00238 ERp29c ERp29 and ERp38 41.8 90 0.002 29.3 6.6 39 164-202 48-87 (93)
287 COG5394 Uncharacterized protei 41.6 1.7E+02 0.0036 30.9 9.0 92 43-148 99-192 (193)
288 PF14735 HAUS4: HAUS augmin-li 41.4 5.2E+02 0.011 28.4 13.4 82 5-90 39-121 (238)
289 PRK03598 putative efflux pump 41.1 4.2E+02 0.0092 29.1 12.7 45 133-180 155-199 (331)
290 cd07673 F-BAR_FCHO2 The F-BAR 41.0 1.4E+02 0.0031 32.6 9.0 75 7-86 155-240 (269)
291 PRK07737 fliD flagellar cappin 41.0 7.1E+02 0.015 29.9 15.4 28 7-34 266-293 (501)
292 PF05266 DUF724: Protein of un 40.9 4E+02 0.0086 28.2 11.9 119 46-208 53-174 (190)
293 cd07635 BAR_GRAF2 The Bin/Amph 40.9 5E+02 0.011 28.1 14.4 45 160-207 141-187 (207)
294 PF01920 Prefoldin_2: Prefoldi 40.6 90 0.002 28.3 6.4 85 51-148 3-87 (106)
295 PRK11281 hypothetical protein; 40.5 1E+03 0.023 31.7 18.5 55 44-100 126-181 (1113)
296 PF06013 WXG100: Proteins of 1 40.5 2.2E+02 0.0047 23.9 8.4 64 122-185 10-74 (86)
297 PF14389 Lzipper-MIP1: Leucine 40.4 3.1E+02 0.0067 25.6 10.4 15 42-56 7-21 (88)
298 cd07649 F-BAR_GAS7 The F-BAR ( 40.4 3E+02 0.0065 29.8 11.1 56 6-61 111-176 (233)
299 PF04740 LXG: LXG domain of WX 40.2 1.9E+02 0.0042 29.4 9.4 57 42-98 98-168 (204)
300 PF02601 Exonuc_VII_L: Exonucl 40.1 5.4E+02 0.012 28.3 13.9 17 169-185 257-273 (319)
301 PF05622 HOOK: HOOK protein; 40.0 9.5 0.00021 46.5 0.0 27 159-185 481-507 (713)
302 KOG3540 Beta amyloid precursor 39.9 1.2E+02 0.0026 36.5 8.6 60 74-149 255-323 (615)
303 PF05008 V-SNARE: Vesicle tran 39.9 1.8E+02 0.004 25.5 8.0 54 10-63 22-78 (79)
304 cd07647 F-BAR_PSTPIP The F-BAR 39.9 5E+02 0.011 27.8 14.9 50 10-71 6-55 (239)
305 COG4911 Uncharacterized conser 39.8 59 0.0013 32.0 5.2 67 122-195 14-81 (123)
306 PRK10869 recombination and rep 39.8 3E+02 0.0064 33.3 12.1 28 122-149 271-298 (553)
307 KOG1655 Protein involved in va 39.8 1.4E+02 0.0031 32.2 8.4 35 177-211 108-144 (218)
308 PF07889 DUF1664: Protein of u 39.6 2.7E+02 0.006 27.9 9.9 30 62-91 25-55 (126)
309 TIGR00020 prfB peptide chain r 39.5 2.3E+02 0.005 32.9 10.7 16 122-137 137-152 (364)
310 PRK11820 hypothetical protein; 39.4 3.5E+02 0.0076 30.3 11.8 110 42-179 151-288 (288)
311 cd07636 BAR_GRAF The Bin/Amphi 39.3 5.3E+02 0.011 27.9 14.9 67 139-208 120-188 (207)
312 PF05278 PEARLI-4: Arabidopsis 39.3 84 0.0018 35.1 6.9 51 42-92 210-262 (269)
313 KOG4398 Predicted coiled-coil 38.6 59 0.0013 36.6 5.6 51 129-183 4-54 (359)
314 PF15254 CCDC14: Coiled-coil d 38.5 5.9E+02 0.013 32.6 14.3 60 9-68 356-420 (861)
315 COG3352 FlaC Putative archaeal 38.4 2.7E+02 0.0058 29.1 9.7 23 129-151 78-100 (157)
316 PF03980 Nnf1: Nnf1 ; InterPr 38.4 3.4E+02 0.0075 25.5 12.6 87 42-149 13-99 (109)
317 TIGR03007 pepcterm_ChnLen poly 38.3 7E+02 0.015 29.0 16.8 23 40-62 169-191 (498)
318 cd00179 SynN Syntaxin N-termin 38.2 1.8E+02 0.0038 28.1 8.4 57 7-63 49-112 (151)
319 cd07665 BAR_SNX1 The Bin/Amphi 38.1 3.3E+02 0.0072 29.7 11.1 71 54-146 160-230 (234)
320 PF00435 Spectrin: Spectrin re 37.9 2.3E+02 0.005 24.3 8.2 42 161-204 43-84 (105)
321 cd07650 F-BAR_Syp1p_like The F 37.8 5.4E+02 0.012 27.5 14.3 45 158-210 171-223 (228)
322 PRK13182 racA polar chromosome 37.7 78 0.0017 33.0 6.1 45 56-100 95-143 (175)
323 KOG2117 Uncharacterized conser 37.6 97 0.0021 35.9 7.3 36 1-36 44-82 (379)
324 PF03528 Rabaptin: Rabaptin; 37.4 1.4E+02 0.003 29.2 7.3 33 3-35 18-50 (106)
325 PRK09793 methyl-accepting prot 37.2 2.3E+02 0.0049 33.4 10.5 65 9-73 81-146 (533)
326 PF05565 Sipho_Gp157: Siphovir 37.1 2.3E+02 0.005 28.9 9.2 40 54-93 41-82 (162)
327 cd07667 BAR_SNX30 The Bin/Amph 37.1 4.6E+02 0.01 28.9 12.0 22 125-146 176-197 (240)
328 PF04136 Sec34: Sec34-like fam 36.9 2.1E+02 0.0046 29.1 8.9 72 6-100 11-84 (157)
329 PF08376 NIT: Nitrate and nitr 36.6 4.8E+02 0.01 26.6 12.4 141 52-204 5-165 (247)
330 KOG4302 Microtubule-associated 36.5 9.8E+02 0.021 30.2 16.7 19 76-94 111-129 (660)
331 COG1842 PspA Phage shock prote 36.1 4.4E+02 0.0095 28.6 11.5 23 76-98 39-61 (225)
332 PF15066 CAGE1: Cancer-associa 36.0 5E+02 0.011 31.5 12.6 33 118-150 466-498 (527)
333 cd07676 F-BAR_FBP17 The F-BAR 35.8 6.2E+02 0.013 27.7 15.2 65 23-90 67-132 (253)
334 PF09728 Taxilin: Myosin-like 35.6 6.9E+02 0.015 28.2 14.5 26 163-188 283-308 (309)
335 PF05008 V-SNARE: Vesicle tran 35.6 2.3E+02 0.005 24.9 7.9 58 119-183 21-78 (79)
336 PF13851 GAS: Growth-arrest sp 35.5 5.6E+02 0.012 27.1 19.0 27 184-210 169-195 (201)
337 PF13094 CENP-Q: CENP-Q, a CEN 35.5 4.7E+02 0.01 26.2 13.2 26 41-66 50-75 (160)
338 cd01111 HTH_MerD Helix-Turn-He 35.2 91 0.002 29.6 5.7 29 38-66 79-107 (107)
339 PF09597 IGR: IGR protein moti 35.1 56 0.0012 28.6 3.9 25 68-92 31-55 (57)
340 PF10224 DUF2205: Predicted co 35.0 1.6E+02 0.0034 27.5 6.9 47 12-71 19-69 (80)
341 PF06729 CENP-R: Kinetochore c 34.6 95 0.0021 31.6 5.9 57 9-65 59-124 (139)
342 PF08397 IMD: IRSp53/MIM homol 34.5 3.1E+02 0.0067 28.9 10.0 25 76-108 62-86 (219)
343 PF13863 DUF4200: Domain of un 34.3 1.7E+02 0.0036 27.8 7.3 21 76-96 36-56 (126)
344 TIGR02231 conserved hypothetic 34.3 4.4E+02 0.0096 31.2 12.3 24 164-187 150-173 (525)
345 KOG2856 Adaptor protein PACSIN 34.3 8.6E+02 0.019 28.9 20.7 22 12-33 17-38 (472)
346 PLN03237 DNA topoisomerase 2; 34.1 1.4E+03 0.031 31.4 20.1 21 129-149 1125-1145(1465)
347 PF13654 AAA_32: AAA domain; P 34.0 14 0.00029 44.0 0.0 63 47-112 88-157 (509)
348 PRK09546 zntB zinc transporter 34.0 3.3E+02 0.0072 30.1 10.6 58 127-188 154-211 (324)
349 PF02609 Exonuc_VII_S: Exonucl 33.9 65 0.0014 27.0 4.0 36 173-208 3-39 (53)
350 PRK13415 flagella biosynthesis 33.8 86 0.0019 34.0 5.8 52 9-62 144-206 (219)
351 PRK13411 molecular chaperone D 33.8 2.3E+02 0.0049 34.8 10.0 36 52-88 557-592 (653)
352 PRK10361 DNA recombination pro 33.7 65 0.0014 38.4 5.3 78 8-90 135-221 (475)
353 cd00089 HR1 Protein kinase C-r 33.7 1.7E+02 0.0038 25.7 6.8 59 5-66 5-69 (72)
354 PF00261 Tropomyosin: Tropomyo 33.6 6.2E+02 0.014 27.1 13.4 23 6-28 5-27 (237)
355 KOG0964 Structural maintenance 33.4 5.5E+02 0.012 33.8 13.1 148 41-209 673-825 (1200)
356 PRK05183 hscA chaperone protei 33.1 1.5E+02 0.0032 36.1 8.3 38 51-91 558-595 (616)
357 PF05911 DUF869: Plant protein 33.1 2.8E+02 0.0061 35.2 10.8 142 39-185 603-759 (769)
358 KOG2273 Membrane coat complex 32.9 3.4E+02 0.0074 31.9 11.0 38 176-213 431-469 (503)
359 KOG0982 Centrosomal protein Nu 32.9 7.9E+02 0.017 29.6 13.5 49 83-146 286-334 (502)
360 smart00503 SynN Syntaxin N-ter 32.8 1.5E+02 0.0032 27.3 6.6 57 7-63 51-113 (117)
361 KOG1265 Phospholipase C [Lipid 32.6 6.7E+02 0.015 32.8 13.5 68 30-100 1069-1142(1189)
362 PF09177 Syntaxin-6_N: Syntaxi 32.6 2E+02 0.0043 26.7 7.3 46 160-205 40-89 (97)
363 PF14282 FlxA: FlxA-like prote 32.5 1E+02 0.0022 29.5 5.5 26 42-70 18-43 (106)
364 cd07648 F-BAR_FCHO The F-BAR ( 32.5 1.9E+02 0.0041 31.1 8.2 31 5-35 112-142 (261)
365 TIGR02132 phaR_Bmeg polyhydrox 32.4 4.9E+02 0.011 27.9 10.7 117 59-207 34-156 (189)
366 PF05852 DUF848: Gammaherpesvi 32.3 1.9E+02 0.004 29.8 7.6 23 127-149 58-80 (146)
367 PF04949 Transcrip_act: Transc 32.3 89 0.0019 32.3 5.3 56 78-149 48-103 (159)
368 PF05974 DUF892: Domain of unk 32.2 2.1E+02 0.0046 28.9 8.0 45 164-208 40-86 (159)
369 cd07680 F-BAR_PACSIN1 The F-BA 32.2 7.4E+02 0.016 27.5 18.0 147 12-203 8-178 (258)
370 TIGR02977 phageshock_pspA phag 32.2 3.6E+02 0.0078 28.5 10.1 26 124-149 100-125 (219)
371 PF10146 zf-C4H2: Zinc finger- 32.2 7E+02 0.015 27.2 12.9 16 131-146 54-69 (230)
372 PF05667 DUF812: Protein of un 32.1 8.9E+02 0.019 30.0 14.5 45 141-185 472-517 (594)
373 PF09210 DUF1957: Domain of un 32.1 66 0.0014 30.8 4.2 36 164-199 53-88 (102)
374 KOG2991 Splicing regulator [RN 32.0 4.7E+02 0.01 29.6 11.0 93 42-149 180-276 (330)
375 PF05781 MRVI1: MRVI1 protein; 31.8 4.5E+02 0.0097 32.2 11.6 47 9-56 191-237 (538)
376 PF07851 TMPIT: TMPIT-like pro 31.8 97 0.0021 35.4 6.1 15 50-64 36-50 (330)
377 cd07909 YciF YciF bacterial st 31.7 1.9E+02 0.0042 29.3 7.6 48 162-209 36-85 (147)
378 PF03938 OmpH: Outer membrane 31.5 3.7E+02 0.0081 26.3 9.5 59 10-74 23-81 (158)
379 PF00489 IL6: Interleukin-6/G- 31.5 1.8E+02 0.004 29.5 7.5 52 11-64 52-104 (154)
380 cd07605 I-BAR_IMD Inverse (I)- 31.4 7.1E+02 0.015 27.1 14.2 62 76-151 72-140 (223)
381 cd07676 F-BAR_FBP17 The F-BAR 31.4 2.5E+02 0.0055 30.7 9.0 34 4-37 116-149 (253)
382 cd04770 HTH_HMRTR Helix-Turn-H 31.4 91 0.002 29.6 5.1 23 45-67 88-110 (123)
383 PRK08476 F0F1 ATP synthase sub 31.3 3.1E+02 0.0066 27.3 8.9 10 133-142 121-130 (141)
384 cd07672 F-BAR_PSTPIP2 The F-BA 31.3 3.9E+02 0.0085 29.0 10.3 10 41-50 127-136 (240)
385 PF06810 Phage_GP20: Phage min 31.3 48 0.001 33.7 3.3 50 163-214 86-137 (155)
386 PF06810 Phage_GP20: Phage min 31.1 1.6E+02 0.0035 30.0 7.0 54 11-69 4-67 (155)
387 TIGR03687 pupylate_cterm ubiqu 31.0 17 0.00038 28.7 0.1 22 193-214 3-24 (33)
388 PF10146 zf-C4H2: Zinc finger- 31.0 4.8E+02 0.01 28.5 10.9 44 127-178 57-100 (230)
389 KOG0239 Kinesin (KAR3 subfamil 30.9 3.8E+02 0.0081 33.5 11.3 18 132-149 243-260 (670)
390 COG3945 Uncharacterized conser 30.9 1.2E+02 0.0026 32.3 6.1 49 162-210 8-59 (189)
391 PRK12751 cpxP periplasmic stre 30.8 1.5E+02 0.0031 30.8 6.7 58 11-72 105-162 (162)
392 PF02388 FemAB: FemAB family; 30.8 1.1E+02 0.0024 35.1 6.6 62 122-188 241-302 (406)
393 cd07681 F-BAR_PACSIN3 The F-BA 30.8 5.8E+02 0.013 28.3 11.6 104 11-144 128-243 (258)
394 KOG4484 Uncharacterized conser 30.8 1.8E+02 0.0038 30.9 7.2 33 173-207 93-130 (199)
395 PF10136 SpecificRecomb: Site- 30.7 2.6E+02 0.0056 34.8 9.8 87 119-207 188-287 (643)
396 TIGR00237 xseA exodeoxyribonuc 30.7 7.9E+02 0.017 28.9 13.3 20 130-149 322-341 (432)
397 cd07675 F-BAR_FNBP1L The F-BAR 30.7 2.7E+02 0.0059 30.7 9.1 34 3-36 114-147 (252)
398 KOG0999 Microtubule-associated 30.7 8.9E+02 0.019 30.2 13.6 155 5-191 11-181 (772)
399 smart00721 BAR BAR domain. 30.6 2.3E+02 0.005 29.0 8.2 59 9-67 134-198 (239)
400 PF03234 CDC37_N: Cdc37 N term 30.6 4.4E+02 0.0095 27.8 10.2 22 164-185 129-150 (177)
401 PF04012 PspA_IM30: PspA/IM30 30.5 3.5E+02 0.0076 28.2 9.6 21 129-149 97-117 (221)
402 PRK04406 hypothetical protein; 30.5 1.6E+02 0.0035 26.8 6.2 47 131-185 5-51 (75)
403 PF05701 WEMBL: Weak chloropla 30.5 1E+03 0.022 28.6 16.3 22 41-62 213-234 (522)
404 PTZ00009 heat shock 70 kDa pro 30.4 2.2E+02 0.0048 34.8 9.3 35 41-75 552-592 (653)
405 PF14712 Snapin_Pallidin: Snap 30.4 4.2E+02 0.009 24.0 9.3 56 42-97 31-86 (92)
406 COG1382 GimC Prefoldin, chaper 30.4 3.4E+02 0.0074 27.1 8.8 19 131-149 71-89 (119)
407 KOG0249 LAR-interacting protei 30.1 3.8E+02 0.0082 34.0 10.8 44 162-207 233-276 (916)
408 PF12998 ING: Inhibitor of gro 29.9 4.3E+02 0.0093 24.0 10.5 35 56-90 36-72 (105)
409 cd07654 F-BAR_FCHSD The F-BAR 29.7 1.3E+02 0.0027 33.3 6.4 41 5-50 120-160 (264)
410 cd00584 Prefoldin_alpha Prefol 29.6 2.3E+02 0.0049 27.2 7.5 32 118-149 82-113 (129)
411 cd07639 BAR_ACAP1 The Bin/Amph 29.6 5E+02 0.011 27.8 10.6 28 157-184 131-160 (200)
412 PF11932 DUF3450: Protein of u 29.3 2.3E+02 0.005 30.4 8.2 21 48-68 61-81 (251)
413 PF01540 Lipoprotein_7: Adhesi 29.3 9E+02 0.02 27.6 13.0 64 167-232 253-319 (353)
414 PRK10328 DNA binding protein, 29.0 1.8E+02 0.0039 29.3 6.8 54 124-195 22-75 (134)
415 PRK10947 global DNA-binding tr 29.0 1.8E+02 0.004 29.3 6.9 30 166-195 46-75 (135)
416 PF13747 DUF4164: Domain of un 28.8 4.4E+02 0.0096 24.7 8.9 57 10-72 5-61 (89)
417 KOG0163 Myosin class VI heavy 28.8 1.3E+03 0.028 30.0 14.8 129 10-184 876-1014(1259)
418 TIGR02473 flagell_FliJ flagell 28.8 5.2E+02 0.011 24.6 10.5 30 120-149 65-94 (141)
419 PF10359 Fmp27_WPPW: RNA pol I 28.6 1.3E+02 0.0028 35.6 6.7 64 126-191 166-232 (475)
420 PF05557 MAD: Mitotic checkpoi 28.6 19 0.00041 44.1 0.0 26 6-31 97-122 (722)
421 COG5481 Uncharacterized conser 28.5 2.7E+02 0.0059 25.1 6.9 31 7-37 5-35 (67)
422 PF04286 DUF445: Protein of un 28.5 5.6E+02 0.012 27.9 11.1 23 115-137 202-224 (367)
423 PF10112 Halogen_Hydrol: 5-bro 28.5 2.2E+02 0.0047 29.5 7.6 83 126-208 71-171 (199)
424 PF11802 CENP-K: Centromere-as 28.4 98 0.0021 34.5 5.3 18 3-20 60-77 (268)
425 PF11068 YlqD: YlqD protein; 28.4 3.1E+02 0.0066 27.6 8.2 51 118-168 15-65 (131)
426 PF07058 Myosin_HC-like: Myosi 28.4 9.8E+02 0.021 27.7 13.1 124 51-192 36-169 (351)
427 PF02646 RmuC: RmuC family; I 28.3 1.4E+02 0.0031 33.1 6.7 47 8-59 1-47 (304)
428 PRK15041 methyl-accepting chem 28.2 4.3E+02 0.0093 31.5 10.9 62 10-71 86-148 (554)
429 KOG0978 E3 ubiquitin ligase in 28.2 1.3E+03 0.029 29.2 16.6 136 52-206 502-641 (698)
430 PF03357 Snf7: Snf7; InterPro 28.1 2.4E+02 0.0051 27.6 7.5 36 56-91 25-60 (171)
431 KOG3270 Uncharacterized conser 28.0 97 0.0021 34.2 5.1 66 17-93 89-154 (244)
432 PRK03830 small acid-soluble sp 28.0 2.2E+02 0.0048 26.4 6.5 52 5-63 12-63 (73)
433 PF07462 MSP1_C: Merozoite sur 28.0 1.2E+03 0.027 28.8 19.9 231 7-360 59-320 (574)
434 PRK10787 DNA-binding ATP-depen 28.0 2.4E+02 0.0053 35.5 9.2 28 40-67 209-239 (784)
435 TIGR01280 xseB exodeoxyribonuc 27.9 79 0.0017 28.1 3.7 37 174-210 6-43 (67)
436 cd07616 BAR_Endophilin_B1 The 27.8 4.8E+02 0.01 28.5 10.2 86 10-97 134-221 (229)
437 PF10458 Val_tRNA-synt_C: Valy 27.8 3E+02 0.0066 24.0 7.2 48 47-94 8-58 (66)
438 PF04012 PspA_IM30: PspA/IM30 27.6 7.2E+02 0.016 25.9 16.9 27 124-150 99-125 (221)
439 KOG3433 Protein involved in me 27.5 3.1E+02 0.0067 29.5 8.4 76 127-203 120-200 (203)
440 KOG3915 Transcription regulato 27.4 3.1E+02 0.0066 33.2 9.1 51 47-111 532-582 (641)
441 PF09548 Spore_III_AB: Stage I 27.4 3.7E+02 0.0079 27.4 8.9 30 4-33 59-93 (170)
442 PF05377 FlaC_arch: Flagella a 27.4 2.1E+02 0.0047 25.1 6.1 48 132-187 2-49 (55)
443 cd00176 SPEC Spectrin repeats, 27.4 5.7E+02 0.012 24.7 15.4 19 6-24 4-22 (213)
444 KOG0018 Structural maintenance 27.3 6.4E+02 0.014 33.4 12.4 36 55-90 713-750 (1141)
445 PF05833 FbpA: Fibronectin-bin 27.2 26 0.00057 40.0 0.8 50 41-90 301-355 (455)
446 COG4079 Uncharacterized protei 27.1 1.8E+02 0.0039 32.4 6.9 48 17-64 147-205 (293)
447 TIGR02350 prok_dnaK chaperone 27.0 2.7E+02 0.0059 33.4 9.0 24 49-72 550-573 (595)
448 PRK00290 dnaK molecular chaper 27.0 2.8E+02 0.0061 33.6 9.3 39 50-91 553-591 (627)
449 PF15294 Leu_zip: Leucine zipp 27.0 4.9E+02 0.011 29.4 10.3 98 48-149 130-227 (278)
450 KOG2072 Translation initiation 26.9 1.4E+03 0.031 29.8 14.9 38 80-117 620-665 (988)
451 PF07083 DUF1351: Protein of u 26.8 4.6E+02 0.01 28.0 9.8 23 123-145 82-104 (215)
452 KOG0018 Structural maintenance 26.8 1.3E+03 0.027 30.9 14.7 23 124-146 410-432 (1141)
453 TIGR01035 hemA glutamyl-tRNA r 26.8 2.5E+02 0.0053 32.5 8.4 63 60-150 298-361 (417)
454 cd01107 HTH_BmrR Helix-Turn-He 26.7 1.3E+02 0.0027 28.4 5.1 25 43-67 82-106 (108)
455 PF08580 KAR9: Yeast cortical 26.7 6.1E+02 0.013 31.9 12.0 31 3-33 30-60 (683)
456 PRK00977 exodeoxyribonuclease 26.7 82 0.0018 28.9 3.7 37 173-209 14-51 (80)
457 PRK14066 exodeoxyribonuclease 26.7 83 0.0018 28.7 3.7 37 173-209 8-45 (75)
458 PRK00286 xseA exodeoxyribonucl 26.7 7.8E+02 0.017 28.5 12.3 20 130-149 327-346 (438)
459 PRK00578 prfB peptide chain re 26.7 3.8E+02 0.0083 31.2 9.8 13 83-95 60-72 (367)
460 COG0497 RecN ATPase involved i 26.7 7.8E+02 0.017 30.4 12.6 27 119-145 269-295 (557)
461 KOG4031 Vesicle coat protein c 26.6 2.1E+02 0.0045 31.1 7.1 69 117-186 134-210 (216)
462 PF15070 GOLGA2L5: Putative go 26.5 1.3E+03 0.029 28.7 14.8 27 161-187 288-314 (617)
463 PF09325 Vps5: Vps5 C terminal 26.5 7.3E+02 0.016 25.6 16.8 23 128-150 168-190 (236)
464 PF03194 LUC7: LUC7 N_terminus 26.4 6.6E+02 0.014 27.6 11.1 95 40-180 75-170 (254)
465 KOG1937 Uncharacterized conser 26.4 2.5E+02 0.0054 33.7 8.2 171 2-200 144-349 (521)
466 PF05149 Flagellar_rod: Parafl 26.4 1E+03 0.022 27.2 16.3 42 159-207 98-139 (289)
467 PF02996 Prefoldin: Prefoldin 26.3 86 0.0019 29.3 3.9 32 118-149 72-103 (120)
468 KOG4673 Transcription factor T 26.2 1.3E+03 0.029 29.5 14.2 134 10-151 485-633 (961)
469 PF01627 Hpt: Hpt domain; Int 26.1 2.3E+02 0.0051 24.1 6.3 79 127-207 2-85 (90)
470 PF10473 CENP-F_leu_zip: Leuci 26.1 1.6E+02 0.0034 30.0 5.8 82 94-181 29-116 (140)
471 PF04943 Pox_F11: Poxvirus F11 26.0 1.8E+02 0.004 33.8 7.1 84 6-92 219-314 (366)
472 COG1722 XseB Exonuclease VII s 26.0 1.1E+02 0.0023 28.5 4.3 40 170-209 11-51 (81)
473 cd07601 BAR_APPL The Bin/Amphi 25.8 8.8E+02 0.019 26.3 12.8 38 167-207 149-186 (215)
474 TIGR00618 sbcc exonuclease Sbc 25.8 1.6E+03 0.034 29.3 18.5 83 18-100 706-803 (1042)
475 PF08514 STAG: STAG domain ; 25.7 1.2E+02 0.0025 29.6 4.7 47 122-169 71-117 (118)
476 PRK00409 recombination and DNA 25.7 7.5E+02 0.016 31.4 12.7 23 11-33 504-526 (782)
477 TIGR02680 conserved hypothetic 25.6 1.8E+03 0.039 29.9 17.0 30 57-86 315-344 (1353)
478 COG4477 EzrA Negative regulato 25.6 1.4E+03 0.029 28.4 15.9 56 9-68 167-222 (570)
479 KOG2391 Vacuolar sorting prote 25.6 3.8E+02 0.0083 31.2 9.3 17 77-93 216-232 (365)
480 TIGR00962 atpA proton transloc 25.6 5.8E+02 0.012 30.9 11.3 28 181-208 470-498 (501)
481 PTZ00186 heat shock 70 kDa pre 25.6 2.4E+02 0.0051 34.9 8.4 40 50-90 579-618 (657)
482 TIGR00763 lon ATP-dependent pr 25.4 3.9E+02 0.0084 33.5 10.2 83 11-106 191-285 (775)
483 TIGR01069 mutS2 MutS2 family p 25.3 2.4E+02 0.0053 35.5 8.5 23 11-33 499-521 (771)
484 PF08429 PLU-1: PLU-1-like pro 25.2 72 0.0016 35.1 3.7 41 164-204 221-261 (335)
485 PF04220 YihI: Der GTPase acti 25.2 1.1E+02 0.0023 32.2 4.6 34 176-209 108-145 (169)
486 PF15456 Uds1: Up-regulated Du 25.1 7E+02 0.015 24.9 10.2 18 46-63 25-42 (124)
487 PF02203 TarH: Tar ligand bind 25.1 6.3E+02 0.014 24.4 10.4 63 12-74 81-145 (171)
488 PRK14011 prefoldin subunit alp 25.0 7.5E+02 0.016 25.2 12.1 91 47-149 4-114 (144)
489 PF03993 DUF349: Domain of Unk 24.9 4.5E+02 0.0098 22.6 9.4 48 41-94 22-69 (77)
490 PF07061 Swi5: Swi5; InterPro 24.9 1.5E+02 0.0033 27.6 5.1 24 42-75 32-55 (83)
491 PF05957 DUF883: Bacterial pro 24.9 2.3E+02 0.005 26.0 6.3 68 133-209 1-72 (94)
492 KOG0240 Kinesin (SMY1 subfamil 24.8 4.2E+02 0.009 32.8 9.8 28 122-149 413-440 (607)
493 cd07614 BAR_Endophilin_A2 The 24.8 9.4E+02 0.02 26.3 12.5 123 13-186 95-217 (223)
494 cd04787 HTH_HMRTR_unk Helix-Tu 24.7 1.3E+02 0.0029 29.3 5.0 22 45-66 88-109 (133)
495 PTZ00400 DnaK-type molecular c 24.6 3.7E+02 0.0081 33.1 9.8 37 49-88 593-629 (663)
496 PF10037 MRP-S27: Mitochondria 24.5 1.1E+03 0.024 28.0 13.1 14 83-96 337-350 (429)
497 cd07602 BAR_RhoGAP_OPHN1-like 24.5 9.2E+02 0.02 26.1 15.4 47 137-184 118-167 (207)
498 PRK01433 hscA chaperone protei 24.4 3.3E+02 0.0071 33.2 9.1 13 7-19 483-495 (595)
499 PF05263 DUF722: Protein of un 24.3 92 0.002 31.2 3.9 26 41-68 56-81 (130)
500 PF07200 Mod_r: Modifier of ru 24.3 2.3E+02 0.005 27.8 6.6 117 39-177 14-144 (150)
No 1
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=3.9e-118 Score=989.95 Aligned_cols=567 Identities=45% Similarity=0.660 Sum_probs=391.3
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Q 002752 2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDAR 81 (885)
Q Consensus 2 aa~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~R 81 (885)
|++||||+|||||||||+|||++||+||+||++++|.|||||||+|||||||||||||||||||++++|||||+.|++||
T Consensus 1 ~~~RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~~L~d~R 80 (575)
T KOG2150|consen 1 MAKRKLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKDSLLDNR 80 (575)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhh
Q 002752 82 KLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRL 161 (885)
Q Consensus 82 K~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~ 161 (885)
||||.+|||||+|||||||||||||||+.++|+||+|++|+|+++||+++|++|++|+|.||+|
T Consensus 81 rlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~---------------- 144 (575)
T KOG2150|consen 81 RLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAE---------------- 144 (575)
T ss_pred HHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999994
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCccccCCCcccccCCCCCCccccccccccC
Q 002752 162 THLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIG 241 (885)
Q Consensus 162 ~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~nqdDf~ef~dde~iYd~L~Lde~~~~~~~~~~~ 241 (885)
+++.+|+||+|||.+||++||+|+|++++|+.|++++|||.||||+|+| +||.++++||++|+|++.+...++++.+
T Consensus 145 -~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqd--pdF~e~e~iYd~l~le~~e~~~~~~~~~ 221 (575)
T KOG2150|consen 145 -ELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQD--PDFLEDETIYDDLNLEELEASMDAVAPG 221 (575)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccC--chhhhhhHHhhccCchhhhhhHhhhcCC
Confidence 7999999999999999999999999999999999999999999999999 2556689999999999999888888765
Q ss_pred CCCCcCCCchhhhhhhhccccCCCCcccccccccCCcccccCccccccCCCCCcccCCCCCCCCCCCCCC-CCCCCCCCC
Q 002752 242 PPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTA-STPAVGPAT 320 (885)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~k~~~~~s~~-~~p~~~~~t 320 (885)
... +.+.+.+ +++++++..+++++....+. .-......+
T Consensus 222 ~~~----------~~~~~~s------------------------------~~~~e~~e~~~~~~~k~~~~~~~~~d~~d~ 261 (575)
T KOG2150|consen 222 SSL----------NNKKMAS------------------------------ETDSEPIESYVEMSNKEPAENVDDADPADS 261 (575)
T ss_pred ccc----------hhhhhhh------------------------------hccccccccccccCCCCccccccccCCCCC
Confidence 411 2222211 11111111111111110000 000000011
Q ss_pred ccccccCccccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcccc-ccccCCCCCC
Q 002752 321 PISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDV-RVMGRGGLSS 399 (885)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~k~~~~~~~p~~~~~p~~~~~-r~~~~~~~~~ 399 (885)
+...++. +...+. +.-|++ .+.+. ++ +
T Consensus 262 ~i~~n~~------------------~~s~~~-------~~tp~~--------------------~~~~~~~~-------t 289 (575)
T KOG2150|consen 262 PIPPNLE------------------SASQQI-------SGTPTA--------------------VVTDVHRE-------T 289 (575)
T ss_pred CCCcCCC------------------Chhhhc-------CCCCcc--------------------cccccccc-------c
Confidence 1111000 000000 000000 00000 00 0
Q ss_pred CCCCCcCCCCCcccCCCCCCCCCCchhhhhhhhccccccccCCCCCcccccccCcccccccccccCCCCCCccCCCCccc
Q 002752 400 QPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGE 479 (885)
Q Consensus 400 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~q~~~s~~~~~~~~~~~~~~~~~~~~~d~s~~~~ 479 (885)
....|+..+ .++.
T Consensus 290 --~~~~~~~~~--~~s~--------------------------------------------------------------- 302 (575)
T KOG2150|consen 290 --HNGPPIGID--ASSS--------------------------------------------------------------- 302 (575)
T ss_pred --cCCCccccC--CCcc---------------------------------------------------------------
Confidence 000000000 0000
Q ss_pred cccccccccCCCCCcccccCCCccCCCCCCCccCccccCchhHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCccchhH
Q 002752 480 TVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLL 559 (885)
Q Consensus 480 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~r~ei~~d~~~~~~q~~qq~qqq~~~~~l~~p~g~~~q~~~~q~~ll 559 (885)
++.+|.+. + .|.+. ++++ .
T Consensus 303 -~A~aaA~~-~-~~~~s------~~~~----------------------------------------------------~ 321 (575)
T KOG2150|consen 303 -AAPSGAVL-A-KGSNG------QHQS----------------------------------------------------P 321 (575)
T ss_pred -ccchhhhc-c-ccccc------CCCc----------------------------------------------------c
Confidence 00000000 0 00000 0000 0
Q ss_pred HhhhccCCccccccccCccccCCCCCcccccccccCCCCCCcCCcccccccCCC-CCccccccccCCCCCCCCCCCCCCC
Q 002752 560 QQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQ-KDADVSHLKVEEPQQPQNLPEESTP 638 (885)
Q Consensus 560 ~q~~sq~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~ 638 (885)
||+++ |.++++|..+.+...... +.+..++.-.-..|-..+.|+++..
T Consensus 322 qq~~~-------------------------------~~s~~~P~~~~p~~~~~~~~~st~~~p~~p~~q~~~~~P~~s~k 370 (575)
T KOG2150|consen 322 QQLRI-------------------------------PLSMPPPHSPTPSLKRIQHKVSTLDGPRTPPEQSEENTPLSSAK 370 (575)
T ss_pred ccccc-------------------------------cCCCCCCCCCCccccchhhccccccCCCCCcccccccChhhhch
Confidence 11111 223333333333332211 1111111100001111223333221
Q ss_pred CccCCCCCCCCccccCcCCCcccccCCCCCCCCcCCccccccCCCCCCCC----CCCCCCCCCCccccccccCCCCcccc
Q 002752 639 ESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQ----PLQSSQPSGGLGVIGRRSVSDLGAIG 714 (885)
Q Consensus 639 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~~~~q~~rd~~l~~~q----~~~s~~~~glLGVi~r~sdpDL~AlG 714 (885)
+.+..+.+.+..+++..-..+++.+++.. +.+++..+--+++..+|....||++
T Consensus 371 ---------------------~~~~~s~~~~~~vp~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~- 428 (575)
T KOG2150|consen 371 ---------------------LQASKSESPPKGVPELEEEAAASTLSPDSSEPASANTPLSSKEQHSPFELGLSPLGVQ- 428 (575)
T ss_pred ---------------------hccCcccCCCCCCCccccccccCCCCCCccccccccCCCCccccccchhhcccccccc-
Confidence 11111334444444444444444444332 2222222211222222222255543
Q ss_pred CCCCCccccCCCcccccccccchHHhhhhCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhcccCCCCCcc
Q 002752 715 DSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 794 (885)
Q Consensus 715 ~DLT~~~~tLG~~~~~~LNLns~E~Ly~tF~sPwdsep~r~y~P~~p~~~P~cY~~~p~P~L~np~~f~K~Ki~kfs~ET 794 (885)
.++++++..++-+.|..|...+.|.+++.++.|.|++|+.+|+.|++++++..+...+|+| |+.||
T Consensus 429 ---------~~~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r-----l~~dT 494 (575)
T KOG2150|consen 429 ---------SEITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER-----LDPDT 494 (575)
T ss_pred ---------ccccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh-----ccccc
Confidence 1256899999999999999999999999999999999999999999999999999999999 99999
Q ss_pred eEEEeecCCChHHHHHHHHHHhhcccccccccceeeeccCCCcccCCCcceEEEEEEcCccCccccccccccccccceEE
Q 002752 795 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTF 874 (885)
Q Consensus 795 LFYIFYs~PgD~~QllAA~EL~~RgWRYHKk~~~WftR~~eP~v~t~~yErG~Y~yFDp~~~~~~~~~~W~qk~K~eFtf 874 (885)
||||||+++|++.|++||+||++|+||||++|.+||+|+.||+.+|+.||+|.|+|||+ ..||+|+|.+|+|
T Consensus 495 LFfiFY~~qgt~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~--------~~W~qrkK~dFtf 566 (575)
T KOG2150|consen 495 LFFIFYYQQGTYEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDY--------KDWSQRKKIDFTF 566 (575)
T ss_pred eeeEEeeecchHHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEeh--------hHhhhhhccceee
Confidence 99999999999999999999999999999999999999999999999999999999999 4899999999999
Q ss_pred eccchhhh
Q 002752 875 EYNYLEDE 882 (885)
Q Consensus 875 eY~~LE~r 882 (885)
+|.|||+.
T Consensus 567 eY~yLE~~ 574 (575)
T KOG2150|consen 567 EYQYLEDS 574 (575)
T ss_pred ehhhccCC
Confidence 99999975
No 2
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=4.1e-95 Score=773.27 Aligned_cols=199 Identities=45% Similarity=0.725 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHH
Q 002752 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERF 91 (885)
Q Consensus 12 Dr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErF 91 (885)
+++||+|.|||+.||+||+|+++++|.+||||||+|||+|||||||+|||||||++++|||||..|+++|||||..||||
T Consensus 1 ~~~~~~~~e~i~~fd~iyek~~~s~~~s~~ekle~dlk~~ikklq~~rdqiktw~s~~dikdk~~l~~nrrlie~~me~f 80 (548)
T COG5665 1 DKLLKKVKEGIEDFDDIYEKFQSTDNSSHREKLESDLKREIKKLQKHRDQIKTWLSKEDVKDKQVLMTNRRLIENGMERF 80 (548)
T ss_pred ChhHHHHHhhhhhHHHHHHHHhccCchhHHHHHhhHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHhHHHHHhHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHH
Q 002752 92 KICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 171 (885)
Q Consensus 92 K~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRh 171 (885)
|+|||+||||+||||||..+.++||+|++|++...||.+|+++|++|.|.+||| +++..++||
T Consensus 81 k~ve~~mk~k~fske~ls~~~~~dpke~~k~d~i~~i~~~~~el~~q~e~~ea~-----------------e~e~~~erh 143 (548)
T COG5665 81 KSVEKLMKTKQFSKEALTNPDIIDPKELKKRDQVLFIHDCLDELQKQLEQYEAQ-----------------ENEEQTERH 143 (548)
T ss_pred HHHHHHHHHHHhhHhhccCcccCChhHhccccceehHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 789999999
Q ss_pred HHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCccccCCCcccccCCCCCC
Q 002752 172 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDK 230 (885)
Q Consensus 172 k~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~nqdDf~ef~dde~iYd~L~Lde 230 (885)
+|||.+||+|||.|+|.+++||-|++|+|||.||||+|++ +||.|+|+|||+|| +|
T Consensus 144 ~~h~~~le~i~~~l~n~~~~pe~v~~~q~di~yyve~~~~--~df~e~~~~y~~~~-~e 199 (548)
T COG5665 144 EFHIANLENILKKLQNNEMDPEPVEEFQDDIKYYVENNDD--PDFIEYDTIYEDMG-CE 199 (548)
T ss_pred HHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHhhcCCC--cchhhhhhHHHhhc-cc
Confidence 9999999999999999999999999999999999999998 24455899999999 44
No 3
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=5.2e-88 Score=693.86 Aligned_cols=227 Identities=63% Similarity=0.917 Sum_probs=216.9
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Q 002752 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARK 82 (885)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK 82 (885)
++||||+|||||||||+|||+.||+||+||++++|+|||||||+|||||||||||||||||+|++++|||||++|+|+||
T Consensus 2 ~~RKLQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~Rk 81 (233)
T PF04065_consen 2 AKRKLQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRK 81 (233)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCC-----CC
Q 002752 83 LIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGK-----TR 157 (885)
Q Consensus 83 ~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K-----~~ 157 (885)
+||++|||||+|||+|||||||||||++++++||++++|.|+++||+++|++|++|||.||+|+|+|+.+++| ..
T Consensus 82 ~IE~~MErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~ 161 (233)
T PF04065_consen 82 LIEEQMERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTK 161 (233)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999753222 34
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCccccCCCcccccCCCCCCc
Q 002752 158 PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKV 231 (885)
Q Consensus 158 ~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~nqdDf~ef~dde~iYd~L~Lde~ 231 (885)
++|+++|+.+|+||+|||.+||+|||+|+||.|+|++|++|||||+|||++|+++ ||++|++|||+|+||++
T Consensus 162 ~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~V~~ikedieyYve~n~d~--Df~ede~iYddl~Ldee 233 (233)
T PF04065_consen 162 QERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQVEDIKEDIEYYVESNQDP--DFEEDEDIYDDLNLDEE 233 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCCC--cccchHhHhhccCCCCC
Confidence 6899999999999999999999999999999999999999999999999999983 56678999999999974
No 4
>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1e-36 Score=291.18 Aligned_cols=126 Identities=43% Similarity=0.882 Sum_probs=107.4
Q ss_pred hhhhCCCCCCCCccCCCCCCCCCCCCCCCC-------CCCCCC-CCChhhhhhcccCCCCCcceEEEeecCCChHHHHHH
Q 002752 740 AFYKLPQPKDSERARSYIPRHPAVTPPSYP-------QVQAPI-VSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLA 811 (885)
Q Consensus 740 Ly~tF~sPwdsep~r~y~P~~p~~~P~cY~-------~~p~P~-L~np~~f~K~Ki~kfs~ETLFYIFYs~PgD~~QllA 811 (885)
||.+|++||++.+++...+ .+.+|.||. +.+++. +.++.+|+| |++||||||||+||||++|++|
T Consensus 1 L~~sf~sp~~~~~~~~~~~--~y~~P~~~~~~~~~~p~~p~~~~~~~~~~~~k-----~~~eTLFyiFY~~p~~~~Q~~A 73 (134)
T PF04153_consen 1 LYSSFASPPSDSDSRQQEP--QYQIPSCYLPTPSSYPQRPPPIILDSPEKFQK-----FSEETLFYIFYYMPGDYQQLLA 73 (134)
T ss_pred CccccCCCCCCCCCCCCCC--CCCCCCCcCcCccccCCCcCcccccchHHHhh-----cCCceEEEEEeecCCcHHHHHH
Confidence 6889999999987643211 244566665 444444 455656666 9999999999999999999999
Q ss_pred HHHHhhcccccccccceeeeccCCCcccCCCcceEEEEEEcCccCccccccccccccccceEEeccchh
Q 002752 812 AKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE 880 (885)
Q Consensus 812 A~EL~~RgWRYHKk~~~WftR~~eP~v~t~~yErG~Y~yFDp~~~~~~~~~~W~qk~K~eFtfeY~~LE 880 (885)
|+||++|||||||++++||+|+++|.++++.+|+|+|+|||++ +|+++.|+||+|+|++||
T Consensus 74 A~eL~~R~Wryhk~~~~W~~r~~~~~~~~~~~e~g~y~~FD~~--------~W~~~~k~~f~~~y~~LE 134 (134)
T PF04153_consen 74 AKELYKRGWRYHKEYKTWFQRDSEPKPITEQYERGSYVYFDPE--------SWEKRRKKNFTFDYSDLE 134 (134)
T ss_pred HHHHHHCCcEEecCcCEEeeECCCCCccccceeeeeEEEechH--------HhcCcchhccEEeHHHcC
Confidence 9999999999999999999999999999999999999999994 799888899999999998
No 5
>COG5601 CDC36 General negative regulator of transcription subunit [Transcription]
Probab=99.98 E-value=6.6e-34 Score=273.89 Aligned_cols=163 Identities=23% Similarity=0.449 Sum_probs=132.7
Q ss_pred ccccccccCCCCc--cccCCCCCccccCCCcccccccccchHHhhhhCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 002752 699 LGVIGRRSVSDLG--AIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIV 776 (885)
Q Consensus 699 LGVi~r~sdpDL~--AlG~DLT~~~~tLG~~~~~~LNLns~E~Ly~tF~sPwdsep~r~y~P~~p~~~P~cY~~~p~P~L 776 (885)
+-++ |+.|..+. .||-||. ++| .+++---...+.+..+|.+||+...-++..| -+.+|.||+..|+|+.
T Consensus 6 ~pl~-~ied~e~s~~~lg~Dl~----s~~--~sl~~p~~~qDr~~~t~~sPwae~tkk~vqp--~f~lP~cy~n~p~pp~ 76 (172)
T COG5601 6 KPLE-QIEDEEQSIHDLGKDLL----SEI--LSLVRPKKYQDRPSTTLYSPWAESTKKPVQP--MFMLPNCYPNAPNPPI 76 (172)
T ss_pred hhHH-HHHHhhhhHHHhchhHH----HHH--HhhcCcccccccccccccChhhhhccCcccc--hhcCccccCCCCCCCc
Confidence 3444 77777777 7888988 655 1111222445567788999999985444334 2679999999997765
Q ss_pred CChhhhhhcccCCCCCcceEEEeecCCChHHHHHHHHHHhhcccccccccceeeeccC--CCcccCCCcceEEEEEEcCc
Q 002752 777 SNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFH 854 (885)
Q Consensus 777 ~np~~f~K~Ki~kfs~ETLFYIFYs~PgD~~QllAA~EL~~RgWRYHKk~~~WftR~~--eP~v~t~~yErG~Y~yFDp~ 854 (885)
.+.. .+.+||..|++||||||||+||+|++|..|+.||.+|+|||||.+++|++.++ +|.+.++..|||+|++|||.
T Consensus 77 f~~~-~~~~k~~~f~dETLFyiFY~~P~dvlQe~ay~el~krnwrfhK~lk~wlT~~p~m~P~~~~~~~ergsyvfFDP~ 155 (172)
T COG5601 77 FKVN-IEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLTFNPGMSPATADHVKERGSYVFFDPF 155 (172)
T ss_pred eecc-hHHHHHHhhccceeEEEEeeCCcHHHHHHHHHHHHHhchhhhhhheeeeccCCCCCccccccccccceEEEEcch
Confidence 5554 56689999999999999999999999999999999999999999999999985 78888999999999999994
Q ss_pred cCccccccccccccccceEEeccchh
Q 002752 855 IANDDLQHGWCQRIKTEFTFEYNYLE 880 (885)
Q Consensus 855 ~~~~~~~~~W~qk~K~eFtfeY~~LE 880 (885)
.| .|++.||.|+|+.++
T Consensus 156 --------~W-~k~~~dfll~y~av~ 172 (172)
T COG5601 156 --------SW-SKVSLDFLLDYKAVR 172 (172)
T ss_pred --------hH-HHHhHHHHHHHHhhC
Confidence 89 499999999998764
No 6
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.56 E-value=1.4e-15 Score=162.83 Aligned_cols=97 Identities=24% Similarity=0.351 Sum_probs=82.0
Q ss_pred cccCCC--Cc-cccCCCCCccccCCCcccccccccchHHhhhhCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChh
Q 002752 704 RRSVSD--LG-AIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPA 780 (885)
Q Consensus 704 r~sdpD--L~-AlG~DLT~~~~tLG~~~~~~LNLns~E~Ly~tF~sPwdsep~r~y~P~~p~~~P~cY~~~p~P~L~np~ 780 (885)
|..+.| .. .+|.||+ ++| |+|+..+.++.+|.+||...|++.. ..+.+|.||+.++++. ..
T Consensus 213 r~~~~~g~~~l~lg~Dl~----~ll------lsla~~~di~~~F~~P~~~~P~~~~---~~~~lp~~y~~v~~~~-~~-- 276 (312)
T KOG2151|consen 213 RGAQGEGQTTLPLGADLN----SLL------LSLAVPEDIIPTFQGPWGEVPTSQE---ASFNLPNCYLNVNPKL-QF-- 276 (312)
T ss_pred eecccCcceeeccCCChh----hhh------ccccccccccccccCCcccCCcccc---hhhhcchhhhccCCcc-ch--
Confidence 666665 22 8999999 888 9999999999999999999999932 2467999999854433 21
Q ss_pred hhhhcccCCCCCcceEEEeecCCChHHHHHHHHHHhhccc
Q 002752 781 FWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 820 (885)
Q Consensus 781 ~f~K~Ki~kfs~ETLFYIFYs~PgD~~QllAA~EL~~RgW 820 (885)
.+|..|++||||||||.+|+|++|+.||.||.+|+|
T Consensus 277 ----~~~~~~~dE~lff~fyt~~~d~~Q~~aa~el~~r~w 312 (312)
T KOG2151|consen 277 ----SKIDQFQDETLFYIFYTFPGDVMQELAAAELLKRNW 312 (312)
T ss_pred ----HHHhhhcccceeeeeccCCcchhhhhHHHHhhccCC
Confidence 247779999999999999999999999999999999
No 7
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.37 E-value=3.9e-13 Score=144.25 Aligned_cols=133 Identities=28% Similarity=0.561 Sum_probs=109.4
Q ss_pred cccCCCCCccccCCCcccccccccc-hHHhhhhCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhhhhh---ccc
Q 002752 712 AIGDSLSGATVSSGGMHDQMYNMQM-LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER---LSL 787 (885)
Q Consensus 712 AlG~DLT~~~~tLG~~~~~~LNLns-~E~Ly~tF~sPwdsep~r~y~P~~p~~~P~cY~~~p~P~L~np~~f~K---~Ki 787 (885)
++|.||+ +|| +|+|. .-.+|.+|++||++++.+.- .+..+|.||...+. .+.+ ..+
T Consensus 37 ~~~~d~~----~lg------~~~n~~~~~~~~~f~g~~~s~~l~~l---~~~~~P~~~~~~~~-------~~~~~~~~~~ 96 (312)
T KOG2151|consen 37 ALGYDLT----TLG------LNLNLSERKLLMNFAGPWASEPLRHL---LDTKVPEEYMTHRH-------LRSKLPSLRL 96 (312)
T ss_pred eeccchh----ccC------cccccccccccccccCcCCCcccccc---ccccCccccccchh-------hhhcCCcccc
Confidence 7899999 898 45543 33799999999999999843 34679999994432 2222 347
Q ss_pred CCCCCcceEEEeecCCChHHHHHHHHHHhhcccccccccceeeeccC--CCcccCCCcceEEEEEEcCccCccccccccc
Q 002752 788 DSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWC 865 (885)
Q Consensus 788 ~kfs~ETLFYIFYs~PgD~~QllAA~EL~~RgWRYHKk~~~WftR~~--eP~v~t~~yErG~Y~yFDp~~~~~~~~~~W~ 865 (885)
+++....|||+||++| |.||+.|.||||++.+.|+++.. .+...++.|+.|.|..||. ..|+
T Consensus 97 ~kv~~~~l~~~~~~~P--------a~e~~~r~~~~~~~~~~~l~~s~yg~~~~~~~~~~~g~~~~~~q--------~s~~ 160 (312)
T KOG2151|consen 97 NKVGERVLFYLFYNLP--------AGELQAREWRFHKSEQVWLTRSQYGGVKELPGNYMKGHFNVFDQ--------MSWR 160 (312)
T ss_pred cccccccceeeeccCC--------CcccccccccccccccccccccccCCccccccchhhchhccccc--------hhhh
Confidence 7799999999999999 99999999999999999999974 5666678999999999999 4895
Q ss_pred cccccceEEeccchhh
Q 002752 866 QRIKTEFTFEYNYLED 881 (885)
Q Consensus 866 qk~K~eFtfeY~~LE~ 881 (885)
.+-.+-.++|..+|.
T Consensus 161 -~~~ke~~l~~~~~~~ 175 (312)
T KOG2151|consen 161 -KIPKELKLAYSDLED 175 (312)
T ss_pred -hcccchhhccccccc
Confidence 778889999998886
No 8
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.38 E-value=0.93 Score=52.34 Aligned_cols=135 Identities=15% Similarity=0.295 Sum_probs=65.5
Q ss_pred cchhhhHHHHHHHHHH---HHHHHHHHHHHhhcCCCh------hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh--
Q 002752 5 RKLQGEIDRVLKKVQE---GVDVFDSIWNKVYDTDNA------NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD-- 73 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~E---Gve~Fd~iyeK~~~a~n~------nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKD-- 73 (885)
|+++++|+++..++.+ .++.|+...+.+...... ++.+++....+.-..++.+++++|..+-. ++.+
T Consensus 177 ~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~--~i~~~~ 254 (562)
T PHA02562 177 RELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM--DIEDPS 254 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccHH
Confidence 4555566555544444 455555444444332221 12222333333333334455555555542 3333
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCC--CCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 74 --KKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ--PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 74 --K~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~--~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
-..|.+.+..++..++.++..-+-.| +.+-... ..++.. .....-|.+-|.+|+.|++.++..+..+
T Consensus 255 ~~L~~l~~~~~~~~~~l~~~~~~~~~~~-----~~~~Cp~C~~~~~~~----~~~~~~l~d~i~~l~~~l~~l~~~i~~~ 325 (562)
T PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIKMYE-----KGGVCPTCTQQISEG----PDRITKIKDKLKELQHSLEKLDTAIDEL 325 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCCCCcCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12577777778888877765544443 1111100 111111 3344446667777777777777777655
Q ss_pred c
Q 002752 150 T 150 (885)
Q Consensus 150 ~ 150 (885)
.
T Consensus 326 ~ 326 (562)
T PHA02562 326 E 326 (562)
T ss_pred H
Confidence 3
No 9
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.36 E-value=0.18 Score=53.95 Aligned_cols=166 Identities=20% Similarity=0.281 Sum_probs=80.8
Q ss_pred HHHHHHHHhhcCCC--hhhHHHHHHHHHHHHHHHHHHH-HHHHhhhcccc-c-hhh----------HHHHHHHHHHHHHH
Q 002752 24 VFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYR-DQIKTWIQSSE-I-KDK----------KALVDARKLIEREM 88 (885)
Q Consensus 24 ~Fd~iyeK~~~a~n--~nQKEKlE~DLKKEIKKLQR~R-DQIKtW~~s~d-I-KDK----------~~L~e~RK~IE~~M 88 (885)
.|...|+.+....- ++....|-.-|..+++.++++| +|+|.|-..-+ + ..+ ..|..+|+.-|.
T Consensus 57 tl~~~w~~~~~~~E~~a~~H~~l~~~L~~~~~~i~~~~~~~~k~~kk~~e~~~~~~~~~q~~q~~~~~l~kaK~~Y~~-- 134 (261)
T cd07674 57 TFAPMWEVFRVSSDKLALCHLELMRKLNDLIKDINRYGDEQVKIHKKTKEEAIGTLEAVQSLQVQSQHLQKSRENYHS-- 134 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 47777777654331 2234444444555555566555 69999988522 1 111 123333444433
Q ss_pred HHHHHHHhhhccccccccccCCCCCCCchHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHH
Q 002752 89 ERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE-----TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTH 163 (885)
Q Consensus 89 ErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E-----~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~ 163 (885)
++|+.|+..+ .|+ .+++.+|.. +.+=...+++.++.-...|+.++...-.+=-.-...||..
T Consensus 135 -~cke~e~a~~------~~~------s~k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~ 201 (261)
T cd07674 135 -KCVEQERLRR------EGV------PQKELEKAELKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRH 201 (261)
T ss_pred -HHHHHHHHHh------cCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444432 232 233222221 2333555566665555555544432200000012357788
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCC
Q 002752 164 LETSITRHKAHIMK--------LELILRLLDNDELSPEQVNDVKDLLEDYVERNQDD 212 (885)
Q Consensus 164 le~~ieRhk~Hi~k--------LE~lLRlL~N~~ldpe~V~~IKddIeyYVE~nqdD 212 (885)
|...+-.+-.|+.. .|.|.+.|+ .| ++.+||..||+.+...
T Consensus 202 lk~~L~~~~~~~~~~~~~~~~~~e~~~~~l~-------~i-d~~~Di~~fv~~~~tG 250 (261)
T cd07674 202 MKLLIKGYSHSVEDTHVQIGQVHEEFKQNVE-------NV-GVENLIRKFAESKGTG 250 (261)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHH-------hC-CHHHHHHHHHHhCCCC
Confidence 88877777555422 233333332 22 2668899999988763
No 10
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.33 E-value=4.4 Score=44.92 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHH
Q 002752 159 PRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 206 (885)
Q Consensus 159 ~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYV 206 (885)
.+++++...+..++--|..+|.++. .+...+..+|..||+.++..=
T Consensus 244 ~~i~~~~~~k~~l~~eI~e~~~~~~--~~r~~t~~Ev~~Lk~~~~~Le 289 (325)
T PF08317_consen 244 EKIEELEEQKQELLAEIAEAEKIRE--ECRGWTRSEVKRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHH
Confidence 4566777777777777888887776 566779999999999998653
No 11
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.83 E-value=1.5 Score=55.77 Aligned_cols=146 Identities=24% Similarity=0.257 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHHHHHHH-HhhhccccccccccCCCCCC
Q 002752 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQS--SEIKDKKALVDARKLIEREMERFKIC-EKETKTKAFSKEGLGQQPKT 114 (885)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s--~dIKDK~~L~e~RK~IE~~MErFK~v-EKe~KtKafSkEGL~~~~k~ 114 (885)
.++++|+++++|.++--++-+--||+..=.. ..+-|++.|.+.++.||.-=-.+-++ |+..| |+= .++|- .++
T Consensus 819 ~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~-i~~lq--~~i 894 (1293)
T KOG0996|consen 819 ENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KAR-IKELQ--NKI 894 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHH-HHHHH--HHH
Confidence 5679999999999999888888888877555 22336777877777776543333333 44444 221 11111 111
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 002752 115 DPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS 191 (885)
Q Consensus 115 DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ld 191 (885)
|- -..+-..--++-|+.++.|++.++++|.++.++.. +....++.++..+.+|..-|..+|.=+..|.-+..+
T Consensus 895 ~~---i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~-~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~ 967 (1293)
T KOG0996|consen 895 DE---IGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIK-TSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKG 967 (1293)
T ss_pred HH---hhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHh-cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 11112222356789999999999999998865433 233467778888888888888887755555544443
No 12
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.34 E-value=1.4 Score=56.64 Aligned_cols=129 Identities=22% Similarity=0.320 Sum_probs=70.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccch----hhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Q 002752 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK----DKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 113 (885)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIK----DK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k 113 (885)
.++.+-+...++..-.++..-.++++.|+.+ +++ |...|.++|+.|+.-.++-+.||..
T Consensus 731 d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~-eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~---------------- 793 (1201)
T PF12128_consen 731 DEQIEQIKQEIAAAKQEAKEQLKELEQQYNQ-ELAGKGVDPERIQQLKQEIEQLEKELKRIEER---------------- 793 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence 3445555555555555666666677777764 444 4446777777777666665555432
Q ss_pred CCchHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHhhhhccccC---CCCchhhHHHHHHHHHHHHHHHHHHH
Q 002752 114 TDPKEKAKSETRDWLNNL----------VSELESQIDSFEAELEGLTVKKG---KTRPPRLTHLETSITRHKAHIMKLEL 180 (885)
Q Consensus 114 ~DP~ekeK~E~~~wL~~~----------IdeL~~QiE~~EaEiE~L~~KK~---K~~~~r~~~le~~ieRhk~Hi~kLE~ 180 (885)
...-.+-.+|+... ..+|..|+..++.+++.+..+.. +.-..++.+++..+...+-++.+|+.
T Consensus 794 ----r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~ 869 (1201)
T PF12128_consen 794 ----RAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEE 869 (1201)
T ss_pred ----HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223455566554 33455555666655555532211 11123555666666666666666666
Q ss_pred HHHhhhC
Q 002752 181 ILRLLDN 187 (885)
Q Consensus 181 lLRlL~N 187 (885)
.++.|.+
T Consensus 870 ~l~~l~~ 876 (1201)
T PF12128_consen 870 QLRRLRD 876 (1201)
T ss_pred HHHHHHH
Confidence 6664433
No 13
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.95 E-value=1.4 Score=52.73 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN 37 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n 37 (885)
-|.|||-+.|+-.+|...|=+||+++.++..
T Consensus 71 yQ~EiD~LtkRsk~aE~afl~vye~L~eaPD 101 (629)
T KOG0963|consen 71 YQSEIDNLTKRSKFAEAAFLDVYEKLIEAPD 101 (629)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhCCC
Confidence 3889999999999999999999999998765
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.66 E-value=2.7 Score=52.14 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002752 45 EADLKKEIKKLQRYRDQ 61 (885)
Q Consensus 45 E~DLKKEIKKLQR~RDQ 61 (885)
-.+|++++++|+|+++.
T Consensus 193 ~~~L~~q~~~l~~~~e~ 209 (1164)
T TIGR02169 193 IDEKRQQLERLRREREK 209 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36788888888888883
No 15
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.63 E-value=1.7 Score=54.76 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccc--cCC-C---CchhhHHHHHHHHHHHHHHHHHH
Q 002752 117 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK--KGK-T---RPPRLTHLETSITRHKAHIMKLE 179 (885)
Q Consensus 117 ~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~K--K~K-~---~~~r~~~le~~ieRhk~Hi~kLE 179 (885)
+-.+.+.-..||+.-|+.|+.|+..+..|++.+..+ ... . -..++..|...|+...|||..|.
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677899999999999999999888887432 111 1 12356667777777777777654
No 16
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.62 E-value=8.2 Score=46.47 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002752 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (885)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~ 69 (885)
..+|+.+|.+++..-+++.+.+++++.|+++.
T Consensus 261 ~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~ 292 (650)
T TIGR03185 261 FEEREQLERQLKEIEAARKANRAQLRELAADP 292 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55688999999999999999999999998663
No 17
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.52 E-value=7.6 Score=49.16 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhHHHHhhhhc----cccCC--CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-----------hh
Q 002752 131 LVSELESQIDSFEAELEGLT----VKKGK--TRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-----------PE 193 (885)
Q Consensus 131 ~IdeL~~QiE~~EaEiE~L~----~KK~K--~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ld-----------pe 193 (885)
.+.++...+++....+|.+. .++++ +...+-......++-.+-||.+|+.-|+.|..+.=- -+
T Consensus 407 ~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~ 486 (1174)
T KOG0933|consen 407 TLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHE 486 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 33344444444444444442 12332 223444555667788889999999999988765431 23
Q ss_pred hhhhhhhHHHHHHHhCC
Q 002752 194 QVNDVKDLLEDYVERNQ 210 (885)
Q Consensus 194 ~V~~IKddIeyYVE~nq 210 (885)
.+..++|.+++......
T Consensus 487 ~~~~lk~~~~~l~a~~~ 503 (1174)
T KOG0933|consen 487 DIGRLKDELDRLLARLA 503 (1174)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 34446666666555443
No 18
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.88 E-value=7.2 Score=46.42 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhCCCCChhhhh----hhhhHHHHHHH
Q 002752 172 KAHIMKLELILRLLDNDELSPEQVN----DVKDLLEDYVE 207 (885)
Q Consensus 172 k~Hi~kLE~lLRlL~N~~ldpe~V~----~IKddIeyYVE 207 (885)
.-.-.+++.|.+.|+.|.|+.+.|+ ++.++++++.+
T Consensus 451 ~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~ 490 (569)
T PRK04778 451 FEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEE 490 (569)
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777888888999988777 46666665543
No 19
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=91.71 E-value=1.5 Score=46.62 Aligned_cols=84 Identities=12% Similarity=0.176 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhhhhhhhHHHHH
Q 002752 127 WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLEDY 205 (885)
Q Consensus 127 wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ld-pe~V~~IKddIeyY 205 (885)
=....|+.++.--..++.++...-.+=-.-...||..++..+-.+--|+...=..+.-+-++-.. .+.| ++..||..|
T Consensus 165 ~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~~i-d~~~Di~~f 243 (261)
T cd07648 165 EYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENHSAVGQVHEEFKRQVDEL-TVDKLLRQF 243 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC-CHHHHHHHH
Confidence 34455555555444455554332100000123467777776666666654322211111111110 1111 256789999
Q ss_pred HHhCCC
Q 002752 206 VERNQD 211 (885)
Q Consensus 206 VE~nqd 211 (885)
|+.+..
T Consensus 244 v~~~gt 249 (261)
T cd07648 244 VESKGT 249 (261)
T ss_pred HHcCCC
Confidence 998865
No 20
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.65 E-value=11 Score=49.82 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhC
Q 002752 159 PRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERN 209 (885)
Q Consensus 159 ~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~n 209 (885)
..+..++..+..|+--+.+||.+=.++....|+.+++.+..+..+.-++..
T Consensus 404 qel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~ 454 (1486)
T PRK04863 404 QALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEA 454 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456777788888899999999999999889999998877766666666543
No 21
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.64 E-value=29 Score=40.94 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=18.1
Q ss_pred cchhhhHHHHHHHHHHHH--------HHHHHHHHHhh
Q 002752 5 RKLQGEIDRVLKKVQEGV--------DVFDSIWNKVY 33 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGv--------e~Fd~iyeK~~ 33 (885)
.-+|..|-|.=-||...+ +.||+.+.+|.
T Consensus 4 k~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~ 40 (460)
T KOG3771|consen 4 KGVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNFN 40 (460)
T ss_pred hhhHHHhccccHHHHhhcCCcccccchHHHHHHHHHH
Confidence 456666666666665555 56777766663
No 22
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=91.48 E-value=2.3 Score=47.35 Aligned_cols=112 Identities=22% Similarity=0.330 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHH
Q 002752 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120 (885)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~eke 120 (885)
.-|+..-|.|-+|.|||+= ..|..||-.|+++|+- = .+.
T Consensus 148 ~KKlg~nIEKSvKDLqRct---------------vSL~RYr~~lkee~d~---S-----------------------~k~ 186 (302)
T PF07139_consen 148 NKKLGPNIEKSVKDLQRCT---------------VSLTRYRVVLKEEMDS---S-----------------------IKK 186 (302)
T ss_pred ccccCccHHHHHHHHHHHH---------------HHHHhhhhHHHHHHHH---H-----------------------HHH
Confidence 4577788999999999983 3799999999999965 1 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCChhhhhhhh
Q 002752 121 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN-DELSPEQVNDVK 199 (885)
Q Consensus 121 K~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N-~~ldpe~V~~IK 199 (885)
-..+.+=|..||-+ .--.|=+|+++. -++.++-...+..+-|.|=|+-+- ..+..++|-+|+
T Consensus 187 ik~~F~~l~~cL~d---REvaLl~EmdkV--------------K~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELR 249 (302)
T PF07139_consen 187 IKQTFAELQSCLMD---REVALLAEMDKV--------------KAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELR 249 (302)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 11122223333321 112333444433 112344444555566666665553 347899999999
Q ss_pred hHHHHHHHhCC
Q 002752 200 DLLEDYVERNQ 210 (885)
Q Consensus 200 ddIeyYVE~nq 210 (885)
-||.+||-.-.
T Consensus 250 adIK~fvs~rk 260 (302)
T PF07139_consen 250 ADIKHFVSERK 260 (302)
T ss_pred HHHHHHhhhhh
Confidence 99999996443
No 23
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=91.37 E-value=0.78 Score=44.73 Aligned_cols=87 Identities=23% Similarity=0.382 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhcc------ccCCCCc-----hhhHHHHHHHHHHHHHHHHHHHHH----------
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGLTV------KKGKTRP-----PRLTHLETSITRHKAHIMKLELIL---------- 182 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L~~------KK~K~~~-----~r~~~le~~ieRhk~Hi~kLE~lL---------- 182 (885)
+.-=|+.+++.|++++..+|.+++.+.. |+|++.. .++..++..+++......+||.++
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~ 81 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQ 81 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445788899999999999999988742 3343221 133445555555555555555443
Q ss_pred -------------HhhhCCCCChhhhhhhhhHHHHHHHhCCC
Q 002752 183 -------------RLLDNDELSPEQVNDVKDLLEDYVERNQD 211 (885)
Q Consensus 183 -------------RlL~N~~ldpe~V~~IKddIeyYVE~nqd 211 (885)
+.+ |..+++++|+++.|+|+.-++..++
T Consensus 82 ~v~~al~~~~~~Lk~~-~~~i~~~~v~~~~d~~~e~~e~~~e 122 (171)
T PF03357_consen 82 QVVKALKQSSKALKKI-NKQINLDKVEKLMDDFQEEMEDQDE 122 (171)
T ss_dssp HHSSS----SHHHHHH-HHSTTSCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333 5568999999999999999987654
No 24
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.36 E-value=10 Score=44.22 Aligned_cols=94 Identities=28% Similarity=0.282 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--ccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccc
Q 002752 76 ALVDARKLIEREMERFKICEKETKT--KAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK 153 (885)
Q Consensus 76 ~L~e~RK~IE~~MErFK~vEKe~Kt--KafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK 153 (885)
-|.+.++..++..+.|+.||+|.+. |--|..|. +-.+.|+..-+..-|-+|+.|++..+.|++.+
T Consensus 266 ~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~---------e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~l---- 332 (446)
T KOG4438|consen 266 ELQEKAKILEEKVTNLQTIEKELKALLKKISSDGV---------EYDSLETKVVELKEILELEDQIELNQLELEKL---- 332 (446)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhh---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 6778889999999999999999763 22233332 33556777777889999999999999998776
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 002752 154 GKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL 190 (885)
Q Consensus 154 ~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~l 190 (885)
--.+.+..|..-|+...|...+-++|...
T Consensus 333 --------k~~e~~~kqL~~~~kek~~~~Qd~~~r~~ 361 (446)
T KOG4438|consen 333 --------KMFENLTKQLNELKKEKESRRQDLENRKT 361 (446)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 12455667777777666666666666554
No 25
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.28 E-value=4.5 Score=43.65 Aligned_cols=101 Identities=31% Similarity=0.316 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccC
Q 002752 76 ALVDARKLIEREMERFK-ICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG 154 (885)
Q Consensus 76 ~L~e~RK~IE~~MErFK-~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~ 154 (885)
.|.+.|.--|..+.++| .+|...+.|- +.|.. ......+...-++.-|.+++.++..++.++++|..++.
T Consensus 170 ~L~eiR~~ye~~~~~~~~e~e~~y~~k~---~~l~~------~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~ 240 (312)
T PF00038_consen 170 ALREIRAQYEEIAQKNREELEEWYQSKL---EELRQ------QSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNA 240 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhccccc---ccccc------cccccccccchhHhHHHHHHhhhhHhhhhhhccccchh
Confidence 56666666676666666 4454444431 11110 11122334445555666666666666666666633221
Q ss_pred CCCchhhHHHHHHH----HHHHHHHHHHHHHHHhhh
Q 002752 155 KTRPPRLTHLETSI----TRHKAHIMKLELILRLLD 186 (885)
Q Consensus 155 K~~~~r~~~le~~i----eRhk~Hi~kLE~lLRlL~ 186 (885)
. =..++.+++... +.|.-+|..||.-|.-|.
T Consensus 241 ~-Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~ 275 (312)
T PF00038_consen 241 S-LERQLRELEQRLDEEREEYQAEIAELEEELAELR 275 (312)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-hhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 1 012333333222 334555555555444433
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.80 E-value=9.4 Score=42.40 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHH
Q 002752 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERF 91 (885)
Q Consensus 12 Dr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErF 91 (885)
+.-.+.+.+.++..+.++.++ .+.-+.|++||..|+..-+. -+.-|+..|...|..|...++..
T Consensus 162 ~~D~~~L~~~~~~l~~~~~~l---------~~~~~~L~~e~~~Lk~~~~e-------~~~~D~~eL~~lr~eL~~~~~~i 225 (325)
T PF08317_consen 162 QEDYAKLDKQLEQLDELLPKL---------RERKAELEEELENLKQLVEE-------IESCDQEELEALRQELAEQKEEI 225 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhh-------hhhcCHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666655 23456677777777765554 45568888888888888777664
Q ss_pred HHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 002752 92 KICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 92 K~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
....+ .-.+..+-..++...|++++.++..++++|+.+.
T Consensus 226 ~~~k~--------------------~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 226 EAKKK--------------------ELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32221 1223344566778888999999999999988875
No 27
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.68 E-value=5.6 Score=48.97 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHH-HHhhcCCChhh-H-HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHH
Q 002752 14 VLKKVQEGVDVFDSIW-NKVYDTDNANQ-K-EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMER 90 (885)
Q Consensus 14 ~lKKV~EGve~Fd~iy-eK~~~a~n~nQ-K-EKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MEr 90 (885)
||.=+.+.++.|.+-| +|++.+-..=| | .-|....++.+++|+.+++.++.--.. ...|.| +||+..|+
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~-----ae~Lae---R~e~a~d~ 608 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRES-----AEKLAE---RYEEAKDK 608 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH---HHHHHHHH
Confidence 5555667777777665 65554322222 1 123444455566677777666654321 113333 35555555
Q ss_pred HHHHHhhhccc---c-ccccccCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCC-----chh
Q 002752 91 FKICEKETKTK---A-FSKEGLGQQPKTDPKEKAK-SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR-----PPR 160 (885)
Q Consensus 91 FK~vEKe~KtK---a-fSkEGL~~~~k~DP~ekeK-~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~-----~~r 160 (885)
-+.+++-++.= . .-.-.|..+++.--+|-++ .+..+-|...|++++++++..+..+++ .++.+++ ...
T Consensus 609 Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~--~~~~~~~s~~L~~~Q 686 (717)
T PF10168_consen 609 QEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIES--QKSPKKKSIVLSESQ 686 (717)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccccCCCccCCHHH
Confidence 55555543311 1 0011122211111111111 112234666666666666666665552 2222222 123
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 002752 161 LTHLETSITRHKAHIMKLEL 180 (885)
Q Consensus 161 ~~~le~~ieRhk~Hi~kLE~ 180 (885)
...++..+..+--||+.|=.
T Consensus 687 ~~~I~~iL~~~~~~I~~~v~ 706 (717)
T PF10168_consen 687 KRTIKEILKQQGEEIDELVK 706 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666665533
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.45 E-value=5.1 Score=51.27 Aligned_cols=63 Identities=19% Similarity=0.343 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhccc----cCC--CCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 002752 128 LNNLVSELESQIDSFEAELEGLTVK----KGK--TRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL 190 (885)
Q Consensus 128 L~~~IdeL~~QiE~~EaEiE~L~~K----K~K--~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~l 190 (885)
++..|..++..+...+.+++.+... +.. +.-+|++++...++..+.-=.-|..|+|+=++|.|
T Consensus 547 ~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i 615 (1293)
T KOG0996|consen 547 LKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRI 615 (1293)
T ss_pred HHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCC
Confidence 3445666777777777777776311 111 11257777777776666666778888888888865
No 29
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=89.72 E-value=4.5 Score=37.84 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccccccccCCCCCCCchHHHHHHH
Q 002752 50 KEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKT-----KAFSKEGLGQQPKTDPKEKAKSET 124 (885)
Q Consensus 50 KEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~Kt-----KafSkEGL~~~~k~DP~ekeK~E~ 124 (885)
..|.++|++|+++. .|...|..||.+....+.+-+|.+. +-|-..|=.. -+..+.++
T Consensus 3 ~~~~~~q~l~~~~~------------~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vf------v~~~~~ea 64 (105)
T cd00632 3 EQLAQLQQLQQQLQ------------AYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVL------VKQEKEEA 64 (105)
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHH------hhccHHHH
Confidence 36788888888876 4677778888877777777666653 4454444432 23455566
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhh
Q 002752 125 RDWLNNLVSELESQIDSFEAELEG 148 (885)
Q Consensus 125 ~~wL~~~IdeL~~QiE~~EaEiE~ 148 (885)
...|.+-++.|...++.++..++.
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~ 88 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEED 88 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 656666666655555555555444
No 30
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.71 E-value=0.65 Score=53.54 Aligned_cols=110 Identities=25% Similarity=0.273 Sum_probs=70.8
Q ss_pred HhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc------cccCCCCc-----hhhHH
Q 002752 95 EKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT------VKKGKTRP-----PRLTH 163 (885)
Q Consensus 95 EKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~------~KK~K~~~-----~r~~~ 163 (885)
++.-|.-.|++-+....... .+-.-..-=|..++..|.+|||.++.|+|+.. .|+|+++- .+..-
T Consensus 209 ~~g~k~~~f~~i~~~~~~~i----t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~ 284 (439)
T KOG2911|consen 209 SIGIKFLKFSQIPSQDASII----TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKL 284 (439)
T ss_pred hcceEEEeeccCCcccccCC----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 45555556666665422211 11122344567788999999999999999874 36666541 12334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCC-----------------------CCChhhhhhhhhHHHHHHHh
Q 002752 164 LETSITRHKAHIMKLELILRLLDND-----------------------ELSPEQVNDVKDLLEDYVER 208 (885)
Q Consensus 164 le~~ieRhk~Hi~kLE~lLRlL~N~-----------------------~ldpe~V~~IKddIeyYVE~ 208 (885)
+++.++|.---..+||.||-.+++- .+.+|.|+++-|+|+.-++.
T Consensus 285 ~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~ 352 (439)
T KOG2911|consen 285 LEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDR 352 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhh
Confidence 6667788778888999998877653 35677777766666665543
No 31
>PRK02224 chromosome segregation protein; Provisional
Probab=89.56 E-value=7.9 Score=47.66 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 002752 50 KEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKET 98 (885)
Q Consensus 50 KEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~ 98 (885)
++|.+|++..+++.. .+.+.+..||..-+++..++++.
T Consensus 509 ~~l~~l~~~~~~l~~-----------~~~~~~e~le~~~~~~~~l~~e~ 546 (880)
T PRK02224 509 DRIERLEERREDLEE-----------LIAERRETIEEKRERAEELRERA 546 (880)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHHHHHHH
Confidence 345555555555544 13334444555555555555554
No 32
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=88.85 E-value=1.9 Score=57.08 Aligned_cols=99 Identities=26% Similarity=0.377 Sum_probs=66.5
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHH----HHHhhcCCChhhHHHHH------HHHHHHHHHHHHHHHHHHhhhcc--
Q 002752 1 MGASRKLQGEIDRVLKKVQEGVDVFDSI----WNKVYDTDNANQKEKFE------ADLKKEIKKLQRYRDQIKTWIQS-- 68 (885)
Q Consensus 1 Maa~RKLQ~EIDr~lKKV~EGve~Fd~i----yeK~~~a~n~nQKEKlE------~DLKKEIKKLQR~RDQIKtW~~s-- 68 (885)
||...||+-|.||+.++.++-++.|.++ |+|+.+ +..+.|++++ +||++++.+|| ++||.-+..
T Consensus 1277 ~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~-ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~ 1352 (1822)
T KOG4674|consen 1277 VAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKS-EISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELN 1352 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4567899999999999999999887654 667665 4455555554 58888888887 777776654
Q ss_pred ccchhhH----HHHHHHHHHHHHHHHHHHH--Hhhhccccc
Q 002752 69 SEIKDKK----ALVDARKLIEREMERFKIC--EKETKTKAF 103 (885)
Q Consensus 69 ~dIKDK~----~L~e~RK~IE~~MErFK~v--EKe~KtKaf 103 (885)
++++++. .|.+.-...+...+-|.+= |...++++.
T Consensus 1353 ~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~ 1393 (1822)
T KOG4674|consen 1353 NEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKKAH 1393 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666543 4555555566666555433 555555544
No 33
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=88.41 E-value=4.7 Score=43.77 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHH--------HHHHHHhhhCCCCChhhhhhhh
Q 002752 128 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMK--------LELILRLLDNDELSPEQVNDVK 199 (885)
Q Consensus 128 L~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~k--------LE~lLRlL~N~~ldpe~V~~IK 199 (885)
...+|+.|+.-...++.++...-.+=-.-..+||..+...+-.+--|+.. +|.|-+.|++ + ++.
T Consensus 173 Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~-------~-d~~ 244 (269)
T cd07673 173 YKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQIGQVHEEFINNMAN-------T-TVE 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHh-------C-CHH
Confidence 45566666655555555554321000001124666666665444444432 2333332222 1 356
Q ss_pred hHHHHHHHhCCCC
Q 002752 200 DLLEDYVERNQDD 212 (885)
Q Consensus 200 ddIeyYVE~nqdD 212 (885)
.||..||+++...
T Consensus 245 ~Di~~fi~~~gTG 257 (269)
T cd07673 245 SLIQKFAESKGTG 257 (269)
T ss_pred HHHHHHHHhcCCC
Confidence 8899999988763
No 34
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=88.31 E-value=9.9 Score=48.91 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002752 160 RLTHLETSITRHKAHIMKLELILRLLDND 188 (885)
Q Consensus 160 r~~~le~~ieRhk~Hi~kLE~lLRlL~N~ 188 (885)
.+..++..+.+++.+...|+.-|+.|...
T Consensus 871 ~~~~l~~~l~~~~~~~~~l~~~l~~~~~~ 899 (1163)
T COG1196 871 EKEELEDELKELEEEKEELEEELRELESE 899 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665543
No 35
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=88.17 E-value=20 Score=37.72 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQ 56 (885)
|.--+|.++|++..|+..++++.+=+ ..|-++|.+-=|.++||-
T Consensus 3 L~d~~~~l~~~~~~g~~~~~~l~~f~------keRa~iE~eYak~L~kLa 46 (251)
T cd07653 3 LWDQFDNLEKHTQKGIDFLERYGKFV------KERAAIEQEYAKKLRKLV 46 (251)
T ss_pred chhhhHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 44568899999999999999987766 346667777666666664
No 36
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.07 E-value=8.9 Score=47.92 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhh
Q 002752 124 TRDWLNNLVSELESQIDSFEAELE 147 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE 147 (885)
..+|+.+.+.++..+++.+++++.
T Consensus 648 ~~~~~~~~l~~~~~~~~~~~~~~~ 671 (908)
T COG0419 648 LEELLQAALEELEEKVEELEAEIR 671 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445566666777766665
No 37
>PRK02224 chromosome segregation protein; Provisional
Probab=87.80 E-value=27 Score=43.13 Aligned_cols=26 Identities=8% Similarity=-0.022 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002752 161 LTHLETSITRHKAHIMKLELILRLLD 186 (885)
Q Consensus 161 ~~~le~~ieRhk~Hi~kLE~lLRlL~ 186 (885)
++++...+..++..+..++..|+.+.
T Consensus 421 ~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 421 RDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555544
No 38
>PRK01156 chromosome segregation protein; Provisional
Probab=87.76 E-value=22 Score=44.22 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=32.2
Q ss_pred ccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 002752 105 KEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 105 kEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
.+|.+......-.+.-+.+...++..-|.+|+.+++.++.+++.|.
T Consensus 451 ~~~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~ 496 (895)
T PRK01156 451 GQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDID 496 (895)
T ss_pred cCCCCCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566543322223566677888888888888888888888887764
No 39
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.72 E-value=4.7 Score=48.25 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhhccccchhhH-HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 002752 54 KLQRYRDQIKTWIQSSEIKDKK-ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLV 132 (885)
Q Consensus 54 KLQR~RDQIKtW~~s~dIKDK~-~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~I 132 (885)
+.-++-++|+ .-..++.|. .|.+-++.++...-.|++....||-|-=.=+|... ++--.-++|.+-++=|+..+
T Consensus 243 ~n~~l~e~i~---e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~--~l~~Eie~kEeE~e~lq~~~ 317 (581)
T KOG0995|consen 243 TNRELEEMIN---EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLE--MLKSEIEEKEEEIEKLQKEN 317 (581)
T ss_pred HHHHHHHHHH---HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3445667777 222222333 55556666889999999999999998877777653 12223467788889999999
Q ss_pred HHHHHHHHh
Q 002752 133 SELESQIDS 141 (885)
Q Consensus 133 deL~~QiE~ 141 (885)
++|+.|||.
T Consensus 318 d~Lk~~Ie~ 326 (581)
T KOG0995|consen 318 DELKKQIEL 326 (581)
T ss_pred HHHHHHHHh
Confidence 999998764
No 40
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=87.67 E-value=5 Score=53.95 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=40.7
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhh--HHHHHHHHH
Q 002752 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLK 49 (885)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQ--KEKlE~DLK 49 (885)
+.|+|+.|.+.+.+++.|-.+.++.++.++..+....+ |-|+|.++.
T Consensus 1323 ~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~ 1371 (1930)
T KOG0161|consen 1323 ALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVL 1371 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999988776554 778887665
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=87.59 E-value=4.2 Score=52.11 Aligned_cols=12 Identities=42% Similarity=0.792 Sum_probs=5.7
Q ss_pred ccCCCcccccCC
Q 002752 215 EFSDVDELYHLL 226 (885)
Q Consensus 215 ef~dde~iYd~L 226 (885)
+|++...-|+.|
T Consensus 971 e~e~~~~r~~~l 982 (1163)
T COG1196 971 EYEEVEERYEEL 982 (1163)
T ss_pred HHHHHHHHHHHH
Confidence 444445555544
No 42
>PTZ00464 SNF-7-like protein; Provisional
Probab=87.28 E-value=2.3 Score=45.08 Aligned_cols=90 Identities=14% Similarity=0.274 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhc--cccCCC------Cc------hhhHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 002752 122 SETRDWLNNLVSELESQIDSFEAELEGLT--VKKGKT------RP------PRLTHLETSITRHKAHIMKLELILRLLD- 186 (885)
Q Consensus 122 ~E~~~wL~~~IdeL~~QiE~~EaEiE~L~--~KK~K~------~~------~r~~~le~~ieRhk~Hi~kLE~lLRlL~- 186 (885)
.++..=|.+-++.|.++|+.++.|++... .|++|. +. .|.--++..+++..-++.+||.++-.|+
T Consensus 17 ~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~ 96 (211)
T PTZ00464 17 EDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTES 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557788899999999999999887773 222221 10 0222233334444344444444332222
Q ss_pred ---------------------CCCCChhhhhhhhhHHHHHHHhCCC
Q 002752 187 ---------------------NDELSPEQVNDVKDLLEDYVERNQD 211 (885)
Q Consensus 187 ---------------------N~~ldpe~V~~IKddIeyYVE~nqd 211 (885)
|..++.|+|++|.|+|+..++..++
T Consensus 97 a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~E 142 (211)
T PTZ00464 97 VKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQE 142 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999975543
No 43
>PRK03918 chromosome segregation protein; Provisional
Probab=87.28 E-value=15 Score=45.14 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002752 170 RHKAHIMKLELILRLLD 186 (885)
Q Consensus 170 Rhk~Hi~kLE~lLRlL~ 186 (885)
+.+-.+..|+.+-+-+.
T Consensus 366 ~~~~~~~~l~~l~~~l~ 382 (880)
T PRK03918 366 EAKAKKEELERLKKRLT 382 (880)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33334444444444444
No 44
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=87.19 E-value=7.1 Score=36.96 Aligned_cols=82 Identities=15% Similarity=0.261 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccccccccCCCCCCCchHHHH
Q 002752 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKT-----KAFSKEGLGQQPKTDPKEKAK 121 (885)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~Kt-----KafSkEGL~~~~k~DP~ekeK 121 (885)
.|...|.++|++|.+|+ .|...|..+|.++...+.+.++.+. +-|--.|=+. -++.+
T Consensus 4 ~~q~~~~~~q~~q~~~~------------~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vl------v~~~~ 65 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQ------------AVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLL------VKTDK 65 (110)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhh------heecH
Confidence 46678999999999987 4677788888888887777777643 3333333221 13344
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHh
Q 002752 122 SETRDWLNNLVSELESQIDSFEAEL 146 (885)
Q Consensus 122 ~E~~~wL~~~IdeL~~QiE~~EaEi 146 (885)
.++..-|++-|+.|+..|+.++..+
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~ 90 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQE 90 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444444444444444443
No 45
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.00 E-value=9.4 Score=45.78 Aligned_cols=60 Identities=22% Similarity=0.332 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (885)
||..+++|.|.-.|-+..-..+-+.+.. -..+-++++..|..+-++...|+.+.|.+...
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~--l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~ 200 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQ--LREEVERLEAELEQEEEEMEQLKQQQKELTES 200 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777666666655555444444411 23334555555555555555555555544444
No 46
>PRK11637 AmiB activator; Provisional
Probab=86.84 E-value=13 Score=42.61 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 123 ETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 123 E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
+..+-+.....+|..+.+.++.+++.+
T Consensus 170 ~~l~~l~~~~~~L~~~k~~le~~~~~l 196 (428)
T PRK11637 170 ETIAELKQTREELAAQKAELEEKQSQQ 196 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 47
>PRK03918 chromosome segregation protein; Provisional
Probab=86.29 E-value=25 Score=43.22 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhhC
Q 002752 169 TRHKAHIMKLELILRLLDN 187 (885)
Q Consensus 169 eRhk~Hi~kLE~lLRlL~N 187 (885)
+++.--+..|+.-++-|.+
T Consensus 455 ~~~~~ei~~l~~~~~~l~~ 473 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEE 473 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554
No 48
>PF13166 AAA_13: AAA domain
Probab=86.24 E-value=22 Score=42.74 Aligned_cols=27 Identities=33% Similarity=0.451 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 123 ETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 123 E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
...+=++..|++.++.++.++.+.+.+
T Consensus 370 ~~i~~~n~~i~~~n~~~~~~~~~~~~~ 396 (712)
T PF13166_consen 370 SIIDELNELIEEHNEKIDNLKKEQNEL 396 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544
No 49
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.88 E-value=16 Score=42.61 Aligned_cols=127 Identities=20% Similarity=0.224 Sum_probs=66.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhH--HHHHHHHH
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK--ALVDARKL 83 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~--~L~e~RK~ 83 (885)
..|+||.++-++|.+--+ ++.|||.+||.-=+.+-+++.||+.-....+-.+|. .+...-..
T Consensus 42 q~q~ei~~~~~~i~~~~~----------------~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 42 QIQKEIAALEKKIREQQD----------------QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 456666666666665433 345667666665555566666666554442222221 11111112
Q ss_pred HHHH-HHHHHHHHhhhccccccccccCCC--CCCCchH-HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 002752 84 IERE-MERFKICEKETKTKAFSKEGLGQQ--PKTDPKE-KAKSETRDWLNNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 84 IE~~-MErFK~vEKe~KtKafSkEGL~~~--~k~DP~e-keK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
+|.+ -|++..+.+---.=.. -|+.-. -.+.|++ .......-++..+.-++..+|+.+++....|.
T Consensus 106 l~~q~r~qr~~La~~L~A~~r--~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~ 174 (420)
T COG4942 106 LEVQEREQRRRLAEQLAALQR--SGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLA 174 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--ccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 2222 2555555444332222 233221 1345554 23345667888888888888888888877774
No 50
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=85.70 E-value=33 Score=41.42 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC-------CChhhhhhhhh
Q 002752 128 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE-------LSPEQVNDVKD 200 (885)
Q Consensus 128 L~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~-------ldpe~V~~IKd 200 (885)
..+.+++|+++++.++.+++.+..+..+-.......+....++......+.+.+.++...+. +..++++++++
T Consensus 213 p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWvP~~~~~~l~~ 292 (646)
T PRK05771 213 PSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKLKE 292 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEeehhHHHHHHH
Confidence 46677777777777777776663221111111111222233444444455555555555543 44778888888
Q ss_pred HHHHH
Q 002752 201 LLEDY 205 (885)
Q Consensus 201 dIeyY 205 (885)
.++..
T Consensus 293 ~l~~~ 297 (646)
T PRK05771 293 LIDKA 297 (646)
T ss_pred HHHHh
Confidence 77753
No 51
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=85.59 E-value=12 Score=34.54 Aligned_cols=95 Identities=16% Similarity=0.252 Sum_probs=63.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCh--hhHHHHHHHHHHHHHHHHHHHHHHHhhhcc---------ccchh-h
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNA--NQKEKFEADLKKEIKKLQRYRDQIKTWIQS---------SEIKD-K 74 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~--nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s---------~dIKD-K 74 (885)
+-.+|...+.+|+.-|..++..+.++..+... .-|++++.....=-+.-+..+..||.--.. .+..- +
T Consensus 9 ~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~ 88 (117)
T smart00503 9 KVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRK 88 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHH
Confidence 45789999999999999999999999987763 347777664333333334444444443222 12222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002752 75 KALVDARKLIEREMERFKICEKETKTK 101 (885)
Q Consensus 75 ~~L~e~RK~IE~~MErFK~vEKe~KtK 101 (885)
....-.++..-..|.+|..+++..+.+
T Consensus 89 ~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 115 (117)
T smart00503 89 AQTEKLRKKFKEVMNEFQRLQRKYRER 115 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677788999999999987754
No 52
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.49 E-value=19 Score=46.20 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 002752 23 DVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQI 62 (885)
Q Consensus 23 e~Fd~iyeK~~~a~n-~nQKEKlE~DLKKEIKKLQR~RDQI 62 (885)
+.|-++++.+..+.. -.++++-=.-|||+||-++-.+++|
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~ 254 (1074)
T KOG0250|consen 214 ESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNL 254 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344444444443332 2345555566777777777776644
No 53
>PTZ00464 SNF-7-like protein; Provisional
Probab=85.36 E-value=32 Score=36.74 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=21.3
Q ss_pred HHHHHHHHhhh--ccccchhhH-HHHHHHHHHHHHHHH
Q 002752 56 QRYRDQIKTWI--QSSEIKDKK-ALVDARKLIEREMER 90 (885)
Q Consensus 56 QR~RDQIKtW~--~s~dIKDK~-~L~e~RK~IE~~MEr 90 (885)
+++|++||.-- +.+.+|.+. .++-.||+.|.++++
T Consensus 42 ~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~ 79 (211)
T PTZ00464 42 MKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDM 79 (211)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667776432 223345543 577778888888876
No 54
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.24 E-value=12 Score=40.66 Aligned_cols=49 Identities=14% Similarity=0.346 Sum_probs=25.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (885)
+|++.|++++.|++.+--..|+++ .+|.-.+|.||.+.=+|+-|.|+++
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~l---------e~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDL---------ENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444444443 2344555666665555555555555
No 55
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=85.00 E-value=14 Score=47.73 Aligned_cols=89 Identities=26% Similarity=0.258 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccccch-hhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHH
Q 002752 48 LKKEIKKLQRYRDQIKTWIQSSEIK-DKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRD 126 (885)
Q Consensus 48 LKKEIKKLQR~RDQIKtW~~s~dIK-DK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~ 126 (885)
+++||+|+|-+|..--.-++.++-. -+..|.-.++.++.+.|+- ..|-|-. ++..++.+..++..
T Consensus 642 ~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~---~~E~~~~-----------~L~~~e~~~~e~~~ 707 (1317)
T KOG0612|consen 642 GKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQE---NAEHHRL-----------RLQDKEAQMKEIES 707 (1317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----------HHhhHHHHHHHHHH
Confidence 5566666666655554444444431 2333444444444444442 2222221 23334777888888
Q ss_pred HHHHHH---HHHHHHHHhHHHHhhhhc
Q 002752 127 WLNNLV---SELESQIDSFEAELEGLT 150 (885)
Q Consensus 127 wL~~~I---deL~~QiE~~EaEiE~L~ 150 (885)
||.+-. ..+..-.-..++|+|.|.
T Consensus 708 ~lseek~ar~k~e~~~~~i~~e~e~L~ 734 (1317)
T KOG0612|consen 708 KLSEEKSAREKAENLLLEIEAELEYLS 734 (1317)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHh
Confidence 887532 233333344566666664
No 56
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.98 E-value=48 Score=35.45 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhCCCCC-hhhhhhhhhH
Q 002752 175 IMKLELILRLLDNDELS-PEQVNDVKDL 201 (885)
Q Consensus 175 i~kLE~lLRlL~N~~ld-pe~V~~IKdd 201 (885)
..+|+.|-.+|++..|+ .|++..|-|-
T Consensus 130 ~~Rl~~L~~~l~~~dv~~~ek~r~vlea 157 (251)
T PF11932_consen 130 QERLARLRAMLDDADVSLAEKFRRVLEA 157 (251)
T ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 55778888889999887 4555555433
No 57
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.87 E-value=31 Score=33.73 Aligned_cols=122 Identities=18% Similarity=0.322 Sum_probs=75.1
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCh--hhHHHHHHHHHH---HHHHHHHHHHHHHhhhccccchhhHHHH
Q 002752 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNA--NQKEKFEADLKK---EIKKLQRYRDQIKTWIQSSEIKDKKALV 78 (885)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~--nQKEKlE~DLKK---EIKKLQR~RDQIKtW~~s~dIKDK~~L~ 78 (885)
...|+.||.++...+.+-......+-+.+..-... .-.+|||.+|-+ .|+.|+++|++...- +..+.
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~--------~~~~~ 76 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQEL--------QQEIN 76 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHH
Confidence 34577788888777777777776666666533221 226789999875 699999999987653 23456
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 79 DARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 79 e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
+.|..++.....+...|..-.. ....-..-..=+..-|++|+.|+..|-..||.+
T Consensus 77 ~l~~~~~~a~~~l~~~e~sw~~----------------qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 77 ELKAEAESAKAELEESEASWEE----------------QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666666665444432110 111112233445566777777777777777665
No 58
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=84.86 E-value=2.5 Score=43.76 Aligned_cols=63 Identities=24% Similarity=0.454 Sum_probs=38.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccchhhHHHHHHHHHH
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS-SEIKDKKALVDARKLI 84 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s-~dIKDK~~L~e~RK~I 84 (885)
.+|+|++.+|.+...-|+. .+.|||.|||+|.+-=+++..-+.. ..+|+|. -.+
T Consensus 102 QVqqeL~~tf~rL~~~Vd~-------------------~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa------~~L 156 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQ-------------------TKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKA------NWL 156 (171)
T ss_dssp --------HHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 4678888888887766654 4568999999888777777655443 3344444 567
Q ss_pred HHHHHHHHH
Q 002752 85 EREMERFKI 93 (885)
Q Consensus 85 E~~MErFK~ 93 (885)
|.+.|+|+.
T Consensus 157 ~~eL~~F~~ 165 (171)
T PF04799_consen 157 ESELERFQE 165 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888899864
No 59
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=84.85 E-value=43 Score=36.70 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh--------------------------cCC-------------------ChhhHH
Q 002752 8 QGEIDRVLKKVQEGVDVFDSIWNKVY--------------------------DTD-------------------NANQKE 42 (885)
Q Consensus 8 Q~EIDr~lKKV~EGve~Fd~iyeK~~--------------------------~a~-------------------n~nQKE 42 (885)
---+|.++|.|+.||+.+++|..=+. ... -+.|+|
T Consensus 4 ~Dqf~~~~k~~~~Gi~~l~~~~~F~keRa~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~~~s~~~~L~~~~~~a~q~e 83 (252)
T cd07675 4 WDQFDNLDKHTQWGIDFLERYAKFVKERLEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCLSFYNILNELNDYAGQRE 83 (252)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999888654221 001 156788
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 002752 43 KFEADLKKEI-----KKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFK 92 (885)
Q Consensus 43 KlE~DLKKEI-----KKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK 92 (885)
.+..+|..+| +..++||.++|.++ ++-+.|...+.....+||+-|
T Consensus 84 ~~a~~l~~~v~~~l~~~~~~l~~~rk~~~-----~~~~klqk~l~~~~~~leksK 133 (252)
T cd07675 84 VVAEEMGHRVYGELMRYSHDLKGERKMHL-----QEGRKAQQYLDMCWKQMDNSK 133 (252)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 8888885543 45588889999887 444456666666666666543
No 60
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=84.73 E-value=7.8 Score=37.49 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 002752 82 KLIEREMERFKICEKETKTKAFSKEGLGQQP-KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEG 148 (885)
Q Consensus 82 K~IE~~MErFK~vEKe~KtKafSkEGL~~~~-k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~ 148 (885)
..||..+++|+.+.++...+.-.-+.|.... ++- +.. ......|...++.|+..-+.+...++.
T Consensus 33 ~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~--~~~-~~~~~~i~~~~~~l~~~w~~l~~~~~~ 97 (213)
T cd00176 33 ESVEALLKKHEALEAELAAHEERVEALNELGEQLI--EEG-HPDAEEIQERLEELNQRWEELRELAEE 97 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH--hcC-CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777888888888776555555543210 000 000 023456666777777776666666543
No 61
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.53 E-value=9.4 Score=39.70 Aligned_cols=99 Identities=25% Similarity=0.396 Sum_probs=55.5
Q ss_pred ccccCCCCCCC--------c--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCc-hhhHHHHHHHHHHHH
Q 002752 105 KEGLGQQPKTD--------P--KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRP-PRLTHLETSITRHKA 173 (885)
Q Consensus 105 kEGL~~~~k~D--------P--~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~-~r~~~le~~ieRhk~ 173 (885)
.+||...+|.. | .-..+....+=|+.-|+.++..++.++.+++.+ ++++... +|...|+ .++..+-
T Consensus 41 DDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~--~~~r~~~~eR~~~l~-~l~~l~~ 117 (188)
T PF03962_consen 41 DDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA--KKGREESEEREELLE-ELEELKK 117 (188)
T ss_pred ccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccccHHHHHHHH-HHHHHHH
Confidence 36666666554 2 223445555666666677777777777777666 4444332 3432222 2223333
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002752 174 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 208 (885)
Q Consensus 174 Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~ 208 (885)
.+..|+.=|. .-...||+.|+.+++++..+++.
T Consensus 118 ~~~~l~~el~--~~~~~Dp~~i~~~~~~~~~~~~~ 150 (188)
T PF03962_consen 118 ELKELKKELE--KYSENDPEKIEKLKEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHH
Confidence 3333333333 22335899999999988887764
No 62
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=84.32 E-value=18 Score=38.86 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=13.6
Q ss_pred CCChhhhhhhhhHHHHHH
Q 002752 189 ELSPEQVNDVKDLLEDYV 206 (885)
Q Consensus 189 ~ldpe~V~~IKddIeyYV 206 (885)
.|+-|.|+=+|+-|=-|.
T Consensus 204 ~lEeeRi~f~k~~lw~~~ 221 (240)
T cd07672 204 KQECERINFFRNAVWTHV 221 (240)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788888888887665
No 63
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=84.15 E-value=14 Score=44.18 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--------ccchhhHHHHHH
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS--------SEIKDKKALVDA 80 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s--------~dIKDK~~L~e~ 80 (885)
.|+=++-+.|.-.++-+.+++++ ..|...++.|.=.+.-|+-++||..+.. .|.+.-..+.++
T Consensus 338 rEvl~~~d~ie~ml~~~~~~~~~---------~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~ 408 (533)
T COG1283 338 REVLRLGDSIEQMLERLYEYIEG---------DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDA 408 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 46666666666665555555541 4577778888888888888999988764 344444466676
Q ss_pred HHHHHH---HHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCC
Q 002752 81 RKLIER---EMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR 157 (885)
Q Consensus 81 RK~IE~---~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~ 157 (885)
=+-||+ =+|+ -||.-.|...++.+ -.|....|......-+++.++.-+..+...-..+. ++.-.+
T Consensus 409 a~~lE~IgDiie~--l~~~~~kk~~~~~~---------fse~~~~el~~l~~~~~~n~~~a~~~l~~~D~~~a-r~lv~~ 476 (533)
T COG1283 409 AINLEHIGDIIER--LLELADKKIANGRA---------FSEDGLEELDALFALTLENLRLAISVLVTGDLELA-RRLVER 476 (533)
T ss_pred HHhHHHHHHHHHH--HHHHHHHHHhcCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHH
Confidence 666665 3455 45544443322211 12444456666666666666666555544322211 010011
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhh
Q 002752 158 PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVK 199 (885)
Q Consensus 158 ~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IK 199 (885)
.+++.++|+ +-+|.|+.||..--..++-+.+=-|-|.++|
T Consensus 477 k~~~r~~e~--~~~k~H~~Rl~~g~~s~~t~~l~lDii~dlk 516 (533)
T COG1283 477 KKRVRRLER--RSSKRHLDRLRDGAASVETSSLHLDILRDLK 516 (533)
T ss_pred HHHHHHHHH--HHHHHHHHHHHcCcchhhhchhHHHHHHHHH
Confidence 112222332 2367889888877777777765444444443
No 64
>PHA00425 DNA packaging protein, small subunit
Probab=83.94 E-value=2.4 Score=39.29 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=42.7
Q ss_pred HHHHHHhHHHHhhhhccccC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002752 135 LESQIDSFEAELEGLTVKKG----KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQ 210 (885)
Q Consensus 135 L~~QiE~~EaEiE~L~~KK~----K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~nq 210 (885)
|.+=+|.+..|+.++-..-- |..+.=-..|...++||||||.||- .|..-+-++-+-++.|-+--.
T Consensus 6 L~k~LemlDTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHkF~isKl~----------pD~~iLg~la~~l~ey~~~~g 75 (88)
T PHA00425 6 LIKFLEMLDTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHKFQISKLQ----------PDENILGGLAAALEEYKEKVG 75 (88)
T ss_pred HHHHHHHHhHHHHHHHHHHhcCccccChHHHHHHHHHHHHhcccccccC----------CcHHHHHHHHHHHHHHHHhcC
Confidence 44445666777666532211 3334445678888999999999983 244445577788888877554
Q ss_pred C
Q 002752 211 D 211 (885)
Q Consensus 211 d 211 (885)
.
T Consensus 76 ~ 76 (88)
T PHA00425 76 A 76 (88)
T ss_pred C
Confidence 4
No 65
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=83.33 E-value=25 Score=45.66 Aligned_cols=27 Identities=7% Similarity=0.243 Sum_probs=17.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHh
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSIWNKV 32 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~iyeK~ 32 (885)
.|+++++.+-+++.+..+.++++-+.+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l 630 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQL 630 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777776666654443
No 66
>PRK09039 hypothetical protein; Validated
Probab=83.21 E-value=31 Score=38.94 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
....|+.-|+.|+.|+..+|++|+.+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888776
No 67
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.19 E-value=30 Score=43.29 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=30.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcC-CChhhHHHHHHHHHHHH---HHHHHHHH
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDT-DNANQKEKFEADLKKEI---KKLQRYRD 60 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a-~n~nQKEKlE~DLKKEI---KKLQR~RD 60 (885)
|-|.|+||--+-+.|--.-=.+--++.+.. ..-.+||+.|.+-|+++ |.|+|.|+
T Consensus 324 kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQRe 382 (1118)
T KOG1029|consen 324 KGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQRE 382 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777776555444322111222222222 23347888888888876 56777775
No 68
>PRK01156 chromosome segregation protein; Provisional
Probab=82.95 E-value=31 Score=42.92 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCCC
Q 002752 169 TRHKAHIMKLELILRLLDNDEL 190 (885)
Q Consensus 169 eRhk~Hi~kLE~lLRlL~N~~l 190 (885)
++.+.-+..|+.+-+.|++..+
T Consensus 729 ~~~~~~~~~l~~~r~~l~k~~~ 750 (895)
T PRK01156 729 KKIKKAIGDLKRLREAFDKSGV 750 (895)
T ss_pred HHHHHHHHHHHHHHHHhhhccc
Confidence 3334456666677777776555
No 69
>PRK09343 prefoldin subunit beta; Provisional
Probab=82.75 E-value=23 Score=34.37 Aligned_cols=44 Identities=16% Similarity=0.385 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002752 44 FEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETK 99 (885)
Q Consensus 44 lE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~K 99 (885)
+-..|-.+|.+||.++++|+. +...|..+|.++-..+.+-+|.+
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~------------~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLER------------LLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778899999999999974 66677777777777666666654
No 70
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=82.75 E-value=7 Score=41.13 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=20.2
Q ss_pred CCCCChhhhhhhhhHHHHHHHhCCC
Q 002752 187 NDELSPEQVNDVKDLLEDYVERNQD 211 (885)
Q Consensus 187 N~~ldpe~V~~IKddIeyYVE~nqd 211 (885)
|..++.|+|++|.|+|+..++-.++
T Consensus 124 ~k~~~idkVd~lmDei~E~~e~~~E 148 (191)
T PTZ00446 124 NNEINTQKVEKIIDTIQENKDIQEE 148 (191)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999998875543
No 71
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=82.34 E-value=28 Score=43.55 Aligned_cols=183 Identities=19% Similarity=0.314 Sum_probs=88.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh-HHHHHHHHHHH
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK-KALVDARKLIE 85 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK-~~L~e~RK~IE 85 (885)
||..||.+.--+.+==..-+..-+++.+-.....-++.-..|.+-+..+.|++..|.---...+ +.+ ..|..+++.++
T Consensus 397 Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e-~e~~Eele~~~~e~~ 475 (775)
T PF10174_consen 397 LQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAE-KERQEELETYQKELK 475 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3333333333333333334444455543111112223335555555555555555543322233 333 46677777777
Q ss_pred HHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHH------HHHHHHHHHHhHHHHhhhhc--ccc---C
Q 002752 86 REMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNN------LVSELESQIDSFEAELEGLT--VKK---G 154 (885)
Q Consensus 86 ~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~------~IdeL~~QiE~~EaEiE~L~--~KK---~ 154 (885)
.....+..++++.--|.-+-+ ..|.++.....+ -|+.|.-.+|+.--+++.|. .+| .
T Consensus 476 ~lk~~~~~LQ~eLsEk~~~l~------------~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~ 543 (775)
T PF10174_consen 476 ELKAKLESLQKELSEKELQLE------------DAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRAN 543 (775)
T ss_pred HHHHHHHHHhhhhHHHHHHHH------------HhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 777777777766554443222 112222111111 12333333333333333331 112 1
Q ss_pred CCCchhhHHHHHHHHHH-------HHHHHHHHHHHHhhhCCCCCh-hhhhhhhhHH
Q 002752 155 KTRPPRLTHLETSITRH-------KAHIMKLELILRLLDNDELSP-EQVNDVKDLL 202 (885)
Q Consensus 155 K~~~~r~~~le~~ieRh-------k~Hi~kLE~lLRlL~N~~ldp-e~V~~IKddI 202 (885)
-+...|+..|+.-+.+| +--|.+|-.+|+-++|...+- -+|.++...+
T Consensus 544 ~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeL 599 (775)
T PF10174_consen 544 AELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKEL 599 (775)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11234666677666555 667899999999999998874 5566666553
No 72
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.28 E-value=60 Score=32.88 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002752 76 ALVDARKLIEREMERFKICE 95 (885)
Q Consensus 76 ~L~e~RK~IE~~MErFK~vE 95 (885)
.|...+..++..++.|++++
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554
No 73
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=81.72 E-value=20 Score=33.68 Aligned_cols=32 Identities=38% Similarity=0.563 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 118 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 118 ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
+....++.+||.+-|+.|+.+++.++.+++.+
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~ 113 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKL 113 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999887765
No 74
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=81.59 E-value=18 Score=33.96 Aligned_cols=38 Identities=11% Similarity=0.262 Sum_probs=29.1
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002752 33 YDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE 70 (885)
Q Consensus 33 ~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~d 70 (885)
....+...+++++.+++...+++.+.-+.++....+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (181)
T PF12729_consen 69 LLATDPEERQEIEKEIDEARAEIDEALEEYEKLILSPE 106 (181)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34567777888888888888888888888887665554
No 75
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=81.37 E-value=19 Score=38.74 Aligned_cols=30 Identities=7% Similarity=0.322 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCCC--hhhHHHHHHHHHHHHH
Q 002752 24 VFDSIWNKVYDTDN--ANQKEKFEADLKKEIK 53 (885)
Q Consensus 24 ~Fd~iyeK~~~a~n--~nQKEKlE~DLKKEIK 53 (885)
.|...|+.+..... +++++.+-..|..+|.
T Consensus 61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~ 92 (258)
T cd07655 61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVV 92 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777765432 4566666666666554
No 76
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=81.11 E-value=85 Score=36.02 Aligned_cols=92 Identities=18% Similarity=0.331 Sum_probs=57.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhcCC----------------------ChhhHHHHHHHHHHHHHHHHHHHHHH
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD----------------------NANQKEKFEADLKKEIKKLQRYRDQI 62 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~----------------------n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (885)
+-...|+++.+++|.+-|+........++.+- ..--+|.-|.+|+||+.=|...++.+
T Consensus 56 ~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL 135 (384)
T PF03148_consen 56 RFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLL 135 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999988888777776221 12236678889999987766666555
Q ss_pred HhhhccccchhhHHHHHHHHHHHHHHH-HHHHHHhh
Q 002752 63 KTWIQSSEIKDKKALVDARKLIEREME-RFKICEKE 97 (885)
Q Consensus 63 KtW~~s~dIKDK~~L~e~RK~IE~~ME-rFK~vEKe 97 (885)
+.-+..-.-.= ..|.++|..+|..+. +|.+++=.
T Consensus 136 ~~~l~~~~eQl-~~lr~ar~~Le~Dl~dK~~A~~ID 170 (384)
T PF03148_consen 136 QRTLEQAEEQL-RLLRAARYRLEKDLSDKFEALEID 170 (384)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433211111 257777888777652 44444433
No 77
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.94 E-value=37 Score=44.83 Aligned_cols=72 Identities=11% Similarity=0.205 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 002752 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKI 93 (885)
Q Consensus 14 ~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~ 93 (885)
.+..+.|+++.++.+-+++ .+|+++|+.|.+++..-..|..-..-.....+...+..++..++.-..
T Consensus 221 ~i~~l~e~~~~~~~~~~~l-------------e~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1353)
T TIGR02680 221 ELTDVADALEQLDEYRDEL-------------ERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGR 287 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999998876666 478899999999998888887754444444566666666666666555
Q ss_pred HHhhh
Q 002752 94 CEKET 98 (885)
Q Consensus 94 vEKe~ 98 (885)
++.+.
T Consensus 288 ~~~~~ 292 (1353)
T TIGR02680 288 ARDEL 292 (1353)
T ss_pred HHHHH
Confidence 55443
No 78
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=80.84 E-value=1.3e+02 Score=37.79 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=27.3
Q ss_pred chhhhHHHHHHHH--HHHHH-HHHHHHHHhhcCCChh------hHHHHHHHHHHHHH--------------HHHHHHHHH
Q 002752 6 KLQGEIDRVLKKV--QEGVD-VFDSIWNKVYDTDNAN------QKEKFEADLKKEIK--------------KLQRYRDQI 62 (885)
Q Consensus 6 KLQ~EIDr~lKKV--~EGve-~Fd~iyeK~~~a~n~n------QKEKlE~DLKKEIK--------------KLQR~RDQI 62 (885)
||..|||+-|-.- ..|+. -|+.+-+-|..++..+ -+||.| -||.||+ ||.-||+.+
T Consensus 466 KLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~-kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~ 544 (762)
T PLN03229 466 KLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIE-KLKDEFNKRLSRAPNYLSLKYKLDMLNEFS 544 (762)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHH-HHHHHHHHhhhcccccHHHHHHHHHHHHHH
Confidence 5555555544321 12221 1333333444554444 377633 4566654 456666666
Q ss_pred H
Q 002752 63 K 63 (885)
Q Consensus 63 K 63 (885)
+
T Consensus 545 ~ 545 (762)
T PLN03229 545 R 545 (762)
T ss_pred H
Confidence 6
No 79
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=80.66 E-value=75 Score=39.78 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 002752 74 KKALVDARKLIEREMER 90 (885)
Q Consensus 74 K~~L~e~RK~IE~~MEr 90 (885)
|.++.+.++-||.+||.
T Consensus 603 keki~~~~~Ei~~eie~ 619 (762)
T PLN03229 603 KEKVEKMKKEIELELAG 619 (762)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44677788888888776
No 80
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.57 E-value=82 Score=38.34 Aligned_cols=124 Identities=11% Similarity=0.129 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH-----HHHHHH
Q 002752 13 RVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDAR-----KLIERE 87 (885)
Q Consensus 13 r~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~R-----K~IE~~ 87 (885)
.+|.-....+++|.+-|-+.+ +|.-.++.+-|+-|||..||=-.=+ .|...++.+++-| ++||+.
T Consensus 559 E~~~lL~~a~~vfrEqYi~~~--------dlV~~e~qrH~~~l~~~k~~QlQ~l--~~~~eer~~i~e~a~~La~R~eea 628 (741)
T KOG4460|consen 559 ECLQLLSRATQVFREQYILKQ--------DLVKEEIQRHVKLLCDQKKKQLQDL--SYCREERKSLREMAERLADRYEEA 628 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556677888888877663 4566667777777776554322211 1222232222221 345555
Q ss_pred HHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 002752 88 MERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEG 148 (885)
Q Consensus 88 MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~ 148 (885)
.|+--.+|+-+|.- -+.-|-....-.+.+-.=|.|. .++...++.|..-||...+-..+
T Consensus 629 ~e~qe~L~~~~~~L-~~~~~~~lp~l~~AErdFk~El-q~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 629 KEKQEDLMNRMKKL-LHSFHSELPVLSDAERDFKKEL-QLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHhHHHHHHHHHHH-HhcccccCCcchhHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH
Confidence 55555566655421 1111111111122222223444 55555555555555555544443
No 81
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=80.25 E-value=4.5 Score=37.23 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=44.2
Q ss_pred HHHHHHhHHHHhhhhccc--c--CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002752 135 LESQIDSFEAELEGLTVK--K--GKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQ 210 (885)
Q Consensus 135 L~~QiE~~EaEiE~L~~K--K--~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~nq 210 (885)
|.+=+|.+..|+...-.. | -|..+.=-..+...++||||||.|| ..|.+.+-++.+-++.|-+.-.
T Consensus 4 L~klLemlDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~iskl----------~pd~~~LG~L~~aL~ey~~~~g 73 (82)
T PF11123_consen 4 LEKLLEMLDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQISKL----------QPDENILGELAAALEEYKKMVG 73 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccchhhhc----------CccHHHHHHHHHHHHHHHHHcC
Confidence 344456666666554321 1 1233444566788899999999998 2456667789999999987554
Q ss_pred C
Q 002752 211 D 211 (885)
Q Consensus 211 d 211 (885)
.
T Consensus 74 ~ 74 (82)
T PF11123_consen 74 A 74 (82)
T ss_pred C
Confidence 4
No 82
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=80.12 E-value=30 Score=43.03 Aligned_cols=16 Identities=25% Similarity=0.634 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 002752 46 ADLKKEIKKLQRYRDQ 61 (885)
Q Consensus 46 ~DLKKEIKKLQR~RDQ 61 (885)
..|+++.+|++|+++.
T Consensus 196 ~~L~~q~~~a~~~~~~ 211 (1179)
T TIGR02168 196 NELERQLKSLERQAEK 211 (1179)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666665543
No 83
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=80.03 E-value=23 Score=48.17 Aligned_cols=57 Identities=30% Similarity=0.284 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhcccc-------------CCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002752 128 LNNLVSELESQIDSFEAELEGLTVKK-------------GKTRPPRLTHLETSITRHKAHIMKLELILRL 184 (885)
Q Consensus 128 L~~~IdeL~~QiE~~EaEiE~L~~KK-------------~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRl 184 (885)
++..+++|..|....|.|+-.+..|- .|.-+.||.+|+..++--+--..|+|.-.+-
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~d 1129 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRD 1129 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555543211 1111335555555555444444555544443
No 84
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=80.00 E-value=83 Score=37.82 Aligned_cols=84 Identities=19% Similarity=0.359 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhhH-HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHH
Q 002752 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKK-ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETR 125 (885)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~dIKDK~-~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~ 125 (885)
++.++|+.|+..+++.+.-+..-+++.-. .+.+--..|+.- |-.+|||.+.|.|=++.+
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~l---Yd~le~E~~Ak~~V~~~~----------------- 308 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQL---YDILEKEVEAKKYVEKNL----------------- 308 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhH-----------------
Confidence 57778888888888888888777777644 343333444433 234688877776644433
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhc
Q 002752 126 DWLNNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 126 ~wL~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
.-|.+.|+.++++...+..|++.++
T Consensus 309 ~~l~~~l~~~~~~~~~l~~e~~~v~ 333 (560)
T PF06160_consen 309 KELYEYLEHAKEQNKELKEELERVS 333 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344566666777777777777663
No 85
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=79.96 E-value=12 Score=44.99 Aligned_cols=72 Identities=22% Similarity=0.409 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcCCChhh-HHHHHHHHHHHHHHHHHHHHHHHhhhccccchh-----h-HHHHHHHHHHHHHHHHHHHHH
Q 002752 24 VFDSIWNKVYDTDNANQ-KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD-----K-KALVDARKLIEREMERFKICE 95 (885)
Q Consensus 24 ~Fd~iyeK~~~a~n~nQ-KEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKD-----K-~~L~e~RK~IE~~MErFK~vE 95 (885)
.|++.|+++.....-.| ...++..|.+|++||++..+..+.=+..-+-++ + ..|+.|..+||..|..+....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~~i~~~~~~~~~~~~~~~~~r~~g~ll~an~~~i~~~~~~v~~~~ 344 (564)
T COG1293 266 LFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKSVRLAD 344 (564)
T ss_pred HHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhehhh
Confidence 59999999888877665 334777777777777665555554444333333 1 166667777777666554433
No 86
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.74 E-value=1.4e+02 Score=35.99 Aligned_cols=59 Identities=19% Similarity=0.387 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhhH-HHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 002752 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKK-ALVDARKLIEREMERFKICEKETKTKAFSKEGL 108 (885)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~dIKDK~-~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL 108 (885)
++-++|+.|+...++...-+.+-++++-. .+.+--..|+.- |-.+|||.+.|.|...-+
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~L---yd~lekE~~A~~~vek~~ 312 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQL---YDILEREVKARKYVEKNS 312 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 35566666666666655566666666533 333333333332 334677777777765444
No 87
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.39 E-value=72 Score=41.92 Aligned_cols=83 Identities=20% Similarity=0.247 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhccccCC------CCchhhHHHHHHHHHHHHHHHHHHHHHHhhh---------CCCC
Q 002752 126 DWLNNLVSELESQIDSFEAELEGLTVKKGK------TRPPRLTHLETSITRHKAHIMKLELILRLLD---------NDEL 190 (885)
Q Consensus 126 ~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K------~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~---------N~~l 190 (885)
+=+...+.++..+++.++.+++.+...... .....+..|+.-.+.|.-++.++..+++-|. ++.+
T Consensus 308 ~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1311)
T TIGR00606 308 HNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPF 387 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCccc
Confidence 333444566666666666666666321110 1122455566667778888888888877443 3335
Q ss_pred ChhhhhhhhhHHHHHHHh
Q 002752 191 SPEQVNDVKDLLEDYVER 208 (885)
Q Consensus 191 dpe~V~~IKddIeyYVE~ 208 (885)
+..+|.++.+.|+..+..
T Consensus 388 ~~~~~~~~~~~~~~~~~~ 405 (1311)
T TIGR00606 388 SERQIKNFHTLVIERQED 405 (1311)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 566788887777776653
No 88
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=78.65 E-value=69 Score=34.14 Aligned_cols=58 Identities=31% Similarity=0.454 Sum_probs=36.1
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Q 002752 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARK 82 (885)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK 82 (885)
++|||+.|. +|+.-.|+.|++.=.++ .+.+ .||++++|-|| .+++-=|
T Consensus 16 ~n~~L~~en----~kL~~~ve~~ee~na~L--------~~e~-~~L~~q~~s~Q-------------------qal~~aK 63 (193)
T PF14662_consen 16 NNQKLADEN----AKLQRSVETAEEGNAQL--------AEEI-TDLRKQLKSLQ-------------------QALQKAK 63 (193)
T ss_pred HhHHHHHHH----HHHHHHHHHHHHHHHHH--------HHHH-HHHHHHHHHHH-------------------HHHHHHH
Confidence 457888875 45667778888765555 2222 25666666665 4555556
Q ss_pred HHHHHHHHHH
Q 002752 83 LIEREMERFK 92 (885)
Q Consensus 83 ~IE~~MErFK 92 (885)
.|+...|..|
T Consensus 64 ~l~eEledLk 73 (193)
T PF14662_consen 64 ALEEELEDLK 73 (193)
T ss_pred HHHHHHHHHH
Confidence 6777666644
No 89
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.39 E-value=40 Score=35.82 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=39.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHH---HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHH-HHhhhccccchhhHHHHHH
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIW---NKVYDTDNANQKEKFEADLKKEIKKLQRYRDQ-IKTWIQSSEIKDKKALVDA 80 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iy---eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQ-IKtW~~s~dIKDK~~L~e~ 80 (885)
+||...+..+.+|-++-.+..+++- .-+-+++|.+-+..|.+=- ..+.|+|-||+- +..- +-|=-.+|-+|
T Consensus 21 ~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~la-e~~~~i~d~~q~qv~~l----~~~v~epLk~Y 95 (211)
T cd07598 21 GELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFA-ECLAALQDYRQAEVERL----EAKVVQPLALY 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4556666666666555444444433 3333555555555554322 555555555531 1100 00111255556
Q ss_pred HHHHHHHHHHHH
Q 002752 81 RKLIEREMERFK 92 (885)
Q Consensus 81 RK~IE~~MErFK 92 (885)
-.+|=..|+.||
T Consensus 96 ~~l~k~~k~~~K 107 (211)
T cd07598 96 GTICKHARDDLK 107 (211)
T ss_pred HHHHHHHHHHHH
Confidence 666666666665
No 90
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.17 E-value=86 Score=35.28 Aligned_cols=89 Identities=18% Similarity=0.333 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCChhh--HHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----------ch-hhH
Q 002752 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLKKEIKKLQRYRDQIKTWIQSSE-----------IK-DKK 75 (885)
Q Consensus 10 EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQ--KEKlE~DLKKEIKKLQR~RDQIKtW~~s~d-----------IK-DK~ 75 (885)
||...++++.+-++.-+..+.++..+.++-+ |.+||++...=+++--..|-.||.--..++ -. +|.
T Consensus 44 ~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrt 123 (297)
T KOG0810|consen 44 EIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRTRRT 123 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHHH
Confidence 4555555555555555555555556666555 788887765555544555555555433221 11 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 002752 76 ALVDARKLIEREMERFKICEKET 98 (885)
Q Consensus 76 ~L~e~RK~IE~~MErFK~vEKe~ 98 (885)
...-..|..+..|..|-.+....
T Consensus 124 q~~~~~kkf~~~M~~f~~~~~~~ 146 (297)
T KOG0810|consen 124 QTSALSKKLKELMNEFNRTQSKY 146 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555577777888776655443
No 91
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=78.01 E-value=11 Score=36.59 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 118 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 118 ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
|+...|+.++|..-|+.|+.+++.++.+++.+
T Consensus 89 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~ 120 (140)
T PRK03947 89 EKDLDEAIEILDKRKEELEKALEKLEEALQKL 120 (140)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999998775
No 92
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=77.52 E-value=11 Score=39.42 Aligned_cols=82 Identities=28% Similarity=0.413 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHH-Hhhh---CCCCChhh---hh
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELIL-RLLD---NDELSPEQ---VN 196 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lL-RlL~---N~~ldpe~---V~ 196 (885)
..+.....++.++.+++.+|.++.. ...+..-.++-.++..+-+.+..+..+..++ +++. ...++.+. +.
T Consensus 119 ~~~~~~~~l~~l~~~l~~le~~~~~---~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 195 (292)
T PF01544_consen 119 IVDDYFEVLEELEDELDELEDELDD---RPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLR 195 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTH---TTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc---ccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 3344444555555555555555410 1111224578888888888888888887777 8887 44455554 67
Q ss_pred hhhhHHHHHHHh
Q 002752 197 DVKDLLEDYVER 208 (885)
Q Consensus 197 ~IKddIeyYVE~ 208 (885)
++.++++...+.
T Consensus 196 ~~~~~~~~~~~~ 207 (292)
T PF01544_consen 196 DLLDRIERLLER 207 (292)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776653
No 93
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=77.41 E-value=12 Score=39.67 Aligned_cols=45 Identities=22% Similarity=0.371 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHH---HHHHHHHHHHHHHHHH
Q 002752 13 RVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFE---ADLKKEIKKLQRYRDQ 61 (885)
Q Consensus 13 r~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE---~DLKKEIKKLQR~RDQ 61 (885)
|.|..++++|..-++.++... ++=|+||. .+|.+|+|+-+++-|-
T Consensus 19 r~L~~L~~dl~~~~~~~~~~e----~~~~~KY~~lR~ElI~ELkqsKklydn 66 (196)
T PF15272_consen 19 RALSDLNQDLRERDERYELQE----TSYKEKYQQLRQELINELKQSKKLYDN 66 (196)
T ss_pred HHHHHHHHHHHHhhhHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888877777766664 44577765 4888888888776653
No 94
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=77.40 E-value=25 Score=33.91 Aligned_cols=95 Identities=18% Similarity=0.244 Sum_probs=59.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCC--hhhHHHHHHH----------HHHHHHHHHHHHHHHHhhhccccchh-
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN--ANQKEKFEAD----------LKKEIKKLQRYRDQIKTWIQSSEIKD- 73 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n--~nQKEKlE~D----------LKKEIKKLQR~RDQIKtW~~s~dIKD- 73 (885)
+=++|...+.+|+.-|..++..+..+..+.. ..-|++|+.- +|+.||+|.+.-+..+.=-.+.+..-
T Consensus 7 ~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~ 86 (151)
T cd00179 7 EVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIR 86 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHH
Confidence 4468999999999999999999999998876 3346666653 33333333322111000001112332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002752 74 KKALVDARKLIEREMERFKICEKETKTK 101 (885)
Q Consensus 74 K~~L~e~RK~IE~~MErFK~vEKe~KtK 101 (885)
+....-.++.+-..|.+|..++++.|.+
T Consensus 87 ~~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 114 (151)
T cd00179 87 KTQHSGLSKKFVEVMTEFNKAQRKYRER 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344556777888999999999888743
No 95
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=77.19 E-value=1.1e+02 Score=38.46 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 002752 161 LTHLETSITRHKAHIMKLELILRL 184 (885)
Q Consensus 161 ~~~le~~ieRhk~Hi~kLE~lLRl 184 (885)
+.+++..++..+-.+..|+.-++.
T Consensus 435 ~~~~~~~~~~~~~~~~~l~~~~~~ 458 (1179)
T TIGR02168 435 LKELQAELEELEEELEELQEELER 458 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 96
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.09 E-value=1.3e+02 Score=33.83 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHH
Q 002752 160 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 205 (885)
Q Consensus 160 r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyY 205 (885)
+|++....+...+--|..+|.++. ++...+..+|..||+-++..
T Consensus 240 ~I~~~~~~k~e~~~~I~~ae~~~~--~~r~~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 240 KIEDLTNKKSELNTEIAEAEKKLE--QCRGFTFKEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHH
Confidence 344444555555555666666443 55667888888888877754
No 97
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.00 E-value=34 Score=44.76 Aligned_cols=11 Identities=9% Similarity=0.042 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 002752 15 LKKVQEGVDVF 25 (885)
Q Consensus 15 lKKV~EGve~F 25 (885)
|.++.+-++..
T Consensus 774 l~~~~~~~~~~ 784 (1311)
T TIGR00606 774 LGTIMPEEESA 784 (1311)
T ss_pred HHHHHHhHHHH
Confidence 33333333333
No 98
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=76.41 E-value=83 Score=34.15 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHH-----HHHHHHHHHHHHHHh
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSIT-----RHKAHIMKLELILRL 184 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ie-----Rhk~Hi~kLE~lLRl 184 (885)
+..=...+.-.|+.+|+.||.. |+.+|+..+. -..||-.-||.+-..
T Consensus 154 as~~~~rt~~~Lee~i~~FEkq--------------Kl~DlK~i~sdFv~iEM~fHaKALEv~T~a 205 (219)
T PF06730_consen 154 ASVDATRTTKQLEETIDNFEKQ--------------KLKDLKKIFSDFVTIEMVFHAKALEVYTAA 205 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333456778899999999876 4556666553 468999999988654
No 99
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=76.05 E-value=13 Score=37.32 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=51.3
Q ss_pred HHHHHHHHHhHHHHhhhhccccC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhhhhhhhHHHHHHH
Q 002752 132 VSELESQIDSFEAELEGLTVKKG-KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLEDYVE 207 (885)
Q Consensus 132 IdeL~~QiE~~EaEiE~L~~KK~-K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~--ldpe~V~~IKddIeyYVE 207 (885)
|.+|+.|+..++.++-.|...-. =......++|...|+..+--+..||.-|..|..+. ++++++..|....+.|..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRK 159 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 55666666665555555532111 12234556788888888888888888887777654 789999999999888864
No 100
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=75.74 E-value=99 Score=34.05 Aligned_cols=77 Identities=29% Similarity=0.472 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHH---------HHHHHHHHHHHHHHhhhcc-ccchhh---HH
Q 002752 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLK---------KEIKKLQRYRDQIKTWIQS-SEIKDK---KA 76 (885)
Q Consensus 10 EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLK---------KEIKKLQR~RDQIKtW~~s-~dIKDK---~~ 76 (885)
||+. |+...+-|+.|..--.++.......--+.+|.=|. -||..|.+..+|.+ |+.. .++-.. -.
T Consensus 104 Ei~~-L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l~~~~-W~~~~~~~~~~~~~~t 181 (335)
T PF08429_consen 104 EIDQ-LKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRRLEQLE-WLEEAREILSDPDRLT 181 (335)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHHHHHHH-HHHHHHHHhccccCCc
Confidence 4544 56667778888888777776522222456666554 48888899888876 9876 222222 36
Q ss_pred HHHHHHHHHHHH
Q 002752 77 LVDARKLIEREM 88 (885)
Q Consensus 77 L~e~RK~IE~~M 88 (885)
|.+.|++|++..
T Consensus 182 L~~l~~Ll~~g~ 193 (335)
T PF08429_consen 182 LDELRELLDEGE 193 (335)
T ss_pred HHHHHHHHHhhh
Confidence 777777777554
No 101
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.74 E-value=33 Score=35.76 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHH----HHHHHHHHHHHHhhhC-CCCChhhhh
Q 002752 128 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH----KAHIMKLELILRLLDN-DELSPEQVN 196 (885)
Q Consensus 128 L~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRh----k~Hi~kLE~lLRlL~N-~~ldpe~V~ 196 (885)
+-.-+++|+.+++.++.|++.+ ++..++++++++..+.+. +..-.+++.|..-+.+ -.++..+|+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~~~----~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~~~~i~ 177 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELEKY----SENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGMDEEDIR 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCHHHHH
Confidence 4456788899999999998854 334556666665544332 3334445555554444 234555554
No 102
>PHA02562 46 endonuclease subunit; Provisional
Probab=75.29 E-value=1.1e+02 Score=35.68 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhHHHHhhhhcc
Q 002752 129 NNLVSELESQIDSFEAELEGLTV 151 (885)
Q Consensus 129 ~~~IdeL~~QiE~~EaEiE~L~~ 151 (885)
++.|+++..+...++.++++|..
T Consensus 350 ~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 350 KQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666777777777743
No 103
>PF13514 AAA_27: AAA domain
Probab=75.07 E-value=78 Score=40.87 Aligned_cols=60 Identities=13% Similarity=0.368 Sum_probs=37.6
Q ss_pred cchhhhHHHHHH------HHHHHHHHHHHHHHHhhcCCChh-hHHHHHHHHHHHHHHHHHHHHHHHh
Q 002752 5 RKLQGEIDRVLK------KVQEGVDVFDSIWNKVYDTDNAN-QKEKFEADLKKEIKKLQRYRDQIKT 64 (885)
Q Consensus 5 RKLQ~EIDr~lK------KV~EGve~Fd~iyeK~~~a~n~n-QKEKlE~DLKKEIKKLQR~RDQIKt 64 (885)
.+|.+|.|++|| +|+..+..|+++-.++....... +=..+...+..--.+++++|.+++.
T Consensus 133 ~~L~~ea~~Lfkprg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~ 199 (1111)
T PF13514_consen 133 KQLDKEADELFKPRGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKE 199 (1111)
T ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999987 58888888888888887666533 3333333343334444444444443
No 104
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=74.81 E-value=11 Score=46.28 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHH-HHHHHhhhcc
Q 002752 15 LKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY-RDQIKTWIQS 68 (885)
Q Consensus 15 lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~-RDQIKtW~~s 68 (885)
++++.+-+..+++.++++... -++.+.....|++++.+|+.. +++++.|..-
T Consensus 76 l~~le~~l~e~~~~~e~L~~~--~~~L~E~~~~L~~~~~~l~~~~~~~l~~~~~l 128 (759)
T PF01496_consen 76 LEELEEELRELNENLEKLEEE--LNELEEEKNVLEEEIEFLEELKLEELEPWKNL 128 (759)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 334444444455555555432 233344455688888888888 7888888765
No 105
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=74.63 E-value=31 Score=33.72 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=41.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhc---CCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYD---TDNANQKEKFEADLKKEIKKLQRYRDQIKTW 65 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~---a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW 65 (885)
++|+.+.++.-++++.=-..|+..++++.. .-+..++++++.+|.+....||+++.++..=
T Consensus 39 ~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 102 (158)
T PF03938_consen 39 AKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQ 102 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555666666666665 4467788999999999999999888888743
No 106
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host [].; PDB: 3DOA_A 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A.
Probab=74.54 E-value=1.3 Score=50.43 Aligned_cols=43 Identities=26% Similarity=0.435 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHH
Q 002752 160 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLE 203 (885)
Q Consensus 160 r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIe 203 (885)
+++.++..++..+-=+..||.++..|+.-+ +++++.+|++.++
T Consensus 395 k~~~~~~~i~~~~~el~~l~~~~~~l~~a~-~~~~l~~i~~el~ 437 (455)
T PF05833_consen 395 KIEKLEERIEEAEKELEYLESKLEQLEEAE-DLEELEEIREELE 437 (455)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 344555555555556666777776666433 4677777777663
No 107
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=74.12 E-value=1.2e+02 Score=36.88 Aligned_cols=9 Identities=33% Similarity=0.464 Sum_probs=5.7
Q ss_pred HHHHHHHHH
Q 002752 172 KAHIMKLEL 180 (885)
Q Consensus 172 k~Hi~kLE~ 180 (885)
..|..+||.
T Consensus 326 eLh~aRLe~ 334 (546)
T PF07888_consen 326 ELHQARLEA 334 (546)
T ss_pred HHHHhhhhH
Confidence 467777753
No 108
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=74.09 E-value=44 Score=43.54 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~ 69 (885)
-+.|.+++++.|.|....=.++++|-+.+--+. +..-+.+.+-++.|+.|=.||+.++...
T Consensus 1427 ~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a--~as~~q~~~s~~el~~Li~~v~~Flt~~ 1487 (1758)
T KOG0994|consen 1427 KLAEAEQTLSMVREAKLSASEAQQSAQRALEQA--NASRSQMEESNRELRNLIQQVRDFLTQP 1487 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 457899999999999999998888877553221 1222334456778888888999998763
No 109
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=73.81 E-value=15 Score=45.56 Aligned_cols=169 Identities=15% Similarity=0.262 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHH---------HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccchhhHHHHHH
Q 002752 12 DRVLKKVQEGVDV---------FDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS--SEIKDKKALVDA 80 (885)
Q Consensus 12 Dr~lKKV~EGve~---------Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s--~dIKDK~~L~e~ 80 (885)
|+.-+|+.+|++. -+.-|..+.. .+.|-|+.||+- -.+-+||+--=.-|-.|+.- .+|++.-++.--
T Consensus 54 ~~~~~kl~~~l~~~~~~~~l~~mn~~w~~l~k-ks~~ir~~lea~-~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd 131 (966)
T KOG4286|consen 54 DENSQKILRSLEGSDDAVLLQLMNFKWSELRK-KSLNIRSHLEAS-SDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGD 131 (966)
T ss_pred chHHHHHHHHhcCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCC
Confidence 3455666665543 2233444422 233446666653 23456666655666778865 334444444444
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccc----------------ccCC-CCCCCchHHHHHH-HHHHHHHHHHHHHHHHHhH
Q 002752 81 RKLIEREMERFKICEKETKTKAFSKE----------------GLGQ-QPKTDPKEKAKSE-TRDWLNNLVSELESQIDSF 142 (885)
Q Consensus 81 RK~IE~~MErFK~vEKe~KtKafSkE----------------GL~~-~~k~DP~ekeK~E-~~~wL~~~IdeL~~QiE~~ 142 (885)
--.+-.+-+--|++-||.|+|.++-- ++.. +++.+-.++++.+ ...+|...-+++++.-|.+
T Consensus 132 ~~avq~q~~~~~a~~re~k~k~~~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l 211 (966)
T KOG4286|consen 132 FPAVQKQNDVHRAFKRELKTKEPVIMSTLETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKL 211 (966)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666788899999999999998642 2211 1111111222222 3333333334444444444
Q ss_pred HHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002752 143 EAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 183 (885)
Q Consensus 143 EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLR 183 (885)
.++.+.- .|+--+.-+|+.+|+..++....|+..-|.+.-
T Consensus 212 ~~~~~~w-~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~ 251 (966)
T KOG4286|consen 212 NLHSADW-QRKIDETLERLQELQEATDELDLKLRQAEVIKG 251 (966)
T ss_pred CcchhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhh
Confidence 4333322 122222336778888888888888877777654
No 110
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=73.65 E-value=1.6e+02 Score=36.54 Aligned_cols=95 Identities=24% Similarity=0.248 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHHH---HHHHHHHHHHHhHHHHhhhhc-cccCCCCchhhHHHHHHHHHHHH-HHHHHHHHHHhhhCCCC
Q 002752 116 PKEKAKSETRDWLN---NLVSELESQIDSFEAELEGLT-VKKGKTRPPRLTHLETSITRHKA-HIMKLELILRLLDNDEL 190 (885)
Q Consensus 116 P~ekeK~E~~~wL~---~~IdeL~~QiE~~EaEiE~L~-~KK~K~~~~r~~~le~~ieRhk~-Hi~kLE~lLRlL~N~~l 190 (885)
..||++.|+.+=+. +.|++++ |+---|-+-|.|+ .+|+|.....+..|++..+--+. -..-|+.+.+-|.-+..
T Consensus 192 alEkeq~e~E~K~R~se~l~qevn-~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e 270 (861)
T KOG1899|consen 192 ALEKEQNETEKKLRLSENLMQEVN-QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGE 270 (861)
T ss_pred HHHHHhhhHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhccc
Confidence 34667766655554 4566666 6655666667776 47777665667777776643333 33344555555544443
Q ss_pred -ChhhhhhhhhHHHHHHHhCCC
Q 002752 191 -SPEQVNDVKDLLEDYVERNQD 211 (885)
Q Consensus 191 -dpe~V~~IKddIeyYVE~nqd 211 (885)
-.++++.+|-.+|--+..|.+
T Consensus 271 ~~~~rd~~lk~a~eslm~ane~ 292 (861)
T KOG1899|consen 271 HKSLRDNTLKNALESLMRANEQ 292 (861)
T ss_pred chhhHHHHHHHHHHHHHhhchh
Confidence 377888999999999988865
No 111
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=73.40 E-value=62 Score=29.56 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 118 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 118 ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
+..+.++...+..++..|+..=+.+=.+++..
T Consensus 38 ~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~ 69 (127)
T smart00502 38 ADVEAQIKAAFDELRNALNKRKKQLLEDLEEQ 69 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444444444443
No 112
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=73.35 E-value=45 Score=35.16 Aligned_cols=92 Identities=22% Similarity=0.381 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHH----HHHHHHHHHHhhhccccchh---hH----H
Q 002752 8 QGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIK----KLQRYRDQIKTWIQSSEIKD---KK----A 76 (885)
Q Consensus 8 Q~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIK----KLQR~RDQIKtW~~s~dIKD---K~----~ 76 (885)
+.|+.+++-+.+|-|..+-.-+.+.... +.++++.|| .|+|.+|+|+....-.+-|+ .. .
T Consensus 56 e~~Lpqll~~h~eEvr~Lr~~LR~~q~~---------~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~k 126 (194)
T PF15619_consen 56 EAELPQLLQRHNEEVRVLRERLRKSQEQ---------ERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRK 126 (194)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 3566666777777777776666665433 345666666 68889999988665544332 11 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--cccccccccc
Q 002752 77 LVDARKLIEREMERFKICEKET--KTKAFSKEGL 108 (885)
Q Consensus 77 L~e~RK~IE~~MErFK~vEKe~--KtKafSkEGL 108 (885)
|.+....++..=++-+.+||.. =+|.|+.+-.
T Consensus 127 L~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~ 160 (194)
T PF15619_consen 127 LSQLEQKLQEKEKKIQELEKQLELENKSFRRQLA 160 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5555555555555666666632 2455555444
No 113
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=73.21 E-value=12 Score=45.09 Aligned_cols=127 Identities=20% Similarity=0.318 Sum_probs=43.0
Q ss_pred ccchhhhHHHHHHHHHHHH--------HHHHHHHHHhhcCCChhhH----------HHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 4 SRKLQGEIDRVLKKVQEGV--------DVFDSIWNKVYDTDNANQK----------EKFEADLKKEIKKLQRYRDQIKTW 65 (885)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGv--------e~Fd~iyeK~~~a~n~nQK----------EKlE~DLKKEIKKLQR~RDQIKtW 65 (885)
...|+.|++||-..-.+-+ ..-+++|++++-+....+. |-+=..+..||++|..+.+.-|.-
T Consensus 266 i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk~~~~~~k~I 345 (619)
T PF03999_consen 266 IEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLKEEYESRKPI 345 (619)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888865444444 4458889998854332221 223344678888888777665533
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002752 66 IQSSEIKDKKALVDARKLIEREMERFKICEKETKTK-AFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEA 144 (885)
Q Consensus 66 ~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtK-afSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~Ea 144 (885)
+ .|++.|+. -.+.+..+|..+|=. -|.+-|- .+=.+||.|..+..=|=.++++|...|+.+|.
T Consensus 346 l---------~~v~k~~~---l~~~~~~Le~~~~D~~Rl~~RGg----~LLkEEk~rk~i~k~lPkle~~L~~~l~~wE~ 409 (619)
T PF03999_consen 346 L---------ELVEKWES---LWEEMEELEESSKDPSRLNNRGG----HLLKEEKERKRIQKKLPKLEEELKKKLEEWEE 409 (619)
T ss_dssp H---------HHHHHHHH---HHHHHHHHHHHHH-CCGG----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------HHHHHHHH---HHHHHHHHHHHhcChhhhccccc----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3 23333333 333444455444322 2444341 12225677777888899999999999999998
Q ss_pred Hh
Q 002752 145 EL 146 (885)
Q Consensus 145 Ei 146 (885)
|-
T Consensus 410 e~ 411 (619)
T PF03999_consen 410 EH 411 (619)
T ss_dssp HH
T ss_pred Hc
Confidence 83
No 114
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=72.91 E-value=12 Score=46.19 Aligned_cols=132 Identities=21% Similarity=0.324 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHhhhccc-------cch-hhHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccccCCCCCCCchHHHH
Q 002752 51 EIKKLQRYRDQIKTWIQSS-------EIK-DKKALVDARKLIEREMERFKICEKETKTK-AFSKEGLGQQPKTDPKEKAK 121 (885)
Q Consensus 51 EIKKLQR~RDQIKtW~~s~-------dIK-DK~~L~e~RK~IE~~MErFK~vEKe~KtK-afSkEGL~~~~k~DP~ekeK 121 (885)
...|+||+-+-+..++..- +-. --..+...|--||+.+-.|-.-|..-+.. .++||||.+-.|+-|.---
T Consensus 807 DvQK~QRlh~~FsqFvg~HLavAF~~dPE~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~l- 885 (1480)
T COG3096 807 DVQKTQRLHQAFSRFIGSHLAVAFEADPEAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNL- 885 (1480)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhcc-
Confidence 3578999999998887651 111 12367788899999999998888776653 5678887665555552110
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhH
Q 002752 122 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDL 201 (885)
Q Consensus 122 ~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKdd 201 (885)
=+.+-|.+-|++++.+++.. ++.+.+|..|--.+.+||-|.-.|+. ||++.+.+|++
T Consensus 886 -l~dE~L~dRveE~~E~L~~a-------------------~e~~~fI~qhG~tls~LEpia~~Lqs---DPe~~e~L~~~ 942 (1480)
T COG3096 886 -LADESLADRVEEIRERLDEA-------------------QEAARFIQQHGNTLSKLEPIASVLQS---DPEQFEQLKED 942 (1480)
T ss_pred -ccchhHHHHHHHHHHHHHHH-------------------HHHHHHHHHhcchHHhhhhHHHHHhC---CHHHHHHHHHH
Confidence 01122334455555544433 34567999999999999999999986 69999999988
Q ss_pred HHHHH
Q 002752 202 LEDYV 206 (885)
Q Consensus 202 IeyYV 206 (885)
..--+
T Consensus 943 y~qA~ 947 (1480)
T COG3096 943 YAQAQ 947 (1480)
T ss_pred HHHHH
Confidence 65443
No 115
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=72.70 E-value=65 Score=40.51 Aligned_cols=40 Identities=35% Similarity=0.465 Sum_probs=28.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHH
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR 57 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR 57 (885)
.|-|.||||+++.|.+-...=+ .|||==++|.|+++|.++
T Consensus 565 ~kaq~EVERLl~~L~~~E~EK~-------------~ke~ki~~LekeLek~~~ 604 (775)
T PF10174_consen 565 EKAQAEVERLLDILREAENEKN-------------DKEKKIGELEKELEKAQM 604 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHhcc
Confidence 4667888888887776654433 467777888888777654
No 116
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=72.50 E-value=65 Score=37.96 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=12.6
Q ss_pred ccchhhhHHHHHHHHHHH
Q 002752 4 SRKLQGEIDRVLKKVQEG 21 (885)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EG 21 (885)
.+|.-+|+-|+|++..--
T Consensus 72 kcki~qeenr~l~~Asv~ 89 (552)
T KOG2129|consen 72 KCKIMQEENRPLLLASVE 89 (552)
T ss_pred HHHHHHhcCchhhhhhhH
Confidence 467778888888775433
No 117
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.49 E-value=81 Score=38.26 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHH
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEA 46 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~ 46 (885)
.+.++..+++++.+=-+..+.|-+|+..+....+-++|+.
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e 428 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLE 428 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 3455666666666666666666666665554444334433
No 118
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=71.33 E-value=34 Score=36.91 Aligned_cols=78 Identities=22% Similarity=0.155 Sum_probs=52.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHh----------hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKV----------YDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~----------~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK 74 (885)
+|+|+=....+|+|..--..|+.-+.+. ....+..|.||++.-|+|...-+++.++.-+.-+.
T Consensus 109 eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK~~~K~~k~~~~~~~a~~~Y~~~v~------- 181 (242)
T cd07671 109 ERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEKSQNKAKQCRDAATEAERVYKQNIE------- 181 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3455555556677777777787665443 33445566788888888877777777665544332
Q ss_pred HHHHHHHHHHHHHHHH
Q 002752 75 KALVDARKLIEREMER 90 (885)
Q Consensus 75 ~~L~e~RK~IE~~MEr 90 (885)
.|.+.|-.-|+.|+.
T Consensus 182 -~l~~~~~~w~~~~~~ 196 (242)
T cd07671 182 -QLDKARTEWETEHIL 196 (242)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 478888888888865
No 119
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=70.93 E-value=56 Score=40.55 Aligned_cols=50 Identities=30% Similarity=0.328 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHH
Q 002752 41 KEKFEADLKKEIKKL-------QRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERF 91 (885)
Q Consensus 41 KEKlE~DLKKEIKKL-------QR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErF 91 (885)
..|||.|+||==--| |.||.||-...+ +|---|..|...|+..|+-.-++
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~-~Er~lk~eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTN-NERSLKSELSQLRQENEQLQNKL 476 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHH
Confidence 456777666522222 467777775544 56667777888887777655544
No 120
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=70.77 E-value=1.1e+02 Score=33.56 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002752 11 IDRVLKKVQEGVDVFDS 27 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~ 27 (885)
.=.+.|||.+....||.
T Consensus 86 ~gea~~kla~a~~~~d~ 102 (248)
T cd07619 86 CGETEDKLAQELILFEL 102 (248)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456777777777765
No 121
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=70.68 E-value=2.3e+02 Score=33.70 Aligned_cols=124 Identities=23% Similarity=0.260 Sum_probs=63.8
Q ss_pred ccccchhh-HHHHHHHHHHHHHHHHHHHHHh---hhc--cccccccccCCCCCCCc------hHHHHHHHHHHHHHHHHH
Q 002752 67 QSSEIKDK-KALVDARKLIEREMERFKICEK---ETK--TKAFSKEGLGQQPKTDP------KEKAKSETRDWLNNLVSE 134 (885)
Q Consensus 67 ~s~dIKDK-~~L~e~RK~IE~~MErFK~vEK---e~K--tKafSkEGL~~~~k~DP------~ekeK~E~~~wL~~~Ide 134 (885)
...|+... +.|.-.-+.+|.+|..||.... ..| ..+.=|+|... ...|. .+.- ..-++.+++-|..
T Consensus 215 ~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~-~~~~~~~~~~el~~l-~~E~~~~~ee~~~ 292 (511)
T PF09787_consen 215 ESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE-EGFDSSTNSIELEEL-KQERDHLQEEIQL 292 (511)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc-cccccccchhcchhh-HHHHHHHHHHHHH
Confidence 33444433 2444455667889999995421 111 12222221111 11121 2222 3345678888999
Q ss_pred HHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHH
Q 002752 135 LESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 206 (885)
Q Consensus 135 L~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYV 206 (885)
|+.||+.+.+|+..+. .++....+.++-|+..|+..+..+-.- -+++.-...++.+|-
T Consensus 293 l~~Qi~~l~~e~~d~e-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~---e~e~~l~~~el~~~~ 350 (511)
T PF09787_consen 293 LERQIEQLRAELQDLE-----------AQLEGEQESFREQPQELSQQLEPELTT---EAELRLYYQELYHYR 350 (511)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHH
Confidence 9999999998875542 233344455556666666555443322 334444444554444
No 122
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=70.54 E-value=1e+02 Score=40.78 Aligned_cols=62 Identities=21% Similarity=0.287 Sum_probs=41.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (885)
++||.||..+-.+|.|-.+-|-..-..++.+-.. +|+++++=-.+++=.|..|.+|..|.+.
T Consensus 888 ~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~--~e~~k~~~~~~~~~aqk~~~~ine~~s~ 949 (1294)
T KOG0962|consen 888 EELSEEITRLDSKVKELLERIQPLKVELEEAQSE--KEELKNERNTSEKLAQKKRNDINEKVSL 949 (1294)
T ss_pred HHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888876655544433222 3333333222678889999999988764
No 123
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=70.30 E-value=68 Score=34.70 Aligned_cols=53 Identities=19% Similarity=0.324 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKE 97 (885)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe 97 (885)
+++...+-..|+.+|++|.++|+-.|. +-|.....-+|+.-..+-+||.||+.
T Consensus 73 a~~H~~ia~~L~~~~~~l~~f~~~qke-------~rK~~e~~~eK~qk~~~~~~k~l~ks 125 (242)
T cd07671 73 GNSHIQLAGMLREELKSLEEFRERQKE-------QRKKYEAVMERVQKSKVSLYKKTMES 125 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888887776554 12222233333333444466667663
No 124
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=70.25 E-value=1.7e+02 Score=34.51 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCC----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDN----------------------ANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n----------------------~nQKEKlE~DLKKEIKKLQR~RDQIKtW~ 66 (885)
.|||+.|++|.+-+......+.+++.+-+ .=-++--|.+|.||.-=+...+.++|--+
T Consensus 87 ~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~~ 166 (421)
T KOG2685|consen 87 GELDRELEDLAAEIDDLLHEKRRLERALNALALPLSIAEECLAHREKRQGIDLVHDEVETELHKEVELIENIQELLKKTL 166 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcccchhhccccHHHHHhHHHHHHHHHHHHHHHH
Confidence 69999999999999999999888873322 11245578899999888888888877554
Q ss_pred ccccchhhHHHHHHHHHHHHHH
Q 002752 67 QSSEIKDKKALVDARKLIEREM 88 (885)
Q Consensus 67 ~s~dIKDK~~L~e~RK~IE~~M 88 (885)
.--+.+ -..+.++|+.+|...
T Consensus 167 ~~a~~Q-l~~nr~ar~~Le~Dl 187 (421)
T KOG2685|consen 167 ERAEEQ-LRLNREARQNLERDL 187 (421)
T ss_pred HHHHHH-HHHhHHHHHHHhhhh
Confidence 322111 124566777776654
No 125
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=70.22 E-value=3.8e+02 Score=36.30 Aligned_cols=110 Identities=25% Similarity=0.315 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchH
Q 002752 40 QKEKFEADLKKEIKKLQRYRDQIKTWIQSS-EIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKE 118 (885)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIKtW~~s~-dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~e 118 (885)
.|+.+-..|.+++.+|.-.-.=|+.++... .|..+++-.-...|.+....+|+...+..+.+....+....... +..+
T Consensus 996 R~~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~~~k~~l~~~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 1074 (1388)
T PTZ00108 996 RKEYLLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEED-DEAD 1074 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEccCCHHHHHHHHHHcCCCccchhhhhcccccccccccccccc-cccc
Confidence 355666677777777776666666666542 23332211111223333445555544333333332222222111 1111
Q ss_pred HHH-------HHHHHHH---------HHHHHHHHHHHHhHHHHhhhhc
Q 002752 119 KAK-------SETRDWL---------NNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 119 keK-------~E~~~wL---------~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
.+- ...-+|| .+-|+.|.+|++..+.|++.|.
T Consensus 1075 ~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~e~~~~~~e~~~L~ 1122 (1388)
T PTZ00108 1075 DEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELEKLK 1122 (1388)
T ss_pred cccccccccchhhhHHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0135566 5689999999999999999994
No 126
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.20 E-value=2.9e+02 Score=34.55 Aligned_cols=201 Identities=19% Similarity=0.250 Sum_probs=119.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhh---------------cCCC--------------hhhHHHHHHHHHHHHHHH
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVY---------------DTDN--------------ANQKEKFEADLKKEIKKL 55 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~---------------~a~n--------------~nQKEKlE~DLKKEIKKL 55 (885)
+-||.|...=|+||.+=+..-..+++-|- +..+ +...++|+++=++-+.||
T Consensus 170 ~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl 249 (660)
T KOG4302|consen 170 NELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKL 249 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999988877666655433 2222 345778888889999999
Q ss_pred HHHHHHHHhhhccccchhh----------------HH-HHHHHHHHHHHHHHHHHHHhhhcccccc--cc----ccCCCC
Q 002752 56 QRYRDQIKTWIQSSEIKDK----------------KA-LVDARKLIEREMERFKICEKETKTKAFS--KE----GLGQQP 112 (885)
Q Consensus 56 QR~RDQIKtW~~s~dIKDK----------------~~-L~e~RK~IE~~MErFK~vEKe~KtKafS--kE----GL~~~~ 112 (885)
|-+|++|-..-+.-++-+- .. =.|..+.+|.+|+|+-.+ |..++|.|= +. -|-...
T Consensus 250 ~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~ql-K~s~mKeli~k~r~Eleel~~~~ 328 (660)
T KOG4302|consen 250 QDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQL-KASNMKELIEKKRSELEELWRLL 328 (660)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999887666555432 11 146677788998886555 333444431 10 000000
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccC-----CCC-c------hhhHHHHHHHH-----------
Q 002752 113 KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG-----KTR-P------PRLTHLETSIT----------- 169 (885)
Q Consensus 113 k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~-----K~~-~------~r~~~le~~ie----------- 169 (885)
-+ +.+-...+.|+..+||.-..++..+=+.+|.+..|-+ ++. - .+..+.+.+++
T Consensus 329 h~---s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~lee~n~D~nR~~~ 405 (660)
T KOG4302|consen 329 HY---SEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEESWLEEYNRDSNRYNA 405 (660)
T ss_pred hc---cccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccchhhhHhc
Confidence 00 1112345566777777666665333333555422100 110 0 12333344443
Q ss_pred HHHHH-HHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCC
Q 002752 170 RHKAH-IMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD 211 (885)
Q Consensus 170 Rhk~H-i~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~nqd 211 (885)
+|.-| +-|=|...|.+-+- -|.-|+.|..-|..|-+.++-
T Consensus 406 ~Rg~h~lLkreekar~~vsK--lP~~~~~L~~k~~~wE~e~~~ 446 (660)
T KOG4302|consen 406 GRGAHLLLKREEKARKLVSK--LPKMVEALTAKVTAWEEEKGR 446 (660)
T ss_pred cccchhHHHHHHHHHHHhhh--CchhhHHHHHHHHHHHHhcCC
Confidence 25567 66777777777776 488899999999999876665
No 127
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=70.07 E-value=27 Score=41.51 Aligned_cols=124 Identities=18% Similarity=0.228 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHhhhhc-
Q 002752 82 KLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDS----------FEAELEGLT- 150 (885)
Q Consensus 82 K~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~----------~EaEiE~L~- 150 (885)
|.+-..--.|-..++.||.|.=+--|++. ++.-.=.+|+|-.+-|+.-+|+|+.|++. ..+|-|+|-
T Consensus 305 r~l~~D~nk~~~~~~~mk~K~~~~~g~l~--kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~r 382 (622)
T COG5185 305 RALKSDSNKYENYVNAMKQKSQEWPGKLE--KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTR 382 (622)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33444455677778888888777777653 33333456778888999999999988542 334444442
Q ss_pred ------cccCC--------C--CchhhHHHHHHHHHHHHHHHHHHHH---HHhhhCCC---CChhhhh----hhhhHHHH
Q 002752 151 ------VKKGK--------T--RPPRLTHLETSITRHKAHIMKLELI---LRLLDNDE---LSPEQVN----DVKDLLED 204 (885)
Q Consensus 151 ------~KK~K--------~--~~~r~~~le~~ieRhk~Hi~kLE~l---LRlL~N~~---ldpe~V~----~IKddIey 204 (885)
.++-+ + -+.+++.|+..+...+--+.++=.. ++-=-||. +.+|... +|++-|..
T Consensus 383 eL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~ 462 (622)
T COG5185 383 ELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKK 462 (622)
T ss_pred HHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHH
Confidence 11110 0 1346666666666665555555444 44333442 3344433 35555555
Q ss_pred HHH
Q 002752 205 YVE 207 (885)
Q Consensus 205 YVE 207 (885)
+++
T Consensus 463 ~i~ 465 (622)
T COG5185 463 SIL 465 (622)
T ss_pred HHH
Confidence 553
No 128
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=70.03 E-value=76 Score=31.78 Aligned_cols=97 Identities=26% Similarity=0.420 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH-HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 19 QEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKE 97 (885)
Q Consensus 19 ~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe 97 (885)
.||-..|+.+-++= |++|.+-++.+++. -+.+|+++.- +.+.|..+...+.++-..--+
T Consensus 35 ~EG~k~F~~LVk~G---------e~~e~~~~~~~~e~~~~~~~~~~~~-----------~~~~~~~~~~~~dklE~~fd~ 94 (132)
T PF05597_consen 35 EEGSKVFEALVKEG---------EKLEKKTRKKAEEQVEEARDQVKSR-----------VDDVKERATGQWDKLEQAFDE 94 (132)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 56777777665543 55666666666543 3556666643 333333333333332111111
Q ss_pred hccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccc
Q 002752 98 TKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK 153 (885)
Q Consensus 98 ~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK 153 (885)
.=.++-.+-|+-. .+=|+.|+..|+.|+++++.|..||
T Consensus 95 rV~~aL~rLgvPs------------------~~dv~~L~~rId~L~~~v~~l~~~k 132 (132)
T PF05597_consen 95 RVARALNRLGVPS------------------RKDVEALSARIDQLTAQVERLANKK 132 (132)
T ss_pred HHHHHHHhcCCCC------------------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1123444445532 1247888888888888888886544
No 129
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=69.99 E-value=32 Score=39.84 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhhccccchhhH
Q 002752 52 IKKLQRYRDQIKTWIQSSEIKDKK 75 (885)
Q Consensus 52 IKKLQR~RDQIKtW~~s~dIKDK~ 75 (885)
|..-+++|.|||+|..+.|..+-.
T Consensus 152 ~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 152 IQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred HHHHHHHHHHHHHHhcCCchhhHH
Confidence 667799999999999998877654
No 130
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.92 E-value=23 Score=37.67 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Q 002752 8 QGEIDRVLKKVQEGVDVFDSIWNKV 32 (885)
Q Consensus 8 Q~EIDr~lKKV~EGve~Fd~iyeK~ 32 (885)
|.++++.+++|.|-+..|..+..-+
T Consensus 78 q~qv~~l~~~v~epLk~Y~~l~k~~ 102 (211)
T cd07598 78 QAEVERLEAKVVQPLALYGTICKHA 102 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999888433
No 131
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=69.72 E-value=22 Score=42.80 Aligned_cols=53 Identities=11% Similarity=0.334 Sum_probs=31.2
Q ss_pred HHhhh--ccccccccccCCCCC------CCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 002752 94 CEKET--KTKAFSKEGLGQQPK------TDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 146 (885)
Q Consensus 94 vEKe~--KtKafSkEGL~~~~k------~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEi 146 (885)
..+++ +..-|-+-.|..+-+ ......-|.|...|...-|.+++.+.+..-.+.
T Consensus 231 ~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~ 291 (546)
T KOG0977|consen 231 ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQ 291 (546)
T ss_pred HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchh
Confidence 44444 555566666643211 112235677888899999999887655544443
No 132
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.63 E-value=95 Score=39.20 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH---------------------HHhhhccccccccccCC-CCCCCchHHHHHHHHHHHHHH
Q 002752 74 KKALVDARKLIEREMERFKI---------------------CEKETKTKAFSKEGLGQ-QPKTDPKEKAKSETRDWLNNL 131 (885)
Q Consensus 74 K~~L~e~RK~IE~~MErFK~---------------------vEKe~KtKafSkEGL~~-~~k~DP~ekeK~E~~~wL~~~ 131 (885)
|..+.+.++.+|..|-.-+. ++-..|.|+++.-+-.. ...+..+-.+|+.+|.-|++.
T Consensus 471 kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdq 550 (1118)
T KOG1029|consen 471 KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQ 550 (1118)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777775533222 23345566665544432 222334456788899999999
Q ss_pred HHHHHHHHHhHHHHhhhhcc
Q 002752 132 VSELESQIDSFEAELEGLTV 151 (885)
Q Consensus 132 IdeL~~QiE~~EaEiE~L~~ 151 (885)
+++|.+.++.--.|++.+.+
T Consensus 551 ldelskE~esk~~eidi~n~ 570 (1118)
T KOG1029|consen 551 LDELSKETESKLNEIDIFNN 570 (1118)
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 99999999888888888753
No 133
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=69.51 E-value=76 Score=40.00 Aligned_cols=18 Identities=33% Similarity=0.661 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHHHHhhhh
Q 002752 132 VSELESQIDSFEAELEGL 149 (885)
Q Consensus 132 IdeL~~QiE~~EaEiE~L 149 (885)
+..+..+++.+..+++.+
T Consensus 690 ~~~~~~el~~~~~~l~~~ 707 (908)
T COG0419 690 LEQLEEELEQLREELEEL 707 (908)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555544
No 134
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=69.43 E-value=1.1e+02 Score=32.55 Aligned_cols=66 Identities=27% Similarity=0.354 Sum_probs=45.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccchhh-----HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002752 35 TDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS--SEIKDK-----KALVDARKLIEREMERFKICEKETKT 100 (885)
Q Consensus 35 a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s--~dIKDK-----~~L~e~RK~IE~~MErFK~vEKe~Kt 100 (885)
..|-..=-|.-++|.|-.|.|-.-|-.||.=+.. ++++++ ..+.+.+..|-.++..|-.-+|+.|.
T Consensus 38 ee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~k~ 110 (215)
T PF07083_consen 38 EENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKEEKR 110 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444467788888888888888888776655 344432 26777888888888777776666654
No 135
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.35 E-value=2.5e+02 Score=33.90 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002752 175 IMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 207 (885)
Q Consensus 175 i~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE 207 (885)
-..++.|...|+.-.|+.+.|...-+.+...|+
T Consensus 450 ~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~ 482 (560)
T PF06160_consen 450 SDEIEELSDELNQVPINMDEVNKQLEEAEDDVE 482 (560)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHH
Confidence 356788888899999998888875555555554
No 136
>PRK11637 AmiB activator; Provisional
Probab=69.11 E-value=91 Score=35.85 Aligned_cols=19 Identities=0% Similarity=-0.043 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002752 76 ALVDARKLIEREMERFKIC 94 (885)
Q Consensus 76 ~L~e~RK~IE~~MErFK~v 94 (885)
.|.+.++.|+.+-+.|+..
T Consensus 111 eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 111 SIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666555544
No 137
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.65 E-value=82 Score=40.65 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhccccch----------hhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHH
Q 002752 54 KLQRYRDQIKTWIQSSEIK----------DKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE 123 (885)
Q Consensus 54 KLQR~RDQIKtW~~s~dIK----------DK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E 123 (885)
|-+++=+-+-+=++++|-. -|..|-+.+.-|+..==+|.-|++|.|.+.-...-...
T Consensus 375 ~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~------------- 441 (1174)
T KOG0933|consen 375 KAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASA------------- 441 (1174)
T ss_pred HHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhH-------------
Confidence 3334444444555555542 25577788888888777888899999887544333321
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 187 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N 187 (885)
.+.-...-++.++..||.+++.+.+|.-+ ..+.+.|+.......-|+.+|..-++.|.+
T Consensus 442 ~~~~~~~~ld~~q~eve~l~~~l~~l~~~-----~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a 500 (1174)
T KOG0933|consen 442 EYVKDIEELDALQNEVEKLKKRLQSLGYK-----IGQEEALKQRRAKLHEDIGRLKDELDRLLA 500 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11122234555555555555555555322 123344555555555556555544444433
No 138
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.58 E-value=1.3e+02 Score=32.01 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=10.7
Q ss_pred chhhhHHHHHHHHHHHHH
Q 002752 6 KLQGEIDRVLKKVQEGVD 23 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve 23 (885)
+++.+.+++-.+|.+-++
T Consensus 31 ~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 31 QLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666666665
No 139
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=68.43 E-value=2.2e+02 Score=32.55 Aligned_cols=66 Identities=21% Similarity=0.342 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhHHHHhhhhcc-c----------cC-------------CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002752 131 LVSELESQIDSFEAELEGLTV-K----------KG-------------KTRPPRLTHLETSITRHKAHIMKLELILRLLD 186 (885)
Q Consensus 131 ~IdeL~~QiE~~EaEiE~L~~-K----------K~-------------K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~ 186 (885)
.++.++.|++.+|.|+-.+-- | |. .....||.+++..|.-+||--.+|..+
T Consensus 134 qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~----- 208 (319)
T PF09789_consen 134 QLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQL----- 208 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHH-----
Confidence 458888888888888865510 0 00 111235556666665555555555544
Q ss_pred CCCCChhhhhhhhhHHHHHH
Q 002752 187 NDELSPEQVNDVKDLLEDYV 206 (885)
Q Consensus 187 N~~ldpe~V~~IKddIeyYV 206 (885)
-++++-+|--|..|-
T Consensus 209 -----qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 209 -----QEEKELLKQTINKYK 223 (319)
T ss_pred -----HHHHHHHHHHHHHHH
Confidence 245555666666665
No 140
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.13 E-value=1.3e+02 Score=36.82 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
...=+..+|+++++-+..++.|+-.+
T Consensus 447 ~~~~~~~~i~E~~~~l~~~~~el~~~ 472 (581)
T KOG0995|consen 447 HFSNKASTIEEKIQILGEIELELKKA 472 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444
No 141
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=67.28 E-value=70 Score=39.72 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 002752 47 DLKKEIKKLQRYRDQIKTWI 66 (885)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~ 66 (885)
-||-||--||+--|++.+=+
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKL 476 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555433
No 142
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=67.03 E-value=18 Score=34.50 Aligned_cols=32 Identities=31% Similarity=0.521 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 118 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 118 ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
|+...|+.++|..-|+.|+++++.++.++..+
T Consensus 81 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l 112 (126)
T TIGR00293 81 EKDAEEAIEFLKKRIEELEKAIEKLQEALAEL 112 (126)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999998776
No 143
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=66.88 E-value=47 Score=37.84 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002752 45 EADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTK 101 (885)
Q Consensus 45 E~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtK 101 (885)
-..+++++|+|+.+.+-||.-..+..-++++.+.+.++.|.++=-.|.++|.....|
T Consensus 38 ~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~LPkk 94 (330)
T PF07851_consen 38 SSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEAFLPKK 94 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHhhCCCC
Confidence 346777788888888888888776555777788888888888888899999666433
No 144
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=66.70 E-value=1.5e+02 Score=31.97 Aligned_cols=181 Identities=14% Similarity=0.164 Sum_probs=77.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHH-HHHHHHhhhcccc---chhhHHHHHHH
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR-YRDQIKTWIQSSE---IKDKKALVDAR 81 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR-~RDQIKtW~~s~d---IKDK~~L~e~R 81 (885)
+|.+|+|.+.+|+.--..--+.+......+-+.. .+|...|++|++ ..+-|+.|..-+. -=.-..|....
T Consensus 56 ~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a------~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l 129 (264)
T PF06008_consen 56 SLEQDVENLQEKATKVSRKAQQLNNNTERTLQRA------QDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRAL 129 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence 4555666666666655555555544443332211 245555555432 2344444433333 11112333333
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhh
Q 002752 82 KLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRL 161 (885)
Q Consensus 82 K~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~ 161 (885)
+-|+.=| ++|+.+.|...=-. .+.|+.++..-|..+-..+....+..+.=.+.+.. +-..-..++
T Consensus 130 ~ea~~mL-------~emr~r~f~~~~~~-------Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~-~L~~~~~kL 194 (264)
T PF06008_consen 130 AEAQRML-------EEMRKRDFTPQRQN-------AEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRD-DLNDYNAKL 194 (264)
T ss_pred HHHHHHH-------HHHHhccchhHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHH-HHHHHHHHH
Confidence 3333333 34555556544332 35666666665555555544433333332222210 001112345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCC----ChhhhhhhhhHHHHHHH
Q 002752 162 THLETSITRHKAHIMKLELILRLLDNDEL----SPEQVNDVKDLLEDYVE 207 (885)
Q Consensus 162 ~~le~~ieRhk~Hi~kLE~lLRlL~N~~l----dpe~V~~IKddIeyYVE 207 (885)
.+|+.++++=.-++..=+.+.+...+--- -.+.|.+.+..+..+|.
T Consensus 195 ~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~ 244 (264)
T PF06008_consen 195 QDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLK 244 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444444444333322211 13455555555555554
No 145
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=66.64 E-value=65 Score=39.85 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=20.1
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 002752 153 KGKTRPPRLTHLETSITRHKAHIMKLEL 180 (885)
Q Consensus 153 K~K~~~~r~~~le~~ieRhk~Hi~kLE~ 180 (885)
|+|....++++.+..+.||..-|.|+=.
T Consensus 353 rkK~e~ke~ea~E~rkkr~~aei~Kffq 380 (811)
T KOG4364|consen 353 RKKLESKEVEAQELRKKRHEAEIGKFFQ 380 (811)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhc
Confidence 4444455788888888999888887643
No 146
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.30 E-value=1.6e+02 Score=34.48 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 002752 158 PPRLTHLETSITRHKAHIMKLE 179 (885)
Q Consensus 158 ~~r~~~le~~ieRhk~Hi~kLE 179 (885)
.+|.-+|.+.||..+-+|.|||
T Consensus 297 ~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 297 YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999
No 147
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.28 E-value=2.3e+02 Score=32.06 Aligned_cols=80 Identities=15% Similarity=0.261 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHH
Q 002752 45 EADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSET 124 (885)
Q Consensus 45 E~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~ 124 (885)
-+.|++|+..|++..+.|.. .|..-|...|..|...-.. ++. ++. +-.++.+-
T Consensus 181 ~~~L~~e~~~L~~~~~e~~~-------~d~~eL~~lk~~l~~~~~e---i~~-~~~----------------~l~e~~~~ 233 (312)
T smart00787 181 KDALEEELRQLKQLEDELED-------CDPTELDRAKEKLKKLLQE---IMI-KVK----------------KLEELEEE 233 (312)
T ss_pred HHHHHHHHHHHHHhHHHHHh-------CCHHHHHHHHHHHHHHHHH---HHH-HHH----------------HHHHHHHH
Confidence 45688888888887776643 3455566665444433111 100 000 13445666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhcc
Q 002752 125 RDWLNNLVSELESQIDSFEAELEGLTV 151 (885)
Q Consensus 125 ~~wL~~~IdeL~~QiE~~EaEiE~L~~ 151 (885)
..+++..|++++.++..++.+|..+..
T Consensus 234 l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 234 LQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999998887754
No 148
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=66.20 E-value=1.7e+02 Score=31.43 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCC--hhhHHHHHHHHHHHH-HHHHHHHH
Q 002752 17 KVQEGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEI-KKLQRYRD 60 (885)
Q Consensus 17 KV~EGve~Fd~iyeK~~~a~n--~nQKEKlE~DLKKEI-KKLQR~RD 60 (885)
.+..+.-.|...|+.|..... +++.+.+-.-|..|| +.|..+++
T Consensus 52 ~~~~~~Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~ 98 (239)
T cd07658 52 ASKSVSGTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLD 98 (239)
T ss_pred hhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444466667776654332 344555555555444 44444444
No 149
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=66.18 E-value=1.6e+02 Score=32.63 Aligned_cols=41 Identities=15% Similarity=0.379 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHH
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR 57 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR 57 (885)
-++++|+|..|...=+++-+=|. +|-++|.+--|.+.+|-|
T Consensus 7 Y~~~vkR~~dG~~~C~el~~f~~------eRA~IE~~YAk~L~~lak 47 (258)
T cd07681 7 YRRTVKRIEDGYRLCNDLVSCFQ------ERAKIEKGYAQQLSDWAR 47 (258)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 47889999999888777766553 577777777777666654
No 150
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=66.14 E-value=1e+02 Score=40.54 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=6.1
Q ss_pred cchhhhHHHHHHH
Q 002752 5 RKLQGEIDRVLKK 17 (885)
Q Consensus 5 RKLQ~EIDr~lKK 17 (885)
+.||.|..|.-|+
T Consensus 1545 ~~L~s~A~~a~~~ 1557 (1758)
T KOG0994|consen 1545 ENLQSEAERARSR 1557 (1758)
T ss_pred HHHHHHHHHHHhH
Confidence 3455555444444
No 151
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=66.13 E-value=3e+02 Score=35.86 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002752 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS 69 (885)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~ 69 (885)
..|||++..++.+.|++--+.|.|-=.|+-..
T Consensus 705 ~~qkee~~~~~~~~I~~~~~~~~~~~~~~~~~ 736 (1072)
T KOG0979|consen 705 DRQEEEYAASEAKKILDTEDMRIQSIRWHLEL 736 (1072)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 66899999999999999999999988887653
No 152
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=65.51 E-value=55 Score=33.86 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHH
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMER 90 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MEr 90 (885)
|=.+.-.|-+=...|+.+|+.+..+-+...||++- +-|.+|| ++|..+...-+. .-..|.+.|..+...-..
T Consensus 75 ii~~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~----~~i~~L~---~~i~~~q~~~~~-~i~~L~~f~~~l~~D~~~ 146 (184)
T PF05791_consen 75 IIDLNQDIINYNTTFQSYYDTLVEAIDQKDKEDLK----EIIEDLQ---DQIQKNQDKVQA-LINELNDFKDKLQKDSRN 146 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHH----HHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHH----HHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33344444444455688888887776555555544 4444443 344433322110 112466666666666666
Q ss_pred HHHH
Q 002752 91 FKIC 94 (885)
Q Consensus 91 FK~v 94 (885)
||..
T Consensus 147 l~~~ 150 (184)
T PF05791_consen 147 LKTD 150 (184)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6544
No 153
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=65.41 E-value=1e+02 Score=37.36 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhhhhhhhHHHHH
Q 002752 163 HLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLEDY 205 (885)
Q Consensus 163 ~le~~ieRhk~Hi~kLE~lLRlL~N~~ld-pe~V~~IKddIeyY 205 (885)
.+++..+-|+--.+++....+.+.+++.+ ..++-+-|+++..+
T Consensus 440 ~~~el~~l~~~~~~n~~~a~~~l~~~D~~~ar~lv~~k~~~r~~ 483 (533)
T COG1283 440 GLEELDALFALTLENLRLAISVLVTGDLELARRLVERKKRVRRL 483 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34455566777788889999999988876 44555555555443
No 154
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=65.13 E-value=89 Score=38.09 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhhH
Q 002752 46 ADLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (885)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~ 75 (885)
..++.+|-.|+++|+-.|.|-++.++++-.
T Consensus 355 d~~~~~~~~~~~~~~sl~~~~~~E~~~~de 384 (607)
T KOG0240|consen 355 DKNVALKEELEKLRNSLKRWRNGEEVKEDE 384 (607)
T ss_pred hHHHHHHHHHHHHHHHHhhhcccCcccchh
Confidence 346778889999999999999999998543
No 155
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=65.11 E-value=64 Score=39.07 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhHHHHhhhhcccc-----CCC-CchhhHHHHHHHH-HHHHHHHHHHHHHHhhhCCCC
Q 002752 129 NNLVSELESQIDSFEAELEGLTVKK-----GKT-RPPRLTHLETSIT-RHKAHIMKLELILRLLDNDEL 190 (885)
Q Consensus 129 ~~~IdeL~~QiE~~EaEiE~L~~KK-----~K~-~~~r~~~le~~ie-Rhk~Hi~kLE~lLRlL~N~~l 190 (885)
.+-+..|..++..+..+|+.+..-+ .|. .+-++..|..-|+ .-.-|=..|+...+...-+..
T Consensus 168 e~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t 236 (546)
T KOG0977|consen 168 EDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT 236 (546)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc
Confidence 3344456677777777776652100 010 0123333332221 123344677777777776664
No 156
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=64.98 E-value=1.3e+02 Score=35.59 Aligned_cols=77 Identities=29% Similarity=0.501 Sum_probs=51.9
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHH------HHHHHHHHHHHHHHHHHhhhccccchhhHH
Q 002752 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEA------DLKKEIKKLQRYRDQIKTWIQSSEIKDKKA 76 (885)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~------DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~ 76 (885)
.+.||-.|-|++|.||.+-=++-|.+-.-|..-.-.--+-+||. .++||+||||.|=+..|-
T Consensus 211 ~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP------------ 278 (426)
T smart00806 211 SKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKP------------ 278 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh------------
Confidence 35688899999999999988888888777765544333444443 456777777766554442
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002752 77 LVDARKLIEREMERFKICE 95 (885)
Q Consensus 77 L~e~RK~IE~~MErFK~vE 95 (885)
-++|..|.+++. +||
T Consensus 279 --~WkKiWE~EL~~--VcE 293 (426)
T smart00806 279 --IWKKIWEAELDK--VCE 293 (426)
T ss_pred --HHHHHHHHHHHH--HHH
Confidence 245777777764 555
No 157
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=64.88 E-value=57 Score=33.35 Aligned_cols=124 Identities=18% Similarity=0.168 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHH-
Q 002752 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEK- 119 (885)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ek- 119 (885)
++|=+.+++-|++|.+.-.+.+-+=|. .|.++|..++..|.-+- .-|+.. .+-
T Consensus 14 ~~k~~e~a~~el~k~~~~~~~~~~qL~--------~l~~y~~ey~q~~~~k~------------~~G~s~------~q~~ 67 (148)
T COG2882 14 AKKEEEEAAIELSKIRSEKENAEEQLK--------MLSGYRNEYEQNLNEKL------------KSGVSA------AQWQ 67 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH------------hccccH------HHHH
Confidence 777788888888888888877755443 59999999999886531 123322 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 002752 120 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS 191 (885)
Q Consensus 120 eK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ld 191 (885)
--..-...|...|+....++..++..+|.... .--.+..|+..++.+.+||+.-....|.....-.||++.
T Consensus 68 nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~-~w~ek~~~~k~~e~L~er~~~e~~~~e~~~Eqk~mDE~a 138 (148)
T COG2882 68 NYQQFISQLEVAIDQQQSQLSKLRKQVEQKRE-IWQEKQIELKALEKLKERQKTEFLLEENRREQKIMDELA 138 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Confidence 23344555667777777777777777766421 001123355678888899988888888877766666653
No 158
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=64.05 E-value=1.3e+02 Score=32.41 Aligned_cols=30 Identities=10% Similarity=0.198 Sum_probs=24.3
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVY 33 (885)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~ 33 (885)
.+.|..+|+++-+.+.++......+..++.
T Consensus 79 ~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~ 108 (296)
T PF13949_consen 79 NASLRKELQKYREYLEQASESDSQLRSKLE 108 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 357788888888888888888888887776
No 159
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=64.02 E-value=1.3e+02 Score=34.32 Aligned_cols=135 Identities=21% Similarity=0.313 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccc-----ccccccCCCCCCC---chHH
Q 002752 48 LKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKA-----FSKEGLGQQPKTD---PKEK 119 (885)
Q Consensus 48 LKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKa-----fSkEGL~~~~k~D---P~ek 119 (885)
|-+|+-+-|.-|||.| .++|+=+|||..++|..+.-- |.+-++......- ..=.
T Consensus 14 L~~eLe~cq~ErDqyK------------------lMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~ 75 (319)
T PF09789_consen 14 LSQELEKCQSERDQYK------------------LMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLS 75 (319)
T ss_pred HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHH
Confidence 6678888888899877 456777778888877554333 2222332110000 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccc--c------C---CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002752 120 AKSETRDWLNNLVSELESQIDSFEAELEGLTVK--K------G---KTRPPRLTHLETSITRHKAHIMKLELILRLLDND 188 (885)
Q Consensus 120 eK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~K--K------~---K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~ 188 (885)
+-.|-..=|..-|++|+..+..+.-|+.-|..+ + + +......+.|-..+|+.+..+..||.=++.+
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~--- 152 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSL--- 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 112222334445555555555555555444321 1 0 0112345566667788889999999888876
Q ss_pred CCChhhhhhhhhHHHHHH
Q 002752 189 ELSPEQVNDVKDLLEDYV 206 (885)
Q Consensus 189 ~ldpe~V~~IKddIeyYV 206 (885)
.|+.+++.-+-++|-
T Consensus 153 ---lDEkeEl~~ERD~yk 167 (319)
T PF09789_consen 153 ---LDEKEELVTERDAYK 167 (319)
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 355556665556654
No 160
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=63.99 E-value=9.4 Score=44.17 Aligned_cols=136 Identities=14% Similarity=0.201 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC---------hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVYDTDN---------ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDAR 81 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~iyeK~~~a~n---------~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~R 81 (885)
||.++.+ |++..=+.||+++...-- .+==+++-.||++.|+| .+++.-
T Consensus 68 leni~~r--g~l~~n~~iw~~~~ew~y~~~~~~~v~s~~l~~f~~~~~~li~k---------------------~il~~f 124 (420)
T PTZ00473 68 LENIVRR--GDLKKNDDIWKDFVEWFYNKQEKFDVFSNHLESFNYDFEYLIQK---------------------NILKNF 124 (420)
T ss_pred HHHHhcc--ccccchhHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHH---------------------HhhhhH
Confidence 3444444 556566667766653322 22256777788887755 466677
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCC-CchHHHHHHHHHHHHHHHHHHHHHH-HhHHHHhhhhccccCCCC-c
Q 002752 82 KLIEREMERFKICEKETKTKAFSKEGLGQQPKT-DPKEKAKSETRDWLNNLVSELESQI-DSFEAELEGLTVKKGKTR-P 158 (885)
Q Consensus 82 K~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~-DP~ekeK~E~~~wL~~~IdeL~~Qi-E~~EaEiE~L~~KK~K~~-~ 158 (885)
+.++.--|.++++|..||.=-|+.-.-.-...+ .+........|+|+++|||.-++=| +.+... -+.... .
T Consensus 125 ~kfk~~~~~~~e~e~ImKL~yFteNig~Ik~lm~~~~~~~y~s~C~fvn~CidIYrk~i~~~Cs~~------~~~~~s~s 198 (420)
T PTZ00473 125 NKFKKLYENNYELEDIMKLFYFTENVGDIKSLMGAPDNEHYASSCKFVNDCLDIYRKYKDEKCSGN------SYNTFRGS 198 (420)
T ss_pred hhcccccccchhHHHHHHHHHHHhhhHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCc------CCCCCCcc
Confidence 888888899999999999877764322111122 3445566789999999999998887 444332 122211 2
Q ss_pred hhhHHHHHHHHHHHHHH
Q 002752 159 PRLTHLETSITRHKAHI 175 (885)
Q Consensus 159 ~r~~~le~~ieRhk~Hi 175 (885)
.=-.+|....+..+.|+
T Consensus 199 t~C~EL~~F~D~Yd~~m 215 (420)
T PTZ00473 199 TICNELNNFFDKYKEHL 215 (420)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 22345666666666554
No 161
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=63.75 E-value=28 Score=41.03 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhhHHHHHH
Q 002752 16 KKVQEGVDVFDSIWNKVYDTDNANQKEKFEA 46 (885)
Q Consensus 16 KKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~ 46 (885)
-+++--...|++++.++..+.-.|||+.||.
T Consensus 328 sqleSqr~y~e~~~~e~~qsqlen~k~~~e~ 358 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQSQLENQKQYYEL 358 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455556667777777777666667777763
No 162
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=63.45 E-value=1e+02 Score=39.77 Aligned_cols=74 Identities=15% Similarity=0.285 Sum_probs=47.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhcCCChhh-----HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Q 002752 13 RVLKKVQEGVD-VFDSIWNKVYDTDNANQ-----KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIER 86 (885)
Q Consensus 13 r~lKKV~EGve-~Fd~iyeK~~~a~n~nQ-----KEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~ 86 (885)
+.++-+.|+-. .|++.|.|+..-.+.++ -|-||..+-...+-|+.++|--|..+ +.+.+|++.-+-.+.
T Consensus 383 rlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~-----~E~ekl~~e~~t~~~ 457 (1195)
T KOG4643|consen 383 RLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQ-----FELEKLLEETSTVTR 457 (1195)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 45555666543 68889999887766555 35566666666677777777666543 234456665566666
Q ss_pred HHHHH
Q 002752 87 EMERF 91 (885)
Q Consensus 87 ~MErF 91 (885)
-|+|.
T Consensus 458 s~~rq 462 (1195)
T KOG4643|consen 458 SLSRQ 462 (1195)
T ss_pred hHHHH
Confidence 66665
No 163
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.29 E-value=1.7e+02 Score=37.96 Aligned_cols=85 Identities=22% Similarity=0.241 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccc------CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-
Q 002752 119 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK------GKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS- 191 (885)
Q Consensus 119 keK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK------~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ld- 191 (885)
+++.|-..=|...|++..-+++.|.+++-.+..++ +|.--..-..|+..|+..+.-+.+=|..||..-+..|-
T Consensus 428 ~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~n 507 (1200)
T KOG0964|consen 428 KEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVAN 507 (1200)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 45566666777888888888888888776653211 11000012346777788888888888888888777663
Q ss_pred -hhhhhhhhhHHH
Q 002752 192 -PEQVNDVKDLLE 203 (885)
Q Consensus 192 -pe~V~~IKddIe 203 (885)
-+-|.+|.+++.
T Consensus 508 Gi~~v~~I~e~~k 520 (1200)
T KOG0964|consen 508 GIDSVRKIKEELK 520 (1200)
T ss_pred hhHHHHHHHHHhc
Confidence 455555655555
No 164
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=63.27 E-value=72 Score=36.20 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhH----HHHhhhhcc---ccCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHhhhCCCCC----hhhhhhh
Q 002752 131 LVSELESQIDSF----EAELEGLTV---KKGKTRPPRLTHLETSITR-HKAHIMKLELILRLLDNDELS----PEQVNDV 198 (885)
Q Consensus 131 ~IdeL~~QiE~~----EaEiE~L~~---KK~K~~~~r~~~le~~ieR-hk~Hi~kLE~lLRlL~N~~ld----pe~V~~I 198 (885)
-|+.|+++-+.+ |.|-|.|.. ||-.+=..-..+|+..+++ +.|||.+|-..|..|.++... -+++..-
T Consensus 85 kl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~E 164 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRRE 164 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 356666665554 333333421 3333222233478888865 789999999999999876543 4566677
Q ss_pred hhHHHHHHHhCCC
Q 002752 199 KDLLEDYVERNQD 211 (885)
Q Consensus 199 KddIeyYVE~nqd 211 (885)
|=|+|.-+|..|+
T Consensus 165 KVdlEn~LE~EQE 177 (310)
T PF09755_consen 165 KVDLENTLEQEQE 177 (310)
T ss_pred HHhHHHHHHHHHH
Confidence 7789999987665
No 165
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=62.85 E-value=68 Score=30.19 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChh-hHHHHHHHHHH
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNAN-QKEKFEADLKK 50 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~n-QKEKlE~DLKK 50 (885)
++.|||++=+|+..+..--+.|-.|+...+-+. +|+.+|.++.-
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~ 47 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNE 47 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHH
Confidence 578999999999999999999999999998766 89999966543
No 166
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=62.51 E-value=1e+02 Score=32.88 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCccccCCCcccccC
Q 002752 174 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHL 225 (885)
Q Consensus 174 Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~nqdDf~ef~dde~iYd~ 225 (885)
+...+..++..+ -.++-+.|.-+|+-|--|-..--. -...||..|++
T Consensus 190 ~~~~~~~~~~~~--Q~lEe~Ri~~lk~~l~~y~n~is~---~cv~~d~~~e~ 236 (239)
T cd07647 190 WESEHATACQVF--QNMEEERIKFLRNALWVHCNLGSM---QCVKLDEMYED 236 (239)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHH---HHccchHHHHH
Confidence 344444455555 456788888888888887632222 23345666654
No 167
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=62.42 E-value=2.4e+02 Score=30.73 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 002752 164 LETSITRHKAHI 175 (885)
Q Consensus 164 le~~ieRhk~Hi 175 (885)
+...+++|+.-|
T Consensus 303 l~~~v~~~~~~i 314 (367)
T PF04286_consen 303 LERIVESNHIDI 314 (367)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 168
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=62.36 E-value=35 Score=34.61 Aligned_cols=86 Identities=21% Similarity=0.307 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccC---------CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCh--
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGLTVKKG---------KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSP-- 192 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~---------K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldp-- 192 (885)
.++-|-+.+++...+++.+....+.++.|=. =..+.|+.++...|...=.|...||.|.|.|.+.....
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV~~ 94 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSSVNS 94 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCcccc
Confidence 3334444455555555555555555432211 01356899999999999999999999999999887542
Q ss_pred ----hhhhhhhhHHHHHHHhCC
Q 002752 193 ----EQVNDVKDLLEDYVERNQ 210 (885)
Q Consensus 193 ----e~V~~IKddIeyYVE~nq 210 (885)
+-+..|-+.|+ ||+.|-
T Consensus 95 ~~F~~~L~~LD~cl~-Fl~~h~ 115 (157)
T PF04136_consen 95 DSFKPMLSRLDECLE-FLEEHP 115 (157)
T ss_pred hHHHHHHHHHHHHHH-HHHHhh
Confidence 22334556665 555453
No 169
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=62.26 E-value=2.3e+02 Score=30.51 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=25.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHH
Q 002752 158 PPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 202 (885)
Q Consensus 158 ~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddI 202 (885)
...+..|+..+.+..-++.-||.-|+.-.. +-+++-.|=|||
T Consensus 160 ~~e~~aLqa~lkk~e~~~~SLe~~LeQK~k---En~ELtkICDeL 201 (207)
T PF05010_consen 160 QAELLALQASLKKEEMKVQSLEESLEQKTK---ENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 345666777888888888888766654332 234444455544
No 170
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=61.55 E-value=2.9e+02 Score=32.82 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Q 002752 24 VFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARK 82 (885)
Q Consensus 24 ~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK 82 (885)
.|+.-.--+..-=|-.-|+|.|+..+||-..+-+..+.+|. .+.-+...-..|++...
T Consensus 214 Ey~rkm~aL~~~c~lE~r~k~e~~~qre~a~~~eaeel~k~-~~e~~a~e~~~LL~~lH 271 (429)
T PF12297_consen 214 EYDRKMVALTAECNLETRKKMEAQHQREMAEMEEAEELLKH-ASERSAAECSSLLRKLH 271 (429)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHhhHHHHHHHHHHHH
Confidence 44444444444445556899999999999999988888886 44333333333444333
No 171
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=61.14 E-value=48 Score=30.35 Aligned_cols=57 Identities=18% Similarity=0.348 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHH----HHHH---HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 9 GEIDRVLKKVQEGVDV----FDSI---WNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTW 65 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~----Fd~i---yeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW 65 (885)
.....+||.+.+-+.. |..+ |.++..+.+..+|+.|+.+|++=+|+|-.--|||...
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666655543 3444 7777888889999999999999999999999999753
No 172
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=60.90 E-value=58 Score=39.86 Aligned_cols=8 Identities=13% Similarity=0.356 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 002752 56 QRYRDQIK 63 (885)
Q Consensus 56 QR~RDQIK 63 (885)
+||+.+|+
T Consensus 432 e~l~~e~~ 439 (652)
T COG2433 432 ERLEEENS 439 (652)
T ss_pred HHHHHHHH
Confidence 44444443
No 173
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=60.86 E-value=2.1e+02 Score=32.36 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=9.7
Q ss_pred hhhhhhhhhHHHHHHH
Q 002752 192 PEQVNDVKDLLEDYVE 207 (885)
Q Consensus 192 pe~V~~IKddIeyYVE 207 (885)
.+-|..++..++.||.
T Consensus 322 ~~~~~~l~~~~~~fv~ 337 (339)
T cd09238 322 QEAVRRLKQECEDFVM 337 (339)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455566777777663
No 174
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=60.59 E-value=1.2e+02 Score=30.97 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-chhhH
Q 002752 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSE-IKDKK 75 (885)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~d-IKDK~ 75 (885)
.+|.+++..-++..+..|.-++..|...+..++ .|-|.
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka 47 (204)
T PF04740_consen 9 HSQAESTNSSLKELKEQLESLQKAINQFISSESSLKGKA 47 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHH
Confidence 456778888888888889999999999998888 77554
No 175
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=60.48 E-value=2.5e+02 Score=30.47 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 002752 119 KAKSETRDWLNNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 119 keK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
+-|.++..|.+.-|++|+.++.....++..+.
T Consensus 184 ~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~ 215 (312)
T PF00038_consen 184 KNREELEEWYQSKLEELRQQSEKSSEELESAK 215 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccccccccccccccccchhH
Confidence 56678889999999999999888888877763
No 176
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=59.98 E-value=1.2e+02 Score=31.68 Aligned_cols=37 Identities=24% Similarity=0.555 Sum_probs=27.2
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhhcCC-------ChhhHHHHHHHH
Q 002752 12 DRVLKKVQEG---VDVFDSIWNKVYDTD-------NANQKEKFEADL 48 (885)
Q Consensus 12 Dr~lKKV~EG---ve~Fd~iyeK~~~a~-------n~nQKEKlE~DL 48 (885)
+-||+-|+|| +..||++=+++.-+. |+-=|-+|+..+
T Consensus 17 EtVLrhIReG~TQL~AFeEvg~~L~RTsAACGFRWNs~VRkqY~~~i 63 (161)
T TIGR02894 17 ETVLRHIREGSTQLSAFEEVGRALNRTAAACGFRWNAYVRKQYEEAI 63 (161)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHcccHHHhcchHHHHHHHHHHHHH
Confidence 4689999999 789999999997553 233466666543
No 177
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=59.66 E-value=67 Score=35.57 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=3.7
Q ss_pred ccccccCC
Q 002752 103 FSKEGLGQ 110 (885)
Q Consensus 103 fSkEGL~~ 110 (885)
+-++|+..
T Consensus 187 L~~~g~is 194 (423)
T TIGR01843 187 LKEKGLVS 194 (423)
T ss_pred HHHcCCCC
Confidence 33445543
No 178
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.95 E-value=43 Score=40.91 Aligned_cols=141 Identities=23% Similarity=0.302 Sum_probs=66.5
Q ss_pred cCCChhhHHHHHHHHHH--HHH----HHHH-HHHHHHhhhccccchhhH----HHHHHHH-HHHHHHHHHHHHHhhhccc
Q 002752 34 DTDNANQKEKFEADLKK--EIK----KLQR-YRDQIKTWIQSSEIKDKK----ALVDARK-LIEREMERFKICEKETKTK 101 (885)
Q Consensus 34 ~a~n~nQKEKlE~DLKK--EIK----KLQR-~RDQIKtW~~s~dIKDK~----~L~e~RK-~IE~~MErFK~vEKe~KtK 101 (885)
+..|..|||-|-+-+|. +|| ++-| +-+-++ |...+.||.-- .|.++=. .+|+.- ++|-.-+
T Consensus 337 ~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~-~~d~~rika~VIrG~~l~eal~~~~e~~~------p~e~~~~ 409 (652)
T COG2433 337 SVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGI-WKDVERIKALVIRGYPLAEALSKVKEEER------PREKEGT 409 (652)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhHHHHHHHeecCCcHHHHHHHHHhhhc------ccccccc
Confidence 56678889888887653 222 2222 223334 78888888632 5655433 333322 2222222
Q ss_pred --cccccccCCCC---CCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcc----ccCCC-----CchhhHHHHHH
Q 002752 102 --AFSKEGLGQQP---KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV----KKGKT-----RPPRLTHLETS 167 (885)
Q Consensus 102 --afSkEGL~~~~---k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~----KK~K~-----~~~r~~~le~~ 167 (885)
-+.-++-..-. ++...-+.-.+-..=|+.-|++|++.||.++++++.+.. +.+|. ...|+..|+..
T Consensus 410 ~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~ 489 (652)
T COG2433 410 EEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKE 489 (652)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 11111111000 001111222233445666677777777777777776631 22221 23456666665
Q ss_pred HHHHHHHHHHHHHH
Q 002752 168 ITRHKAHIMKLELI 181 (885)
Q Consensus 168 ieRhk~Hi~kLE~l 181 (885)
++.-+--|..||.=
T Consensus 490 L~e~~~~ve~L~~~ 503 (652)
T COG2433 490 LEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 55544444444433
No 179
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=58.82 E-value=59 Score=39.66 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhh
Q 002752 120 AKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVK 199 (885)
Q Consensus 120 eK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IK 199 (885)
++..-.+=|+..|++|..+|+.++.+++.+...-++ -..++++.+...+++.--+.-.+.++.+|.+.+-..++++.+-
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q-~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQ-LEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344456678889999999999999999888532221 1123334444444444444555555556665544444444443
Q ss_pred hH
Q 002752 200 DL 201 (885)
Q Consensus 200 dd 201 (885)
|.
T Consensus 404 ~~ 405 (594)
T PF05667_consen 404 EA 405 (594)
T ss_pred HH
Confidence 33
No 180
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.81 E-value=1.9e+02 Score=36.27 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=10.3
Q ss_pred HHHHHHHHHhHHHHhhhh
Q 002752 132 VSELESQIDSFEAELEGL 149 (885)
Q Consensus 132 IdeL~~QiE~~EaEiE~L 149 (885)
++.++.+++.+.+-++.+
T Consensus 641 L~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 641 LERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555666665555555
No 181
>PTZ00332 paraflagellar rod protein; Provisional
Probab=58.49 E-value=2.6e+02 Score=33.99 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhHHHHhhhhcccc----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHH
Q 002752 130 NLVSELESQIDSFEAELEGLTVKK----GKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY 205 (885)
Q Consensus 130 ~~IdeL~~QiE~~EaEiE~L~~KK----~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyY 205 (885)
+-|.+|.+|+..+-.|--.. +|+ .+....|....+.+++--.-|-.+|+.++- ..+....+--.|+.|
T Consensus 324 nrI~eLer~Lq~l~~eR~~e-V~rRIe~~~rEekRr~~yeqFl~~asQHkqrL~~tv~-------Ncd~a~~~~~~lee~ 395 (589)
T PTZ00332 324 NKIQDLERQLQRLGTERFEE-VKRRIEENDREEKRRVEYQQFLEVAGQHKKLLELTVY-------NCDLALRCTGLVEEL 395 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 45666666665555332111 111 112245778888888888888888888776 345555666666666
Q ss_pred HHhC
Q 002752 206 VERN 209 (885)
Q Consensus 206 VE~n 209 (885)
|.+.
T Consensus 396 V~eg 399 (589)
T PTZ00332 396 VSEG 399 (589)
T ss_pred HHHH
Confidence 6533
No 182
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=58.27 E-value=1.6e+02 Score=37.64 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHH-----HHHHHHHHHHHHHHH
Q 002752 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEAD-----LKKEIKKLQRYRDQI 62 (885)
Q Consensus 10 EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~D-----LKKEIKKLQR~RDQI 62 (885)
.+++..-.-++-++.|..-.+-++-.-+.+||++-|+- |+-|.--|-|.|.|.
T Consensus 348 ~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~ 405 (980)
T KOG0980|consen 348 QLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQL 405 (980)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667778888888888777777777766654 444554444555443
No 183
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.01 E-value=1.9e+02 Score=34.47 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 002752 40 QKEKFEADLKKEIKKLQRYRDQIK 63 (885)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIK 63 (885)
+-|||++++.|--.-|--+|+||+
T Consensus 326 l~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 326 LADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHH
Confidence 344555555444444455555554
No 184
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=57.93 E-value=2.9e+02 Score=36.04 Aligned_cols=63 Identities=27% Similarity=0.363 Sum_probs=36.5
Q ss_pred Hhhhccccchhh-HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 002752 63 KTWIQSSEIKDK-KALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELES 137 (885)
Q Consensus 63 KtW~~s~dIKDK-~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~ 137 (885)
|-|+- .|+. ..+.+++...+..|+..|+++|+-|-=.=-++ +.+.++.|++.=++..-.+|+.
T Consensus 238 ~~~v~---y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~e---------eLe~~~~et~~~~s~~~~~~~e 301 (1072)
T KOG0979|consen 238 KKWVE---YKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKE---------ELESEKKETRSKISQKQRELNE 301 (1072)
T ss_pred ccccc---hHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh---------hHHhHHHhHHHHHHHHHHHHHH
Confidence 55653 4443 26777788888888999999988654322222 2344555555544444444433
No 185
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.84 E-value=3.1e+02 Score=30.68 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002752 128 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 188 (885)
Q Consensus 128 L~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~ 188 (885)
|+.+|+.=+..++.++.+-..|..| -..++..++...-|+..||..+.-|++.
T Consensus 139 i~~iv~aDk~ile~qk~dk~~Le~k--------q~~l~~~~e~l~al~~e~e~~~~~L~~q 191 (265)
T COG3883 139 ISVIVDADKKILEQQKEDKKSLEEK--------QAALEDKLETLVALQNELETQLNSLNSQ 191 (265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444222 2345666677777777788777777644
No 186
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=57.76 E-value=3.4e+02 Score=31.41 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002752 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (885)
Q Consensus 14 ~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIK 63 (885)
++..+.|-...++++..++.. .+..-|.+.-.+|++++..+.
T Consensus 258 ~~~~~~e~~q~Ld~l~~rL~~--------a~~~~L~~~~~~L~~L~~rL~ 299 (438)
T PRK00286 258 AVPDRAELLQRLQQLQQRLAR--------AMRRRLEQKRQRLDQLARRLK 299 (438)
T ss_pred hCccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhc
Confidence 333444445555555555522 233344444455555555543
No 187
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=57.76 E-value=1.3e+02 Score=32.95 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=23.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 002752 113 KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELE 147 (885)
Q Consensus 113 k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE 147 (885)
...|.-+++.+..+=...-++.|+.+++...++++
T Consensus 179 G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 179 GKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34677777777666666777777777666655554
No 188
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=57.70 E-value=1.1e+02 Score=37.72 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=29.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhh
Q 002752 157 RPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQ 194 (885)
Q Consensus 157 ~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~ 194 (885)
...||.+|+..++|.+--..-...||--|.||.+....
T Consensus 120 qEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SR 157 (617)
T PF15070_consen 120 QEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASR 157 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 35689999988888877777777788888899887443
No 189
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=57.62 E-value=56 Score=42.73 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 126 DWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 126 ~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
.=+..++.+|+.+|..++...+.+
T Consensus 619 ~~~~e~~~~l~~~i~sL~~~~~~~ 642 (1317)
T KOG0612|consen 619 TEISEIIAELKEEISSLEETLKAG 642 (1317)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhh
Confidence 344556666666666666665554
No 190
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=57.39 E-value=69 Score=40.45 Aligned_cols=156 Identities=20% Similarity=0.268 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh-------hhccccchhhH-------HHHHHHHHHHHHHHHHHHHHhhhccccc
Q 002752 38 ANQKEKFEADLKKEIKKLQRYRDQIKT-------WIQSSEIKDKK-------ALVDARKLIEREMERFKICEKETKTKAF 103 (885)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKt-------W~~s~dIKDK~-------~L~e~RK~IE~~MErFK~vEKe~KtKaf 103 (885)
-+|||-+--.|+.|+.-|+.-|-+--. .+.-.-.|-++ .|+|+|+..|-==+.--++||+--
T Consensus 286 lSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd---- 361 (1265)
T KOG0976|consen 286 LSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRD---- 361 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH----
Confidence 467888888888888888877654221 11111111111 566666666555555555555421
Q ss_pred cccccCCCCCCCchHHHH--HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCC---------chhhHH---------
Q 002752 104 SKEGLGQQPKTDPKEKAK--SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTR---------PPRLTH--------- 163 (885)
Q Consensus 104 SkEGL~~~~k~DP~ekeK--~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~---------~~r~~~--------- 163 (885)
..|+...++ .++.+ .+..+-|.....+++.|||.+..-|-++...|+-.. .+|++.
T Consensus 362 --~al~dvr~i--~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad 437 (1265)
T KOG0976|consen 362 --MALMDVRSI--QEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMAD 437 (1265)
T ss_pred --HHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 122211111 11111 112234455566777788777777766643222100 112111
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhH
Q 002752 164 ----------------LETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDL 201 (885)
Q Consensus 164 ----------------le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKdd 201 (885)
.+..|+..+--|.+|--++..|++..--+.+++.+|-.
T Consensus 438 ~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKae 491 (1265)
T KOG0976|consen 438 YQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAE 491 (1265)
T ss_pred HHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHH
Confidence 12233444555666666777777766556666665533
No 191
>PF14182 YgaB: YgaB-like protein
Probab=57.15 E-value=46 Score=30.99 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHH
Q 002752 52 IKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMER 90 (885)
Q Consensus 52 IKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MEr 90 (885)
.++|...|+.|.. -|+.|.+-++..|.++|.
T Consensus 39 ea~l~~i~~EI~~--------mkk~Lk~Iq~~Fe~QTee 69 (79)
T PF14182_consen 39 EAELHSIQEEISQ--------MKKELKEIQRVFEKQTEE 69 (79)
T ss_pred HHhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 3567777776653 356788899999988875
No 192
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=57.02 E-value=38 Score=40.97 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHH--HHHHHHHHHHHH
Q 002752 16 KKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDA--RKLIEREMERFK 92 (885)
Q Consensus 16 KKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~--RK~IE~~MErFK 92 (885)
-++.| .+.+|+--.+++---+.--.+- |..|+-|+|+=+|++.|- .+|+..++.+. ||-=|++.+.++
T Consensus 248 ~~~l~-~d~~d~~~~~~qlP~~evl~~~-e~~l~Ae~kqekRlq~~a-------~lkrv~k~~~re~~redeqql~~~~ 317 (645)
T KOG0681|consen 248 IKILE-MDYYDENRNYFQLPYTEVLAEV-ELALTAEKKQEKRLQEQA-------ALKRVEKINARENRREDEQQLESYN 317 (645)
T ss_pred HHHhh-hhhhhccceEEecccccccchh-hhhccHHHHHHHHHHHHH-------HHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 34445 6666665555553333222221 466788888889998882 33444444433 666666666664
No 193
>PRK04863 mukB cell division protein MukB; Provisional
Probab=56.92 E-value=3.5e+02 Score=36.81 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=10.5
Q ss_pred hhhhhhhhhHHHHHHHh
Q 002752 192 PEQVNDVKDLLEDYVER 208 (885)
Q Consensus 192 pe~V~~IKddIeyYVE~ 208 (885)
++.++.+.++.+.-+|.
T Consensus 553 ~~~~~~~~~~~~~~~~~ 569 (1486)
T PRK04863 553 EDELEQLQEELEARLES 569 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777666666555543
No 194
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=55.99 E-value=1.3e+02 Score=31.43 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002752 119 KAKSETRDWLNNLVSELESQID 140 (885)
Q Consensus 119 keK~E~~~wL~~~IdeL~~QiE 140 (885)
+...+-.+||+.....|+.|++
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555555555444
No 195
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=55.99 E-value=3.3e+02 Score=38.73 Aligned_cols=62 Identities=21% Similarity=0.372 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCC---Cccc-cCCCcccccCCCCCCcc
Q 002752 171 HKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD---DFEE-FSDVDELYHLLPLDKVE 232 (885)
Q Consensus 171 hk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~nqd---Df~e-f~dde~iYd~L~Lde~~ 232 (885)
|.--|..++.-=--|..|.-+-..|++||..|+.||..-+. |... -.+-..+|+-|-|....
T Consensus 1296 ~~~~I~~i~ekS~kl~~~~s~~s~i~~IKk~lq~nlq~a~~~nn~I~~~L~~Ikn~~~iL~snn~~ 1361 (2757)
T TIGR01612 1296 HDENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLNKIK 1361 (2757)
T ss_pred hHHHHHHHHHhhHHhhhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHccHH
Confidence 44444444422223445555668999999999999965432 2111 12345677777666543
No 196
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=55.91 E-value=2e+02 Score=30.51 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCccccCCCcccccC
Q 002752 174 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHL 225 (885)
Q Consensus 174 Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~nqdDf~ef~dde~iYd~ 225 (885)
....+..+++.|. .|+-+.|.-+|+.|--|...-.. .+..||..|+.
T Consensus 187 ~~~~~~~~~~~~Q--~lEe~Ri~~lk~~l~~~a~~~s~---~cv~~d~~~e~ 233 (236)
T cd07651 187 WNREWKAALDDFQ--DLEEERIQFLKSNCWTFANNIST---LCVDDDESCER 233 (236)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHcCcHHHHHH
Confidence 3444455555543 35677888888888777643322 22334555554
No 197
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=55.88 E-value=68 Score=33.91 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=14.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVY 33 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~iyeK~~ 33 (885)
||++.....++.|..--..|+....++.
T Consensus 111 k~~k~~~~~~~~l~KaK~~Y~~~c~~~e 138 (236)
T cd07651 111 KLLKKKQDQEKYLEKAREKYEADCSKIN 138 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4444455555555555555555554444
No 198
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=55.86 E-value=69 Score=31.83 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cchhhHHH-HHHHHHHHH
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS-EIKDKKAL-VDARKLIER 86 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~-dIKDK~~L-~e~RK~IE~ 86 (885)
.+|.+..||...-...||...+|+..+.....+..-|.+|.+--.++..++++++..+..= +.+. .-| .-.+..|+.
T Consensus 131 ~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~-~~l~~~l~~~i~~ 209 (229)
T PF03114_consen 131 KEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPKLFAKRQ-DILEPCLQSFIEA 209 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4677777788888888888888887766433332227777777788888888888877752 2222 233 455666666
Q ss_pred HHHHHHHHH
Q 002752 87 EMERFKICE 95 (885)
Q Consensus 87 ~MErFK~vE 95 (885)
++.=|+.|-
T Consensus 210 q~~~~~~~~ 218 (229)
T PF03114_consen 210 QLQYFQQLY 218 (229)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 199
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=55.85 E-value=5.4 Score=34.41 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhccccch-hhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002752 52 IKKLQRYRDQIKTWIQSSEIK-DKKALVDARKLIEREMERFKICEKETKTKA 102 (885)
Q Consensus 52 IKKLQR~RDQIKtW~~s~dIK-DK~~L~e~RK~IE~~MErFK~vEKe~KtKa 102 (885)
..++++--+.+..||...+-+ ........-.-|+..|++|+.++++++.+.
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~ 54 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQ 54 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHH
Confidence 344445555566666553322 111112333556677777777777766543
No 200
>PRK09039 hypothetical protein; Validated
Probab=55.77 E-value=1.9e+02 Score=32.95 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHH
Q 002752 160 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 202 (885)
Q Consensus 160 r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddI 202 (885)
.|+.++....-.+-.|..|+.-|+.+-.. ...++..++.++
T Consensus 159 ~L~~ae~~~~~~~~~i~~L~~~L~~a~~~--~~~~l~~~~~~~ 199 (343)
T PRK09039 159 ALDASEKRDRESQAKIADLGRRLNVALAQ--RVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHH
Confidence 34444444433444444444444332211 144555666666
No 201
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=55.67 E-value=2.4e+02 Score=28.87 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 002752 161 LTHLETSITRHKAHIMKL 178 (885)
Q Consensus 161 ~~~le~~ieRhk~Hi~kL 178 (885)
+..|+..|+++||.+-|.
T Consensus 140 i~~lr~~iE~~K~~~lr~ 157 (177)
T PF07798_consen 140 IANLRTEIESLKWDTLRW 157 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455677777777776553
No 202
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=55.53 E-value=3.2e+02 Score=30.08 Aligned_cols=43 Identities=9% Similarity=0.279 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhh-CCC-CChhhhhhhhhHHHHHHH
Q 002752 159 PRLTHLETSITRHKAHIMKLELILRLLD-NDE-LSPEQVNDVKDLLEDYVE 207 (885)
Q Consensus 159 ~r~~~le~~ieRhk~Hi~kLE~lLRlL~-N~~-ldpe~V~~IKddIeyYVE 207 (885)
.-.+.|...|+++-| ..++-+++.+. .-. .|.+ ++++++..|+
T Consensus 191 ~~~e~Lr~~iEkkL~--~d~~~~~~~~t~~~k~~d~e----~~~~~~~~i~ 235 (254)
T PF06798_consen 191 TSYERLREAIEKKLF--SDVKDLIKIITESSKTPDKE----QQRKIDEVIE 235 (254)
T ss_pred hhhHHHHHHHHHHHH--HHHHHHHHhcchhccCCCHH----HHHHHHHHHH
Confidence 445567788888887 56788888775 333 3444 4444454544
No 203
>PF09745 DUF2040: Coiled-coil domain-containing protein 55 (DUF2040); InterPro: IPR018612 This entry represents a conserved domain of approximately 130 residues of proteins conserved from fungi to humans. Some proteins containing this domain are described as coiled-coil domain-containing protein 55, but the function is unknown.
Probab=55.46 E-value=57 Score=32.47 Aligned_cols=91 Identities=26% Similarity=0.389 Sum_probs=51.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHH-----------HHHHHH------------HHHHHHHHHHHHHH
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKE-----------KFEADL------------KKEIKKLQRYRDQI 62 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKE-----------KlE~DL------------KKEIKKLQR~RDQI 62 (885)
+.+.++.+.|. .+--|=.||.||+-|......+... ||=+.| ..+=+||||=|+.=
T Consensus 2 ~~~~~~~~A~~-~DptvfdYD~vYD~m~~~~~~~~~~~~~~~~~~rkpKYi~~Ll~~A~~Rk~E~~~~~ErklqKERe~E 80 (127)
T PF09745_consen 2 QAKKEAQKALE-EDPTVFDYDEVYDDMKAKKEEKKQAKQQEDKEKRKPKYISNLLKAAKRRKRERERAEERKLQKEREAE 80 (127)
T ss_pred chHHHHHHHhc-cCChHhhHHHHHHHHhhhhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555665554 4556778899999998554433222 222222 22335666666542
Q ss_pred Hhhhccccchh---------hHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002752 63 KTWIQSSEIKD---------KKALVDARKLIEREMERFKICEKETKTKA 102 (885)
Q Consensus 63 KtW~~s~dIKD---------K~~L~e~RK~IE~~MErFK~vEKe~KtKa 102 (885)
+.+..| |+.|.|.|+.-|..-++=...++..+||.
T Consensus 81 -----g~~f~dkE~FVT~AYKkkleE~k~~eeee~~~e~~e~~~~~~k~ 124 (127)
T PF09745_consen 81 -----GDEFADKEKFVTSAYKKKLEERKKWEEEEKRREELEEKNDVTKQ 124 (127)
T ss_pred -----ccccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 344455 34778877777776665555555555543
No 204
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=55.25 E-value=2.2e+02 Score=29.89 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 002752 10 EIDRVLKKVQEGVDVFDSIWNKV 32 (885)
Q Consensus 10 EIDr~lKKV~EGve~Fd~iyeK~ 32 (885)
.+.++|.++.+..+-+..++.++
T Consensus 59 ~l~~~l~~~a~~~~~~~~~~~~~ 81 (216)
T cd07627 59 SLSDLLAALAEVQKRIKESLERQ 81 (216)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555543
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=55.10 E-value=53 Score=38.91 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 002752 74 KKALVDARKLIEREMERFKICEKETKTKAFSKEGL 108 (885)
Q Consensus 74 K~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL 108 (885)
-.+|..+|+.+|+.|.++-. ++-.-.|+|-++-+
T Consensus 327 ~sqleSqr~y~e~~~~e~~q-sqlen~k~~~e~~~ 360 (493)
T KOG0804|consen 327 TSQLESQRKYYEQIMSEYEQ-SQLENQKQYYELLI 360 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHH-HHHHhHHHHHHHHH
Confidence 34789999999998888654 33334455555444
No 206
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=55.04 E-value=36 Score=35.98 Aligned_cols=61 Identities=28% Similarity=0.354 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-ccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccC
Q 002752 46 ADLKKEIKKLQRYRDQIKTWIQS-SEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLG 109 (885)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s-~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~ 109 (885)
.-|++|=+-|++.++.++.--.. ..|+|+....+.-++++.=.+||+....-.+ +.+.+|.
T Consensus 82 k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d~~~k~qa~~l~~~~~~ry~~~~~l~~---~Y~~~l~ 143 (204)
T PF10368_consen 82 KELKKEKEAIEKAKEEFKKAKKYIDKIEDEKLKKQAKELNEAMKKRYKSYDKLYK---AYKKALE 143 (204)
T ss_dssp HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 34677777778888888766554 4688888777788888877788877766542 3455553
No 207
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=54.92 E-value=1.2e+02 Score=33.99 Aligned_cols=111 Identities=15% Similarity=0.241 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHH
Q 002752 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAK 121 (885)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK 121 (885)
++|..||..-+.+|..+-++|+.-... .+..+|..+..+|+.+- |. ..|+ ..--
T Consensus 153 ~~L~~dl~~rl~~i~~~v~~i~~~~p~-------~~~~~~~rL~~rl~el~--------------~~----~id~-~Rl~ 206 (291)
T TIGR00255 153 ENLKSDIVQRLDLIEREVKKVRSAMPD-------ILQWQRERLKARIEDLA--------------QE----FLDL-NRLE 206 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchH-------HHHHHHHHHHHHHHHHh--------------cC----CCCH-HHHH
Confidence 578889998888888888888765443 78889999998887752 11 1344 2222
Q ss_pred HHHHHH-----HHHHHHHHHHHHHhHHHHhhhhccccCCC-------------------Cc----hhhHHHHHHHHHHHH
Q 002752 122 SETRDW-----LNNLVSELESQIDSFEAELEGLTVKKGKT-------------------RP----PRLTHLETSITRHKA 173 (885)
Q Consensus 122 ~E~~~w-----L~~~IdeL~~QiE~~EaEiE~L~~KK~K~-------------------~~----~r~~~le~~ieRhk~ 173 (885)
+|+.=| +++=|+-|+..++.|..-++.-.. -||+ .. .-+-+++..||+-|.
T Consensus 207 qEval~adK~DI~EEl~RL~sHl~~f~~~L~~~~~-vGrkLDFL~QEmnRE~NTigSKs~d~~is~~vVe~K~eiEkiRE 285 (291)
T TIGR00255 207 QEAALLAQRIDIAEEIDRLDSHVKEFYNILKKGEA-VGRKLDFMMQELNRESNTLASKAIDADITNLAVEMKVLIEKIKE 285 (291)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcCCC-cCcchhHHHHHHhHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence 333322 345577788888888887765311 1221 11 134556677777777
Q ss_pred HHHHHH
Q 002752 174 HIMKLE 179 (885)
Q Consensus 174 Hi~kLE 179 (885)
+|.++|
T Consensus 286 QVQNIE 291 (291)
T TIGR00255 286 QIQNIE 291 (291)
T ss_pred HHhcCC
Confidence 777665
No 208
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=54.59 E-value=4.1e+02 Score=31.07 Aligned_cols=64 Identities=16% Similarity=0.318 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccc-------CCCCch---hhHHHHHHHHHHHHHHHHHHHHH
Q 002752 119 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK-------GKTRPP---RLTHLETSITRHKAHIMKLELIL 182 (885)
Q Consensus 119 keK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK-------~K~~~~---r~~~le~~ieRhk~Hi~kLE~lL 182 (885)
.-|....+.....+..+.+.|+.+....+...... .+.-+. ++--+.....|-+.-+.+|+.++
T Consensus 346 ~I~~~l~~~~~~ll~~~~~ei~~~~~~f~~~~~~~~~~~~~~~~~~Ppvag~i~w~r~L~~ri~~~~~~~~~~~ 419 (579)
T PF08385_consen 346 RIRKALQEKYEQLLQQFKEEIDQLKKIFDNQKEKSETDNPPLPRNLPPVAGAIIWARQLERRIKEPMQRLKSLL 419 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCcHHHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 34455666666777777777777777766643211 111122 45445555556666666666666
No 209
>smart00126 IL6 Interleukin-6 homologues. Family includes granulocyte colony-stimulating factor (G-CSF) and myelomonocytic growth factor (MGF). IL-6 is also known as B-cell stimulatory factor 2.
Probab=54.55 E-value=61 Score=33.33 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH-HHHHHHHHhhh
Q 002752 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTWI 66 (885)
Q Consensus 12 Dr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKtW~ 66 (885)
+.||+||..|+-+|..+++-+++.-. +-++..+. |-.-+|-| |.+|+++|.|-
T Consensus 53 e~CL~ri~~GL~~yq~~L~~l~~~f~-~~~~~v~~-l~~~~~~L~~~l~~k~k~~~ 106 (154)
T smart00126 53 EICLVKITAGLLEYQVYLEYLQNEFP-ENKENVDT-LQLDTKTLIQIIQQEMKDLG 106 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCc-cccccHHH-HHHHHHHHHHHHHHHhhCcC
Confidence 68999999999999999986654333 22444333 33334443 66778888885
No 210
>PRK10865 protein disaggregation chaperone; Provisional
Probab=54.09 E-value=3.3e+02 Score=34.67 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002752 46 ADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETK 99 (885)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~K 99 (885)
..|++.|..|++-.+.++. ..++..+..|.+.++.|+...++|..++...|
T Consensus 413 ~rLer~l~~L~~E~e~l~~---e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k 463 (857)
T PRK10865 413 DRLDRRIIQLKLEQQALMK---ESDEASKKRLDMLNEELSDKERQYSELEEEWK 463 (857)
T ss_pred HHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777666665532 22444455677777777777777776666555
No 211
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=53.89 E-value=2.6e+02 Score=31.76 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=11.0
Q ss_pred hhhhhhhhhHHHHHHH
Q 002752 192 PEQVNDVKDLLEDYVE 207 (885)
Q Consensus 192 pe~V~~IKddIeyYVE 207 (885)
.+-|..++.+++.||.
T Consensus 336 ~~~~~~~~~~~~~fv~ 351 (353)
T cd09236 336 AKILSQFRDACKAWVY 351 (353)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3566677777877774
No 212
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=53.89 E-value=89 Score=30.85 Aligned_cols=86 Identities=17% Similarity=0.327 Sum_probs=41.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLI 84 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~I 84 (885)
|+|..||++.-..|..--+..+..-.++.. ..+.--.++..++.+.++|...+|.+..-...-.-. +....--.|..
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~~--~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~-~tq~~~e~rkk 138 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELAS--AEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR-KTQYEHELRKK 138 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 455666666555554444444443333331 122233455666666667777777654332211111 11333344555
Q ss_pred HHHHHHHHH
Q 002752 85 EREMERFKI 93 (885)
Q Consensus 85 E~~MErFK~ 93 (885)
|.+|++.|.
T Consensus 139 e~E~~kLk~ 147 (151)
T PF11559_consen 139 EREIEKLKE 147 (151)
T ss_pred HHHHHHHHH
Confidence 677777653
No 213
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=53.73 E-value=1.2e+02 Score=27.31 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 002752 76 ALVDARKLIEREMERFKICEKET 98 (885)
Q Consensus 76 ~L~e~RK~IE~~MErFK~vEKe~ 98 (885)
+..-+|..||.=+.|+|.+|.++
T Consensus 43 kne~Ar~rvEamI~RLk~leq~~ 65 (65)
T TIGR02449 43 KNEQARQKVEAMITRLKALEQHT 65 (65)
T ss_pred HHHHHHHHHHHHHHhhhhhccCC
Confidence 56779999999999999999753
No 214
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=53.47 E-value=1.4e+02 Score=39.41 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002752 43 KFEADLKKEIKKLQRYRDQIK 63 (885)
Q Consensus 43 KlE~DLKKEIKKLQR~RDQIK 63 (885)
++..-|+.|.|||+|=|..+-
T Consensus 920 ~l~~lle~e~~~l~~dr~~l~ 940 (1605)
T KOG0260|consen 920 KLQNLLECEYKKLVRDRRVLL 940 (1605)
T ss_pred HHHHHHHHHHHhhhhhhhhhh
Confidence 444455555555555555554
No 215
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=53.44 E-value=25 Score=32.08 Aligned_cols=57 Identities=19% Similarity=0.397 Sum_probs=33.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHH-HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSI-WNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i-yeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (885)
+++.++-.++|.+.+.|..+..+ .....+...--++|||-.|++..++.+|+.-..+
T Consensus 37 ~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~ 94 (102)
T PF14523_consen 37 QLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRY 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666555554 1111111122468999999999999998766554
No 216
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=53.42 E-value=6.9 Score=46.87 Aligned_cols=76 Identities=5% Similarity=-0.183 Sum_probs=66.4
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHH
Q 002752 2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVD 79 (885)
Q Consensus 2 aa~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e 79 (885)
...|++.-+++.+.+++..++..++++-.+..+.....++...|.+.. ++.|++.+++++-||...+++++.....
T Consensus 146 ~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqd--pdF~e~e~iYd~l~le~~e~~~~~~~~~ 221 (575)
T KOG2150|consen 146 LERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQD--PDFLEDETIYDDLNLEELEASMDAVAPG 221 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccC--chhhhhhHHhhccCchhhhhhHhhhcCC
Confidence 345777788999999999999999999998888888889999999988 9999999999999999999987764433
No 217
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.10 E-value=91 Score=34.00 Aligned_cols=89 Identities=10% Similarity=0.182 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREM 88 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~M 88 (885)
.||-+.-|||..-.-.||..-.|+..+.++..++.+..+++.-=.|+--.++--+.-+.+= ++....+...+.+|+.+|
T Consensus 147 k~i~k~RKkle~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~a~~~M~~i-l~~~e~i~~L~~fv~AQl 225 (242)
T cd07600 147 QKAHKARKKVEDKRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVSATEEAVELMKEV-LDNPEPLQLLKELVKAQL 225 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhHHHHHHHHHHH-HhhhHHHHHHHHHHHHHH
Confidence 3777888888888889999888888877665555555555544344444444333333322 334457888888999999
Q ss_pred HHHHHHHhhh
Q 002752 89 ERFKICEKET 98 (885)
Q Consensus 89 ErFK~vEKe~ 98 (885)
+-||.|=+.+
T Consensus 226 ~Yh~~~~e~L 235 (242)
T cd07600 226 AYHKTAAELL 235 (242)
T ss_pred HHHHHHHHHH
Confidence 9998886554
No 218
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=53.03 E-value=67 Score=34.73 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=28.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcCCC------------hhhHHHHHHHHHHHHHHHHHHHHH
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN------------ANQKEKFEADLKKEIKKLQRYRDQ 61 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n------------~nQKEKlE~DLKKEIKKLQR~RDQ 61 (885)
|+|+-+...+|+|...-..|+....++..+.. ..+-||++.-|.|-...+.+.++.
T Consensus 123 kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~ 190 (258)
T cd07655 123 KAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDK 190 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666655543222 123355555555554444444433
No 219
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=53.01 E-value=40 Score=32.41 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHH-HHHHHhhhcc
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY-RDQIKTWIQS 68 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~-RDQIKtW~~s 68 (885)
..|...|-.|.+|+..-+.+++|+.-+-..=+||| ++-+|+||.-+- =-+||.|+-+
T Consensus 21 k~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~reR---e~dee~k~~n~Knir~~KmwilG 78 (98)
T PF11166_consen 21 KTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRER---EEDEENKKKNDKNIRDIKMWILG 78 (98)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHH
Confidence 36788899999999999999999976554445653 445555555432 3468889753
No 220
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=52.96 E-value=48 Score=33.06 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhhhhhhhHH
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLL 202 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ld-pe~V~~IKddI 202 (885)
++.=|.+++..+.+|+|.+-..+..- ..+|...|++.-.+++....+.+++.++--. -++|..|++||
T Consensus 37 Trr~m~~A~~~v~kql~~vs~~l~~t-----------KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv 105 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSESLSST-----------KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDV 105 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45557888999999999888776553 2467777777777777777777776644322 23444444444
Q ss_pred HH
Q 002752 203 ED 204 (885)
Q Consensus 203 ey 204 (885)
+.
T Consensus 106 ~~ 107 (126)
T PF07889_consen 106 DS 107 (126)
T ss_pred HH
Confidence 43
No 221
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=52.82 E-value=1e+02 Score=33.14 Aligned_cols=86 Identities=15% Similarity=0.268 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh--hHHHHHHHHHHHH
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD--KKALVDARKLIER 86 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKD--K~~L~e~RK~IE~ 86 (885)
.||-+..|||.-=.-.||..-.|+..+... ...+|.+|+.---|+-+..|..+.=+.+ |++ -..+...+.+||.
T Consensus 114 k~i~k~RKkLe~rRLdyD~~ksk~~kak~~--~~~~eeElr~Ae~kfees~E~a~~~M~~--i~~~e~e~~~~L~~lv~A 189 (215)
T cd07593 114 KEYHSARKKLESRRLAYDAALTKSQKAKKE--DSRLEEELRRAKAKYEESSEDVEARMVA--IKESEADQYRDLTDLLDA 189 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcChHHHHHHHHHHHH
Confidence 478888999999999999999999888544 3578888888888999999998888874 555 3588888999999
Q ss_pred HHHHHHHHHhhh
Q 002752 87 EMERFKICEKET 98 (885)
Q Consensus 87 ~MErFK~vEKe~ 98 (885)
+|+-||.|=..+
T Consensus 190 Ql~Yh~q~~e~L 201 (215)
T cd07593 190 ELDYHQQSLDVL 201 (215)
T ss_pred HHHHHHHHHHHH
Confidence 999998875443
No 222
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=52.78 E-value=72 Score=32.74 Aligned_cols=106 Identities=26% Similarity=0.370 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHhhhcc--ccchhhH-----HHHHHHHHHHHH
Q 002752 16 KKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKK-LQRYRDQIKTWIQS--SEIKDKK-----ALVDARKLIERE 87 (885)
Q Consensus 16 KKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKK-LQR~RDQIKtW~~s--~dIKDK~-----~L~e~RK~IE~~ 87 (885)
++|.|....|..-+.++....+. .++.+=||. ..-++++|+.|+++ .+|||+. .|.+.|..|++.
T Consensus 3 ~~~~e~~~~~~~~~~~~~~~~~~-------~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et 75 (155)
T PF07464_consen 3 QHAQEFQKEFQEQVNKLLGSQNQ-------QEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEET 75 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTSS--S-------S-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Confidence 67899999999999999876332 234444443 45677888888887 7788743 666777777766
Q ss_pred HHHHHHHHhhhccccccccccCCCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 002752 88 MERFKICEKETKTKAFSKEGLGQQPKTDPK-EKAKSETRDWLNNLVSELESQIDSFEAELEG 148 (885)
Q Consensus 88 MErFK~vEKe~KtKafSkEGL~~~~k~DP~-ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~ 148 (885)
-+.++ | ..|. ++.-.+..+=|...|..|-.+++.+-.+|..
T Consensus 76 ~~~L~------k--------------~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~ 117 (155)
T PF07464_consen 76 AEKLR------K--------------ANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSE 117 (155)
T ss_dssp HHGGG------G---------------SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHH------h--------------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65532 1 1343 2333446666777777777777777777644
No 223
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.55 E-value=2.6e+02 Score=30.59 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RD 60 (885)
+=.+.+||.+....||..-. .+==++|+.-|-++||+.+++|.
T Consensus 112 ~g~a~~kIa~ar~~~D~~I~-------~~Fl~pL~~~L~~d~k~i~k~RK 154 (242)
T cd07600 112 YSDAEEKIAEARLEQDQLIQ-------KEFNAKLRETLNTSFQKAHKARK 154 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777775433 22245677777777777777773
No 224
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=52.33 E-value=1.9e+02 Score=28.36 Aligned_cols=116 Identities=12% Similarity=0.098 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchH-
Q 002752 40 QKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKE- 118 (885)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~e- 118 (885)
.+++.|...+.++-+.++..++...=+. .|.++|.-.+.++.. . ...|+ ++.+
T Consensus 13 l~~~~ee~a~~~L~~a~~~~~~~~~~L~--------~L~~~~~~~~~~~~~----------~--~~~g~------~~~~l 66 (146)
T PRK07720 13 LKENEKEKALGEYEEAVSRFEQVAEKLY--------ELLKQKEDLEQAKEE----------K--LQSGL------SIQEI 66 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH----------H--hhCCC------CHHHH
Confidence 4778888888888888887777665443 366777666665533 0 13343 3332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 002752 119 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELIL 182 (885)
Q Consensus 119 keK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lL 182 (885)
.--..-...|...|......|..++.++|.....= -....+...++.+.+|+..+....|..-
T Consensus 67 ~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~-~ea~~~~k~~ekLker~~~~~~~~e~r~ 129 (146)
T PRK07720 67 RHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDL-TEKNIEVKKYEKMKEKKQEMFALEEKAA 129 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455777888889999999999999988753100 0001122346777777766665555443
No 225
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.31 E-value=4.3e+02 Score=31.09 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=10.3
Q ss_pred hhhhhhhhHHHHHHHhC
Q 002752 193 EQVNDVKDLLEDYVERN 209 (885)
Q Consensus 193 e~V~~IKddIeyYVE~n 209 (885)
.+..+++.-+..|.+.+
T Consensus 464 ~~~~d~~~~~~~~~d~~ 480 (503)
T KOG2273|consen 464 SRRQDFKESLKKYADLH 480 (503)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55556666666666654
No 226
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.91 E-value=4.5e+02 Score=33.43 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=39.5
Q ss_pred ccchhhhHHHHHHHH-HHHHHHHHHHHHHhhcCCC------hhhHHHHHHHHHHHHHHH-----HHHHHHHH
Q 002752 4 SRKLQGEIDRVLKKV-QEGVDVFDSIWNKVYDTDN------ANQKEKFEADLKKEIKKL-----QRYRDQIK 63 (885)
Q Consensus 4 ~RKLQ~EIDr~lKKV-~EGve~Fd~iyeK~~~a~n------~nQKEKlE~DLKKEIKKL-----QR~RDQIK 63 (885)
.|-||.|=-|---.+ ++|+..-+.++.||..--+ .-.-|-||-.-|+||.++ .|+|+--|
T Consensus 799 LR~LQkeE~R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eak 870 (1187)
T KOG0579|consen 799 LRRLQKEEARQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAK 870 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356676665554443 5788888899888874332 222567788888888887 46666544
No 227
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=51.83 E-value=2.1e+02 Score=31.89 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
...+-...|++|..+|..+++|++.|+
T Consensus 194 ei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 194 EIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666667777777777766653
No 228
>PRK10780 periplasmic chaperone; Provisional
Probab=51.68 E-value=1.5e+02 Score=29.90 Aligned_cols=90 Identities=9% Similarity=0.201 Sum_probs=49.0
Q ss_pred chhhhHHHHHH----HHHHHHHHHHHHHHHhhcC---CChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHH
Q 002752 6 KLQGEIDRVLK----KVQEGVDVFDSIWNKVYDT---DNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALV 78 (885)
Q Consensus 6 KLQ~EIDr~lK----KV~EGve~Fd~iyeK~~~a---~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~ 78 (885)
+.+.++++-++ ++..=...|+..+++++.. -+..+|++.|.+|.+..+.+||...+... |+. ....
T Consensus 43 ~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq-----~~~--~~~~ 115 (165)
T PRK10780 43 GVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQ-----DRR--RRSN 115 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH--HHHH
Confidence 34444444444 4444445777777777543 34567888888876655556555544321 111 1223
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccc
Q 002752 79 DARKLIEREMERFKICEKETKTKAFS 104 (885)
Q Consensus 79 e~RK~IE~~MErFK~vEKe~KtKafS 104 (885)
+.++-|-.++. ++|++-.|.+.|+
T Consensus 116 e~~~~i~~ki~--~ai~~vak~~gy~ 139 (165)
T PRK10780 116 EERNKILTRIQ--TAVKSVANKQGYD 139 (165)
T ss_pred HHHHHHHHHHH--HHHHHHHHHcCCe
Confidence 33334444443 4577777777776
No 229
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=51.40 E-value=1.1e+02 Score=33.11 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh--hHHHHHHHHHHHH
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD--KKALVDARKLIER 86 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKD--K~~L~e~RK~IE~ 86 (885)
.+|-+..|||.--.-.||..-.|+..+.+.....++|.+|+.---|+.+..+--+.-+.+ |++ -..|.+.+.+|+.
T Consensus 133 k~i~k~RKkLe~rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~E~a~~~M~~--i~~~~~~~~~~L~~lv~A 210 (229)
T cd07594 133 KTISKERKLLENKRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQAEITKLLLEG--ISSTHANHLRCLRDFVEA 210 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCchHHHHHHHHHHH
Confidence 377888899999999999999999888776667788888888888888888877766654 444 4588888999999
Q ss_pred HHHHHHHHHhhh
Q 002752 87 EMERFKICEKET 98 (885)
Q Consensus 87 ~MErFK~vEKe~ 98 (885)
+++=|+.|=..+
T Consensus 211 Ql~Yh~q~~e~L 222 (229)
T cd07594 211 QMTYYAQCYQYM 222 (229)
T ss_pred HHHHHHHHHHHH
Confidence 999998885443
No 230
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=51.38 E-value=5e+02 Score=31.08 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=7.9
Q ss_pred HHHHHHhhhCCCC
Q 002752 178 LELILRLLDNDEL 190 (885)
Q Consensus 178 LE~lLRlL~N~~l 190 (885)
+..|-..|.+|.-
T Consensus 414 ~~~l~~~l~~~~~ 426 (582)
T PF09731_consen 414 VDALKSALDSGNA 426 (582)
T ss_pred HHHHHHHHHcCCC
Confidence 4455667777744
No 231
>PRK05287 hypothetical protein; Provisional
Probab=51.38 E-value=56 Score=35.92 Aligned_cols=123 Identities=20% Similarity=0.301 Sum_probs=73.5
Q ss_pred HHHHHH-HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHH
Q 002752 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSET 124 (885)
Q Consensus 46 ~DLKKE-IKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~ 124 (885)
+|||-| ||.|.|.|-.++.|..+.+|- ...|......|+...+.-..+ .|-|-. -.-
T Consensus 57 ~DlKsdLlKeLerq~~~L~~~~~~p~vd-~~~l~~~l~~l~~~~~~L~~~---------~r~Gq~------------Lre 114 (250)
T PRK05287 57 GDLKSDLLKELERQRQKLQKWRGNPGVD-QEALEALLQELEQASAALNAA---------PRIGQS------------LRE 114 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHHHHHHHHhc---------ccccch------------hhh
Confidence 588886 588999999999999999885 445777777777777553221 121211 111
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-CCCC
Q 002752 125 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD-NDEL 190 (885)
Q Consensus 125 ~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~-N~~l 190 (885)
-+||..+=.-+.--=-.++-|+=.+..=..+....|..+++.|++-..-=.+-|.++||+|. ++..
T Consensus 115 de~L~siRQR~~iPGG~C~FDLP~yh~Wl~~p~~~R~~dl~~W~~~l~pl~~al~l~L~LlR~sg~~ 181 (250)
T PRK05287 115 DRFLSSIRQRLSIPGGCCSFDLPALHAWLHLPQEQRQQDLQQWLAPLAPLRDALTLVLRLLRESGQF 181 (250)
T ss_pred hHHHHHHHHHhcCCCcccCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 23554332211111122333333332112222345778889999888888888999999884 4443
No 232
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=51.17 E-value=5.4e+02 Score=32.50 Aligned_cols=174 Identities=20% Similarity=0.253 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh------hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc----------ccchh
Q 002752 10 EIDRVLKKVQEGVDVFDSIWNKV------YDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS----------SEIKD 73 (885)
Q Consensus 10 EIDr~lKKV~EGve~Fd~iyeK~------~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s----------~dIKD 73 (885)
++++-.-+..+....+++++..+ +..-...|+.|++--++.|+-- ++.+++.|.-. ++..-
T Consensus 354 ~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~---l~q~l~~~~k~e~~e~~k~~~d~~~r 430 (698)
T KOG0978|consen 354 EKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETES---LLQRLKALDKEERSEIRKQALDDAER 430 (698)
T ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 55566666777788888877742 2444556666666444444332 22333333322 11111
Q ss_pred -hHHHHHHHHHHHHHHHHHH--HHHhhhccccccccc-----cCC--CCCCCc-------------hHHHHHHHHHHHHH
Q 002752 74 -KKALVDARKLIEREMERFK--ICEKETKTKAFSKEG-----LGQ--QPKTDP-------------KEKAKSETRDWLNN 130 (885)
Q Consensus 74 -K~~L~e~RK~IE~~MErFK--~vEKe~KtKafSkEG-----L~~--~~k~DP-------------~ekeK~E~~~wL~~ 130 (885)
++.+.+.-+-|...++-|| ..|-++..-||...= |.. ..+.|. .-+.-.+...=|..
T Consensus 431 ~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~ 510 (698)
T KOG0978|consen 431 QIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEE 510 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1244555556666777788 445555555666510 000 001111 01222233444556
Q ss_pred HHHHHHHHHHhHHHHhhhhccc-cC-----CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002752 131 LVSELESQIDSFEAELEGLTVK-KG-----KTRPPRLTHLETSITRHKAHIMKLELILRLLD 186 (885)
Q Consensus 131 ~IdeL~~QiE~~EaEiE~L~~K-K~-----K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~ 186 (885)
.|-+|..+++.++..+-.|..+ ++ .+....+..+...++.|++|+..+..-++-|.
T Consensus 511 ~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq 572 (698)
T KOG0978|consen 511 QILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQ 572 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666554211 00 01122344455667788888877777666554
No 233
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=51.01 E-value=51 Score=38.38 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=34.7
Q ss_pred HHHHHHHHHhHHHHhhhhc-------cccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002752 132 VSELESQIDSFEAELEGLT-------VKKGKTRPPRLTHLETSITRHKAHIMKLELILR 183 (885)
Q Consensus 132 IdeL~~QiE~~EaEiE~L~-------~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLR 183 (885)
=|+|+.-+|...+||-.|. .|=--..-+|.-++++.+|..+.||.|||+.+-
T Consensus 312 EEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 312 EEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666665552 111112346888999999999999999998765
No 234
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=50.84 E-value=52 Score=33.83 Aligned_cols=26 Identities=27% Similarity=0.599 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002752 42 EKFEADLKKEIKKLQRYRDQIKTWIQ 67 (885)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~ 67 (885)
|+|..+.++||+||=++|.--|...-
T Consensus 76 e~Y~~~a~~Em~KLi~yk~~aKsyAk 101 (152)
T PF11500_consen 76 ESYHEKAEKEMEKLIKYKQLAKSYAK 101 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778999999999999988888764
No 235
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=50.43 E-value=6.4e+02 Score=32.07 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=9.8
Q ss_pred hhhhHHHHHHHHHH
Q 002752 7 LQGEIDRVLKKVQE 20 (885)
Q Consensus 7 LQ~EIDr~lKKV~E 20 (885)
.|.|+||+-|.|.+
T Consensus 344 ~q~eLdK~~~~i~~ 357 (961)
T KOG4673|consen 344 VQLELDKTKKEIKM 357 (961)
T ss_pred HHHHHHHHHHHHHH
Confidence 47788888777544
No 236
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=50.35 E-value=4.6e+02 Score=30.42 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCC-hhhhhhhhhHHH
Q 002752 166 TSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLE 203 (885)
Q Consensus 166 ~~ieRhk~Hi~kLE~lLRlL~N~~ld-pe~V~~IKddIe 203 (885)
..+++..-.|.+||.|+|.|.-++-+ ...+.+++..|.
T Consensus 292 k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~ 330 (391)
T KOG1850|consen 292 KEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVS 330 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccc
Confidence 35567788899999999999988876 344555554444
No 237
>PF13514 AAA_27: AAA domain
Probab=49.73 E-value=3.7e+02 Score=34.98 Aligned_cols=48 Identities=10% Similarity=0.210 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHH---HHHHHHHHHHHHHHHHhhh
Q 002752 51 EIKKLQRYRDQIKTWIQSSEIKDKKALVD---ARKLIEREMERFKICEKET 98 (885)
Q Consensus 51 EIKKLQR~RDQIKtW~~s~dIKDK~~L~e---~RK~IE~~MErFK~vEKe~ 98 (885)
--++|+.++.+|..++..-.+++...|.+ .....+...++...+|+..
T Consensus 820 ~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l 870 (1111)
T PF13514_consen 820 AEEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQL 870 (1111)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777777776554433 2223333344555555554
No 238
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=49.31 E-value=2.3e+02 Score=26.56 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVYD 34 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~iyeK~~~ 34 (885)
++...+++.+....+++.++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~ 100 (181)
T PF12729_consen 77 RQEIEKEIDEARAEIDEALEEYEK 100 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 239
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=49.09 E-value=18 Score=32.46 Aligned_cols=21 Identities=48% Similarity=0.556 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 002752 46 ADLKKEIKKLQRYRDQIKTWI 66 (885)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~ 66 (885)
.+||||||||+|.=-|+|.=+
T Consensus 5 ~eLk~evkKL~~~A~~~kmdL 25 (66)
T PF05082_consen 5 EELKKEVKKLNRKATQAKMDL 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 579999999998887777533
No 240
>PF07072 DUF1342: Protein of unknown function (DUF1342); InterPro: IPR009777 This family consists of several hypothetical bacterial proteins of around 250 residues in length. Members of this family are often known as YacF after the Escherichia coli protein P36680 from SWISSPROT. The function of this family is unknown.; PDB: 2OEZ_A.
Probab=48.93 E-value=30 Score=36.92 Aligned_cols=47 Identities=26% Similarity=0.529 Sum_probs=34.2
Q ss_pred HHHHHH-HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 002752 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKI 93 (885)
Q Consensus 46 ~DLKKE-IKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~ 93 (885)
+|||-| ||.|.|++-.++.|....+|... +|.+....|+.....-..
T Consensus 39 ~DlK~eLlKELeRq~~~L~~~~~~p~vd~~-~l~~~l~~l~~~~~~L~~ 86 (211)
T PF07072_consen 39 ADLKSELLKELERQRQKLNQWRDNPGVDQE-ALDALLQELDQALQALQQ 86 (211)
T ss_dssp S-HHHHHHHHHHHHHHHHHCTTT-TTS-HH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHHHHh
Confidence 477876 58899999999999999999554 477777777777665433
No 241
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=48.30 E-value=1.3e+02 Score=31.75 Aligned_cols=31 Identities=13% Similarity=0.398 Sum_probs=21.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT 35 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a 35 (885)
.|||.++.+++++|..--..|+..+.....+
T Consensus 115 ~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a 145 (251)
T cd07653 115 SKLQQKLESSIKQLEKSKKAYEKAFKEAEKA 145 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777766544433
No 242
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=48.20 E-value=1.1e+02 Score=28.88 Aligned_cols=23 Identities=43% Similarity=0.439 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 002752 76 ALVDARKLIEREMERFKICEKET 98 (885)
Q Consensus 76 ~L~e~RK~IE~~MErFK~vEKe~ 98 (885)
.|..-|.-|+..|+.|+.-|++.
T Consensus 15 ~l~~kr~e~~~~~~~~~~~e~~L 37 (126)
T PF13863_consen 15 ALDTKREEIERREEQLKQREEEL 37 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443
No 243
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=48.12 E-value=3.5e+02 Score=34.36 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCC
Q 002752 76 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQ 110 (885)
Q Consensus 76 ~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~ 110 (885)
.|.+....||..-|.--.++|+..+--|+-+++..
T Consensus 542 ~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~ 576 (809)
T KOG0247|consen 542 QLNDKKEQIEQLRDEIERLKKENLTTEYSIEILES 576 (809)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 45555566666666654556666665555555543
No 244
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=48.06 E-value=1.6e+02 Score=39.00 Aligned_cols=12 Identities=8% Similarity=0.224 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 002752 19 QEGVDVFDSIWN 30 (885)
Q Consensus 19 ~EGve~Fd~iye 30 (885)
.|+.+.|.-.|+
T Consensus 1155 ~ed~e~v~a~~e 1166 (1605)
T KOG0260|consen 1155 DEDREFVVAYYE 1166 (1605)
T ss_pred ccchhhHHhhhc
Confidence 455555554444
No 245
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=48.04 E-value=4.4e+02 Score=29.97 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhCCC-CChhhhhhhh
Q 002752 175 IMKLELILRLLDNDE-LSPEQVNDVK 199 (885)
Q Consensus 175 i~kLE~lLRlL~N~~-ldpe~V~~IK 199 (885)
..+.+.|...|.+|. |+.|++--|+
T Consensus 264 kera~ei~EKfk~GekLt~EelllLq 289 (294)
T COG1340 264 KERAEEIYEKFKRGEKLTTEELLLLQ 289 (294)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 345666666666666 8888777665
No 246
>PF14282 FlxA: FlxA-like protein
Probab=47.49 E-value=31 Score=32.84 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhHHHHhhhhccccC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 129 NNLVSELESQIDSFEAELEGLTVKKG---KTRPPRLTHLETSITRHKAHIMKLELILRLL 185 (885)
Q Consensus 129 ~~~IdeL~~QiE~~EaEiE~L~~KK~---K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL 185 (885)
...|..|++||..+..+|..|...+. +.+..++..|+..|.-..-+|..|..-..--
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999988865322 2233466677777777777777766554433
No 247
>PLN03223 Polycystin cation channel protein; Provisional
Probab=46.64 E-value=2.7e+02 Score=37.61 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=32.6
Q ss_pred HHHHHHHHHH------------HHHHHHHhhhccccch--hhHHHHHHHHHH-----HHHHH----HHHHHHhhh
Q 002752 47 DLKKEIKKLQ------------RYRDQIKTWIQSSEIK--DKKALVDARKLI-----EREME----RFKICEKET 98 (885)
Q Consensus 47 DLKKEIKKLQ------------R~RDQIKtW~~s~dIK--DK~~L~e~RK~I-----E~~ME----rFK~vEKe~ 98 (885)
=+++..|++- |+|+|++.|-.-++-+ ++.-+.|-||+. |-.|| -||.|=+|+
T Consensus 1442 fm~~rfrslL~g~~~~~~i~~~~~~~~lr~w~ge~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~v~~~c~~~~ 1516 (1634)
T PLN03223 1442 MLRDKWRSMFKGWFYKNHIPEARVRRQLRIWKGENPDEEEEEAFREEKEKVFTYLNKELDEAGLKRVLRRCVIET 1516 (1634)
T ss_pred HHHHHHHHHHhhhcccccCCcHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 3566666665 8999999999886655 344555566554 33444 455565554
No 248
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=46.34 E-value=4.3e+02 Score=31.84 Aligned_cols=29 Identities=34% Similarity=0.482 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccc
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGLTVK 152 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L~~K 152 (885)
...=|..++.=|+.|++.|+..++.+...
T Consensus 134 ~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~ 162 (475)
T PRK10361 134 NRQSLNSLLSPLREQLDGFRRQVQDSFGK 162 (475)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34456778888888999999888887543
No 249
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=46.18 E-value=4.6e+02 Score=32.78 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 002752 40 QKEKFEADLKKEIKKLQRYRDQIKT 64 (885)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQIKt 64 (885)
+.+++++|+..-..+|+.-++.|..
T Consensus 176 ~~~~~~~~~~~~~~~l~~v~~~~~~ 200 (670)
T KOG0239|consen 176 ESLKLESDLGDLVTELEHVTNSISE 200 (670)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4566777777776777666666655
No 250
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=46.11 E-value=3.2e+02 Score=27.29 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQ 56 (885)
+|.+++++..|++.-+++-+=+ .+|-.+|.+--|.+.||-
T Consensus 2 ~~~l~~~~~~g~~~~~e~~~f~------keRa~iE~eYak~L~kLa 41 (191)
T cd07610 2 FELLEKRTELGLDLLKDLREFL------KKRAAIEEEYAKNLQKLA 41 (191)
T ss_pred chHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 4788999999999999987776 457788888877777774
No 251
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=45.98 E-value=3.8 Score=48.78 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=37.3
Q ss_pred chhhHHHHHHHHHHHHHHH--HHHHHHHhhhCCC-CC--hhhhhhhhhHHHHHHHhCCC
Q 002752 158 PPRLTHLETSITRHKAHIM--KLELILRLLDNDE-LS--PEQVNDVKDLLEDYVERNQD 211 (885)
Q Consensus 158 ~~r~~~le~~ieRhk~Hi~--kLE~lLRlL~N~~-ld--pe~V~~IKddIeyYVE~nqd 211 (885)
..|++.|++.++.+.--|- +. .||-+|+|+. || ...|..|-|-|..-+..|..
T Consensus 402 e~Ri~~l~~~v~d~~~d~wsyna-ELlVlleN~~tld~~Ds~~~~L~ekvk~qL~~na~ 459 (550)
T PF00509_consen 402 EKRIDNLEKKVDDKIADVWSYNA-ELLVLLENQRTLDLHDSNVNNLYEKVKRQLRENAE 459 (550)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGEE
T ss_pred HHHHHHHHHhhhccchhhhcccH-HHHHHhccccchhhhHHHHHHHHHHHHHHHhccch
Confidence 4578888888876654442 33 3556788877 54 67788888888888887765
No 252
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=45.84 E-value=2.7e+02 Score=30.96 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 39 NQKEKFEADLKKEIKKLQRYRDQIKTW 65 (885)
Q Consensus 39 nQKEKlE~DLKKEIKKLQR~RDQIKtW 65 (885)
.+..-++..+.+--..+++++..++.|
T Consensus 81 ~~l~~l~~~~~~l~a~~~~l~~~~~~~ 107 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVARLRAEADSQ 107 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344445555555444555555555544
No 253
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=45.77 E-value=3.7e+02 Score=28.57 Aligned_cols=94 Identities=21% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 002752 13 RVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFK 92 (885)
Q Consensus 13 r~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK 92 (885)
+++-..+......+..-+++....-.+.-+|++ +|++||+.+++--++++. ...+-.+.|-.+|+||
T Consensus 120 ~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~-~~~~ev~~~e~~~~~a~~-----------~fe~is~~~k~El~rF- 186 (224)
T cd07623 120 KVWQNWQNAQQTLTKKREAKAKLELSGRTDKLD-QAQQEIKEWEAKVDRGQK-----------EFEEISKTIKKEIERF- 186 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH-HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH-
Q ss_pred HHHhhhccccccccccCCCCCCCchHHHHHH-----HHHHHHHHHHHHHHHHHhHHH
Q 002752 93 ICEKETKTKAFSKEGLGQQPKTDPKEKAKSE-----TRDWLNNLVSELESQIDSFEA 144 (885)
Q Consensus 93 ~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E-----~~~wL~~~IdeL~~QiE~~Ea 144 (885)
+++|.. ...||...|+.-++.++.+|.
T Consensus 187 -------------------------~~erv~dfk~~l~~~le~~i~~q~~~~~~We~ 218 (224)
T cd07623 187 -------------------------EKNRVKDFKDIIIKYLESLLNTQQQLIKYWEA 218 (224)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 254
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=45.68 E-value=3.2e+02 Score=27.24 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=11.8
Q ss_pred hhhhhhhhhHHHHHHHhC
Q 002752 192 PEQVNDVKDLLEDYVERN 209 (885)
Q Consensus 192 pe~V~~IKddIeyYVE~n 209 (885)
.+.|.-+++-+.+|++..
T Consensus 158 e~r~~~~~~~l~~~~~~~ 175 (191)
T cd07610 158 EERLEILKDNLKNYINAI 175 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666777777777543
No 255
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=45.56 E-value=3.1e+02 Score=33.09 Aligned_cols=52 Identities=25% Similarity=0.276 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 002752 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKET 98 (885)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~ 98 (885)
||++.|.+|+|..+.+|.=+.+.=-+.......+-+..+.-++|=+.+.+|.
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI 62 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREI 62 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7888888888888888776654222223344445555555567777777776
No 256
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.36 E-value=5e+02 Score=32.86 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhHHHHhhh
Q 002752 128 LNNLVSELESQIDSFEAELEG 148 (885)
Q Consensus 128 L~~~IdeL~~QiE~~EaEiE~ 148 (885)
.+..|.+.+++++.+-.++..
T Consensus 575 a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 575 AQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666543
No 257
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=45.35 E-value=2.4e+02 Score=33.79 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhcCCChh-hHHHHHHHHHHHHHHHHHHHHHHHh
Q 002752 18 VQEGVDVFDSIWNKVYDTDNAN-QKEKFEADLKKEIKKLQRYRDQIKT 64 (885)
Q Consensus 18 V~EGve~Fd~iyeK~~~a~n~n-QKEKlE~DLKKEIKKLQR~RDQIKt 64 (885)
+.+-...|...|.++......= +..+-+.++++++..|+..-+.|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 156 ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 3455666666676665543221 1112234444555554444444443
No 258
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=45.08 E-value=2.3e+02 Score=32.39 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 159 PRLTHLETSITRHKAHIMKLELILRLL 185 (885)
Q Consensus 159 ~r~~~le~~ieRhk~Hi~kLE~lLRlL 185 (885)
+||+++...+.+.+.||.-|=.-||..
T Consensus 140 eRia~~cnaL~qYkqhIelfG~nLrqc 166 (421)
T KOG4429|consen 140 ERIAHCCNALGQYKQHIELFGPNLRQC 166 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 488999999999999998766666543
No 259
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=44.92 E-value=3.8e+02 Score=29.12 Aligned_cols=38 Identities=32% Similarity=0.566 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 002752 54 KLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFK 92 (885)
Q Consensus 54 KLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK 92 (885)
|++.+...|+.|-.--+.- +....+--+.|-.+|+||.
T Consensus 160 K~~~~~~ev~~~e~~~~~a-~~~fe~Is~~~k~El~rFe 197 (234)
T cd07664 160 KLQQAKDEIKEWEAKVQQG-ERDFEQISKTIRKEVGRFE 197 (234)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4554555554443321111 1245556667777888873
No 260
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=44.92 E-value=2.3e+02 Score=25.36 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 002752 119 KAKSETRDWLNNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 119 keK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
........+|...|..+..+++.++.+++.+.
T Consensus 48 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r 79 (123)
T PF02050_consen 48 RNYQRYISALEQAIQQQQQELERLEQEVEQAR 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888999999999999999988863
No 261
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=44.82 E-value=4.2e+02 Score=28.39 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhhhhhhhHHHHHHH
Q 002752 159 PRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLEDYVE 207 (885)
Q Consensus 159 ~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ld-pe~V~~IKddIeyYVE 207 (885)
.|.+.-...+.|...|+.+|+..+. ++... -..+.+|++.|+.++.
T Consensus 143 ~R~erE~~i~krl~e~~~~l~~~i~---~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 143 EREEREENILKRLEEEENRLQEKIE---KEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566677777777665544 33322 3556678888887775
No 262
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.52 E-value=4.7e+02 Score=28.86 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhc
Q 002752 127 WLNNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 127 wL~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
=|+.-|+.+++++..+|.|+..|.
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~ 116 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777776664
No 263
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=44.44 E-value=6.3e+02 Score=30.26 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 18 VQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTW 65 (885)
Q Consensus 18 V~EGve~Fd~iyeK~~~a~n-~nQKEKlE~DLKKEIKKLQR~RDQIKtW 65 (885)
+.|-+..|+++...+..... ..--+.+-...+.+|..|++-=..++.+
T Consensus 225 ~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~ 273 (582)
T PF09731_consen 225 VQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEE 273 (582)
T ss_pred HHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777666655444 3445666666777777776533334444
No 264
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=44.22 E-value=83 Score=27.55 Aligned_cols=58 Identities=28% Similarity=0.447 Sum_probs=43.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (885)
.|+.+||+=. ||.+|.+..-.+| ++.+...+...+..|..--.||.-||++|..+...
T Consensus 5 ~L~~~i~~E~-ki~~Gae~m~~~~----~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 5 ELQKKIDKEL-KIKEGAENMLQAY----STDKKKVLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHH----CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHH----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666553 6889998888877 33333358899999999999999999999887654
No 265
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=44.21 E-value=5.8e+02 Score=31.92 Aligned_cols=152 Identities=20% Similarity=0.217 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHH-HHHHhhhccccchhhHHHHHHHHH-HHH
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYR-DQIKTWIQSSEIKDKKALVDARKL-IER 86 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~R-DQIKtW~~s~dIKDK~~L~e~RK~-IE~ 86 (885)
.|+||++|-|.|-|..=.++-.-+.+ |-.-.+|=-+-||.|. |-|-+-...+||-=...|.|.-.+ ++.
T Consensus 27 ~el~~tnkfik~~ikdg~~li~a~kn---------ls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~v 97 (812)
T KOG1451|consen 27 VELDRTNKFIKELIKDGKELISALKN---------LSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQV 97 (812)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH---------HHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHH
Confidence 68899999888876554443333221 1122222233344433 222233333444444466664443 344
Q ss_pred HHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh---ccccCCCCchhhHH
Q 002752 87 EMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL---TVKKGKTRPPRLTH 163 (885)
Q Consensus 87 ~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L---~~KK~K~~~~r~~~ 163 (885)
+=||-+.| .+..|.|. .|.|+=|.|.+.++++.-....+.-|.|=.-+|+- +.|| ..+=+-++
T Consensus 98 e~er~~~v-------~~Ase~li-----~PlekFRkEqIG~~KE~KkKydKe~ekfy~~LekHLhLSskk--esqlqeAD 163 (812)
T KOG1451|consen 98 EDERMRMV-------GNASESLI-----EPLEKFRKEQIGTLKEEKKKYDKESEKFYQTLEKHLHLSSKK--ESQLQEAD 163 (812)
T ss_pred HHHHHHHH-------hhhHHHHH-----hHHHHHHHHHhhhhHHHHhhhhhhhHHHHHHHHHHhccccch--hhHHHHHH
Confidence 44554444 44455553 56777676666555555554555555555555542 2233 33335556
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002752 164 LETSITRHKAHIMKLELILR 183 (885)
Q Consensus 164 le~~ieRhk~Hi~kLE~lLR 183 (885)
++--.+||+|...-|+-+..
T Consensus 164 ~Qvd~~r~nFfe~SL~YV~~ 183 (812)
T KOG1451|consen 164 AQVDTQRKNFFEASLQYVAE 183 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66667899999999988765
No 266
>PF08376 NIT: Nitrate and nitrite sensing; InterPro: IPR013587 The nitrate and nitrite-sensing (NIT) domain is a (~250 aa) sensor domain found in various receptor components of signal transduction pathways from different bacterial lineages []. The NIT domain is predicted to be all alpha-helical in structure []. Proteins containing a NIT domain belong to one of four known classes of prokaryotic signal transduction proteins: intracellular transcription anti-termination regulators, sensor histidine kinases, methyl-accepting chemotaxis proteins, diguanylate cyclases/phosphodiesterases. NIT-containing receptors regulate cellular functions such as gene expression (transcription anti-terminators and histidine kinases), cell motility (chemotaxis receptors), and enzyme activity (diguanylate cyclases/phosphodiesterases), in response to changes in nitrate and/or nitrite concentrations. The NIT domain is found as both an extracellular and an intracellular sensor. The NIT domain can be found in combination with other signalling domains, such as ANTAR, HAMP (IPR003660 from INTERPRO), MCP, Hemerythrins (IPR002063 from INTERPRO), CHASE (IPR006189 from INTERPRO), GGDEF (IPR000160 from INTERPRO), PAS (IPR000014 from INTERPRO), EAL (IPR001633 from INTERPRO), HK (IPR005467 from INTERPRO), GAF, REC and Hpt (IPR008207 from INTERPRO).; PDB: 4AKK_A.
Probab=44.13 E-value=1.4e+02 Score=30.44 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHH-HHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 002752 16 KKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLK-KEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKIC 94 (885)
Q Consensus 16 KKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLK-KEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~v 94 (885)
.++.+-+..++..++.+...-...++..|+.-+. ..+++++++|++|-.=-.... -.+-.-.++.+.....++.++.|
T Consensus 157 ~~~~~~~~~~~~~l~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~W~~~~t~~id~l~~v 235 (247)
T PF08376_consen 157 RQFASLIARQRAALESFQAAASPEQRALYDALLSSPAVQRVQRLRDQILSNGPGGG-LSPIDAEEWFAAATARIDALRQV 235 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHS-----HHHHHHHHHHHCS----S--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccCCC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555566778888888777 789999999999877333111 23356688999999999999999
Q ss_pred Hhhh
Q 002752 95 EKET 98 (885)
Q Consensus 95 EKe~ 98 (885)
|...
T Consensus 236 e~~l 239 (247)
T PF08376_consen 236 EDRL 239 (247)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 267
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.11 E-value=2.1e+02 Score=36.31 Aligned_cols=165 Identities=16% Similarity=0.166 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 002752 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKI 93 (885)
Q Consensus 14 ~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~ 93 (885)
+|..+.-.|+.|+++---++. --|.|+.||-|--|=|-...-.. ....|..+.-.||.+-.---|.|-
T Consensus 230 ~~S~~~t~v~~F~DLe~A~e~----------V~~~K~Qi~~L~PLV~~~~r~e~--~~~S~~~~~A~k~aL~~~~~~iK~ 297 (1104)
T COG4913 230 TFSIAKTAVEQFQDLEGAYEQ----------VEDIKRQIHTLDPLVQLKNRREK--AQQSKDHANALKKALPTVGNRIKK 297 (1104)
T ss_pred chhHHHHHHHHHHhHHHHHHH----------HHHHHHHHhhhhHHHHHHHHHHH--HHHhHHHHHHHHhhhhHHHHHHhH
Confidence 456677777888775332211 13667777766332221100000 001123444455555555555566
Q ss_pred HHhhhccccccccccCCCCCCCchHHHHHHHHH---HHHHHHH-HHHHHHHhHHHHhhhhccccC---------------
Q 002752 94 CEKETKTKAFSKEGLGQQPKTDPKEKAKSETRD---WLNNLVS-ELESQIDSFEAELEGLTVKKG--------------- 154 (885)
Q Consensus 94 vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~---wL~~~Id-eL~~QiE~~EaEiE~L~~KK~--------------- 154 (885)
-|.++...+|.-|.-.+..|+.-.+.++..+++ -+.+.+. ---.|.+.+-+++|.+-.||.
T Consensus 298 E~~~~~v~~~t~E~tQ~~~~ve~~~~e~~~A~~~~T~~~~~vk~~~G~~~~~LsA~~E~~~~~r~~~~~~~~~~~aLv~~ 377 (1104)
T COG4913 298 EEQETLVRQFTVEQTQAKSKVESAKIETDRAREMETLAHDNVKQIVGAQHGILSAKREGAVDKRRTISTARAGLDALVKG 377 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 666666666665554333333322222222222 2222221 123466777777777643321
Q ss_pred --CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 002752 155 --KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDEL 190 (885)
Q Consensus 155 --K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~l 190 (885)
-..++-.+++-+...+-+.|+..+--....|+|+.-
T Consensus 378 l~~aAP~~A~~~L~~~~~~~~~~dE~~AA~E~L~~~~~ 415 (1104)
T COG4913 378 LGGAAPESAEELLELNNAARLTVDEYPAAREALESAGQ 415 (1104)
T ss_pred ccCCCcccHHHHHHHHHHHHHhHhhhHHHHHHHHhccc
Confidence 112445556666778889999999999999998764
No 268
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=43.53 E-value=3.8e+02 Score=31.20 Aligned_cols=99 Identities=22% Similarity=0.418 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 002752 14 VLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKI 93 (885)
Q Consensus 14 ~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~ 93 (885)
++.|+.+-++-|+++-..|.+.+--+--++| ..|-||+.+|+..-+-++.|... +..++-.|+
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~-~~lske~a~l~~iv~~~~~~~~~----------------~~~l~~a~~ 67 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDPEVISDPDEY-RKLSKEYAELEPIVEKYREYKKA----------------QEDLEDAKE 67 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHH-HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH
Confidence 5678888888888888888776533323333 35677788888766666655322 122222222
Q ss_pred HHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 002752 94 CEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 94 vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
+ |. ...|| |+++..+.=|.+|+.+++.+|.++.-|-
T Consensus 68 ~-------------l~--~~~D~------em~ema~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 68 M-------------LA--EEKDP------EMREMAEEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred H-------------Hh--ccCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 11 11344 4555566678899999999999998874
No 269
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=43.41 E-value=6.7e+02 Score=31.32 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 002752 74 KKALVDARKLIEREMERFKICEKETKTK 101 (885)
Q Consensus 74 K~~L~e~RK~IE~~MErFK~vEKe~KtK 101 (885)
-+.|.|+.+.|....+++.+++|..|..
T Consensus 144 ~~~l~e~~~rl~~~~~~~q~~~R~a~~~ 171 (632)
T PF14817_consen 144 RRILREYTKRLQGQVEQLQDIQRKAKVE 171 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 3478899999999999999999987765
No 270
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=43.08 E-value=4e+02 Score=27.55 Aligned_cols=53 Identities=25% Similarity=0.436 Sum_probs=33.2
Q ss_pred CchhhHHHHHHHHHHHHHH----HHHHHHHHhhhCCC--CChhhhhhhhhHHHHHHHhC
Q 002752 157 RPPRLTHLETSITRHKAHI----MKLELILRLLDNDE--LSPEQVNDVKDLLEDYVERN 209 (885)
Q Consensus 157 ~~~r~~~le~~ieRhk~Hi----~kLE~lLRlL~N~~--ldpe~V~~IKddIeyYVE~n 209 (885)
+.+|++.++.-|+...-++ .++|.|-..+..+- .+-+.+.++|+.|..|++..
T Consensus 161 ~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~ 219 (236)
T PF09325_consen 161 RQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQ 219 (236)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777766665555554 34444544444432 45778888999999988754
No 271
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=43.06 E-value=7.6e+02 Score=30.84 Aligned_cols=137 Identities=22% Similarity=0.224 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHhhhcc-----ccchhhH-HHHHHHHHHHHHHHHHHHHHhh------hcccccc-
Q 002752 39 NQKEKFEADLKKEIKKLQR-YRDQIKTWIQS-----SEIKDKK-ALVDARKLIEREMERFKICEKE------TKTKAFS- 104 (885)
Q Consensus 39 nQKEKlE~DLKKEIKKLQR-~RDQIKtW~~s-----~dIKDK~-~L~e~RK~IE~~MErFK~vEKe------~KtKafS- 104 (885)
+|||+.=..|-.+|+.+|. +++-+-+|.+- .+.|.|. .|.+.++ +.+.|+++|.. -|.--|+
T Consensus 288 ~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~----kL~~~sDYeeIK~ELsiLk~ief~~ 363 (629)
T KOG0963|consen 288 NQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKE----KLNSRSDYEEIKKELSILKAIEFGD 363 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhccHHHHHHHHHHHHHhhcCC
Confidence 3466666666666666553 33444444332 2222221 2333322 33444555432 2223344
Q ss_pred ccccCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002752 105 KEGLGQQP-KTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 183 (885)
Q Consensus 105 kEGL~~~~-k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLR 183 (885)
.++-...+ ...+.|.--.+....|.+-.-.|+.+...+.-++..+. .+.+++.....--+.-|.+||.=|+
T Consensus 364 se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~--------~~~~el~~~~~~~ke~i~klE~dl~ 435 (629)
T KOG0963|consen 364 SEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELS--------KKGEELEAKATEQKELIAKLEQDLL 435 (629)
T ss_pred cccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHH--------hhhhhhHHHHHHHHHHHHHHHhhHh
Confidence 33333321 12233433344455566666666666665555554441 2345566666666667777777666
Q ss_pred hhhC
Q 002752 184 LLDN 187 (885)
Q Consensus 184 lL~N 187 (885)
-+++
T Consensus 436 ~~~~ 439 (629)
T KOG0963|consen 436 KVQV 439 (629)
T ss_pred hccc
Confidence 5544
No 272
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=42.96 E-value=4.6e+02 Score=28.21 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhcCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHh-h-hccccchh---hHHHHHHHHHHHHHHHHHH
Q 002752 20 EGVDVFDSIWNKVYDTDN--ANQKEKFEADLKKEIKKLQRYRDQIKT-W-IQSSEIKD---KKALVDARKLIEREMERFK 92 (885)
Q Consensus 20 EGve~Fd~iyeK~~~a~n--~nQKEKlE~DLKKEIKKLQR~RDQIKt-W-~~s~dIKD---K~~L~e~RK~IE~~MErFK 92 (885)
.|++.+...++.+..... .++=+..+..|..|...-+++|.+..+ | ...++.-. +..|..+|+.++.+.+-.+
T Consensus 22 ~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~ 101 (296)
T PF13949_consen 22 GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDS 101 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345555555555543332 334677888999999999999999864 5 33333322 2367777777776655444
Q ss_pred HH
Q 002752 93 IC 94 (885)
Q Consensus 93 ~v 94 (885)
.|
T Consensus 102 ~~ 103 (296)
T PF13949_consen 102 QL 103 (296)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 273
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=42.93 E-value=29 Score=39.60 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 002752 47 DLKKEIKKLQRYRDQIKTWIQS 68 (885)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s 68 (885)
|+||.++ ..+|++.++|---
T Consensus 51 ~~Kk~~~--~qLrE~~et~~KE 70 (370)
T PF02994_consen 51 DFKKDFK--NQLREQDETPEKE 70 (370)
T ss_dssp ----------------------
T ss_pred HhhhhhH--HHHHHhhhhhhhh
Confidence 3455444 3468888887653
No 274
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=42.78 E-value=2.4e+02 Score=24.95 Aligned_cols=56 Identities=23% Similarity=0.490 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCChh--hHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNAN--QKEKFEADLKKEIKKL-QRYRDQIKTW 65 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~n--QKEKlE~DLKKEIKKL-QR~RDQIKtW 65 (885)
.||...+.+|.+-|+.+...+.++....... -+++++ +|-.||++| +.++..||.-
T Consensus 10 ~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~-~l~~~i~~~~~~~~~~lk~l 68 (103)
T PF00804_consen 10 QEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELD-ELTDEIKQLFQKIKKRLKQL 68 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999888843 233332 333344333 4455555543
No 275
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.77 E-value=4.5e+02 Score=34.30 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 002752 159 PRLTHLETSITRHKAHIMKLELILRLLDNDEL 190 (885)
Q Consensus 159 ~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~l 190 (885)
+.+-+....|-+.+.-+.+|.-.|+.+.+...
T Consensus 518 et~yDrdqTI~KfRelva~Lqdqlqe~~dq~~ 549 (1243)
T KOG0971|consen 518 ETVYDRDQTIKKFRELVAHLQDQLQELTDQQE 549 (1243)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44555666777777778888777777766443
No 276
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=42.76 E-value=4.7e+02 Score=28.30 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=36.1
Q ss_pred HhHHHHhhhh-ccccCCCCchhhHHHHHHH--HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002752 140 DSFEAELEGL-TVKKGKTRPPRLTHLETSI--TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 208 (885)
Q Consensus 140 E~~EaEiE~L-~~KK~K~~~~r~~~le~~i--eRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~ 208 (885)
+.+++-+|+- +..|+| ++..+++++..+ +|..|+...|+.|+++= .|..-.--+|-+-|--|+..
T Consensus 121 e~y~~aleK~l~l~~~k-k~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~---~vq~kKkfefle~ll~~~~A 188 (207)
T cd07634 121 EKYYSILEKHLNLSAKK-KESHLQRADTQIDREHQNFYEASLEYVFKIQ---EVQEKKKFEFVEPLLAFLQG 188 (207)
T ss_pred hHHHHHHHHHHhccccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3344444442 233333 345666666655 78999999999999742 12222223455555555543
No 277
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=42.63 E-value=8.2 Score=47.09 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHhhh
Q 002752 129 NNLVSELESQIDSFEAELEG 148 (885)
Q Consensus 129 ~~~IdeL~~QiE~~EaEiE~ 148 (885)
..-|+++++||..++.++..
T Consensus 362 ~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 362 KSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444
No 278
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=42.52 E-value=2.2e+02 Score=34.15 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 002752 128 LNNLVSELESQID 140 (885)
Q Consensus 128 L~~~IdeL~~QiE 140 (885)
|.++..+|+...+
T Consensus 282 l~d~~~~l~~~~~ 294 (563)
T TIGR00634 282 VEEATRELQNYLD 294 (563)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 279
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=42.50 E-value=1.9e+02 Score=36.19 Aligned_cols=165 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccch-----------------
Q 002752 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK----------------- 72 (885)
Q Consensus 10 EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIK----------------- 72 (885)
|+-+....|...-..=+.+..-+++-...++. |-+.|.-==.+|++-+|.|+.-+..+|..
T Consensus 514 elKk~qedi~~~k~qee~~~kqie~Lee~~~~--Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~ 591 (786)
T PF05483_consen 514 ELKKQQEDINNSKKQEEKMLKQIENLEETNTQ--LRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKI 591 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchH--------------HHHHHHHHHHHHHHHHHHHH
Q 002752 73 DKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKE--------------KAKSETRDWLNNLVSELESQ 138 (885)
Q Consensus 73 DK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~e--------------keK~E~~~wL~~~IdeL~~Q 138 (885)
....+...||.||..--++..+.++- |++-|.+.....++.-.+ +...|..+-+..=|+.=...
T Consensus 592 lenk~~~LrKqvEnk~K~ieeLqqeN--k~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~ 669 (786)
T PF05483_consen 592 LENKCNNLRKQVENKNKNIEELQQEN--KALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSIS 669 (786)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q ss_pred HHhHHHHhhhh------ccccCCCC----chhhHHHHHHHHHHHHHHHHH
Q 002752 139 IDSFEAELEGL------TVKKGKTR----PPRLTHLETSITRHKAHIMKL 178 (885)
Q Consensus 139 iE~~EaEiE~L------~~KK~K~~----~~r~~~le~~ieRhk~Hi~kL 178 (885)
-+.+..|++++ .+|-.+-. +.+|++.-+++++|+.|..|+
T Consensus 670 e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDki 719 (786)
T PF05483_consen 670 EEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKI 719 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
No 280
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=42.46 E-value=93 Score=34.54 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 189 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ 189 (885)
..+-+-..|++++.++|.+|.++..... +..-.++-+|++.+-+.+-++.-+-.+++.|....
T Consensus 148 i~d~~~~~le~i~~~~~~ie~~l~~~~~---~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~ 210 (322)
T COG0598 148 IVDNYFPVLEQIEDELEAIEDQLLASTT---NEELERLGELRRSLVYLRRALAPLRDVLLRLARRP 210 (322)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcCcc---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 3444455666666666666666543211 12335888899988888888887666665555554
No 281
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=42.41 E-value=2.9e+02 Score=32.17 Aligned_cols=124 Identities=15% Similarity=0.319 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhH-HHHHHHHH
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNK----VYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK-ALVDARKL 83 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK----~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~-~L~e~RK~ 83 (885)
.|++-+++.++|.++.-+..+++ +.+ .......+-..+++.+..|..+-..+..-+.. +++-. .+.+.+-.
T Consensus 251 ~El~~V~~el~~~~~~~~~~~~~~~k~l~~--~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~--~~~~~~~~~~~~~~ 326 (412)
T PF04108_consen 251 QELPDVVKELQERLDEMENNEERTKKLLQS--QRDHIRELYNALSEALEELRKFGERLPSYLAA--FHDFEERWEEEKES 326 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 58888999999999888888887 542 12234444455555555555554433333322 11211 22233334
Q ss_pred HHHHHHHHHHHHhh-hc-cccccccccCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002752 84 IEREMERFKICEKE-TK-TKAFSKEGLGQQPKTDPKEK-AKSETRDWLNNLVSELESQIDSFEAE 145 (885)
Q Consensus 84 IE~~MErFK~vEKe-~K-tKafSkEGL~~~~k~DP~ek-eK~E~~~wL~~~IdeL~~QiE~~EaE 145 (885)
|+..|+.++.+-.- .. -.+|.+ |.. |- -|..+++.++..+..++.+++.+..|
T Consensus 327 i~~~~~~l~~L~~~Y~~F~~aY~~--LL~-------Ev~RRr~~~~k~~~i~~~~~eeL~~l~ee 382 (412)
T PF04108_consen 327 IQAYIDELEQLCEFYEGFLSAYDS--LLL-------EVERRRAVRDKMKKIIREANEELDKLREE 382 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444443111 00 124444 432 33 34557888899999998888877655
No 282
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=42.10 E-value=4.4e+02 Score=27.77 Aligned_cols=77 Identities=25% Similarity=0.385 Sum_probs=45.0
Q ss_pred HHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHH----HHHHHHHHHhhhCCC--CChhhhhhhhhHHHHH
Q 002752 132 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAH----IMKLELILRLLDNDE--LSPEQVNDVKDLLEDY 205 (885)
Q Consensus 132 IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~H----i~kLE~lLRlL~N~~--ldpe~V~~IKddIeyY 205 (885)
...++..++...+.+++|.. .+|.+.+|+..++.-|+...-. ..+.|.|-..+..+- .+-+.+.++|+-|+.|
T Consensus 117 ~~~~~~~L~k~~~~~~Kl~~-~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~ 195 (216)
T cd07627 117 WQSAESELSKKKAQLEKLKR-QGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIY 195 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666532 1233456666666655433222 235555555555443 3578899999999999
Q ss_pred HHhC
Q 002752 206 VERN 209 (885)
Q Consensus 206 VE~n 209 (885)
+++-
T Consensus 196 ~e~~ 199 (216)
T cd07627 196 LESA 199 (216)
T ss_pred HHHH
Confidence 9854
No 283
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=42.10 E-value=5.4e+02 Score=31.14 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHH---HHHHHHhhcCCChh--hHHHHH
Q 002752 9 GEIDRVLKKVQEGVDVF---DSIWNKVYDTDNAN--QKEKFE 45 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~F---d~iyeK~~~a~n~n--QKEKlE 45 (885)
+|.+++||+=-|.++.| .+.-+|++-+...- ++|++-
T Consensus 189 qe~~~ll~~Rve~le~~Sal~~lq~~L~la~~~~~~~~e~~i 230 (554)
T KOG4677|consen 189 QEVRRLLKGRVESLERFSALRSLQDKLQLAEEAVSMHDENVI 230 (554)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 68999999999999999 78888888766544 355543
No 284
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=41.79 E-value=3.6e+02 Score=35.06 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHhHHHHhhh
Q 002752 85 EREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSE-TRDWLNNLVSELESQIDSFEAELEG 148 (885)
Q Consensus 85 E~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E-~~~wL~~~IdeL~~QiE~~EaEiE~ 148 (885)
+.+||+-|. +|-+|.|+ .+|+.+.| ....|+..|++..+=-+.++...|+
T Consensus 1100 kkr~e~ik~-~~~~kdK~-------------e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~ 1150 (1189)
T KOG1265|consen 1100 KKRMEDIKV-DKVIKDKA-------------ERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQ 1150 (1189)
T ss_pred HHHHHhhhh-ccccccHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777766 55555553 23444444 4556666666665554544444333
No 285
>PF13166 AAA_13: AAA domain
Probab=41.78 E-value=7.2e+02 Score=30.21 Aligned_cols=67 Identities=24% Similarity=0.338 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 002752 74 KKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 74 K~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
...|......+...++..+..=.+-+...|....+.. . .+...-|...|++++..|+.+...++.+.
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~---~-------~~~~~~l~~~i~~~n~~i~~~n~~~~~~~ 390 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALEKKIKNPSSPIELEE---I-------NEDIDELNSIIDELNELIEEHNEKIDNLK 390 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc---h-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554432234456666555421 0 11224566666666666666666666664
No 286
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=41.78 E-value=90 Score=29.33 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhhCCCCChhhhhhhhhHH
Q 002752 164 LETSITRHKAHIMK-LELILRLLDNDELSPEQVNDVKDLL 202 (885)
Q Consensus 164 le~~ieRhk~Hi~k-LE~lLRlL~N~~ldpe~V~~IKddI 202 (885)
++..+++-.-.+.+ ++.|-|+|+++.|.++.+++++-.+
T Consensus 48 m~Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~del~~R~ 87 (93)
T cd00238 48 MEKILEKGEDYVEKELARLERLLEKKGLAPEKADELTRRL 87 (93)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 33444444445554 8889999999999999999986543
No 287
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.64 E-value=1.7e+02 Score=30.95 Aligned_cols=92 Identities=23% Similarity=0.338 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccch-h-hHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHH
Q 002752 43 KFEADLKKEIKKLQRYRDQIKTWIQSSEIK-D-KKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120 (885)
Q Consensus 43 KlE~DLKKEIKKLQR~RDQIKtW~~s~dIK-D-K~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~eke 120 (885)
=||--++.=-|---|+|+|+|.-...+-+- + +.+|.-+-..|-..||-|.-. ++-|+-..-..+.+.-|+..
T Consensus 99 yLE~smqaF~~qQs~lreq~~~~~~~~~~~~~~~~p~~~~eeq~rrn~~mf~~a-----M~~f~pf~~~pa~~~~~~~~- 172 (193)
T COG5394 99 YLEHSMQAFSDQQSRLREQMKKAFGGNPLGPNMATPLQMWEEQIRRNMEMFQQA-----MQMFSPFAKAPAPKEAPKPM- 172 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchHHHHHHHHHHhHHHHHHH-----HHhcCcccCCCCccccCccc-
Confidence 356666666667789999999999987765 3 457777777788888887543 34455444433233222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 002752 121 KSETRDWLNNLVSELESQIDSFEAELEG 148 (885)
Q Consensus 121 K~E~~~wL~~~IdeL~~QiE~~EaEiE~ 148 (885)
.+-|++|..|+..+...+++
T Consensus 173 --------~~d~~~lk~ql~a~Q~kldk 192 (193)
T COG5394 173 --------SDDLDELKGQLRAMQPKLDK 192 (193)
T ss_pred --------hhHHHHHHHHHHHhhhhhcc
Confidence 23467777777766655443
No 288
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=41.36 E-value=5.2e+02 Score=28.40 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=50.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKL 83 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n-~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~ 83 (885)
.-|+.||+.=||+.-+.+-.|-.--.--.+... ...-=+|=+-|++|++.++..+.+++.-...-+ ++...|-..
T Consensus 39 ~~L~~eiE~~Lk~KC~~Lls~~~p~~~~~s~~l~~ak~~~L~~~l~~ek~~~~~~k~~~~e~~~~l~----~q~~~y~~v 114 (238)
T PF14735_consen 39 QRLPREIEERLKKKCFSLLSYHQPDSESSSEGLKAAKSWQLPELLREEKQRLEKEKAQLRELLVLLE----RQFATYYQV 114 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccccchhhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 458899999999998888777542221111111 223457888999999999999888776543222 234444444
Q ss_pred HHHHHHH
Q 002752 84 IEREMER 90 (885)
Q Consensus 84 IE~~MEr 90 (885)
+++.++.
T Consensus 115 L~~cl~~ 121 (238)
T PF14735_consen 115 LLQCLQL 121 (238)
T ss_pred HHHHHHH
Confidence 4444444
No 289
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=41.15 E-value=4.2e+02 Score=29.12 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=21.3
Q ss_pred HHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 002752 133 SELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL 180 (885)
Q Consensus 133 deL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~ 180 (885)
+..+.+++..+..+..+. ......++..++..+++.+..+.+++.
T Consensus 155 ~~a~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~a~~ 199 (331)
T PRK03598 155 DQAQATLKSAQDKLSQYR---EGNRPQDIAQAKASLAQAQAALAQAEL 199 (331)
T ss_pred HHHHHHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544432 112234555555566555555544443
No 290
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=41.04 E-value=1.4e+02 Score=32.65 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=51.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHH----HHHHHhhhcc--cc-----chhhH
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRY----RDQIKTWIQS--SE-----IKDKK 75 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~----RDQIKtW~~s--~d-----IKDK~ 75 (885)
-+.||||+..|+.-.-+.|....+++... +.+|+.+++.-.+++|++ -+.+|.+|.. +. +.+-.
T Consensus 155 t~k~leK~~~k~~ka~~~Y~~~v~~l~~~-----~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~ 229 (269)
T cd07673 155 TQREIEKAAVKSKKATESYKLYVEKYALA-----KADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQIGQ 229 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 46788888888888888888777777533 558899999988888876 3456666644 22 22334
Q ss_pred HHHHHHHHHHH
Q 002752 76 ALVDARKLIER 86 (885)
Q Consensus 76 ~L~e~RK~IE~ 86 (885)
.+.+-|+.||.
T Consensus 230 ~~e~ir~~le~ 240 (269)
T cd07673 230 VHEEFINNMAN 240 (269)
T ss_pred HHHHHHHHHHh
Confidence 56666666653
No 291
>PRK07737 fliD flagellar capping protein; Validated
Probab=40.98 E-value=7.1e+02 Score=29.87 Aligned_cols=28 Identities=18% Similarity=0.512 Sum_probs=23.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYD 34 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~ 34 (885)
+..+.|.+.++|.+=|+.|+.+.+.+..
T Consensus 266 V~~D~~~~~~~i~~FV~aYN~l~~~i~~ 293 (501)
T PRK07737 266 VATDVDGIFNKIKDFVDKYNELIDKINA 293 (501)
T ss_pred EecChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999888765
No 292
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=40.89 E-value=4e+02 Score=28.23 Aligned_cols=119 Identities=27% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHH
Q 002752 46 ADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETR 125 (885)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~ 125 (885)
.+|=.+|+||| +.+-|..++.-|+.|..+|+ =+|.=.-|.. +=.+.....
T Consensus 53 ~~l~e~v~~l~--------------------idd~~~~f~~~~~tl~~LE~----~GFnV~~l~~------RL~kLL~lk 102 (190)
T PF05266_consen 53 ANLAEKVKKLQ--------------------IDDSRSSFESLMKTLSELEE----HGFNVKFLRS------RLNKLLSLK 102 (190)
T ss_pred HHHHHHHHHcc--------------------cCCcHHHHHHHHHHHHHHHH----cCCccHHHHH------HHHHHHHHH
Q ss_pred H---HHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHH
Q 002752 126 D---WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLL 202 (885)
Q Consensus 126 ~---wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddI 202 (885)
+ =+.+....|..+++.-+++..++ ...+.+|+..|..+++|...|.......+ .+|..+|-++
T Consensus 103 ~~~~~~~e~~k~le~~~~~~~~~~~~~--------e~~i~~Le~ki~el~~~~~~~~~~ke~~~------~ei~~lks~~ 168 (190)
T PF05266_consen 103 DDQEKLLEERKKLEKKIEEKEAELKEL--------ESEIKELEMKILELQRQAAKLKEKKEAKD------KEISRLKSEA 168 (190)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q ss_pred HHHHHh
Q 002752 203 EDYVER 208 (885)
Q Consensus 203 eyYVE~ 208 (885)
+.+.+.
T Consensus 169 ~~l~~~ 174 (190)
T PF05266_consen 169 EALKEE 174 (190)
T ss_pred HHHHHH
No 293
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=40.88 E-value=5e+02 Score=28.07 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=27.4
Q ss_pred hhHHHHHHH--HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002752 160 RLTHLETSI--TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 207 (885)
Q Consensus 160 r~~~le~~i--eRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE 207 (885)
-+++....+ .|+.||-..|+.++.+= .|..-.--+|-|-|=-||.
T Consensus 141 e~~EA~~~l~~~r~~F~~~sLdYv~qin---~lQ~rKKfe~le~ll~~m~ 187 (207)
T cd07635 141 QLQEADVQVEQNRQHFYELSLEYVCKLQ---EIQERKKFECVEPMLSFFQ 187 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 455555544 89999999999998642 1222233345555555554
No 294
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.65 E-value=90 Score=28.33 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHH
Q 002752 51 EIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNN 130 (885)
Q Consensus 51 EIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~ 130 (885)
.|.|+++++.++..-... ...|....+.++..++.-..++-+ ++-|=.-|=+- -...+.++..-|..
T Consensus 3 ~~~~~~~l~~~l~~~~~q-----~~~l~~~~~~~~~~~~eL~~l~~~--~~~y~~vG~~f------v~~~~~~~~~~L~~ 69 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQ-----IQQLERQLRELELTLEELEKLDDD--RKVYKSVGKMF------VKQDKEEAIEELEE 69 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTSSTT---EEEEEETTEE------EEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCCCc--chhHHHHhHHH------HHhhHHHHHHHHHH
Confidence 355666666666532211 123444444444444444444444 45565555432 12234445444444
Q ss_pred HHHHHHHHHHhHHHHhhh
Q 002752 131 LVSELESQIDSFEAELEG 148 (885)
Q Consensus 131 ~IdeL~~QiE~~EaEiE~ 148 (885)
-++.|...|+.++..++.
T Consensus 70 ~~~~~~~~i~~l~~~~~~ 87 (106)
T PF01920_consen 70 RIEKLEKEIKKLEKQLKY 87 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 295
>PRK11281 hypothetical protein; Provisional
Probab=40.53 E-value=1e+03 Score=31.67 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccch-hhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002752 44 FEADLKKEIKKLQRYRDQIKTWIQSSEIK-DKKALVDARKLIEREMERFKICEKETKT 100 (885)
Q Consensus 44 lE~DLKKEIKKLQR~RDQIKtW~~s~dIK-DK~~L~e~RK~IE~~MErFK~vEKe~Kt 100 (885)
||..|...-.-||....++-+|=+. +- --.....++..|.+...|=.++++.-+.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~Nsq--Li~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQ--LVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7777777777777777776666211 11 1124555666667777777777776655
No 296
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=40.46 E-value=2.2e+02 Score=23.94 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-ccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 122 SETRDWLNNLVSELESQIDSFEAELEGLTV-KKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 185 (885)
Q Consensus 122 ~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~-KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL 185 (885)
.++..-|....++|+.+++.++..++.|.. =+|.....=.+..+.+.....-.+..|+.+.+.|
T Consensus 10 ~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l 74 (86)
T PF06013_consen 10 RAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQAL 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888899999999999999999843 2455443222333344444444455555444433
No 297
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=40.41 E-value=3.1e+02 Score=25.57 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHH
Q 002752 42 EKFEADLKKEIKKLQ 56 (885)
Q Consensus 42 EKlE~DLKKEIKKLQ 56 (885)
...-..|++||.+||
T Consensus 7 ~~~r~~LeqeV~~Lq 21 (88)
T PF14389_consen 7 HERRSALEQEVAELQ 21 (88)
T ss_pred hhHHHHHHHHHHHHH
Confidence 345678999999998
No 298
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.36 E-value=3e+02 Score=29.78 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=26.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcC----------CChhhHHHHHHHHHHHHHHHHHHHHH
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDT----------DNANQKEKFEADLKKEIKKLQRYRDQ 61 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a----------~n~nQKEKlE~DLKKEIKKLQR~RDQ 61 (885)
|+|..+-..+++|..+-+.|..-......+ .++.+-+|++..++|--.++++..|.
T Consensus 111 k~~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~e~~~~ve~ 176 (233)
T cd07649 111 DLRKQLASRYAAVEKARKALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDL 176 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566655555433333321 12223355555555555555555444
No 299
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=40.23 E-value=1.9e+02 Score=29.44 Aligned_cols=57 Identities=25% Similarity=0.521 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHhhhcc-ccchh---------hHHHHHHHHHHHHHHHHHHHHHhhh
Q 002752 42 EKFEADLKKEIKKL----QRYRDQIKTWIQS-SEIKD---------KKALVDARKLIEREMERFKICEKET 98 (885)
Q Consensus 42 EKlE~DLKKEIKKL----QR~RDQIKtW~~s-~dIKD---------K~~L~e~RK~IE~~MErFK~vEKe~ 98 (885)
+.||.+||+.|+++ ..+.+.|+..+.. +||-. ...|.+.|+.+++..|+..+.+..+
T Consensus 98 ~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~fd~~~ 168 (204)
T PF04740_consen 98 DFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRAFDQQS 168 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666555 4466667777776 55511 2367777888888777776666433
No 300
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=40.10 E-value=5.4e+02 Score=28.29 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002752 169 TRHKAHIMKLELILRLL 185 (885)
Q Consensus 169 eRhk~Hi~kLE~lLRlL 185 (885)
.+++..+..|+..|.+|
T Consensus 257 ~~~~~~l~~~~~~L~~l 273 (319)
T PF02601_consen 257 SQKRQRLERLEARLEAL 273 (319)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34444444444444433
No 301
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=39.96 E-value=9.5 Score=46.53 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 159 PRLTHLETSITRHKAHIMKLELILRLL 185 (885)
Q Consensus 159 ~r~~~le~~ieRhk~Hi~kLE~lLRlL 185 (885)
.++..|+..++..+.-..+||.-.+..
T Consensus 481 e~~~~L~~~Leda~~~~~~Le~~~~~~ 507 (713)
T PF05622_consen 481 EKLEELQSQLEDANRRKEKLEEENREA 507 (713)
T ss_dssp ---------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665555556666555543
No 302
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=39.94 E-value=1.2e+02 Score=36.49 Aligned_cols=60 Identities=30% Similarity=0.480 Sum_probs=41.4
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH--------HhHHH
Q 002752 74 KKALVD-ARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQI--------DSFEA 144 (885)
Q Consensus 74 K~~L~e-~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~Qi--------E~~Ea 144 (885)
|-.|.+ +||.|..-|..+-+.|. ++| +|+ .+|....+-++.++..|+++. |..++
T Consensus 255 kmrleekhr~rmd~VmkEW~~ae~--------------qaK-nPK-AekqalnqhFQ~~v~sLEee~a~erqqlvetH~~ 318 (615)
T KOG3540|consen 255 KMRLEEKHRKRMDKVMKEWEEAET--------------QAK-NPK-AEKQALNQHFQKTVSSLEEEAARERQQLVETHEA 318 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------------ccc-Cch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443 67888888888877776 233 376 677888888899999998773 45555
Q ss_pred Hhhhh
Q 002752 145 ELEGL 149 (885)
Q Consensus 145 EiE~L 149 (885)
-+|.+
T Consensus 319 RV~Am 323 (615)
T KOG3540|consen 319 RVEAM 323 (615)
T ss_pred HHHHH
Confidence 55554
No 303
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=39.90 E-value=1.8e+02 Score=25.50 Aligned_cols=54 Identities=7% Similarity=0.348 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh---cCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002752 10 EIDRVLKKVQEGVDVFDSIWNKVY---DTDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (885)
Q Consensus 10 EIDr~lKKV~EGve~Fd~iyeK~~---~a~n~nQKEKlE~DLKKEIKKLQR~RDQIK 63 (885)
+-.+++++|...|+..+++.+.|. ..-+++.|..|...|+.--..|.+++.+++
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455566666666666665554 222557788888777665555555555554
No 304
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=39.86 E-value=5e+02 Score=27.75 Aligned_cols=50 Identities=28% Similarity=0.389 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 002752 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEI 71 (885)
Q Consensus 10 EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dI 71 (885)
-+|.++++|..|+..=+++-+=+ ..|-.+|.+-=|-+.||- |.|....+.
T Consensus 6 G~~~l~~r~~~g~~~~~el~~f~------keRa~iE~eYak~L~kLa------k~~~~~~e~ 55 (239)
T cd07647 6 GFDTLLQRLKEGKKMCKELEDFL------KQRAKAEEDYGKALLKLS------KSAGPGDEI 55 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH------hccCCCCcc
Confidence 47899999999999988887755 347778888877777774 567766554
No 305
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=39.84 E-value=59 Score=32.04 Aligned_cols=67 Identities=24% Similarity=0.373 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhh
Q 002752 122 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQV 195 (885)
Q Consensus 122 ~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ld-pe~V 195 (885)
.|..-||.+.+ .|.+.+..++|.|...--| .|+++++..+++|--.|.-+=.|+|-+++|-|| |..+
T Consensus 14 ~el~P~l~d~~----~~~r~~~n~~e~L~~qedk---~~l~e~e~q~k~~l~~i~e~G~iird~d~glVDFpa~~ 81 (123)
T COG4911 14 RELLPWLRDRL----IQLRKIKNEIELLLVQEDK---YALQEYESQTKKILDEIIEKGIIIRDIDIGLVDFPAII 81 (123)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhcccccH---HHHHHHHHHHHHHHHHHHHcCceeeccccccccchhhh
Confidence 34555666655 4556677788888543322 478888888888888888888899999999998 5444
No 306
>PRK10869 recombination and repair protein; Provisional
Probab=39.83 E-value=3e+02 Score=33.27 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 122 SETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 122 ~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
.++..-|.++.++|+...+.++.+-+.|
T Consensus 271 ~~~~~~l~~~~~~l~~~~~~~~~dp~~l 298 (553)
T PRK10869 271 EEALIQIQEASDELRHYLDRLDLDPNRL 298 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHH
Confidence 3355567777777777776666554443
No 307
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.81 E-value=1.4e+02 Score=32.17 Aligned_cols=35 Identities=11% Similarity=0.362 Sum_probs=25.4
Q ss_pred HHHHHHHhhh--CCCCChhhhhhhhhHHHHHHHhCCC
Q 002752 177 KLELILRLLD--NDELSPEQVNDVKDLLEDYVERNQD 211 (885)
Q Consensus 177 kLE~lLRlL~--N~~ldpe~V~~IKddIeyYVE~nqd 211 (885)
.|-.-.|-|. ...|.-++|++|+|+++.|+|.+.+
T Consensus 108 AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~E 144 (218)
T KOG1655|consen 108 AMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADE 144 (218)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333344443 3578899999999999999987654
No 308
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=39.63 E-value=2.7e+02 Score=27.87 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=22.0
Q ss_pred HHhh-hccccchhhHHHHHHHHHHHHHHHHH
Q 002752 62 IKTW-IQSSEIKDKKALVDARKLIEREMERF 91 (885)
Q Consensus 62 IKtW-~~s~dIKDK~~L~e~RK~IE~~MErF 91 (885)
.|.| ++.-=.-.|+.|.++...|-.+||.+
T Consensus 25 wKGws~sD~M~vTrr~m~~A~~~v~kql~~v 55 (126)
T PF07889_consen 25 WKGWSFSDLMFVTRRSMSDAVASVSKQLEQV 55 (126)
T ss_pred ecCCchhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3555 44433447888999999999999886
No 309
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=39.50 E-value=2.3e+02 Score=32.89 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 002752 122 SETRDWLNNLVSELES 137 (885)
Q Consensus 122 ~E~~~wL~~~IdeL~~ 137 (885)
.||+.|..+...-+.+
T Consensus 137 ~Ea~~~a~~L~~mY~~ 152 (364)
T TIGR00020 137 TEAQDWASMLYRMYLR 152 (364)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666555443
No 310
>PRK11820 hypothetical protein; Provisional
Probab=39.43 E-value=3.5e+02 Score=30.34 Aligned_cols=110 Identities=15% Similarity=0.272 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHH
Q 002752 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAK 121 (885)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK 121 (885)
++|..||..-+.+|..+-++|+.-... .+.++|+.+.++|+.+- . ..|+ ..--
T Consensus 151 ~~L~~dl~~rl~~i~~~~~~i~~~~p~-------~~~~~~~rL~~rl~el~--~-----------------~~d~-~Rl~ 203 (288)
T PRK11820 151 AALKADLLQRLDAIEALVAKIEALAPE-------ILEEYRERLRERLEELL--G-----------------ELDE-NRLE 203 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchH-------HHHHHHHHHHHHHHHHH--h-----------------hcCH-HHHH
Confidence 467888888888888888888765544 78999999999998862 0 1243 2222
Q ss_pred HHHHHH-----HHHHHHHHHHHHHhHHHHhhhhccccCCC-------------------Cc----hhhHHHHHHHHHHHH
Q 002752 122 SETRDW-----LNNLVSELESQIDSFEAELEGLTVKKGKT-------------------RP----PRLTHLETSITRHKA 173 (885)
Q Consensus 122 ~E~~~w-----L~~~IdeL~~QiE~~EaEiE~L~~KK~K~-------------------~~----~r~~~le~~ieRhk~ 173 (885)
+|+.=| +++=|.-|+..++.|+.-++.-.. -||+ .. .-+-+++..||+-|.
T Consensus 204 qEval~adK~DI~EEi~RL~sHl~~f~~~L~~~~~-vGrkLDFL~QEm~RE~NTigSKs~~~~is~~vVe~K~elEkiRE 282 (288)
T PRK11820 204 QEVALLAQKADIAEELDRLKSHLKEFREILKKGGP-VGRKLDFLMQELNREANTLGSKSNDAEITNLVVELKVLIEQMRE 282 (288)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHHHhcCCC-CCcchhHHHHHHhHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence 333333 445577888888888888765321 1221 11 134556677777777
Q ss_pred HHHHHH
Q 002752 174 HIMKLE 179 (885)
Q Consensus 174 Hi~kLE 179 (885)
+|.++|
T Consensus 283 QVQNIE 288 (288)
T PRK11820 283 QVQNIE 288 (288)
T ss_pred HHhcCC
Confidence 777665
No 311
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=39.32 E-value=5.3e+02 Score=27.90 Aligned_cols=67 Identities=13% Similarity=0.267 Sum_probs=37.4
Q ss_pred HHhHHHHhhhhccccCCCCchhhHHHHHHH--HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002752 139 IDSFEAELEGLTVKKGKTRPPRLTHLETSI--TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 208 (885)
Q Consensus 139 iE~~EaEiE~L~~KK~K~~~~r~~~le~~i--eRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~ 208 (885)
.|.+++-+++...=.+|+++..+++.+..+ .|+.|+-..|+.++.+-. |..-.--+|.|-|--||..
T Consensus 120 se~~~~al~k~~~ls~k~K~~~~eEA~~~L~~~r~~F~~~sLdYV~qi~~---vq~rKkfefle~llsfm~a 188 (207)
T cd07636 120 TEKYCAVLEKHLNLSSKKKESQLHEADSQVDLVRQHFYEVSLEYVFKVQE---VQERKMFEFVEPLLAFLQG 188 (207)
T ss_pred hhHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344444444443222233445666666655 789999999999986421 2222333455555555543
No 312
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=39.28 E-value=84 Score=35.06 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-ccchhhH-HHHHHHHHHHHHHHHHH
Q 002752 42 EKFEADLKKEIKKLQRYRDQIKTWIQS-SEIKDKK-ALVDARKLIEREMERFK 92 (885)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s-~dIKDK~-~L~e~RK~IE~~MErFK 92 (885)
|.++.+||+.=|+|+-+|++|..|-.- .+++.|+ .|...-..|..++++|+
T Consensus 210 e~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 210 EELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445668899999999999999755443 3444443 44444555566666664
No 313
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=38.58 E-value=59 Score=36.58 Aligned_cols=51 Identities=24% Similarity=0.161 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002752 129 NNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 183 (885)
Q Consensus 129 ~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLR 183 (885)
+-.|++|++-|-+...|+|.....+.|++ +.++.++.|.+-|.+|=|.|-|
T Consensus 4 k~~~~~~~~~i~k~nee~~~~~~~~~k~~----e~~qkl~sr~~~~~ekke~i~r 54 (359)
T KOG4398|consen 4 KMRIEQLKQTICKGNEEMEKNSEGLLKTK----EKNQKLYSRAQRHQEKKEKIQR 54 (359)
T ss_pred hHHHHHHHHHHhcCcHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777666666666554444432 4555566666666666666665
No 314
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=38.50 E-value=5.9e+02 Score=32.62 Aligned_cols=60 Identities=23% Similarity=0.313 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcC---CChhhHHHHH-HHHHHHHHHH-HHHHHHHHhhhcc
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDT---DNANQKEKFE-ADLKKEIKKL-QRYRDQIKTWIQS 68 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a---~n~nQKEKlE-~DLKKEIKKL-QR~RDQIKtW~~s 68 (885)
.||.|++..|.++|...=.+.---.-- .-+=|==+-| +.|+|.++=| |+||||=|+=-.+
T Consensus 356 sE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe~~~k~~ 420 (861)
T PF15254_consen 356 SEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQEKAEKTS 420 (861)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 488999999999988776653211000 0011111112 4678888877 8899998876444
No 315
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=38.43 E-value=2.7e+02 Score=29.07 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhHHHHhhhhcc
Q 002752 129 NNLVSELESQIDSFEAELEGLTV 151 (885)
Q Consensus 129 ~~~IdeL~~QiE~~EaEiE~L~~ 151 (885)
.+-|+.|...|+.++..+|-++.
T Consensus 78 ~eelerLe~~iKdl~~lye~Vs~ 100 (157)
T COG3352 78 KEELERLEENIKDLVSLYELVSR 100 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777776653
No 316
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=38.40 E-value=3.4e+02 Score=25.50 Aligned_cols=87 Identities=26% Similarity=0.344 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHH
Q 002752 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAK 121 (885)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK 121 (885)
+.|+.-.++|+..+-+=|+-. .+|.+.=++|+.+.+|-..-+.+ .-.....++|.+--+
T Consensus 13 ~~l~~~~~~Ef~~I~~Er~v~------------~kLneLd~Li~eA~~r~~~~~~~---------~~~~~~~l~P~~~i~ 71 (109)
T PF03980_consen 13 EFLEENCKKEFEEILEERDVV------------EKLNELDKLIEEAKERKNSGERE---------KPVWRHSLTPEEDIR 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHhHhccccC---------CCCCCCCCChHHHHH
Confidence 455666666666665555432 26777888888888873322222 112234578888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 122 SETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 122 ~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
......+...++.|+..++.++.+-+.|
T Consensus 72 a~l~~~~~~~~~~L~~~l~~l~~eN~~L 99 (109)
T PF03980_consen 72 AHLAPYKKKEREQLNARLQELEEENEAL 99 (109)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777776555
No 317
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.29 E-value=7e+02 Score=29.04 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 002752 40 QKEKFEADLKKEIKKLQRYRDQI 62 (885)
Q Consensus 40 QKEKlE~DLKKEIKKLQR~RDQI 62 (885)
|-++++.+|.+-=++|+.||.+-
T Consensus 169 ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 169 QIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 45666666666666666666543
No 318
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=38.19 E-value=1.8e+02 Score=28.15 Aligned_cols=57 Identities=11% Similarity=0.204 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhh-------cCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVY-------DTDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~-------~a~n~nQKEKlE~DLKKEIKKLQR~RDQIK 63 (885)
|..+|-+..+.|...|..-+.--.+.. .....+|.++|-.+++.-|..-|+....+|
T Consensus 49 ~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 112 (151)
T cd00179 49 LVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYR 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555443222211 112357888999999999998888777665
No 319
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=38.13 E-value=3.3e+02 Score=29.72 Aligned_cols=71 Identities=24% Similarity=0.387 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 002752 54 KLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVS 133 (885)
Q Consensus 54 KLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~Id 133 (885)
|++.....|..|-.--+-- +....+..++|..+|+||.. || -+.=|.-...||..+|+
T Consensus 160 K~~~a~~Ev~e~e~k~~~a-~~~fe~is~~ik~El~rFe~-er--------------------~~Dfk~~v~~fles~ie 217 (234)
T cd07665 160 KLQQAKDEIAEWESRVTQY-ERDFERISATVRKEVIRFEK-EK--------------------SKDFKNHIIKYLETLLH 217 (234)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HH--------------------HHHHHHHHHHHHHHHHH
Confidence 5555555555444332211 22456666777788888721 00 01122336778888888
Q ss_pred HHHHHHHhHHHHh
Q 002752 134 ELESQIDSFEAEL 146 (885)
Q Consensus 134 eL~~QiE~~EaEi 146 (885)
.=++-||.+|.=+
T Consensus 218 ~qke~ie~We~fl 230 (234)
T cd07665 218 SQQQLVKYWEAFL 230 (234)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777543
No 320
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=37.92 E-value=2.3e+02 Score=24.29 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHH
Q 002752 161 LTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLED 204 (885)
Q Consensus 161 ~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIey 204 (885)
...++.-|..|+-++..|...-..|.+.. +.....|++.++.
T Consensus 43 ~~~~~~ei~~~~~~l~~l~~~~~~L~~~~--~~~~~~i~~~~~~ 84 (105)
T PF00435_consen 43 HKELQEEIESRQERLESLNEQAQQLIDSG--PEDSDEIQEKLEE 84 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HTTHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 34566666677777777766666663333 4444555554443
No 321
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.81 E-value=5.4e+02 Score=27.55 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=32.7
Q ss_pred chhhHHHHHHHHHHHHHHH--------HHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002752 158 PPRLTHLETSITRHKAHIM--------KLELILRLLDNDELSPEQVNDVKDLLEDYVERNQ 210 (885)
Q Consensus 158 ~~r~~~le~~ieRhk~Hi~--------kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~nq 210 (885)
.+||..|+..+-.|..|+. .-|.++..|.|=+ +.+||+.|++...
T Consensus 171 eeRl~~lk~~l~~y~~~~sd~~~~~~~~~E~~~~~l~~~~--------~e~dI~~F~~~~~ 223 (228)
T cd07650 171 EERLNHLKDVLLQFQTHESDYALRTTESAEECMNQLLEFD--------TEDEIQRFARKAS 223 (228)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHhhHHHHHHHHHHhCCC--------hHHHHHHHHHHcc
Confidence 3589999999988888875 5677777666532 4567888887654
No 322
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=37.68 E-value=78 Score=32.99 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhccccch-hhH---HHHHHHHHHHHHHHHHHHHHhhhcc
Q 002752 56 QRYRDQIKTWIQSSEIK-DKK---ALVDARKLIEREMERFKICEKETKT 100 (885)
Q Consensus 56 QR~RDQIKtW~~s~dIK-DK~---~L~e~RK~IE~~MErFK~vEKe~Kt 100 (885)
+++.++|+.+...-+.| |+- .|+-+|+-||+-|.+-..+|--.+-
T Consensus 95 ~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 95 NTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444 332 8999999999999998888866543
No 323
>KOG2117 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.62 E-value=97 Score=35.95 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=24.8
Q ss_pred CCcccchhhhHHHHHHHHHH---HHHHHHHHHHHhhcCC
Q 002752 1 MGASRKLQGEIDRVLKKVQE---GVDVFDSIWNKVYDTD 36 (885)
Q Consensus 1 Maa~RKLQ~EIDr~lKKV~E---Gve~Fd~iyeK~~~a~ 36 (885)
||+.-+.|..+++--+|--+ .|=.||++|+-|++..
T Consensus 44 ~ask~~~~k~ae~qhqKAlaEDptif~YDe~YDdmq~kk 82 (379)
T KOG2117|consen 44 QASKTKSQKTAERQHQKALAEDPTIFGYDEVYDDMQSKK 82 (379)
T ss_pred cchHHHHHHHHHHHHHHhhhcCCchhccchhhHHHHHHH
Confidence 45556667777776666543 5778999999997443
No 324
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=37.37 E-value=1.4e+02 Score=29.24 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=0.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002752 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT 35 (885)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a 35 (885)
.+|+-|.||-.+.-.|.+++..|+.-|..|+.-
T Consensus 18 ~~r~~qEEvASLq~i~k~tv~~ye~~~~~LeqE 50 (106)
T PF03528_consen 18 VQRQWQEEVASLQAILKETVSEYETQWSLLEQE 50 (106)
T ss_dssp ---------------------------------
T ss_pred HHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 468889999999999999999998888876544
No 325
>PRK09793 methyl-accepting protein IV; Provisional
Probab=37.21 E-value=2.3e+02 Score=33.44 Aligned_cols=65 Identities=9% Similarity=0.326 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTD-NANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD 73 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~-n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKD 73 (885)
.++++.+.++.+.++.++..|+++.... .......+-.+|++..+.+.+..+++..|+..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 146 (533)
T PRK09793 81 DDIKTLMTTARASLTQSTTLFKSFMAMTAGNEHVRALQKETEKSFARWHNDLEHQATWLESNQLSD 146 (533)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 4567888888888888899899887653 2344445667888888888888888899987777653
No 326
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=37.11 E-value=2.3e+02 Score=28.88 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhhccccchhh--HHHHHHHHHHHHHHHHHHH
Q 002752 54 KLQRYRDQIKTWIQSSEIKDK--KALVDARKLIEREMERFKI 93 (885)
Q Consensus 54 KLQR~RDQIKtW~~s~dIKDK--~~L~e~RK~IE~~MErFK~ 93 (885)
|+..+--.||..-+.-+.-+. +.|.+.+|.+|.+.+++|.
T Consensus 41 K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~ 82 (162)
T PF05565_consen 41 KADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKE 82 (162)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444333222 2555556666666555543
No 327
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.10 E-value=4.6e+02 Score=28.91 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHh
Q 002752 125 RDWLNNLVSELESQIDSFEAEL 146 (885)
Q Consensus 125 ~~wL~~~IdeL~~QiE~~EaEi 146 (885)
++=|..-|++|+..+|.|+.++
T Consensus 176 ~~kLe~~ie~~~~~ve~f~~~~ 197 (240)
T cd07667 176 RPKVPTDVEKCQDRVECFNADL 197 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445777777777777765
No 328
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=36.87 E-value=2.1e+02 Score=29.11 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=48.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhh--HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKL 83 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQ--KEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~ 83 (885)
.+..++|.++..+++.++.++++-+++..-..... .+.=|.= ++++..|.+--..
T Consensus 11 ~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~L-----------------------l~eq~~L~~~ae~ 67 (157)
T PF04136_consen 11 QYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQL-----------------------LEEQTRLEELAEE 67 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 34568888888888888888887777654433221 2222221 2344567777788
Q ss_pred HHHHHHHHHHHHhhhcc
Q 002752 84 IEREMERFKICEKETKT 100 (885)
Q Consensus 84 IE~~MErFK~vEKe~Kt 100 (885)
|+..+.-|..+|..++.
T Consensus 68 I~~~L~yF~~Ld~itr~ 84 (157)
T PF04136_consen 68 ISEKLQYFEELDPITRR 84 (157)
T ss_pred HHHHhHHHhhHHHHHHH
Confidence 88999999999998764
No 329
>PF08376 NIT: Nitrate and nitrite sensing; InterPro: IPR013587 The nitrate and nitrite-sensing (NIT) domain is a (~250 aa) sensor domain found in various receptor components of signal transduction pathways from different bacterial lineages []. The NIT domain is predicted to be all alpha-helical in structure []. Proteins containing a NIT domain belong to one of four known classes of prokaryotic signal transduction proteins: intracellular transcription anti-termination regulators, sensor histidine kinases, methyl-accepting chemotaxis proteins, diguanylate cyclases/phosphodiesterases. NIT-containing receptors regulate cellular functions such as gene expression (transcription anti-terminators and histidine kinases), cell motility (chemotaxis receptors), and enzyme activity (diguanylate cyclases/phosphodiesterases), in response to changes in nitrate and/or nitrite concentrations. The NIT domain is found as both an extracellular and an intracellular sensor. The NIT domain can be found in combination with other signalling domains, such as ANTAR, HAMP (IPR003660 from INTERPRO), MCP, Hemerythrins (IPR002063 from INTERPRO), CHASE (IPR006189 from INTERPRO), GGDEF (IPR000160 from INTERPRO), PAS (IPR000014 from INTERPRO), EAL (IPR001633 from INTERPRO), HK (IPR005467 from INTERPRO), GAF, REC and Hpt (IPR008207 from INTERPRO).; PDB: 4AKK_A.
Probab=36.57 E-value=4.8e+02 Score=26.61 Aligned_cols=141 Identities=18% Similarity=0.265 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHH
Q 002752 52 IKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNL 131 (885)
Q Consensus 52 IKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~ 131 (885)
|.-||+-|..=-.|++++....+..|...|+...+.+.+|...=..+.... +.++ ....-.++...|..
T Consensus 5 v~~LQ~ERg~s~~~l~s~~~~~~~~l~~qr~~tD~a~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~l~~- 73 (247)
T PF08376_consen 5 VHALQQERGLSAAYLASPGKQFRAELKAQRAATDRAIAELRRALADIDDSD-SDEE---------LRDRLQEILNALDQ- 73 (247)
T ss_dssp HHHHHHHHHHHHHHHHTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHCTT---HH----------HHHHHHHHHHHGGG-
T ss_pred HHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchh---------HHHHHHHHHHHHHh-
Confidence 677999999999999999866688999999999999999976655321111 0000 11222233333333
Q ss_pred HHHHHHHHHhHHHHhhhhc----------------cccCCCCch---hhHHHHHHHHHHHHHHHHHH-HHHHhhhCCCCC
Q 002752 132 VSELESQIDSFEAELEGLT----------------VKKGKTRPP---RLTHLETSITRHKAHIMKLE-LILRLLDNDELS 191 (885)
Q Consensus 132 IdeL~~QiE~~EaEiE~L~----------------~KK~K~~~~---r~~~le~~ieRhk~Hi~kLE-~lLRlL~N~~ld 191 (885)
|.+++.+|+.........- ........+ .+..+. .+-+-+..+..-- .+...|.+|.++
T Consensus 74 L~~~R~~vd~~~~~~~~~~~~Y~~~i~~ll~~~~~l~~~~~d~~l~~~~~a~~-~l~~a~E~~~~era~~~~~l~~~~~~ 152 (247)
T PF08376_consen 74 LPQLRQQVDNRSIDPDEAFDAYTELIDSLLDLIDALAQQSDDPELARQLRALT-ALLRAKEYAGQERALLAGALAAGRLS 152 (247)
T ss_dssp HHHHHHHHHHT-S-HHHHHHHHHHHHHHHHTHHHHHHCC---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 6666777766543332210 011111111 111111 2233333333322 345677888899
Q ss_pred hhhhhhhhhHHHH
Q 002752 192 PEQVNDVKDLLED 204 (885)
Q Consensus 192 pe~V~~IKddIey 204 (885)
+++...+..-+..
T Consensus 153 ~~~~~~~~~~~~~ 165 (247)
T PF08376_consen 153 PEELRQFASLIAR 165 (247)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887766554
No 330
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.45 E-value=9.8e+02 Score=30.18 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002752 76 ALVDARKLIEREMERFKIC 94 (885)
Q Consensus 76 ~L~e~RK~IE~~MErFK~v 94 (885)
.|.+.|+.-+++|-.||+|
T Consensus 111 ~le~lr~qk~eR~~ef~el 129 (660)
T KOG4302|consen 111 YLEGLRKQKDERRAEFKEL 129 (660)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999875
No 331
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.06 E-value=4.4e+02 Score=28.65 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 002752 76 ALVDARKLIEREMERFKICEKET 98 (885)
Q Consensus 76 ~L~e~RK~IE~~MErFK~vEKe~ 98 (885)
.|.+.|+-|...|.++|.+||+-
T Consensus 39 ~l~~ar~~~A~~~a~~k~~e~~~ 61 (225)
T COG1842 39 ELAKARQALAQAIARQKQLERKL 61 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666543
No 332
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=36.02 E-value=5e+02 Score=31.47 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 002752 118 EKAKSETRDWLNNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 118 ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
...|-|+..-...++|-|.+.-|.-|.|.=+|+
T Consensus 466 Q~lkgelEkat~SALdlLkrEKe~~EqefLslq 498 (527)
T PF15066_consen 466 QQLKGELEKATTSALDLLKREKETREQEFLSLQ 498 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667788888888888888877775
No 333
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.77 E-value=6.2e+02 Score=27.70 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHH
Q 002752 23 DVFDSIWNKVYDTDNANQKEKFEADLKKEIKK-LQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMER 90 (885)
Q Consensus 23 e~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKK-LQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MEr 90 (885)
..|-.+|.-+. .-+.+++.+-.+|-.+|-. |.++-.++|.|.-....+- ..|+..+.....+||+
T Consensus 67 ~aw~~~l~e~~--~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~-~k~qk~~~~~~~~lek 132 (253)
T cd07676 67 RAFLMTLNEMN--DYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDG-RKAQQHIETCWKQLES 132 (253)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45566665555 3467899999998776654 8888899999987766554 3345555555555544
No 334
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=35.63 E-value=6.9e+02 Score=28.21 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002752 163 HLETSITRHKAHIMKLELILRLLDND 188 (885)
Q Consensus 163 ~le~~ieRhk~Hi~kLE~lLRlL~N~ 188 (885)
.+...+++.+--+.+||.|.|.|...
T Consensus 283 ~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34556677888899999999999764
No 335
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=35.58 E-value=2.3e+02 Score=24.89 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002752 119 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 183 (885)
Q Consensus 119 keK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLR 183 (885)
.+|..+..=+...|++++.-|+.+|.|+-.+.. .....+...+..|+-.+.+|+.-|+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~-------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPP-------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366777788889999999999999999876621 2334667777778877777776554
No 336
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=35.52 E-value=5.6e+02 Score=27.13 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=22.5
Q ss_pred hhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002752 184 LLDNDELSPEQVNDVKDLLEDYVERNQ 210 (885)
Q Consensus 184 lL~N~~ldpe~V~~IKddIeyYVE~nq 210 (885)
.|....|||..+..|...|+..+++-.
T Consensus 169 vl~~~nldp~~~~~v~~~l~~~l~~KN 195 (201)
T PF13851_consen 169 VLAAANLDPAALSQVSKKLEDVLDSKN 195 (201)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999998654
No 337
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=35.45 E-value=4.7e+02 Score=26.21 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002752 41 KEKFEADLKKEIKKLQRYRDQIKTWI 66 (885)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~ 66 (885)
.+|.|..|.++.+.|+.|.+.|+.|.
T Consensus 50 ~~~~e~~le~d~~~L~~Le~~~~~~~ 75 (160)
T PF13094_consen 50 IEKEEAALERDYEYLQELEKNAKALE 75 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777766654
No 338
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=35.17 E-value=91 Score=29.61 Aligned_cols=29 Identities=7% Similarity=0.071 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002752 38 ANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (885)
Q Consensus 38 ~nQKEKlE~DLKKEIKKLQR~RDQIKtW~ 66 (885)
..+.+.++.+|...++.|.+++.+++.|.
T Consensus 79 ~~~~~~~~~~l~~~~~~L~~l~~~L~~~~ 107 (107)
T cd01111 79 EACLAQLRQKIEVRRAALNALTTQLAEMA 107 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999884
No 339
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=35.13 E-value=56 Score=28.59 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=18.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHH
Q 002752 68 SSEIKDKKALVDARKLIEREMERFK 92 (885)
Q Consensus 68 s~dIKDK~~L~e~RK~IE~~MErFK 92 (885)
+.+.|++..=...||.|=..||+|+
T Consensus 31 s~~LK~~GIp~r~RryiL~~~ek~r 55 (57)
T PF09597_consen 31 SKQLKELGIPVRQRRYILRWREKYR 55 (57)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 3445565556678999999999996
No 340
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=35.05 E-value=1.6e+02 Score=27.51 Aligned_cols=47 Identities=21% Similarity=0.410 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHH----HHHHHHhhhccccc
Q 002752 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR----YRDQIKTWIQSSEI 71 (885)
Q Consensus 12 Dr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR----~RDQIKtW~~s~dI 71 (885)
+++.+.|.+.-+.++.+|+++.. .|.|.+||.. |.+.|.+.++++.|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~-------------Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v 69 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEE-------------VKEENEKLESENEYLQQYIGNLMSSSSV 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 48889999999999999999954 4555566643 44555555555443
No 341
>PF06729 CENP-R: Kinetochore component, CENP-R; InterPro: IPR009601 This family consists of mammalian nuclear receptor co-activator NRIF3 proteins. NRIF3 exhibits a distinct receptor specificity in interacting with and potentiating the activity of only TRs and RXRs but not other examined nuclear receptors. NRIF3 as a coregulator that possesses both transactivation and transrepression domains and/or functions. Collectively, the NRIF3 family of coregulators may play dual roles in mediating both positive and negative regulatory effects on gene expression [].
Probab=34.60 E-value=95 Score=31.56 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHH---------HHHHHHHHHHHHHHHHHhh
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEA---------DLKKEIKKLQRYRDQIKTW 65 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~---------DLKKEIKKLQR~RDQIKtW 65 (885)
-|++-++-||.--++.|=+||+.+.+...-.---+||+ +||.|++|-|.|=-++..|
T Consensus 59 D~fm~L~SkvekS~eeime~~qnL~slQALeGsreLEnLiGvs~sSc~Lk~ElqKTkeLmtkv~k~ 124 (139)
T PF06729_consen 59 DEFMVLLSKVEKSLEEIMEIRQNLSSLQALEGSRELENLIGVSCSSCDLKRELQKTKELMTKVEKQ 124 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999876654443334665 8999999988665555443
No 342
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=34.49 E-value=3.1e+02 Score=28.94 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 002752 76 ALVDARKLIEREMERFKICEKETKTKAFSKEGL 108 (885)
Q Consensus 76 ~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL 108 (885)
.+.+.-|.||.+|+.| .++|.++=+
T Consensus 62 ~~s~~~r~i~~~~~~~--------~~~~~~~li 86 (219)
T PF08397_consen 62 QISEVHRRIENELEEV--------FKAFHSELI 86 (219)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 5566777788887776 566665544
No 343
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=34.34 E-value=1.7e+02 Score=27.81 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002752 76 ALVDARKLIEREMERFKICEK 96 (885)
Q Consensus 76 ~L~e~RK~IE~~MErFK~vEK 96 (885)
.|...+..|+..+.+|...=+
T Consensus 36 ~L~~~e~~l~~~~~~f~~flk 56 (126)
T PF13863_consen 36 ELEKKEQELEEDVIKFDKFLK 56 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666777777777644433
No 344
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=34.33 E-value=4.4e+02 Score=31.23 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhC
Q 002752 164 LETSITRHKAHIMKLELILRLLDN 187 (885)
Q Consensus 164 le~~ieRhk~Hi~kLE~lLRlL~N 187 (885)
++..++.++..|.+|+.-|+.|..
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444455555555555555543
No 345
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=34.27 E-value=8.6e+02 Score=28.90 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 002752 12 DRVLKKVQEGVDVFDSIWNKVY 33 (885)
Q Consensus 12 Dr~lKKV~EGve~Fd~iyeK~~ 33 (885)
.|+.|+|..|..+-+++..-++
T Consensus 17 KrtvKRi~DG~rlc~Dl~~~~q 38 (472)
T KOG2856|consen 17 KRTVKRIEDGHRLCNDLMNCSQ 38 (472)
T ss_pred hhhhhhhhhHHHHHHHHHHHHH
Confidence 4788999999988888765553
No 346
>PLN03237 DNA topoisomerase 2; Provisional
Probab=34.08 E-value=1.4e+03 Score=31.42 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhHHHHhhhh
Q 002752 129 NNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 129 ~~~IdeL~~QiE~~EaEiE~L 149 (885)
.+-+++|.+|++..+.|++.|
T Consensus 1125 ~E~~~kL~~~~~~k~~el~~l 1145 (1465)
T PLN03237 1125 LEKVQELCADRDKLNIEVEDL 1145 (1465)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999998
No 347
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=33.99 E-value=14 Score=43.99 Aligned_cols=63 Identities=19% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHHH-HHHHHHHHHhhhccccchhhH-HHHH-HHHHHHHHHHHHHHHHhhhcccccc----ccccCCCC
Q 002752 47 DLKKEIKK-LQRYRDQIKTWIQSSEIKDKK-ALVD-ARKLIEREMERFKICEKETKTKAFS----KEGLGQQP 112 (885)
Q Consensus 47 DLKKEIKK-LQR~RDQIKtW~~s~dIKDK~-~L~e-~RK~IE~~MErFK~vEKe~KtKafS----kEGL~~~~ 112 (885)
.||++|++ +..+++.|-.+.-+.+...++ .|.+ ..+ .+=+-|+.++++.+-+.|. ..|+.-.+
T Consensus 88 ~f~~~m~~lie~l~~~ip~~Fese~y~~~~~~i~~~~~~---~~~~~~~~l~~~A~~~gf~l~~t~~G~~~~P 157 (509)
T PF13654_consen 88 KFKKDMEELIEELKEEIPAAFESEEYQERKEEIEEEFQE---KREKLLEELEEEAEEKGFALKRTPSGFVFIP 157 (509)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccc
Confidence 57788888 567889999999999988765 2222 111 1223466788888888774 56665444
No 348
>PRK09546 zntB zinc transporter; Reviewed
Probab=33.97 E-value=3.3e+02 Score=30.11 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002752 127 WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 188 (885)
Q Consensus 127 wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~ 188 (885)
-....+++|+.++|.+|.++-. .......++-.|+..+-+.+-++.-+..++..|.+.
T Consensus 154 ~~~~~l~~i~~~ld~lE~~l~~----~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~ 211 (324)
T PRK09546 154 HASEFIEELHDKIIDLEDNLLD----QQIPPRGELALLRKQLIVMRRYMAPQRDVFARLASE 211 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555555555554421 111122478889999988888888888888766543
No 349
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=33.95 E-value=65 Score=27.04 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhCCCCChhhhh-hhhhHHHHHHHh
Q 002752 173 AHIMKLELILRLLDNDELSPEQVN-DVKDLLEDYVER 208 (885)
Q Consensus 173 ~Hi~kLE~lLRlL~N~~ldpe~V~-~IKddIeyYVE~ 208 (885)
-.+.+||.|++.|+||+++-|+.- ..++-++.+-.+
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c 39 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKC 39 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999966544 466666555443
No 350
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=33.80 E-value=86 Score=34.03 Aligned_cols=52 Identities=27% Similarity=0.445 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH----HHhh----c---CCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 002752 9 GEIDRVLKKVQEGVDVFDSIW----NKVY----D---TDNANQKEKFEADLKKEIKKLQRYRDQI 62 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iy----eK~~----~---a~n~nQKEKlE~DLKKEIKKLQR~RDQI 62 (885)
+||+.+|.+=+|..+...+ | .|+. . ..+.+ -+-|..-||+||+.|.+-|+.+
T Consensus 144 ~eve~il~~~e~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~-~~sF~~~l~~ql~~l~~~r~e~ 206 (219)
T PRK13415 144 KEIEEILAQHEERLESKAE-WSRWGQKLRDQWKGKSKQKQTT-LPSFSALLKEELKELKEKRSEG 206 (219)
T ss_pred HHHHHHHHHHHHhhhhhhc-hHHHHHHHHHhhhccccCCCCC-CccHHHHHHHHHHHHHHHHHHH
Confidence 6899999988887655444 4 2221 1 12222 3679999999999998888766
No 351
>PRK13411 molecular chaperone DnaK; Provisional
Probab=33.79 E-value=2.3e+02 Score=34.81 Aligned_cols=36 Identities=8% Similarity=0.195 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Q 002752 52 IKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREM 88 (885)
Q Consensus 52 IKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~M 88 (885)
-++++..-++++.|+..+++ |+..+.+.++.++..+
T Consensus 557 r~~i~~~l~~~~~wL~~~~~-~~~~~~~~~~el~~~~ 592 (653)
T PRK13411 557 KQRAEQKVEQLEAALTDPNI-SLEELKQQLEEFQQAL 592 (653)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHH
Confidence 34555555666667766442 4444444434333333
No 352
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=33.70 E-value=65 Score=38.43 Aligned_cols=78 Identities=17% Similarity=0.297 Sum_probs=52.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--c----cchhhHHHHH--
Q 002752 8 QGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS--S----EIKDKKALVD-- 79 (885)
Q Consensus 8 Q~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s--~----dIKDK~~L~e-- 79 (885)
|..|+.+|+=+.|-|+.|+.--+.++ ....|+ -+.|+.|||.|+.+-.+|..=..+ + +.|..-..-|
T Consensus 135 ~~~l~~ll~Pl~e~l~~f~~~v~~~~---~~~~~~--~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~q 209 (475)
T PRK10361 135 RQSLNSLLSPLREQLDGFRRQVQDSF---GKEAQE--RHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVV 209 (475)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHH
Confidence 45789999999999999997555444 333333 489999999999998888764433 2 3333334444
Q ss_pred HHHHHHHH-HHH
Q 002752 80 ARKLIERE-MER 90 (885)
Q Consensus 80 ~RK~IE~~-MEr 90 (885)
.++.+|.. |..
T Consensus 210 LerILE~sGL~~ 221 (475)
T PRK10361 210 LTRVLEASGLRE 221 (475)
T ss_pred HHHHHHHhCCCc
Confidence 56666665 443
No 353
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=33.69 E-value=1.7e+02 Score=25.68 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=36.3
Q ss_pred cchhhhHHHHHHH------HHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002752 5 RKLQGEIDRVLKK------VQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWI 66 (885)
Q Consensus 5 RKLQ~EIDr~lKK------V~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~ 66 (885)
+|++.-|+.+-++ |.||.+..-.+|.+= ...-..+..+..|.---.||+.+|.+|+...
T Consensus 5 ~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~---~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 5 SKLQSRLERLEKELSIELKVKEGAENLLRLYSDE---KKKKLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666554 456666555555421 1113466777777777788888888886543
No 354
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=33.62 E-value=6.2e+02 Score=27.07 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=13.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHH
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSI 28 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~i 28 (885)
.|+.|||..-.++.+.-...+..
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~ 27 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEA 27 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567776666666555555543
No 355
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.38 E-value=5.5e+02 Score=33.77 Aligned_cols=148 Identities=24% Similarity=0.302 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh-HHHHHHHHHHHHHHHHHHHHH----hhhccccccccccCCCCCCC
Q 002752 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK-KALVDARKLIEREMERFKICE----KETKTKAFSKEGLGQQPKTD 115 (885)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK-~~L~e~RK~IE~~MErFK~vE----Ke~KtKafSkEGL~~~~k~D 115 (885)
..+++..|++=-++|-.+|--|. ||-.| .+|+..-+.+|.+...|+.== +|++|+ .+|=...+..+.
T Consensus 673 ~~~~~~~~~~l~~~L~~~r~~i~------~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~--k~e~~~v~~s~~ 744 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDEVRNEIE------DIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTI--KGEKSRVQESLE 744 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHhh
Confidence 44555555555555555554442 23323 377888888888888776422 222221 111111111122
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhh
Q 002752 116 PKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQV 195 (885)
Q Consensus 116 P~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V 195 (885)
|+.+ ...=|+..+..+..|.+.||+|+-.--. .+-..+ ....+...+-.|.+|-.=||.|-++.++ |
T Consensus 745 ~k~~----~Le~i~~~l~~~~~~~~~~e~el~sel~-----sqLt~e-e~e~l~kLn~eI~~l~~kl~~~~~er~~---~ 811 (1200)
T KOG0964|consen 745 PKGK----ELEEIKTSLHKLESQSNYFESELGSELF-----SQLTPE-ELERLSKLNKEINKLSVKLRALREERID---I 811 (1200)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHhHHHHHhHHHH-----hhcCHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHH---H
Confidence 2222 2233455666777777777777532100 001111 2235566677778888888888888776 7
Q ss_pred hhhhhHHHHHHHhC
Q 002752 196 NDVKDLLEDYVERN 209 (885)
Q Consensus 196 ~~IKddIeyYVE~n 209 (885)
.-+|..|++++..|
T Consensus 812 ~~rk~~le~~l~~k 825 (1200)
T KOG0964|consen 812 ETRKTALEANLNTK 825 (1200)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888899988765
No 356
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=33.15 E-value=1.5e+02 Score=36.11 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHH
Q 002752 51 EIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERF 91 (885)
Q Consensus 51 EIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErF 91 (885)
+-++++..=++.+.|+..+ |+..+.+.++.++..|..|
T Consensus 558 ~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~ 595 (616)
T PRK05183 558 ERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEF 595 (616)
T ss_pred HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHH
Confidence 3456666667788899876 5555555556665555443
No 357
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=33.08 E-value=2.8e+02 Score=35.18 Aligned_cols=142 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccchhh-HHHHHHHHHHHHHHHHHHHHHhhhccc----------ccccc
Q 002752 39 NQKEKFEADLKKEIKKLQRYRDQIKTWIQS-SEIKDK-KALVDARKLIEREMERFKICEKETKTK----------AFSKE 106 (885)
Q Consensus 39 nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s-~dIKDK-~~L~e~RK~IE~~MErFK~vEKe~KtK----------afSkE 106 (885)
+.|+++|.+|-+.-.+|+.+|-||+---.. .+++.+ ..+.+...++|.+++..+..-+...++ ..+|.
T Consensus 603 ~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki 682 (769)
T PF05911_consen 603 SEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKI 682 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh---ccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002752 107 GLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL---TVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 183 (885)
Q Consensus 107 GL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L---~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLR 183 (885)
.... .-.+++|....+.+..|. +|+.|++....+.... ...++-+....|......+.-.+--|..|-.=|+
T Consensus 683 ~~Le----~Ele~er~~~~e~~~kc~-~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLk 757 (769)
T PF05911_consen 683 SSLE----EELEKERALSEELEAKCR-ELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLK 757 (769)
T ss_pred HHHH----HHHHHHHhcchhhhhHHH-HHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh
Q 002752 184 LL 185 (885)
Q Consensus 184 lL 185 (885)
.|
T Consensus 758 sL 759 (769)
T PF05911_consen 758 SL 759 (769)
T ss_pred hc
No 358
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.92 E-value=3.4e+02 Score=31.91 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhCCCCChhhhh-hhhhHHHHHHHhCCCCc
Q 002752 176 MKLELILRLLDNDELSPEQVN-DVKDLLEDYVERNQDDF 213 (885)
Q Consensus 176 ~kLE~lLRlL~N~~ldpe~V~-~IKddIeyYVE~nqdDf 213 (885)
.+++.+-++|..-+++.+.|. .|+++++.|-++-..||
T Consensus 431 ~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~~~~d~ 469 (503)
T KOG2273|consen 431 EKVNELEELLALKELELDEISERIRAELERFEESRRQDF 469 (503)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555556555555 58888888877554454
No 359
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.86 E-value=7.9e+02 Score=29.63 Aligned_cols=49 Identities=29% Similarity=0.266 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 002752 83 LIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 146 (885)
Q Consensus 83 ~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEi 146 (885)
-|+-+|||=|.+|+| -|.. +.+.-.+-..=|..+|--|..++|.++.|.
T Consensus 286 Eil~k~eReasle~E---------nlqm------r~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 286 EILIKKEREASLEKE---------NLQM------RDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHH---------HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 355566666666654 2211 222333333445556666666666655554
No 360
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=32.84 E-value=1.5e+02 Score=27.26 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=35.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhc------CCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYD------TDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~------a~n~nQKEKlE~DLKKEIKKLQR~RDQIK 63 (885)
+..+|.+..+.|.+-|..-+..-.+... ..-.+|.++|-.+|+..|...|+.+..++
T Consensus 51 ~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 113 (117)
T smart00503 51 LIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYR 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444333211 12256889999999999999988877665
No 361
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=32.60 E-value=6.7e+02 Score=32.81 Aligned_cols=68 Identities=29% Similarity=0.343 Sum_probs=39.7
Q ss_pred HHhhcCCChhh----HHHHHHHHHHHHHHHHHH-HHHHHhhhccccchhhHHHHH-HHHHHHHHHHHHHHHHhhhcc
Q 002752 30 NKVYDTDNANQ----KEKFEADLKKEIKKLQRY-RDQIKTWIQSSEIKDKKALVD-ARKLIEREMERFKICEKETKT 100 (885)
Q Consensus 30 eK~~~a~n~nQ----KEKlE~DLKKEIKKLQR~-RDQIKtW~~s~dIKDK~~L~e-~RK~IE~~MErFK~vEKe~Kt 100 (885)
.|+....+.+| ||-+|.+-|.=-|||++- ++-||. ..-||||..+.. .|.+++.-+++|=..=|.++.
T Consensus 1069 ~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~---~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~ 1142 (1189)
T KOG1265|consen 1069 RKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKV---DKVIKDKAERERRKRELNSSNIKEFVEERKRLAE 1142 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 777777755555566655 467887 677889875543 344555555665444444443
No 362
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=32.55 E-value=2e+02 Score=26.71 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhCC----CCChhhhhhhhhHHHHH
Q 002752 160 RLTHLETSITRHKAHIMKLELILRLLDND----ELSPEQVNDVKDLLEDY 205 (885)
Q Consensus 160 r~~~le~~ieRhk~Hi~kLE~lLRlL~N~----~ldpe~V~~IKddIeyY 205 (885)
-..+|+..++-.+|-+.-||..++.++.+ .|++++|..-|.-|...
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~ 89 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAI 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHH
Confidence 34678888999999999999999999998 78888888766655543
No 363
>PF14282 FlxA: FlxA-like protein
Probab=32.52 E-value=1e+02 Score=29.50 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002752 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSE 70 (885)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~d 70 (885)
+..=..|++.|++|| ++|+.|..+.+
T Consensus 18 ~~~I~~L~~Qi~~Lq---~ql~~l~~~~~ 43 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQ---EQLQELSQDSD 43 (106)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHcccC
Confidence 555667888888877 78888888533
No 364
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.48 E-value=1.9e+02 Score=31.07 Aligned_cols=31 Identities=6% Similarity=0.064 Sum_probs=24.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDT 35 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a 35 (885)
+|++.-+-..++.|.-.-+.|+.-+..+..+
T Consensus 112 ~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~ 142 (261)
T cd07648 112 AEAVQAIQTTTAALQKAKEAYHARCLELERL 142 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888777766544
No 365
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=32.37 E-value=4.9e+02 Score=27.88 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=57.7
Q ss_pred HHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 002752 59 RDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQ 138 (885)
Q Consensus 59 RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~Q 138 (885)
++.+-.||.. --...+++-|++-+.||+| =++|..+++.|-..- . ..+-.|+..
T Consensus 34 TEEFSa~IG~----vLd~yL~yQKafnE~MekY-------------Le~lNlPSr~Diarv--A-------~lvinlE~k 87 (189)
T TIGR02132 34 REEFSALMGN----VLDLNLFYQKALNDTTGNY-------------LEQVNVPTKEDIANV--A-------SLVINLEEK 87 (189)
T ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-------------HHhCCCCCHHHHHHH--H-------HHHHHHHHH
Confidence 3445555543 1124567899999999997 235555444332111 1 122233333
Q ss_pred HHhHHHHhhhhccccC------CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002752 139 IDSFEAELEGLTVKKG------KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 207 (885)
Q Consensus 139 iE~~EaEiE~L~~KK~------K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE 207 (885)
||.+|.-++.+-...+ ..-..++..++ +|.+.-=.|+..||++|+-..-+ -+++||-|..-|.
T Consensus 88 vD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~---q~~~~l~~K~D~~L~llE~~~~~---~~~~~~~~~~~~~ 156 (189)
T TIGR02132 88 VDLIEEFFDDKFDELEAQQEQAPALKKDVTKLK---QDIKSLDKKLDKILELLEGQQKT---QDELKETIQKQIK 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHH---HHHHHHHHHHHHHHHHHhcCccc---hhHHHHHHHHHHh
Confidence 3333333333211111 00012333444 34444446777889999876544 3456666666554
No 366
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=32.33 E-value=1.9e+02 Score=29.83 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhh
Q 002752 127 WLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 127 wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
=+...|..|+..|+....|++.|
T Consensus 58 ~~~~~v~~~~~~i~~k~~El~~L 80 (146)
T PF05852_consen 58 EIKNKVSSLETEISEKKKELSHL 80 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888887776
No 367
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=32.30 E-value=89 Score=32.34 Aligned_cols=56 Identities=34% Similarity=0.462 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 78 VDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 78 ~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
++.|..|..+.-| +|-++|-=++=.+.|.. -.||.-++ |+.+++.||....|+..|
T Consensus 48 meVrekVq~~Lgr---veEetkrLa~ireeLE~--l~dP~RkE-----------v~~vRkkID~vNreLkpl 103 (159)
T PF04949_consen 48 MEVREKVQAQLGR---VEEETKRLAEIREELEV--LADPMRKE-----------VEMVRKKIDSVNRELKPL 103 (159)
T ss_pred HHHHHHHHHHHhH---HHHHHHHHHHHHHHHHh--hccchHHH-----------HHHHHHHHHHHHHHhhHH
Confidence 4555556555555 66677777777777643 23674442 334444455555555544
No 368
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=32.21 E-value=2.1e+02 Score=28.88 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCC--ChhhhhhhhhHHHHHHHh
Q 002752 164 LETSITRHKAHIMKLELILRLLDNDEL--SPEQVNDVKDLLEDYVER 208 (885)
Q Consensus 164 le~~ieRhk~Hi~kLE~lLRlL~N~~l--dpe~V~~IKddIeyYVE~ 208 (885)
|+.+++--+-||.+||.|++.|.-.-= ..+-+..|-.+.+..++.
T Consensus 40 l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~~~~~ 86 (159)
T PF05974_consen 40 LEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVAEAQELIEE 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHHHHHHHHhc
Confidence 444444447899999999999964432 124566677777777764
No 369
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=32.20 E-value=7.4e+02 Score=27.48 Aligned_cols=147 Identities=17% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHH--------------HHHHHHhhhccccchhhHHH
Q 002752 12 DRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR--------------YRDQIKTWIQSSEIKDKKAL 77 (885)
Q Consensus 12 Dr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR--------------~RDQIKtW~~s~dIKDK~~L 77 (885)
+++.|+|+.|...-++|-+=+. .|-++|.+--|.+.||-| ++.-...-++.-|-=-+.-.
T Consensus 8 ~~~~kr~~~g~~~~~dl~~f~k------ERA~IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~H~ 81 (258)
T cd07680 8 KRTVKRIDDGHRLCNDLMNCVQ------ERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQ 81 (258)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc----cccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccc
Q 002752 78 VDARKLIEREMERFKICEKETKTK----AFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK 153 (885)
Q Consensus 78 ~e~RK~IE~~MErFK~vEKe~KtK----afSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK 153 (885)
.=.-.++++.+|.||..-|+...| +| |++.++.+=+..+-..+...+..++.
T Consensus 82 ~la~~L~~e~~e~~r~~qk~~~~k~~~~~~---------------ke~K~~e~~~~KaQK~~~k~~k~v~~--------- 137 (258)
T cd07680 82 EVKNNLLNEDLEKVKNWQKDAYHKQIMGGF---------------KETKEAEDGFRKAQKPWAKKMKELEA--------- 137 (258)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhh---------------HHHHHHHHHHHHHHhHHHHHHHHHHH---------
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh------CCCCChhhhhhhhhHHH
Q 002752 154 GKTRPPRLTHLETSITRHKAHIMKLELILRLLD------NDELSPEQVNDVKDLLE 203 (885)
Q Consensus 154 ~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~------N~~ldpe~V~~IKddIe 203 (885)
.|-+||..+.|.=.-+.. .-.+++++|+.+++-++
T Consensus 138 ---------------sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~ 178 (258)
T cd07680 138 ---------------AKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVD 178 (258)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHH
No 370
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=32.18 E-value=3.6e+02 Score=28.53 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
...=|...++.++.+|+.++..++.|
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L 125 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKL 125 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555554
No 371
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.17 E-value=7e+02 Score=27.24 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhHHHHh
Q 002752 131 LVSELESQIDSFEAEL 146 (885)
Q Consensus 131 ~IdeL~~QiE~~EaEi 146 (885)
.+.+++..|..+|+.|
T Consensus 54 eLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 54 ELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555554
No 372
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=32.08 E-value=8.9e+02 Score=29.97 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=24.5
Q ss_pred hHHHHhhhhccccCCCC-chhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 141 SFEAELEGLTVKKGKTR-PPRLTHLETSITRHKAHIMKLELILRLL 185 (885)
Q Consensus 141 ~~EaEiE~L~~KK~K~~-~~r~~~le~~ieRhk~Hi~kLE~lLRlL 185 (885)
.++.|+|++.....+.. ..||-++-.-|.+-+--|.|+-.=.|.|
T Consensus 472 qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~l 517 (594)
T PF05667_consen 472 QLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTREL 517 (594)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45555555532111111 2477777777777777777665544444
No 373
>PF09210 DUF1957: Domain of unknown function (DUF1957); InterPro: IPR015293 This C-terminal domain is found in a set of hypothetical bacterial proteins that have a N-terminal domain related to the glycoside hydrolase family 57 family GH57 from CAZY. The exact function of this domain has not, as yet, been defined. ; PDB: 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=32.08 E-value=66 Score=30.84 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhh
Q 002752 164 LETSITRHKAHIMKLELILRLLDNDELSPEQVNDVK 199 (885)
Q Consensus 164 le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IK 199 (885)
-+...+|-+.|+.+...|..+|..+.|+.+-+.+|.
T Consensus 53 ~~YA~~R~~~Hl~rF~~L~~~l~~~~id~~~L~~~E 88 (102)
T PF09210_consen 53 VEYARERFKEHLNRFWRLYDMLESGRIDEEWLEELE 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 457789999999999999999999999966555544
No 374
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=32.01 E-value=4.7e+02 Score=29.57 Aligned_cols=93 Identities=17% Similarity=0.326 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhH-HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHH
Q 002752 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK-ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120 (885)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~-~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~eke 120 (885)
+||-++|+.-=+||....+-|-.|-=..|-|+-+ .+--+|-++++-=|- .+.-|+--|. -.+-+
T Consensus 180 ~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeEl---------G~q~s~Gria------~Le~e 244 (330)
T KOG2991|consen 180 LRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEEL---------GHQASEGRIA------ELEIE 244 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHH---------HhhhhcccHH------HHHHH
Confidence 5677777777789999999999999999999755 445688888765443 1222221111 01100
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 121 ---KSETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 121 ---K~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
...-.+=|+..-++|..-++.+..++|..
T Consensus 245 LAmQKs~seElkssq~eL~dfm~eLdedVEgm 276 (330)
T KOG2991|consen 245 LAMQKSQSEELKSSQEELYDFMEELDEDVEGM 276 (330)
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcc
Confidence 00112235566677777777777777764
No 375
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=31.82 E-value=4.5e+02 Score=32.23 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ 56 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQ 56 (885)
+||+..|-.+.=|...=-.+.+|=... ...+|+--|..|+|||--.+
T Consensus 191 kEvE~~F~~lsL~f~~D~~TLe~R~~~-~eR~RdlaEeNl~kEi~~~~ 237 (538)
T PF05781_consen 191 KEVEAEFLRLSLGFKCDRFTLEKRLKL-EERSRDLAEENLKKEIENCL 237 (538)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 466666666665544333333222111 12345555555555554333
No 376
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=31.80 E-value=97 Score=35.45 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHh
Q 002752 50 KEIKKLQRYRDQIKT 64 (885)
Q Consensus 50 KEIKKLQR~RDQIKt 64 (885)
++.+-+-|.|..+|.
T Consensus 36 ~C~ssI~~QkkrLk~ 50 (330)
T PF07851_consen 36 KCSSSISHQKKRLKE 50 (330)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 377
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=31.70 E-value=1.9e+02 Score=29.34 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCC--CChhhhhhhhhHHHHHHHhC
Q 002752 162 THLETSITRHKAHIMKLELILRLLDNDE--LSPEQVNDVKDLLEDYVERN 209 (885)
Q Consensus 162 ~~le~~ieRhk~Hi~kLE~lLRlL~N~~--ldpe~V~~IKddIeyYVE~n 209 (885)
+.|+.+++--+.||.+||.|++.|.-.- +..+-+..|-...+.++...
T Consensus 36 ~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~~~~~~~ 85 (147)
T cd07909 36 EAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAEELIEET 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHHHHHhcc
Confidence 3455566666899999999999986653 34566666666666666533
No 378
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=31.49 E-value=3.7e+02 Score=26.27 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh
Q 002752 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDK 74 (885)
Q Consensus 10 EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK 74 (885)
+++++|....++-+.-..+=++.. .-..+-+..+.+|+++.++||+.+. .++..+.+.+
T Consensus 23 d~~~v~~~~~~~k~~~~~l~~~~~--~~~~~l~~~~~el~~~~~~l~~~~~----~ls~~~~~~~ 81 (158)
T PF03938_consen 23 DVDKVFQESPAGKDAQAKLQEKFK--ALQKELQAKQKELQKLQQKLQSQKA----TLSEEERQKR 81 (158)
T ss_dssp -HHHHHHHHHHHHTHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTS--------SSHHHHHH
T ss_pred eHHHHHHhCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhh----ccchhHHHHH
Confidence 466777666665554444333321 0122233444444444444444433 5555555544
No 379
>PF00489 IL6: Interleukin-6/G-CSF/MGF family; InterPro: IPR003573 Interleukin-6 (IL6), also refered to as B-cell stimulatory factor-2 (BSF-2) and interferon beta-2, is a cytokine involved in a wide variety of biological functions []. It plays an essential role in the final differentiation of B-cells into IG-secreting cells, as well as inducing myeloma/plasmacytoma growth, nerve cell differentiation and, in hepatocytes, acute phase reactants [, ]. A number of other cytokines may be grouped with IL6 on the basis of sequence similarity [, , ]: these include granulocyte colony-stimulating factor (GCSF) and myelomonocytic growth factor (MGF). GCSF acts in hematopoiesis by affecting the production, differentiation and function of 2 related white cell groups in the blood []. MGF also acts in hematopoiesis, stimulating proliferation and colony formation of normal and transformed avian cells of the myeloid lineage. Cytokines of the IL6/GCSF/MGF family are glycoproteins of about 170 to 180 amino acid residues that contains four conserved cysteine residues involved in two disulphide bonds []. They have a compact, globular fold (similar to other interleukins), stabilised by the 2 disulphide bonds. One half of the structure is dominated by a 4 alpha-helix bundle with a left-handed twist []: the helices are anti-parallel, with 2 overhand connections, which fall into a 2-stranded anti-parallel beta-sheet. The fourth alpha-helix is important to the biological activity of the molecule []. It has been said [] that this family can be extended by the adjunction of LIF and OSM (see the relevant entry IPR001581 from INTERPRO) which seem to be structurally related.; GO: 0005125 cytokine activity, 0006955 immune response, 0005576 extracellular region; PDB: 1P9M_B 2IL6_A 1IL6_A 1ALU_A 3QWR_B 3DUH_C 3D85_C 3D87_C 1BGC_A 2L3Y_A ....
Probab=31.47 E-value=1.8e+02 Score=29.50 Aligned_cols=52 Identities=17% Similarity=0.370 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHH-HHHHHHHHh
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKT 64 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKt 64 (885)
-|.||.||..|+-.|..+++-++. ....-++.. .+|+.-++-| +-+++++|.
T Consensus 52 ~e~CL~ri~~GL~~yq~lL~~l~~-~~~~~~~~v-~~Lq~~~~~L~~~i~~~~~~ 104 (154)
T PF00489_consen 52 KETCLSRIHSGLQEYQILLKYLQG-EFPGLKENV-ESLQLDTKDLAQTIKQKMKN 104 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-SSTTTHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hCccchhHH-HHHHHHHHHHHHHHHHHhhc
Confidence 378999999999999999986655 333333333 3455555544 344445554
No 380
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=31.44 E-value=7.1e+02 Score=27.06 Aligned_cols=62 Identities=29% Similarity=0.401 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHH----HHHHHHHHHHHHHHHHH---HHHhHHHHhhh
Q 002752 76 ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA----KSETRDWLNNLVSELES---QIDSFEAELEG 148 (885)
Q Consensus 76 ~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~eke----K~E~~~wL~~~IdeL~~---QiE~~EaEiE~ 148 (885)
.+.+.-|.||.+++.| +|+|.++-+. |.++. +..+.+..++.-.+.++ -++..++|+.+
T Consensus 72 ~i~~~~r~ie~~l~~~--------~~~~~~~li~------pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~K 137 (223)
T cd07605 72 QIVDTHKSIEASLEQV--------AKAFHGELIL------PLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKK 137 (223)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777776 7888888773 33332 22233333333334332 35566667777
Q ss_pred hcc
Q 002752 149 LTV 151 (885)
Q Consensus 149 L~~ 151 (885)
++.
T Consensus 138 l~K 140 (223)
T cd07605 138 LQK 140 (223)
T ss_pred HHH
Confidence 753
No 381
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.41 E-value=2.5e+02 Score=30.65 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=29.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 002752 4 SRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN 37 (885)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n 37 (885)
.+|+|+++++.+++|.-.-..|+..+...+.+..
T Consensus 116 ~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~ 149 (253)
T cd07676 116 GRKAQQHIETCWKQLESSKRRFERDCKEADRAQQ 149 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999988888876644
No 382
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.41 E-value=91 Score=29.63 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 002752 45 EADLKKEIKKLQRYRDQIKTWIQ 67 (885)
Q Consensus 45 E~DLKKEIKKLQR~RDQIKtW~~ 67 (885)
..+|+++|+.|++.|+.|+.++.
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~~~~ 110 (123)
T cd04770 88 LAEVEAKIAELQALRAELAGLLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888889888888877664
No 383
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=31.34 E-value=3.1e+02 Score=27.26 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=3.6
Q ss_pred HHHHHHHHhH
Q 002752 133 SELESQIDSF 142 (885)
Q Consensus 133 deL~~QiE~~ 142 (885)
.+|+.||+.|
T Consensus 121 ~~l~~qv~~~ 130 (141)
T PRK08476 121 EQLLSQMPEF 130 (141)
T ss_pred HHHHHhHHHH
Confidence 3333333333
No 384
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=31.31 E-value=3.9e+02 Score=29.00 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 002752 41 KEKFEADLKK 50 (885)
Q Consensus 41 KEKlE~DLKK 50 (885)
|++||.+=|+
T Consensus 127 Kk~Ye~~Cke 136 (240)
T cd07672 127 KKNYEQKCRD 136 (240)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 385
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=31.31 E-value=48 Score=33.72 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCC--ChhhhhhhhhHHHHHHHhCCCCcc
Q 002752 163 HLETSITRHKAHIMKLELILRLLDNDEL--SPEQVNDVKDLLEDYVERNQDDFE 214 (885)
Q Consensus 163 ~le~~ieRhk~Hi~kLE~lLRlL~N~~l--dpe~V~~IKddIeyYVE~nqdDf~ 214 (885)
.|+..|...+.| .-..|+.+|+-+.| +.+.|-.|.|-|+.+-|++..-|.
T Consensus 86 ai~~al~~akak--n~~av~allD~d~l~l~~dg~~Gldeqi~~lkes~~yLF~ 137 (155)
T PF06810_consen 86 AIKSALKGAKAK--NPKAVKALLDLDKLKLDDDGLKGLDEQIKALKESDPYLFE 137 (155)
T ss_pred HHHHHHHHcCCC--CHHHHHHhcCHHHeeeCCCccccHHHHHHHHHhcCchhcc
Confidence 355555544443 46678888988875 567788888888888887655554
No 386
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=31.05 E-value=1.6e+02 Score=30.02 Aligned_cols=54 Identities=22% Similarity=0.460 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHH---HHHHHHHH-------HHHHHHhhhccc
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLK---KEIKKLQR-------YRDQIKTWIQSS 69 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLK---KEIKKLQR-------~RDQIKtW~~s~ 69 (885)
|++++.-....|+....-|+++ ..+++.|+.+|+ ++|+.|+. ++.+|..|...+
T Consensus 4 i~~Im~~~gk~i~~~K~~~~~~-----~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 4 IDKIMAENGKDIEAPKAKVDKV-----KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHccCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4555555555554444444444 235666666554 34444443 555666666553
No 387
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=31.00 E-value=17 Score=28.69 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.3
Q ss_pred hhhhhhhhHHHHHHHhCCCCcc
Q 002752 193 EQVNDVKDLLEDYVERNQDDFE 214 (885)
Q Consensus 193 e~V~~IKddIeyYVE~nqdDf~ 214 (885)
+.+++|-|+|+..+|.|.++|+
T Consensus 3 ~~~D~lLDeId~vLe~NAe~FV 24 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNAEEFV 24 (33)
T ss_pred chHHHHHHHHHHHHHHhHHHHH
Confidence 5789999999999999988764
No 388
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.96 E-value=4.8e+02 Score=28.45 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHH
Q 002752 127 WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKL 178 (885)
Q Consensus 127 wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kL 178 (885)
-|+.=|..|+.-|-..+.|.+... ..+..+..-..+.+.+|..|
T Consensus 57 qI~~DIn~lE~iIkqa~~er~~~~--------~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 57 QINQDINTLENIIKQAESERNKRQ--------EKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666643320 11122333445556666655
No 389
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=30.91 E-value=3.8e+02 Score=33.54 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=11.3
Q ss_pred HHHHHHHHHhHHHHhhhh
Q 002752 132 VSELESQIDSFEAELEGL 149 (885)
Q Consensus 132 IdeL~~QiE~~EaEiE~L 149 (885)
|+.|+.+++.+++++..+
T Consensus 243 i~~l~~~l~~l~~~~~~l 260 (670)
T KOG0239|consen 243 IQALQQELEELKAELKEL 260 (670)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666665554
No 390
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=30.89 E-value=1.2e+02 Score=32.32 Aligned_cols=49 Identities=14% Similarity=0.396 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHhhhCCCCChhhhhhhhhHHHHHHHhCC
Q 002752 162 THLETSITRHKAHIMKLEL---ILRLLDNDELSPEQVNDVKDLLEDYVERNQ 210 (885)
Q Consensus 162 ~~le~~ieRhk~Hi~kLE~---lLRlL~N~~ldpe~V~~IKddIeyYVE~nq 210 (885)
.-+..+++-|++=+..|.. ++.++.||.|++++|.+|-|.|..|++..-
T Consensus 8 ~~i~~lvEeH~yIlraL~iLr~~~~~~~~g~i~y~~v~~iidFi~nfaDkcH 59 (189)
T COG3945 8 DSIKLLVEEHTYILRALSILRKALDLIKNGPIDYSDVKEIIDFIRNFADKCH 59 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 3455677888776666554 466778899999999999999999998653
No 391
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=30.83 E-value=1.5e+02 Score=30.78 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK 72 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIK 72 (885)
+++.-++..|=.-.=-.+|.++++.=.+.||.+|..-+.+.+.+||+ |-.|+.++..|
T Consensus 105 ~~kma~~~~e~~v~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~----~~~~~~~~~~~ 162 (162)
T PRK12751 105 AEKMSQNQIERHVEMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQ----KPAAQPSSAQK 162 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh----ccccccCccCC
Confidence 34433333333333345666666666899999999999988777753 66787776543
No 392
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=30.79 E-value=1.1e+02 Score=35.13 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 002752 122 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDND 188 (885)
Q Consensus 122 ~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~ 188 (885)
.+..+-|..-|++|+.+|+.++..++... +...++.+++..++++.-.|..++.++.--.++
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~ 302 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP-----KKKNKLKELEEQLASLEKRIEEAEELIAEYGDE 302 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 44455566667777777777777666653 223356778888888888888888877644333
No 393
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=30.77 E-value=5.8e+02 Score=28.33 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc------------CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHH
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVYD------------TDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALV 78 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~iyeK~~~------------a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~ 78 (885)
--+.||+|.+-...|+..-.+-.. .-++.|.+|+.+-|+|....+++.++.-..=+ ..|.
T Consensus 128 w~k~~kk~~~sKk~Y~~~ck~e~~a~~~e~~~k~~~~~~~~q~~K~~~kleK~~~~~~k~~~~Y~~~v--------~~L~ 199 (258)
T cd07681 128 WVKKLKEVESSKKGYHAARKDERTAQTRETHAKADSTVSQEQLRKLQDRVEKCTQEAEKAKEQYEKAL--------EELN 199 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
Confidence 334567777777777654432221 22345677888888888877777655544322 2588
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002752 79 DARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEA 144 (885)
Q Consensus 79 e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~Ea 144 (885)
.+|..-++.|+.. ||+- +..-.+=.+||++++..+++-++....
T Consensus 200 ~~~~~w~e~m~~~--~d~~--------------------Q~~EeeRi~flK~~L~~~~~~l~~~~~ 243 (258)
T cd07681 200 RYNPRYMEDMEQA--FEIC--------------------QEAERKRLCFFKEMLLDLHQHLDLSSS 243 (258)
T ss_pred HhhHHHHHHHHHH--HHHH--------------------HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888888752 2210 111123457888888888888766544
No 394
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.76 E-value=1.8e+02 Score=30.89 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhCCC-C-C---hhhhhhhhhHHHHHHH
Q 002752 173 AHIMKLELILRLLDNDE-L-S---PEQVNDVKDLLEDYVE 207 (885)
Q Consensus 173 ~Hi~kLE~lLRlL~N~~-l-d---pe~V~~IKddIeyYVE 207 (885)
..|.+||.++| +.+. + | -.++..+|+|++|...
T Consensus 93 R~irrLeK~~k--eS~ad~kd~~i~~qlrk~kidL~YVr~ 130 (199)
T KOG4484|consen 93 RSIRRLEKLIK--ESGADVKDKQIQQQLRKLKIDLEYVRF 130 (199)
T ss_pred HHHHHHHHHHH--hhccchhhHHHHHHHHHHHHHHHHHHh
Confidence 35888999999 4333 2 2 3467789999998764
No 395
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=30.72 E-value=2.6e+02 Score=34.80 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 002752 119 KAKSETRDWLNNLV-----------SELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLD- 186 (885)
Q Consensus 119 keK~E~~~wL~~~I-----------deL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~- 186 (885)
.-..|+..|+.... ..|+.-+|+|...++++.. +..+.... -.+-..++|.+-++.|||.||.+|.
T Consensus 188 al~~e~~~~~~~~~~~~~~~~~~d~~~l~vll~qCr~~v~~v~~-~~~~~G~S-v~l~~~L~Rl~Q~L~Ri~~Ll~~l~~ 265 (643)
T PF10136_consen 188 ALQREVEAFLEAYRQQDEDPDSEDLKHLRVLLDQCREQVDRVRK-HLEKYGVS-VSLVFLLERLRQQLDRIELLLDLLVD 265 (643)
T ss_pred HHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHH-hccccCee-HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45566666666544 4456678888888888742 22111111 3567789999999999999999999
Q ss_pred -CCCCChhhhhhhhhHHHHHHH
Q 002752 187 -NDELSPEQVNDVKDLLEDYVE 207 (885)
Q Consensus 187 -N~~ldpe~V~~IKddIeyYVE 207 (885)
...-...-+.-+++-|.+--+
T Consensus 266 ~~~~~~~~~~~L~~~Lv~~~~~ 287 (643)
T PF10136_consen 266 DSPDRRRAIVRLFKELVRAECR 287 (643)
T ss_pred cCchhhHHHHHHHHHHHHHHHH
Confidence 222223333345555544443
No 396
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=30.70 E-value=7.9e+02 Score=28.85 Aligned_cols=20 Identities=5% Similarity=0.062 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhHHHHhhhh
Q 002752 130 NLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 130 ~~IdeL~~QiE~~EaEiE~L 149 (885)
..++..+.+++.+..-++.+
T Consensus 322 ~~L~~k~~rL~~L~~rL~aL 341 (432)
T TIGR00237 322 KQLERTRQKKTRLTKRLTQT 341 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444
No 397
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.70 E-value=2.7e+02 Score=30.72 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=29.5
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002752 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD 36 (885)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~ 36 (885)
..||||++++.+++.|.-.-..|+..+...+.+.
T Consensus 114 ~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~ 147 (252)
T cd07675 114 EGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQ 147 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999998888777653
No 398
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.70 E-value=8.9e+02 Score=30.20 Aligned_cols=155 Identities=22% Similarity=0.308 Sum_probs=76.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChh--hHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNAN--QKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARK 82 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~n--QKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK 82 (885)
-||++||+|+-++..+-- .+|++.++-.= -+|| .|||+....|+-..|-+++=+. +.|..|..+|.
T Consensus 11 e~lr~eierLT~el~q~t------~e~~qaAeyGL~lLeeK--~~Lkqq~eEleaeyd~~R~Eld----qtkeal~q~~s 78 (772)
T KOG0999|consen 11 EKLRQEIERLTEELEQTT------EEKIQAAEYGLELLEEK--EDLKQQLEELEAEYDLARTELD----QTKEALGQYRS 78 (772)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 489999999988776532 24444332211 1233 3788888888877777765432 12334444432
Q ss_pred HHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc-------c--cc
Q 002752 83 LIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLT-------V--KK 153 (885)
Q Consensus 83 ~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~-------~--KK 153 (885)
. -|.-.+.|+.....+=-...+| ..+...-|-+|+..+.+++.+++... . -+
T Consensus 79 ~----------------hkk~~~~g~e~EesLLqESaak---E~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd 139 (772)
T KOG0999|consen 79 Q----------------HKKVARDGEEREESLLQESAAK---EEYYLQKILELENELKQLRQELTNVQEENERLEKVHSD 139 (772)
T ss_pred H----------------HHHhhccchhhHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122234444321111111222 23455556666666666666654432 1 01
Q ss_pred CC-CC----chhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 002752 154 GK-TR----PPRLTHLETSITRHKAHIMKLELILRLLDNDELS 191 (885)
Q Consensus 154 ~K-~~----~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ld 191 (885)
-| .+ .+|+ .|+.-|.-.||.-.+|=.=.--|+.+.|.
T Consensus 140 ~~e~~~~~E~qR~-rlr~elKe~KfRE~RllseYSELEEENIs 181 (772)
T KOG0999|consen 140 LKESNAAVEDQRR-RLRDELKEYKFREARLLSEYSELEEENIS 181 (772)
T ss_pred hhhcchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 11 11 1122 34455556666666665555555555555
No 399
>smart00721 BAR BAR domain.
Probab=30.62 E-value=2.3e+02 Score=29.04 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCChhh------HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ------KEKFEADLKKEIKKLQRYRDQIKTWIQ 67 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQ------KEKlE~DLKKEIKKLQR~RDQIKtW~~ 67 (885)
.+|.++.||..--...||....|+.++..... -++.|.+|+.--.+...++++++.=+.
T Consensus 134 ~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~ 198 (239)
T smart00721 134 KEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELP 198 (239)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888888875533221 123556666666666666666554443
No 400
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=30.57 E-value=4.4e+02 Score=27.81 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 002752 164 LETSITRHKAHIMKLELILRLL 185 (885)
Q Consensus 164 le~~ieRhk~Hi~kLE~lLRlL 185 (885)
-...+++.+.|..+|+.+.+-+
T Consensus 129 ~~~~~~~l~~H~~kl~~~~ke~ 150 (177)
T PF03234_consen 129 GKAELEELQEHRAKLEKEQKEL 150 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888887776643
No 401
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=30.49 E-value=3.5e+02 Score=28.19 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhHHHHhhhh
Q 002752 129 NNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 129 ~~~IdeL~~QiE~~EaEiE~L 149 (885)
...++.|..+++.++..++.|
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l 117 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKL 117 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555
No 402
>PRK04406 hypothetical protein; Provisional
Probab=30.47 E-value=1.6e+02 Score=26.82 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 131 LVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLL 185 (885)
Q Consensus 131 ~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL 185 (885)
+|+.|+..|+.+|..+-=+ ...|++|...+-+..-.|.+|+.-|++|
T Consensus 5 ~~~~le~Ri~~LE~~lAfQ--------E~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQ--------EQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred hHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666555554222 2345566666677777777777777766
No 403
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=30.46 E-value=1e+03 Score=28.63 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002752 41 KEKFEADLKKEIKKLQRYRDQI 62 (885)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQI 62 (885)
+..|+..|+.-=++|++||++|
T Consensus 213 ~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 213 AEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777778889999998
No 404
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=30.40 E-value=2.2e+02 Score=34.80 Aligned_cols=35 Identities=11% Similarity=0.439 Sum_probs=23.1
Q ss_pred HHHHHHH------HHHHHHHHHHHHHHHHhhhccccchhhH
Q 002752 41 KEKFEAD------LKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (885)
Q Consensus 41 KEKlE~D------LKKEIKKLQR~RDQIKtW~~s~dIKDK~ 75 (885)
|++|+.+ .+.|.++|...=++...|+..++-.+++
T Consensus 552 r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~ 592 (653)
T PTZ00009 552 KNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKE 592 (653)
T ss_pred HHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence 6777543 3455667777778888899876544443
No 405
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=30.40 E-value=4.2e+02 Score=24.04 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKE 97 (885)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe 97 (885)
+.|-..|.+|..+|+++++-..-+-.=+.++-..+|...||.|..-.++.+.+++.
T Consensus 31 ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R 86 (92)
T PF14712_consen 31 EELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKR 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999984444422233446678999999999988888877654
No 406
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.39 E-value=3.4e+02 Score=27.14 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhHHHHhhhh
Q 002752 131 LVSELESQIDSFEAELEGL 149 (885)
Q Consensus 131 ~IdeL~~QiE~~EaEiE~L 149 (885)
++++|+.++|.+|-.++.|
T Consensus 71 ~~~eL~er~E~Le~ri~tL 89 (119)
T COG1382 71 AVDELEERKETLELRIKTL 89 (119)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 407
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=30.15 E-value=3.8e+02 Score=34.04 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002752 162 THLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 207 (885)
Q Consensus 162 ~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE 207 (885)
++++..-+||..-+.+|-..+..|.+. ..++-.+++|++..|.+
T Consensus 233 ~~~~~~k~rl~~d~E~Lr~e~~qL~~~--~~~~~~~mrd~~~~~~e 276 (916)
T KOG0249|consen 233 EEMRHDKDKLRTDIEDLRGELDQLRRS--SLEKEQELRDHLRTYAE 276 (916)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH--HHhhhhhhcchhhhhHH
Confidence 333333345555555555555555531 12233344455555544
No 408
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=29.89 E-value=4.3e+02 Score=24.04 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=17.1
Q ss_pred HHHHHHHHhhhccccc--hhhHHHHHHHHHHHHHHHH
Q 002752 56 QRYRDQIKTWIQSSEI--KDKKALVDARKLIEREMER 90 (885)
Q Consensus 56 QR~RDQIKtW~~s~dI--KDK~~L~e~RK~IE~~MEr 90 (885)
+..+.+++.|+....- -.+.......+.|+..|++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~ 72 (105)
T PF12998_consen 36 EELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYER 72 (105)
T ss_dssp HHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHH
Confidence 3445556666665544 1222444455555555554
No 409
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=29.73 E-value=1.3e+02 Score=33.25 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=26.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKK 50 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKK 50 (885)
++||+|++++++.+.---..|+.....+..+ |+|++.-.++
T Consensus 120 ~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~a-----r~K~~~a~~~ 160 (264)
T cd07654 120 QRAQAEVQQTVRELSKSRKTYFEREQVAHLA-----REKAADVQAR 160 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 5778888888887777777776655533322 6777654333
No 410
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.65 E-value=2.3e+02 Score=27.19 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 118 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 118 ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
|....++..+|.+-|+.|+++++.++.++..+
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l 113 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKL 113 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778899999999999999999998887665
No 411
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.58 E-value=5e+02 Score=27.82 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=20.0
Q ss_pred CchhhHHHHHHH--HHHHHHHHHHHHHHHh
Q 002752 157 RPPRLTHLETSI--TRHKAHIMKLELILRL 184 (885)
Q Consensus 157 ~~~r~~~le~~i--eRhk~Hi~kLE~lLRl 184 (885)
++.-+++++..+ +|+.|+-..|+.|+.+
T Consensus 131 k~~e~~Ea~~~l~~~R~~F~~~~ldYV~~i 160 (200)
T cd07639 131 KAQEVEEAAAALLGARATFRDRALDYALQI 160 (200)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544 7899999999999863
No 412
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=29.30 E-value=2.3e+02 Score=30.41 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 002752 48 LKKEIKKLQRYRDQIKTWIQS 68 (885)
Q Consensus 48 LKKEIKKLQR~RDQIKtW~~s 68 (885)
|++||.-|+.+.++++..+.+
T Consensus 61 l~~e~e~L~~~~~~l~~~v~~ 81 (251)
T PF11932_consen 61 LEREIENLEVYNEQLERQVAS 81 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666655554
No 413
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=29.29 E-value=9e+02 Score=27.60 Aligned_cols=64 Identities=23% Similarity=0.361 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCC---CccccCCCcccccCCCCCCcc
Q 002752 167 SITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD---DFEEFSDVDELYHLLPLDKVE 232 (885)
Q Consensus 167 ~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~nqd---Df~ef~dde~iYd~L~Lde~~ 232 (885)
+-...+--|..||...+..+. -.-+++...|+.+|.+++.--+ ..++|.-....-.+|+|-+.+
T Consensus 253 ~Sn~lk~TIseLEKkFkIdd~--tn~~e~k~fK~qlE~ladqLl~ks~~id~f~tvt~~~~df~l~ele 319 (353)
T PF01540_consen 253 HSNKLKATISELEKKFKIDDS--TNKEEMKKFKNQLENLADQLLEKSRQIDEFVTVTSAQEDFSLSELE 319 (353)
T ss_pred HHHHHHHHHHHHHHhhccccc--cchhHHHHHHHHHHHHHHHHHHhhcccchheeeecccccccHHHHH
Confidence 334455667788876664432 2346777888888888754211 223555567777788887664
No 414
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=29.04 E-value=1.8e+02 Score=29.33 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhh
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQV 195 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V 195 (885)
..++|.++++.|+.=|+.-+.| .+.......-+..+|+.|.++|....|+++++
T Consensus 22 ~~e~Lee~~ekl~~vv~er~~~------------------~~~~~~~~~er~~~l~~i~~~~~~~Git~eeL 75 (134)
T PRK10328 22 SIDVLEEMLEKFRVVTKERREE------------------EEQQQRELAERQEKINTWLELMKADGINPEEL 75 (134)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3445555555555555444433 33344555667789999999999999999877
No 415
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=28.97 E-value=1.8e+02 Score=29.28 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCChhhh
Q 002752 166 TSITRHKAHIMKLELILRLLDNDELSPEQV 195 (885)
Q Consensus 166 ~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V 195 (885)
........+..+|+.+..+|....|+++++
T Consensus 46 ~~~~~~~er~~kl~~~r~~m~~~Gis~~eL 75 (135)
T PRK10947 46 AAAAEVEERTRKLQQYREMLIADGIDPNEL 75 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 334445567779999999999999998877
No 416
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=28.82 E-value=4.4e+02 Score=24.71 Aligned_cols=57 Identities=16% Similarity=0.416 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 002752 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK 72 (885)
Q Consensus 10 EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIK 72 (885)
+++..|+++.--|+.++.-.+......... ++|..||.+|+--|..+-.=+...+..
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~------~~~e~ei~~l~~dr~rLa~eLD~~~ar 61 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR------DELEEEIQRLDADRSRLAQELDQAEAR 61 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 567777777777777766554443322222 788889999988777776655554444
No 417
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=28.80 E-value=1.3e+03 Score=30.00 Aligned_cols=129 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred hHHHHHHHHHH---HHHHHHHHHHHhhcCCChhhHHHHHHHHHH-------HHHHHHHHHHHHHhhhccccchhhHHHHH
Q 002752 10 EIDRVLKKVQE---GVDVFDSIWNKVYDTDNANQKEKFEADLKK-------EIKKLQRYRDQIKTWIQSSEIKDKKALVD 79 (885)
Q Consensus 10 EIDr~lKKV~E---Gve~Fd~iyeK~~~a~n~nQKEKlE~DLKK-------EIKKLQR~RDQIKtW~~s~dIKDK~~L~e 79 (885)
+||.+.|||.- --+..+..|+++..+ -|+|-.+|-. |.|+|+|.-+-. |+.-|+.=.|
T Consensus 876 ~id~lv~~IK~~~~tq~~~~~~~d~~~~~-----~e~~~~~l~sk~~q~~~e~er~rk~qE~~-------E~ER~rrEae 943 (1259)
T KOG0163|consen 876 QIDDLVKKIKMPRITQREMNSEYDVAVKN-----YEKLVKRLDSKEQQQIEELERLRKIQELA-------EAERKRREAE 943 (1259)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHH-----HHHHHHHhhhhHHHHHHHHHHHHHHHHHH-------HHHHHhhhhh
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCch
Q 002752 80 ARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPP 159 (885)
Q Consensus 80 ~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~ 159 (885)
-.+.-|+.-++=-..|+|+|.|+ +|+.+..-.+.=...+-+++.|+..--.|
T Consensus 944 ek~rre~ee~k~~k~e~e~kRK~--------------eEeqr~~qee~e~~l~~e~q~qla~e~ee-------------- 995 (1259)
T KOG0163|consen 944 EKRRREEEEKKRAKAEMETKRKA--------------EEEQRKAQEEEERRLALELQEQLAKEAEE-------------- 995 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhhhHHHHHHHHHHHHHHHHHHH--------------
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 002752 160 RLTHLETSITRHKAHIMKLELILRL 184 (885)
Q Consensus 160 r~~~le~~ieRhk~Hi~kLE~lLRl 184 (885)
+.-.+++...+++...|-+
T Consensus 996 ------e~k~q~~~Eqer~D~~la~ 1014 (1259)
T KOG0163|consen 996 ------EAKRQNQLEQERRDHELAL 1014 (1259)
T ss_pred ------HHHHHhHHHHHHHHHHHHH
No 418
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=28.79 E-value=5.2e+02 Score=24.61 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 120 AKSETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 120 eK~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
.-......|...|..+..+++.++.++|..
T Consensus 65 ~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~ 94 (141)
T TIGR02473 65 NYQRFIRQLDQRIQQQQQELALLQQEVEAK 94 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888888888888888876
No 419
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=28.60 E-value=1.3e+02 Score=35.57 Aligned_cols=64 Identities=30% Similarity=0.387 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhccccCCC---CchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 002752 126 DWLNNLVSELESQIDSFEAELEGLTVKKGKT---RPPRLTHLETSITRHKAHIMKLELILRLLDNDELS 191 (885)
Q Consensus 126 ~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~---~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ld 191 (885)
+-|++=+++|+.|++.++..++.+.. +.. ...+++.++..+...+-++..|+.+|+-|......
T Consensus 166 ~L~~~Rl~~L~~qi~~~~~~l~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 232 (475)
T PF10359_consen 166 ELIQERLDELEEQIEKHEEKLGELEL--NPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESS 232 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 45677788999999999988888744 211 12467777777888888888888888887766543
No 420
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=28.59 E-value=19 Score=44.08 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSIWNK 31 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~iyeK 31 (885)
.++..+++.++++.+-...-..++++
T Consensus 97 ~l~~~~~~~~~~~~ele~~~~~l~~~ 122 (722)
T PF05557_consen 97 ELQRQLEREFKRNQELEARLKQLEER 122 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444443333
No 421
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=28.51 E-value=2.7e+02 Score=25.07 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=26.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN 37 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n 37 (885)
=|.||.++|-++.+--+-||.--.-+....-
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~~~c 35 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIATGC 35 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHhCC
Confidence 4889999999999999999998888876544
No 422
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=28.51 E-value=5.6e+02 Score=27.89 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=15.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 002752 115 DPKEKAKSETRDWLNNLVSELES 137 (885)
Q Consensus 115 DP~ekeK~E~~~wL~~~IdeL~~ 137 (885)
++...-+.+...|+...|+.|..
T Consensus 202 ~~~~~lr~~~~~~l~~~i~~L~~ 224 (367)
T PF04286_consen 202 DPDHPLRQEIDQKLRELIERLLT 224 (367)
T ss_pred CcccHhHHHHHHHHHHHHHHHhc
Confidence 45556666777777777777764
No 423
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=28.48 E-value=2.2e+02 Score=29.46 Aligned_cols=83 Identities=14% Similarity=0.248 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhccc------------------cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002752 126 DWLNNLVSELESQIDSFEAELEGLTVK------------------KGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 187 (885)
Q Consensus 126 ~wL~~~IdeL~~QiE~~EaEiE~L~~K------------------K~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N 187 (885)
+++...+++.+.++..++.-+.++... --++.+.|+.+++..+..|---..+|=.--..|++
T Consensus 71 ~~~~~~l~ea~~~i~~i~~~~~~i~~~~~~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~ 150 (199)
T PF10112_consen 71 EYIREILEEAKEKIRRIEKAIKRIRDLEMIEKVSRIEKIARRIFKYVEKDPERLTQARKFLYYYLPTAVKLLEKYAELES 150 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 356667777777777777666554210 11233445555554444333333332222334566
Q ss_pred CCCChhhhhhhhhHHHHHHHh
Q 002752 188 DELSPEQVNDVKDLLEDYVER 208 (885)
Q Consensus 188 ~~ldpe~V~~IKddIeyYVE~ 208 (885)
..+..+++...+++++.-++.
T Consensus 151 ~~~~~~~~~~~l~e~~~~L~~ 171 (199)
T PF10112_consen 151 QPVKSEEIKQSLEEIEETLDT 171 (199)
T ss_pred ccCCChhHHHHHHHHHHHHHH
Confidence 666666666666666655543
No 424
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=28.45 E-value=98 Score=34.52 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=12.2
Q ss_pred cccchhhhHHHHHHHHHH
Q 002752 3 ASRKLQGEIDRVLKKVQE 20 (885)
Q Consensus 3 a~RKLQ~EIDr~lKKV~E 20 (885)
..+-|+.|+++..|+.-|
T Consensus 60 ~~k~L~aE~~qwqk~~pe 77 (268)
T PF11802_consen 60 RVKCLTAELEQWQKRTPE 77 (268)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 345578888887777544
No 425
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=28.39 E-value=3.1e+02 Score=27.61 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHH
Q 002752 118 EKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSI 168 (885)
Q Consensus 118 ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~i 168 (885)
++-|.++..-|...|..|..+++.||.+.-++-..-.|.....+..+...+
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~ 65 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQF 65 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 344555666666666666666666666655443222333334444444433
No 426
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=28.39 E-value=9.8e+02 Score=27.74 Aligned_cols=124 Identities=23% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHH-HHHHHHHHhhhcc----ccchhhH----HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHH
Q 002752 51 EIKKL-QRYRDQIKTWIQS----SEIKDKK----ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAK 121 (885)
Q Consensus 51 EIKKL-QR~RDQIKtW~~s----~dIKDK~----~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK 121 (885)
||.|| |-.|+-=-.-|++ |.|.|-. .|.|-||.+|++.-|-|+.=---=+ ...||-=...+|+=| -|.=
T Consensus 36 EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~-vvANEWKD~nDkvMP-VKqW 113 (351)
T PF07058_consen 36 EVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELARAKVSANRVAT-VVANEWKDENDKVMP-VKQW 113 (351)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-hhcccccccCCcccc-HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHH-HHHHHHHHHHHHHHHhhhCCCCCh
Q 002752 122 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSI-TRHKAHIMKLELILRLLDNDELSP 192 (885)
Q Consensus 122 ~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~i-eRhk~Hi~kLE~lLRlL~N~~ldp 192 (885)
-|-+.||+.=|..|+..+--.|.- ...+..+ ++.+..+.-||-=||...++...+
T Consensus 114 LEERR~lQgEmQ~LrDKLAiaERt----------------AkaEaQLkeK~klRLK~LEe~Lk~~~s~~~~~ 169 (351)
T PF07058_consen 114 LEERRFLQGEMQQLRDKLAIAERT----------------AKAEAQLKEKLKLRLKVLEEGLKGSSSNSSRP 169 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
No 427
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=28.32 E-value=1.4e+02 Score=33.09 Aligned_cols=47 Identities=19% Similarity=0.433 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHH
Q 002752 8 QGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYR 59 (885)
Q Consensus 8 Q~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~R 59 (885)
|+.|+.+++-|.|-++.|+.--++++.. ..+--+.|+++|++|+...
T Consensus 1 ~~~l~~l~~pl~e~l~~~~~~l~~~~~~-----~~~~~~~L~~~l~~l~~~~ 47 (304)
T PF02646_consen 1 QEQLEQLLKPLKEQLEKFEKRLEESFEQ-----RSEEFGSLKEQLKQLSEAN 47 (304)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999888766655332 2334477888887777776
No 428
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=28.23 E-value=4.3e+02 Score=31.47 Aligned_cols=62 Identities=8% Similarity=0.187 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 002752 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDN-ANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEI 71 (885)
Q Consensus 10 EIDr~lKKV~EGve~Fd~iyeK~~~a~n-~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dI 71 (885)
+.+...+.+.+-++..+..|+++..... ...++.+-.++++..+...+.++.+..++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~l~~l~~~~~~ 148 (554)
T PRK15041 86 TVAELMQSASISLKQAEKNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGKI 148 (554)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 4566677777777777788887776543 3344456677888777777777777777766553
No 429
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=28.16 E-value=1.3e+03 Score=29.24 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHH----HHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHH
Q 002752 52 IKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREME----RFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDW 127 (885)
Q Consensus 52 IKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~ME----rFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~w 127 (885)
-++++.+++||.+--+..+ .+...=+.+|.+|- .+--++++.++..-+.|-+.. .-.+-..-.+|
T Consensus 502 ~~ek~~l~~~i~~l~~~~~-----~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk------~~~e~~~~~~~ 570 (698)
T KOG0978|consen 502 REEKSKLEEQILTLKASVD-----KLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKK------KAQEAKQSLED 570 (698)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 3566777888877655533 23333344555542 233455555555555544422 11111223445
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHH
Q 002752 128 LNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYV 206 (885)
Q Consensus 128 L~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYV 206 (885)
|+--.+..+.+++.++..+..+.. .++.+.....|..--+.+|-..|+.+.++..-..-...+.+.|..|-
T Consensus 571 Lq~~~ek~~~~le~i~~~~~e~~~--------ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK 641 (698)
T KOG0978|consen 571 LQIELEKSEAKLEQIQEQYAELEL--------ELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYK 641 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 555555555555555444433210 11111112222333344555566666666663333344455555554
No 430
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=28.12 E-value=2.4e+02 Score=27.60 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHH
Q 002752 56 QRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERF 91 (885)
Q Consensus 56 QR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErF 91 (885)
.+++.+||..+..+.-.-.+.++..++.+|..++++
T Consensus 25 ~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~ 60 (171)
T PF03357_consen 25 KKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKL 60 (171)
T ss_dssp HHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777766333445666666677666664
No 431
>KOG3270 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.04 E-value=97 Score=34.16 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 002752 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKI 93 (885)
Q Consensus 17 KV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~ 93 (885)
|..|+-+-|++.++-|..-.+-.+.-+...||.++++||+|.- ..|-- .|++.|...+..-+.|+.
T Consensus 89 r~~d~~~Q~i~lldQv~~l~~l~~~~~~~e~L~~~~e~l~r~n----------l~~~p-~l~el~~~~~~~~t~~~~ 154 (244)
T KOG3270|consen 89 RDKDAEEQFIELLDQVQKLNGLEVARKIQEKLVKSVEKLAREN----------LEKEP-ALVELRNQASDIFTQLEN 154 (244)
T ss_pred hchhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccc----------hhhcc-chHHHHhhhhhhhhhhhc
Confidence 4678888999999999888776654488889999999998742 12211 688999998888777754
No 432
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=28.04 E-value=2.2e+02 Score=26.37 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=32.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002752 5 RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIK 63 (885)
Q Consensus 5 RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIK 63 (885)
.|||.=|..|+..+.|.-+... ...+..+|+.|+.-=++--.-|.-||.-||
T Consensus 12 EkLQ~mi~nTieNi~eAee~l~-------~~~~~~~~~~i~eKN~RR~esi~~~R~EIk 63 (73)
T PRK03830 12 EKLQEMIQNTIENIEEAEETIA-------EEDSEKEKQAIEEKNERREESIDGMRSEIK 63 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5888888888888877766554 344556666666544444444444554443
No 433
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=28.03 E-value=1.2e+03 Score=28.79 Aligned_cols=231 Identities=23% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccchhhHHHHHHHHHHH
Q 002752 7 LQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS-SEIKDKKALVDARKLIE 85 (885)
Q Consensus 7 LQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s-~dIKDK~~L~e~RK~IE 85 (885)
|-.||+.+=|||+=-++.|.-. |=|||--|||- +|+.+.++|||..-.- +-.--+..|+-+-..|-
T Consensus 59 L~~eI~~LK~~~q~s~d~y~kY------------KLKLeR~~~Kk-~ki~~sk~~ik~lt~lK~~L~~r~n~lN~p~~vl 125 (574)
T PF07462_consen 59 LGEEIEELKKKIQVSLDHYGKY------------KLKLERLLKKK-NKISNSKEQIKKLTILKNKLERRQNLLNNPTSVL 125 (574)
T ss_pred HHHHHHHHHHHHHhhhhhhhhH------------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHH
Q ss_pred HHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHH-----------------------HHHHHHHHHhH
Q 002752 86 REMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNL-----------------------VSELESQIDSF 142 (885)
Q Consensus 86 ~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~-----------------------IdeL~~QiE~~ 142 (885)
.-.--| |-|- +|.||.|+..-|+++ |.+-.-|-|..
T Consensus 126 ~n~~vf-----------FnKk----------rEaek~eveNtlkNt~iLlkyYKa~~Kyy~gE~~PLKTlSe~SlqkEdN 184 (574)
T PF07462_consen 126 KNFTVF-----------FNKK----------REAEKKEVENTLKNTEILLKYYKARAKYYIGEPFPLKTLSEESLQKEDN 184 (574)
T ss_pred HHHHHH-----------Hhhh----------hHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcccccccHHHHhhhhh
Q ss_pred HHHhhhhcc------ccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-hhhhhhhhhHHHHHHHhCCCCccc
Q 002752 143 EAELEGLTV------KKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELS-PEQVNDVKDLLEDYVERNQDDFEE 215 (885)
Q Consensus 143 EaEiE~L~~------KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ld-pe~V~~IKddIeyYVE~nqdDf~e 215 (885)
=.-+|+..+ |.||.=.=..+.|-..-.-...-+.-|-.|+..-.---=+ ++-+.++++.++.|-|
T Consensus 185 ylnlEkFrvlSrlEgrl~~Ni~LeKenIsYlSsgLhHv~tElKeii~nK~YtG~~~~~n~~~Vk~ALq~YqE-------- 256 (574)
T PF07462_consen 185 YLNLEKFRVLSRLEGRLGKNINLEKENISYLSSGLHHVFTELKEIIKNKKYTGNDHAKNIAEVKEALQAYQE-------- 256 (574)
T ss_pred hhhHHHHHHHHHHHHHhccccccchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCChhhhHHHHHHHHHHHHH--------
Q ss_pred cCCCcccccCCCCCCccccccccccCCCCCcCCCchhhhhhhhccccCCCCcccccccccCCcccccCccccccCCCCCc
Q 002752 216 FSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNSDV 295 (885)
Q Consensus 216 f~dde~iYd~L~Lde~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 295 (885)
+.-+....++
T Consensus 257 ------------------------------------LLPKvtTQeA---------------------------------- 266 (574)
T PF07462_consen 257 ------------------------------------LLPKVTTQEA---------------------------------- 266 (574)
T ss_pred ------------------------------------hCCCCCCCCC----------------------------------
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCccccccCccccCCCCCCCCCCCCCCCccCCCCCCCCCCCC
Q 002752 296 AARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS 360 (885)
Q Consensus 296 ~~~t~p~k~~~~~s~~~~p~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 360 (885)
.+.+.+||++..+++++.+++..+.+.+++.++..|++.++.|..+.++..++.
T Consensus 267 -----------asaAAaTp~aa~pa~apea~t~eAa~gAAagaa~apTagsVpG~gatATEtqT~ 320 (574)
T PF07462_consen 267 -----------ASAAAATPPAAVPAPAPEAPTPEAAPGAAAGAAPAPTAGSVPGEGATATETQTQ 320 (574)
T ss_pred -----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccch
No 434
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=27.97 E-value=2.4e+02 Score=35.54 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHhhhc
Q 002752 40 QKEKFEADLKKEIKKLQR---YRDQIKTWIQ 67 (885)
Q Consensus 40 QKEKlE~DLKKEIKKLQR---~RDQIKtW~~ 67 (885)
-+.|+...+|++|-|-|| +|+|||.-..
T Consensus 209 l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~ 239 (784)
T PRK10787 209 VEKRIRNRVKKQMEKSQREYYLNEQMKAIQK 239 (784)
T ss_pred HHHHHHHHHHHHHhhhhhhhcchhhhhhhcc
Confidence 467778888888888888 7999987654
No 435
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=27.94 E-value=79 Score=28.15 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhhCCCCChhh-hhhhhhHHHHHHHhCC
Q 002752 174 HIMKLELILRLLDNDELSPEQ-VNDVKDLLEDYVERNQ 210 (885)
Q Consensus 174 Hi~kLE~lLRlL~N~~ldpe~-V~~IKddIeyYVE~nq 210 (885)
-+.+||.|++.|++|+|+-|+ +.-.++-++.+-.+++
T Consensus 6 ~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~ 43 (67)
T TIGR01280 6 ALSELEQIVQKLESGDLALEEALNLFERGMALARRCEK 43 (67)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999554 4456777766655543
No 436
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=27.77 E-value=4.8e+02 Score=28.52 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccch--hhHHHHHHHHHHHHH
Q 002752 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIK--DKKALVDARKLIERE 87 (885)
Q Consensus 10 EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIK--DK~~L~e~RK~IE~~ 87 (885)
||-+..|||.--.-.||..-.|+..+.+...|--.|.+|+.-=-|+-+-.+--+.-+ ..|. +-..|...+.+||.+
T Consensus 134 ~i~k~RKkLe~rRLdyD~~K~r~~kAk~~~~~~~~e~elr~ae~efees~E~a~~~m--~~i~~~~~e~~~~L~~lv~AQ 211 (229)
T cd07616 134 TITKERKLLQNKRLDLDAAKTRLKKAKVAEARAAAEQELRITQSEFDRQAEITRLLL--EGISSTHAHHLRCLNDFVEAQ 211 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhcchHHHHHHHHHHHHHHHHHHHHHH--HhhhhcChHHHHHHHHHHHHH
Confidence 555566666666666666666666554433222233333332223322222222211 1222 334666677777777
Q ss_pred HHHHHHHHhh
Q 002752 88 MERFKICEKE 97 (885)
Q Consensus 88 MErFK~vEKe 97 (885)
++=||.|=..
T Consensus 212 l~Yh~~~~e~ 221 (229)
T cd07616 212 MTYYAQCYQY 221 (229)
T ss_pred HHHHHHHHHH
Confidence 7777766443
No 437
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=27.77 E-value=3e+02 Score=24.00 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhhH---HHHHHHHHHHHHHHHHHHH
Q 002752 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKK---ALVDARKLIEREMERFKIC 94 (885)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~dIKDK~---~L~e~RK~IE~~MErFK~v 94 (885)
-|.|+|.||++.-+.+..=+++...-.|. .....|...+.-.+....+
T Consensus 8 rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l 58 (66)
T PF10458_consen 8 RLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKL 58 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666677777776665554 3444444444444443333
No 438
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=27.56 E-value=7.2e+02 Score=25.91 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 002752 124 TRDWLNNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
...=|...++++..+++.++..+..+.
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~ 125 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELE 125 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666553
No 439
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=27.54 E-value=3.1e+02 Score=29.50 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHH-HHHHHHHHHHHHHHHHHHhhhCCC-CChhhhhh---hhhH
Q 002752 127 WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLE-TSITRHKAHIMKLELILRLLDNDE-LSPEQVND---VKDL 201 (885)
Q Consensus 127 wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le-~~ieRhk~Hi~kLE~lLRlL~N~~-ldpe~V~~---IKdd 201 (885)
=|..-...|.++++.+..|+.++..-+.-.. ..+.+++ .+.+--+.-+.+++.|...+...- +++++|+. |=+|
T Consensus 120 el~kklnslkk~~e~lr~el~k~~e~dpqv~-~k~~~~~K~~~eaanrwtDnI~il~dy~~rkf~~e~nqi~~~fgIPed 198 (203)
T KOG3433|consen 120 ELTKKLNSLKKILESLRWELAKIQETDPQVF-EKKVHLEKTMAEAANRWTDNIFILIDYLYRKFGLEPNQIRKEFGIPED 198 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhcCCCHHHHhHhcCCCcc
Confidence 5666677777778888888777632111000 1112222 233445555777777777774444 66777664 4444
Q ss_pred HH
Q 002752 202 LE 203 (885)
Q Consensus 202 Ie 203 (885)
++
T Consensus 199 ~d 200 (203)
T KOG3433|consen 199 FD 200 (203)
T ss_pred cc
Confidence 44
No 440
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=27.45 E-value=3.1e+02 Score=33.17 Aligned_cols=51 Identities=29% Similarity=0.350 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCC
Q 002752 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ 111 (885)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~ 111 (885)
+||+|.-.-+.+||-+. +.|.+-||+=-.--.|||. |-|+|---+|.|...
T Consensus 532 ELkmd~lrerelresle-----------kql~~ErklR~~~qkr~kk---Ekk~k~k~qe~L~~~ 582 (641)
T KOG3915|consen 532 ELKMDFLRERELRESLE-----------KQLAMERKLRAIVQKRLKK---EKKAKRKLQEALEFE 582 (641)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhc
Confidence 45555555555555543 3455544443222234443 444444445555543
No 441
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=27.38 E-value=3.7e+02 Score=27.45 Aligned_cols=30 Identities=27% Similarity=0.628 Sum_probs=24.5
Q ss_pred ccchhhhHHHHHHHHHHHHH-----HHHHHHHHhh
Q 002752 4 SRKLQGEIDRVLKKVQEGVD-----VFDSIWNKVY 33 (885)
Q Consensus 4 ~RKLQ~EIDr~lKKV~EGve-----~Fd~iyeK~~ 33 (885)
.++....+...|.++++.++ .|.++|++-.
T Consensus 59 ~~~~~~~~~~~f~~~a~~L~~~~~~~~~~~w~~~~ 93 (170)
T PF09548_consen 59 SRRSEGPIGEFFERVAERLEKNEGESFAEAWEEAV 93 (170)
T ss_pred HhcccchHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 46778899999999999887 7888888653
No 442
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.38 E-value=2.1e+02 Score=25.11 Aligned_cols=48 Identities=15% Similarity=0.350 Sum_probs=27.1
Q ss_pred HHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002752 132 VSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDN 187 (885)
Q Consensus 132 IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N 187 (885)
|++|+..+..++..++.+. ...++|...+++.+.-|.+|=.|..++.|
T Consensus 2 i~elEn~~~~~~~~i~tvk--------~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 2 IDELENELPRIESSINTVK--------KENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555555555555555541 12345556666666666666666665555
No 443
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=27.38 E-value=5.7e+02 Score=24.68 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=9.4
Q ss_pred chhhhHHHHHHHHHHHHHH
Q 002752 6 KLQGEIDRVLKKVQEGVDV 24 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~ 24 (885)
+++.+++.++.++.+.-..
T Consensus 4 ~f~~~~~~l~~Wl~~~e~~ 22 (213)
T cd00176 4 QFLRDADELEAWLSEKEEL 22 (213)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 4455555555555554333
No 444
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.32 E-value=6.4e+02 Score=33.36 Aligned_cols=36 Identities=33% Similarity=0.395 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhcc-ccchhh-HHHHHHHHHHHHHHHH
Q 002752 55 LQRYRDQIKTWIQS-SEIKDK-KALVDARKLIEREMER 90 (885)
Q Consensus 55 LQR~RDQIKtW~~s-~dIKDK-~~L~e~RK~IE~~MEr 90 (885)
||++-++|.....- ++|+-+ ......++-++++|+.
T Consensus 713 l~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ 750 (1141)
T KOG0018|consen 713 LQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNK 750 (1141)
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555422221 355532 3455566667777764
No 445
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host [].; PDB: 3DOA_A 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A.
Probab=27.18 E-value=26 Score=40.01 Aligned_cols=50 Identities=22% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhhhccccchhhH-HHHHHHHHHHHHHHH
Q 002752 41 KEKFEADLKKEIKKLQR----YRDQIKTWIQSSEIKDKK-ALVDARKLIEREMER 90 (885)
Q Consensus 41 KEKlE~DLKKEIKKLQR----~RDQIKtW~~s~dIKDK~-~L~e~RK~IE~~MEr 90 (885)
+.+++..|++.|+||++ +++++.........+... .|+-++..|+..|..
T Consensus 301 ~~~l~k~l~~~~~klek~l~~l~~~~~~~~~~~~~~~~gelL~a~~~~i~~g~~~ 355 (455)
T PF05833_consen 301 KKRLEKKLEKKIKKLEKKLEKLEEELEESEKAENYREYGELLLANLHQIKKGMKW 355 (455)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCCCE
Confidence 45555555555555554 444444444333444332 666678888777653
No 446
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.14 E-value=1.8e+02 Score=32.44 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCh--hh---------HHHHHHHHHHHHHHHHHHHHHHHh
Q 002752 17 KVQEGVDVFDSIWNKVYDTDNA--NQ---------KEKFEADLKKEIKKLQRYRDQIKT 64 (885)
Q Consensus 17 KV~EGve~Fd~iyeK~~~a~n~--nQ---------KEKlE~DLKKEIKKLQR~RDQIKt 64 (885)
+++.-+++|.++++++.+-+.. .+ -++.+--+||.|.-||++|.|++.
T Consensus 147 ~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L~k~R~~L~~ 205 (293)
T COG4079 147 KLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETLRKHRRRLAE 205 (293)
T ss_pred CHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778889999999999844331 11 223666678888888888888763
No 447
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=27.00 E-value=2.7e+02 Score=33.40 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhhccccch
Q 002752 49 KKEIKKLQRYRDQIKTWIQSSEIK 72 (885)
Q Consensus 49 KKEIKKLQR~RDQIKtW~~s~dIK 72 (885)
..|.++|+.+=++.+.|+..+|.+
T Consensus 550 ~~e~~~l~~~l~~~~~wL~~~d~~ 573 (595)
T TIGR02350 550 AEEKEKIEKAVAELKEALKGEDVE 573 (595)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHH
Confidence 445567777778888899877543
No 448
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=26.97 E-value=2.8e+02 Score=33.62 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHH
Q 002752 50 KEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERF 91 (885)
Q Consensus 50 KEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErF 91 (885)
.|.++|+..=++.+.|+..+ |...+.+.++.++..+..+
T Consensus 553 ~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~ 591 (627)
T PRK00290 553 DEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKL 591 (627)
T ss_pred HHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHH
Confidence 44567777777888999876 4444445555555544443
No 449
>PF15294 Leu_zip: Leucine zipper
Probab=26.97 E-value=4.9e+02 Score=29.41 Aligned_cols=98 Identities=21% Similarity=0.280 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHH
Q 002752 48 LKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDW 127 (885)
Q Consensus 48 LKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~w 127 (885)
|.|||.+||-=-+..|.=+.+-+. .....++-|+.|+.+...-..+--..|.| +.++.....+...|..-..+..=
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~-~at~~l~Ek~kl~~~L~~lq~~~~~~~~k---~~~~~~~q~l~dLE~k~a~lK~e 205 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEK-QATSALDEKSKLEAQLKELQDEQGDQKGK---KDLSFKAQDLSDLENKMAALKSE 205 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccccccccchhhHHHHHHHHHHH
Confidence 899999998433333333332221 12245666777777776655544444443 33444434444445544555555
Q ss_pred HHHHHHHHHHHHHhHHHHhhhh
Q 002752 128 LNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 128 L~~~IdeL~~QiE~~EaEiE~L 149 (885)
|..++..+..+.+.++.++...
T Consensus 206 ~ek~~~d~~~~~k~L~e~L~~~ 227 (278)
T PF15294_consen 206 LEKALQDKESQQKALEETLQSC 227 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777666553
No 450
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=26.90 E-value=1.4e+03 Score=29.76 Aligned_cols=38 Identities=29% Similarity=0.246 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHh---hhc-----cccccccccCCCCCCCch
Q 002752 80 ARKLIEREMERFKICEK---ETK-----TKAFSKEGLGQQPKTDPK 117 (885)
Q Consensus 80 ~RK~IE~~MErFK~vEK---e~K-----tKafSkEGL~~~~k~DP~ 117 (885)
.|+++|.+-=+||+++. .+| .|.+.+-+|....++||.
T Consensus 620 ~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d 665 (988)
T KOG2072|consen 620 KRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDAD 665 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHH
Confidence 45666666555665532 233 566777777666677773
No 451
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=26.82 E-value=4.6e+02 Score=27.96 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 002752 123 ETRDWLNNLVSELESQIDSFEAE 145 (885)
Q Consensus 123 E~~~wL~~~IdeL~~QiE~~EaE 145 (885)
++..=|.++++.|..||..||..
T Consensus 82 ~l~~~i~~~~~~I~~~ik~~Ee~ 104 (215)
T PF07083_consen 82 ELIAPIDEASDKIDEQIKEFEEK 104 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777765
No 452
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.82 E-value=1.3e+03 Score=30.92 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHh
Q 002752 124 TRDWLNNLVSELESQIDSFEAEL 146 (885)
Q Consensus 124 ~~~wL~~~IdeL~~QiE~~EaEi 146 (885)
-..|+...|+++.+++..+..-+
T Consensus 410 r~k~l~~sver~~~~~~~L~~~i 432 (1141)
T KOG0018|consen 410 RIKQLKESVERLDKRRNKLAAKI 432 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444443
No 453
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=26.80 E-value=2.5e+02 Score=32.52 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=39.4
Q ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 002752 60 DQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQI 139 (885)
Q Consensus 60 DQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~Qi 139 (885)
|.|+.....|--+-+..+.+++..||++++.|....+.-+ .+| +|..|+++.
T Consensus 298 Ddl~~~~~~n~~~r~~~~~~a~~ii~~~~~~f~~w~~~~~--------------~~p--------------~I~~lr~~~ 349 (417)
T TIGR01035 298 DDLQPVVEENLAERREEAEKAEEIVEEETAEFKQWLRSLE--------------VEP--------------TIKALRSLA 349 (417)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------chH--------------HHHHHHHHH
Confidence 4444444433333344677888888888888877766542 233 677777776
Q ss_pred Hh-HHHHhhhhc
Q 002752 140 DS-FEAELEGLT 150 (885)
Q Consensus 140 E~-~EaEiE~L~ 150 (885)
+. .+.|++++-
T Consensus 350 ~~i~~~el~~~~ 361 (417)
T TIGR01035 350 EIVREKELEKAL 361 (417)
T ss_pred HHHHHHHHHHHH
Confidence 55 466777764
No 454
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=26.74 E-value=1.3e+02 Score=28.40 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 002752 43 KFEADLKKEIKKLQRYRDQIKTWIQ 67 (885)
Q Consensus 43 KlE~DLKKEIKKLQR~RDQIKtW~~ 67 (885)
.-..+|.++|++||+.++.|+.++.
T Consensus 82 ~~~~~l~~~i~~l~~~~~~l~~~l~ 106 (108)
T cd01107 82 EKLAELEAEIEELQRILRLLEDRLK 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999998764
No 455
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=26.73 E-value=6.1e+02 Score=31.86 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=24.7
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 002752 3 ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVY 33 (885)
Q Consensus 3 a~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~ 33 (885)
+.|.|-.+++..+.++.||-++|..+.+-++
T Consensus 30 ~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~ 60 (683)
T PF08580_consen 30 AVKALSGAAEQILDWIQKAKDVLYGLREGLE 60 (683)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3466778899999999999999988866554
No 456
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.68 E-value=82 Score=28.94 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhCCCCChhhh-hhhhhHHHHHHHhC
Q 002752 173 AHIMKLELILRLLDNDELSPEQV-NDVKDLLEDYVERN 209 (885)
Q Consensus 173 ~Hi~kLE~lLRlL~N~~ldpe~V-~~IKddIeyYVE~n 209 (885)
--+.+||.|++.|++|.|+-|+. ...++-++.+-.++
T Consensus 14 ea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~ 51 (80)
T PRK00977 14 EALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQ 51 (80)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999996554 44666666554444
No 457
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.66 E-value=83 Score=28.73 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhhCCCCChhh-hhhhhhHHHHHHHhC
Q 002752 173 AHIMKLELILRLLDNDELSPEQ-VNDVKDLLEDYVERN 209 (885)
Q Consensus 173 ~Hi~kLE~lLRlL~N~~ldpe~-V~~IKddIeyYVE~n 209 (885)
--+.+||.|++.|++|.|+-++ +...++-++.+-.++
T Consensus 8 eal~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~ 45 (75)
T PRK14066 8 TALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCS 45 (75)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999554 444565555554443
No 458
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=26.66 E-value=7.8e+02 Score=28.52 Aligned_cols=20 Identities=5% Similarity=0.159 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhHHHHhhhh
Q 002752 130 NLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 130 ~~IdeL~~QiE~~EaEiE~L 149 (885)
..++..+.+++.+...++.+
T Consensus 327 ~~L~~~~~~L~~l~~rL~~l 346 (438)
T PRK00286 327 RRLRLAKQRLERLSQRLQQQ 346 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33444444444444444444
No 459
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=26.65 E-value=3.8e+02 Score=31.15 Aligned_cols=13 Identities=0% Similarity=0.186 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 002752 83 LIEREMERFKICE 95 (885)
Q Consensus 83 ~IE~~MErFK~vE 95 (885)
.++..++.|+.++
T Consensus 60 ~L~~iv~~~~~l~ 72 (367)
T PRK00578 60 SLKAKLDTLEELR 72 (367)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 460
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.65 E-value=7.8e+02 Score=30.38 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002752 119 KAKSETRDWLNNLVSELESQIDSFEAE 145 (885)
Q Consensus 119 keK~E~~~wL~~~IdeL~~QiE~~EaE 145 (885)
..-.++-.=|.++..+|+.-.|.+|.+
T Consensus 269 ~~l~ea~~~l~ea~~el~~~~~~le~D 295 (557)
T COG0497 269 ELLEEALYELEEASEELRAYLDELEFD 295 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334445555566666666666666665
No 461
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.60 E-value=2.1e+02 Score=31.13 Aligned_cols=69 Identities=28% Similarity=0.358 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCC-----CchhhHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 002752 117 KEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKT-----RPPRLTHLETSI---TRHKAHIMKLELILRLLD 186 (885)
Q Consensus 117 ~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~-----~~~r~~~le~~i---eRhk~Hi~kLE~lLRlL~ 186 (885)
++++|.+..+|....=+.|.++++...+|-+.+- +..+. .=+|+.+|=.+. ..|---+.||-.||=.|.
T Consensus 134 rekAkKelddwy~~~~ek~~k~~~~nk~eee~~~-~e~~~~~~gTeWErv~kL~D~n~k~sk~gkD~SRlrslL~~LK 210 (216)
T KOG4031|consen 134 REKAKKELDDWYDQQNEKLEKTKANNKAEEEALV-KENEEFSPGTEWERVAKLCDFNPKSSKQGKDVSRLRSLLISLK 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HhhcccCCCchHHHHHHHHcCCccchhccccHHHHHHHHHHhh
Confidence 6889999999999999999999988877766652 22221 114555544433 456666777766655443
No 462
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=26.52 E-value=1.3e+03 Score=28.67 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 002752 161 LTHLETSITRHKAHIMKLELILRLLDN 187 (885)
Q Consensus 161 ~~~le~~ieRhk~Hi~kLE~lLRlL~N 187 (885)
+.+.+..++.-.-+-..|+..|++|..
T Consensus 288 Lq~~qe~Lea~~qqNqqL~~qls~~~~ 314 (617)
T PF15070_consen 288 LQEAQEHLEALSQQNQQLQAQLSLMAL 314 (617)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 444445555555566666666665543
No 463
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=26.51 E-value=7.3e+02 Score=25.62 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhc
Q 002752 128 LNNLVSELESQIDSFEAELEGLT 150 (885)
Q Consensus 128 L~~~IdeL~~QiE~~EaEiE~L~ 150 (885)
+..-|.++++.++.++.++|.++
T Consensus 168 ~~~ei~~~~~~~~~~~~~~~~is 190 (236)
T PF09325_consen 168 AENEIEEAERRVEQAKDEFEEIS 190 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777766664
No 464
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=26.42 E-value=6.6e+02 Score=27.62 Aligned_cols=95 Identities=24% Similarity=0.377 Sum_probs=53.4
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchH
Q 002752 40 QKEK-FEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKE 118 (885)
Q Consensus 40 QKEK-lE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~e 118 (885)
.+.+ ||.|+.+.|.+| +.+..+.|+..-+|...-..+ .. ....
T Consensus 75 ~~~~~YE~e~~~~L~~~---------------------i~d~drrI~~~k~RL~~~~~~---~~------------~~~~ 118 (254)
T PF03194_consen 75 EKYGGYEREFLRYLQRL---------------------IRDCDRRIERAKERLEQTQEE---QA------------KEAD 118 (254)
T ss_pred cccchhHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhCccc---cc------------cchh
Confidence 3444 777777666554 677889999988884322111 00 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 002752 119 KAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLEL 180 (885)
Q Consensus 119 keK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~ 180 (885)
..+ ..-|.+|+.+|..+-.++|.|.. .|+ -+....+-..+++.+.....||.
T Consensus 119 ~~~-------~~~i~~l~~~I~~ll~~aE~LGe-eG~--VdeA~~~~~~~e~Lk~ek~~le~ 170 (254)
T PF03194_consen 119 EEK-------AEKIDELDEKIGELLKEAEELGE-EGD--VDEAQKLMEEVEKLKEEKEELEK 170 (254)
T ss_pred hhH-------HHHHHHHHHHHHHHHHHHHHHHH-CCC--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 34677888888888888887731 222 11222333445666666666666
No 465
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.42 E-value=2.5e+02 Score=33.75 Aligned_cols=171 Identities=20% Similarity=0.223 Sum_probs=0.0
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH----------HHHHHHHhhhccccc
Q 002752 2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQ----------RYRDQIKTWIQSSEI 71 (885)
Q Consensus 2 aa~RKLQ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQ----------R~RDQIKtW~~s~dI 71 (885)
+..+||++ |..| ..|-+|++|+-..+---|.+-- -.|.-|-.|.++.--
T Consensus 144 ~~~~kl~g---------------Fr~~------ed~r~q~q~ld~q~pehfqq~~~~l~dpi~~sd~~~~ld~wg~~~~t 202 (521)
T KOG1937|consen 144 ASRPKLEG---------------FRDI------EDNRNQEQKLDNQTPEHFQQCNAVLNDPIPNSDPRKWLDQWGNSSHT 202 (521)
T ss_pred cccccccc---------------cCcc------hhhHHHHHhhhhccHHHHHHHHHHhcCcccccchhhHHHHHhccCCc
Q ss_pred -hh------------------------hHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHHHHHHHH
Q 002752 72 -KD------------------------KKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRD 126 (885)
Q Consensus 72 -KD------------------------K~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~ 126 (885)
+| +.-+.+++.-.|+- -+++-++|++.-+=+.|..... .-++...-.+
T Consensus 203 ~~df~f~~t~dPa~p~~p~~~~passe~ee~eel~eq~een----eel~ae~kqh~v~~~ales~~s---q~~e~~selE 275 (521)
T KOG1937|consen 203 EKDFNFKLTDDPALPPKPIFAKPASSEEEEVEELTEQNEEN----EELQAEYKQHLVEYKALESKRS---QFEEQNSELE 275 (521)
T ss_pred cccccceecCCCCCCCccccCCCccccchhHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhh
Q 002752 127 WLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKD 200 (885)
Q Consensus 127 wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKd 200 (885)
-+...-+.|-.-.+.-|+-+++|..+=.-++..+++--+.|-+-..--..+++++...++|.+++.+++..|++
T Consensus 276 ~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~Iqe 349 (521)
T KOG1937|consen 276 KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQE 349 (521)
T ss_pred HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHH
No 466
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=26.35 E-value=1e+03 Score=27.15 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002752 159 PRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 207 (885)
Q Consensus 159 ~r~~~le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE 207 (885)
.|.+..+.++.--.-|..+|+.+++. .+....+=+.++.||.
T Consensus 98 ~R~~~~~~Fl~~~~qh~q~L~~~~~n-------~~~~~~~~~~~~~~V~ 139 (289)
T PF05149_consen 98 KRRTAAEEFLQAASQHKQRLRRCEEN-------CDRALSCAESLEEYVQ 139 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 35566677777777777777777773 3455555555555554
No 467
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=26.35 E-value=86 Score=29.31 Aligned_cols=32 Identities=34% Similarity=0.540 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 118 EKAKSETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 118 ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
|+...+|.+||+.-|+.|+.+++.++.++..+
T Consensus 72 E~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~ 103 (120)
T PF02996_consen 72 EMSLEEAIEFLKKRIKELEEQLEKLEKELAEL 103 (120)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999988887655
No 468
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=26.17 E-value=1.3e+03 Score=29.54 Aligned_cols=134 Identities=19% Similarity=0.147 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHH
Q 002752 10 EIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS--SEIKDKKALVDARKLIERE 87 (885)
Q Consensus 10 EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s--~dIKDK~~L~e~RK~IE~~ 87 (885)
|-|.+++|-.|-|....+-.+|+...- .-||-.|--+..-|+|+|-.-.-.|...++ .++.+ |.+.-..|+..
T Consensus 485 e~etl~~K~ge~i~~L~sE~~~lk~il--~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~---le~~~~a~qat 559 (961)
T KOG4673|consen 485 EAETLEEKKGELITKLQSEENKLKSIL--RDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAA---LEAQALAEQAT 559 (961)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHh
Confidence 444455555555555555444443221 125555556666666666555555555544 22222 22222222222
Q ss_pred HH-HHHHHHhhhccccccccccCCC------------CCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcc
Q 002752 88 ME-RFKICEKETKTKAFSKEGLGQQ------------PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV 151 (885)
Q Consensus 88 ME-rFK~vEKe~KtKafSkEGL~~~------------~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~ 151 (885)
.. -++++-|+...|+= .+... .++.-+|.....-.++|..-|.+|.+.++..|.-.|.|..
T Consensus 560 ~d~a~~Dlqk~nrlkQd---ear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q 633 (961)
T KOG4673|consen 560 NDEARSDLQKENRLKQD---EARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQ 633 (961)
T ss_pred hhhhhhhHHHHhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 22334444444411 11000 0111233344445678888899999998888888877753
No 469
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=26.12 E-value=2.3e+02 Score=24.06 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhccc---cCCCCchhhHHHHHHH--HHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhH
Q 002752 127 WLNNLVSELESQIDSFEAELEGLTVK---KGKTRPPRLTHLETSI--TRHKAHIMKLELILRLLDNDELSPEQVNDVKDL 201 (885)
Q Consensus 127 wL~~~IdeL~~QiE~~EaEiE~L~~K---K~K~~~~r~~~le~~i--eRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKdd 201 (885)
+|..+++++...++.++..+..+... .-+.--.++.-.-..+ .+.......||..++..+.... +.+..+-+.
T Consensus 2 ll~~f~~~~~~~~~~l~~~~~~~~~~d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~--~~~~~~~~~ 79 (90)
T PF01627_consen 2 LLDIFLEEAPEDLEQLEQALQALEQEDWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEA--EELEQLLDE 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccch--hHHHHHHHH
Confidence 45666666666666666666333100 0000000111111111 4556667778888776665554 566666666
Q ss_pred HHHHHH
Q 002752 202 LEDYVE 207 (885)
Q Consensus 202 IeyYVE 207 (885)
|+.+|+
T Consensus 80 l~~~l~ 85 (90)
T PF01627_consen 80 LEAMLE 85 (90)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666664
No 470
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.07 E-value=1.6e+02 Score=30.03 Aligned_cols=82 Identities=26% Similarity=0.300 Sum_probs=50.9
Q ss_pred HHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccc------CCCCchhhHHHHHH
Q 002752 94 CEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKK------GKTRPPRLTHLETS 167 (885)
Q Consensus 94 vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK------~K~~~~r~~~le~~ 167 (885)
+||+--+-.=.++.+.. |. |-.|.+ +.=|..-|+.+..-...++.|+..++.-| -.+.+.|+.+|+..
T Consensus 29 LEreLe~~q~~~e~~~~----da-En~k~e-ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 29 LERELEMSQENKECLIL----DA-ENSKAE-IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHhHHHHHH----HH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555543 22 333443 33477778888888888888888885322 12345678888888
Q ss_pred HHHHHHHHHHHHHH
Q 002752 168 ITRHKAHIMKLELI 181 (885)
Q Consensus 168 ieRhk~Hi~kLE~l 181 (885)
..-...||..+|.-
T Consensus 103 ~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 103 NSSLENLLQEKEQE 116 (140)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777777777765
No 471
>PF04943 Pox_F11: Poxvirus F11 protein; InterPro: IPR007027 These proteins belong to the poxvirus F11 family. They are early virus proteins.
Probab=26.05 E-value=1.8e+02 Score=33.75 Aligned_cols=84 Identities=15% Similarity=0.298 Sum_probs=49.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhh-cCCChh----hHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh-----h-
Q 002752 6 KLQGEIDRVLKKVQEGVDVFDSIWNKVY-DTDNAN----QKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD-----K- 74 (885)
Q Consensus 6 KLQ~EIDr~lKKV~EGve~Fd~iyeK~~-~a~n~n----QKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKD-----K- 74 (885)
|+..++|++..+.- =+.+|..+|+.++ +-.+.. -..+.+.=+.+-|+-|+..|+|+- -+++.+++ .
T Consensus 219 k~r~~lEk~y~~~~-~~~El~~~Yd~~~a~~~~~~~is~~~~rs~~i~~~~~~~le~m~k~~~--~~~~~~~~~~l~~~m 295 (366)
T PF04943_consen 219 KLRILLEKCYSRIC-MINELNHIYDSIYANHNNSRPISDIIKRSHDILTHGINNLEAMNKEAS--KAKNTIRPNSLKARM 295 (366)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCccHHHHHhcchHHHHhhhhhccchhhhhh--hccCCCChhHHHHHH
Confidence 45566666666554 5667777777777 333222 255667778999999999997765 33444442 2
Q ss_pred -HHHHHHHHHHHHHHHHHH
Q 002752 75 -KALVDARKLIEREMERFK 92 (885)
Q Consensus 75 -~~L~e~RK~IE~~MErFK 92 (885)
+-+.+.++.|.+.-|.+|
T Consensus 296 ~~Dv~el~~~i~elwde~~ 314 (366)
T PF04943_consen 296 EKDVNELLKSIPELWDEIK 314 (366)
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 234444444444444443
No 472
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=26.01 E-value=1.1e+02 Score=28.48 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCChhh-hhhhhhHHHHHHHhC
Q 002752 170 RHKAHIMKLELILRLLDNDELSPEQ-VNDVKDLLEDYVERN 209 (885)
Q Consensus 170 Rhk~Hi~kLE~lLRlL~N~~ldpe~-V~~IKddIeyYVE~n 209 (885)
...--+..||.|++.|+||.|.-|+ |..+++-++.|-.+.
T Consensus 11 sfE~~l~eLE~IV~~LE~Gel~Le~sl~~~erG~~L~k~c~ 51 (81)
T COG1722 11 SFEEALAELEEIVESLESGELPLEEALKEFERGMALYKECQ 51 (81)
T ss_pred hHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHH
Confidence 3444567889999999999998554 445777777776543
No 473
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.82 E-value=8.8e+02 Score=26.30 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHH
Q 002752 167 SITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVE 207 (885)
Q Consensus 167 ~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE 207 (885)
...|..||...|+.++.+= .|..-+--+|-|-|=-|+.
T Consensus 149 ~~~R~~F~~~~ldYv~~ln---~iq~kKk~e~Le~ll~~m~ 186 (215)
T cd07601 149 YACRKKQHQTAMNYYCALN---LLQYKKTTALLEPMIGYLQ 186 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4589999999999998641 1222222334555545554
No 474
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.80 E-value=1.6e+03 Score=29.25 Aligned_cols=83 Identities=13% Similarity=0.008 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCh--hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh-------------hHHHHHHHH
Q 002752 18 VQEGVDVFDSIWNKVYDTDNA--NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKD-------------KKALVDARK 82 (885)
Q Consensus 18 V~EGve~Fd~iyeK~~~a~n~--nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKD-------------K~~L~e~RK 82 (885)
+.+....++.....+....+. .+-..++.++..--..+...+..+..|+.....-| ...|.+.++
T Consensus 706 l~qae~~le~aq~~~q~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1042)
T TIGR00618 706 LRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAA 785 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHhcCCHHHHHHHHH
Confidence 444455555555555444411 23455566666666667777777888887663322 224555556
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 002752 83 LIEREMERFKICEKETKT 100 (885)
Q Consensus 83 ~IE~~MErFK~vEKe~Kt 100 (885)
.|+...+.++.+....+.
T Consensus 786 ~i~~~~~~~~~~~~~~~~ 803 (1042)
T TIGR00618 786 EIQFFNRLREEDTHLLKT 803 (1042)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666655555443
No 475
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=25.73 E-value=1.2e+02 Score=29.60 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHH
Q 002752 122 SETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSIT 169 (885)
Q Consensus 122 ~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ie 169 (885)
.....-|.+++.+|..+++....+++.-..||++++ .|+++|+..|.
T Consensus 71 l~i~t~L~~v~~~l~~~~~~~~rQl~aE~~k~~~~~-~r~~~l~~~i~ 117 (118)
T PF08514_consen 71 LKIMTSLCDVAKSLSEELEKTQRQLEAEKKKKRKNK-SRLEELEQKIK 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHhc
Confidence 445566667777777777777777765544443333 48888887663
No 476
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.68 E-value=7.5e+02 Score=31.39 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVY 33 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~iyeK~~ 33 (885)
|+|.-+.+.+.-..++.+.++++
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHH
Confidence 34444555555556666666654
No 477
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.65 E-value=1.8e+03 Score=29.92 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=17.7
Q ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHH
Q 002752 57 RYRDQIKTWIQSSEIKDKKALVDARKLIER 86 (885)
Q Consensus 57 R~RDQIKtW~~s~dIKDK~~L~e~RK~IE~ 86 (885)
.++.++..-..+.-.+++..|.+.|..++.
T Consensus 315 ~l~~~~~~l~~~~a~~~~~eL~el~~ql~~ 344 (1353)
T TIGR02680 315 ALRTRLEALQGSPAYQDAEELERARADAEA 344 (1353)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666777766665544
No 478
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=25.60 E-value=1.4e+03 Score=28.44 Aligned_cols=56 Identities=11% Similarity=0.275 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (885)
Q Consensus 9 ~EIDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (885)
.+||+=|+++.+++..|+.. .+..|.=|--+.=...++.++-|+-+=|+|=..+..
T Consensus 167 ~~lEk~Le~i~~~l~qf~~l----t~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e 222 (570)
T COG4477 167 PELEKKLENIEEELSQFVEL----TSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAE 222 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHh----ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999874 455555554445556889999999999999877654
No 479
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.58 E-value=3.8e+02 Score=31.18 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002752 77 LVDARKLIEREMERFKI 93 (885)
Q Consensus 77 L~e~RK~IE~~MErFK~ 93 (885)
...-|+..|++|||.-+
T Consensus 216 ~eklR~r~eeeme~~~a 232 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQA 232 (365)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44567778888888543
No 480
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=25.58 E-value=5.8e+02 Score=30.87 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=20.7
Q ss_pred HHHhh-hCCCCChhhhhhhhhHHHHHHHh
Q 002752 181 ILRLL-DNDELSPEQVNDVKDLLEDYVER 208 (885)
Q Consensus 181 lLRlL-~N~~ldpe~V~~IKddIeyYVE~ 208 (885)
+++.+ +++.|+.+.-+.|++.|..|++.
T Consensus 470 ~~~~i~~~~~l~~~~~~~L~~~i~~~~~~ 498 (501)
T TIGR00962 470 ILEEINTKKKLTEELEDKLKEALKNFKKT 498 (501)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 33444 35679988788899999999874
No 481
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=25.57 E-value=2.4e+02 Score=34.86 Aligned_cols=40 Identities=10% Similarity=0.267 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHH
Q 002752 50 KEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMER 90 (885)
Q Consensus 50 KEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MEr 90 (885)
.+.++++.+-+.++.|+.+++. |+..+.+.++.++..+..
T Consensus 579 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~~~~~~ 618 (657)
T PTZ00186 579 AEKENVKTLVAELRKAMENPNV-AKDDLAAATDKLQKAVME 618 (657)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc-CHHHHHHHHHHHHHHHHH
Confidence 3445677777888889986442 555555555555555444
No 482
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=25.43 E-value=3.9e+02 Score=33.51 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHH---HHHHHHhhhcc--ccchhhHHHHHHHHHHH
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQR---YRDQIKTWIQS--SEIKDKKALVDARKLIE 85 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR---~RDQIKtW~~s--~dIKDK~~L~e~RK~IE 85 (885)
+++++.-+.+-++.++= +.|+....+++|.|-|| +|+|||.-..- .+-.++..+.++|++|+
T Consensus 191 L~~l~~lL~~ele~l~l-------------~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~ 257 (775)
T TIGR00763 191 LKKALELLKKELELLKL-------------QNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEKDDKDELEKLKEKLE 257 (775)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHH
Q ss_pred H-------HHHHHHHHHhhhcccccccc
Q 002752 86 R-------EMERFKICEKETKTKAFSKE 106 (885)
Q Consensus 86 ~-------~MErFK~vEKe~KtKafSkE 106 (885)
. +=.-.|++.|-.++-.-|-|
T Consensus 258 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 285 (775)
T TIGR00763 258 ELKLPEEVKKVIEKELTKLSLLEPSSSE 285 (775)
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCCCch
No 483
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.27 E-value=2.4e+02 Score=35.48 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVY 33 (885)
Q Consensus 11 IDr~lKKV~EGve~Fd~iyeK~~ 33 (885)
|++.-+.+.+.-..|+.+.++++
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444455555555555554
No 484
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=25.18 E-value=72 Score=35.09 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHH
Q 002752 164 LETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLED 204 (885)
Q Consensus 164 le~~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIey 204 (885)
....+.+++.|+..||.|++..++=-+.++.+..|++-+..
T Consensus 221 a~~~L~~~~~~l~~Le~l~~~~~~ipv~~~~~~~L~~~l~k 261 (335)
T PF08429_consen 221 AKELLSRPRVSLEQLEALLEEAENIPVSLPSLDKLKDALQK 261 (335)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 34445578899999999999998888888777776665543
No 485
>PF04220 YihI: Der GTPase activator (YihI); InterPro: IPR007336 This entry contains Escherichia coli (strain K12) YihI. YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor and can therefore be considered a GAP (GTPase activating)-like protein. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI []. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit []. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI [].
Probab=25.16 E-value=1.1e+02 Score=32.15 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhCCC-CChhh---hhhhhhHHHHHHHhC
Q 002752 176 MKLELILRLLDNDE-LSPEQ---VNDVKDLLEDYVERN 209 (885)
Q Consensus 176 ~kLE~lLRlL~N~~-ldpe~---V~~IKddIeyYVE~n 209 (885)
.+|..||..|++|+ |+.++ |+.--+.|+..++.-
T Consensus 108 ~rL~~LLdrle~Ge~Ls~~dQ~yvD~~LdRi~~Lm~~L 145 (169)
T PF04220_consen 108 ERLNQLLDRLEEGETLSAEDQKYVDEKLDRIEELMEEL 145 (169)
T ss_pred HHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999998 56443 445556666666543
No 486
>PF15456 Uds1: Up-regulated During Septation
Probab=25.13 E-value=7e+02 Score=24.90 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002752 46 ADLKKEIKKLQRYRDQIK 63 (885)
Q Consensus 46 ~DLKKEIKKLQR~RDQIK 63 (885)
.+||||++.|.--=+.++
T Consensus 25 e~LKkEl~~L~~R~~~lr 42 (124)
T PF15456_consen 25 EELKKELRSLDSRLEYLR 42 (124)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 479999999975444443
No 487
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=25.12 E-value=6.3e+02 Score=24.39 Aligned_cols=63 Identities=11% Similarity=0.258 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChh-hHHHHHHHHHHHHHH-HHHHHHHHHhhhccccchhh
Q 002752 12 DRVLKKVQEGVDVFDSIWNKVYDTDNAN-QKEKFEADLKKEIKK-LQRYRDQIKTWIQSSEIKDK 74 (885)
Q Consensus 12 Dr~lKKV~EGve~Fd~iyeK~~~a~n~n-QKEKlE~DLKKEIKK-LQR~RDQIKtW~~s~dIKDK 74 (885)
.+.+..+++-++..+.-|+.+......+ .-.++-.+|++...+ ++.--+++-.++..+|+.+-
T Consensus 81 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~al~~~d~~~~ 145 (171)
T PF02203_consen 81 AELLARAEQNLEQAEQAFDAFKALPHASPEERALADELEASFDAYLQQALDPLLAALRAGDIAAF 145 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS---GTGGHHHHHHHHHHHHH-HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCHHHH
Confidence 5778888888888888888888887766 566688899999888 76776888888888877754
No 488
>PRK14011 prefoldin subunit alpha; Provisional
Probab=25.03 E-value=7.5e+02 Score=25.24 Aligned_cols=91 Identities=22% Similarity=0.219 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCC-------CCC-CCc--
Q 002752 47 DLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQ-------QPK-TDP-- 116 (885)
Q Consensus 47 DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~-------~~k-~DP-- 116 (885)
+|...+-.|+.|+.||.....+ =..|....-+|..|-...+.-.-+++=|.- ..+ .|+
T Consensus 4 elq~~~~~l~~~~~qie~L~~s------------i~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dk 71 (144)
T PRK14011 4 ELQNQFMALEVYNQQVQKLQEE------------LSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDK 71 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCe
Confidence 4556677778888887654433 333444445555544444322224444320 011 222
Q ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 117 ----------KEKAKSETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 117 ----------~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
-|+...++.+|++.-|+.|++..+.+..-++.+
T Consensus 72 VlVdIGtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~ 114 (144)
T PRK14011 72 AILGVGSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEEL 114 (144)
T ss_pred EEEEccCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999998888888877665
No 489
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=24.93 E-value=4.5e+02 Score=22.65 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 002752 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKIC 94 (885)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK~v 94 (885)
.+.++.+...-+.+=+.+=++++.+..+.|+++.. +.|..=+++||.+
T Consensus 22 ~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~~~~------~~~k~l~~~Wk~i 69 (77)
T PF03993_consen 22 FEEQDAEREENLEKKEALIEEAEALAESEDWKEAA------EEIKELQQEWKEI 69 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH------HHHHHHHHHHHHc
Confidence 34455555556666778888999999988844332 3333444555543
No 490
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=24.87 E-value=1.5e+02 Score=27.55 Aligned_cols=24 Identities=46% Similarity=0.549 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhH
Q 002752 42 EKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK 75 (885)
Q Consensus 42 EKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~ 75 (885)
+..+..+|+=|++|..| |||||-.
T Consensus 32 ~~~~~~v~~hI~lLheY----------NeiKD~g 55 (83)
T PF07061_consen 32 EDPEKIVKRHIKLLHEY----------NEIKDIG 55 (83)
T ss_pred cCHHHHHHHHHHHHHHH----------hHHHHHH
Confidence 46678899999999987 7899976
No 491
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=24.85 E-value=2.3e+02 Score=26.03 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=35.1
Q ss_pred HHHHHHHHhHHHHhhhhccccCCCCchhhHHHHH----HHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHh
Q 002752 133 SELESQIDSFEAELEGLTVKKGKTRPPRLTHLET----SITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVER 208 (885)
Q Consensus 133 deL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~----~ieRhk~Hi~kLE~lLRlL~N~~ldpe~V~~IKddIeyYVE~ 208 (885)
|+|..+++.+-.+++.|............+++.. .++.-+.++..+-.-+ -+++.++-+.++.||..
T Consensus 1 e~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~~~~~V~e 71 (94)
T PF05957_consen 1 EDLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA---------REQAREAAEQTEDYVRE 71 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 3567777777777777742111111122223333 2232233333222222 36778888889999975
Q ss_pred C
Q 002752 209 N 209 (885)
Q Consensus 209 n 209 (885)
|
T Consensus 72 ~ 72 (94)
T PF05957_consen 72 N 72 (94)
T ss_pred C
Confidence 5
No 492
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=24.83 E-value=4.2e+02 Score=32.76 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002752 122 SETRDWLNNLVSELESQIDSFEAELEGL 149 (885)
Q Consensus 122 ~E~~~wL~~~IdeL~~QiE~~EaEiE~L 149 (885)
.+..+.+...|..|.+|+|.+..++.+.
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~ 440 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQ 440 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777766666554
No 493
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=24.75 E-value=9.4e+02 Score=26.26 Aligned_cols=123 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 002752 13 RVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFK 92 (885)
Q Consensus 13 r~lKKV~EGve~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~MErFK 92 (885)
++.+||.+....|+..-..-.-. -|+.-|..+||..++.|..+.+===.=|.|-++.=-..-.-+..+||+|
T Consensus 95 ~a~~kia~~~~~~d~~i~~~fl~-------pL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~k~~eeelr~a~ekF- 166 (223)
T cd07614 95 ESMKRLAEVKDSLDIEVKQNFID-------PLQNLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAMEKF- 166 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-
Q ss_pred HHHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccCCCCchhhHHHHHHHHHHH
Q 002752 93 ICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHK 172 (885)
Q Consensus 93 ~vEKe~KtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KK~K~~~~r~~~le~~ieRhk 172 (885)
+..++.+..=|.++++.=-.|+..|-.= ++..++-|+
T Consensus 167 -------------------------ees~E~a~~~M~~il~~e~e~~~~L~~l------------------veAQl~Yh~ 203 (223)
T cd07614 167 -------------------------EESKEVAETSMHNLLETDIEQVSQLSAL------------------VDAQLDYHR 203 (223)
T ss_pred -------------------------HHHHHHHHHHHHHHHhCChHHHHHHHHH------------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHhhh
Q 002752 173 AHIMKLELILRLLD 186 (885)
Q Consensus 173 ~Hi~kLE~lLRlL~ 186 (885)
--..-|+.|.+-|.
T Consensus 204 qa~eiL~~l~~~l~ 217 (223)
T cd07614 204 QAVQILDELAEKLK 217 (223)
T ss_pred HHHHHHHHHHHHHH
No 494
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=24.72 E-value=1.3e+02 Score=29.26 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 002752 45 EADLKKEIKKLQRYRDQIKTWI 66 (885)
Q Consensus 45 E~DLKKEIKKLQR~RDQIKtW~ 66 (885)
..+|.++|..||++++.|..++
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 88 LAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888887766543
No 495
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=24.58 E-value=3.7e+02 Score=33.09 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Q 002752 49 KKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREM 88 (885)
Q Consensus 49 KKEIKKLQR~RDQIKtW~~s~dIKDK~~L~e~RK~IE~~M 88 (885)
..|.++|+..=+.++.|+..++ ...+.+.++.++..+
T Consensus 593 ~~ere~i~~~l~~~~~WL~~~d---~~~i~~k~~eL~~~l 629 (663)
T PTZ00400 593 DADKDELKQKITKLRSTLSSED---VDSIKDKTKQLQEAS 629 (663)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHH
Confidence 4455667777777888998763 333444444444433
No 496
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=24.52 E-value=1.1e+03 Score=28.04 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHh
Q 002752 83 LIEREMERFKICEK 96 (885)
Q Consensus 83 ~IE~~MErFK~vEK 96 (885)
+|+.+.++|++++.
T Consensus 337 ~l~~q~~~f~~W~~ 350 (429)
T PF10037_consen 337 LLPEQCERFQEWEE 350 (429)
T ss_pred hHHHHHHHHHHHHH
Confidence 67777777776654
No 497
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=24.46 E-value=9.2e+02 Score=26.07 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=28.2
Q ss_pred HHHHhHHHHhhhh-ccccCCCCchhhHHHHH--HHHHHHHHHHHHHHHHHh
Q 002752 137 SQIDSFEAELEGL-TVKKGKTRPPRLTHLET--SITRHKAHIMKLELILRL 184 (885)
Q Consensus 137 ~QiE~~EaEiE~L-~~KK~K~~~~r~~~le~--~ieRhk~Hi~kLE~lLRl 184 (885)
+..|.+++-+++- +..|+| ++.-+++.+. ...|+.||...|+.++.+
T Consensus 118 K~se~~~~al~k~~~lsk~k-k~~~~~ea~~~l~~~r~~f~~~~l~Yv~~l 167 (207)
T cd07602 118 KETEKFCSSLEKHLNLSTKK-KENQLQEADAQLDMERRNFHQASLEYVFKL 167 (207)
T ss_pred HHHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555553 233443 3344445554 448999999999999864
No 498
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=24.44 E-value=3.3e+02 Score=33.24 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHHH
Q 002752 7 LQGEIDRVLKKVQ 19 (885)
Q Consensus 7 LQ~EIDr~lKKV~ 19 (885)
-+.||++.+++..
T Consensus 483 s~~ei~~~~~~~~ 495 (595)
T PRK01433 483 DKTEIDIMLENAY 495 (595)
T ss_pred CHHHHHHHHHHHH
Confidence 4567888877664
No 499
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.33 E-value=92 Score=31.23 Aligned_cols=26 Identities=35% Similarity=0.875 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002752 41 KEKFEADLKKEIKKLQRYRDQIKTWIQS 68 (885)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s 68 (885)
||++|.| ++|.+|.+.++.|..|+..
T Consensus 56 ~e~~e~D--~~L~~L~~~k~~id~~~~~ 81 (130)
T PF05263_consen 56 KERLESD--EELQSLKRQKEAIDRWLET 81 (130)
T ss_pred HHHHHhh--HHHHHHHHHHHHHHHHHHh
Confidence 6667776 7899999999999999987
No 500
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=24.31 E-value=2.3e+02 Score=27.84 Aligned_cols=117 Identities=20% Similarity=0.308 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhH------HHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCC
Q 002752 39 NQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKK------ALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQP 112 (885)
Q Consensus 39 nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~dIKDK~------~L~e~RK~IE~~MErFK~vEKe~KtKafSkEGL~~~~ 112 (885)
+..+++++ +=.++-.+|.+++.+-.++..|.-=-.. .|.+.|..|...++.++.++.+-..|-=--..+ ..
T Consensus 14 ~d~~~l~~-~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l--~~ 90 (150)
T PF07200_consen 14 SDEEKLDA-FVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL--SS 90 (150)
T ss_dssp HH-HHHHH-HGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred cCHHHHHH-HHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hc
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHhhhhccccCCCCchhhHHHHHHH-HHHHHHHHH
Q 002752 113 KTDPKEKAKSETRDWLNNLVSELESQIDSF-------EAELEGLTVKKGKTRPPRLTHLETSI-TRHKAHIMK 177 (885)
Q Consensus 113 k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~-------EaEiE~L~~KK~K~~~~r~~~le~~i-eRhk~Hi~k 177 (885)
+.+| .-...+|...+.+...+-|.+ +.+++.. |+.++ .|-.+|..+
T Consensus 91 ~~s~-----~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~F--------------l~~f~~~R~~yH~R~ 144 (150)
T PF07200_consen 91 NYSP-----DALLARLQAAASEAEEESEELAEEFLDGEIDVDDF--------------LKQFKEKRKLYHLRR 144 (150)
T ss_dssp CHHH-----HHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred cCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH--------------HHHHHHHHHHHHHHH
Done!