Query 002752
Match_columns 885
No_of_seqs 269 out of 454
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 17:23:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002752.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1469-1472//hhsearch_pdb/002752hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 30.6 5.2 22 76-97 333-358 (1184)
2 1i84_S Smooth muscle myosin he 1.0 1 1 28.1 10.0 14 203-216 502-516 (1184)
3 2oez_A UPF0289 protein VP2528; 1.0 1 1 26.4 8.1 122 46-189 58-180 (247)
4 3ghg_A Fibrinogen alpha chain; 1.0 1 1 26.1 11.0 101 41-183 55-155 (562)
5 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 23.5 10.0 10 59-68 96-105 (1080)
6 1wmi_B RELB, hypothetical prot 1.0 1 1 20.6 1.6 42 160-201 5-47 (67)
7 3f31_A Spectrin alpha chain, b 1.0 1 1 20.4 0.9 118 17-146 16-140 (149)
8 2js5_A Uncharacterized protein 1.0 1 1 19.9 3.0 22 46-67 6-27 (71)
9 2wr1_A Hemagglutinin; glycopro 1.0 1 1 19.9 -1.2 34 843-883 473-506 (509)
10 1u2m_A Histone-like protein HL 1.0 1 1 19.7 2.8 94 2-104 23-116 (143)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=30.59 Aligned_cols=22 Identities=9% Similarity=0.280 Sum_probs=10.1
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHH
Q ss_conf 989999999----9999998998852
Q 002752 76 ALVDARKLI----EREMERFKICEKE 97 (885)
Q Consensus 76 ~L~e~RK~I----E~~MErFK~vEKE 97 (885)
.+.++.+.| ++++..|+++-=.
T Consensus 333 ~~~~a~~~lg~~~~e~~~i~~ilaai 358 (1184)
T 1i84_S 333 ETLEAMTIMGFTEEEQTSILRVVSSV 358 (1184)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCEECHHHHHHHHHHHHHH
T ss_conf 99999882125899999999999999
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=28.11 Aligned_cols=14 Identities=29% Similarity=0.733 Sum_probs=5.7
Q ss_pred HHHHHHCCC-CCCCC
Q ss_conf 999982899-85555
Q 002752 203 EDYVERNQD-DFEEF 216 (885)
Q Consensus 203 eyYvE~Nqd-Df~ef 216 (885)
+.|...+=+ .|.+|
T Consensus 502 ~ey~~Egi~~~~i~~ 516 (1184)
T 1i84_S 502 EEYQREGIEWNFIDF 516 (1184)
T ss_dssp HHHHHHTCSCCCCCC
T ss_pred HHHHHCCCCCCCCCC
T ss_conf 999964997501365
No 3
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=1.00 E-value=1 Score=26.42 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=81.2
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 999999-9999997998976313632100489899999999999998998852046433212358899999058877999
Q 002752 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSET 124 (885)
Q Consensus 46 ~DLKKE-IKKLQR~RDQIKtW~~s~eIKDK~~L~e~RK~IE~~MErFK~vEKEsKtKafSkEGL~~~~k~DP~ekeK~E~ 124 (885)
+|||-| ||-|.|.|-.++.|..+.+| |...|......|+..... |...++..-. ...
T Consensus 58 ~dlK~eLlKeLERq~~~L~~~~~~P~V-d~~~l~~~l~~l~~~~~~-----------------L~~~~r~Gq~----Lre 115 (247)
T 2oez_A 58 IQLKSELAKDLEKQRLSYRHWLNVEGV-DQEALNSLLNEIDVVHSQ-----------------LMGAERFGQA----LKE 115 (247)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTTCTTS-CHHHHHHHHHHHHHHHHH-----------------HHHCCSTTHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHH-----------------HHHCCCCCCH----HHH
T ss_conf 989999999999999999988469986-799999999999999999-----------------9736755303----357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999997876787763200013899960167889999987999999999998552899
Q 002752 125 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 189 (885)
Q Consensus 125 ~~wL~~~IdeL~~QiE~~EaEiE~L~~KKgK~~~~r~~~le~~ieRhk~Hi~kLE~iLRlL~N~~ 189 (885)
-+||...=.-+.--=-.++-|+=.+..=-.+....|..+++.+++-..--..-+.++||+|-+..
T Consensus 116 de~L~~iRQR~~iPGG~C~FDLP~yh~Wl~~p~~~R~~dl~~W~~~l~pl~~al~liL~LlR~s~ 180 (247)
T 2oez_A 116 DRFLSSIRQRFNLPGGSCCFDLPALHYWLHLPIERKKHDANQWQKSLKPLSDALTLWLKLARETG 180 (247)
T ss_dssp CHHHHHHHHHHHC----CGGGCHHHHHHHTSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 08999988461599815786867889987799999999999999988999999999999998359
No 4
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=1.00 E-value=1 Score=26.15 Aligned_cols=101 Identities=13% Similarity=0.177 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 88899999999999999799897631363210048989999999999999899885204643321235889999905887
Q 002752 41 KEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA 120 (885)
Q Consensus 41 KEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~L~e~RK~IE~~MErFK~vEKEsKtKafSkEGL~~~~k~DP~eke 120 (885)
=+|.|-||++-|.||...-|+| ..+|+-|+.-|+.- +-+ |. .+.+.
T Consensus 55 LdkqErDltkrINELKnqLEdl---------------sKnsKdseqy~k~~---------~E~----Lr------~rq~q 100 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEY---------------QKNNKDSHSLTTNI---------MEI----LR------GDFSS 100 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH---------------HHHHHHHHHHHHHH---------HHT----TS------SHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH---------------HHHCHHHHHHHHHH---------HHH----HH------HHHHH
T ss_conf 8764271899999999999998---------------76010199999999---------999----99------99876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999999999999997876787763200013899960167889999987999999999998
Q 002752 121 KSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILR 183 (885)
Q Consensus 121 K~E~~~wL~~~IdeL~~QiE~~EaEiE~L~~KKgK~~~~r~~~le~~ieRhk~Hi~kLE~iLR 183 (885)
..+...=++.+-++|+++|+.++.+|+..- .+|..|+..|+..+--|.|||.-+.
T Consensus 101 ~~dNdNtynE~S~ELRRrIqyLKekVdnQl--------snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 101 ANNRDNTYNRVSEDLRSRIEVLKRKVIEKV--------QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 311102689987999999999999999999--------9999999999999999999999999
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=23.48 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=4.6
Q ss_pred HHHHHHHHCC
Q ss_conf 9989763136
Q 002752 59 RDQIKTWIQS 68 (885)
Q Consensus 59 RDQIKtW~~s 68 (885)
+++|=||++.
T Consensus 96 ~~~iYTy~G~ 105 (1080)
T 2dfs_A 96 SKLIYTYCGI 105 (1080)
T ss_dssp TCCCEEEETT
T ss_pred CCCCHHCCCC
T ss_conf 5773102574
No 6
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=1.00 E-value=1 Score=20.64 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHH
Q ss_conf 167889999987999999999998552899-993556545668
Q 002752 160 RLTHLETSITRHKAHIMKLELILRLLDNDE-LSPEQVNDVKDL 201 (885)
Q Consensus 160 r~~~le~~ieRhk~Hi~kLE~iLRlL~N~~-ldpe~V~~Iked 201 (885)
|+.+.-.-++|.|-||.+||-+|--+.-|+ |.-+.+.+|...
T Consensus 5 kv~~vl~ELeRlkveiQRLE~ml~p~~~~e~v~eeEl~ei~~e 47 (67)
T 1wmi_B 5 KVGDVLKELERLKVEIQRLEAMLMPEERDEDITEEEIAELLEL 47 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTSCBCCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 8999999999999999999998265467787899999999999
No 7
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=1.00 E-value=1 Score=20.44 Aligned_cols=118 Identities=14% Similarity=0.244 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHHH
Q ss_conf 79987997899989762189704688899999999999999799897631363-------21004898999999999999
Q 002752 17 KVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSS-------EIKDKKALVDARKLIEREME 89 (885)
Q Consensus 17 KV~EGie~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~-------eIKDK~~L~e~RK~IE~~ME 89 (885)
.|.+-++.....|.++... ...-+.|||.-++ +.++++-=+.+..|+... +.+|- ..|+..+.
T Consensus 16 ~I~~r~~~l~~r~~~L~~~-a~~R~~~Le~s~~--l~~F~~d~~el~~Wi~ek~~~~~~~~~~d~-------~~v~~~l~ 85 (149)
T 3f31_A 16 DIQERRQQVLDRYHRFKEL-STLRRQKLEDSYR--FQFFQRDAEELEKWIQEKLQIASDENYKDP-------TNLQGKLQ 85 (149)
T ss_dssp HHHHHHHHHHHHTCSCHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTSCSSCSS-------SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCH-------HHHHHHHH
T ss_conf 9999999999999999999-9999999999899--999999899999999998998708664788-------99999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989988520464332123588999990588779999999999999999787678776
Q 002752 90 RFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAEL 146 (885)
Q Consensus 90 rFK~vEKEsKtKafSkEGL~~~~k~DP~ekeK~E~~~wL~~~IdeL~~QiE~~EaEi 146 (885)
++++.|.|.....-+-+.+.... .-.-.......++|...+++|+.+-+.+....
T Consensus 86 kH~afe~El~a~~~~l~~v~~~g--~~Li~~~~~~~~~I~~rl~~l~~~W~~L~~~~ 140 (149)
T 3f31_A 86 KHQAFEAEVQANSGAIVKLDETG--NLMISEGHFASETIRTRLMELHRQWELLLEKM 140 (149)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHH--HHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998787899999999--99986699867999999999999999999999
No 8
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=1.00 E-value=1 Score=19.92 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999997998976313
Q 002752 46 ADLKKEIKKLQRYRDQIKTWIQ 67 (885)
Q Consensus 46 ~DLKKEIKKLQR~RDQIKtW~~ 67 (885)
.+||||||||+|.--|.|.=+.
T Consensus 6 ~eLkkevkKL~~~A~q~kmdLH 27 (71)
T 2js5_A 6 EELKAKLKKLNAQATALKMDLH 27 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998389
No 9
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A* 2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A* 3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Probab=1.00 E-value=1 Score=19.87 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=21.8
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCHHHHC
Q ss_conf 40579999767667531134522000356278420023220
Q 002752 843 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDEL 883 (885)
Q Consensus 843 yErGsY~yFDp~~~~~~~~~~W~qk~K~eFtleY~~LE~rl 883 (885)
.-.|.|.+|--. ++=|...-++=|.+|...+++-
T Consensus 473 ~GnGCFe~~Hkc-------d~~cmesirNgTYd~~~y~eEs 506 (509)
T 2wr1_A 473 LGNGCFEFYHKC-------DDECMNSVKNGTYDYPKYEEES 506 (509)
T ss_dssp CSSSEEEESSCC-------CHHHHHHHHTTCCCHHHHHTTT
T ss_pred HCCCCEEEEECC-------CHHHHHHHHCCCCCCHHHHHHH
T ss_conf 478705453111-------6778888766887870555665
No 10
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=1.00 E-value=1 Score=19.70 Aligned_cols=94 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 74442034688987779987997899989762189704688899999999999999799897631363210048989999
Q 002752 2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDAR 81 (885)
Q Consensus 2 aa~RKLQ~EIDr~lKKV~EGie~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~L~e~R 81 (885)
.+..+|+.+..+.-+.+..--..|+..++++..+-+..++++.|.+|.+-...+|+++.....=+.. .-.+.+
T Consensus 23 ~a~~~l~~~~~~~~~el~~~~~el~~~~~~lq~~ls~~~~~~~~~el~~~~~~~q~~~~~~~~~l~~-------~~~~~~ 95 (143)
T 1u2m_A 23 GVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRAR-------RSNEER 95 (143)
T ss_dssp TTTTTTC---------------------------------------------------------CHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_conf 9999999998889999999999999999999877799999999999999999999999999999999-------999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999989988520464332
Q 002752 82 KLIEREMERFKICEKETKTKAFS 104 (885)
Q Consensus 82 K~IE~~MErFK~vEKEsKtKafS 104 (885)
..|..++ .++++.-.|.+.|+
T Consensus 96 ~~i~~~i--~~ai~~vak~~gy~ 116 (143)
T 1u2m_A 96 GKLVTRI--QTAVKSVANSQDID 116 (143)
T ss_dssp HHHHHHH--HHHHHHHHHHTTCS
T ss_pred HHHHHHH--HHHHHHHHHHCCCE
T ss_conf 9999999--99999999987984
Done!