Query 002752
Match_columns 885
No_of_seqs 269 out of 454
Neff 3.7
Searched_HMMs 13730
Date Tue Mar 26 17:31:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002752.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1469-1472//hhsearch_scop/002752hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efla1 a.238.1.4 (A:1-288) Fo 59.4 3.9 0.00028 16.4 13.3 32 1-32 1-32 (288)
2 d1bgca_ a.26.1.1 (A:) Granuloc 41.7 7 0.00051 14.5 7.4 54 11-66 64-118 (165)
3 d2oeza1 e.68.1.1 (A:1-245) Unc 29.6 11 0.00078 13.1 8.0 122 46-189 56-178 (245)
4 d1ez3a_ a.47.2.1 (A:) Syntaxin 17.8 17 0.0013 11.5 10.8 92 9-100 13-118 (124)
5 d1owaa_ a.7.1.1 (A:) Spectrin 15.8 19 0.0014 11.2 1.4 47 18-67 24-70 (156)
6 d1alua_ a.26.1.1 (A:) Interleu 8.3 36 0.0027 9.1 8.8 19 12-30 63-81 (166)
7 d1u2ma_ f.48.1.1 (A:) Periplas 7.2 44 0.0032 8.5 2.8 20 195-214 99-118 (143)
8 d1i1rb_ a.26.1.1 (B:) Interleu 6.3 52 0.0038 7.9 7.0 19 12-30 63-81 (167)
9 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 6.0 56 0.0041 7.7 11.3 94 9-102 12-111 (196)
10 d2b5dx1 a.8.3.3 (X:415-528) Al 5.8 58 0.0042 7.5 5.3 37 165-201 61-97 (114)
No 1
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.38 E-value=3.9 Score=16.43 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=20.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97444203468898777998799789998976
Q 002752 1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKV 32 (885)
Q Consensus 1 Maa~RKLQ~EIDr~lKKV~EGie~Fd~iyeK~ 32 (885)
|+=...|..-+|.+++++..|+..++++-.=+
T Consensus 1 ms~~~~l~d~~~~l~~~~~~~~~~~~~~~~~~ 32 (288)
T d2efla1 1 MSWGTELWDQFDNLEKHTQWGIDILEKYIKFV 32 (288)
T ss_dssp CCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97033467789999999998999999999999
No 2
>d1bgca_ a.26.1.1 (A:) Granulocyte-colony stimulating factor (G-CSF) {Cow (Bos taurus) [TaxId: 9913]}
Probab=41.72 E-value=7 Score=14.48 Aligned_cols=54 Identities=7% Similarity=0.195 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 889877799879978999897621897046888999999999999-99799897631
Q 002752 11 IDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKL-QRYRDQIKTWI 66 (885)
Q Consensus 11 IDr~lKKV~EGie~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKL-QR~RDQIKtW~ 66 (885)
-|.||+|+..|+..|...++-++ ....+.++..+. |+--+|-| +..++|+|.|-
T Consensus 64 ~e~CL~rI~~GL~~yq~lL~~L~-~~~~~~~~~~~~-lq~~t~~L~~~i~~q~k~~~ 118 (165)
T d1bgca_ 64 LRGCLNQLHGGLFLYQGLLQALA-GISPELAPTLDT-LQLDVTDFATNIWLQMEDLG 118 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-TSSTTTHHHHHH-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCHHH-HHHHHHHHHHHHHHHHHCCC
T ss_conf 88999999999999999999998-558454211899-99999999999999865568
No 3
>d2oeza1 e.68.1.1 (A:1-245) Uncharacterized protein VP2528 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=29.59 E-value=11 Score=13.11 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=72.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 999999-9999997998976313632100489899999999999998998852046433212358899999058877999
Q 002752 46 ADLKKE-IKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSET 124 (885)
Q Consensus 46 ~DLKKE-IKKLQR~RDQIKtW~~s~eIKDK~~L~e~RK~IE~~MErFK~vEKEsKtKafSkEGL~~~~k~DP~ekeK~E~ 124 (885)
+|||.| ||-|.|++.+++.|...++|..++ |......|+..+..-. ...+ +-..-| -
T Consensus 56 ~DlK~eLikeLerq~~~l~~~~~~p~vd~~~-l~~~l~~i~~~~~~L~-----------------~~~~--~g~~Lr--e 113 (245)
T d2oeza1 56 IQLKSELAKDLEKQRLSYRHWLNVEGVDQEA-LNSLLNEIDVVHSQLM-----------------GAER--FGQALK--E 113 (245)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTTCTTSCHHH-HHHHHHHHHHHHHHHH-----------------HCCS--TTHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHHH-----------------CCCC--HHHHCC--H
T ss_conf 8799999999999999999983499867999-9999999999999973-----------------6772--100045--7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999997876787763200013899960167889999987999999999998552899
Q 002752 125 RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDE 189 (885)
Q Consensus 125 ~~wL~~~IdeL~~QiE~~EaEiE~L~~KKgK~~~~r~~~le~~ieRhk~Hi~kLE~iLRlL~N~~ 189 (885)
-+||+..-.-..----.++-++=.+..=-......|...++.|++-...-..-+.++|++|-...
T Consensus 114 de~L~~irqR~~iPGG~c~FDLP~yh~WL~~~~~~R~~~l~~W~~~l~pl~~ai~~iL~llR~s~ 178 (245)
T d2oeza1 114 DRFLSSIRQRFNLPGGSCCFDLPALHYWLHLPIERKKHDANQWQKSLKPLSDALTLWLKLARETG 178 (245)
T ss_dssp CHHHHHHHHHHHC----CGGGCHHHHHHHTSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 59999999974799987677877899997799999999999999877999999999999998169
No 4
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.84 E-value=17 Score=11.51 Aligned_cols=92 Identities=17% Similarity=0.271 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CCHH-H
Q ss_conf 46889877799879978999897621897046--88899999999999999799897631363-----------2100-4
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQ--KEKFEADLKKEIKKLQRYRDQIKTWIQSS-----------EIKD-K 74 (885)
Q Consensus 9 ~EIDr~lKKV~EGie~Fd~iyeK~~~a~n~nQ--KEKlE~DLKKEIKKLQR~RDQIKtW~~s~-----------eIKD-K 74 (885)
.+|.+.+.+|.+.|+.....+.|...+.+.-+ +++++..+..=.++-...|..||..-..+ +..- +
T Consensus 13 ~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 92 (124)
T d1ez3a_ 13 EEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRK 92 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999999999999999999999875798656679999999999999999999999999987886112489979999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 89899999999999998998852046
Q 002752 75 KALVDARKLIEREMERFKICEKETKT 100 (885)
Q Consensus 75 ~~L~e~RK~IE~~MErFK~vEKEsKt 100 (885)
....-.++.....|..|-.++.+.|.
T Consensus 93 ~q~~~L~~kf~e~m~~yq~~q~~yr~ 118 (124)
T d1ez3a_ 93 TQHSTLSRKFVEVMSEYNATQSDYRE 118 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999
No 5
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.80 E-value=19 Score=11.16 Aligned_cols=47 Identities=17% Similarity=0.336 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99879978999897621897046888999999999999997998976313
Q 002752 18 VQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQ 67 (885)
Q Consensus 18 V~EGie~Fd~iyeK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~ 67 (885)
|.+-++.....|+.+..... .-+.+||.-+ ++-++.+--+.+..|+.
T Consensus 24 i~~~~~~l~~rw~~L~~~~~-~R~~~Le~~~--~~~~F~~~~~~l~~Wl~ 70 (156)
T d1owaa_ 24 IQERRQEVLTRYQSFKERVA-ERGQKLEDSY--HLQVFKRDADDLGKWIM 70 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHCCCSCSCH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999-9999999999--99999999999999999
No 6
>d1alua_ a.26.1.1 (A:) Interleukin-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.33 E-value=36 Score=9.08 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8987779987997899989
Q 002752 12 DRVLKKVQEGVDVFDSIWN 30 (885)
Q Consensus 12 Dr~lKKV~EGie~Fd~iye 30 (885)
|.||+|+..|+-.|...++
T Consensus 63 e~CL~ri~~GL~~yq~lL~ 81 (166)
T d1alua_ 63 ETCLVKIITGLLEFEVYLE 81 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 7899999999999999999
No 7
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia coli [TaxId: 562]}
Probab=7.20 E-value=44 Score=8.45 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHCCCCCC
Q ss_conf 65456689999982899855
Q 002752 195 VNDVKDLLEDYVERNQDDFE 214 (885)
Q Consensus 195 V~~IkedieyYvE~NqdDf~ 214 (885)
...|.+-|+.|.+.|.-|++
T Consensus 99 ~~~i~~~i~~ia~~~g~~lV 118 (143)
T d1u2ma_ 99 VTRIQTAVKSVANSQDIDLV 118 (143)
T ss_dssp HHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999999998798399
No 8
>d1i1rb_ a.26.1.1 (B:) Interleukin-6 {Human herpesvirus 8, Kaposi's sarcoma herpes-virus [TaxId: 37296]}
Probab=6.34 E-value=52 Score=7.91 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8987779987997899989
Q 002752 12 DRVLKKVQEGVDVFDSIWN 30 (885)
Q Consensus 12 Dr~lKKV~EGie~Fd~iye 30 (885)
|.||+|+..|+-.|...++
T Consensus 63 E~CL~rI~~GL~~yq~lL~ 81 (167)
T d1i1rb_ 63 TSCLKKLADGFFEFEVLFK 81 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999
No 9
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.97 E-value=56 Score=7.67 Aligned_cols=94 Identities=16% Similarity=0.300 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHCCCCCH-H-HHHHHHHHH
Q ss_conf 4688987779987997899989762189704688899999---9999999-99799897631363210-0-489899999
Q 002752 9 GEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADL---KKEIKKL-QRYRDQIKTWIQSSEIK-D-KKALVDARK 82 (885)
Q Consensus 9 ~EIDr~lKKV~EGie~Fd~iyeK~~~a~n~nQKEKlE~DL---KKEIKKL-QR~RDQIKtW~~s~eIK-D-K~~L~e~RK 82 (885)
.+|...+.+|...+......+.++.........+++...+ ..+|.+| +++++-|+.+..+.... - +..+.-..+
T Consensus 12 ~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~ 91 (196)
T d1fioa_ 12 SQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQ 91 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999999999999998669998678999999999999999999999999999750455202789999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999899885204643
Q 002752 83 LIEREMERFKICEKETKTKA 102 (885)
Q Consensus 83 ~IE~~MErFK~vEKEsKtKa 102 (885)
..-..|..|+.+.+..+.+.
T Consensus 92 ~l~~~~~~f~~~q~~~~~~~ 111 (196)
T d1fioa_ 92 RFLKLIQDYRIVDSNYKEEN 111 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999
No 10
>d2b5dx1 a.8.3.3 (X:415-528) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]}
Probab=5.81 E-value=58 Score=7.55 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999987999999999998552899993556545668
Q 002752 165 ETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDL 201 (885)
Q Consensus 165 e~~ieRhk~Hi~kLE~iLRlL~N~~ldpe~V~~Iked 201 (885)
+...+|.+-|+.++..|..+|.++.++.+-+.++...
T Consensus 61 eYA~~R~~~Hl~rF~~L~~~l~~~~id~~~L~~~E~~ 97 (114)
T d2b5dx1 61 QYAENRTKLHIKRFLNLYDQLVSGRIDEEMLRYYEWT 97 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9999899999999999999987489899999999987
Done!