Query 002753
Match_columns 884
No_of_seqs 566 out of 3492
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2006 WD40 repeat protein [G 100.0 3.1E-72 6.7E-77 630.6 27.0 584 256-875 148-769 (1023)
2 PF07064 RIC1: RIC1; InterPro 100.0 6.5E-51 1.4E-55 416.0 14.8 185 680-875 3-190 (258)
3 KOG0291 WD40-repeat-containing 100.0 1.5E-33 3.4E-38 306.1 43.7 408 21-484 98-553 (893)
4 KOG0271 Notchless-like WD40 re 100.0 6.4E-35 1.4E-39 294.3 24.8 326 56-479 103-479 (480)
5 KOG0271 Notchless-like WD40 re 100.0 1.3E-32 2.9E-37 277.6 24.7 316 20-418 114-479 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-31 4.8E-36 272.6 22.8 275 67-479 175-458 (459)
7 KOG0318 WD40 repeat stress pro 100.0 7.1E-27 1.5E-31 245.4 45.1 445 21-571 61-602 (603)
8 KOG0291 WD40-repeat-containing 100.0 3.4E-26 7.5E-31 249.2 47.6 451 22-571 58-550 (893)
9 KOG0318 WD40 repeat stress pro 100.0 2.4E-27 5.1E-32 249.0 35.5 375 23-419 194-601 (603)
10 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-29 6.3E-34 257.2 19.7 264 222-526 179-457 (459)
11 KOG0319 WD40-repeat-containing 100.0 4.4E-27 9.6E-32 256.3 35.3 229 226-482 373-620 (775)
12 KOG0286 G-protein beta subunit 100.0 8.4E-27 1.8E-31 228.7 26.5 288 59-479 49-343 (343)
13 KOG0279 G protein beta subunit 99.9 5.6E-25 1.2E-29 214.8 27.5 268 204-512 11-301 (315)
14 KOG0306 WD40-repeat-containing 99.9 6.7E-24 1.5E-28 231.4 38.0 265 222-529 377-664 (888)
15 KOG0263 Transcription initiati 99.9 8.4E-26 1.8E-30 249.3 21.3 228 221-482 381-650 (707)
16 KOG0273 Beta-transducin family 99.9 7.8E-25 1.7E-29 227.5 26.8 324 67-512 178-511 (524)
17 KOG0286 G-protein beta subunit 99.9 1.1E-24 2.5E-29 213.8 26.1 277 202-526 49-342 (343)
18 KOG0279 G protein beta subunit 99.9 7.7E-24 1.7E-28 206.9 28.4 274 254-571 12-313 (315)
19 KOG0263 Transcription initiati 99.9 2.2E-25 4.8E-30 246.0 19.8 242 204-470 447-703 (707)
20 KOG0645 WD40 repeat protein [G 99.9 9E-24 1.9E-28 205.5 27.6 278 253-571 10-311 (312)
21 KOG0645 WD40 repeat protein [G 99.9 1.1E-23 2.5E-28 204.8 27.1 270 205-528 11-310 (312)
22 KOG0319 WD40-repeat-containing 99.9 3.8E-24 8.2E-29 233.5 26.5 307 24-418 287-617 (775)
23 KOG0284 Polyadenylation factor 99.9 3.3E-25 7.2E-30 226.4 16.5 265 224-529 102-380 (464)
24 KOG0284 Polyadenylation factor 99.9 3.1E-25 6.7E-30 226.6 16.3 277 68-481 97-380 (464)
25 KOG0276 Vesicle coat complex C 99.9 6.6E-24 1.4E-28 226.8 25.6 354 131-571 12-380 (794)
26 KOG0306 WD40-repeat-containing 99.9 4.7E-22 1E-26 217.1 36.2 280 175-483 372-666 (888)
27 KOG0273 Beta-transducin family 99.9 6.1E-23 1.3E-27 213.5 27.6 252 23-361 239-504 (524)
28 KOG0315 G-protein beta subunit 99.9 3.4E-23 7.4E-28 198.9 21.2 225 226-484 48-291 (311)
29 KOG0276 Vesicle coat complex C 99.9 1.2E-21 2.7E-26 209.6 34.1 251 68-401 14-277 (794)
30 KOG0281 Beta-TrCP (transducin 99.9 7.8E-24 1.7E-28 211.5 14.3 272 132-483 197-479 (499)
31 KOG0295 WD40 repeat-containing 99.9 2.7E-23 5.9E-28 209.8 17.9 255 224-512 114-394 (406)
32 KOG0266 WD40 repeat-containing 99.9 2.9E-22 6.2E-27 228.2 26.8 267 137-480 166-453 (456)
33 KOG0266 WD40 repeat-containing 99.9 3.6E-22 7.7E-27 227.4 27.5 267 224-528 165-453 (456)
34 KOG0315 G-protein beta subunit 99.9 1.4E-21 3E-26 187.9 26.3 278 32-398 11-305 (311)
35 KOG0281 Beta-TrCP (transducin 99.9 5.1E-23 1.1E-27 205.7 14.4 256 227-529 204-477 (499)
36 KOG0278 Serine/threonine kinas 99.9 6.6E-23 1.4E-27 196.8 14.0 236 204-484 55-300 (334)
37 KOG0292 Vesicle coat complex C 99.9 6.2E-20 1.3E-24 203.4 37.8 266 137-482 16-322 (1202)
38 KOG0285 Pleiotropic regulator 99.9 1.7E-21 3.6E-26 196.0 23.2 274 205-529 148-439 (460)
39 KOG0285 Pleiotropic regulator 99.9 2E-21 4.3E-26 195.5 22.4 275 254-570 148-438 (460)
40 KOG0295 WD40 repeat-containing 99.9 3.2E-21 6.8E-26 195.0 22.4 237 204-480 146-405 (406)
41 KOG0296 Angio-associated migra 99.9 1.6E-20 3.6E-25 190.0 27.4 317 66-481 63-398 (399)
42 PLN00181 protein SPA1-RELATED; 99.9 1.6E-20 3.5E-25 229.9 31.7 272 222-527 487-791 (793)
43 KOG1408 WD40 repeat protein [F 99.9 2.3E-19 4.9E-24 194.5 36.2 493 21-572 124-714 (1080)
44 PLN00181 protein SPA1-RELATED; 99.9 4.5E-20 9.7E-25 225.9 34.7 318 39-480 457-792 (793)
45 KOG0293 WD40 repeat-containing 99.9 5.3E-21 1.1E-25 195.7 21.1 273 25-381 230-513 (519)
46 cd00200 WD40 WD40 domain, foun 99.9 1E-19 2.3E-24 193.6 31.4 270 205-527 6-289 (289)
47 KOG0313 Microtubule binding pr 99.9 2.4E-20 5.3E-25 189.5 23.8 271 131-480 104-417 (423)
48 KOG0316 Conserved WD40 repeat- 99.9 2.6E-20 5.7E-25 177.7 22.5 262 254-561 14-290 (307)
49 cd00200 WD40 WD40 domain, foun 99.9 8.5E-20 1.8E-24 194.3 29.6 270 130-479 7-289 (289)
50 KOG0265 U5 snRNP-specific prot 99.9 2.7E-20 5.9E-25 183.9 23.3 268 204-512 43-326 (338)
51 KOG0305 Anaphase promoting com 99.9 5.3E-20 1.2E-24 200.9 27.1 270 30-482 187-462 (484)
52 KOG0265 U5 snRNP-specific prot 99.9 1.1E-19 2.4E-24 179.6 25.9 221 254-507 44-277 (338)
53 KOG1407 WD40 repeat protein [F 99.9 7.3E-20 1.6E-24 177.4 23.9 259 205-513 17-289 (313)
54 KOG0293 WD40 repeat-containing 99.9 2E-20 4.3E-25 191.6 20.2 222 225-481 276-513 (519)
55 KOG0296 Angio-associated migra 99.9 3E-19 6.4E-24 181.0 27.6 280 128-486 60-361 (399)
56 KOG0277 Peroxisomal targeting 99.9 4.3E-20 9.3E-25 178.3 20.4 201 203-480 99-308 (311)
57 KOG0640 mRNA cleavage stimulat 99.9 1.8E-20 3.9E-25 185.2 18.0 238 204-480 168-425 (430)
58 KOG0292 Vesicle coat complex C 99.9 2.4E-19 5.2E-24 198.8 27.8 236 207-484 8-283 (1202)
59 KOG0282 mRNA splicing factor [ 99.8 6.3E-21 1.4E-25 199.5 14.3 245 253-512 210-493 (503)
60 KOG0275 Conserved WD40 repeat- 99.8 9.6E-21 2.1E-25 187.7 12.8 258 222-516 217-499 (508)
61 KOG0643 Translation initiation 99.8 4.8E-19 1E-23 172.2 23.5 255 202-481 4-317 (327)
62 KOG1408 WD40 repeat protein [F 99.8 1.6E-18 3.5E-23 187.9 29.1 416 21-482 167-714 (1080)
63 KOG2048 WD40 repeat protein [G 99.8 9.4E-17 2E-21 174.8 42.0 420 19-525 25-547 (691)
64 PTZ00421 coronin; Provisional 99.8 1.7E-18 3.6E-23 196.5 28.3 201 253-485 71-294 (493)
65 KOG0283 WD40 repeat-containing 99.8 5.4E-19 1.2E-23 197.6 23.6 203 203-482 364-577 (712)
66 KOG0641 WD40 repeat protein [G 99.8 8.7E-18 1.9E-22 159.2 27.4 262 24-362 37-331 (350)
67 KOG0313 Microtubule binding pr 99.8 9.7E-19 2.1E-23 178.0 21.9 263 230-528 115-417 (423)
68 KOG2096 WD40 repeat protein [G 99.8 1.8E-18 3.9E-23 171.9 23.1 286 21-373 88-392 (420)
69 KOG0274 Cdc4 and related F-box 99.8 1.5E-18 3.3E-23 197.0 24.2 266 134-485 210-486 (537)
70 KOG2096 WD40 repeat protein [G 99.8 4.8E-18 1E-22 168.9 23.9 301 64-476 82-397 (420)
71 KOG0277 Peroxisomal targeting 99.8 1.2E-18 2.6E-23 168.3 17.5 217 256-505 59-287 (311)
72 KOG1539 WD repeat protein [Gen 99.8 1.3E-15 2.8E-20 169.2 43.2 444 31-571 46-564 (910)
73 KOG2106 Uncharacterized conser 99.8 4.5E-17 9.8E-22 171.1 29.4 358 23-480 250-625 (626)
74 KOG0310 Conserved WD40 repeat- 99.8 9.5E-18 2.1E-22 176.3 24.0 273 65-476 24-303 (487)
75 KOG0275 Conserved WD40 repeat- 99.8 3.4E-19 7.5E-24 176.8 12.1 278 257-568 214-506 (508)
76 KOG0316 Conserved WD40 repeat- 99.8 3.2E-18 6.9E-23 163.5 18.1 234 205-484 14-260 (307)
77 PTZ00420 coronin; Provisional 99.8 4.6E-17 9.9E-22 185.6 30.4 238 239-509 53-319 (568)
78 KOG0288 WD40 repeat protein Ti 99.8 1E-18 2.2E-23 179.5 15.2 252 226-512 183-449 (459)
79 KOG0308 Conserved WD40 repeat- 99.8 9.5E-19 2.1E-23 188.9 15.5 222 228-482 35-286 (735)
80 KOG1407 WD40 repeat protein [F 99.8 1.5E-17 3.2E-22 161.6 22.1 254 23-362 24-284 (313)
81 KOG1063 RNA polymerase II elon 99.8 2.3E-16 5E-21 171.9 33.8 392 69-529 193-699 (764)
82 KOG0294 WD40 repeat-containing 99.8 1.5E-17 3.1E-22 165.7 22.5 221 227-483 50-283 (362)
83 KOG2048 WD40 repeat protein [G 99.8 5.9E-16 1.3E-20 168.7 36.3 277 68-418 26-317 (691)
84 KOG0772 Uncharacterized conser 99.8 8.4E-18 1.8E-22 176.9 20.8 284 70-416 170-483 (641)
85 KOG0310 Conserved WD40 repeat- 99.8 1.4E-17 3E-22 175.0 22.3 285 243-571 12-309 (487)
86 KOG1274 WD40 repeat protein [G 99.8 5.8E-17 1.2E-21 182.0 26.9 208 66-342 12-223 (933)
87 PTZ00421 coronin; Provisional 99.8 6.1E-17 1.3E-21 183.9 27.6 197 204-423 71-293 (493)
88 KOG0973 Histone transcription 99.8 2.9E-17 6.3E-22 188.2 25.0 260 224-514 19-345 (942)
89 KOG0973 Histone transcription 99.8 3.7E-17 8.1E-22 187.4 25.8 304 68-483 14-357 (942)
90 KOG1446 Histone H3 (Lys4) meth 99.8 2.3E-16 4.9E-21 158.1 28.1 274 67-418 14-301 (311)
91 KOG0283 WD40 repeat-containing 99.8 1.6E-17 3.4E-22 186.0 21.7 246 255-571 265-576 (712)
92 KOG0289 mRNA splicing factor [ 99.8 7E-17 1.5E-21 166.9 24.0 229 228-488 229-469 (506)
93 KOG1063 RNA polymerase II elon 99.8 6.1E-15 1.3E-19 160.9 39.7 492 32-572 26-700 (764)
94 KOG0274 Cdc4 and related F-box 99.8 6.2E-17 1.3E-21 183.9 25.3 262 260-571 212-482 (537)
95 KOG0640 mRNA cleavage stimulat 99.8 6.2E-18 1.4E-22 167.4 14.0 198 254-485 109-339 (430)
96 KOG0641 WD40 repeat protein [G 99.8 8E-16 1.7E-20 146.0 27.1 300 68-419 33-348 (350)
97 KOG0643 Translation initiation 99.8 5.9E-17 1.3E-21 157.8 19.9 279 253-571 6-317 (327)
98 KOG0282 mRNA splicing factor [ 99.8 4.5E-18 9.8E-23 178.3 12.9 239 226-479 222-503 (503)
99 KOG0300 WD40 repeat-containing 99.8 8.4E-17 1.8E-21 159.6 20.4 272 204-510 144-458 (481)
100 KOG1539 WD repeat protein [Gen 99.8 1.7E-15 3.6E-20 168.4 32.8 405 31-480 173-647 (910)
101 PTZ00420 coronin; Provisional 99.7 2.8E-16 6.1E-21 179.1 27.0 217 204-464 70-318 (568)
102 KOG0639 Transducin-like enhanc 99.7 7.4E-17 1.6E-21 169.0 19.4 228 206-480 463-703 (705)
103 KOG2919 Guanine nucleotide-bin 99.7 5.5E-16 1.2E-20 154.8 21.4 219 227-474 120-362 (406)
104 KOG0647 mRNA export protein (c 99.7 8.9E-16 1.9E-20 152.3 22.6 234 257-529 27-281 (347)
105 KOG0305 Anaphase promoting com 99.7 4.1E-16 8.8E-21 170.7 21.9 264 262-571 183-461 (484)
106 KOG0299 U3 snoRNP-associated p 99.7 1E-15 2.2E-20 159.9 23.7 262 222-512 146-443 (479)
107 KOG0288 WD40 repeat protein Ti 99.7 4.2E-17 9.2E-22 167.7 13.1 227 204-478 215-458 (459)
108 KOG0301 Phospholipase A2-activ 99.7 6E-16 1.3E-20 168.8 22.3 214 228-486 69-293 (745)
109 KOG1446 Histone H3 (Lys4) meth 99.7 1.5E-14 3.2E-19 145.2 30.4 276 21-384 16-306 (311)
110 KOG1332 Vesicle coat complex C 99.7 3.4E-16 7.4E-21 150.8 16.1 249 254-574 8-289 (299)
111 KOG0772 Uncharacterized conser 99.7 1.4E-15 3E-20 160.4 22.0 286 254-569 164-485 (641)
112 KOG0264 Nucleosome remodeling 99.7 2.4E-15 5.2E-20 157.4 23.7 200 232-485 192-408 (422)
113 KOG0294 WD40 repeat-containing 99.7 1.9E-15 4E-20 150.9 21.5 236 254-574 40-284 (362)
114 KOG0269 WD40 repeat-containing 99.7 3.6E-16 7.9E-21 172.4 18.0 182 229-421 145-341 (839)
115 KOG1332 Vesicle coat complex C 99.7 8.4E-16 1.8E-20 148.1 18.1 235 229-489 22-295 (299)
116 KOG0308 Conserved WD40 repeat- 99.7 2.3E-16 4.9E-21 170.7 15.4 231 225-480 80-326 (735)
117 KOG0289 mRNA splicing factor [ 99.7 2.8E-15 6.1E-20 155.2 22.0 218 259-512 221-450 (506)
118 KOG2106 Uncharacterized conser 99.7 5.7E-13 1.2E-17 140.6 39.2 346 22-480 157-520 (626)
119 KOG0299 U3 snoRNP-associated p 99.7 1.7E-15 3.8E-20 158.2 20.2 272 255-560 140-444 (479)
120 KOG1273 WD40 repeat protein [G 99.7 3E-15 6.4E-20 149.1 20.0 237 256-529 23-280 (405)
121 KOG0278 Serine/threonine kinas 99.7 1.5E-15 3.2E-20 146.6 17.3 184 224-424 106-301 (334)
122 KOG0301 Phospholipase A2-activ 99.7 2.5E-15 5.5E-20 164.0 20.4 213 228-481 23-249 (745)
123 KOG0639 Transducin-like enhanc 99.7 1.2E-15 2.6E-20 160.1 16.9 264 25-373 425-693 (705)
124 KOG1445 Tumor-specific antigen 99.7 1E-13 2.2E-18 149.2 31.7 236 267-572 590-843 (1012)
125 KOG0268 Sof1-like rRNA process 99.7 9.8E-16 2.1E-20 155.3 15.2 249 254-528 63-344 (433)
126 KOG1274 WD40 repeat protein [G 99.7 2.2E-14 4.8E-19 161.5 26.9 264 22-362 16-282 (933)
127 KOG0267 Microtubule severing p 99.7 1.1E-16 2.3E-21 175.1 8.3 215 227-475 37-261 (825)
128 KOG0300 WD40 repeat-containing 99.7 3.4E-15 7.4E-20 148.3 16.9 198 253-484 144-389 (481)
129 KOG0647 mRNA export protein (c 99.6 3.2E-14 7E-19 141.3 23.5 240 226-496 35-295 (347)
130 KOG0646 WD40 repeat protein [G 99.6 2.2E-14 4.8E-19 150.3 21.0 228 238-484 59-310 (476)
131 KOG0264 Nucleosome remodeling 99.6 1.4E-14 3E-19 151.7 19.0 270 64-420 121-404 (422)
132 KOG4283 Transcription-coupled 99.6 1.7E-14 3.6E-19 142.4 18.0 220 255-484 41-279 (397)
133 KOG0646 WD40 repeat protein [G 99.6 8.1E-15 1.8E-19 153.6 16.6 236 19-360 81-329 (476)
134 KOG0650 WD40 repeat nucleolar 99.6 2.5E-14 5.3E-19 153.6 20.5 277 254-593 397-700 (733)
135 KOG2055 WD40 repeat protein [G 99.6 7.6E-14 1.6E-18 145.9 23.4 274 133-481 214-512 (514)
136 KOG0268 Sof1-like rRNA process 99.6 3.5E-15 7.5E-20 151.3 12.8 273 69-384 68-348 (433)
137 KOG0267 Microtubule severing p 99.6 1.2E-15 2.7E-20 166.9 9.5 232 240-511 14-253 (825)
138 KOG1036 Mitotic spindle checkp 99.6 9E-14 1.9E-18 138.9 21.7 239 208-484 13-265 (323)
139 KOG1036 Mitotic spindle checkp 99.6 3.8E-13 8.2E-18 134.5 24.9 271 68-472 14-294 (323)
140 KOG0269 WD40 repeat-containing 99.6 1.1E-14 2.4E-19 160.9 14.8 195 262-528 93-295 (839)
141 KOG1034 Transcriptional repres 99.6 1.6E-13 3.5E-18 137.8 21.6 220 232-481 107-383 (385)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 2.3E-12 5E-17 139.3 30.2 224 224-484 36-282 (300)
143 KOG2055 WD40 repeat protein [G 99.6 4.5E-13 9.8E-18 140.2 22.5 277 66-420 212-512 (514)
144 KOG1273 WD40 repeat protein [G 99.5 1.8E-12 3.8E-17 129.6 24.6 151 262-424 159-326 (405)
145 KOG2445 Nuclear pore complex c 99.5 8.7E-13 1.9E-17 131.6 22.1 254 207-481 12-318 (361)
146 KOG4283 Transcription-coupled 99.5 4E-13 8.7E-18 132.8 18.9 290 133-480 44-364 (397)
147 KOG2445 Nuclear pore complex c 99.5 1.5E-12 3.2E-17 129.9 22.7 278 68-424 14-322 (361)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 6.4E-12 1.4E-16 135.9 30.1 274 231-544 2-291 (300)
149 KOG4378 Nuclear protein COP1 [ 99.5 7E-13 1.5E-17 139.4 19.0 214 257-506 80-303 (673)
150 KOG0270 WD40 repeat-containing 99.5 7.2E-13 1.6E-17 138.3 15.4 221 228-483 190-451 (463)
151 KOG1524 WD40 repeat-containing 99.4 2.9E-12 6.4E-17 136.0 18.2 138 268-419 75-215 (737)
152 KOG0302 Ribosome Assembly prot 99.4 2.8E-12 6E-17 131.2 16.3 119 203-338 252-379 (440)
153 KOG0303 Actin-binding protein 99.4 1.2E-11 2.5E-16 127.3 19.8 211 300-571 74-294 (472)
154 KOG4328 WD40 protein [Function 99.4 8.4E-12 1.8E-16 130.8 19.0 193 259-481 189-399 (498)
155 KOG1538 Uncharacterized conser 99.4 7.1E-12 1.5E-16 135.9 18.1 263 259-571 14-293 (1081)
156 KOG0650 WD40 repeat nucleolar 99.4 2.3E-11 4.9E-16 131.2 21.5 203 206-478 519-732 (733)
157 KOG0321 WD40 repeat-containing 99.4 9.8E-12 2.1E-16 135.0 18.7 249 202-483 94-393 (720)
158 KOG4328 WD40 protein [Function 99.4 2.7E-11 5.8E-16 127.1 20.2 275 67-417 186-492 (498)
159 KOG0771 Prolactin regulatory e 99.4 8.4E-12 1.8E-16 130.2 16.0 185 260-507 148-335 (398)
160 KOG1538 Uncharacterized conser 99.4 1.2E-11 2.5E-16 134.3 17.5 231 203-482 48-294 (1081)
161 KOG4378 Nuclear protein COP1 [ 99.4 2.3E-11 5.1E-16 128.2 19.0 287 31-401 3-301 (673)
162 COG2319 FOG: WD40 repeat [Gene 99.4 7.3E-09 1.6E-13 116.5 40.6 351 23-482 69-443 (466)
163 KOG0771 Prolactin regulatory e 99.4 1.7E-11 3.7E-16 127.9 16.9 206 20-338 145-355 (398)
164 KOG0302 Ribosome Assembly prot 99.4 1.9E-11 4.1E-16 125.2 16.3 200 254-483 148-380 (440)
165 PRK11028 6-phosphogluconolacto 99.3 2.2E-09 4.8E-14 118.1 34.0 234 35-337 7-258 (330)
166 KOG1009 Chromatin assembly com 99.3 2.8E-11 6.1E-16 125.2 16.5 134 226-372 21-183 (434)
167 KOG0270 WD40 repeat-containing 99.3 2E-11 4.3E-16 127.7 15.4 193 267-484 191-407 (463)
168 KOG0307 Vesicle coat complex C 99.3 4.3E-12 9.4E-17 146.9 11.1 246 208-487 64-333 (1049)
169 KOG1963 WD40 repeat protein [G 99.3 2.7E-09 5.9E-14 121.0 33.0 357 23-483 164-540 (792)
170 KOG1524 WD40 repeat-containing 99.3 2.9E-10 6.4E-15 121.1 23.3 124 226-361 112-238 (737)
171 KOG1034 Transcriptional repres 99.3 1E-10 2.2E-15 118.0 18.6 203 256-484 88-340 (385)
172 KOG0644 Uncharacterized conser 99.3 4.2E-12 9.1E-17 141.3 9.0 226 222-481 194-468 (1113)
173 KOG0649 WD40 repeat protein [G 99.3 2.6E-10 5.7E-15 110.3 20.0 241 67-360 10-256 (325)
174 KOG0322 G-protein beta subunit 99.3 7E-11 1.5E-15 115.7 15.0 268 21-337 16-323 (323)
175 KOG1517 Guanine nucleotide bin 99.3 2.4E-10 5.2E-15 130.6 21.5 296 70-483 1067-1383(1387)
176 KOG0307 Vesicle coat complex C 99.3 8.7E-12 1.9E-16 144.4 10.0 230 262-529 70-327 (1049)
177 KOG0303 Actin-binding protein 99.3 4.2E-11 9.1E-16 123.3 13.5 194 205-421 78-295 (472)
178 KOG2919 Guanine nucleotide-bin 99.3 2E-10 4.4E-15 115.5 17.4 226 29-328 121-361 (406)
179 KOG1007 WD repeat protein TSSC 99.3 1.1E-09 2.4E-14 108.7 22.2 216 256-479 123-358 (370)
180 KOG1009 Chromatin assembly com 99.3 1.2E-09 2.5E-14 113.4 22.9 79 254-341 120-199 (434)
181 KOG0321 WD40 repeat-containing 99.3 2.6E-10 5.5E-15 124.3 18.9 238 253-528 96-390 (720)
182 KOG2110 Uncharacterized conser 99.3 6.5E-09 1.4E-13 106.9 28.0 127 242-381 108-248 (391)
183 KOG1007 WD repeat protein TSSC 99.2 5.7E-10 1.2E-14 110.6 18.8 247 25-337 69-361 (370)
184 KOG1240 Protein kinase contain 99.2 2.5E-09 5.5E-14 124.5 26.3 219 71-347 1052-1283(1431)
185 KOG2394 WD40 protein DMR-N9 [G 99.2 6.9E-11 1.5E-15 126.2 11.6 144 208-361 219-385 (636)
186 KOG1963 WD40 repeat protein [G 99.2 1.3E-07 2.8E-12 107.6 38.2 298 255-576 159-492 (792)
187 PRK11028 6-phosphogluconolacto 99.2 1.4E-08 3.1E-13 111.7 30.5 267 233-529 5-304 (330)
188 PRK01742 tolB translocation pr 99.2 7E-10 1.5E-14 126.2 20.5 233 40-361 184-426 (429)
189 KOG1188 WD40 repeat protein [G 99.2 3.8E-10 8.2E-15 114.6 15.5 104 229-339 83-198 (376)
190 KOG2111 Uncharacterized conser 99.2 5.2E-09 1.1E-13 105.6 23.5 233 25-339 11-258 (346)
191 KOG0642 Cell-cycle nuclear pro 99.2 1.4E-10 2.9E-15 125.0 12.8 216 254-483 291-563 (577)
192 COG2319 FOG: WD40 repeat [Gene 99.2 4.8E-09 1E-13 117.9 26.5 229 226-486 73-319 (466)
193 PF04762 IKI3: IKI3 family; I 99.2 1.7E-05 3.7E-10 97.3 57.2 438 66-566 74-559 (928)
194 KOG1188 WD40 repeat protein [G 99.2 5.4E-10 1.2E-14 113.5 14.6 186 269-484 41-245 (376)
195 KOG1587 Cytoplasmic dynein int 99.1 2.8E-09 6.1E-14 120.8 21.6 264 19-339 242-518 (555)
196 KOG4497 Uncharacterized conser 99.1 1.4E-08 3.1E-13 102.5 23.6 221 22-337 11-240 (447)
197 KOG4227 WD40 repeat protein [G 99.1 2.8E-09 6E-14 109.5 17.5 247 254-529 53-322 (609)
198 KOG1445 Tumor-specific antigen 99.1 1.4E-09 3.1E-14 117.8 14.9 118 205-340 624-753 (1012)
199 KOG2110 Uncharacterized conser 99.1 2.2E-08 4.7E-13 103.2 22.8 229 24-339 10-250 (391)
200 KOG1517 Guanine nucleotide bin 99.1 1.1E-08 2.3E-13 117.5 22.6 278 21-362 1066-1363(1387)
201 KOG0649 WD40 repeat protein [G 99.1 1.6E-08 3.4E-13 98.2 20.4 238 137-419 17-273 (325)
202 PRK01742 tolB translocation pr 99.1 5.5E-09 1.2E-13 118.9 19.6 206 224-463 209-426 (429)
203 KOG0322 G-protein beta subunit 99.1 4E-09 8.6E-14 103.6 15.5 226 227-480 23-322 (323)
204 KOG0290 Conserved WD40 repeat- 99.1 9.8E-09 2.1E-13 102.1 18.0 186 255-482 94-319 (364)
205 KOG4227 WD40 repeat protein [G 99.0 2.6E-08 5.6E-13 102.5 19.0 218 258-486 150-392 (609)
206 KOG0644 Uncharacterized conser 99.0 6.2E-10 1.4E-14 124.3 7.1 217 252-483 185-428 (1113)
207 KOG2139 WD40 repeat protein [G 99.0 1E-08 2.2E-13 105.0 15.1 186 262-481 104-309 (445)
208 PF08662 eIF2A: Eukaryotic tra 99.0 2.5E-08 5.4E-13 99.9 17.8 114 208-342 59-184 (194)
209 KOG1523 Actin-related protein 99.0 3.7E-08 7.9E-13 99.6 18.2 233 257-511 11-264 (361)
210 KOG2111 Uncharacterized conser 98.9 3.5E-07 7.7E-12 92.6 24.1 182 31-287 58-257 (346)
211 KOG1310 WD40 repeat protein [G 98.9 7E-09 1.5E-13 111.1 12.4 160 306-480 49-230 (758)
212 PF08662 eIF2A: Eukaryotic tra 98.9 7.2E-08 1.6E-12 96.6 18.9 97 258-373 60-162 (194)
213 KOG2139 WD40 repeat protein [G 98.9 3.1E-07 6.7E-12 94.3 22.7 173 254-475 193-368 (445)
214 KOG4497 Uncharacterized conser 98.9 4.1E-08 8.9E-13 99.3 15.9 130 221-362 11-145 (447)
215 KOG1587 Cytoplasmic dynein int 98.9 8.8E-08 1.9E-12 108.8 19.8 231 229-482 254-517 (555)
216 KOG2394 WD40 protein DMR-N9 [G 98.9 7E-08 1.5E-12 103.7 17.7 97 211-316 283-383 (636)
217 PRK05137 tolB translocation pr 98.9 3.7E-07 7.9E-12 104.4 24.9 195 254-487 198-418 (435)
218 PRK03629 tolB translocation pr 98.9 1.9E-07 4.2E-12 106.1 22.1 123 225-360 293-427 (429)
219 KOG1272 WD40-repeat-containing 98.8 1.1E-08 2.5E-13 107.8 9.2 225 257-528 130-361 (545)
220 KOG0642 Cell-cycle nuclear pro 98.8 3E-08 6.6E-13 107.2 12.6 265 67-390 294-570 (577)
221 KOG1240 Protein kinase contain 98.8 3.8E-07 8.2E-12 106.9 21.9 258 218-483 1049-1336(1431)
222 KOG0290 Conserved WD40 repeat- 98.8 1.2E-06 2.6E-11 87.6 21.3 194 256-474 149-358 (364)
223 PRK02889 tolB translocation pr 98.8 7.7E-07 1.7E-11 101.3 23.3 72 255-336 193-269 (427)
224 KOG1523 Actin-related protein 98.8 3.2E-07 6.9E-12 93.0 17.3 145 209-373 11-165 (361)
225 KOG2321 WD40 repeat protein [G 98.8 1E-06 2.2E-11 95.6 21.6 129 258-391 176-312 (703)
226 PF02239 Cytochrom_D1: Cytochr 98.8 1E-05 2.2E-10 89.4 30.4 295 221-544 39-359 (369)
227 PF15492 Nbas_N: Neuroblastoma 98.7 2.3E-06 5.1E-11 86.3 22.1 72 25-99 3-75 (282)
228 KOG2315 Predicted translation 98.7 7.2E-06 1.6E-10 89.3 27.2 145 257-419 218-389 (566)
229 PRK03629 tolB translocation pr 98.7 7.9E-07 1.7E-11 101.1 21.1 207 222-462 202-427 (429)
230 PRK04922 tolB translocation pr 98.7 1.1E-06 2.5E-11 100.2 21.8 192 254-483 200-413 (433)
231 PF04762 IKI3: IKI3 family; I 98.7 2.4E-05 5.3E-10 95.9 33.4 298 207-573 74-458 (928)
232 KOG1310 WD40 repeat protein [G 98.7 2.5E-07 5.4E-12 99.5 13.4 119 202-338 44-179 (758)
233 PRK02889 tolB translocation pr 98.6 1.1E-06 2.3E-11 100.1 19.2 151 224-388 201-367 (427)
234 KOG2321 WD40 repeat protein [G 98.6 5.6E-06 1.2E-10 90.1 20.6 255 20-362 52-325 (703)
235 TIGR02658 TTQ_MADH_Hv methylam 98.6 2.8E-05 6.1E-10 84.1 25.7 76 262-347 253-340 (352)
236 PF02239 Cytochrom_D1: Cytochr 98.6 2.7E-05 5.8E-10 86.2 26.2 283 25-389 42-355 (369)
237 COG2706 3-carboxymuconate cycl 98.5 0.00036 7.7E-09 72.9 32.3 209 261-529 92-321 (346)
238 PRK05137 tolB translocation pr 98.5 4.5E-06 9.8E-11 95.4 20.7 147 222-384 205-369 (435)
239 KOG0974 WD-repeat protein WDR6 98.5 8.8E-07 1.9E-11 102.7 14.6 149 262-483 139-290 (967)
240 COG5354 Uncharacterized protei 98.5 4.2E-05 9.1E-10 82.5 26.0 133 306-474 273-421 (561)
241 KOG4547 WD40 repeat-containing 98.5 1.9E-06 4.1E-11 94.4 16.0 209 76-338 2-221 (541)
242 KOG1912 WD40 repeat protein [G 98.5 7.3E-05 1.6E-09 84.2 28.4 275 262-572 236-552 (1062)
243 PF10282 Lactonase: Lactonase, 98.5 0.00045 9.8E-09 76.3 35.4 271 24-343 41-330 (345)
244 KOG1354 Serine/threonine prote 98.5 6.9E-06 1.5E-10 84.1 18.8 257 68-348 26-313 (433)
245 KOG1272 WD40-repeat-containing 98.5 1.2E-07 2.6E-12 100.3 6.4 217 224-479 135-360 (545)
246 TIGR02800 propeller_TolB tol-p 98.5 1.7E-05 3.7E-10 90.3 24.6 77 254-340 186-269 (417)
247 PRK04922 tolB translocation pr 98.5 1E-05 2.2E-10 92.4 22.2 208 278-528 184-410 (433)
248 KOG1354 Serine/threonine prote 98.5 1.5E-05 3.3E-10 81.7 20.5 287 23-339 29-361 (433)
249 KOG2041 WD40 repeat protein [G 98.5 0.00015 3.2E-09 80.9 29.5 220 64-336 11-246 (1189)
250 KOG4547 WD40 repeat-containing 98.5 1.7E-05 3.6E-10 87.2 20.9 123 267-401 69-192 (541)
251 KOG1334 WD40 repeat protein [G 98.4 3.2E-06 7E-11 90.2 14.5 287 19-384 142-469 (559)
252 KOG1334 WD40 repeat protein [G 98.4 2.2E-06 4.7E-11 91.5 12.7 154 262-421 287-467 (559)
253 KOG0974 WD-repeat protein WDR6 98.4 6.2E-06 1.3E-10 95.9 15.9 134 232-381 147-288 (967)
254 COG2706 3-carboxymuconate cycl 98.4 0.0027 5.8E-08 66.6 33.3 251 33-337 6-274 (346)
255 PF10282 Lactonase: Lactonase, 98.4 0.0041 8.8E-08 68.7 37.2 269 40-362 13-303 (345)
256 PRK01029 tolB translocation pr 98.3 6.8E-05 1.5E-09 85.1 23.6 125 225-361 287-425 (428)
257 PRK04792 tolB translocation pr 98.3 8.7E-05 1.9E-09 84.9 24.4 94 257-362 217-317 (448)
258 PRK01029 tolB translocation pr 98.3 6.1E-05 1.3E-09 85.5 22.6 106 224-336 190-310 (428)
259 KOG3881 Uncharacterized conser 98.3 1.7E-05 3.7E-10 82.8 16.2 142 232-386 163-325 (412)
260 PRK00178 tolB translocation pr 98.3 9.9E-05 2.2E-09 84.4 23.5 114 256-385 197-323 (430)
261 KOG2314 Translation initiation 98.3 0.00011 2.4E-09 79.9 21.8 76 21-105 212-298 (698)
262 PF00400 WD40: WD domain, G-be 98.2 2.4E-06 5.1E-11 61.0 5.5 38 290-335 2-39 (39)
263 PF15492 Nbas_N: Neuroblastoma 98.2 0.00053 1.1E-08 69.6 23.5 232 224-487 3-269 (282)
264 KOG4532 WD40-like repeat conta 98.2 0.0002 4.3E-09 71.3 19.5 81 257-341 204-286 (344)
265 TIGR02800 propeller_TolB tol-p 98.2 8.5E-05 1.8E-09 84.6 19.0 146 224-385 195-358 (417)
266 KOG3881 Uncharacterized conser 98.1 9.8E-05 2.1E-09 77.3 17.2 199 29-293 114-326 (412)
267 KOG2315 Predicted translation 98.1 0.0003 6.4E-09 77.1 21.3 71 261-342 316-395 (566)
268 KOG2041 WD40 repeat protein [G 98.1 0.00032 7E-09 78.3 21.7 147 206-362 12-168 (1189)
269 PRK04792 tolB translocation pr 98.1 0.00018 3.9E-09 82.3 20.4 128 223-362 222-361 (448)
270 PRK00178 tolB translocation pr 98.1 0.00025 5.3E-09 81.2 20.8 146 224-385 204-367 (430)
271 COG4946 Uncharacterized protei 98.0 0.0068 1.5E-07 65.2 28.3 94 258-362 403-500 (668)
272 KOG0309 Conserved WD40 repeat- 98.0 1.2E-05 2.7E-10 89.6 8.2 201 204-421 110-340 (1081)
273 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.026 5.7E-07 61.4 32.6 277 40-389 27-338 (352)
274 KOG0280 Uncharacterized conser 98.0 0.00028 6E-09 71.3 15.9 227 40-340 46-287 (339)
275 KOG4532 WD40-like repeat conta 97.9 0.0007 1.5E-08 67.6 17.4 169 262-488 164-338 (344)
276 KOG1409 Uncharacterized conser 97.9 0.00024 5.2E-09 73.2 14.3 226 227-484 33-273 (404)
277 KOG1064 RAVE (regulator of V-A 97.9 5.5E-05 1.2E-09 92.4 11.1 182 261-482 2213-2399(2439)
278 KOG2314 Translation initiation 97.9 0.0091 2E-07 65.6 26.6 271 224-529 216-525 (698)
279 KOG0280 Uncharacterized conser 97.9 0.00079 1.7E-08 68.1 17.2 113 213-338 126-242 (339)
280 KOG3914 WD repeat protein WDR4 97.9 0.0001 2.3E-09 77.5 11.4 85 253-346 147-232 (390)
281 KOG4190 Uncharacterized conser 97.8 2.8E-05 6.1E-10 83.8 6.9 168 254-484 732-909 (1034)
282 PF00400 WD40: WD domain, G-be 97.8 4.2E-05 9E-10 54.4 5.3 35 445-479 4-39 (39)
283 PRK04043 tolB translocation pr 97.8 0.0026 5.6E-08 71.8 22.4 68 262-340 324-403 (419)
284 PF04841 Vps16_N: Vps16, N-ter 97.8 0.011 2.4E-07 66.6 26.8 68 21-97 30-109 (410)
285 KOG1064 RAVE (regulator of V-A 97.8 0.00011 2.5E-09 89.8 11.0 186 134-390 2210-2407(2439)
286 COG4946 Uncharacterized protei 97.7 0.043 9.3E-07 59.3 28.2 98 254-362 356-455 (668)
287 PLN02919 haloacid dehalogenase 97.7 0.011 2.3E-07 74.5 28.2 116 224-341 745-892 (1057)
288 PF11768 DUF3312: Protein of u 97.7 0.00057 1.2E-08 76.0 14.7 75 257-342 260-334 (545)
289 PF06433 Me-amine-dh_H: Methyl 97.7 0.013 2.8E-07 62.2 23.8 257 25-348 41-331 (342)
290 KOG1912 WD40 repeat protein [G 97.7 0.0047 1E-07 70.2 21.2 111 451-571 520-656 (1062)
291 TIGR03300 assembly_YfgL outer 97.7 0.036 7.7E-07 62.2 28.6 248 267-568 104-376 (377)
292 PRK04043 tolB translocation pr 97.6 0.0055 1.2E-07 69.2 20.8 91 260-362 191-288 (419)
293 KOG3621 WD40 repeat-containing 97.6 0.004 8.7E-08 70.4 18.4 112 224-338 39-155 (726)
294 PLN02919 haloacid dehalogenase 97.5 0.018 4E-07 72.4 25.6 212 259-484 626-891 (1057)
295 COG5354 Uncharacterized protei 97.5 0.028 6E-07 61.5 22.9 127 224-362 38-185 (561)
296 PF07433 DUF1513: Protein of u 97.5 0.015 3.2E-07 61.1 20.2 93 262-362 10-110 (305)
297 KOG3914 WD repeat protein WDR4 97.5 0.00079 1.7E-08 71.1 10.8 79 306-389 150-231 (390)
298 KOG0309 Conserved WD40 repeat- 97.4 0.0012 2.5E-08 74.5 11.0 95 254-358 111-209 (1081)
299 KOG1409 Uncharacterized conser 97.4 0.0034 7.4E-08 65.0 13.5 199 254-485 21-231 (404)
300 TIGR03300 assembly_YfgL outer 97.3 0.052 1.1E-06 60.8 24.8 143 269-421 191-339 (377)
301 KOG4640 Anaphase-promoting com 97.3 0.00061 1.3E-08 75.8 8.5 74 261-344 25-99 (665)
302 PF04841 Vps16_N: Vps16, N-ter 97.3 0.17 3.8E-06 57.0 28.1 70 451-528 215-286 (410)
303 KOG1920 IkappaB kinase complex 97.2 0.14 3E-06 61.9 26.6 278 258-574 70-368 (1265)
304 COG5170 CDC55 Serine/threonine 97.2 0.0025 5.5E-08 64.8 10.0 264 64-348 23-321 (460)
305 KOG2066 Vacuolar assembly/sort 97.1 0.011 2.3E-07 68.1 15.5 181 261-528 44-232 (846)
306 KOG1645 RING-finger-containing 97.1 0.027 5.9E-07 59.8 17.3 76 254-339 190-268 (463)
307 KOG4714 Nucleoporin [Nuclear s 97.1 0.0012 2.6E-08 65.8 6.7 152 306-482 88-255 (319)
308 KOG2114 Vacuolar assembly/sort 97.1 0.054 1.2E-06 62.9 20.5 137 258-404 126-267 (933)
309 COG5170 CDC55 Serine/threonine 97.0 0.019 4.1E-07 58.7 14.9 77 258-336 281-366 (460)
310 KOG2695 WD40 repeat protein [G 97.0 0.0022 4.8E-08 66.4 8.2 116 262-390 258-385 (425)
311 KOG4190 Uncharacterized conser 97.0 0.0067 1.4E-07 66.1 12.2 174 129-347 732-916 (1034)
312 KOG4714 Nucleoporin [Nuclear s 97.0 0.0018 3.9E-08 64.5 6.9 73 259-339 181-256 (319)
313 KOG1920 IkappaB kinase complex 97.0 0.17 3.6E-06 61.3 24.1 213 209-487 69-328 (1265)
314 PF07433 DUF1513: Protein of u 96.9 0.28 6.2E-06 51.7 22.6 75 19-98 4-86 (305)
315 PF08450 SGL: SMP-30/Gluconola 96.8 0.27 5.8E-06 51.4 22.6 90 262-358 139-232 (246)
316 KOG4640 Anaphase-promoting com 96.8 0.005 1.1E-07 68.9 9.5 94 209-317 21-115 (665)
317 PF04053 Coatomer_WDAD: Coatom 96.8 0.41 8.8E-06 54.2 24.5 63 259-337 35-97 (443)
318 smart00320 WD40 WD40 repeats. 96.6 0.0062 1.3E-07 41.6 5.4 30 306-335 11-40 (40)
319 KOG2079 Vacuolar assembly/sort 96.4 0.056 1.2E-06 64.3 14.9 74 267-348 98-171 (1206)
320 PRK11138 outer membrane biogen 96.3 2.7 5.8E-05 47.4 28.2 95 463-569 293-392 (394)
321 PF00930 DPPIV_N: Dipeptidyl p 96.2 1.3 2.8E-05 49.0 23.9 75 21-97 44-131 (353)
322 KOG3617 WD40 and TPR repeat-co 96.2 0.083 1.8E-06 61.0 14.0 69 260-337 63-131 (1416)
323 KOG2695 WD40 repeat protein [G 96.2 0.013 2.8E-07 60.8 7.0 109 230-347 264-386 (425)
324 KOG3621 WD40 repeat-containing 96.0 1.1 2.3E-05 51.7 21.6 103 258-373 34-143 (726)
325 PF11768 DUF3312: Protein of u 96.0 0.034 7.3E-07 62.4 9.9 72 20-100 260-332 (545)
326 KOG3617 WD40 and TPR repeat-co 96.0 0.03 6.6E-07 64.4 9.5 104 262-381 21-131 (1416)
327 PF14783 BBS2_Mid: Ciliary BBS 95.9 0.18 3.8E-06 44.6 12.1 93 227-332 11-109 (111)
328 PF00930 DPPIV_N: Dipeptidyl p 95.9 0.59 1.3E-05 51.8 19.7 220 277-529 22-268 (353)
329 KOG1832 HIV-1 Vpr-binding prot 95.8 0.012 2.6E-07 67.9 5.6 57 305-362 1099-1155(1516)
330 PF13360 PQQ_2: PQQ-like domai 95.8 0.68 1.5E-05 47.8 18.6 68 267-345 35-102 (238)
331 KOG0882 Cyclophilin-related pe 95.8 0.066 1.4E-06 57.7 10.5 202 228-486 18-236 (558)
332 KOG1275 PAB-dependent poly(A) 95.8 0.094 2E-06 61.3 12.3 176 267-480 146-341 (1118)
333 KOG2114 Vacuolar assembly/sort 95.6 1.2 2.5E-05 52.5 20.4 80 257-346 171-252 (933)
334 KOG2066 Vacuolar assembly/sort 95.6 0.4 8.6E-06 55.7 16.4 61 265-336 80-145 (846)
335 COG3490 Uncharacterized protei 95.6 1.2 2.5E-05 45.8 17.7 212 263-529 120-348 (366)
336 PRK11138 outer membrane biogen 95.5 1.7 3.6E-05 49.0 21.6 76 268-346 69-147 (394)
337 KOG4649 PQQ (pyrrolo-quinoline 95.2 4.1 8.8E-05 41.4 20.2 83 267-360 62-145 (354)
338 PF08450 SGL: SMP-30/Gluconola 95.2 4.7 0.0001 41.9 26.9 216 229-472 11-245 (246)
339 PF08596 Lgl_C: Lethal giant l 95.1 4 8.7E-05 45.6 22.2 93 70-162 4-117 (395)
340 smart00320 WD40 WD40 repeats. 95.0 0.036 7.7E-07 37.6 4.0 33 447-479 7-40 (40)
341 KOG4441 Proteins containing BT 95.0 0.69 1.5E-05 54.5 16.8 67 461-528 473-545 (571)
342 KOG1897 Damage-specific DNA bi 94.9 12 0.00026 45.3 34.5 29 135-163 588-616 (1096)
343 COG0823 TolB Periplasmic compo 94.9 0.48 1E-05 53.5 14.4 65 26-98 199-269 (425)
344 KOG1275 PAB-dependent poly(A) 94.8 0.6 1.3E-05 55.0 14.8 157 135-336 180-341 (1118)
345 PF06977 SdiA-regulated: SdiA- 94.8 5 0.00011 41.7 20.4 124 210-338 23-148 (248)
346 PF06433 Me-amine-dh_H: Methyl 94.8 7.3 0.00016 41.9 22.1 161 221-391 148-330 (342)
347 KOG1832 HIV-1 Vpr-binding prot 94.7 0.026 5.6E-07 65.3 3.8 184 258-482 1103-1292(1516)
348 PF13360 PQQ_2: PQQ-like domai 94.7 6 0.00013 40.6 23.6 63 276-346 1-63 (238)
349 KOG0882 Cyclophilin-related pe 94.5 0.66 1.4E-05 50.4 13.3 126 221-346 99-240 (558)
350 PF12894 Apc4_WD40: Anaphase-p 94.5 0.091 2E-06 38.8 4.9 34 307-340 11-44 (47)
351 PF12894 Apc4_WD40: Anaphase-p 93.6 0.15 3.1E-06 37.7 4.5 29 69-97 13-41 (47)
352 PF04053 Coatomer_WDAD: Coatom 93.2 8.1 0.00018 43.9 19.9 59 23-94 36-94 (443)
353 PF14783 BBS2_Mid: Ciliary BBS 92.6 6.2 0.00013 35.0 13.9 66 259-337 4-71 (111)
354 PF00780 CNH: CNH domain; Int 92.3 17 0.00037 38.4 23.9 63 266-340 5-67 (275)
355 PRK13616 lipoprotein LpqB; Pro 92.2 6.5 0.00014 46.5 18.2 106 223-333 354-472 (591)
356 KOG2444 WD40 repeat protein [G 92.0 0.46 9.9E-06 47.3 6.9 99 231-338 71-178 (238)
357 KOG2079 Vacuolar assembly/sort 92.0 0.81 1.8E-05 55.0 10.0 71 258-336 132-202 (1206)
358 KOG1898 Splicing factor 3b, su 91.8 39 0.00085 41.4 31.8 78 19-100 537-621 (1205)
359 PF08596 Lgl_C: Lethal giant l 91.7 26 0.00056 39.3 28.5 38 306-344 85-122 (395)
360 COG3391 Uncharacterized conser 91.6 25 0.00054 39.3 21.4 106 226-342 81-195 (381)
361 PRK13616 lipoprotein LpqB; Pro 91.5 7.8 0.00017 45.8 17.8 88 261-362 354-459 (591)
362 KOG1008 Uncharacterized conser 91.4 0.09 2E-06 59.2 1.5 203 258-528 58-274 (783)
363 KOG1897 Damage-specific DNA bi 90.8 46 0.001 40.5 36.8 79 262-345 589-667 (1096)
364 PF08553 VID27: VID27 cytoplas 90.6 2.6 5.7E-05 50.7 12.6 92 233-336 545-646 (794)
365 PF15390 DUF4613: Domain of un 89.2 41 0.00088 38.7 19.5 59 262-327 344-404 (671)
366 PRK02888 nitrous-oxide reducta 88.8 12 0.00026 43.7 15.6 98 315-420 284-404 (635)
367 PF10647 Gmad1: Lipoprotein Lp 88.7 34 0.00073 35.8 19.0 95 258-362 25-123 (253)
368 COG0823 TolB Periplasmic compo 88.6 1.5 3.2E-05 49.5 8.3 71 262-340 243-317 (425)
369 KOG3630 Nuclear pore complex, 88.1 5.3 0.00012 48.7 12.5 74 454-528 200-281 (1405)
370 PF02897 Peptidase_S9_N: Proly 88.0 52 0.0011 37.2 24.0 33 310-342 126-163 (414)
371 PF10168 Nup88: Nuclear pore c 87.7 1.9 4E-05 51.9 8.8 74 24-97 89-179 (717)
372 PF15390 DUF4613: Domain of un 87.1 20 0.00043 41.1 15.5 34 450-483 153-188 (671)
373 PF10313 DUF2415: Uncharacteri 86.5 1.9 4.2E-05 30.9 4.8 31 308-338 1-34 (43)
374 COG3204 Uncharacterized protei 86.2 48 0.001 34.9 21.5 176 208-401 85-262 (316)
375 PF02897 Peptidase_S9_N: Proly 84.7 76 0.0016 35.8 32.3 57 262-329 129-191 (414)
376 PF06977 SdiA-regulated: SdiA- 84.6 54 0.0012 34.1 24.0 216 22-282 24-246 (248)
377 KOG2377 Uncharacterized conser 84.2 75 0.0016 35.4 19.8 34 306-339 65-98 (657)
378 KOG1645 RING-finger-containing 83.3 2.6 5.5E-05 45.4 6.2 57 304-362 190-247 (463)
379 cd00216 PQQ_DH Dehydrogenases 83.2 97 0.0021 35.9 28.7 71 269-346 111-192 (488)
380 PF10313 DUF2415: Uncharacteri 83.2 3.4 7.4E-05 29.7 4.8 30 453-482 1-34 (43)
381 PF10168 Nup88: Nuclear pore c 83.1 20 0.00042 43.4 14.3 80 259-339 86-181 (717)
382 PF03178 CPSF_A: CPSF A subuni 82.1 80 0.0017 34.2 24.7 69 260-334 176-262 (321)
383 PF12657 TFIIIC_delta: Transcr 81.6 6 0.00013 38.7 7.9 75 22-97 7-121 (173)
384 PF00780 CNH: CNH domain; Int 79.6 85 0.0019 32.9 25.4 61 29-98 5-65 (275)
385 KOG2444 WD40 repeat protein [G 79.4 5.4 0.00012 40.0 6.6 74 267-348 69-143 (238)
386 PF11635 Med16: Mediator compl 78.6 1.4E+02 0.0031 36.7 20.0 71 261-332 264-345 (753)
387 KOG3630 Nuclear pore complex, 77.1 29 0.00063 42.8 12.6 105 208-324 155-260 (1405)
388 PHA02713 hypothetical protein; 77.0 45 0.00098 39.4 14.7 27 463-489 512-541 (557)
389 KOG1008 Uncharacterized conser 76.7 1.6 3.4E-05 49.7 2.3 109 260-379 106-223 (783)
390 PF08553 VID27: VID27 cytoplas 76.7 26 0.00057 42.5 12.5 87 270-362 544-630 (794)
391 PRK02888 nitrous-oxide reducta 76.6 15 0.00032 43.0 10.0 101 227-338 285-405 (635)
392 KOG2280 Vacuolar assembly/sort 76.3 1.6E+02 0.0034 35.2 17.7 157 142-346 94-255 (829)
393 PRK13684 Ycf48-like protein; P 76.0 1.2E+02 0.0025 33.3 16.7 116 259-388 174-294 (334)
394 KOG2280 Vacuolar assembly/sort 75.6 61 0.0013 38.4 14.3 51 279-340 65-115 (829)
395 PF10647 Gmad1: Lipoprotein Lp 74.0 74 0.0016 33.2 13.9 59 262-327 71-131 (253)
396 KOG1916 Nuclear protein, conta 73.8 1.3 2.7E-05 52.3 0.6 72 264-337 191-265 (1283)
397 PF03178 CPSF_A: CPSF A subuni 73.7 55 0.0012 35.5 13.5 111 452-571 88-202 (321)
398 PF14761 HPS3_N: Hermansky-Pud 73.6 71 0.0015 32.1 12.6 99 465-572 29-164 (215)
399 PF12234 Rav1p_C: RAVE protein 73.3 30 0.00064 40.9 11.5 103 226-336 37-155 (631)
400 PF14655 RAB3GAP2_N: Rab3 GTPa 72.6 9.8 0.00021 42.6 7.2 94 261-359 6-117 (415)
401 PF14781 BBS2_N: Ciliary BBSom 72.0 83 0.0018 29.1 12.9 113 263-387 5-131 (136)
402 KOG2395 Protein involved in va 71.3 18 0.00039 40.7 8.5 91 235-336 399-499 (644)
403 PHA03098 kelch-like protein; P 71.0 1.3E+02 0.0027 35.4 16.6 28 463-490 487-520 (534)
404 COG4590 ABC-type uncharacteriz 70.7 21 0.00045 39.3 8.7 30 69-99 222-251 (733)
405 PF07676 PD40: WD40-like Beta 70.0 8.1 0.00017 26.9 3.9 27 68-94 9-38 (39)
406 PF11715 Nup160: Nucleoporin N 69.7 19 0.00041 42.5 9.3 40 307-346 214-257 (547)
407 PF12234 Rav1p_C: RAVE protein 66.8 60 0.0013 38.4 12.2 68 22-96 32-103 (631)
408 PF07995 GSDH: Glucose / Sorbo 66.8 2E+02 0.0043 31.4 16.4 25 367-391 174-201 (331)
409 PF07569 Hira: TUP1-like enhan 66.6 25 0.00053 35.9 8.1 74 264-339 18-97 (219)
410 cd00216 PQQ_DH Dehydrogenases 65.9 2.6E+02 0.0056 32.4 25.0 76 268-347 61-138 (488)
411 PF07676 PD40: WD40-like Beta 65.6 13 0.00029 25.8 4.2 24 450-473 6-29 (39)
412 COG3386 Gluconolactonase [Carb 64.7 2.1E+02 0.0045 30.9 18.1 26 456-481 216-243 (307)
413 COG3490 Uncharacterized protei 64.0 2E+02 0.0043 30.3 17.0 61 262-335 285-346 (366)
414 TIGR02604 Piru_Ver_Nterm putat 63.7 1.9E+02 0.0041 32.1 15.3 52 309-362 73-135 (367)
415 KOG2377 Uncharacterized conser 63.1 20 0.00043 39.6 6.8 70 25-100 28-99 (657)
416 TIGR02604 Piru_Ver_Nterm putat 62.9 1.5E+02 0.0033 32.8 14.4 63 261-326 76-142 (367)
417 PF08728 CRT10: CRT10; InterP 61.8 3.2E+02 0.0069 33.0 16.8 72 259-336 165-245 (717)
418 PRK10115 protease 2; Provision 61.5 3.7E+02 0.0081 32.7 21.6 48 477-528 297-345 (686)
419 COG3386 Gluconolactonase [Carb 61.3 1.1E+02 0.0025 32.9 12.3 80 262-347 168-252 (307)
420 PF14870 PSII_BNR: Photosynthe 60.8 2.4E+02 0.0052 30.3 24.4 118 258-389 145-268 (302)
421 PLN00033 photosystem II stabil 60.6 2.5E+02 0.0054 31.5 15.3 112 262-389 244-363 (398)
422 KOG4460 Nuclear pore complex, 59.6 54 0.0012 37.1 9.4 77 25-101 109-202 (741)
423 PF14655 RAB3GAP2_N: Rab3 GTPa 58.4 37 0.0008 38.1 8.2 83 259-346 310-407 (415)
424 PHA02790 Kelch-like protein; P 57.2 3.6E+02 0.0078 31.2 16.6 64 461-528 405-469 (480)
425 KOG2395 Protein involved in va 57.0 92 0.002 35.4 10.6 103 254-362 373-483 (644)
426 KOG4441 Proteins containing BT 55.9 1.3E+02 0.0027 35.8 12.5 66 462-528 379-451 (571)
427 PF12341 DUF3639: Protein of u 55.8 18 0.00039 23.2 3.0 23 71-95 5-27 (27)
428 COG3391 Uncharacterized conser 54.9 3.4E+02 0.0074 30.2 22.3 77 261-346 211-292 (381)
429 KOG4659 Uncharacterized conser 54.2 5.9E+02 0.013 32.8 20.2 28 71-99 410-437 (1899)
430 KOG4499 Ca2+-binding protein R 53.9 2.5E+02 0.0054 28.7 12.0 93 262-359 163-262 (310)
431 TIGR03606 non_repeat_PQQ dehyd 52.8 1.9E+02 0.0042 33.0 12.8 21 305-327 145-165 (454)
432 TIGR03074 PQQ_membr_DH membran 52.7 5.3E+02 0.012 31.8 22.0 22 463-484 455-480 (764)
433 PHA02790 Kelch-like protein; P 52.3 3.8E+02 0.0082 31.0 15.7 27 462-488 445-477 (480)
434 PF07569 Hira: TUP1-like enhan 51.0 58 0.0013 33.2 7.7 33 539-571 8-40 (219)
435 PF14781 BBS2_N: Ciliary BBSom 50.7 2.1E+02 0.0046 26.5 11.1 76 447-528 42-124 (136)
436 KOG4460 Nuclear pore complex, 49.9 1.4E+02 0.003 34.0 10.5 34 309-342 167-203 (741)
437 PF05694 SBP56: 56kDa selenium 49.8 4.3E+02 0.0093 29.9 14.8 99 372-483 221-344 (461)
438 PF12768 Rax2: Cortical protei 48.1 1.8E+02 0.004 30.8 11.1 53 474-529 17-72 (281)
439 PF10214 Rrn6: RNA polymerase 47.1 5.2E+02 0.011 32.0 16.5 80 261-341 150-236 (765)
440 PHA02713 hypothetical protein; 45.8 5.7E+02 0.012 30.2 19.3 64 460-528 460-532 (557)
441 KOG4499 Ca2+-binding protein R 44.4 1.2E+02 0.0025 30.9 8.1 46 263-317 218-263 (310)
442 PHA03098 kelch-like protein; P 44.0 3.5E+02 0.0077 31.6 14.1 68 460-528 434-510 (534)
443 KOG1896 mRNA cleavage and poly 43.8 8.1E+02 0.018 31.3 20.5 33 1-38 939-972 (1366)
444 COG5290 IkappaB kinase complex 43.1 6.9E+02 0.015 30.3 18.4 71 262-340 252-327 (1243)
445 KOG4649 PQQ (pyrrolo-quinoline 42.6 4.1E+02 0.0089 27.6 27.9 19 142-160 63-81 (354)
446 PF14761 HPS3_N: Hermansky-Pud 41.9 1E+02 0.0023 31.0 7.5 51 269-328 29-80 (215)
447 PRK10115 protease 2; Provision 41.4 7.4E+02 0.016 30.2 21.4 67 262-339 132-209 (686)
448 PF07995 GSDH: Glucose / Sorbo 40.9 5.1E+02 0.011 28.2 30.9 60 267-331 270-329 (331)
449 TIGR02608 delta_60_rpt delta-6 40.8 1E+02 0.0022 23.7 5.6 47 224-282 6-52 (55)
450 PF11715 Nup160: Nucleoporin N 40.6 1.4E+02 0.003 35.3 9.9 35 262-297 220-258 (547)
451 PF13449 Phytase-like: Esteras 40.5 5E+02 0.011 28.2 13.5 68 258-327 86-166 (326)
452 KOG1916 Nuclear protein, conta 40.2 24 0.00051 42.3 3.2 74 138-248 191-265 (1283)
453 PRK13684 Ycf48-like protein; P 39.6 5.4E+02 0.012 28.1 22.6 35 453-488 260-295 (334)
454 COG3204 Uncharacterized protei 39.5 5E+02 0.011 27.6 18.5 73 22-100 88-161 (316)
455 KOG2006 WD40 repeat protein [G 36.0 29 0.00064 42.3 3.1 95 754-870 793-902 (1023)
456 PF01344 Kelch_1: Kelch motif; 35.6 73 0.0016 22.9 4.3 30 459-488 7-43 (47)
457 PF11090 DUF2833: Protein of u 34.2 43 0.00094 28.2 2.9 31 457-487 2-32 (86)
458 PF13964 Kelch_6: Kelch motif 33.3 56 0.0012 24.0 3.3 31 459-489 7-44 (50)
459 TIGR02276 beta_rpt_yvtn 40-res 33.3 1.1E+02 0.0023 21.2 4.7 30 317-346 1-31 (42)
460 KOG1900 Nuclear pore complex, 31.3 3.4E+02 0.0074 34.7 10.9 110 38-162 97-209 (1311)
461 PF05907 DUF866: Eukaryotic pr 29.5 1.5E+02 0.0033 28.5 6.3 49 455-504 105-155 (161)
462 KOG1983 Tomosyn and related SN 29.2 6.1E+02 0.013 32.4 13.1 41 447-487 229-270 (993)
463 PF11134 Phage_stabilise: Phag 28.9 8.8E+02 0.019 27.3 19.8 62 257-323 89-150 (469)
464 TIGR03606 non_repeat_PQQ dehyd 28.4 9.4E+02 0.02 27.5 13.6 61 257-319 30-90 (454)
465 COG5167 VID27 Protein involved 27.5 1.3E+02 0.0028 34.1 5.9 62 267-338 572-633 (776)
466 KOG1983 Tomosyn and related SN 27.0 8.4E+02 0.018 31.2 13.8 26 316-341 243-268 (993)
467 PF05694 SBP56: 56kDa selenium 25.5 1E+03 0.022 27.0 13.5 67 260-326 314-392 (461)
468 PF10395 Utp8: Utp8 family; I 25.1 1.3E+03 0.027 27.9 17.9 30 452-481 129-159 (670)
469 PF13418 Kelch_4: Galactose ox 24.1 95 0.0021 22.6 3.1 27 462-488 11-44 (49)
470 PF14727 PHTB1_N: PTHB1 N-term 23.5 9.7E+02 0.021 27.1 12.2 83 506-594 37-127 (418)
471 PF14870 PSII_BNR: Photosynthe 22.9 9.6E+02 0.021 25.8 27.2 249 207-488 15-268 (302)
472 PF07646 Kelch_2: Kelch motif; 22.8 1.3E+02 0.0029 22.0 3.7 32 457-488 5-45 (49)
473 PRK14131 N-acetylneuraminic ac 22.0 1.1E+03 0.024 26.0 19.5 55 460-515 276-353 (376)
474 PF01731 Arylesterase: Arylest 21.9 1.6E+02 0.0036 24.9 4.4 28 70-97 56-84 (86)
475 PF13925 Katanin_con80: con80 21.5 1.7E+02 0.0036 28.3 5.1 92 763-867 19-111 (164)
476 PF05096 Glu_cyclase_2: Glutam 20.2 1E+03 0.022 25.0 12.0 108 224-346 50-166 (264)
477 PF03088 Str_synth: Strictosid 20.2 2.5E+02 0.0054 24.0 5.2 42 276-327 35-76 (89)
478 KOG4659 Uncharacterized conser 20.0 2E+03 0.044 28.4 19.0 21 71-91 596-616 (1899)
No 1
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-72 Score=630.58 Aligned_cols=584 Identities=34% Similarity=0.499 Sum_probs=451.5
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 002753 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (884)
Q Consensus 256 h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~ 335 (884)
-++++|++++..+.++|+|...|.+.+|+.+.............+ +++.++.-+.|.|+++.++.++..|...+|+
T Consensus 148 ~~DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~----~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS 223 (1023)
T KOG2006|consen 148 GGDAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDD----TLTVPDNNSSWRPDQNGFAVTWEKGFLAFWS 223 (1023)
T ss_pred cccceeeeccchhhhheecccccceeehhhhhhccceeeecccCc----cccccccccCcCCccceeeeeecccceEEec
Confidence 468999999999999999999999999998763232222222122 2455888899999999999999999999999
Q ss_pred ccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCce
Q 002753 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTY 415 (884)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~ 415 (884)
..|+..+.+.......+..+..|+|.-......-.+......|...+..++.........+..+.. +.... ..++..
T Consensus 224 ~~g~~~ms~v~~~~~ts~~~~~f~~~~~l~e~~~~s~~~~~q~~e~~~~L~~~~~~~~~~~~~~~s-~sc~~--~S~~~~ 300 (1023)
T KOG2006|consen 224 NQGNILMLPVKKLELTSKVVLKFNPLIIMKGEPTFSKVGAIQWEEVGIVLFPHGEQILTISDFKVS-KSCLV--ESKTIV 300 (1023)
T ss_pred ccccccccchhhhhccchhhhccCcceeeecccccCccchhhccceeeeeecccccccchhheeec-ccccc--ccccee
Confidence 999988776654333445555666654344444555567778887777776554332222211111 11110 122333
Q ss_pred eeeeeecCCeEEEEecCC---CCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEEEecCcc
Q 002753 416 ARQVIYGEDRLLVVQSED---TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDIT 492 (884)
Q Consensus 416 ~w~l~~~~~~~~i~~~~~---~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~iiwd~~s~~w~~f~~~~ 492 (884)
......++.++.+....+ .+...|.++++|.+|...+|||+.++.++||.++|+||.-|.++|+..+++||.|+++.
T Consensus 301 ~~~~l~~d~~~l~~~~~~~s~~~~~~w~~~~~P~~y~ssnwpiry~s~~~dg~~lavAgl~gla~y~~~~~~Wk~f~~~s 380 (1023)
T KOG2006|consen 301 CRAQLMGDSHDLVSKATDVSITDIEKWDHLALPLTYTSSNWPIRYVSIDYDGKHLAVAGLHGLARYSLSSKRWKLFGDES 380 (1023)
T ss_pred echhhccchhhhhhhhccccccchhhhheeecccccccccCceeEEeecCCccEEEEeecccceEEEeecceeecCCccc
Confidence 333444455444444333 44558999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeEEEE-EEEeCCEEEEEEEecCCCeEEEEEeeCC-CCCCcceEEEEecCCccEEEEccCCEEEEEEcCCeEEEEEE
Q 002753 493 QEQKIQSKG-LLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 570 (884)
Q Consensus 493 ~e~~~~v~~-~~W~~~~lv~~~~~~~~~~~elr~y~~~-~l~~~~~l~~~~~~~~~~~~~~~~~~llv~~~~~~i~i~~~ 570 (884)
||+.+.|.| +.|+++++++||+.+.+..+++++|+++ ++|++. .+..........+.+.++.++|++.++.+++|++
T Consensus 381 qEq~i~vtg~liW~~~f~v~~~~~~~~~~~~L~fy~~~~~~dn~~-a~k~~~~~~~~d~v~~~~~livitad~~~~~~~~ 459 (1023)
T KOG2006|consen 381 QEQNINVTGGLIWWDDFVVHGCVEEGNRTFELYFYPRDYNLDNNL-AHKSAASAKVSDLVCVDYSLIVITADGKYQHWEL 459 (1023)
T ss_pred hhhceecceeeEEecceEEEEEEeecCceeeeEecccccccchhh-ccchhhhhhhhheeeecceeEEEEecceEEEEEe
Confidence 999999984 9999999999999999999999999998 676653 3443333334455677888888999999999988
Q ss_pred EEecccCCCCCCceEEEEEEEEeeecccCCCceEEEccCCCcccccccCCCCCCccccccCCccEEEEEECCEEEEEecC
Q 002753 571 KLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLD 650 (884)
Q Consensus 571 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~l~~~ 650 (884)
..+ ....+.+..+++++++.+++||++|+++|++.+++.-... -+|.++ ..+....+|.+.++...
T Consensus 460 ~~~------s~t~l~~~~~~~~~~~~i~thP~~ivs~t~t~~~l~~i~~-~~l~~~-------~~~~~~~~n~i~~l~~~ 525 (1023)
T KOG2006|consen 460 WRN------SQTQLDLENVTEVSIVLINTHPACIVSLTVTSPSLANIGN-DNLQFY-------KSITVTFNNLIGRLIIN 525 (1023)
T ss_pred ccc------hhhccccceeeEEEEEeecCCCcEEEEeeccCccccccCc-cchhHh-------hhhhhhhcchhheeehh
Confidence 643 2456788899999999999999999999999886321111 122222 22344456666666542
Q ss_pred CC-------ceeeeccceeEEEEcCCCCccccCccceeeEEEECCCC-----cEEeccC--------------CCCCCCC
Q 002753 651 DG-------RERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRG-----MQVWYPS--------------PGVDPYK 704 (884)
Q Consensus 651 ~~-------~~~~l~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~vw~~~--------------~~~~~~~ 704 (884)
.. .+..+|++||++|+.+.. .. ..+.+..|..+|..| |+.|.+. .+.+...
T Consensus 526 ~~~~~~~~~~~~~la~~Ve~~~~~ss~-~~--~~~~d~~Wl~~g~~~~~~~~~~g~~~~l~~~~~~~~g~~~~~~~~~~~ 602 (1023)
T KOG2006|consen 526 SSLRDGALYQENKLASLVENFWLNSSF-ED--QQVLDLHWLGDGANGCHMKNMDGCPNHLCLALWLSEGNVWDLVMDAYR 602 (1023)
T ss_pred hhccchhhhhhhhhhhhHHHeecCcHH-hh--hhhhhceeeccCCCccccccccCCccccccceeecccchhhccccccc
Confidence 21 467899999999988322 22 234566788888888 7766443 2345666
Q ss_pred cccccccCcccccccccccceeccCCcEEEEEeeeeeccc-----CccccccccCCcceeeHHHHHH--HHHHcCCHHHH
Q 002753 705 QEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSA-----CTEFPCFEPTPQAQTILHCLLR--HLLQRDKIEEA 777 (884)
Q Consensus 705 ~~~~~~~~~~l~~~~~~yPl~i~~~~~i~~G~~~~~~~~~-----~~~~~~~~~~~~~~~~L~~il~--~ll~~~~~~~a 777 (884)
.++|..+++|++|+++.|||.++++++++.|++|+..... +..+++.-..++|++|||.+++ |+|+||.+++|
T Consensus 603 ~~sF~~k~~ml~f~l~~Ypl~~l~~~~~~~gv~~~~~l~asa~~~~~~~~f~v~~~~h~~~l~~i~~l~q~lkrnl~~~a 682 (1023)
T KOG2006|consen 603 VPSFLSKRIMLPFTLNIYPLVLLKNVNLVLGVEQEDALLASAEIILFTLTFDVQERLHQIYLHIILHLYQLLKRNLGEDA 682 (1023)
T ss_pred CchhhhhccccccchhhceeeeecccceeeeccchhhhhhhccccccccchHHhhhhhhhHHHHHHHHHHHHHhhccHHH
Confidence 7889999999999999999999999999999999865432 3355666678899999999999 99999999999
Q ss_pred HHHHHHcCCCCCchhhHHHHHHHhhhcccccccccccccCCcccccchhhHHHHHHHHHhCchhhhhhhhccccccccch
Q 002753 778 LRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHW 857 (884)
Q Consensus 778 ~~~a~~~~~l~~f~h~LE~lLh~vl~~e~~~~~~~~~~~~~~~~~~~~~~l~~v~~~i~~~~~~l~ivv~c~RKtE~~~W 857 (884)
+.+|+.|..+|||+|+||+|||.|||+|+++++| +|+ ++||+++.||++||+|+++|||||||||.++|
T Consensus 683 Lllaq~~a~~p~f~h~le~ll~~Vle~e~ts~~p------~~d-----~~l~~i~d~I~eFp~fl~~vv~caRKTe~~lW 751 (1023)
T KOG2006|consen 683 LLLAQECAILPHFTHALELLLHFVLEEEATSSEP------IPD-----KLLPKIIDFIREFPEFLKTVVNCARKTEAALW 751 (1023)
T ss_pred HHhHHHHHhcccchHHHHHHHHHHHHHhhcCCCC------ccc-----hhHHHHHHHHHhhhHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999998865 676 79999999999999999999999999999999
Q ss_pred hHhHhhcCCchhhHHHhh
Q 002753 858 ADLFSAAGRSTEYTFYLH 875 (884)
Q Consensus 858 ~~lF~~~g~p~~lf~~~~ 875 (884)
++||+++|.|++||++|-
T Consensus 752 ~~lF~~~G~PkdLfe~Cl 769 (1023)
T KOG2006|consen 752 PDLFSAVGIPKDLFEECL 769 (1023)
T ss_pred HHHHHhcCCcHHHHHHHh
Confidence 999999999999999984
No 2
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=100.00 E-value=6.5e-51 Score=415.99 Aligned_cols=185 Identities=35% Similarity=0.550 Sum_probs=162.6
Q ss_pred eeeEEEECC-CCcEEeccCCCCC--CCCcccccccCcccccccccccceeccCCcEEEEEeeeeecccCccccccccCCc
Q 002753 680 EVSWLDYGY-RGMQVWYPSPGVD--PYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQ 756 (884)
Q Consensus 680 ~~~~~~~~~-~~~~vw~~~~~~~--~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~ 756 (884)
++++|+|+| +||+||+|+.+.. ....+.+.+ ..+++|.|||||+|++++|+++|+++++..+++.+++++++.++
T Consensus 3 ~~~lW~~~g~~~~~vW~~~~~~~~~~~~~~~~~~--~~i~l~~d~yPlsil~~~gii~Gv~~~~~~~~~~~~~~~~~~~~ 80 (258)
T PF07064_consen 3 RDSLWLFCGAQGMKVWLPVFPVSPASSDSHSFLS--KRIMLPSDFYPLSILSEKGIILGVEQDTSQRRSSSFPFFKFEIK 80 (258)
T ss_pred ccceehhcCcccceeecccccccccccccccccc--cCccCCccccceEEEcCCcEEEEEEEEeeccCCcCccceEeecC
Confidence 345666555 9999999998762 223333433 44555599999999999999999999999998999999999999
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHHHcCCCCCchhhHHHHHHHhhhcccccccccccccCCcccccchhhHHHHHHHHH
Q 002753 757 AQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIR 836 (884)
Q Consensus 757 ~~~~L~~il~~ll~~~~~~~a~~~a~~~~~l~~f~h~LE~lLh~vl~~e~~~~~~~~~~~~~~~~~~~~~~l~~v~~~i~ 836 (884)
+|+|||+|||++|+++++.+|++||++|++|+||+||||+|||+|||+|++++.++ + +++++||+|++||+
T Consensus 81 ~~l~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~----~-----~~~~~L~~v~~ll~ 151 (258)
T PF07064_consen 81 TQLFLHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDS----P-----IPDALLPRVISLLQ 151 (258)
T ss_pred ceechHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccc----c-----chHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999865321 1 24599999999999
Q ss_pred hCchhhhhhhhccccccccchhHhHhhcCCchhhHHHhh
Q 002753 837 NFPEYLNVVVSVARKTDGRHWADLFSAAGRSTEYTFYLH 875 (884)
Q Consensus 837 ~~~~~l~ivv~c~RKtE~~~W~~lF~~~g~p~~lf~~~~ 875 (884)
+||+||+||||||||||+++|++||+++|+|++||++|=
T Consensus 152 ~f~~~l~Ivv~C~RKtE~~~W~~LF~~lg~P~dLf~~cl 190 (258)
T PF07064_consen 152 EFPEYLEIVVNCARKTEVRYWPYLFDYLGSPRDLFEECL 190 (258)
T ss_pred cCcchHHHHHHHHHhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999983
No 3
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=306.12 Aligned_cols=408 Identities=18% Similarity=0.230 Sum_probs=286.2
Q ss_pred CceEEEEEecCeEEEEEccCeEEEEecCCceeE--EEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002753 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVR--LGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (884)
Q Consensus 21 ~~~vv~fspdg~lla~~t~~~v~IW~~~~~~~~--l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~ 98 (884)
....|.|||||++||++..+-+.||... .... ..-+.+...-+.++..++++.||-|++.|++++.|-..++|.+..
T Consensus 98 ~v~~i~fSPng~~fav~~gn~lqiw~~P-~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~ 176 (893)
T KOG0291|consen 98 GVGAIKFSPNGKFFAVGCGNLLQIWHAP-GEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDG 176 (893)
T ss_pred ccceEEECCCCcEEEEEecceeEEEecC-cchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecc
Confidence 4566899999999999999999999983 2221 333444444455778899999999999999999999999999975
Q ss_pred cCceeecCCCCCCCceeeeeeeeeecccccccccee-EEEE-eecCCeEEEEecCCcEEEEecCCccc---cc-------
Q 002753 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS-VSNI-VSDNKHMLLGLSDGSLYSISWKGEFY---GA------- 166 (884)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-v~~i-~~~~~~llv~~~~g~i~~~~w~~~~~---~~------- 166 (884)
..+..+ ..+.++.+. |.|+ ..+...++.-++||.+..|..+.... ..
T Consensus 177 ~k~~~~---------------------~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~ 235 (893)
T KOG0291|consen 177 NKNLFT---------------------YALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGS 235 (893)
T ss_pred ccccce---------------------EeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccc
Confidence 443111 112233333 3343 45566788888999888776551000 00
Q ss_pred --------eeeecc------------CCCCccceeecccCCCC-cceecCCCccccccccCCCccEEEEEEcCCcceEEE
Q 002753 167 --------FELVHS------------SNDSSVAALSHHFPSNG-LASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (884)
Q Consensus 167 --------~~l~~~------------~~~~~~i~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (884)
-+-+.. .....++....|..... +++...++... ..-.+.-.-|.++..+......+.
T Consensus 236 ~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~-LyelP~f~lih~LSis~~~I~t~~ 314 (893)
T KOG0291|consen 236 DDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG-LYELPDFNLIHSLSISDQKILTVS 314 (893)
T ss_pred ccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE-EEecCCceEEEEeecccceeeEEE
Confidence 000000 00001111111111111 11111111100 000111122333333333334455
Q ss_pred EEcCCcEEEEeecC-Cccceeeecccc---cccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccC
Q 002753 226 LYSNGQLMSCSVSK-KGLKLAEFIKID---KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (884)
Q Consensus 226 ~s~dG~~~~~~~~d-~~i~~w~~~~~~---~~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~ 300 (884)
++..|..++.++.. +.+-+|+..... +.++|...+. +++||||++||+|+.||+|+|||... +-+..++..
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFte--- 390 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTE--- 390 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEecc---
Confidence 66678777776654 445566655432 2278888776 99999999999999999999999988 789999998
Q ss_pred CCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc----eeE
Q 002753 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMM 376 (884)
Q Consensus 301 ~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~----~i~ 376 (884)
|+..|+.+.|+.+|+.+.+++-||+|+.||+...+.+.|+.....-..++++..|.| +.+..|. .+.
T Consensus 391 -----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG----elV~AG~~d~F~If 461 (893)
T KOG0291|consen 391 -----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG----ELVCAGAQDSFEIF 461 (893)
T ss_pred -----CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC----CEEEeeccceEEEE
Confidence 999999999999999999999999999999999999999987645567888999988 7777776 899
Q ss_pred EEecCCceEEEEecCCcceEEE--Eee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCC
Q 002753 377 QWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (884)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~ 453 (884)
+|+..+++++-++.||.++|.. |++ +..++++|+|.|+++|++......+ +...+..
T Consensus 462 vWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v--------------------Etl~i~s 521 (893)
T KOG0291|consen 462 VWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV--------------------ETLEIRS 521 (893)
T ss_pred EEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee--------------------eeEeecc
Confidence 9999999999999999999965 555 8899999999999999988765421 2334455
Q ss_pred ceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002753 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 454 ~I~~va~S~dG~~lavag~dg~i-iwd~~s~~ 484 (884)
.+..++|+|||+.||+++-||.+ +||++.+.
T Consensus 522 dvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 522 DVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred ceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 68999999999999999999999 99997653
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-35 Score=294.29 Aligned_cols=326 Identities=14% Similarity=0.130 Sum_probs=270.8
Q ss_pred EEeeChHhhhhc-cceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeecccccccccee
Q 002753 56 KYKRDSESVQRE-GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS 134 (884)
Q Consensus 56 ~~~r~~~sl~~~-G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 134 (884)
...|...++..| +.+.++.|||||+.||+++.|.++++||+.+...... .+++..-
T Consensus 103 pvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t-----------------------~KgH~~W 159 (480)
T KOG0271|consen 103 PVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT-----------------------CKGHKNW 159 (480)
T ss_pred ccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee-----------------------ecCCccE
Confidence 345666777766 5578999999999999999999999999976543222 2445455
Q ss_pred EEEE--eecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEE
Q 002753 135 VSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAII 212 (884)
Q Consensus 135 v~~i--~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 212 (884)
|.|+ ++|++.|+.|+.+|.|.+ |+.+...... ..+.+|+..|+
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~l--wdpktg~~~g---------------------------------~~l~gH~K~It 204 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRL--WDPKTGQQIG---------------------------------RALRGHKKWIT 204 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEE--ecCCCCCccc---------------------------------ccccCccccee
Confidence 6555 678899999999999987 6666544321 23567788899
Q ss_pred EEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCC
Q 002753 213 WLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES 288 (884)
Q Consensus 213 ~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~ 288 (884)
+++|.|.- ..|.++.+++++.|+++++||...+.+. .+|+.+|+ +.+-- ..+|++|+.|++|++|+..+
T Consensus 205 ~Lawep~h-----l~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~d- 277 (480)
T KOG0271|consen 205 ALAWEPLH-----LVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALD- 277 (480)
T ss_pred EEeecccc-----cCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEecCCCceEEEEEccc-
Confidence 99998743 4688999999999999999998876554 79998876 77743 35999999999999999998
Q ss_pred CcceEEEeeccCCCCCCCCcCeEEEEECC-----------CCC-------------------------EEEEEEcCCcEE
Q 002753 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-----------DNS-------------------------AFAVGWKSRGLT 332 (884)
Q Consensus 289 ~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-----------dg~-------------------------~Lasg~~dg~v~ 332 (884)
+.+.+.+++ |...|+.++.|. -|+ .|++|++|.++.
T Consensus 278 G~~~r~lkG--------HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlf 349 (480)
T KOG0271|consen 278 GKLCRELKG--------HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLF 349 (480)
T ss_pred hhHHHhhcc--------cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEE
Confidence 899999999 999999998882 233 599999999999
Q ss_pred EEeccCC-eeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee---ccee
Q 002753 333 VWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCC 405 (884)
Q Consensus 333 vW~~~~~-~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~ 405 (884)
+|+.+.. +.+....+| ...|+.+.||||+ ..+++++ ++++|+..+++.+..++||-..|+++.+ .+.+
T Consensus 350 lW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~----r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLl 424 (480)
T KOG0271|consen 350 LWNPFKSKKPITRMTGH-QALVNHVSFSPDG----RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLL 424 (480)
T ss_pred Eecccccccchhhhhch-hhheeeEEECCCc----cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEE
Confidence 9998654 467777787 8899999999999 9999998 9999999999999999999999998888 5689
Q ss_pred ecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEE
Q 002753 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (884)
Q Consensus 406 ~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd 479 (884)
+++|.|.|+++|++...+- ...+-+|...|.++.|||||+.+|+||+|..+ +|.
T Consensus 425 VS~SkDsTLKvw~V~tkKl--------------------~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKKL--------------------KQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEcCCCceEEEEEeeeeee--------------------cccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999876543 44567899999999999999999999999998 884
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=277.58 Aligned_cols=316 Identities=14% Similarity=0.211 Sum_probs=246.7
Q ss_pred CCceE--EEEEecCeEEEEE-ccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEE
Q 002753 20 SSQQI--IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (884)
Q Consensus 20 ~~~~v--v~fspdg~lla~~-t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l 96 (884)
+.++| ++|||+|+.||++ +|.++++||.. +..++...++ +..-+.+++|||||+.||+++.+|.|++|+.
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~-TeTp~~t~Kg------H~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLD-TETPLFTCKG------HKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccC-CCCcceeecC------CccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 34555 6799999999999 57899999996 6666665543 2355789999999999999999999999998
Q ss_pred EecCce-eecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCC
Q 002753 97 QITEKS-IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (884)
Q Consensus 97 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~ 175 (884)
+.+... ..+.+|.. .+.++.+.+-+. .+....++.+++||.+++| +.......
T Consensus 187 ktg~~~g~~l~gH~K---~It~Lawep~hl-------------~p~~r~las~skDg~vrIW--d~~~~~~~-------- 240 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKK---WITALAWEPLHL-------------VPPCRRLASSSKDGSVRIW--DTKLGTCV-------- 240 (480)
T ss_pred CCCCcccccccCccc---ceeEEeeccccc-------------CCCccceecccCCCCEEEE--EccCceEE--------
Confidence 765431 11222221 122222222111 1223467888899999885 43332211
Q ss_pred CccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccccc---
Q 002753 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--- 252 (884)
Q Consensus 176 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~--- 252 (884)
..+.+|...|+++.|- - ..++.+++.|.++++|+...+..
T Consensus 241 --------------------------~~lsgHT~~VTCvrwG----------G-~gliySgS~DrtIkvw~a~dG~~~r~ 283 (480)
T KOG0271|consen 241 --------------------------RTLSGHTASVTCVRWG----------G-EGLIYSGSQDRTIKVWRALDGKLCRE 283 (480)
T ss_pred --------------------------EEeccCccceEEEEEc----------C-CceEEecCCCceEEEEEccchhHHHh
Confidence 2345777888888862 1 23677889999999999887644
Q ss_pred ccCCCCcEE-EEEc-----------CCCC-------------------------EEEEEecCCeEEEEEccCCCcceEEE
Q 002753 253 ELGSGDAVC-ASIA-----------PEQQ-------------------------ILAVGTRRGVVELYDLAESASLIRTV 295 (884)
Q Consensus 253 ~~~h~~~v~-va~s-----------p~~~-------------------------~la~g~~dg~v~lw~~~~~~~~~~~l 295 (884)
+.||...++ ++.| |.++ .+++|+.|+++.+|+-....+++...
T Consensus 284 lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm 363 (480)
T KOG0271|consen 284 LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM 363 (480)
T ss_pred hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhh
Confidence 378888887 7666 4344 49999999999999987645567677
Q ss_pred eeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--
Q 002753 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (884)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~-- 373 (884)
.+ |..-|+.+.|||||+++|+++-|+.|++|+..+|+.+.++++| -..|..++++.|. ..++||+
T Consensus 364 tg--------Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH-v~~VYqvawsaDs----RLlVS~SkD 430 (480)
T KOG0271|consen 364 TG--------HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH-VAAVYQVAWSADS----RLLVSGSKD 430 (480)
T ss_pred hc--------hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc-cceeEEEEeccCc----cEEEEcCCC
Confidence 77 9999999999999999999999999999999999999999999 7899999999998 8899997
Q ss_pred -eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeee
Q 002753 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQ 418 (884)
Q Consensus 374 -~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~ 418 (884)
+.++|+..+.++..-+.||.+.|+++++ |+.+++|+.|..+++|.
T Consensus 431 sTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 431 STLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 8999999999999999999999988877 88999999999999884
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=2.2e-31 Score=272.63 Aligned_cols=275 Identities=14% Similarity=0.142 Sum_probs=225.9
Q ss_pred ccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEE--Eeec--C
Q 002753 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSD--N 142 (884)
Q Consensus 67 ~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~--i~~~--~ 142 (884)
.+++..+.||+||+.||+++-+|.+++|+.........+.+|. ..+.+ +.+. +
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~-----------------------~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT-----------------------SRVGAAVFHPVDSD 231 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc-----------------------cceeeEEEccCCCc
Confidence 4678889999999999999999999999987554333343333 22222 2333 4
Q ss_pred CeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcce
Q 002753 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (884)
Q Consensus 143 ~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (884)
..++.++.||.+.+|..+.+.. . ..+.+|...|..+.
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~--l----------------------------------~~l~gH~~RVs~Va------- 268 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETP--L----------------------------------QDLEGHLARVSRVA------- 268 (459)
T ss_pred cceeeeccCCceeeeccCCCcc--h----------------------------------hhhhcchhhheeee-------
Confidence 5788899999999976655421 1 12344555566555
Q ss_pred EEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeec
Q 002753 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (884)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~ 298 (884)
|.|+|+++++++-|.+-++||..+...+ .||...+. ++|+|||.++++|+.|..-||||+++ +.++..+.+
T Consensus 269 ---fHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~g- 343 (459)
T KOG0272|consen 269 ---FHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAG- 343 (459)
T ss_pred ---ecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEecc-
Confidence 5799999999999999999999987665 78999998 99999999999999999999999999 899999999
Q ss_pred cCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEE
Q 002753 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (884)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W 378 (884)
|..+|.+|+|||+|+.||+|+.|++++|||+....++.++.+| .+-|+.+.|+|..
T Consensus 344 -------H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH-~nlVS~Vk~~p~~---------------- 399 (459)
T KOG0272|consen 344 -------HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH-SNLVSQVKYSPQE---------------- 399 (459)
T ss_pred -------cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc-cchhhheEecccC----------------
Confidence 9999999999999999999999999999999999999999888 7778888887743
Q ss_pred ecCCceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEE
Q 002753 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (884)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~v 458 (884)
+..++|+++|+++++|.-.... +..++.||.+.|.++
T Consensus 400 -----------------------g~fL~TasyD~t~kiWs~~~~~--------------------~~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 400 -----------------------GYFLVTASYDNTVKIWSTRTWS--------------------PLKSLAGHEGKVISL 436 (459)
T ss_pred -----------------------CeEEEEcccCcceeeecCCCcc--------------------cchhhcCCccceEEE
Confidence 3456888999999999843332 246788999999999
Q ss_pred EEccCCCEEEEEeCCceE-EEE
Q 002753 459 AASKDGMFLAVAGLHGLI-LYD 479 (884)
Q Consensus 459 a~S~dG~~lavag~dg~i-iwd 479 (884)
.+|+||+++++++.|.++ +|.
T Consensus 437 Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 437 DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EeccCCceEEEeccCceeeecc
Confidence 999999999999999999 985
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=7.1e-27 Score=245.38 Aligned_cols=445 Identities=12% Similarity=0.161 Sum_probs=275.1
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecC----cEEEEEE
Q 002753 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHIFK 95 (884)
Q Consensus 21 ~~~vv~fspdg~lla~~t-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~----g~l~l~~ 95 (884)
..-|..|||.|-++|++. .+.|+||+.. ....+.+.+-..- -|++.++.|++||++|++.... |.+.+||
T Consensus 61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt-~~~hiLKnef~v~----aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D 135 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGDVSGKVRIWDTT-QKEHILKNEFQVL----AGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD 135 (603)
T ss_pred eeEEEEeCCCceEEeecCCcCcEEEEecc-Ccceeeeeeeeec----ccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence 456678999999999994 6799999995 3222332222221 2999999999999998887643 2344444
Q ss_pred EEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEE--Eeec-CCeEEEEecCCcEEEEecCCccccceeeecc
Q 002753 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (884)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~--i~~~-~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~ 172 (884)
-.++... + .++...+.+ |-+. ..+++.+++|+.+.++. +. ++..+
T Consensus 136 SG~SvGe--i-----------------------~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe--GP---PFKFk-- 183 (603)
T KOG0318|consen 136 SGNSVGE--I-----------------------TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE--GP---PFKFK-- 183 (603)
T ss_pred CCCccce--e-----------------------eccceeEeeeeccCCCceEEEeccCCCeEEEee--CC---Ceeee--
Confidence 3221111 1 111112222 2222 35778888899988753 31 22110
Q ss_pred CCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccccc
Q 002753 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK 252 (884)
Q Consensus 173 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~ 252 (884)
.....|...|.++.| +|||..+++.+.|+++.++|+.++++
T Consensus 184 -----------------------------~s~r~HskFV~~VRy----------sPDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 184 -----------------------------SSFREHSKFVNCVRY----------SPDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred -----------------------------ecccccccceeeEEE----------CCCCCeEEEecCCccEEEEcCCCccE
Confidence 112345556777776 67777777777777777788877765
Q ss_pred c------cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeecc----------C---------------
Q 002753 253 E------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD----------W--------------- 300 (884)
Q Consensus 253 ~------~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~----------~--------------- 300 (884)
. .+|...+. ++|+||++.+++++.|.+++|||+.+ .++++++.... |
T Consensus 225 vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in 303 (603)
T KOG0318|consen 225 VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN 303 (603)
T ss_pred EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence 4 47888998 99999999999999999999999987 44444332110 0
Q ss_pred ----------CCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe-ccccccceeeeeecCCCCCCccce
Q 002753 301 ----------GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI-RQISLSSISSPIVKPNQDCKYEPL 369 (884)
Q Consensus 301 ----------~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl-~~~~~~~v~s~~~s~~~~~~~~~l 369 (884)
..-.+|...|++++.+|||++|.+|+.||.|.-|+...+..-.-. +.| .+.|..++.+..+ +.+
T Consensus 304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h-~nqI~~~~~~~~~----~~~ 378 (603)
T KOG0318|consen 304 YLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH-TNQIKGMAASESG----ELF 378 (603)
T ss_pred EecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc-cceEEEEeecCCC----cEE
Confidence 012279999999999999999999999999999999776543222 223 4455555444322 222
Q ss_pred eecc--eeEEEec------------------------CCceEEEE-------ecC----------CcceEEEEee-ccee
Q 002753 370 MSGT--SMMQWDE------------------------YGYRLYAI-------EEG----------SSERVLIFSF-GKCC 405 (884)
Q Consensus 370 ~sg~--~i~~W~~------------------------~~~~l~~~-------~~~----------~~~~v~~~~~-~~~~ 405 (884)
..|- +++.-+. .++-.+.+ +++ ......++++ ++.+
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence 2211 1111111 11111111 110 1112244444 4555
Q ss_pred ecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002753 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 406 ~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~ 484 (884)
+.|+.|+.++++.+..+... --.....|.++|+++++||||.|||++-..+.+ +||++++.
T Consensus 459 aVGG~Dgkvhvysl~g~~l~------------------ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELK------------------EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred EEecccceEEEEEecCCccc------------------ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc
Confidence 66677777776665443321 012566899999999999999999999999999 99999876
Q ss_pred EEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEEecCCccEEEEccCC-EEEEEEcCC
Q 002753 485 WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYED-YILVTYRPF 563 (884)
Q Consensus 485 w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~~l~~~~~l~~~~~~~~~~~~~~~~~-~llv~~~~~ 563 (884)
-++-.-.. +.-.|.+++|.++...++.. +-+..+.+|+.++.... +..+-.++..+-.+.-.++ .++-+..|.
T Consensus 521 ~~~~~w~F--HtakI~~~aWsP~n~~vATG---SlDt~Viiysv~kP~~~-i~iknAH~~gVn~v~wlde~tvvSsG~Da 594 (603)
T KOG0318|consen 521 VKTNRWAF--HTAKINCVAWSPNNKLVATG---SLDTNVIIYSVKKPAKH-IIIKNAHLGGVNSVAWLDESTVVSSGQDA 594 (603)
T ss_pred eecceeee--eeeeEEEEEeCCCceEEEec---cccceEEEEEccChhhh-eEeccccccCceeEEEecCceEEeccCcc
Confidence 43210001 22347799999887766532 45577889998633332 3332223332333333334 444466788
Q ss_pred eEEEEEEE
Q 002753 564 DVHIFHVK 571 (884)
Q Consensus 564 ~i~i~~~~ 571 (884)
.|++|++.
T Consensus 595 ~iK~W~v~ 602 (603)
T KOG0318|consen 595 NIKVWNVT 602 (603)
T ss_pred eeEEeccc
Confidence 99999864
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.4e-26 Score=249.23 Aligned_cols=451 Identities=14% Similarity=0.148 Sum_probs=327.0
Q ss_pred ceEEEEEecCeEEEEEccC-eEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 002753 22 QQIIYFKVNNGLLLIASPC-HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (884)
Q Consensus 22 ~~vv~fspdg~lla~~t~~-~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~ 100 (884)
-..++.||||.+|.++.+. ++.+-+. ..+..+..+. - .+++-+++|||||+.+|++.++ .+.+|......
T Consensus 58 I~~ialSp~g~lllavdE~g~~~lvs~-~~r~Vlh~f~-f------k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~ 128 (893)
T KOG0291|consen 58 ITRIALSPDGTLLLAVDERGRALLVSL-LSRSVLHRFN-F------KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEI 128 (893)
T ss_pred eEEEEeCCCceEEEEEcCCCcEEEEec-ccceeeEEEe-e------cCccceEEECCCCcEEEEEecc-eeEEEecCcch
Confidence 4458899999999988765 4444444 2333332221 1 2455699999999999998754 79999985332
Q ss_pred ceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEe--ecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCcc
Q 002753 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (884)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~--~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~ 178 (884)
...+. .+.......++...++++. .|...+++|+.|-..+++.-++..+-.
T Consensus 129 ~~~~~---------------pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~------------ 181 (893)
T KOG0291|consen 129 KNEFN---------------PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF------------ 181 (893)
T ss_pred hcccC---------------cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc------------
Confidence 21110 0111122244455566664 345667777888888887665444211
Q ss_pred ceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeee-----------
Q 002753 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF----------- 247 (884)
Q Consensus 179 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~----------- 247 (884)
...+.+|+.+|...-|.........++.||.+++...+......+..
T Consensus 182 ----------------------~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~ 239 (893)
T KOG0291|consen 182 ----------------------TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEE 239 (893)
T ss_pred ----------------------eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccc
Confidence 13346778888888887777777888899998888776222222211
Q ss_pred --ccccc-------------c--cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCe
Q 002753 248 --IKIDK-------------E--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV 310 (884)
Q Consensus 248 --~~~~~-------------~--~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V 310 (884)
..++. + ....+.++++|++.-.+||+|-.+|...+|.+.+ -.+++.+.. ...+|
T Consensus 240 ~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSi--------s~~~I 310 (893)
T KOG0291|consen 240 MDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSI--------SDQKI 310 (893)
T ss_pred ccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeec--------cccee
Confidence 00000 0 1123455699999999999999999999999988 788888887 55789
Q ss_pred EEEEECCCCCEEEEEEcC-CcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEE
Q 002753 311 SCIAWTPDNSAFAVGWKS-RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLY 386 (884)
Q Consensus 311 ~~l~~spdg~~Lasg~~d-g~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~ 386 (884)
..++|+..|.+||.|+.. |.+-||+.....-+-..++| ...+++++++||| +.+++|. ++++|+...+-|+
T Consensus 311 ~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH-~~~i~~l~YSpDg----q~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH-SDRITSLAYSPDG----QLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred eEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc-ccceeeEEECCCC----cEEEeccCCCcEEEEeccCceEE
Confidence 999999999999999875 68999999888777777777 7899999999999 9999997 9999999999999
Q ss_pred EEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccC
Q 002753 387 AIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD 463 (884)
Q Consensus 387 ~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~d 463 (884)
.+...|...+..+.| ++.+++.|.||+++.||+....+. ++...|.. -...|+|..|.
T Consensus 386 vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf--------------RTft~P~p-----~QfscvavD~s 446 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF--------------RTFTSPEP-----IQFSCVAVDPS 446 (893)
T ss_pred EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee--------------eeecCCCc-----eeeeEEEEcCC
Confidence 999999999988877 889999999999999998766552 22222321 12568899999
Q ss_pred CCEEEEEeCCceE--EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEEe
Q 002753 464 GMFLAVAGLHGLI--LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS 541 (884)
Q Consensus 464 G~~lavag~dg~i--iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~~l~~~~~l~~~~ 541 (884)
|..+..|+.|..- +|++++|+-.-. -..||..+....+.|.++.|+.+.+ +..+|+|+.. +......+.+
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGqllDi-LsGHEgPVs~l~f~~~~~~LaS~SW-----DkTVRiW~if--~s~~~vEtl~ 518 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQLLDI-LSGHEGPVSGLSFSPDGSLLASGSW-----DKTVRIWDIF--SSSGTVETLE 518 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCeeeeh-hcCCCCcceeeEEccccCeEEeccc-----cceEEEEEee--ccCceeeeEe
Confidence 9999999999975 999999974321 1235554444468899999998854 4688999874 3333455666
Q ss_pred cCCccEEEE--ccCCEEEEEEcCCeEEEEEEE
Q 002753 542 LLAKPIVMD--VYEDYILVTYRPFDVHIFHVK 571 (884)
Q Consensus 542 ~~~~~~~~~--~~~~~llv~~~~~~i~i~~~~ 571 (884)
+++.++.+. +.++-++|++-||.|.+|+.+
T Consensus 519 i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 519 IRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred eccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 777666555 568899999999999999986
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=2.4e-27 Score=248.97 Aligned_cols=375 Identities=15% Similarity=0.237 Sum_probs=245.7
Q ss_pred eEEEEEecCeEEEEE-ccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 002753 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (884)
Q Consensus 23 ~vv~fspdg~lla~~-t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~ 101 (884)
.+|.|||||++||++ +|+.+.|||- |.+..++.+.- +-.+.|.+.+++||||++.++++++|.+++||++.....
T Consensus 194 ~~VRysPDG~~Fat~gsDgki~iyDG-ktge~vg~l~~---~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAGSDGKIYIYDG-KTGEKVGELED---SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred eeEEECCCCCeEEEecCCccEEEEcC-CCccEEEEecC---CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 558999999999998 5789999999 69998888764 345779999999999999999999999999999976643
Q ss_pred eeecC-CCCCCCc---eeeee----eeeeecc------------ccccccceeEEEE--eecCCeEEEEecCCcEEEEec
Q 002753 102 SIQIG-GKQPSGL---FFIKI----SLVLNEQ------------LPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISW 159 (884)
Q Consensus 102 ~~~~~-~~~~~~~---~l~~~----~~~~~~~------------~~~~~~~~~v~~i--~~~~~~llv~~~~g~i~~~~w 159 (884)
...+. +....++ ++|.- .++.++. ..+.++...|+++ .++++.++.|..||.|.. |
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~--W 347 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS--W 347 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE--E
Confidence 22221 1112221 22221 1111111 1234666667766 566789999999999965 6
Q ss_pred CCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccC---CCccEEEEEEcCCcceEEEEEcCCcEEEEe
Q 002753 160 KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP---ISSAIIWLELCLPMRLLFVLYSNGQLMSCS 236 (884)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~ 236 (884)
+.......++....|..+..+..... .+++.+..-.+.+..+.... .+..+. ....+.. .+++.+||.++++.
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~~-~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~-~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAASE-SGELFTIGWDDTLRVISLKDNGYTKSEVV--KLGSQPK-GLAVLSDGGTAVVA 423 (603)
T ss_pred ecCCccccccccccccceEEEEeecC-CCcEEEEecCCeEEEEecccCccccccee--ecCCCce-eEEEcCCCCEEEEE
Confidence 65554433333334444443332221 12222222222222222211 111121 2222222 34555666555544
Q ss_pred ecCCccceee-ecccccccCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEE
Q 002753 237 VSKKGLKLAE-FIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (884)
Q Consensus 237 ~~d~~i~~w~-~~~~~~~~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~ 315 (884)
..+. +.+.. ........---...++|++|+++.+|+|++||.|+||.+.. .......... .|.++|+++++
T Consensus 424 ~~~~-iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g-~~l~ee~~~~------~h~a~iT~vay 495 (603)
T KOG0318|consen 424 CISD-IVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG-DELKEEAKLL------EHRAAITDVAY 495 (603)
T ss_pred ecCc-EEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC-Ccccceeeee------cccCCceEEEE
Confidence 4332 22222 11111111112345689999999999999999999999986 4433322221 29999999999
Q ss_pred CCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCce-EEEEecC
Q 002753 316 TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR-LYAIEEG 391 (884)
Q Consensus 316 spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~-l~~~~~~ 391 (884)
||||.+||+|...+.+-+||+.++.....--..|.+.|++++|+|+. ..+++|+ .+.+|+..... .+..-..
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n----~~vATGSlDt~Viiysv~kP~~~i~iknA 571 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN----KLVATGSLDTNVIIYSVKKPAKHIIIKNA 571 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc----eEEEeccccceEEEEEccChhhheEeccc
Confidence 99999999999999999999998876333333348899999999998 8999998 89999987532 2444566
Q ss_pred CcceEEEEee--cceeecccCCCCceeeee
Q 002753 392 SSERVLIFSF--GKCCLNRGVSGMTYARQV 419 (884)
Q Consensus 392 ~~~~v~~~~~--~~~~~s~~~d~~~~~w~l 419 (884)
|...+..+.+ ...+++.+.|..+++|.+
T Consensus 572 H~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 572 HLGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred cccCceeEEEecCceEEeccCcceeEEecc
Confidence 8777888877 668899999999999986
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.9e-29 Score=257.16 Aligned_cols=264 Identities=15% Similarity=0.174 Sum_probs=220.3
Q ss_pred eEEEEEcCCcEEEEeecCCccceeeeccccc---ccCCCCcEE-EEEcCC--CCEEEEEecCCeEEEEEccCCCcceEEE
Q 002753 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPE--QQILAVGTRRGVVELYDLAESASLIRTV 295 (884)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~---~~~h~~~v~-va~sp~--~~~la~g~~dg~v~lw~~~~~~~~~~~l 295 (884)
..+.++.|++.+++++-+|.+++|+...... +.||...+. +.|+|. +.-+|+|+.||++++|+++. ...+..+
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-e~~l~~l 257 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-ETPLQDL 257 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-Ccchhhh
Confidence 4466899999999999999999998876543 378988776 999997 66899999999999999987 6788888
Q ss_pred eeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--
Q 002753 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (884)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~-- 373 (884)
.+ |...|..++|+|+|++|++++.|.++++||+.++....-.+|| ..+|.+++|.|+| ..+++|+
T Consensus 258 ~g--------H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-s~~v~~iaf~~DG----SL~~tGGlD 324 (459)
T KOG0272|consen 258 EG--------HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH-SKGVFSIAFQPDG----SLAATGGLD 324 (459)
T ss_pred hc--------chhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc-ccccceeEecCCC----ceeeccCcc
Confidence 88 9999999999999999999999999999999999888888888 7889999999999 8888887
Q ss_pred -eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccc
Q 002753 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (884)
Q Consensus 374 -~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~ 449 (884)
..++||.++++.++.+.+|...|+.+.| |-.++|||.|+++++|++..... ..+.-
T Consensus 325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~--------------------ly~ip 384 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE--------------------LYTIP 384 (459)
T ss_pred chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc--------------------ceecc
Confidence 7899999999999999999999955555 88999999999999999887655 33455
Q ss_pred cCCCceEEEEEcc-CCCEEEEEeCCceE-EEEccCCcEEEec-CccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEe
Q 002753 450 SQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRVFG-DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFY 526 (884)
Q Consensus 450 ~~~~~I~~va~S~-dG~~lavag~dg~i-iwd~~s~~w~~f~-~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y 526 (884)
+|..-|..|.|+| .|.+|++||.|+++ +|+..+ |...+ -..||..+...+..-.++.++++++ +..+++|
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~-----DRT~KLW 457 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQAIATSSF-----DRTIKLW 457 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccCCceEEEecc-----Cceeeec
Confidence 7999999999998 69999999999999 999766 43332 2334543333344555666777744 3455665
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4.4e-27 Score=256.27 Aligned_cols=229 Identities=17% Similarity=0.238 Sum_probs=192.8
Q ss_pred EEcCCcEEEEeecCCccceeeecccccc-------cCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEccCCCcce---E
Q 002753 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLI---R 293 (884)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~~~-------~~h~~~v~-va~sp~-~~~la~g~~dg~v~lw~~~~~~~~~---~ 293 (884)
+..+|-++++++.|.++.+|........ .+|+..+. ++++.. ..++++++.|+++++|++.. .+.. .
T Consensus 373 ~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~ 451 (775)
T KOG0319|consen 373 VWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPI 451 (775)
T ss_pred ecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC-cccccccc
Confidence 4567888999999999999976432221 67888776 888764 47899999999999999876 2111 1
Q ss_pred EEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 002753 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (884)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~ 373 (884)
.+... .....|...|+|++.+|+.+++|+|+.|++.++|++..+.+..+|.+| ...|.++.|+|++ +.+++++
T Consensus 452 ~~~~~--~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~Fs~~d----q~laT~S 524 (775)
T KOG0319|consen 452 VLTCR--YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSFSKND----QLLATCS 524 (775)
T ss_pred eehhh--HHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEecccc----ceeEecc
Confidence 11100 011248999999999999999999999999999999999999999999 8899999999998 8888776
Q ss_pred ---eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccc
Q 002753 374 ---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (884)
Q Consensus 374 ---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~ 447 (884)
++++|...++.++.++.||+..|...+| ++.++|++.||-+++|++.++.. ..+
T Consensus 525 gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC--------------------~~t 584 (775)
T KOG0319|consen 525 GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC--------------------EMT 584 (775)
T ss_pred CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh--------------------hhh
Confidence 9999999999999999999999988888 88999999999999999988765 668
Q ss_pred cccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002753 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (884)
Q Consensus 448 ~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s 482 (884)
+-+|+..|++++.+|++..+++||.||.+ +|.=.|
T Consensus 585 lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 585 LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 88999999999999999999999999999 886544
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=8.4e-27 Score=228.68 Aligned_cols=288 Identities=14% Similarity=0.146 Sum_probs=218.6
Q ss_pred eChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEE
Q 002753 59 RDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI 138 (884)
Q Consensus 59 r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i 138 (884)
|+.+. +.+.+.++.|++|+++|++++.||.+.|||.-+.++...+ ++........++
T Consensus 49 r~LkG--H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai---------------------pl~s~WVMtCA~ 105 (343)
T KOG0286|consen 49 RTLKG--HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI---------------------PLPSSWVMTCAY 105 (343)
T ss_pred EEecc--cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE---------------------ecCceeEEEEEE
Confidence 44443 4578899999999999999999999999998655432211 122233345677
Q ss_pred eecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcC
Q 002753 139 VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL 218 (884)
Q Consensus 139 ~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 218 (884)
+|.++.+++|.-|+...+++......... ......+.+|.+++.+..|
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~------------------------------~~v~r~l~gHtgylScC~f-- 153 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGN------------------------------VRVSRELAGHTGYLSCCRF-- 153 (343)
T ss_pred CCCCCeEEecCcCceeEEEeccccccccc------------------------------ceeeeeecCccceeEEEEE--
Confidence 88899999988888766665542211100 0111345677777877664
Q ss_pred CcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEccCCCcceE
Q 002753 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIR 293 (884)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp-~~~~la~g~~dg~v~lw~~~~~~~~~~ 293 (884)
..|+ .+++++.|.+.-+||..++++. .||..-|- ++++| +++.+++|+-|++.+|||++. +.+.+
T Consensus 154 --------~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~q 223 (343)
T KOG0286|consen 154 --------LDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQ 223 (343)
T ss_pred --------cCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeE
Confidence 4455 4677889999999999998765 68887665 99999 999999999999999999999 89999
Q ss_pred EEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccc-cccceeeeeecCCCCCCccceeec
Q 002753 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSG 372 (884)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~-~~~~v~s~~~s~~~~~~~~~l~sg 372 (884)
++.+ |...|++++|.|+|..+|+|++|++.++||+...+.+..+... -...|++++||..
T Consensus 224 tF~g--------hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S----------- 284 (343)
T KOG0286|consen 224 TFEG--------HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS----------- 284 (343)
T ss_pred eecc--------cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc-----------
Confidence 9999 9999999999999999999999999999999887766555421 0123444444333
Q ss_pred ceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCC
Q 002753 373 TSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (884)
Q Consensus 373 ~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~ 452 (884)
|+.+.+|..|.++.+||.+.++. ...+.+|.
T Consensus 285 -----------------------------GRlLfagy~d~~c~vWDtlk~e~--------------------vg~L~GHe 315 (343)
T KOG0286|consen 285 -----------------------------GRLLFAGYDDFTCNVWDTLKGER--------------------VGVLAGHE 315 (343)
T ss_pred -----------------------------ccEEEeeecCCceeEeeccccce--------------------EEEeeccC
Confidence 44555666777888888777654 44677999
Q ss_pred CceEEEEEccCCCEEEEEeCCceE-EEE
Q 002753 453 WPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (884)
Q Consensus 453 ~~I~~va~S~dG~~lavag~dg~i-iwd 479 (884)
..|.++..+|||..+++|+.|.++ +|+
T Consensus 316 NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 316 NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999998 884
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=5.6e-25 Score=214.80 Aligned_cols=268 Identities=17% Similarity=0.239 Sum_probs=213.6
Q ss_pred ccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccc--------cccCCCCcEE-EEEcCCCCEEEEE
Q 002753 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--------KELGSGDAVC-ASIAPEQQILAVG 274 (884)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~--------~~~~h~~~v~-va~sp~~~~la~g 274 (884)
+..++..|+.++-. ..+-..++.++.|.++-.|+..... .+.||+..+. ++.++||++..+|
T Consensus 11 l~gh~d~Vt~la~~---------~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~ 81 (315)
T KOG0279|consen 11 LEGHTDWVTALAIK---------IKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA 81 (315)
T ss_pred ecCCCceEEEEEee---------cCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEec
Confidence 34566677776632 1234567777777777788765321 2378999998 9999999999999
Q ss_pred ecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecccccccee
Q 002753 275 TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS 354 (884)
Q Consensus 275 ~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~ 354 (884)
+.||++|+||+.. ++..+.+.+ |+..|.+++||||.+.+++|+.|+++++|++.|.+......+.+.+.|+
T Consensus 82 swD~~lrlWDl~~-g~~t~~f~G--------H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 82 SWDGTLRLWDLAT-GESTRRFVG--------HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred cccceEEEEEecC-CcEEEEEEe--------cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 9999999999998 788889999 9999999999999999999999999999999987655444443378899
Q ss_pred eeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceE--EEEee-cceeecccCCCCceeeeeeecCCeEEE
Q 002753 355 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLV 428 (884)
Q Consensus 355 s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i 428 (884)
++.|+|+. ....+++++ ++++|+.++.++.....+|+..+ ..+++ |..+++|+.|+...+|++.++..
T Consensus 153 cvrfsP~~--~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~---- 226 (315)
T KOG0279|consen 153 CVRFSPNE--SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN---- 226 (315)
T ss_pred EEEEcCCC--CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce----
Confidence 99999984 125677776 99999999999999999999888 66677 88999999999999999988776
Q ss_pred EecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEE------EecCccceeeeEEEEE
Q 002753 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR------VFGDITQEQKIQSKGL 502 (884)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~iiwd~~s~~w~------~f~~~~~e~~~~v~~~ 502 (884)
-.+++|+.+|++++|+|+.-+|+.|...+..|||+.+++.- ..++.....+..+..+
T Consensus 227 -----------------lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsl 289 (315)
T KOG0279|consen 227 -----------------LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSL 289 (315)
T ss_pred -----------------eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEE
Confidence 13568899999999999999999998888669999998631 1122122223457789
Q ss_pred EEe--CCEEEEE
Q 002753 503 LWL--GKIIVVC 512 (884)
Q Consensus 503 ~W~--~~~lv~~ 512 (884)
+|. |..|.++
T Consensus 290 aws~dG~tLf~g 301 (315)
T KOG0279|consen 290 AWSADGQTLFAG 301 (315)
T ss_pred EEcCCCcEEEee
Confidence 998 5566655
No 14
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=6.7e-24 Score=231.40 Aligned_cols=265 Identities=17% Similarity=0.255 Sum_probs=210.1
Q ss_pred eEEEEEcCCcEEEEeecCCccceeeecccccc--cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeecc
Q 002753 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (884)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~ 299 (884)
..+.++.|..++++++ .+.+++|+..+.++. .....+.|..|-|.++++++|..+|.+.+||+.. ...+.+.+.
T Consensus 377 Rsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~A-- 452 (888)
T KOG0306|consen 377 RSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETIRA-- 452 (888)
T ss_pred eEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhhhc--
Confidence 4556777777777654 457999999887765 2334566789999999999999999999999998 777777777
Q ss_pred CCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc------CCe-eE------EEeccccccceeeeeecCCCCCCc
Q 002753 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS------GCR-LM------STIRQISLSSISSPIVKPNQDCKY 366 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~------~~~-l~------~tl~~~~~~~v~s~~~s~~~~~~~ 366 (884)
|.|.+.+++-+|||..+++|+.|++|++||.. |.+ .+ .+++- .+.|.++.+|||+
T Consensus 453 ------HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel--~ddvL~v~~Spdg---- 520 (888)
T KOG0306|consen 453 ------HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL--EDDVLCVSVSPDG---- 520 (888)
T ss_pred ------cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec--cccEEEEEEcCCC----
Confidence 99999999999999999999999999999973 111 11 12221 3578999999999
Q ss_pred cceeecc---eeEEEecCCceEEEEecCCcceEEE--Eee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEE
Q 002753 367 EPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (884)
Q Consensus 367 ~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~ 440 (884)
.+++-+- ++.++..++-+.+..+-||.-+|.+ +++ ++.++|||.|.++++|-+..|+.
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC---------------- 584 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC---------------- 584 (888)
T ss_pred cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh----------------
Confidence 7777654 8999999999999999999999954 555 89999999999999999999886
Q ss_pred EeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEec-CccceeeeEEEEEEEeCCEEEEEEEecCC
Q 002753 441 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG-DITQEQKIQSKGLLWLGKIIVVCNYIDSS 518 (884)
Q Consensus 441 ~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~-~~~~e~~~~v~~~~W~~~~lv~~~~~~~~ 518 (884)
...+.+|...|.++.|-|+...+.++|+||.+ .||-.. ...+. -..|..+.-+..+.-.|+++++| +
T Consensus 585 ----HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~~G~~vvs~-----s 653 (888)
T KOG0306|consen 585 ----HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSPNGSFVVSS-----S 653 (888)
T ss_pred ----hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcCCCCeEEec-----c
Confidence 67889999999999999999999999999999 998643 22221 12222322333444557788877 5
Q ss_pred CeEEEEEeeCC
Q 002753 519 NTYELLFYPRY 529 (884)
Q Consensus 519 ~~~elr~y~~~ 529 (884)
.+..||+|.+.
T Consensus 654 hD~sIRlwE~t 664 (888)
T KOG0306|consen 654 HDKSIRLWERT 664 (888)
T ss_pred CCceeEeeecc
Confidence 56889999985
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=8.4e-26 Score=249.34 Aligned_cols=228 Identities=18% Similarity=0.270 Sum_probs=204.6
Q ss_pred ceEEEEEcCCcEEEEeecCCccceeeecccc----------------------------------cccCCCCcEE-EEEc
Q 002753 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----------------------------------KELGSGDAVC-ASIA 265 (884)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~----------------------------------~~~~h~~~v~-va~s 265 (884)
-.++-+++|++++|.+..|..+++|.....+ .+.||+.+|. ++|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 3567789999999999999999888765210 0147999999 9999
Q ss_pred CCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 002753 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (884)
Q Consensus 266 p~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl 345 (884)
|+.++|.++++|++||+|.+++ ..++-..++ |..||+++.|+|-|.++|||+.|++-++|+.........+
T Consensus 461 Pd~rfLlScSED~svRLWsl~t-~s~~V~y~G--------H~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKG--------HLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred ccccceeeccCCcceeeeeccc-ceeEEEecC--------CCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence 9999999999999999999998 677777777 9999999999999999999999999999999998888888
Q ss_pred ccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEE--EEee-cceeecccCCCCceeeee
Q 002753 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQV 419 (884)
Q Consensus 346 ~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~l 419 (884)
.+| .+.|.++.|+|+. .++++|+ +++.|+..++..++.+.||.++|. ++++ |+++++|+.|+.+.+||+
T Consensus 532 agh-lsDV~cv~FHPNs----~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 532 AGH-LSDVDCVSFHPNS----NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred ccc-ccccceEEECCcc----cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 888 8899999999998 8999998 999999999999999999999994 5555 999999999999999998
Q ss_pred eecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002753 420 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (884)
Q Consensus 420 ~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s 482 (884)
.++.. ...+.+|.+.|.++.||.||..||+||.|..+ +||+..
T Consensus 607 ~~~~~--------------------v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 607 ANGSL--------------------VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCcc--------------------hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 87664 56788999999999999999999999999999 999854
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=7.8e-25 Score=227.49 Aligned_cols=324 Identities=15% Similarity=0.162 Sum_probs=234.4
Q ss_pred ccceeEEEEcCCcc-EEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeec--CC
Q 002753 67 EGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NK 143 (884)
Q Consensus 67 ~G~~~~v~wsPDg~-~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~--~~ 143 (884)
..++...+|+|-.. .+|+++.+-..++|++......... +..+. ..+ ....+ -......|++++.+ +.
T Consensus 178 ~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~----q~~lr-h~~--~~~~~--s~~~nkdVT~L~Wn~~G~ 248 (524)
T KOG0273|consen 178 ESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST----QLVLR-HCI--REGGK--SVPSNKDVTSLDWNNDGT 248 (524)
T ss_pred CCceEEEecCchhhhhhhccCCccceeeeeehhhccccch----hhhhh-hhh--hhhcc--cCCccCCcceEEecCCCC
Confidence 45678899999887 9999999999999999642111000 00000 000 00000 00112236677655 78
Q ss_pred eEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceE
Q 002753 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (884)
Q Consensus 144 ~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (884)
.|+.|..+|.+++|.-++... ..+..|+++|.++.|
T Consensus 249 ~LatG~~~G~~riw~~~G~l~-------------------------------------~tl~~HkgPI~slKW------- 284 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGNLI-------------------------------------STLGQHKGPIFSLKW------- 284 (524)
T ss_pred eEEEeecCcEEEEEecCchhh-------------------------------------hhhhccCCceEEEEE-------
Confidence 899999999999866554432 123467889999998
Q ss_pred EEEEcCCcEEEEeecCCccceeeecccccc---cCCCCc-EEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeecc
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA-VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~-v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~ 299 (884)
+.+|.++++++-|+++-+||..++... .-|+.. +-+.|- +..-+|+.+.||.|+|+.+.. ..++.++.+
T Consensus 285 ---nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~-~~P~~t~~G-- 357 (524)
T KOG0273|consen 285 ---NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGE-DRPVKTFIG-- 357 (524)
T ss_pred ---cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe-cCceEeecCCCceEEEEEecC-CCcceeeec--
Confidence 567888888888888888998776543 335544 335553 345688999999999999987 788889998
Q ss_pred CCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEe
Q 002753 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~ 379 (884)
|.++|.++.|.|.|.+|+++++|+++++|+.........+..| ..++..+.++|++. ..|+
T Consensus 358 ------H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-skei~t~~wsp~g~------------v~~n 418 (524)
T KOG0273|consen 358 ------HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-SKEIYTIKWSPTGP------------VTSN 418 (524)
T ss_pred ------ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-ccceeeEeecCCCC------------ccCC
Confidence 9999999999999999999999999999999888888888888 66788888888762 1122
Q ss_pred cCCceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEE
Q 002753 380 EYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVA 459 (884)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va 459 (884)
+.. +..+++++.|+++++|++..+.. ..++..|+.||.+++
T Consensus 419 ~~~-------------------~~~l~sas~dstV~lwdv~~gv~--------------------i~~f~kH~~pVysva 459 (524)
T KOG0273|consen 419 PNM-------------------NLMLASASFDSTVKLWDVESGVP--------------------IHTLMKHQEPVYSVA 459 (524)
T ss_pred CcC-------------------CceEEEeecCCeEEEEEccCCce--------------------eEeeccCCCceEEEE
Confidence 211 33457888999999999877654 457889999999999
Q ss_pred EccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEe--CCEEEEE
Q 002753 460 ASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVC 512 (884)
Q Consensus 460 ~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~lv~~ 512 (884)
|||+|+|+|+|+.||.+ +|++.+++- +.... ..--|..++|. ++.+.+|
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~~~l--~~s~~--~~~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKTGKL--VKSYQ--GTGGIFELCWNAAGDKLGAC 511 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccchhe--eEeec--CCCeEEEEEEcCCCCEEEEE
Confidence 99999999999999999 999999863 21111 11226689996 5555544
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=213.76 Aligned_cols=277 Identities=16% Similarity=0.151 Sum_probs=215.8
Q ss_pred ccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecC
Q 002753 202 DHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRR 277 (884)
Q Consensus 202 ~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~d 277 (884)
..+.+|...|.+|.| ++|++.+++++.|+.+-+||..+..+. +-....|- +||+|.|+++|+|+-|
T Consensus 49 r~LkGH~~Ki~~~~w----------s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDW----------STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred EEecccccceeeeEe----------cCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC
Confidence 446788888999997 678888888888888888998876553 22244555 9999999999999999
Q ss_pred CeEEEEEccCC--C---cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccc
Q 002753 278 GVVELYDLAES--A---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 352 (884)
Q Consensus 278 g~v~lw~~~~~--~---~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~ 352 (884)
+.+.||++... . ...+.+.+ |++-+.|+.|-+|+ .|++|+.|.+..+||+++++....+.+| ...
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~g--------HtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH-~gD 188 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAG--------HTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGH-TGD 188 (343)
T ss_pred ceeEEEecccccccccceeeeeecC--------ccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCC-ccc
Confidence 99999999852 1 23345666 99999999999876 4778888999999999999999999998 788
Q ss_pred eeeeeecC-CCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCe
Q 002753 353 ISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDR 425 (884)
Q Consensus 353 v~s~~~s~-~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~ 425 (884)
|-++.++| ++ +.+++|+ ..++||.+.+.+.+++.+|+..|-.+.| +..+++|+.|++.+++|+..+.+
T Consensus 189 V~slsl~p~~~----ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~- 263 (343)
T KOG0286|consen 189 VMSLSLSPSDG----NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE- 263 (343)
T ss_pred EEEEecCCCCC----CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-
Confidence 99999999 55 7888887 8999999999999999999999965555 88999999999999999876443
Q ss_pred EEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEE
Q 002753 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW 504 (884)
Q Consensus 426 ~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W 504 (884)
+.+|+. ..-+.+|++++||..|++|..|..|..+ +||.-.++--. .-..||+.+.+.++.-
T Consensus 264 ~a~ys~-----------------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg-~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 264 LAVYSH-----------------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG-VLAGHENRVSCLGVSP 325 (343)
T ss_pred Eeeecc-----------------CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE-EeeccCCeeEEEEECC
Confidence 433331 1234689999999999999999999999 99987765221 1224566544444443
Q ss_pred eCCEEEEEEEecCCCeEEEEEe
Q 002753 505 LGKIIVVCNYIDSSNTYELLFY 526 (884)
Q Consensus 505 ~~~~lv~~~~~~~~~~~elr~y 526 (884)
.+-.+..+ +-+..+|+|
T Consensus 326 DG~av~Tg-----SWDs~lriW 342 (343)
T KOG0286|consen 326 DGMAVATG-----SWDSTLRIW 342 (343)
T ss_pred CCcEEEec-----chhHheeec
Confidence 33334433 233567776
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=7.7e-24 Score=206.87 Aligned_cols=274 Identities=16% Similarity=0.227 Sum_probs=213.9
Q ss_pred cCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEccCC----CcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEc
Q 002753 254 LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (884)
Q Consensus 254 ~~h~~~v~-va~sp~-~~~la~g~~dg~v~lw~~~~~----~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (884)
.+|.+.|. ++..+. ...+.+++.|.++.+|++... +...+.+.+ |...|..+..++||++..+++.
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G--------HsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG--------HSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec--------cceEecceEEccCCceEEeccc
Confidence 68999888 888886 678999999999999999652 345667777 9999999999999999999999
Q ss_pred CCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCC-cceEEEEee--
Q 002753 328 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERVLIFSF-- 401 (884)
Q Consensus 328 dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~-~~~v~~~~~-- 401 (884)
|+++++||+.+++..+.|.+| ...|.+++|+++. ..+++|+ ++++|+.-+...+....+. .+-|.++.|
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH-~~dVlsva~s~dn----~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGH-TKDVLSVAFSTDN----RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred cceEEEEEecCCcEEEEEEec-CCceEEEEecCCC----ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence 999999999999999999999 7789999999998 8999998 9999999887766665554 667755444
Q ss_pred ---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-E
Q 002753 402 ---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-L 477 (884)
Q Consensus 402 ---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-i 477 (884)
.-.+++++.|+++++|++.+-+- ...+.+|++.++.+++||||...|+||+||.+ +
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l--------------------~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~L 218 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQL--------------------RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAML 218 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcch--------------------hhccccccccEEEEEECCCCCEEecCCCCceEEE
Confidence 23788999999999999866443 56889999999999999999999999999999 9
Q ss_pred EEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEEe--cC------CccEEE
Q 002753 478 YDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS--LL------AKPIVM 549 (884)
Q Consensus 478 wd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~~l~~~~~l~~~~--~~------~~~~~~ 549 (884)
||++.++- +. .-+....|..+++.++-+..|.... ..+++|+.+ ....+..+. +. ..|..+
T Consensus 219 wdL~~~k~-ly---sl~a~~~v~sl~fspnrywL~~at~----~sIkIwdl~---~~~~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 219 WDLNEGKN-LY---SLEAFDIVNSLCFSPNRYWLCAATA----TSIKIWDLE---SKAVVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred EEccCCce-eE---eccCCCeEeeEEecCCceeEeeccC----CceEEEecc---chhhhhhccccccccccccCCcEEE
Confidence 99999874 22 1123234678999887766664432 348999864 111111111 11 134444
Q ss_pred E----ccCCEEEEEEcCCeEEEEEEE
Q 002753 550 D----VYEDYILVTYRPFDVHIFHVK 571 (884)
Q Consensus 550 ~----~~~~~llv~~~~~~i~i~~~~ 571 (884)
+ ..+..|...+.|+-|++|.+.
T Consensus 288 slaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 288 SLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEcCCCcEEEeeecCCcEEEEEee
Confidence 3 245678778888899999875
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=2.2e-25 Score=246.04 Aligned_cols=242 Identities=17% Similarity=0.223 Sum_probs=198.9
Q ss_pred ccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCe
Q 002753 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGV 279 (884)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~ 279 (884)
+.+|.++|.+.. ++||.+++++++.|.++++|...+..+. .||..+|+ +.|+|.|-++|||+.|++
T Consensus 447 L~GH~GPVyg~s----------FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 447 LYGHSGPVYGCS----------FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred eecCCCceeeee----------ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce
Confidence 567788887766 5899999999999999999998876654 79999999 999999999999999999
Q ss_pred EEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 002753 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (884)
Q Consensus 280 v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s 359 (884)
-++|..+. ....+.+.+ |-+.|.|++|.|+..++|+|+.|+++|+||+.+|..+..+.|| .+.|.+++||
T Consensus 517 ArLWs~d~-~~PlRifag--------hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~S 586 (707)
T KOG0263|consen 517 ARLWSTDH-NKPLRIFAG--------HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFS 586 (707)
T ss_pred eeeeeccc-CCchhhhcc--------cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEc
Confidence 99999987 788888888 9999999999999999999999999999999999999999998 8999999999
Q ss_pred CCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeE-----EE
Q 002753 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRL-----LV 428 (884)
Q Consensus 360 ~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~-----~i 428 (884)
|+| ..+++|. .+++||..+++++....+|.+.+..++| +..+++++.|+++++||+.+..... ..
T Consensus 587 p~G----r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~ 662 (707)
T KOG0263|consen 587 PCG----RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHIST 662 (707)
T ss_pred CCC----ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccccc
Confidence 999 9999997 8999999999999999999999977777 8899999999999999987654431 11
Q ss_pred EecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEE
Q 002753 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA 470 (884)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lava 470 (884)
+.++...... ...-+...|..-+-||..+.|..-.-.+|+|
T Consensus 663 ~~~~~~~~~~-~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 663 SNSAITQENN-ASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ccccccccCC-CCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 1111111000 0000122344445588888888666555554
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9e-24 Score=205.54 Aligned_cols=278 Identities=12% Similarity=0.147 Sum_probs=211.5
Q ss_pred ccCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEccCCC--cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC
Q 002753 253 ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (884)
Q Consensus 253 ~~~h~~~v~-va~sp~-~~~la~g~~dg~v~lw~~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d 328 (884)
+.+|.+.+. ++++|- |..||+|+.|..||+|+...+. .+...+.. +|+..|++++|+|.|++||+|+.|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-------~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-------GHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-------cchheeeeeeecCCCcEEEEeecc
Confidence 367888887 999998 8999999999999999987412 22223322 499999999999999999999999
Q ss_pred CcEEEEeccCC--eeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecC---CceEEEEecCCcceE--EE
Q 002753 329 RGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERV--LI 398 (884)
Q Consensus 329 g~v~vW~~~~~--~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~---~~~l~~~~~~~~~~v--~~ 398 (884)
.++.||.-.++ +++.++++| .++|.+++|+++| .+|++.+ ++-+|... .+++..++++|.+.| +.
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG----~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~ 157 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGH-ENEVKCVAWSASG----NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI 157 (312)
T ss_pred ceEEEeecCCCceeEEeeeecc-ccceeEEEEcCCC----CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE
Confidence 99999998755 567889998 8899999999999 9999887 78888775 467888999998888 55
Q ss_pred Eee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-
Q 002753 399 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (884)
Q Consensus 399 ~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i- 476 (884)
+.+ ...++++|+|+++++|.-..+++ |. +.+++.+|+..|++++|++.|..|++++.|+++
T Consensus 158 WHPt~dlL~S~SYDnTIk~~~~~~ddd--------------W~---c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 158 WHPTEDLLFSCSYDNTIKVYRDEDDDD--------------WE---CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred EcCCcceeEEeccCCeEEEEeecCCCC--------------ee---EEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence 666 67889999999999998654333 32 345677899999999999999999999999999
Q ss_pred EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCC-CCCCcc--eEE----EEecCCccEEE
Q 002753 477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSS--LLC----RKSLLAKPIVM 549 (884)
Q Consensus 477 iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~-~l~~~~--~l~----~~~~~~~~~~~ 549 (884)
+|-..+. ...++...+..+.|.++.+..+ .++..+|+|... ..+... ++. .++..-..+.-
T Consensus 221 Iw~~~~~-------~~~~~sr~~Y~v~W~~~~IaS~-----ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 221 IWRLYTD-------LSGMHSRALYDVPWDNGVIASG-----GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred eeeeccC-------cchhcccceEeeeecccceEec-----cCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 9976532 2233444567789995555555 456789999875 323211 111 22222233555
Q ss_pred Ecc-CCEEEEEEcCCeEEEEEEE
Q 002753 550 DVY-EDYILVTYRPFDVHIFHVK 571 (884)
Q Consensus 550 ~~~-~~~llv~~~~~~i~i~~~~ 571 (884)
+.. .+.|+-..+||.+.+|.+.
T Consensus 289 ~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCceeecCCCceEEEEEec
Confidence 553 4556667788999999875
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=204.81 Aligned_cols=270 Identities=12% Similarity=0.227 Sum_probs=215.4
Q ss_pred cCCCccEEEEEEcCCcceEEEEEcC-CcEEEEeecCCccceeeecccccc-------cCCCCcEE-EEEcCCCCEEEEEe
Q 002753 205 FPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAVC-ASIAPEQQILAVGT 275 (884)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~d~~i~~w~~~~~~~~-------~~h~~~v~-va~sp~~~~la~g~ 275 (884)
.+++..+..++|+ |- |.++++++.|..+++|+...+..+ .+|..+++ +||+|.|++||+|+
T Consensus 11 ~gh~~r~W~~awh----------p~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 11 SGHKDRVWSVAWH----------PGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred cCCCCcEEEEEec----------cCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee
Confidence 4556667777764 44 789999999999999987743322 47999998 99999999999999
Q ss_pred cCCeEEEEEccCC-CcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCC---eeEEEecccccc
Q 002753 276 RRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLS 351 (884)
Q Consensus 276 ~dg~v~lw~~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~---~l~~tl~~~~~~ 351 (884)
.|.++.||.-.+. -+++.++.+ |...|.|++||++|++||++++|+.|-||.+... .+...|++| +.
T Consensus 81 FD~t~~Iw~k~~~efecv~~lEG--------HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tq 151 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECVATLEG--------HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQ 151 (312)
T ss_pred ccceEEEeecCCCceeEEeeeec--------cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-cc
Confidence 9999999986541 267788888 9999999999999999999999999999999744 356677888 78
Q ss_pred ceeeeeecCCCCCCccceeecc---eeEEEecC---CceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeec
Q 002753 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYG 422 (884)
Q Consensus 352 ~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~---~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~ 422 (884)
.|..+.|+|.. ..|+|++ ++++|.-. ..++..++.+|...|+.+.| +..+++++.|+++++|....+
T Consensus 152 DVK~V~WHPt~----dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 152 DVKHVIWHPTE----DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred cccEEEEcCCc----ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence 89999999997 8888887 89999765 45788899999999988877 778999999999999986532
Q ss_pred CCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC----CcEEEecCccceeee
Q 002753 423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ----KKWRVFGDITQEQKI 497 (884)
Q Consensus 423 ~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s----~~w~~f~~~~~e~~~ 497 (884)
-. .-|.+++..++|. + ..||+||.|+.+ +|.-.. ..|+++....+.++.
T Consensus 228 ~~------------------------~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~ 281 (312)
T KOG0645|consen 228 LS------------------------GMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV 281 (312)
T ss_pred cc------------------------hhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence 11 2467889999998 4 479999999988 887654 467777655555555
Q ss_pred EEEEEEEeC---CEEEEEEEecCCCeEEEEEeeC
Q 002753 498 QSKGLLWLG---KIIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 498 ~v~~~~W~~---~~lv~~~~~~~~~~~elr~y~~ 528 (884)
.|..+.|.+ +.|++| +.+.++++|..
T Consensus 282 dVNsV~w~p~~~~~L~s~-----~DDG~v~~W~l 310 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASG-----GDDGIVNFWEL 310 (312)
T ss_pred ccceEEEcCCCCCceeec-----CCCceEEEEEe
Confidence 688899986 455555 34477888753
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=3.8e-24 Score=233.54 Aligned_cols=307 Identities=16% Similarity=0.223 Sum_probs=238.4
Q ss_pred EEEEEecCeEEEEEccCeEEEEecCCceeEEEEEeeChHhhh-hccceeEEEE-cCCccEEEEEecCcEEEEEEEEecCc
Q 002753 24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQ-REGENLQAVW-SPDTKLIAVVTSSLYLHIFKVQITEK 101 (884)
Q Consensus 24 vv~fspdg~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~-~~G~~~~v~w-sPDg~~Lav~t~~g~l~l~~l~~~~~ 101 (884)
+..+...+++|++.++..+.+++.+ ...+ . +.+. -++++.+++| -|+.+.|||+|+.+.+++|++.....
T Consensus 287 ~~~~~~~~~~l~vtaeQnl~l~d~~-~l~i-~------k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c 358 (775)
T KOG0319|consen 287 LLAIESMSQLLLVTAEQNLFLYDED-ELTI-V------KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC 358 (775)
T ss_pred ceeccccCceEEEEccceEEEEEcc-ccEE-e------hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce
Confidence 3556667888888889999999985 4332 1 1222 3577888875 68899999999999999998765543
Q ss_pred eeecCCCCCCCceeeeeeeeeeccccccccceeEEEEe--ecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccc
Q 002753 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (884)
Q Consensus 102 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~--~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i 179 (884)
.+ +.+++..|.++. ..+..++.+++|..+.+|..+....... ++
T Consensus 359 ~i------------------------i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~----------~~ 404 (775)
T KOG0319|consen 359 QI------------------------IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL----------CV 404 (775)
T ss_pred EE------------------------EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhh----------hh
Confidence 32 234444555554 4455778888999999877632211100 00
Q ss_pred eeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCC-cEEEEeecCCccceeeeccccc------
Q 002753 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDK------ 252 (884)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG-~~~~~~~~d~~i~~w~~~~~~~------ 252 (884)
....+|...|..++. +..| ..+++++.|.++++|+....+.
T Consensus 405 ----------------------a~~~gH~~svgava~----------~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~ 452 (775)
T KOG0319|consen 405 ----------------------AQANGHTNSVGAVAG----------SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIV 452 (775)
T ss_pred ----------------------hhhcccccccceeee----------cccCccEEEEecCCceEEEecCCCcccccccce
Confidence 111345555655553 2222 3677888999999998776211
Q ss_pred c------cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEE
Q 002753 253 E------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (884)
Q Consensus 253 ~------~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 325 (884)
+ ..|.+-+. ++++|+.++||||++|.+.+||+++. .....++++ |+..|.|+.|+|..+.+|++
T Consensus 453 ~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsG--------H~RGvw~V~Fs~~dq~laT~ 523 (775)
T KOG0319|consen 453 LTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSG--------HTRGVWCVSFSKNDQLLATC 523 (775)
T ss_pred ehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEeeC--------CccceEEEEeccccceeEec
Confidence 1 35877776 99999999999999999999999997 888889999 99999999999999999999
Q ss_pred EcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee-
Q 002753 326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF- 401 (884)
Q Consensus 326 ~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~- 401 (884)
+.|++|+||++.+..++.++.|| .++|.-+.|-.++ ..++|+. .+++|+..++++..++.+|.++||+++-
T Consensus 524 SgD~TvKIW~is~fSClkT~eGH-~~aVlra~F~~~~----~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 524 SGDKTVKIWSISTFSCLKTFEGH-TSAVLRASFIRNG----KQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred cCCceEEEEEeccceeeeeecCc-cceeEeeeeeeCC----cEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeec
Confidence 99999999999999999999999 7889888898887 7787775 8999999999999999999999999987
Q ss_pred --cceeecccCCCCceeee
Q 002753 402 --GKCCLNRGVSGMTYARQ 418 (884)
Q Consensus 402 --~~~~~s~~~d~~~~~w~ 418 (884)
...++||+.|+.+.+|.
T Consensus 599 ~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 599 PLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred CccceeEecCCCeEEEEee
Confidence 55778999999998886
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=3.3e-25 Score=226.38 Aligned_cols=265 Identities=14% Similarity=0.206 Sum_probs=221.0
Q ss_pred EEEEcCCcEEEEeecCCccceeeecccc---cccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeecc
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~---~~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~ 299 (884)
+..+|+||.+++++..|...+|++.... .+..|..+|+ +.|++++.++++|..+|.|++|+... ..++.+..
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~~~a-- 177 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKIIQA-- 177 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhHHhhH--
Confidence 3358999999999999999999986432 2378999998 99999999999999999999999875 45555555
Q ss_pred CCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeE
Q 002753 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~ 376 (884)
.|...|++++|||....++++++||+|+|||..-.+....|.+|+ -.|.+++++|.. ..+++|+ .++
T Consensus 178 -----hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg-wdVksvdWHP~k----gLiasgskDnlVK 247 (464)
T KOG0284|consen 178 -----HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG-WDVKSVDWHPTK----GLIASGSKDNLVK 247 (464)
T ss_pred -----hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC-CCcceeccCCcc----ceeEEccCCceeE
Confidence 155899999999999999999999999999998888888889984 579999999987 7888887 899
Q ss_pred EEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCC
Q 002753 377 QWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (884)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~ 453 (884)
+||+++++++.++.+|...|..+.| +..++|+|.|..+++.|+...++ ...+.+|..
T Consensus 248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--------------------l~~~r~Hkk 307 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--------------------LFTYRGHKK 307 (464)
T ss_pred eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH--------------------HHHhhcchh
Confidence 9999999999999999999987777 78999999999999999875554 567889999
Q ss_pred ceEEEEEccC-CCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEe--CCEEEEEEEecCCCeEEEEEeeCC
Q 002753 454 PVQHVAASKD-GMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (884)
Q Consensus 454 ~I~~va~S~d-G~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~lv~~~~~~~~~~~elr~y~~~ 529 (884)
.|++++|+|- ...+++||.||.+ +|.+...+ -.......++..|..|.|. |++|..| +.+..+|+|.|.
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tg-----snd~t~rfw~r~ 380 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATG-----SNDRTVRFWTRN 380 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeec-----CCCcceeeeccC
Confidence 9999999997 5688899999999 99886321 2223333444568899997 4555554 566889999996
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=3.1e-25 Score=226.63 Aligned_cols=277 Identities=16% Similarity=0.185 Sum_probs=216.0
Q ss_pred cceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEE--eecCCeE
Q 002753 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHM 145 (884)
Q Consensus 68 G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~l 145 (884)
-.+..|.|.|+|+.|.+|+..|.+.+|+.. .+.+......++..|+++ +.++..+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~-----------------------~fnFEtilQaHDs~Vr~m~ws~~g~wm 153 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGT-----------------------SFNFETILQAHDSPVRTMKWSHNGTWM 153 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCc-----------------------eeeHHHHhhhhcccceeEEEccCCCEE
Confidence 445689999999999999999999999863 222233345666667665 5667888
Q ss_pred EEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEE
Q 002753 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (884)
Q Consensus 146 lv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (884)
+.|..+|.|.. |+...+... ..-..++..|++++|
T Consensus 154 iSgD~gG~iKy--WqpnmnnVk----------------------------------~~~ahh~eaIRdlaf--------- 188 (464)
T KOG0284|consen 154 ISGDKGGMIKY--WQPNMNNVK----------------------------------IIQAHHAEAIRDLAF--------- 188 (464)
T ss_pred EEcCCCceEEe--cccchhhhH----------------------------------HhhHhhhhhhheecc---------
Confidence 88888889887 655443211 001223466877775
Q ss_pred EEcCCcEEEEeecCCccceeeeccccc---ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCC
Q 002753 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (884)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~~---~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~ 301 (884)
+|+...++++++|+++++||...++. +.||.--+. ++|+|...+||+|+.|..|++||.++ ++++.++.+
T Consensus 189 -SpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~---- 262 (464)
T KOG0284|consen 189 -SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHG---- 262 (464)
T ss_pred -CCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhh----
Confidence 67777788899999999999987654 378876554 99999999999999999999999999 899999998
Q ss_pred CCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEecC
Q 002753 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEY 381 (884)
Q Consensus 302 ~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~ 381 (884)
|+..|..+.|+|+|.+|+++++|..++++|+...+.+.++++| ...|.++.++|-. +.
T Consensus 263 ----HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H-kkdv~~~~WhP~~----~~------------- 320 (464)
T KOG0284|consen 263 ----HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH-KKDVTSLTWHPLN----ES------------- 320 (464)
T ss_pred ----ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc-hhhheeecccccc----cc-------------
Confidence 9999999999999999999999999999999988888888888 6667777776654 11
Q ss_pred CceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEc
Q 002753 382 GYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS 461 (884)
Q Consensus 382 ~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S 461 (884)
.+.+|+.|+.+..|.+..... ++.--.+|...|+++++.
T Consensus 321 ----------------------lftsgg~Dgsvvh~~v~~~~p-------------------~~~i~~AHd~~iwsl~~h 359 (464)
T KOG0284|consen 321 ----------------------LFTSGGSDGSVVHWVVGLEEP-------------------LGEIPPAHDGEIWSLAYH 359 (464)
T ss_pred ----------------------ceeeccCCCceEEEecccccc-------------------ccCCCcccccceeeeecc
Confidence 235677888888887652221 123334788999999999
Q ss_pred cCCCEEEEEeCCceE-EEEcc
Q 002753 462 KDGMFLAVAGLHGLI-LYDIR 481 (884)
Q Consensus 462 ~dG~~lavag~dg~i-iwd~~ 481 (884)
|=|..||+|+.|..+ .|...
T Consensus 360 PlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 360 PLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccceeEeecCCCcceeeeccC
Confidence 999999999999999 88753
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.6e-24 Score=226.83 Aligned_cols=354 Identities=14% Similarity=0.107 Sum_probs=256.0
Q ss_pred cceeEEEEe--ecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCC
Q 002753 131 KGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS 208 (884)
Q Consensus 131 ~~~~v~~i~--~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 208 (884)
+..+|+++. +..-.++++..+|.+++|..+.+.-
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-------------------------------------------- 47 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-------------------------------------------- 47 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEeccccee--------------------------------------------
Confidence 455677764 4446788899999999966543321
Q ss_pred ccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEE
Q 002753 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYD 284 (884)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~ 284 (884)
|.+++.+......+.+-+-...+++|++|..+++++..+.++. ..|.+-++ ++++|...++.+++.|-+|++||
T Consensus 48 --VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~ 125 (794)
T KOG0276|consen 48 --VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWD 125 (794)
T ss_pred --eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEee
Confidence 2222222222233444566677888899999999988887765 67999887 99999999999999999999999
Q ss_pred ccCCCcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCC
Q 002753 285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (884)
Q Consensus 285 ~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~ 363 (884)
.+....+.+++.+ |+.-|.+++|.| |.+.+|+++-|++|+||++....+..|+.+| ...|+++.+-+.+
T Consensus 126 we~~wa~~qtfeG--------H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~g- 195 (794)
T KOG0276|consen 126 WENEWACEQTFEG--------HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGG- 195 (794)
T ss_pred ccCceeeeeEEcC--------cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEeccCC-
Confidence 9986788899999 999999999999 7889999999999999999999999999998 7889999998776
Q ss_pred CCccceeecc---eeEEEecCCceEEEEecCCcceEEEE--ee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCce
Q 002753 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL 437 (884)
Q Consensus 364 ~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~--~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~ 437 (884)
.+..+++|+ ++++||..+..++.+++||...|... .+ -..++|||.||++++|.-.+-..
T Consensus 196 -dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l------------- 261 (794)
T KOG0276|consen 196 -DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL------------- 261 (794)
T ss_pred -CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh-------------
Confidence 336788887 99999999999999999999998444 44 56789999999999998543221
Q ss_pred eEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEEEecCccceeeeEEE-EEEEeCCEEEEEEEec
Q 002753 438 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSK-GLLWLGKIIVVCNYID 516 (884)
Q Consensus 438 ~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~iiwd~~s~~w~~f~~~~~e~~~~v~-~~~W~~~~lv~~~~~~ 516 (884)
-.++.-.-..|+|++-.+.++.+|+|.+.|.+.-++ +.+...-.|... .+.|..+.-|.+....
T Consensus 262 -------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l--------greeP~vsMd~~gKIiwa~~~ei~~~~~k 326 (794)
T KOG0276|consen 262 -------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL--------GREEPAVSMDSNGKIIWAVHSEIQAVNLK 326 (794)
T ss_pred -------hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc--------cCCCCceeecCCccEEEEcCceeeeeece
Confidence 223333346799999999999999999999886554 233333334433 4888766555442221
Q ss_pred CCC-eEEEEEeeCCCCCCcceEEEEecCCccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002753 517 SSN-TYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (884)
Q Consensus 517 ~~~-~~elr~y~~~~l~~~~~l~~~~~~~~~~~~~~~~~~llv~~~~~~i~i~~~~ 571 (884)
..+ ..++.=-.|-.|.-..+....-+| +.+..++++..++| |.||+.+||.-.
T Consensus 327 s~~~~~ev~DgErL~LsvKeLgs~eiyP-q~L~hsPNGrfV~V-cgdGEyiIyTal 380 (794)
T KOG0276|consen 327 SVGAQKEVTDGERLPLSVKELGSVEIYP-QTLAHSPNGRFVVV-CGDGEYIIYTAL 380 (794)
T ss_pred eccCcccccCCccccchhhhccccccch-HHhccCCCCcEEEE-ecCccEEEEEee
Confidence 111 112211111112111222222233 36777888877777 789999999643
No 26
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=4.7e-22 Score=217.14 Aligned_cols=280 Identities=13% Similarity=0.129 Sum_probs=214.1
Q ss_pred CCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc-
Q 002753 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE- 253 (884)
Q Consensus 175 ~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~- 253 (884)
+..-++...++.++.+..+. .+....+|......+|..+.-. ......+.|.++.+++|...|.+.+++.......
T Consensus 372 HR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E 448 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVE 448 (888)
T ss_pred chhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence 33445555555555432222 2233445545545666665532 3455667788999999999999999888765433
Q ss_pred --cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCC----CcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEE
Q 002753 254 --LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (884)
Q Consensus 254 --~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~----~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (884)
..|..++. ++.+||++.+++|+.|.+|++||..-. +...+.++.++- ..-.-+..|.|+++||||++||+|-
T Consensus 449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~-rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT-RTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc-eEEeccccEEEEEEcCCCcEEEEEe
Confidence 68999999 999999999999999999999997521 111111221100 0001256799999999999999999
Q ss_pred cCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee--
Q 002753 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-- 401 (884)
Q Consensus 327 ~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-- 401 (884)
-|++++||-+.+-+.+-+|.|| .=+|.++..+|++ ..+++|+ ++++|..+=|.+-..+-+|++.|..+.|
T Consensus 528 LdnTVkVyflDtlKFflsLYGH-kLPV~smDIS~DS----klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P 602 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLSLYGH-KLPVLSMDISPDS----KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP 602 (888)
T ss_pred ccCeEEEEEecceeeeeeeccc-ccceeEEeccCCc----CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence 9999999999999999999999 7789999999999 8889888 9999999999998888899999966666
Q ss_pred -cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEE
Q 002753 402 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (884)
Q Consensus 402 -~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd 479 (884)
...+.+++.|+.++.||-..-. ..+++.+|...|+|+|.+|+|.+++++|.|..+ +|.
T Consensus 603 ~~~~FFt~gKD~kvKqWDg~kFe--------------------~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 603 KTHLFFTCGKDGKVKQWDGEKFE--------------------EIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred cceeEEEecCcceEEeechhhhh--------------------hheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 5577899999999999843222 256788999999999999999999999999999 998
Q ss_pred ccCC
Q 002753 480 IRQK 483 (884)
Q Consensus 480 ~~s~ 483 (884)
....
T Consensus 663 ~tde 666 (888)
T KOG0306|consen 663 RTDE 666 (888)
T ss_pred ccCc
Confidence 7543
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=6.1e-23 Score=213.50 Aligned_cols=252 Identities=14% Similarity=0.170 Sum_probs=195.0
Q ss_pred eEEEEEecCeEEEEEc-cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCc
Q 002753 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (884)
Q Consensus 23 ~vv~fspdg~lla~~t-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~ 101 (884)
-.++.|-+|++||++. ++.++||+.. +.++.. .. .+.|++.+++|+.+|.+|++++-||++.+||...+..
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~--G~l~~t----l~--~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKD--GNLIST----LG--QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecC--chhhhh----hh--ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 3478889999999996 6789999984 333222 22 2569999999999999999999999999999976655
Q ss_pred eeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCcccee
Q 002753 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (884)
Q Consensus 102 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~ 181 (884)
.+.+..+..+++.+. -.+++.++++..+|.|+++..+.....
T Consensus 311 ~q~f~~~s~~~lDVd----------------------W~~~~~F~ts~td~~i~V~kv~~~~P~---------------- 352 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVD----------------------WQSNDEFATSSTDGCIHVCKVGEDRPV---------------- 352 (524)
T ss_pred EEeeeeccCCccceE----------------------EecCceEeecCCCceEEEEEecCCCcc----------------
Confidence 544433333221110 113567788888999988876543211
Q ss_pred ecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccc---cccCCCC
Q 002753 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGD 258 (884)
Q Consensus 182 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~---~~~~h~~ 258 (884)
..+.+|...|..|.| .|.|.+++++++|+|+++|+..... .+.+|++
T Consensus 353 --------------------~t~~GH~g~V~alk~----------n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk 402 (524)
T KOG0273|consen 353 --------------------KTFIGHHGEVNALKW----------NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK 402 (524)
T ss_pred --------------------eeeecccCceEEEEE----------CCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc
Confidence 234568889999998 5779999999999999999865443 3467887
Q ss_pred cEE-EEEcCCC---------CEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC
Q 002753 259 AVC-ASIAPEQ---------QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (884)
Q Consensus 259 ~v~-va~sp~~---------~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d 328 (884)
.+. +.|+|+| ..+|+++.|++|++||+.. +.++.++.. |+.+|.+++|||||+++|+|+.|
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~k--------H~~pVysvafS~~g~ylAsGs~d 473 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMK--------HQEPVYSVAFSPNGRYLASGSLD 473 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeecc--------CCCceEEEEecCCCcEEEecCCC
Confidence 776 8999864 4799999999999999998 899999888 99999999999999999999999
Q ss_pred CcEEEEeccCCeeEEEeccccccceeeeeecCC
Q 002753 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (884)
Q Consensus 329 g~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~ 361 (884)
|.|.+|++..++++++..+. +.|..+.|+.+
T Consensus 474 g~V~iws~~~~~l~~s~~~~--~~Ifel~Wn~~ 504 (524)
T KOG0273|consen 474 GCVHIWSTKTGKLVKSYQGT--GGIFELCWNAA 504 (524)
T ss_pred CeeEeccccchheeEeecCC--CeEEEEEEcCC
Confidence 99999999999999888763 33444444333
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=3.4e-23 Score=198.92 Aligned_cols=225 Identities=16% Similarity=0.203 Sum_probs=181.9
Q ss_pred EEcCCcEEEEeecCCccceeeeccccc-----ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeecc
Q 002753 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (884)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~~-----~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~ 299 (884)
++||++.++++... .++++|..+... ..+|.+-|. +.|..+|+++.+|++||++||||++. ..+-+.++
T Consensus 48 iTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~qR~~~--- 122 (311)
T KOG0315|consen 48 ITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSCQRNYQ--- 122 (311)
T ss_pred EcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC-cccchhcc---
Confidence 68999988876654 578888776543 267877776 99999999999999999999999987 44444333
Q ss_pred CCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeE
Q 002753 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~ 376 (884)
|..+|+++...|+-.-|++|..+|.|++||+....+.+.+.-.....++++...|+| ..++.+. +..
T Consensus 123 ------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg----sml~a~nnkG~cy 192 (311)
T KOG0315|consen 123 ------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG----SMLAAANNKGNCY 192 (311)
T ss_pred ------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC----cEEEEecCCccEE
Confidence 789999999999999999999999999999998887777765445689999999998 6665443 889
Q ss_pred EEecCCce------EEEEecCCcceE--EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccc
Q 002753 377 QWDEYGYR------LYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (884)
Q Consensus 377 ~W~~~~~~------l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~ 447 (884)
+|+.-+.+ .+..++.|.+.+ ..+++ +|.++++|.|.++++|....- +++-..
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-------------------~kle~~ 253 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-------------------FKLELV 253 (311)
T ss_pred EEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-------------------eeeEEE
Confidence 99876532 233456677777 44566 999999999999999985432 122446
Q ss_pred cccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002753 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 448 ~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~ 484 (884)
+.+|+..++.++||.||+||++|+.|+.+ +|++..++
T Consensus 254 l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 254 LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred eecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 77999999999999999999999999999 99999886
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.2e-21 Score=209.61 Aligned_cols=251 Identities=14% Similarity=0.163 Sum_probs=197.1
Q ss_pred cceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEE--EEeecCCeE
Q 002753 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHM 145 (884)
Q Consensus 68 G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~l 145 (884)
..++++.+.|--..+..+--+|.+.||+.++..-. .++ ...+.+|+ .|....+.+
T Consensus 14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV-------------ksf----------eV~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV-------------KSF----------EVSEVPVRAAKFIARKNWI 70 (794)
T ss_pred CceeeeecCCCCceEEEeeecCeeEEEecccceee-------------eee----------eecccchhhheeeeccceE
Confidence 55789999999999999999999999998743311 111 11122222 234446789
Q ss_pred EEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEE
Q 002753 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (884)
Q Consensus 146 lv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (884)
++|++|..|+++..+..... ..+..|...|++++
T Consensus 71 v~GsDD~~IrVfnynt~ekV------------------------------------~~FeAH~DyIR~ia---------- 104 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKV------------------------------------KTFEAHSDYIRSIA---------- 104 (794)
T ss_pred EEecCCceEEEEecccceee------------------------------------EEeeccccceeeee----------
Confidence 99999999999876532110 11233445555555
Q ss_pred EEcCCcEEEEeecCCccceeeeccc----ccccCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEccCCCcceEEEeecc
Q 002753 226 LYSNGQLMSCSVSKKGLKLAEFIKI----DKELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (884)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~----~~~~~h~~~v~-va~sp-~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~ 299 (884)
+.|.--.++++++|.++++|+.... +...||+.-|. ++||| |.+.+|+||-|+||+||.+.. ..+..++.+
T Consensus 105 vHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g-- 181 (794)
T KOG0276|consen 105 VHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG-- 181 (794)
T ss_pred ecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec--
Confidence 6777888899999999999986542 22378999887 99999 578999999999999999987 677788998
Q ss_pred CCCCCCCCcCeEEEEECCCC--CEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---e
Q 002753 300 WGYSMDDTGPVSCIAWTPDN--SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg--~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~ 374 (884)
|...|+|+.+-|-| -+|++|++|.+++|||..+..|+.+|.+| .+.|+.+.|+|.- ..+++|+ +
T Consensus 182 ------HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH-t~Nvs~v~fhp~l----piiisgsEDGT 250 (794)
T KOG0276|consen 182 ------HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH-TNNVSFVFFHPEL----PIIISGSEDGT 250 (794)
T ss_pred ------cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-cccceEEEecCCC----cEEEEecCCcc
Confidence 99999999998855 59999999999999999999999999999 7889999999986 7788887 9
Q ss_pred eEEEecCCceEEEEecCCcceEEEEee
Q 002753 375 MMQWDEYGYRLYAIEEGSSERVLIFSF 401 (884)
Q Consensus 375 i~~W~~~~~~l~~~~~~~~~~v~~~~~ 401 (884)
+++|...++++..++.-.-+++|++..
T Consensus 251 vriWhs~Ty~lE~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 251 VRIWNSKTYKLEKTLNYGLERVWCIAA 277 (794)
T ss_pred EEEecCcceehhhhhhcCCceEEEEee
Confidence 999999999988777666678888774
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.91 E-value=7.8e-24 Score=211.53 Aligned_cols=272 Identities=14% Similarity=0.219 Sum_probs=219.4
Q ss_pred ceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccE
Q 002753 132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (884)
Q Consensus 132 ~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 211 (884)
...|.|+..|++.++.|..|.+|.+ ||....... ..+.+|.+.|
T Consensus 197 skgVYClQYDD~kiVSGlrDnTiki--WD~n~~~c~----------------------------------~~L~GHtGSV 240 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKI--WDKNSLECL----------------------------------KILTGHTGSV 240 (499)
T ss_pred CCceEEEEecchhhhcccccCceEE--eccccHHHH----------------------------------HhhhcCCCcE
Confidence 3458899999999999999999988 553332111 3356788888
Q ss_pred EEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccC
Q 002753 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE 287 (884)
Q Consensus 212 ~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~ 287 (884)
.++.| |.+++++|++|.++++||..+++.+ .+|.++|- +.|+ ..++++++.|.++++||+..
T Consensus 241 LCLqy------------d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 241 LCLQY------------DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred Eeeec------------cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC
Confidence 88776 4568999999999999999998876 68999887 8886 45899999999999999987
Q ss_pred CC--cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCC
Q 002753 288 SA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (884)
Q Consensus 288 ~~--~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~ 365 (884)
.. .+.+.+.+ |...|+.+.|+ .+++++++.|+++++|++.++..+.++.+| ...+.++.+ .+
T Consensus 307 ps~it~rrVLvG--------HrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gH-kRGIAClQY--r~--- 370 (499)
T KOG0281|consen 307 PTDITLRRVLVG--------HRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGH-KRGIACLQY--RD--- 370 (499)
T ss_pred chHHHHHHHHhh--------hhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcc-cccceehhc--cC---
Confidence 32 23346666 99999999985 459999999999999999999999999998 666666554 23
Q ss_pred ccceeecc---eeEEEecCCceEEEEecCCcceEEEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEE
Q 002753 366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (884)
Q Consensus 366 ~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~ 441 (884)
..++||+ ++++|+...+.++.+++||.+-|.++.| .+.+++|++||++++|++..+.+.-....
T Consensus 371 -rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~----------- 438 (499)
T KOG0281|consen 371 -RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPAS----------- 438 (499)
T ss_pred -eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCccccc-----------
Confidence 7788887 9999999999999999999999999999 88999999999999999987766100000
Q ss_pred eecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002753 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (884)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~ 483 (884)
--+...+..|.+.|..+.| |...+++++.|.++ +||...+
T Consensus 439 ~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 439 TLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred chHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 0012355678899999999 56788889999999 9998665
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.7e-23 Score=209.80 Aligned_cols=255 Identities=13% Similarity=0.107 Sum_probs=208.2
Q ss_pred EEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeecc
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~ 299 (884)
+++.|+--+.++++.|.+++.||..+++.. .||++++. ++|+..|+++|+++.|-.+++||.++..++++.+.+
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-- 191 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-- 191 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC--
Confidence 334566667777888999999998887653 79999998 999999999999999999999999874567777777
Q ss_pred CCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeE
Q 002753 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~ 376 (884)
|.-.|.+++|-|-|.++++++.|++|+.|++.++-++.++.+| ...|..++...|| ..+++++ ++.
T Consensus 192 ------h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h-~ewvr~v~v~~DG----ti~As~s~dqtl~ 260 (406)
T KOG0295|consen 192 ------HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH-SEWVRMVRVNQDG----TIIASCSNDQTLR 260 (406)
T ss_pred ------cccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc-hHhEEEEEecCCe----eEEEecCCCceEE
Confidence 8889999999999999999999999999999999999999998 6789999999888 8888887 899
Q ss_pred EEecCCceEEEEecCCcceE--EEEee-----------c-----ceeecccCCCCceeeeeeecCCeEEEEecCCCCcee
Q 002753 377 QWDEYGYRLYAIEEGSSERV--LIFSF-----------G-----KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (884)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v--~~~~~-----------~-----~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~ 438 (884)
+|-.++.++....++|.-.+ .++.+ + ..+.+++.|+++++|++..+..
T Consensus 261 vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-------------- 326 (406)
T KOG0295|consen 261 VWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-------------- 326 (406)
T ss_pred EEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE--------------
Confidence 99999998777777776555 22211 1 4778899999999999887754
Q ss_pred EEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEE
Q 002753 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVC 512 (884)
Q Consensus 439 w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~~ 512 (884)
..++.+|...|+.++|+|.|+||+++.+|+++ +||+++++.-. .-+.+|.=.++.++.=...++++|
T Consensus 327 ------L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk-~~~ah~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 327 ------LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK-TLEAHEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred ------EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee-ccCCCcceeEEEecCCCCceEEec
Confidence 56788999999999999999999999999999 99999987532 223455421222443334566665
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=2.9e-22 Score=228.17 Aligned_cols=267 Identities=17% Similarity=0.251 Sum_probs=219.0
Q ss_pred EEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEE
Q 002753 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (884)
Q Consensus 137 ~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~ 216 (884)
.|++++..++.++.++.+..+.+..... ... ..+.++...|.++.
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~---------------------------------~~l~~h~~~v~~~~- 210 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKS-NLL---------------------------------RELSGHTRGVSDVA- 210 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccc-hhh---------------------------------ccccccccceeeeE-
Confidence 4677888888888899998865522210 010 11134556677766
Q ss_pred cCCcceEEEEEcCCcEEEEeecCCccceeeeccc-cc---ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcc
Q 002753 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASL 291 (884)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~-~~---~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~ 291 (884)
+++||+++++++.|+++++|+.... .. +.+|...+. ++|+|+++++++|+.|++||+||+.+ +++
T Consensus 211 ---------fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~ 280 (456)
T KOG0266|consen 211 ---------FSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GEC 280 (456)
T ss_pred ---------ECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeE
Confidence 5899999999999999999999433 22 379999887 99999999999999999999999998 899
Q ss_pred eEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe--eEEEecccccc-ceeeeeecCCCCCCccc
Q 002753 292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLS-SISSPIVKPNQDCKYEP 368 (884)
Q Consensus 292 ~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~--l~~tl~~~~~~-~v~s~~~s~~~~~~~~~ 368 (884)
++.+.+ |.++|++++|++||+.|++++.|+.+++||+.++. +..++.++... .++++.|+|++ .+
T Consensus 281 ~~~l~~--------hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~----~~ 348 (456)
T KOG0266|consen 281 VRKLKG--------HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG----KY 348 (456)
T ss_pred EEeeec--------cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC----cE
Confidence 999999 99999999999999999999999999999999998 56777776344 68999999999 88
Q ss_pred eeecc---eeEEEecCCceEEEEecCCcceE---EEEe--e-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeE
Q 002753 369 LMSGT---SMMQWDEYGYRLYAIEEGSSERV---LIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (884)
Q Consensus 369 l~sg~---~i~~W~~~~~~l~~~~~~~~~~v---~~~~--~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w 439 (884)
++++. .+++|+...++......+|...+ .... . ++.+.+|+.|+.+.+|++..+..
T Consensus 349 ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~--------------- 413 (456)
T KOG0266|consen 349 LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI--------------- 413 (456)
T ss_pred EEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch---------------
Confidence 87776 89999999999998888887753 2222 1 78999999999999999876443
Q ss_pred EEeecccccccC-CCceEEEEEccCCCEEEEEe--CCceE-EEEc
Q 002753 440 LHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAG--LHGLI-LYDI 480 (884)
Q Consensus 440 ~~~~~p~~~~~~-~~~I~~va~S~dG~~lavag--~dg~i-iwd~ 480 (884)
...+.+| ...+..++++|...++++++ .|+.+ +|..
T Consensus 414 -----~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 414 -----LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred -----hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 5567788 88999999999999999999 78888 8865
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=3.6e-22 Score=227.38 Aligned_cols=267 Identities=15% Similarity=0.238 Sum_probs=211.8
Q ss_pred EEEEcCCcEEEEeecCCccceeeecccc-----cccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEee
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~-----~~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~ 297 (884)
+.+++||+.++.+..++.+++|+..... ...+|...+. ++|+|+++++++|+.|+++++||+...+..++++++
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 4579999999999899999999884443 1257888888 999999999999999999999999553688899998
Q ss_pred ccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---e
Q 002753 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (884)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~ 374 (884)
|+..|++++|+|+|+.+++|+.|++|++||+.++.+...+.+| .+.|++++|++++ ..+++++ .
T Consensus 245 --------H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-s~~is~~~f~~d~----~~l~s~s~d~~ 311 (456)
T KOG0266|consen 245 --------HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH-SDGISGLAFSPDG----NLLVSASYDGT 311 (456)
T ss_pred --------CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc-CCceEEEEECCCC----CEEEEcCCCcc
Confidence 9999999999999999999999999999999999999999999 7799999999999 8888877 8
Q ss_pred eEEEecCCce--EEEEecCCcce--E--EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccc
Q 002753 375 MMQWDEYGYR--LYAIEEGSSER--V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (884)
Q Consensus 375 i~~W~~~~~~--l~~~~~~~~~~--v--~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~ 447 (884)
+++||..+++ +.....++... + .+|++ ++.+++++.|+++++|++..+.. +..
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~--------------------~~~ 371 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS--------------------VGT 371 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc--------------------eee
Confidence 9999999999 45555555444 5 55555 99999999999999999876654 555
Q ss_pred cccCCC---ceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeC--CEEEEEEEecCCCeE
Q 002753 448 YISQNW---PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTY 521 (884)
Q Consensus 448 ~~~~~~---~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~--~~lv~~~~~~~~~~~ 521 (884)
+.+|.. .+.+...+++|+++.+|+.|+.+ +||+.++.-.. ..+.+ ..-.+..+.|.. ++++.+.. ..+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~-~l~~h-~~~~~~~~~~~~~~~~~~s~s~---~~d~ 446 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ-RLEGH-SKAAVSDLSSHPTENLIASSSF---EGDG 446 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh-hhcCC-CCCceeccccCCCcCeeeecCc---CCCc
Confidence 666655 45556668899999999999999 99999854211 11111 123356777764 33333311 2446
Q ss_pred EEEEeeC
Q 002753 522 ELLFYPR 528 (884)
Q Consensus 522 elr~y~~ 528 (884)
.+++|..
T Consensus 447 ~~~~w~~ 453 (456)
T KOG0266|consen 447 LIRLWKY 453 (456)
T ss_pred eEEEecC
Confidence 6777755
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.90 E-value=1.4e-21 Score=187.88 Aligned_cols=278 Identities=12% Similarity=0.208 Sum_probs=204.9
Q ss_pred eEEEEEc-cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCC
Q 002753 32 GLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQP 110 (884)
Q Consensus 32 ~lla~~t-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~ 110 (884)
-+||+++ |.+|++|.+. .+.- .|+..- ..+.+..+...||++.||++... .|++||+.+.+..
T Consensus 11 viLvsA~YDhTIRfWqa~-tG~C----~rTiqh--~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~-------- 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQAL-TGIC----SRTIQH--PDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN-------- 74 (311)
T ss_pred eEEEeccCcceeeeeehh-cCeE----EEEEec--CccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC--------
Confidence 3788886 7799999995 5432 332211 13567799999999999998765 5999999765431
Q ss_pred CCceeeeeeeeeecccccccc--ceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCC
Q 002753 111 SGLFFIKISLVLNEQLPFAEK--GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (884)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 188 (884)
++.+ +.++ +..+..|.+++..++.|++||.+++|+... ....
T Consensus 75 ---Pv~t----------~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~--~~~q--------------------- 118 (311)
T KOG0315|consen 75 ---PVAT----------FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--LSCQ--------------------- 118 (311)
T ss_pred ---ceeE----------EeccCCceEEEEEeecCeEEEecCCCceEEEEeccC--cccc---------------------
Confidence 1111 1122 223446788999999999999999854332 1111
Q ss_pred CcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc----cCCCCcEE-EE
Q 002753 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-AS 263 (884)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~~h~~~v~-va 263 (884)
..+.+.++|.++. +.|+..-++++-.++.+++||.....+- ......+. ++
T Consensus 119 --------------R~~~~~spVn~vv----------lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~ 174 (311)
T KOG0315|consen 119 --------------RNYQHNSPVNTVV----------LHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT 174 (311)
T ss_pred --------------hhccCCCCcceEE----------ecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE
Confidence 1123345666554 5677777788888899999998754221 33334555 99
Q ss_pred EcCCCCEEEEEecCCeEEEEEccCCC-----cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 002753 264 IAPEQQILAVGTRRGVVELYDLAESA-----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (884)
Q Consensus 264 ~sp~~~~la~g~~dg~v~lw~~~~~~-----~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~ 338 (884)
+.|||+.++.+-.-|++.+|++-... .++..++. |++-+..+.+|||+++||+++.|.+++||+..+
T Consensus 175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a--------h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA--------HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred EcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec--------ccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 99999999999999999999986521 22334444 999999999999999999999999999999998
Q ss_pred C-eeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEE
Q 002753 339 C-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI 398 (884)
Q Consensus 339 ~-~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~ 398 (884)
. ++..++.+| ...+...+||.++ +++++|+ ..++|++..++......+|....++
T Consensus 247 ~~kle~~l~gh-~rWvWdc~FS~dg----~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 247 FFKLELVLTGH-QRWVWDCAFSADG----EYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred ceeeEEEeecC-CceEEeeeeccCc----cEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence 8 666677777 7899999999999 9999887 8899999999988888887655443
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.89 E-value=5.1e-23 Score=205.71 Aligned_cols=256 Identities=11% Similarity=0.160 Sum_probs=209.1
Q ss_pred EcCCcEEEEeecCCccceeeecccccc---cCCCCcE-EEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCC
Q 002753 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (884)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v-~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~ 302 (884)
--|...+++|..|.++++||..+..+. .||++.| |+.| +.++|++|+.|.+|++||+++ ++++.++-.
T Consensus 204 QYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~t-ge~l~tlih----- 275 (499)
T KOG0281|consen 204 QYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNT-GEPLNTLIH----- 275 (499)
T ss_pred EecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccC-CchhhHHhh-----
Confidence 345566788999999999998876554 7898877 4666 667999999999999999999 899988887
Q ss_pred CCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe---eEEEeccccccceeeeeecCCCCCCccceeecc---eeE
Q 002753 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (884)
Q Consensus 303 ~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~---l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~ 376 (884)
|...|..+.|+. .++++++.|.+++||++.... +...+.|| ..+|+.+.|+. .++++++ +++
T Consensus 276 ---HceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd~------kyIVsASgDRTik 343 (499)
T KOG0281|consen 276 ---HCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFDD------KYIVSASGDRTIK 343 (499)
T ss_pred ---hcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeecccc------ceEEEecCCceEE
Confidence 999999999974 589999999999999997654 34456777 78899988842 4666555 999
Q ss_pred EEecCCceEEEEecCCcceEEEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCce
Q 002753 377 QWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (884)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I 455 (884)
+|+..+++++.++.+|...|.++.+ ++.+++||.|+++++|++..|.. ...+.||..-|
T Consensus 344 vW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~c--------------------LRvLeGHEeLv 403 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--------------------LRVLEGHEELV 403 (499)
T ss_pred EEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHH--------------------HHHHhchHHhh
Confidence 9999999999999999999999999 99999999999999999887765 67788999999
Q ss_pred EEEEEccCCCEEEEEeCCceE-EEEccCCcEEE------ecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 002753 456 QHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV------FGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 456 ~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~------f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~ 528 (884)
+++.|. .+.+++|+.||.+ +||++++.=.. .-....|+...|.++++..--+|++ +.+++|.+|++
T Consensus 404 RciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvss-----sHddtILiWdF 476 (499)
T KOG0281|consen 404 RCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISS-----SHDDTILIWDF 476 (499)
T ss_pred hheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEec-----cCCCeEEEEEc
Confidence 999994 5789999999999 99998864210 0111223444577888777777776 45688999988
Q ss_pred C
Q 002753 529 Y 529 (884)
Q Consensus 529 ~ 529 (884)
.
T Consensus 477 l 477 (499)
T KOG0281|consen 477 L 477 (499)
T ss_pred C
Confidence 5
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=6.6e-23 Score=196.82 Aligned_cols=236 Identities=18% Similarity=0.212 Sum_probs=195.0
Q ss_pred ccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc--cCCCCcEE-EEEcCCCCEEEEEecCCeE
Q 002753 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVV 280 (884)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~~h~~~v~-va~sp~~~~la~g~~dg~v 280 (884)
+.+|++.|.+.. +..|....++++.|.+.++||..++..+ ..|...|. ++|+.|.+.|.+|+.+..+
T Consensus 55 feghkgavw~~~----------l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekll 124 (334)
T KOG0278|consen 55 FEGHKGAVWSAT----------LNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLL 124 (334)
T ss_pred eeccCcceeeee----------cCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHh
Confidence 356777775433 3456666778889999999999988776 57888888 9999999999999999999
Q ss_pred EEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC
Q 002753 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (884)
Q Consensus 281 ~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~ 360 (884)
||||++........+.+ |++.|+.+-|....+++.++.+|++||+||..++..++++.- .+.|+++.+++
T Consensus 125 rvfdln~p~App~E~~g--------htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEvs~ 194 (334)
T KOG0278|consen 125 RVFDLNRPKAPPKEISG--------HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEVSQ 194 (334)
T ss_pred hhhhccCCCCCchhhcC--------CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec--CCCCcceeecc
Confidence 99999875555566677 999999999999888999989999999999999999999976 46799999999
Q ss_pred CCCCCccce--eecceeEEEecCCceEEEEecCCcceE--EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCC
Q 002753 361 NQDCKYEPL--MSGTSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (884)
Q Consensus 361 ~~~~~~~~l--~sg~~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~ 435 (884)
++ +.+ +.|+++++|++.+..++..... .-.| ..+.+ -..++.|+.|+.++.+|..++.+
T Consensus 195 dG----~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE----------- 258 (334)
T KOG0278|consen 195 DG----RILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE----------- 258 (334)
T ss_pred CC----CEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCce-----------
Confidence 98 554 5567999999999888776543 3344 34555 44678899999998888888776
Q ss_pred ceeEEEeeccccc-ccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002753 436 ELKILHLNLPVSY-ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 436 ~~~w~~~~~p~~~-~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~ 484 (884)
...| .+|-+||.|+.|||||...|+|+.||++ +|.+..++
T Consensus 259 ---------i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 259 ---------IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ---------eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 2334 7899999999999999999999999999 99987664
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.2e-20 Score=203.39 Aligned_cols=266 Identities=13% Similarity=0.181 Sum_probs=220.3
Q ss_pred EEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEE
Q 002753 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (884)
Q Consensus 137 ~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~ 216 (884)
+|.+.+-.++++..+|.|+.|++. ...-. ..+.+|+++|+.+.|
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYR--M~tli----------------------------------~rFdeHdGpVRgv~F 59 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYR--MGTLI----------------------------------DRFDEHDGPVRGVDF 59 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhh--hhhHH----------------------------------hhhhccCCccceeee
Confidence 456667889999999999985543 21111 234678899998886
Q ss_pred cCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcce
Q 002753 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLI 292 (884)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~ 292 (884)
.|++.+++++++|..+++|+....+++ .||-+-++ +.|++...+|.++|.|.|||||+..+ ..++
T Consensus 60 ----------H~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-r~~i 128 (1202)
T KOG0292|consen 60 ----------HPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-RKCI 128 (1202)
T ss_pred ----------cCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-CceE
Confidence 678889999999999999998877665 79999998 99999999999999999999999998 8999
Q ss_pred EEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe---------------------e--------EE
Q 002753 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---------------------L--------MS 343 (884)
Q Consensus 293 ~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~---------------------l--------~~ 343 (884)
..+.+ |.--|.|.+|.|....+++|+-|.+|||||+.|-+ + ..
T Consensus 129 avltG--------HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 129 AVLTG--------HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred EEEec--------CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 99999 99999999999999999999999999999985421 1 12
Q ss_pred EeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEE--EecCCcceE--EEEee-cceeecccCCCCce
Q 002753 344 TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA--IEEGSSERV--LIFSF-GKCCLNRGVSGMTY 415 (884)
Q Consensus 344 tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~--~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~ 415 (884)
.+.|| ...|+.++|+|.- ..++||+ .+++|.....+.|- +..||.+.| +.|.+ ...++|.|.|++++
T Consensus 201 VLEGH-DRGVNwaAfhpTl----pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksir 275 (1202)
T KOG0292|consen 201 VLEGH-DRGVNWAAFHPTL----PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIR 275 (1202)
T ss_pred eeccc-ccccceEEecCCc----ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEE
Confidence 34566 6789999999987 7888888 89999998888775 467899888 44455 67889999999999
Q ss_pred eeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceEEEEccC
Q 002753 416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQ 482 (884)
Q Consensus 416 ~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~iiwd~~s 482 (884)
+|++..... .+++...+...+.+|..|.++.+|.|-+.|.++|-++.
T Consensus 276 VwDm~kRt~--------------------v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 276 VWDMTKRTS--------------------VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred EEecccccc--------------------eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcc
Confidence 999865443 45677778899999999999999988888877887753
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.89 E-value=1.7e-21 Score=196.03 Aligned_cols=274 Identities=14% Similarity=0.191 Sum_probs=217.8
Q ss_pred cCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeE
Q 002753 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVV 280 (884)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v 280 (884)
.+|.+-|.+++ +.|-.+.+++++.|+++++||..+++.. .||-..+. +++|+...++.+++.|++|
T Consensus 148 ~gHlgWVr~va----------vdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 148 SGHLGWVRSVA----------VDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred hhccceEEEEe----------eCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 34555666666 4677788999999999999999988754 68888888 9999999999999999999
Q ss_pred EEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC
Q 002753 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (884)
Q Consensus 281 ~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~ 360 (884)
+.||+.. .+.++...+ |-..|.|++..|.-..|++|+.|.+++|||+.+...+.++.+| .+.|.++.+.|
T Consensus 218 KCwDLe~-nkvIR~YhG--------HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~ 287 (460)
T KOG0285|consen 218 KCWDLEY-NKVIRHYHG--------HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQP 287 (460)
T ss_pred EEEechh-hhhHHHhcc--------ccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeec
Confidence 9999998 788888888 9999999999999999999999999999999999999999999 88999999988
Q ss_pred CCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCC
Q 002753 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (884)
Q Consensus 361 ~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~ 434 (884)
.+ ..+.+|+ ++++||...++-..+...|...+.++.. ...++++|.|+ ++.|.+..+.-
T Consensus 288 ~d----pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f---------- 352 (460)
T KOG0285|consen 288 TD----PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEF---------- 352 (460)
T ss_pred CC----CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccch----------
Confidence 87 6778887 9999999999998888888888855554 35667777765 66788766543
Q ss_pred CceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEec-Cccc----eeeeEEEEEEEe--C
Q 002753 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG-DITQ----EQKIQSKGLLWL--G 506 (884)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~-~~~~----e~~~~v~~~~W~--~ 506 (884)
...+.+|+..|.+++...|| ++++|+++|.+ .||..+|--..+. ...| |.+--|...++. +
T Consensus 353 ----------~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg 421 (460)
T KOG0285|consen 353 ----------LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG 421 (460)
T ss_pred ----------hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence 44577899999999999887 67789999999 9999988533322 1111 111113333332 4
Q ss_pred CEEEEEEEecCCCeEEEEEeeCC
Q 002753 507 KIIVVCNYIDSSNTYELLFYPRY 529 (884)
Q Consensus 507 ~~lv~~~~~~~~~~~elr~y~~~ 529 (884)
--||.| ..+-.|.+|..+
T Consensus 422 ~rlit~-----eadKtIk~~keD 439 (460)
T KOG0285|consen 422 SRLITG-----EADKTIKMYKED 439 (460)
T ss_pred ceEEec-----cCCcceEEEecc
Confidence 456665 344567888764
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.89 E-value=2e-21 Score=195.46 Aligned_cols=275 Identities=11% Similarity=0.161 Sum_probs=216.2
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEE
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~ 332 (884)
.+|.+.|. +++.|...++|+|+.|++++|||+.+ +++..++.+ |...|..+++|+---+|+++++|+.|+
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltG--------hi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTG--------HIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecc--------hhheeeeeeecccCceEEEecCCCeeE
Confidence 68999997 99999999999999999999999999 888889988 999999999999999999999999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee---cceee
Q 002753 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL 406 (884)
Q Consensus 333 vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~ 406 (884)
.||+..++.+....+| .+.|.+++.+|.. +.+++|+ ++++||.++..-+.++.||...|..+-+ ...++
T Consensus 219 CwDLe~nkvIR~YhGH-lS~V~~L~lhPTl----dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGH-LSGVYCLDLHPTL----DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred EEechhhhhHHHhccc-cceeEEEeccccc----eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 9999999999999888 8999999999988 8888886 8999999999999999999999844433 56889
Q ss_pred cccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEE
Q 002753 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR 486 (884)
Q Consensus 407 s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~iiwd~~s~~w~ 486 (884)
++|.|+++++||+..+.. ..++..|+..|++++..|+...+|+||.|.+-.|++-.|..
T Consensus 294 t~S~D~tvrlWDl~agkt--------------------~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f- 352 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKT--------------------MITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEF- 352 (460)
T ss_pred EecCCceEEEeeeccCce--------------------eEeeecccceeeEEecCCchhhhhccCCccceeccCCccch-
Confidence 999999999999998877 34677899999999999999999999999977999987752
Q ss_pred EecCccceeeeEEEEEEEeC-CEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEEecCC-----ccEEEEccC---CEEE
Q 002753 487 VFGDITQEQKIQSKGLLWLG-KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA-----KPIVMDVYE---DYIL 557 (884)
Q Consensus 487 ~f~~~~~e~~~~v~~~~W~~-~~lv~~~~~~~~~~~elr~y~~~~l~~~~~l~~~~~~~-----~~~~~~~~~---~~ll 557 (884)
..|.. ++.-.+..+.-+. +++++| .....+-+|+...-.+-+.+....-|. .-+..++++ ..|+
T Consensus 353 -~~nls-gh~~iintl~~nsD~v~~~G-----~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 353 -LQNLS-GHNAIINTLSVNSDGVLVSG-----GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred -hhccc-cccceeeeeeeccCceEEEc-----CCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 23322 2222344666664 455555 334567777764222322332222222 123444433 2355
Q ss_pred EEEcCCeEEEEEE
Q 002753 558 VTYRPFDVHIFHV 570 (884)
Q Consensus 558 v~~~~~~i~i~~~ 570 (884)
.+-+|..|.+|+-
T Consensus 426 t~eadKtIk~~ke 438 (460)
T KOG0285|consen 426 TGEADKTIKMYKE 438 (460)
T ss_pred eccCCcceEEEec
Confidence 5556777888753
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.2e-21 Score=194.96 Aligned_cols=237 Identities=14% Similarity=0.153 Sum_probs=201.2
Q ss_pred ccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccc-cc---ccCCCCcEE-EEEcCCCCEEEEEecCC
Q 002753 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DK---ELGSGDAVC-ASIAPEQQILAVGTRRG 278 (884)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~-~~---~~~h~~~v~-va~sp~~~~la~g~~dg 278 (884)
+.++...+.++.| +..|+++++++.|-.+++|+.... ++ ..+|+..+. +.|-|.|.+|++++.|.
T Consensus 146 LrGHt~sv~di~~----------~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ 215 (406)
T KOG0295|consen 146 LRGHTDSVFDISF----------DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN 215 (406)
T ss_pred hhccccceeEEEE----------ecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccccc
Confidence 4556666777775 677899999999988999998763 22 268888887 99999999999999999
Q ss_pred eEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeee
Q 002753 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (884)
Q Consensus 279 ~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~ 358 (884)
+|+.|++++ +-++.++.+ |...|..++.+.||..+|+++.|.++++|-+.++.+...+++| ...|..++|
T Consensus 216 tik~We~~t-g~cv~t~~~--------h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~w 285 (406)
T KOG0295|consen 216 TIKAWECDT-GYCVKTFPG--------HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAW 285 (406)
T ss_pred ceeEEeccc-ceeEEeccC--------chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEe
Confidence 999999999 889999998 9999999999999999999999999999999999888888887 667777777
Q ss_pred cCCCC----------CC-ccceeecc---eeEEEecCCceEEEEecCCcceE--EEEee-cceeecccCCCCceeeeeee
Q 002753 359 KPNQD----------CK-YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIY 421 (884)
Q Consensus 359 s~~~~----------~~-~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~l~~ 421 (884)
-|... .+ .+.+.+++ ++++|+..++.++.++.+|.+.| .+|++ |++++++..|+++++|++.+
T Consensus 286 ap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 286 APESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred cccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 65432 01 13566666 89999999999999999999999 66666 99999999999999999877
Q ss_pred cCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002753 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 422 ~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~ 480 (884)
... ..++..|..-+.++.|..+-.++++|+-|..+ +|..
T Consensus 366 ~~c--------------------mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 366 LQC--------------------MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cee--------------------eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 654 33444677789999999999999999999999 8863
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.88 E-value=1.6e-20 Score=189.98 Aligned_cols=317 Identities=11% Similarity=0.118 Sum_probs=233.6
Q ss_pred hccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEe--ecCC
Q 002753 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDNK 143 (884)
Q Consensus 66 ~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~--~~~~ 143 (884)
+.+++.+++.+|+.+.+|+++.|..-.+|++..+... ..+.++..+|+|+. .++.
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----------------------~eltgHKDSVt~~~Fshdgt 119 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----------------------GELTGHKDSVTCCSFSHDGT 119 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-----------------------eEecCCCCceEEEEEccCce
Confidence 3477889999999999999999999999999755411 11234555676654 4556
Q ss_pred eEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceE
Q 002753 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (884)
Q Consensus 144 ~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (884)
.++.|.-+|.+++ |+..+..... .+...-..|.-|.|
T Consensus 120 lLATGdmsG~v~v--~~~stg~~~~----------------------------------~~~~e~~dieWl~W------- 156 (399)
T KOG0296|consen 120 LLATGDMSGKVLV--FKVSTGGEQW----------------------------------KLDQEVEDIEWLKW------- 156 (399)
T ss_pred EEEecCCCccEEE--EEcccCceEE----------------------------------EeecccCceEEEEe-------
Confidence 6666666888877 4444433220 00111222434444
Q ss_pred EEEEcCCcEEEEeecCCccceeeecc-ccc--ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeecc
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIK-IDK--ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~-~~~--~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~ 299 (884)
.|-+++++.++.|+.+..|.... +.+ ..||...+. =.|.|+|+.+++|..||+|++||..+ +.++..+...
T Consensus 157 ---Hp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~~~- 231 (399)
T KOG0296|consen 157 ---HPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKITQA- 231 (399)
T ss_pred ---cccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC-CceeEEeccc-
Confidence 56677777777777777787665 222 267876655 78999999999999999999999998 7777776652
Q ss_pred CCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc-------ccccceeeeeecCCCCCCccceeec
Q 002753 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-------ISLSSISSPIVKPNQDCKYEPLMSG 372 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~-------~~~~~v~s~~~s~~~~~~~~~l~sg 372 (884)
..++..++.++.+|..+..|+.++.+.+-+..+++.+....+ .....+.++.+.|.. +.....+.|
T Consensus 232 ------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s-s~lpL~A~G 304 (399)
T KOG0296|consen 232 ------EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS-SKLPLAACG 304 (399)
T ss_pred ------ccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc-cccchhhcc
Confidence 245678899999999999999999999999888887766652 113344555555442 122344445
Q ss_pred c---eeEEEecCCceEEEEecCCcceEEEEee--cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccc
Q 002753 373 T---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (884)
Q Consensus 373 ~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~ 447 (884)
+ ++.+||....++.... .|...|..+.| .+++++++.++.++.|+.+.|.. ..+
T Consensus 305 ~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l--------------------~~~ 363 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQL--------------------KFT 363 (399)
T ss_pred cccceEEEEecccchhheec-cCCCceEEEEEcCcchheeeccCceEEeeeccccce--------------------EEE
Confidence 4 8999999887776665 56778988888 48999999999999999988875 568
Q ss_pred cccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002753 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (884)
Q Consensus 448 ~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~ 481 (884)
|.||+.+|.+.+++|+++.++++|.|++. ++++.
T Consensus 364 y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 364 YTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999999 88763
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.88 E-value=1.6e-20 Score=229.86 Aligned_cols=272 Identities=15% Similarity=0.192 Sum_probs=202.9
Q ss_pred eEEEEEcCCcEEEEeecCCccceeeecccc----c-------ccCCCCcEEEEEcC-CCCEEEEEecCCeEEEEEccCCC
Q 002753 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKID----K-------ELGSGDAVCASIAP-EQQILAVGTRRGVVELYDLAESA 289 (884)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~----~-------~~~h~~~v~va~sp-~~~~la~g~~dg~v~lw~~~~~~ 289 (884)
..+.+++||+++++++.|+++++|+..... . ..++....+++|+| ++.+||+|+.||+|++||+.+ +
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~-~ 565 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR-S 565 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC-C
Confidence 345568999999999999999999864210 0 02233333488887 478999999999999999987 6
Q ss_pred cceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC-CCCCCcc
Q 002753 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP-NQDCKYE 367 (884)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~-~~~~~~~ 367 (884)
+.+..+.+ |.+.|++++|+| ||.+|++|+.||+|++||+..+....++..+ ..+.++.|++ ++ .
T Consensus 566 ~~~~~~~~--------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g----~ 631 (793)
T PLN00181 566 QLVTEMKE--------HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESG----R 631 (793)
T ss_pred eEEEEecC--------CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCC----C
Confidence 77777777 999999999997 8999999999999999999988888888654 4688888854 45 6
Q ss_pred ceeecc---eeEEEecCCce-EEEEecCCcceEEEEee--cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEE
Q 002753 368 PLMSGT---SMMQWDEYGYR-LYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (884)
Q Consensus 368 ~l~sg~---~i~~W~~~~~~-l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~ 441 (884)
.+++|+ .+.+|+....+ .+....+|...|..+.+ +..+++++.|+++++|++..+.... .+
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~-----------~~-- 698 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI-----------NE-- 698 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc-----------CC--
Confidence 777776 89999998765 45566788888876666 7789999999999999986432100 00
Q ss_pred eecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc--E-EEecCcc-------ceeeeEEEEEEEeCC--E
Q 002753 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--W-RVFGDIT-------QEQKIQSKGLLWLGK--I 508 (884)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~--w-~~f~~~~-------~e~~~~v~~~~W~~~--~ 508 (884)
+....+.+|...+.+++|+|+|++||+|+.||.+ +|+..... | ..|.... ......|..++|.++ .
T Consensus 699 -~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 699 -TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred -cceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 0124567899999999999999999999999999 99986543 1 1122111 112234778999754 6
Q ss_pred EEEEEEecCCCeEEEEEee
Q 002753 509 IVVCNYIDSSNTYELLFYP 527 (884)
Q Consensus 509 lv~~~~~~~~~~~elr~y~ 527 (884)
+++|+ .+..|++|.
T Consensus 778 lva~~-----~dG~I~i~~ 791 (793)
T PLN00181 778 LVAAN-----STGNIKILE 791 (793)
T ss_pred EEEec-----CCCcEEEEe
Confidence 66662 345677775
No 43
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=2.3e-19 Score=194.49 Aligned_cols=493 Identities=13% Similarity=0.116 Sum_probs=278.4
Q ss_pred CceEEEEEecCeEEEEEc---cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEE
Q 002753 21 SQQIIYFKVNNGLLLIAS---PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (884)
Q Consensus 21 ~~~vv~fspdg~lla~~t---~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~ 97 (884)
...+++|||.++|+++++ |--|.+|+.++ ....+. ..+ ...+..++||.||.+++++. +.+|++|.++
T Consensus 124 ~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~-N~~~as-----nki--ss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~ 194 (1080)
T KOG1408|consen 124 NVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRV-NSSGAS-----NKI--SSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQ 194 (1080)
T ss_pred cceeeeecCCCcEEEeeccccceEEEhhhhhh-cccccc-----ccc--ceeEEEEEEccCCceeeeee-eeeEEEEEee
Confidence 456799999999999885 45788998852 222222 111 13457899999999998875 5589999998
Q ss_pred ecCce---eecCCCC----------------CCC------ceeeee--eeeeeccccc----cccceeEEEEeecCCeEE
Q 002753 98 ITEKS---IQIGGKQ----------------PSG------LFFIKI--SLVLNEQLPF----AEKGLSVSNIVSDNKHML 146 (884)
Q Consensus 98 ~~~~~---~~~~~~~----------------~~~------~~l~~~--~~~~~~~~~~----~~~~~~v~~i~~~~~~ll 146 (884)
.+.+. +.+.+.. +.+ ..+... -..++.+..+ .-+.....||..+...++
T Consensus 195 ~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~ 274 (1080)
T KOG1408|consen 195 IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIA 274 (1080)
T ss_pred ccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEE
Confidence 66521 1111100 000 011110 0011111111 111222346777788999
Q ss_pred EEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccc-cCCCccEEEEEEcCCcceEEE
Q 002753 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK-FPISSAIIWLELCLPMRLLFV 225 (884)
Q Consensus 147 v~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~~ 225 (884)
+|+.+|.|+++. .+...-..--+.++ ..+.+++...... ...... ...--..+.+.|++
T Consensus 275 cgCa~g~vrlFn--p~tL~y~~Tlpr~h----------alg~d~a~~~q~~-~~~s~~~~a~fPD~IA~~Fde------- 334 (1080)
T KOG1408|consen 275 CGCAKGMVRLFN--PETLDYAGTLPRSH----------ALGSDTANLSQPE-PKNSESSPAIFPDAIACQFDE------- 334 (1080)
T ss_pred EeeccceeeecC--cchhhhcccccccc----------ccccchhhccccc-ccccccCcccCCceeEEEecC-------
Confidence 999999999853 33322110000111 1111111110000 000000 00000123444444
Q ss_pred EEcCCcEEEEeecCCccceeeecccccc------cCCCCcEE-EEEc------------CCCCEEEEEecCCeEEEEEcc
Q 002753 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAVC-ASIA------------PEQQILAVGTRRGVVELYDLA 286 (884)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~~~------~~h~~~v~-va~s------------p~~~~la~g~~dg~v~lw~~~ 286 (884)
....+.+-.+|..+.+||..+..+. .-|...+. +..- |.+. +.+++.||+||+|+++
T Consensus 335 ---t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~c-F~TCSsD~TIRlW~l~ 410 (1080)
T KOG1408|consen 335 ---TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGC-FTTCSSDGTIRLWDLA 410 (1080)
T ss_pred ---CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccc-eeEecCCCcEEEeecc
Confidence 4444444455666666776655432 23443333 2211 2333 7789999999999997
Q ss_pred CCCcceEE-----E--eeccCCC----------------------CCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 002753 287 ESASLIRT-----V--SLYDWGY----------------------SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 287 ~~~~~~~~-----l--~~~~~~~----------------------~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~ 337 (884)
. +..-.+ + ...+++| ..+....+++++.||||++||+|..-|+++|+++.
T Consensus 411 ~-ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq 489 (1080)
T KOG1408|consen 411 F-CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQ 489 (1080)
T ss_pred c-ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEeh
Confidence 5 211001 0 0111111 11334569999999999999999999999999999
Q ss_pred CCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecC-CceEEEEecCCcceEEEEee---c--ceeecc
Q 002753 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGSSERVLIFSF---G--KCCLNR 408 (884)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~-~~~l~~~~~~~~~~v~~~~~---~--~~~~s~ 408 (884)
.-+.++..+.| .++|.++.|+... .....+++++ .+.++|.. .+.+..++.+|...|..+.| + ..++++
T Consensus 490 ~l~~~~~~eAH-esEilcLeyS~p~-~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Misc 567 (1080)
T KOG1408|consen 490 ELEYTCFMEAH-ESEILCLEYSFPV-LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISC 567 (1080)
T ss_pred hhhhhhheecc-cceeEEEeecCch-hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEec
Confidence 98888888888 7889999987542 2225677777 66777764 57778888999999988887 2 456777
Q ss_pred cCCCCceeeeeeecCCeEEEEecCCCCceeEEEeeccc-ccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcE-
Q 002753 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW- 485 (884)
Q Consensus 409 ~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~-~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w- 485 (884)
+.|..+.........+..+ .|. +-......+..+++.|..+++++++.|..| +||+++||-
T Consensus 568 GADksimFr~~qk~~~g~~----------------f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRL----------------FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred cCchhhheehhccccCcee----------------ccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 7777665443322222111 111 111123468899999999999999999999 999999974
Q ss_pred EEecC-ccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCC--CCCCcceEEEEecCCccEEEEccCCEEEEEEcC
Q 002753 486 RVFGD-ITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRP 562 (884)
Q Consensus 486 ~~f~~-~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~--~l~~~~~l~~~~~~~~~~~~~~~~~~llv~~~~ 562 (884)
|.|.. ..+|.+..-..+.-.+.|++..|.+ ..|-+|+.. ..--....|.+-+.. +-+...=.+|+-+..|
T Consensus 632 k~FKgs~~~eG~lIKv~lDPSgiY~atScsd-----ktl~~~Df~sgEcvA~m~GHsE~VTG--~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDPSGIYLATSCSD-----KTLCFVDFVSGECVAQMTGHSEAVTG--VKFLNDCKHLISVSGD 704 (1080)
T ss_pred eeecccccCCCceEEEEECCCccEEEEeecC-----CceEEEEeccchhhhhhcCcchheee--eeecccchhheeecCC
Confidence 56753 3334433222333345555544332 356666653 111112222221111 1222222356666789
Q ss_pred CeEEEEEEEE
Q 002753 563 FDVHIFHVKL 572 (884)
Q Consensus 563 ~~i~i~~~~~ 572 (884)
+.|.||++..
T Consensus 705 gCIFvW~lp~ 714 (1080)
T KOG1408|consen 705 GCIFVWKLPL 714 (1080)
T ss_pred ceEEEEECch
Confidence 9999998863
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.88 E-value=4.5e-20 Score=225.95 Aligned_cols=318 Identities=13% Similarity=0.107 Sum_probs=202.6
Q ss_pred cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeee
Q 002753 39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKI 118 (884)
Q Consensus 39 ~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~ 118 (884)
++-+++|+.. .......+. ...-..+.+.+.+++|+|||+++|+++.||.|++|++...... ..... .+..
T Consensus 457 ~gl~~~~~~~-~~~~~~~~~-~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~----~~~~~-~~~~-- 527 (793)
T PLN00181 457 EGLCKYLSFS-KLRVKADLK-QGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD----GRDIH-YPVV-- 527 (793)
T ss_pred hhhhhhhccc-ceEEEEeec-cccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc----ccccc-cceE--
Confidence 3457788874 333222222 1122224567789999999999999999999999997531100 00000 0000
Q ss_pred eeeeeccccccccceeEEEEe--e-cCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecC
Q 002753 119 SLVLNEQLPFAEKGLSVSNIV--S-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (884)
Q Consensus 119 ~~~~~~~~~~~~~~~~v~~i~--~-~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~ 195 (884)
... . ...+.++. + ++..++++..||.+.+|+.+ .....
T Consensus 528 --~~~------~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~--~~~~~---------------------------- 568 (793)
T PLN00181 528 --ELA------S-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVA--RSQLV---------------------------- 568 (793)
T ss_pred --Eec------c-cCceeeEEeccCCCCEEEEEeCCCeEEEEECC--CCeEE----------------------------
Confidence 000 0 11233333 2 35678888899999985543 21111
Q ss_pred CCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEEEEEc-CCCCEE
Q 002753 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIA-PEQQIL 271 (884)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~va~s-p~~~~l 271 (884)
..+..|...|.+++|++ ++|.++++++.|+++++|+...+... ..+....+++|+ +++.++
T Consensus 569 ------~~~~~H~~~V~~l~~~p---------~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 569 ------TEMKEHEKRVWSIDYSS---------ADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSL 633 (793)
T ss_pred ------EEecCCCCCEEEEEEcC---------CCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEE
Confidence 11234566788877632 47889999999999999998765443 333344458885 579999
Q ss_pred EEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCC------eeEEEe
Q 002753 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC------RLMSTI 345 (884)
Q Consensus 272 a~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~------~l~~tl 345 (884)
|+|+.||+|++||+.........+.+ |.+.|.+++|+ ++..|++|+.|++|++||+..+ ..+.++
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~~~--------h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~ 704 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTMIG--------HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF 704 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEecC--------CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence 99999999999999873234556666 99999999997 7889999999999999998632 456666
Q ss_pred ccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeec
Q 002753 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYG 422 (884)
Q Consensus 346 ~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~ 422 (884)
.+| ...++.+.++|++ ..+++|+ .+.+|+....... +.+.+. .
T Consensus 705 ~gh-~~~i~~v~~s~~~----~~lasgs~D~~v~iw~~~~~~~~----------~s~~~~------------------~- 750 (793)
T PLN00181 705 MGH-TNVKNFVGLSVSD----GYIATGSETNEVFVYHKAFPMPV----------LSYKFK------------------T- 750 (793)
T ss_pred cCC-CCCeeEEEEcCCC----CEEEEEeCCCEEEEEECCCCCce----------EEEecc------------------c-
Confidence 666 4556666666665 4454443 4444543322111 000000 0
Q ss_pred CCeEEEEecCCCCceeEEEeecc-cccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002753 423 EDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 423 ~~~~~i~~~~~~~~~~w~~~~~p-~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~ 480 (884)
.+ .++ .....+...|++++|+|+|..|++|+.||.+ +|++
T Consensus 751 ~~------------------~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 751 ID------------------PVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CC------------------cccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 00 000 0123455679999999999999999999999 9986
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.3e-21 Score=195.70 Aligned_cols=273 Identities=16% Similarity=0.208 Sum_probs=196.2
Q ss_pred EEEEecCeEEEEEc-cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCcee
Q 002753 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (884)
Q Consensus 25 v~fspdg~lla~~t-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~ 103 (884)
+.||++|++||+++ +.+..||.+. +... -++..+..+ +..++..+.||||+++|+++..+..+.+||+.++....
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~-~d~~-~kl~~tlvg--h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVV-YDVH-FKLKKTLVG--HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEe-cCcc-eeeeeeeec--ccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh
Confidence 78999999999996 6689999884 4443 223333333 45677889999999999999999999999998766433
Q ss_pred ecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeec
Q 002753 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSH 183 (884)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~ 183 (884)
.++... +....-++-.||+..+++|+.|+.+..|+.|++.....+
T Consensus 306 ~y~~~~--------------------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~--------------- 350 (519)
T KOG0293|consen 306 LYPSGL--------------------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE--------------- 350 (519)
T ss_pred hcccCc--------------------CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc---------------
Confidence 221000 011112344678899999999999988777765543221
Q ss_pred ccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcE
Q 002753 184 HFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV 260 (884)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v 260 (884)
......|.+++ +++||+.+++...|..+++.+....... ..+...+
T Consensus 351 ---------------------gvr~~~v~dla----------it~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~it 399 (519)
T KOG0293|consen 351 ---------------------GVRDPKVHDLA----------ITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPIT 399 (519)
T ss_pred ---------------------ccccceeEEEE----------EcCCCcEEEEEecccceeeechhhhhhhccccccCcee
Confidence 11122355544 6899998888888888888776543222 3344444
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcC---eEEEEEC-CCCCEEEEEEcCCcEEEEec
Q 002753 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP---VSCIAWT-PDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 261 ~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~---V~~l~~s-pdg~~Lasg~~dg~v~vW~~ 336 (884)
...+|.+++++.+--.+..+++||+++ ...++...+ |+-. |.+ +|- .|..++|+|++|+.|+||+.
T Consensus 400 s~~iS~d~k~~LvnL~~qei~LWDl~e-~~lv~kY~G--------hkq~~fiIrS-CFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 400 SFSISKDGKLALVNLQDQEIHLWDLEE-NKLVRKYFG--------HKQGHFIIRS-CFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred EEEEcCCCcEEEEEcccCeeEEeecch-hhHHHHhhc--------ccccceEEEe-ccCCCCcceEEecCCCceEEEEEc
Confidence 599999999999999999999999997 777777777 5432 333 343 36689999999999999999
Q ss_pred cCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecC
Q 002753 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (884)
Q Consensus 337 ~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~ 381 (884)
.+++++.++.|| ...|++++++|.++ ..++|++ ++++|.+.
T Consensus 470 ~sgkll~~LsGH-s~~vNcVswNP~~p---~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 470 ISGKLLAVLSGH-SKTVNCVSWNPADP---EMFASASDDGTIRIWGPS 513 (519)
T ss_pred cCCceeEeecCC-cceeeEEecCCCCH---HHhhccCCCCeEEEecCC
Confidence 999999999999 67899999988762 3445554 66666554
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=1e-19 Score=193.64 Aligned_cols=270 Identities=20% Similarity=0.287 Sum_probs=210.1
Q ss_pred cCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccccc---ccCCCCcE-EEEEcCCCCEEEEEecCCeE
Q 002753 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVV 280 (884)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~---~~~h~~~v-~va~sp~~~~la~g~~dg~v 280 (884)
..|...|.++.| +++|+.++++..++.+.+|+....+. ...|...+ .+.|+|+++.+++++.||.|
T Consensus 6 ~~h~~~i~~~~~----------~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 6 KGHTGGVTCVAF----------SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred cccCCCEEEEEE----------cCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence 356677888775 67788888888888888888765432 25677777 49999999999999999999
Q ss_pred EEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC
Q 002753 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (884)
Q Consensus 281 ~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~ 360 (884)
++|++.. .+....+.. |.+.|.+++|+|++.++++++.||.+++|++..++....+..| ...+.++.++|
T Consensus 76 ~i~~~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 145 (289)
T cd00200 76 RLWDLET-GECVRTLTG--------HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSP 145 (289)
T ss_pred EEEEcCc-ccceEEEec--------cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcEEEEEEcC
Confidence 9999987 566666666 8889999999999999999998999999999988888888766 66899999999
Q ss_pred CCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCC
Q 002753 361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (884)
Q Consensus 361 ~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~ 434 (884)
++ ..++++. .+.+|+..+++.......+...+..+.+ ++.+++++.++.+++|++..+..
T Consensus 146 ~~----~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~---------- 211 (289)
T cd00200 146 DG----TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC---------- 211 (289)
T ss_pred cC----CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce----------
Confidence 86 6666553 7899999988888877777777766555 55788888899999999765332
Q ss_pred CceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE-EecCccceeeeEEEEEEEeC--CEEE
Q 002753 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLG--KIIV 510 (884)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~-~f~~~~~e~~~~v~~~~W~~--~~lv 510 (884)
...+..|..++.+++|+|++.++++++.||.+ +|++.+++-. .+. .....+..+.|.+ ..++
T Consensus 212 ----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 212 ----------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS----GHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred ----------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc----ccCCcEEEEEECCCCCEEE
Confidence 23445778899999999999999999989999 9999875432 222 1222477888986 4666
Q ss_pred EEEEecCCCeEEEEEee
Q 002753 511 VCNYIDSSNTYELLFYP 527 (884)
Q Consensus 511 ~~~~~~~~~~~elr~y~ 527 (884)
++ +.+..+++|+
T Consensus 278 ~~-----~~d~~i~iw~ 289 (289)
T cd00200 278 SG-----SADGTIRIWD 289 (289)
T ss_pred Ee-----cCCCeEEecC
Confidence 65 2334677763
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.87 E-value=2.4e-20 Score=189.53 Aligned_cols=271 Identities=16% Similarity=0.186 Sum_probs=206.7
Q ss_pred cceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCcc
Q 002753 131 KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSA 210 (884)
Q Consensus 131 ~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 210 (884)
+++-|+++....+.++.|+.||.+++|+-.|+.. ....++.+.
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~-------------------------------------~~~~Ght~~ 146 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSI-------------------------------------KTIVGHTGP 146 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEecCCceE-------------------------------------EEEecCCcc
Confidence 3445666655678999999999999865544321 112355666
Q ss_pred EEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc-------cCCCCcEE-EEEcCCCCEEEEEecCCeEEE
Q 002753 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAVC-ASIAPEQQILAVGTRRGVVEL 282 (884)
Q Consensus 211 i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-------~~h~~~v~-va~sp~~~~la~g~~dg~v~l 282 (884)
|.++.+. .-.+....+++++.|.++.+|....++.. .||..+|- ++.+++|..+++|+.|.++++
T Consensus 147 ik~v~~v-------~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lki 219 (423)
T KOG0313|consen 147 IKSVAWV-------IKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKI 219 (423)
T ss_pred eeeeEEE-------ecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeee
Confidence 7666651 11222236888899999999987765432 58999886 999999999999999999999
Q ss_pred EEccCCC------------------------cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 002753 283 YDLAESA------------------------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (884)
Q Consensus 283 w~~~~~~------------------------~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~ 338 (884)
|+..... .++-++. +|+++|.++.|++ ...+.+++.|.+|++||+..
T Consensus 220 Ws~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~--------GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 220 WSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE--------GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred cccCCCccccccccchhhhhhhhhhhcccccCceEEec--------ccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence 9932210 1122333 5999999999998 67788999999999999999
Q ss_pred CeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCc--e-EEEEecCCcceEEEEee----cceeecc
Q 002753 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--R-LYAIEEGSSERVLIFSF----GKCCLNR 408 (884)
Q Consensus 339 ~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~--~-l~~~~~~~~~~v~~~~~----~~~~~s~ 408 (884)
+.+..++.. ...++++.++|.. ..+++|+ .+++||++++ . .-..+.+|.+-|-.+.+ .-.++++
T Consensus 291 g~~~~~~~~--~ksl~~i~~~~~~----~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 291 GGLKSTLTT--NKSLNCISYSPLS----KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred ccceeeeec--CcceeEeeccccc----ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEE
Confidence 999888876 4678999999876 7888887 7899999764 2 34566789888744444 4578999
Q ss_pred cCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002753 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 409 ~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~ 480 (884)
+.|+++++||+...... .....+|+..|.++.|+ +|..+++||.|..+ ++..
T Consensus 365 S~D~t~klWDvRS~k~p-------------------lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 365 SYDNTVKLWDVRSTKAP-------------------LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ecCCeEEEEEeccCCCc-------------------ceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 99999999999887752 24567899999999999 78899999999999 7653
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.6e-20 Score=177.70 Aligned_cols=262 Identities=19% Similarity=0.219 Sum_probs=204.8
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEE
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~ 332 (884)
.++..++. +.||-+|++..+++.|.+||+|+... +.++++..+ |...|..++-+.|...+|+|+.|+.+.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~liktYsg--------hG~EVlD~~~s~Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GALIKTYSG--------HGHEVLDAALSSDNSKFASCGGDKAVQ 84 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccc-cceeeeecC--------CCceeeeccccccccccccCCCCceEE
Confidence 45778888 99999999999999999999999988 889999998 999999999999999999999999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCC--ceEEEEecCCcceEEEEee-cceee
Q 002753 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG--YRLYAIEEGSSERVLIFSF-GKCCL 406 (884)
Q Consensus 333 vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~--~~l~~~~~~~~~~v~~~~~-~~~~~ 406 (884)
+||+.+|+....+++| ...|+.++|.-.. ..++||+ ++++||-++ .+.++++....+.|..+.. ...++
T Consensus 85 vwDV~TGkv~Rr~rgH-~aqVNtV~fNees----SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIv 159 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGH-LAQVNTVRFNEES----SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIV 159 (307)
T ss_pred EEEcccCeeeeecccc-cceeeEEEecCcc----eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEE
Confidence 9999999999999999 7889999997766 7788887 899999765 5667777777778888888 67889
Q ss_pred cccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcE
Q 002753 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (884)
Q Consensus 407 s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w 485 (884)
+|+.||+++.+++..|.. ...|.+| ||++++||+||+...+++-|+++ +-|-.||+.
T Consensus 160 aGS~DGtvRtydiR~G~l--------------------~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTL--------------------SSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred eeccCCcEEEEEeeccee--------------------ehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 999999999999988765 3456665 89999999999999999999999 999999862
Q ss_pred EEecCccce--eeeEEEEEEEeC-CEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEEecCCccEEEEc----cCCEEEE
Q 002753 486 RVFGDITQE--QKIQSKGLLWLG-KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDV----YEDYILV 558 (884)
Q Consensus 486 ~~f~~~~~e--~~~~v~~~~W~~-~~lv~~~~~~~~~~~elr~y~~~~l~~~~~l~~~~~~~~~~~~~~----~~~~llv 558 (884)
++...-. .++.+ +.+..+ +..|+++ +.+..+.+|+. -+..++...+.++.++..++ ..+-+++
T Consensus 218 --L~sYkGhkn~eykl-dc~l~qsdthV~sg----SEDG~Vy~wdL---vd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~ 287 (307)
T KOG0316|consen 218 --LKSYKGHKNMEYKL-DCCLNQSDTHVFSG----SEDGKVYFWDL---VDETQISKLSVVSTVIVTDLSCHPTMDDFIT 287 (307)
T ss_pred --HHHhcccccceeee-eeeecccceeEEec----cCCceEEEEEe---ccceeeeeeccCCceeEEeeecccCccceeE
Confidence 2111111 12223 333333 2333321 23456778855 35556677777776655443 2344555
Q ss_pred EEc
Q 002753 559 TYR 561 (884)
Q Consensus 559 ~~~ 561 (884)
++.
T Consensus 288 A~~ 290 (307)
T KOG0316|consen 288 ATG 290 (307)
T ss_pred ecC
Confidence 443
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=8.5e-20 Score=194.34 Aligned_cols=270 Identities=19% Similarity=0.266 Sum_probs=205.6
Q ss_pred ccceeEEEEe--ecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCC
Q 002753 130 EKGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (884)
Q Consensus 130 ~~~~~v~~i~--~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 207 (884)
++...++++. ++++.+++++.+|.+.+|+.+.... . .....+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--~----------------------------------~~~~~~ 50 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--L----------------------------------RTLKGH 50 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--E----------------------------------EEEecC
Confidence 3445566654 4557788888899998876543221 0 001122
Q ss_pred CccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEE
Q 002753 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELY 283 (884)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw 283 (884)
...+..+. ++++++.+++++.++.+.+|+....+.. ..|...+. +.++|+++++++++.||.+++|
T Consensus 51 ~~~i~~~~----------~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 120 (289)
T cd00200 51 TGPVRDVA----------ASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120 (289)
T ss_pred CcceeEEE----------ECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEE
Confidence 33344444 4677888888888889999988764322 55665555 9999999999999989999999
Q ss_pred EccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCC
Q 002753 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (884)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~ 363 (884)
|+.+ .+....+.. |.+.|.+++|+|++.++++++.|+.+++||+..++....+..| ...+.++.++|++
T Consensus 121 ~~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~- 189 (289)
T cd00200 121 DVET-GKCLTTLRG--------HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDG- 189 (289)
T ss_pred ECCC-cEEEEEecc--------CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCc-
Confidence 9986 666666665 8899999999999999999998999999999988888888766 5689999999987
Q ss_pred CCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCce
Q 002753 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL 437 (884)
Q Consensus 364 ~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~ 437 (884)
..++.+. .+.+|+...++.......+...+..+.+ ++.+++++.++.+++|++..+..
T Consensus 190 ---~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~------------- 253 (289)
T cd00200 190 ---EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC------------- 253 (289)
T ss_pred ---CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee-------------
Confidence 5555444 8899999988888777677777765555 55677777799999999765332
Q ss_pred eEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEE
Q 002753 438 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (884)
Q Consensus 438 ~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd 479 (884)
...+..|..+|.+++|+|+|+++++++.||.+ +|+
T Consensus 254 -------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 254 -------VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -------EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 23344788899999999999999999999999 885
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.87 E-value=2.7e-20 Score=183.91 Aligned_cols=268 Identities=13% Similarity=0.114 Sum_probs=204.5
Q ss_pred ccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccc----cccCCCCcEE-EEEcCCCCEEEEEecCC
Q 002753 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----KELGSGDAVC-ASIAPEQQILAVGTRRG 278 (884)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~----~~~~h~~~v~-va~sp~~~~la~g~~dg 278 (884)
..++++.|..+. |+|||..+++++.|..+-+|+...-. ...+|..||. +.|++|++.|.+++.|.
T Consensus 43 l~gh~geI~~~~----------F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 43 LPGHKGEIYTIK----------FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred cCCCcceEEEEE----------ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc
Confidence 356777787766 58999999999999999999854321 2379999998 99999999999999999
Q ss_pred eEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCC-EEEEEEcCCcEEEEeccCCeeEEEeccccccceeeee
Q 002753 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (884)
Q Consensus 279 ~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~ 357 (884)
+|+.||+.+ ++.++..++ |++-|+++.-+.-|- ++.+|+.||++++||+.....+.++.. .-.++++.
T Consensus 113 ~v~~wD~~t-G~~~rk~k~--------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~--kyqltAv~ 181 (338)
T KOG0265|consen 113 TVRGWDAET-GKRIRKHKG--------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN--KYQLTAVG 181 (338)
T ss_pred eEEEEeccc-ceeeehhcc--------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc--ceeEEEEE
Confidence 999999999 899998888 999999998444454 667889999999999998888877754 35688889
Q ss_pred ecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeec--CCe-EEE
Q 002753 358 VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYG--EDR-LLV 428 (884)
Q Consensus 358 ~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~--~~~-~~i 428 (884)
|...+ ....+|. .+++|++...+...+++||.+.|..++. +..+.+-+.|+++++|++..- ..+ +.+
T Consensus 182 f~d~s----~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~i 257 (338)
T KOG0265|consen 182 FKDTS----DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKI 257 (338)
T ss_pred ecccc----cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEE
Confidence 98776 6666665 6799999999999999999999955444 889999999999999998642 222 444
Q ss_pred EecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCC
Q 002753 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK 507 (884)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~ 507 (884)
+.|+.. +-......++|||+++.+..|+.|..+ +||..+.+...+ -..++..+....+.-...
T Consensus 258 f~g~~h---------------nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk-lpGh~gsvn~~~Fhp~e~ 321 (338)
T KOG0265|consen 258 FQGHIH---------------NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYK-LPGHYGSVNEVDFHPTEP 321 (338)
T ss_pred eecchh---------------hhhhhcceeeccCCCCccccccccceEEEeecccccEEEE-cCCcceeEEEeeecCCCc
Confidence 443211 011224578999999999999999999 999988764332 233333322233333345
Q ss_pred EEEEE
Q 002753 508 IIVVC 512 (884)
Q Consensus 508 ~lv~~ 512 (884)
+++.|
T Consensus 322 iils~ 326 (338)
T KOG0265|consen 322 IILSC 326 (338)
T ss_pred EEEEe
Confidence 55555
No 51
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.3e-20 Score=200.94 Aligned_cols=270 Identities=20% Similarity=0.261 Sum_probs=190.6
Q ss_pred cCeEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCC
Q 002753 30 NNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (884)
Q Consensus 30 dg~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~ 109 (884)
..+.||++-...|++|+.. .+.. ..+. ++. .+.++++.|+|+|+.||+++.+|.+.|||+......-.
T Consensus 187 s~n~laValg~~vylW~~~-s~~v-~~l~----~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~----- 254 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSAS-SGSV-TELC----SFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT----- 254 (484)
T ss_pred cCCeEEEEecceEEEEecC-CCce-EEeE----ecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc-----
Confidence 4568888888899999995 3321 1111 111 36678999999999999999999999999864332111
Q ss_pred CCCceeeeeeeeeeccccccc-cceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCC
Q 002753 110 PSGLFFIKISLVLNEQLPFAE-KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (884)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 188 (884)
+.+ +...|.|++.+...+.+|..+|.|...+....
T Consensus 255 ------------------~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~-------------------------- 290 (484)
T KOG0305|consen 255 ------------------LRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRIS-------------------------- 290 (484)
T ss_pred ------------------ccCCcCceeEEEeccCceEEEecCCCcEEEEEEecc--------------------------
Confidence 111 34445566655555555666665544221100
Q ss_pred CcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccccCCCCcEE-EEEcCC
Q 002753 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPE 267 (884)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~~h~~~v~-va~sp~ 267 (884)
+.. ...+.+|..-|| ++|++|
T Consensus 291 ------------------------------------------~~~----------------~~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 291 ------------------------------------------QHV----------------VSTLQGHRQEVCGLKWSPD 312 (484)
T ss_pred ------------------------------------------hhh----------------hhhhhcccceeeeeEECCC
Confidence 000 001257889999 999999
Q ss_pred CCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEE--cCCcEEEEeccCCeeEEE
Q 002753 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGW--KSRGLTVWSVSGCRLMST 344 (884)
Q Consensus 268 ~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~--~dg~v~vW~~~~~~l~~t 344 (884)
+.++|+|+.|+.+.|||... ...+..+.. |++.|.+++|+| ....||+|+ .|+.|++|++.++..+.+
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~--------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLS-PEPKFTFTE--------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred CCeeccCCCccceEeccCCC-ccccEEEec--------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 99999999999999999966 677777777 999999999999 577899875 689999999999887755
Q ss_pred eccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCC
Q 002753 345 IRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGED 424 (884)
Q Consensus 345 l~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~ 424 (884)
+... +.+..+.|.....+++.+.. -.++.+.+|.+.+..
T Consensus 384 vdtg----------------------sQVcsL~Wsk~~kEi~sthG------------------~s~n~i~lw~~ps~~- 422 (484)
T KOG0305|consen 384 VDTG----------------------SQVCSLIWSKKYKELLSTHG------------------YSENQITLWKYPSMK- 422 (484)
T ss_pred cccC----------------------CceeeEEEcCCCCEEEEecC------------------CCCCcEEEEeccccc-
Confidence 4321 22355677776666654431 122344556554422
Q ss_pred eEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002753 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (884)
Q Consensus 425 ~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s 482 (884)
....+.+|...|.++++||||..+++|+.|.++ +|++-.
T Consensus 423 -------------------~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 423 -------------------LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred -------------------eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 245678999999999999999999999999999 998754
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.86 E-value=1.1e-19 Score=179.62 Aligned_cols=221 Identities=12% Similarity=0.176 Sum_probs=180.1
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEE
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~ 332 (884)
.+|+..+. +.|+|+|..+|+|+.|..|.+|++....+..-++++ |+++|..+.|.+||..+++++.|++++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg--------HsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG--------HSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc--------ccceeEeeeeccCCCEEEEecCCceEE
Confidence 78999887 999999999999999999999998765666777787 999999999999999999999999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee---cceee
Q 002753 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL 406 (884)
Q Consensus 333 vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~ 406 (884)
.||+.+++....+++| .+-|+++.-+.-+ .+.+.||+ ++++||.+..+.+.+... .-++.++.| +....
T Consensus 116 ~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg---~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGH-TSFVNSLDPSRRG---PQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVI 190 (338)
T ss_pred EEecccceeeehhccc-cceeeecCccccC---CeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEeccccccee
Confidence 9999999999999998 6677777633222 25566776 999999998777766643 456777777 67889
Q ss_pred cccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC---
Q 002753 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ--- 482 (884)
Q Consensus 407 s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s--- 482 (884)
+|+-|+.+++|++..++. ...+.||..+|..++.||+|.++.+-+-|.++ +||+.-
T Consensus 191 sggIdn~ikvWd~r~~d~--------------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDG--------------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred eccccCceeeeccccCcc--------------------eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 999999999999887665 45677999999999999999999999999999 999852
Q ss_pred -Cc-EEEecCccceeeeEEEEEEEeCC
Q 002753 483 -KK-WRVFGDITQEQKIQSKGLLWLGK 507 (884)
Q Consensus 483 -~~-w~~f~~~~~e~~~~v~~~~W~~~ 507 (884)
.| -+.|....+..+.+.....|..+
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCC
Confidence 23 45554433333333456788643
No 53
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=7.3e-20 Score=177.44 Aligned_cols=259 Identities=14% Similarity=0.192 Sum_probs=193.9
Q ss_pred cCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc-----cCCCCcEE-EEEcC-CCCEEEEEecC
Q 002753 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAP-EQQILAVGTRR 277 (884)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~~h~~~v~-va~sp-~~~~la~g~~d 277 (884)
..+...+.+++| ..||..+++++.|+++.+|+....+.. .+|.+.+- ++++| ...++|+++.|
T Consensus 17 ~~~~~~v~Sv~w----------n~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 17 QGHVQKVHSVAW----------NCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred hhhhhcceEEEE----------cccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCC
Confidence 345566766665 789999999999999999988765332 67887777 77777 46799999999
Q ss_pred CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeee
Q 002753 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (884)
Q Consensus 278 g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~ 357 (884)
.+|++||+.. ++++..... ++.-.-+.|+|||.+++++..|..|.+.|....+.+.+.+. .-.++.+.
T Consensus 87 k~ir~wd~r~-~k~~~~i~~---------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~--~~e~ne~~ 154 (313)
T KOG1407|consen 87 KTIRIWDIRS-GKCTARIET---------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF--KFEVNEIS 154 (313)
T ss_pred ceEEEEEecc-CcEEEEeec---------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc--cceeeeee
Confidence 9999999998 788877665 44456689999999999999999999999998887766554 23566666
Q ss_pred ecCCCCCCccceeec-ceeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCC
Q 002753 358 VKPNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (884)
Q Consensus 358 ~s~~~~~~~~~l~sg-~~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~ 433 (884)
|+.++ +...+.+| +.+-+-..-.-+.+..++.|....+++.+ |+++++|+.|..+.+||+..--
T Consensus 155 w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi---------- 222 (313)
T KOG1407|consen 155 WNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI---------- 222 (313)
T ss_pred ecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh----------
Confidence 66333 11233344 23333333366777788889877755555 9999999999999999964322
Q ss_pred CCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc--EEEecCccceeeeEEEEEEEeCCEEE
Q 002753 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKIIV 510 (884)
Q Consensus 434 ~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~--w~~f~~~~~e~~~~v~~~~W~~~~lv 510 (884)
+...+..+.||||.++||-||++||+|+.|..| |=++++|. |+.- .+ -....++|++...+
T Consensus 223 ----------C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~----~~--~~t~tVAWHPk~~L 286 (313)
T KOG1407|consen 223 ----------CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP----CE--GPTFTVAWHPKRPL 286 (313)
T ss_pred ----------hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee----cc--CCceeEEecCCCce
Confidence 234566789999999999999999999999999 99999986 4321 11 11235899987665
Q ss_pred EEE
Q 002753 511 VCN 513 (884)
Q Consensus 511 ~~~ 513 (884)
.+.
T Consensus 287 LAy 289 (313)
T KOG1407|consen 287 LAY 289 (313)
T ss_pred eeE
Confidence 553
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2e-20 Score=191.55 Aligned_cols=222 Identities=14% Similarity=0.112 Sum_probs=176.3
Q ss_pred EEEcCCcEEEEeecCCccceeeecccccc----cCCCCcE-EEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeecc
Q 002753 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (884)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~~h~~~v-~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~ 299 (884)
.++||.+++++++.+..+++||..++... .++...+ +++|.|||..+++|+.|+++..||++. .....+++-
T Consensus 276 ~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg--n~~~~W~gv- 352 (519)
T KOG0293|consen 276 MWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG--NILGNWEGV- 352 (519)
T ss_pred EECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc--chhhccccc-
Confidence 34788998888888888999999888765 3444555 499999999999999999999999974 444445541
Q ss_pred CCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeE
Q 002753 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~ 376 (884)
..-.|.+++.++||+.+.+...|..+++++........-+.. ...+++...|.++ ...+... .+.
T Consensus 353 ------r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise--~~~its~~iS~d~----k~~LvnL~~qei~ 420 (519)
T KOG0293|consen 353 ------RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE--EQPITSFSISKDG----KLALVNLQDQEIH 420 (519)
T ss_pred ------ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc--cCceeEEEEcCCC----cEEEEEcccCeeE
Confidence 234699999999999999999999999999987654433333 3578898888887 5544332 789
Q ss_pred EEecCCceEEEEecCCcceEEEEee------cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeeccccccc
Q 002753 377 QWDEYGYRLYAIEEGSSERVLIFSF------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (884)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~------~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~ 450 (884)
.||.+...++....||...-+.+.. .+.+++||.|+.+++|+...+.- ..++.|
T Consensus 421 LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl--------------------l~~LsG 480 (519)
T KOG0293|consen 421 LWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL--------------------LAVLSG 480 (519)
T ss_pred EeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce--------------------eEeecC
Confidence 9999988888888888766544333 35789999999999999777654 567889
Q ss_pred CCCceEEEEEccC-CCEEEEEeCCceE-EEEcc
Q 002753 451 QNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIR 481 (884)
Q Consensus 451 ~~~~I~~va~S~d-G~~lavag~dg~i-iwd~~ 481 (884)
|...|+||+++|. -..+|+||+||++ +|...
T Consensus 481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 9999999999996 5689999999999 99875
No 55
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.86 E-value=3e-19 Score=180.97 Aligned_cols=280 Identities=14% Similarity=0.170 Sum_probs=202.8
Q ss_pred ccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCC
Q 002753 128 FAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (884)
Q Consensus 128 ~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 207 (884)
+..+.++|.+++.+.+.-+++|..|.=..+.|+..... .. ..+.+|
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-~~---------------------------------~eltgH 105 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-FA---------------------------------GELTGH 105 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-ce---------------------------------eEecCC
Confidence 45667778888776544444444443334457654432 11 334678
Q ss_pred CccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---c-CCCCcEEEEEcCCCCEEEEEecCCeEEEE
Q 002753 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---L-GSGDAVCASIAPEQQILAVGTRRGVVELY 283 (884)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~-~h~~~v~va~sp~~~~la~g~~dg~v~lw 283 (884)
+..|+++.| +.||.+++++.-++.+++|...++... . .-.+...+.|+|.+..|+.|+.||.+-+|
T Consensus 106 KDSVt~~~F----------shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw 175 (399)
T KOG0296|consen 106 KDSVTCCSF----------SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMW 175 (399)
T ss_pred CCceEEEEE----------ccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEE
Confidence 888888775 889999999998999999987765432 1 23455569999999999999999999999
Q ss_pred EccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCC
Q 002753 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (884)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~ 363 (884)
.+.+ ....+.+.+ |+.++++=.|.|||+.+++|+.||+|++|+.+++...+.+.+........+.++.++
T Consensus 176 ~ip~-~~~~kv~~G--------h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~- 245 (399)
T KOG0296|consen 176 QIPS-QALCKVMSG--------HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG- 245 (399)
T ss_pred ECCC-cceeeEecC--------CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc-
Confidence 9988 677788888 999999999999999999999999999999999999988875322233444444444
Q ss_pred CCccceeecc---eeEEEecCCceEEEEecC--------Cc---ceEEEEee---cceeecccCCCCceeeeeeecCCeE
Q 002753 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEG--------SS---ERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRL 426 (884)
Q Consensus 364 ~~~~~l~sg~---~i~~W~~~~~~l~~~~~~--------~~---~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~ 426 (884)
..+.+|. ....-+..+++++....+ +. ..|-.+++ -..++.|+.|+++.+||+....
T Consensus 246 ---~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--- 319 (399)
T KOG0296|consen 246 ---STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--- 319 (399)
T ss_pred ---ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch---
Confidence 3444443 444445555565555442 12 22222222 4466789999999999976543
Q ss_pred EEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE
Q 002753 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (884)
Q Consensus 427 ~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~ 486 (884)
++....|..+|..+.|-+ -.+|++|+.||.+ .||.++|+.+
T Consensus 320 ------------------~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 320 ------------------LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred ------------------hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence 334556888899999998 7899999999999 9999999865
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.3e-20 Score=178.29 Aligned_cols=201 Identities=11% Similarity=0.146 Sum_probs=160.1
Q ss_pred cccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcC-CCCEEEEEecC
Q 002753 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILAVGTRR 277 (884)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp-~~~~la~g~~d 277 (884)
.+++|+..|.+++|+. .+++.+++++-|+++|+|+...++.+ .||...+. ++||| ...++|+++.|
T Consensus 99 ~~kEH~~EV~Svdwn~---------~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 99 KFKEHKREVYSVDWNT---------VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred HHHhhhhheEEecccc---------ccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 3567888999999854 56778888899999999998776544 78999998 99999 47899999999
Q ss_pred CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCe-eEEEeccccccceee
Q 002753 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISS 355 (884)
Q Consensus 278 g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~~~-l~~tl~~~~~~~v~s 355 (884)
|++++||++..++.+. +.. |...+.|+.|+. |.+.|++|+-|+.|+.||+..-+ .+..+.+| .-+|..
T Consensus 170 ~~l~lwdvr~~gk~~~-i~a--------h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRk 239 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMS-IEA--------HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRK 239 (311)
T ss_pred ceEEEEEecCCCceeE-EEe--------ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEE
Confidence 9999999998555444 677 899999999997 78899999999999999997643 34455555 334455
Q ss_pred eeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCC
Q 002753 356 PIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (884)
Q Consensus 356 ~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~ 435 (884)
+.+||.. ...++++++|.++++|+...++.
T Consensus 240 vk~Sph~---------------------------------------~~lLaSasYDmT~riw~~~~~ds----------- 269 (311)
T KOG0277|consen 240 VKFSPHH---------------------------------------ASLLASASYDMTVRIWDPERQDS----------- 269 (311)
T ss_pred EecCcch---------------------------------------hhHhhhccccceEEecccccchh-----------
Confidence 5554442 33557899999999999775554
Q ss_pred ceeEEEeecccccccCCCceEEEEEcc-CCCEEEEEeCCceE-EEEc
Q 002753 436 ELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 436 ~~~w~~~~~p~~~~~~~~~I~~va~S~-dG~~lavag~dg~i-iwd~ 480 (884)
+..++..|..-+..+.||+ ++.++|+.|.|+++ +|+.
T Consensus 270 --------~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 --------AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred --------hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 2466778888888899986 48899999999999 9985
No 57
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=1.8e-20 Score=185.15 Aligned_cols=238 Identities=16% Similarity=0.211 Sum_probs=175.7
Q ss_pred ccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc-----cCCCCcEE-EEEcCCCCEEEEEecC
Q 002753 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQILAVGTRR 277 (884)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~~h~~~v~-va~sp~~~~la~g~~d 277 (884)
+++|-..|..++| .|...++++++.|++++++|..+.... ......+. ++|+|.|.+|++|.+-
T Consensus 168 lYDH~devn~l~F----------HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH 237 (430)
T KOG0640|consen 168 LYDHVDEVNDLDF----------HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH 237 (430)
T ss_pred hhhccCcccceee----------cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCC
Confidence 3455556766665 677889999999999999998764322 22234555 9999999999999999
Q ss_pred CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc-ccccceeee
Q 002753 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSP 356 (884)
Q Consensus 278 g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~-~~~~~v~s~ 356 (884)
-++++||+++ .++...-. ...+|++.|+++.+|+.|++-++|+.||.|++||--+++|+.++.. |+.++|.+.
T Consensus 238 p~~rlYdv~T-~Qcfvsan-----Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa 311 (430)
T KOG0640|consen 238 PTLRLYDVNT-YQCFVSAN-----PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA 311 (430)
T ss_pred CceeEEeccc-eeEeeecC-----cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE
Confidence 9999999998 44332111 1224999999999999999999999999999999999999999875 778899999
Q ss_pred eecCCCCCCccceeecc---eeEEEecCCceEEEEecCC--cceE---E--EEee-cceeecc-cCCCCceeeeeeecCC
Q 002753 357 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS--SERV---L--IFSF-GKCCLNR-GVSGMTYARQVIYGED 424 (884)
Q Consensus 357 ~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~--~~~v---~--~~~~-~~~~~s~-~~d~~~~~w~l~~~~~ 424 (884)
.|..++ .++++.+ .+++|...+++++....|. .++. . .|.- ..+++.. -..+.+..|+..+++.
T Consensus 312 ~Ftkn~----kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 312 VFTKNG----KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred EEccCC----eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 999998 7777665 8999999999998877552 1111 1 1111 1111111 1123344555444433
Q ss_pred eEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002753 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 425 ~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~ 480 (884)
. -.--++||+++|++.-||.+..+.++|.|-.+ .|--
T Consensus 388 ~-------------------~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 388 V-------------------ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred h-------------------hhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 1 22345999999999999999999999999988 8753
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.4e-19 Score=198.79 Aligned_cols=236 Identities=11% Similarity=0.121 Sum_probs=199.0
Q ss_pred CCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEE
Q 002753 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVEL 282 (884)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~l 282 (884)
+.+.+..++| .|.--.++++...+.|++||...+..+ .+|.++|+ ++|+|++.++++|+.|-+|+|
T Consensus 8 kSsRvKglsF----------HP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 8 KSSRVKGLSF----------HPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKV 77 (1202)
T ss_pred ccccccceec----------CCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEE
Confidence 3455777775 566667777788889999998866544 78999999 999999999999999999999
Q ss_pred EEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 002753 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 283 w~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
|+.++ .+++.++.+ |-.-|+.+.|++.--++.++++|.+|+||+..++.+++.+.|| ..-|.+..|+|..
T Consensus 78 WnYk~-rrclftL~G--------HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhptE 147 (1202)
T KOG0292|consen 78 WNYKT-RRCLFTLLG--------HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPTE 147 (1202)
T ss_pred Eeccc-ceehhhhcc--------ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCcc
Confidence 99998 889999998 9999999999999999999999999999999999999999999 7889999999987
Q ss_pred CCCccceeecc---eeEEEecCCce---------------------EE--------EEecCCcceE--EEEee-cceeec
Q 002753 363 DCKYEPLMSGT---SMMQWDEYGYR---------------------LY--------AIEEGSSERV--LIFSF-GKCCLN 407 (884)
Q Consensus 363 ~~~~~~l~sg~---~i~~W~~~~~~---------------------l~--------~~~~~~~~~v--~~~~~-~~~~~s 407 (884)
+.++|++ ++++||..+-+ ++ .+.+||+..| .+|.+ ...++|
T Consensus 148 ----DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS 223 (1202)
T KOG0292|consen 148 ----DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS 223 (1202)
T ss_pred ----ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe
Confidence 8899998 99999986521 11 2456777777 34444 567789
Q ss_pred ccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002753 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 408 ~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~ 484 (884)
|+.|..+++|.+...+. |+ ..+..||.++|.++-|+|....+.+.|.|+++ +||++.+.
T Consensus 224 G~DDRqVKlWrmnetKa--------------WE----vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKA--------------WE----VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred cCCcceeeEEEeccccc--------------ee----ehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 99999999998655432 32 24677999999999999999999999999999 99998654
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.85 E-value=6.3e-21 Score=199.54 Aligned_cols=245 Identities=16% Similarity=0.215 Sum_probs=184.8
Q ss_pred ccCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCc
Q 002753 253 ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (884)
Q Consensus 253 ~~~h~~~v~-va~sp-~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~ 330 (884)
+.||.+.|. +.|.| .+.+|++|+.|+.|+||++...+++++++.+ |..+|.+++|+++|..+.+++.|+.
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g--------H~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG--------HRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc--------chhhhhhhhccccCCeeeeeeccee
Confidence 378999998 99999 8999999999999999999887899999999 9999999999999999999999999
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--eeEEEecCCceEEEEecCCcceEEEEee---ccee
Q 002753 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCC 405 (884)
Q Consensus 331 v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~ 405 (884)
+++||+++|++..++... ....++.|.|++ ....++.++ .++.||.++++++.....|-+.+..+.| ++.+
T Consensus 282 lKlwDtETG~~~~~f~~~--~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLD--KVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred eeeeccccceEEEEEecC--CCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 999999999999888653 467888999987 223444444 8999999999987777677777766666 8999
Q ss_pred ecccCCCCceeeeeeecCCeEEEEec--CCCC------ceeE--------E----Eee------cccccccCCC--ceEE
Q 002753 406 LNRGVSGMTYARQVIYGEDRLLVVQS--EDTD------ELKI--------L----HLN------LPVSYISQNW--PVQH 457 (884)
Q Consensus 406 ~s~~~d~~~~~w~l~~~~~~~~i~~~--~~~~------~~~w--------~----~~~------~p~~~~~~~~--~I~~ 457 (884)
++.+.|+++++|+....-.--++... +..+ .-.| . ... .-..+.+|.- --..
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 99999999999986543221111111 0111 1111 0 000 1124567753 3557
Q ss_pred EEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeC---CEEEEE
Q 002753 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG---KIIVVC 512 (884)
Q Consensus 458 va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~---~~lv~~ 512 (884)
+.|||||++|++|..||.+ +||-.+-+ ++... +.++..|+++.|++ ..+++|
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~k--l~~~l-kah~~~ci~v~wHP~e~Skvat~ 493 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTK--LVSKL-KAHDQPCIGVDWHPVEPSKVATC 493 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhh--hhhcc-ccCCcceEEEEecCCCcceeEec
Confidence 9999999999999999999 99987753 22111 12334688999985 456665
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=9.6e-21 Score=187.74 Aligned_cols=258 Identities=14% Similarity=0.216 Sum_probs=197.8
Q ss_pred eEEEEEcCCcEEEEeecCCccceeeeccccccc-----------CCCCcE-EEEEcCCCCEEEEEecCCeEEEEEccCCC
Q 002753 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL-----------GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA 289 (884)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~-----------~h~~~v-~va~sp~~~~la~g~~dg~v~lw~~~~~~ 289 (884)
.++.|+|||+++++++-|+-+.+|+..+++... -+.+++ |+.||.|...+|+|+.||.|++|.+.+ +
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G 295 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-G 295 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-c
Confidence 346789999999999999999999988775431 245666 599999999999999999999999999 8
Q ss_pred cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce
Q 002753 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (884)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l 369 (884)
.+++.+.. +|+..|+|+.||.|+..+.+++.|.++++--+.+|+++..+++| .+-|+...|.++| ..+
T Consensus 296 ~ClRrFdr-------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-sSyvn~a~ft~dG----~~i 363 (508)
T KOG0275|consen 296 QCLRRFDR-------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-SSYVNEATFTDDG----HHI 363 (508)
T ss_pred hHHHHhhh-------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-cccccceEEcCCC----CeE
Confidence 89887763 29999999999999999999999999999999999999999999 7889999999999 777
Q ss_pred eecc---eeEEEecCCceEEEEecCCc--ceE---EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEE
Q 002753 370 MSGT---SMMQWDEYGYRLYAIEEGSS--ERV---LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (884)
Q Consensus 370 ~sg~---~i~~W~~~~~~l~~~~~~~~--~~v---~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~ 440 (884)
++++ ++++|+..+.+++.+.+... -.| .-++- ...++.++..+++.+-++ ..+
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~--qGQ---------------- 425 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM--QGQ---------------- 425 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec--cce----------------
Confidence 7665 99999999999888775422 222 22222 334555555555544222 111
Q ss_pred Eeeccccc---ccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEec
Q 002753 441 HLNLPVSY---ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYID 516 (884)
Q Consensus 441 ~~~~p~~~---~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~ 516 (884)
+..++ ....+...+++.||.|.+++..|.|+.. .+++.+|+...+-.. +|+ .|+|+.-.++--+.+.|.+
T Consensus 426 ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-hEk--dvIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 426 ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-HEK--DVIGLTHHPHQNLLASYSE 499 (508)
T ss_pred ---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-ccc--cccccccCcccchhhhhcc
Confidence 11222 1234567788999999999999999999 999999987665333 333 3677777665444455543
No 61
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.84 E-value=4.8e-19 Score=172.23 Aligned_cols=255 Identities=15% Similarity=0.142 Sum_probs=197.0
Q ss_pred ccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecC
Q 002753 202 DHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRR 277 (884)
Q Consensus 202 ~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~d 277 (884)
+.+.+|..+++.+.| ..+|.++++++.|.++.+|-...++++ .||..++. ++++-+.+.+.+|++|
T Consensus 4 i~l~GHERplTqiKy----------N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD 73 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKY----------NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSAD 73 (327)
T ss_pred cccccCccccceEEe----------cCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecccc
Confidence 345678888999887 678999999999999999988887776 79999997 9999999999999999
Q ss_pred CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC-----CcEEEEecc-------CCeeEEEe
Q 002753 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-----RGLTVWSVS-------GCRLMSTI 345 (884)
Q Consensus 278 g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d-----g~v~vW~~~-------~~~l~~tl 345 (884)
.+++|||+.+ ++.+.+++. ..+|+.+.|+++|++++...++ +.|.++++. +..++..+
T Consensus 74 ~t~kLWDv~t-Gk~la~~k~---------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 74 QTAKLWDVET-GKQLATWKT---------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred ceeEEEEcCC-CcEEEEeec---------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 9999999999 888888775 6789999999999988876654 568999986 44445555
Q ss_pred ccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceE-EEEecCCcceEEEEee---cceeecccCCCCceeee
Q 002753 346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL-YAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQ 418 (884)
Q Consensus 346 ~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l-~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~ 418 (884)
.-+ .+.+++..|+|-+ +.+++|. .+..|+..+++. +...+.|...|..+.+ ...++++|.|.+.++||
T Consensus 144 ~t~-~skit~a~Wg~l~----~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 144 PTP-DSKITSALWGPLG----ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred cCC-ccceeeeeecccC----CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeee
Confidence 555 4678888899988 8888875 899999998654 4455778888855555 67899999999999998
Q ss_pred eeecC--------------------CeEEEEecCCCCcee--------E-----EEe--ecccccccCCCceEEEEEccC
Q 002753 419 VIYGE--------------------DRLLVVQSEDTDELK--------I-----LHL--NLPVSYISQNWPVQHVAASKD 463 (884)
Q Consensus 419 l~~~~--------------------~~~~i~~~~~~~~~~--------w-----~~~--~~p~~~~~~~~~I~~va~S~d 463 (884)
+..-. +.+.+-.|.+..+.. . +.+ .-...+.+|-+||+++||+||
T Consensus 219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence 75321 112222222222110 0 000 012357799999999999999
Q ss_pred CCEEEEEeCCceE-EEEcc
Q 002753 464 GMFLAVAGLHGLI-LYDIR 481 (884)
Q Consensus 464 G~~lavag~dg~i-iwd~~ 481 (884)
|+..++||.||.+ +.-..
T Consensus 299 GksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred CcccccCCCCceEEEEEec
Confidence 9999999999999 66443
No 62
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=1.6e-18 Score=187.93 Aligned_cols=416 Identities=15% Similarity=0.127 Sum_probs=244.8
Q ss_pred CceEEEEEecCeEEEEEccCeEEEEecCCceeE----EEEEeeCh--------H-h---------------hhhccc---
Q 002753 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVR----LGKYKRDS--------E-S---------------VQREGE--- 69 (884)
Q Consensus 21 ~~~vv~fspdg~lla~~t~~~v~IW~~~~~~~~----l~~~~r~~--------~-s---------------l~~~G~--- 69 (884)
....++||.||.||++++...|.+|+.. ..-+ +--..|+. + . +...|.
T Consensus 167 ~Vsav~fsEdgSYfvT~gnrHvk~wyl~-~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvE 245 (1080)
T KOG1408|consen 167 VVSAVAFSEDGSYFVTSGNRHVKLWYLQ-IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVE 245 (1080)
T ss_pred eEEEEEEccCCceeeeeeeeeEEEEEee-ccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceee
Confidence 3456899999999999999999999984 3220 00001110 0 0 000010
Q ss_pred ---------------eeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeee---eeeeecccccccc
Q 002753 70 ---------------NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKI---SLVLNEQLPFAEK 131 (884)
Q Consensus 70 ---------------~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~ 131 (884)
..+=+.+=..++|+++.++|.|++|+.++-.-..+.+....-+..+.++ +-...+.....-.
T Consensus 246 FSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fP 325 (1080)
T KOG1408|consen 246 FSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFP 325 (1080)
T ss_pred echhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCC
Confidence 0011122256899999999999999875422111111111000011111 0011111111111
Q ss_pred ceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccE
Q 002753 132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (884)
Q Consensus 132 ~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 211 (884)
+.....|...++.+.+--.|..+++|+..+-..... . ....-|...|
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk-----------~----------------------~s~lyHS~ci 372 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK-----------C----------------------SSMLYHSACI 372 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEeccccccccc-----------e----------------------eeeeecccee
Confidence 222333444556777777778888755443221110 0 1112344445
Q ss_pred EEEEEcCC-c-ceEEEEEcCCcEEEEeecCCccceeeecccc---c---------c------------------------
Q 002753 212 IWLELCLP-M-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKID---K---------E------------------------ 253 (884)
Q Consensus 212 ~~i~~~~~-~-~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~---~---------~------------------------ 253 (884)
.+++--|. + ..-.+..|.|- +.+++.|++|++|+..... . +
T Consensus 373 W~Ve~~p~nv~~~~~aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka 451 (1080)
T KOG1408|consen 373 WDVENLPCNVHSPTAACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKA 451 (1080)
T ss_pred eeeccccccccCcccccCCccc-eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCccccc
Confidence 55543331 1 12233345454 6667778888888764210 0 0
Q ss_pred ----cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC---CCCEEEEE
Q 002753 254 ----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAVG 325 (884)
Q Consensus 254 ----~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp---dg~~Lasg 325 (884)
.+....+. +++||+|+.||+|..-|++|||++.+ .+....+.. |...|.|+.||. ..++||+|
T Consensus 452 ~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eA--------HesEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 452 LVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEA--------HESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred chhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheec--------ccceeEEEeecCchhhhHhhhhc
Confidence 01122344 99999999999999999999999987 565656666 999999999995 35799999
Q ss_pred EcCCcEEEEeccCC-eeEEEeccccccceeeeeecCCCCCCccceeecc-eeEEEecCC----ceEEEEec--CCcceEE
Q 002753 326 WKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYG----YRLYAIEE--GSSERVL 397 (884)
Q Consensus 326 ~~dg~v~vW~~~~~-~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~-~i~~W~~~~----~~l~~~~~--~~~~~v~ 397 (884)
++|+-|.|+|+..+ .+..++.+| .++|+++.|-.+|- +.+.+..|. ..+.+.... +.++.... -....++
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~H-SssITsvKFa~~gl-n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGH-SSSITSVKFACNGL-NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred cCCceEEEEecccccchhhhhccc-ccceeEEEEeecCC-ceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence 99999999999644 567888888 78899999976651 112233332 333333221 33322110 1123455
Q ss_pred EEee---cceeecccCCCCceeeeeeecCCeEEEEecCCC--Cce-----------------------eEEEeecccccc
Q 002753 398 IFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT--DEL-----------------------KILHLNLPVSYI 449 (884)
Q Consensus 398 ~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~--~~~-----------------------~w~~~~~p~~~~ 449 (884)
.+.. .+.+++++.|..++++++..++..-.+-.+.+. ... ..-...+..+..
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence 4443 788899999999999998776654333322221 100 112234456778
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002753 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (884)
Q Consensus 450 ~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s 482 (884)
||...|+.+.|++|-++|.+++.||-| +|.+..
T Consensus 681 GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 681 GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CcchheeeeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999999999 999854
No 63
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=9.4e-17 Score=174.79 Aligned_cols=420 Identities=15% Similarity=0.207 Sum_probs=247.6
Q ss_pred CCCceEEEEEecCeEEEEE-ccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEE
Q 002753 19 PSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (884)
Q Consensus 19 ~~~~~vv~fspdg~lla~~-t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~ 97 (884)
|..--.+|||.+.+.||++ +++.|.||+.. +.= .+. +... ..+.+.+-+++|+ +|..|+....+|.|.-||+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~-~~w-~~~--~vi~-g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLS-NNW-FLE--PVIH-GPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccC-CCc-eee--EEEe-cCCCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence 4445558999999889988 78999999995 421 111 1111 1234566789999 56677888889999999997
Q ss_pred ecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCc
Q 002753 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (884)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~ 177 (884)
..+..... +..+..+|++ |+.+.++.+++|+++|.+..++-..+...-.
T Consensus 99 ~lk~~~~~---d~~gg~IWsi------------------ai~p~~~~l~IgcddGvl~~~s~~p~~I~~~---------- 147 (691)
T KOG2048|consen 99 TLKQKYNI---DSNGGAIWSI------------------AINPENTILAIGCDDGVLYDFSIGPDKITYK---------- 147 (691)
T ss_pred cCceeEEe---cCCCcceeEE------------------EeCCccceEEeecCCceEEEEecCCceEEEE----------
Confidence 65433221 1122234443 2333457788999999665554332221100
Q ss_pred cceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccccccc---
Q 002753 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL--- 254 (884)
Q Consensus 178 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~--- 254 (884)
..+.-.++.+.+++| .++|..++.|+.|+-+++||...+....
T Consensus 148 ------------------------r~l~rq~sRvLslsw----------~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~ 193 (691)
T KOG2048|consen 148 ------------------------RSLMRQKSRVLSLSW----------NPTGTKIAGGSIDGVIRIWDVKSGQTLHIIT 193 (691)
T ss_pred ------------------------eecccccceEEEEEe----------cCCccEEEecccCceEEEEEcCCCceEEEee
Confidence 112233567878776 6788888888889889999987665431
Q ss_pred ------CCCCc--EE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEE
Q 002753 255 ------GSGDA--VC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (884)
Q Consensus 255 ------~h~~~--v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 325 (884)
...+. +. +.|= ....||+|...|+|..||... +.+++..+. |.+-|.|++-++++..++++
T Consensus 194 ~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~-gTLiqS~~~--------h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 194 MQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIF-GTLIQSHSC--------HDADVLALAVADNEDRVFSA 263 (691)
T ss_pred ecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccC-cchhhhhhh--------hhcceeEEEEcCCCCeEEEc
Confidence 11122 22 3333 556899999999999999988 777877777 89999999999999999999
Q ss_pred EcCCcEEEEeccCCee---EEEeccccccceeeeeecCCC----------------CCC-----------ccceeecc--
Q 002753 326 WKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQ----------------DCK-----------YEPLMSGT-- 373 (884)
Q Consensus 326 ~~dg~v~vW~~~~~~l---~~tl~~~~~~~v~s~~~s~~~----------------~~~-----------~~~l~sg~-- 373 (884)
+.|+.+.-+...++.- ....+.++...|.+++..++- ..+ ....+++.
T Consensus 264 Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~ 343 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPE 343 (691)
T ss_pred cCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCcc
Confidence 9999999998877643 222233334455554433221 000 00011111
Q ss_pred --eeEEEecCCceEEEEecC----Ccce--EEEEee-cc---eeecccCCCCc---------eeeeeeecC---------
Q 002753 374 --SMMQWDEYGYRLYAIEEG----SSER--VLIFSF-GK---CCLNRGVSGMT---------YARQVIYGE--------- 423 (884)
Q Consensus 374 --~i~~W~~~~~~l~~~~~~----~~~~--v~~~~~-~~---~~~s~~~d~~~---------~~w~l~~~~--------- 423 (884)
..+.|...+..+|..... +.+. +..+.. .+ +..+.|+|+.. +++.+....
T Consensus 344 ~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~ 423 (691)
T KOG2048|consen 344 NRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDD 423 (691)
T ss_pred ceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEecc
Confidence 455676666666654322 1111 122221 11 11223333322 222222111
Q ss_pred -----------------CeEEEEecCCCCceeEEEeec--cc-------ccccCCCceEEEEEccCCCEEEEEeCCceE-
Q 002753 424 -----------------DRLLVVQSEDTDELKILHLNL--PV-------SYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (884)
Q Consensus 424 -----------------~~~~i~~~~~~~~~~w~~~~~--p~-------~~~~~~~~I~~va~S~dG~~lavag~dg~i- 476 (884)
+.+++.. .....|+..++ |. .-.+-..+|..++.||||+|+|+++.+|.+
T Consensus 424 ~~~~~~~a~~i~ftid~~k~~~~s---~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~ 500 (691)
T KOG2048|consen 424 VPLALLDASAISFTIDKNKLFLVS---KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIF 500 (691)
T ss_pred chhhhccceeeEEEecCceEEEEe---cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEE
Confidence 1111111 11122332221 11 011345679999999999999999999999
Q ss_pred EEEccCCcEEEecCccceeeeEEEEE-EEeCCEEEEEEEecCCCeEEEEE
Q 002753 477 LYDIRQKKWRVFGDITQEQKIQSKGL-LWLGKIIVVCNYIDSSNTYELLF 525 (884)
Q Consensus 477 iwd~~s~~w~~f~~~~~e~~~~v~~~-~W~~~~lv~~~~~~~~~~~elr~ 525 (884)
+||+.+++-+.+..... ..++..+. .|..+.++++..+ ...+|..+
T Consensus 501 v~nl~~~~~~~l~~rln-~~vTa~~~~~~~~~~lvvats~--nQv~efdi 547 (691)
T KOG2048|consen 501 VYNLETLESHLLKVRLN-IDVTAAAFSPFVRNRLVVATSN--NQVFEFDI 547 (691)
T ss_pred EEEcccceeecchhccC-cceeeeeccccccCcEEEEecC--CeEEEEec
Confidence 99999998887753332 33333343 3777888887443 23344444
No 64
>PTZ00421 coronin; Provisional
Probab=99.83 E-value=1.7e-18 Score=196.54 Aligned_cols=201 Identities=13% Similarity=0.147 Sum_probs=158.0
Q ss_pred ccCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEccCCC------cceEEEeeccCCCCCCCCcCeEEEEECCCC-CEEE
Q 002753 253 ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFA 323 (884)
Q Consensus 253 ~~~h~~~v~-va~sp-~~~~la~g~~dg~v~lw~~~~~~------~~~~~l~~~~~~~~~~h~~~V~~l~~spdg-~~La 323 (884)
+.+|.+.+. ++|+| ++++||+|+.||+|++||+.+.+ ..+..+.+ |...|.+++|+|++ ..||
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g--------H~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG--------HTKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC--------CCCcEEEEEeCcCCCCEEE
Confidence 368998887 99999 88999999999999999997622 23455666 99999999999986 6999
Q ss_pred EEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceE---E
Q 002753 324 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV---L 397 (884)
Q Consensus 324 sg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v---~ 397 (884)
+|+.|++|++||+..+....++.+| ...|.+++|+|++ ..+++++ ++++||+++++......+|.+.. .
T Consensus 143 Sgs~DgtVrIWDl~tg~~~~~l~~h-~~~V~sla~spdG----~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKAVEVIKCH-SDQITSLEWNLDG----SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRC 217 (493)
T ss_pred EEeCCCEEEEEECCCCeEEEEEcCC-CCceEEEEEECCC----CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence 9999999999999999888888887 6789999999998 7888776 89999999998888777776542 2
Q ss_pred EEee-cceeecc----cCCCCceeeeeeecCCeEEEEecCCCCceeEEEeeccccc-ccCCCceEEEEEccCCCEEEEEe
Q 002753 398 IFSF-GKCCLNR----GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY-ISQNWPVQHVAASKDGMFLAVAG 471 (884)
Q Consensus 398 ~~~~-~~~~~s~----~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~-~~~~~~I~~va~S~dG~~lavag 471 (884)
.+.. ...++++ +.|+++++|++......+ ... ..+...+....|++|++++++||
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~-------------------~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY-------------------STVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce-------------------eEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 2223 3445543 357899999986544311 111 12234566678999999999998
Q ss_pred C-CceE-EEEccCCcE
Q 002753 472 L-HGLI-LYDIRQKKW 485 (884)
Q Consensus 472 ~-dg~i-iwd~~s~~w 485 (884)
. ||.+ +||+.+++.
T Consensus 279 kgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 279 KGEGNIRCFELMNERL 294 (493)
T ss_pred eCCCeEEEEEeeCCce
Confidence 5 9999 999988764
No 65
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=5.4e-19 Score=197.59 Aligned_cols=203 Identities=14% Similarity=0.170 Sum_probs=144.0
Q ss_pred cccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc--cCCCCcEE-EEEcC-CCCEEEEEecCC
Q 002753 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAP-EQQILAVGTRRG 278 (884)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~~h~~~v~-va~sp-~~~~la~g~~dg 278 (884)
.+.+|...|.++.| +...++++++-|.|+++|+....+++ -.|.+-|+ |+|+| |.+++++|+-||
T Consensus 364 ef~GHt~DILDlSW-----------SKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~ 432 (712)
T KOG0283|consen 364 EFKGHTADILDLSW-----------SKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDG 432 (712)
T ss_pred hhhccchhheeccc-----------ccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccccc
Confidence 35678888999998 44667888899999999998877776 56888775 99999 789999999999
Q ss_pred eEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeee
Q 002753 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (884)
Q Consensus 279 ~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~ 358 (884)
.||||++.+ .+.. .+.. -..-|++++|+|||+..++|+.+|.++++++.+.++.....-+..
T Consensus 433 KvRiWsI~d-~~Vv-~W~D--------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~-------- 494 (712)
T KOG0283|consen 433 KVRLWSISD-KKVV-DWND--------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH-------- 494 (712)
T ss_pred ceEEeecCc-CeeE-eehh--------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec--------
Confidence 999999987 3333 2322 246799999999999999999999999999999887655432100
Q ss_pred cCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEee--cc--eeecccCCCCceeeeeeecCCeEEEEecCCC
Q 002753 359 KPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF--GK--CCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (884)
Q Consensus 359 s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~--~~--~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~ 434 (884)
+ + .. ..|. +|..|.+ +. .++..+.|..|++.+..+.+
T Consensus 495 -~-~----Kk---------------------~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~----------- 535 (712)
T KOG0283|consen 495 -N-K----KK---------------------KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD----------- 535 (712)
T ss_pred -c-C----cc---------------------ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh-----------
Confidence 0 0 00 0111 4433333 22 24444566666665543222
Q ss_pred CceeEEEeecccccccCC--CceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002753 435 DELKILHLNLPVSYISQN--WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (884)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~--~~I~~va~S~dG~~lavag~dg~i-iwd~~s 482 (884)
+..+|+|.. ..-..++|+.||++|++|++|.-+ +|+...
T Consensus 536 ---------lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 536 ---------LVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ---------hhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 234555432 123468899999999999999999 999854
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=8.7e-18 Score=159.17 Aligned_cols=262 Identities=15% Similarity=0.199 Sum_probs=176.1
Q ss_pred EEEEEecCeEEEEEcc-CeEEEEecCCcee------------EEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcE
Q 002753 24 IIYFKVNNGLLLIASP-CHIELWSSSQHKV------------RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLY 90 (884)
Q Consensus 24 vv~fspdg~lla~~t~-~~v~IW~~~~~~~------------~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~ 90 (884)
.|+|.|.|.+.|+++. .+.+|-... ... +...++|+.. +.|.+++.+|||+|+.||+++.|.+
T Consensus 37 av~fhp~g~lyavgsnskt~ric~yp-~l~~~r~~hea~~~pp~v~~kr~kh---hkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNSKTFRICAYP-ALIDLRHAHEAAKQPPSVLCKRNKH---HKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred eEEecCCCceEEeccCCceEEEEccc-cccCcccccccccCCCeEEeeeccc---cCccEEEEEecCccCeEEecCCCce
Confidence 3789999999999864 466666431 111 1122334322 4699999999999999999999999
Q ss_pred EEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEee-----cCCeEEEEecCCcEEEEecCCcccc
Q 002753 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-----DNKHMLLGLSDGSLYSISWKGEFYG 165 (884)
Q Consensus 91 l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~-----~~~~llv~~~~g~i~~~~w~~~~~~ 165 (884)
|++........... ++ ...+..+++.|..++. .+..++++...|...++.-+-....
T Consensus 113 ik~l~fn~dt~~~~-----g~-------------dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 113 IKVLPFNADTCNAT-----GH-------------DLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEEEeccccccccc-----Cc-------------ceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 99876643332110 01 0112334455544322 2345666666665555443332222
Q ss_pred ceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCcccee
Q 002753 166 AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLA 245 (884)
Q Consensus 166 ~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w 245 (884)
.+ ..+.++.+.|..+ .+=+|-.+++++.|.+++.|
T Consensus 175 ~~----------------------------------~a~sghtghilal-----------yswn~~m~~sgsqdktirfw 209 (350)
T KOG0641|consen 175 GF----------------------------------HALSGHTGHILAL-----------YSWNGAMFASGSQDKTIRFW 209 (350)
T ss_pred cc----------------------------------eeecCCcccEEEE-----------EEecCcEEEccCCCceEEEE
Confidence 21 1123444555443 35678899999999999999
Q ss_pred eecccccc-----c----C-CCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEE
Q 002753 246 EFIKIDKE-----L----G-SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA 314 (884)
Q Consensus 246 ~~~~~~~~-----~----~-h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~ 314 (884)
|..-..+. . + ...++. +++.|.|++||+|-.|....+||++. ++.++.+.. |+..|+|+.
T Consensus 210 dlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~p--------hsadir~vr 280 (350)
T KOG0641|consen 210 DLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHP--------HSADIRCVR 280 (350)
T ss_pred eeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCC--------CccceeEEE
Confidence 98754433 1 1 124666 99999999999999999999999998 888988888 999999999
Q ss_pred ECCCCCEEEEEEcCCcEEEEeccCCe----eEEEeccccccceeeeeecCCC
Q 002753 315 WTPDNSAFAVGWKSRGLTVWSVSGCR----LMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 315 ~spdg~~Lasg~~dg~v~vW~~~~~~----l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
|||...++.+++.|..|++-|+.|.. .+....+| .+.+-.+.|+|.+
T Consensus 281 fsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~d 331 (350)
T KOG0641|consen 281 FSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQD 331 (350)
T ss_pred eCCCceEEEEecccceEEEeecccchhhcCceEEEEec-cCceEEEEecCcc
Confidence 99999999999999999999998753 11122233 4445555565554
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.82 E-value=9.7e-19 Score=177.96 Aligned_cols=263 Identities=12% Similarity=0.137 Sum_probs=199.9
Q ss_pred CcEEEEeecCCccceeeeccccc--ccCCCCcEE-EEE-c--CCCCEEEEEecCCeEEEEEccCCCcce-EEEeeccCCC
Q 002753 230 GQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAVC-ASI-A--PEQQILAVGTRRGVVELYDLAESASLI-RTVSLYDWGY 302 (884)
Q Consensus 230 G~~~~~~~~d~~i~~w~~~~~~~--~~~h~~~v~-va~-s--p~~~~la~g~~dg~v~lw~~~~~~~~~-~~l~~~~~~~ 302 (884)
++.+++++-|++.++|+..-... ..||.+++. +++ . +....+++++.|.++++|.++. +... ...+ .
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~-~~~~~~~~~-----~ 188 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV-GENKVKALK-----V 188 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC-chhhhhHHh-----H
Confidence 78899999999999998654322 278998886 443 3 3345799999999999999987 4322 1111 1
Q ss_pred CCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc-------------------------CCeeEEEeccccccceeeee
Q 002753 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-------------------------GCRLMSTIRQISLSSISSPI 357 (884)
Q Consensus 303 ~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~-------------------------~~~l~~tl~~~~~~~v~s~~ 357 (884)
..+|.++|.+++-.+||..+++|+.|.++++|+.. .+..+.++.+| ...|+++.
T Consensus 189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH-t~~Vs~V~ 267 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH-TEPVSSVV 267 (423)
T ss_pred hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc-ccceeeEE
Confidence 11499999999999999999999999999999931 12346677788 88999999
Q ss_pred ecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEec
Q 002753 358 VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (884)
Q Consensus 358 ~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~ 431 (884)
|++. ....+++ +++.||..++++.....+ ...+.+++. .+.+++||.|.-+++||-..++..+
T Consensus 268 w~d~-----~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~----- 336 (423)
T KOG0313|consen 268 WSDA-----TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV----- 336 (423)
T ss_pred EcCC-----CceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce-----
Confidence 9885 4555665 999999999988777655 334544444 7788999999999999988887654
Q ss_pred CCCCceeEEEeecccccccCCCceEEEEEccC-CCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEE
Q 002753 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKII 509 (884)
Q Consensus 432 ~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~d-G~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~l 509 (884)
...+|.+|+..|.++.|+|. -.++++|+.|+++ +||+++-+-.+|.-..|. -.|..+.|....+
T Consensus 337 ------------v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~--DKvl~vdW~~~~~ 402 (423)
T KOG0313|consen 337 ------------VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN--DKVLSVDWNEGGL 402 (423)
T ss_pred ------------eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCC--ceEEEEeccCCce
Confidence 23679999999999999997 5578899999999 999998765666544443 3588899998755
Q ss_pred EEEEEecCCCeEEEEEeeC
Q 002753 510 VVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 510 v~~~~~~~~~~~elr~y~~ 528 (884)
|+.+ +.+-.||+|.-
T Consensus 403 IvSG----GaD~~l~i~~~ 417 (423)
T KOG0313|consen 403 IVSG----GADNKLRIFKG 417 (423)
T ss_pred EEec----cCcceEEEecc
Confidence 5431 34467888754
No 68
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.8e-18 Score=171.88 Aligned_cols=286 Identities=14% Similarity=0.152 Sum_probs=187.2
Q ss_pred CceEEEEEecCeEEEEE-ccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEe-cCcEEEEEEEEe
Q 002753 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQI 98 (884)
Q Consensus 21 ~~~vv~fspdg~lla~~-t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t-~~g~l~l~~l~~ 98 (884)
....++||.||+.||++ +|++|+||+++ .-. ... .|..+.--++++-+.|.|+||-+-+++.. ..+.|++|.+..
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~-DF~-~~e-Hr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVR-DFE-NKE-HRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecc-hhh-hhh-hhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 45669999999999998 57799999995 321 112 23333333578889999999998766654 456899999864
Q ss_pred cCceeecCCCCCCCceeeeeeeeeeccccccccceeEE--EEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCC
Q 002753 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (884)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~ 176 (884)
.....+ ..+......+++....+ ..+. .++.+...++.++.+..|.+|+..++..+
T Consensus 165 ~~dG~~----~~~~v~~D~~~f~~kh~-------v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~----------- 222 (420)
T KOG2096|consen 165 KTDGSG----SHHFVHIDNLEFERKHQ-------VDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQ----------- 222 (420)
T ss_pred cccCCC----Ccccccccccccchhcc-------cceEEEeecCCceEEEEecCCCcEEEEecCCceee-----------
Confidence 433111 00001111111111111 1121 33445567777888888877554433211
Q ss_pred ccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccc-----
Q 002753 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----- 251 (884)
Q Consensus 177 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~----- 251 (884)
+|.-+...+..++++||||.++++.-.-.+++|...-.+
T Consensus 223 ------------------------------------~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fq 266 (420)
T KOG2096|consen 223 ------------------------------------SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQ 266 (420)
T ss_pred ------------------------------------eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchh
Confidence 111111225568899999999988888888999865221
Q ss_pred ------cccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCC---CcceEEEeeccCCCCCCCCcCeEEEEECCCCCE
Q 002753 252 ------KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES---ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (884)
Q Consensus 252 ------~~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~---~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~ 321 (884)
.+.||..+|. .+|||+.+.+++.+.||++||||++-. ++-.+.++....+....-..++ .++.||.|..
T Consensus 267 ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~ 345 (420)
T KOG2096|consen 267 EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDS 345 (420)
T ss_pred hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcE
Confidence 1378999998 999999999999999999999998641 1111122221111111123344 7999999999
Q ss_pred EEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 002753 322 FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (884)
Q Consensus 322 Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~ 373 (884)
||++.. .+++++....+....+++.-+...+++++|+++| .++++.+
T Consensus 346 lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g----~~~atcG 392 (420)
T KOG2096|consen 346 LAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDG----KYIATCG 392 (420)
T ss_pred EEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCC----cEEeeec
Confidence 999887 7899999998887777776446788999999988 6666543
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.81 E-value=1.5e-18 Score=196.98 Aligned_cols=266 Identities=17% Similarity=0.216 Sum_probs=214.6
Q ss_pred eEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEE
Q 002753 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (884)
Q Consensus 134 ~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 213 (884)
.+.+....++.+..++.++.++. |+....... ...+.+|.+.|..
T Consensus 210 ~~~~~q~~~~~~~~~s~~~tl~~--~~~~~~~~i---------------------------------~~~l~GH~g~V~~ 254 (537)
T KOG0274|consen 210 VVLCLQLHDGFFKSGSDDSTLHL--WDLNNGYLI---------------------------------LTRLVGHFGGVWG 254 (537)
T ss_pred hhhhheeecCeEEecCCCceeEE--eecccceEE---------------------------------EeeccCCCCCcee
Confidence 34455555677888888888855 554332211 1224567777877
Q ss_pred EEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCC
Q 002753 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA 289 (884)
Q Consensus 214 i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~ 289 (884)
+++ ..-+..+++++.|.++++||..++++. .+|...++ +.. ....+++|+.|.+|++|++++ +
T Consensus 255 l~~----------~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n-~ 321 (537)
T KOG0274|consen 255 LAF----------PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTN-G 321 (537)
T ss_pred EEE----------ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccC-c
Confidence 774 334778899999999999999888875 68888776 443 566788899999999999998 8
Q ss_pred cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce
Q 002753 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (884)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l 369 (884)
..++++.+ |+++|+++... +.++++|+.|++|+||++..++++.++.+| ...|.++.+.+. ..+
T Consensus 322 ~~l~l~~~--------h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~~-----~~~ 385 (537)
T KOG0274|consen 322 ACLNLLRG--------HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDSE-----NRL 385 (537)
T ss_pred ceEEEecc--------ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC-cceEEEEEecCc-----ceE
Confidence 88999988 99999999988 889999999999999999999999999998 889999987653 456
Q ss_pred eecc---eeEEEecCCc-eEEEEecCCcceEEEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeec
Q 002753 370 MSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 444 (884)
Q Consensus 370 ~sg~---~i~~W~~~~~-~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~ 444 (884)
.+|+ ++++||.++. ++..+..+|..-+..+.+ .+.+++++.|+++++||...++.
T Consensus 386 ~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~-------------------- 445 (537)
T KOG0274|consen 386 LSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC-------------------- 445 (537)
T ss_pred EeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCce--------------------
Confidence 6776 8999999999 999999999888877777 88999999999999999877765
Q ss_pred cccccc-CCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcE
Q 002753 445 PVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (884)
Q Consensus 445 p~~~~~-~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w 485 (884)
..++.+ |...|.++++. -..+++++.||.+ +||+.++.-
T Consensus 446 ~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 446 LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 234444 56778888876 4678899999999 999998863
No 70
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.8e-18 Score=168.91 Aligned_cols=301 Identities=14% Similarity=0.108 Sum_probs=179.7
Q ss_pred hhhc-cceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecC
Q 002753 64 VQRE-GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN 142 (884)
Q Consensus 64 l~~~-G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~ 142 (884)
+..| +.+++++||.||+.||+++.|+.|++|++..=. .+.|. .+ +..+..+..+...|++|-
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~----~~eHr-----------~~--R~nve~dhpT~V~FapDc 144 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE----NKEHR-----------CI--RQNVEYDHPTRVVFAPDC 144 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhh----hhhhh-----------Hh--hccccCCCceEEEECCCc
Confidence 4444 566899999999999999999999999995211 11111 00 111122233445678888
Q ss_pred CeEEEEecCC-cEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccc-cCCCccEEEEEEcCCc
Q 002753 143 KHMLLGLSDG-SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK-FPISSAIIWLELCLPM 220 (884)
Q Consensus 143 ~~llv~~~~g-~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~ 220 (884)
..+++...+| .+.++..+....+..... .++. |+ ..+ .-++..+.++-
T Consensus 145 ~s~vv~~~~g~~l~vyk~~K~~dG~~~~~----------~v~~--D~-------------~~f~~kh~v~~i~iG----- 194 (420)
T KOG2096|consen 145 KSVVVSVKRGNKLCVYKLVKKTDGSGSHH----------FVHI--DN-------------LEFERKHQVDIINIG----- 194 (420)
T ss_pred ceEEEEEccCCEEEEEEeeecccCCCCcc----------cccc--cc-------------cccchhcccceEEEe-----
Confidence 8888888777 566655443333322110 0000 00 000 11223333322
Q ss_pred ceEEEEEcCCcEEEEeecCCccceeeeccccccc----CCCCcEEEEEcCCCCEEEEEecCCeEEEEEccC--CC-----
Q 002753 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL----GSGDAVCASIAPEQQILAVGTRRGVVELYDLAE--SA----- 289 (884)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~----~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~--~~----- 289 (884)
+..+++++++++.|.++-+|++. ++.+. ....-..+++||+|++||+++..-.|++|.+-- .+
T Consensus 195 -----iA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev 268 (420)
T KOG2096|consen 195 -----IAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEV 268 (420)
T ss_pred -----ecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhh
Confidence 34567788888889899999987 54431 111222389999999999999999999999732 12
Q ss_pred cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce
Q 002753 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (884)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l 369 (884)
..+..+++ |...|...+|||+.+.+++.+.||+|++||+.-.- ...+ |. ..+
T Consensus 269 ~rvf~LkG--------H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY---~~~q-------------Dp----k~L 320 (420)
T KOG2096|consen 269 KRVFSLKG--------HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY---EAGQ-------------DP----KIL 320 (420)
T ss_pred hhhheecc--------chhheeeeeeCCCcceeEEEecCCcEEEeeccceE---ecCC-------------Cc----hHh
Confidence 12335556 99999999999999999999999999999985321 0000 00 111
Q ss_pred eecceeEEEecCCceEEEEecCCcceEEEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeeccccc
Q 002753 370 MSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (884)
Q Consensus 370 ~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~ 448 (884)
..|+ +-.-+.++..+ . +.+++ ++.+ +.+...++++.....+++ .|.--
T Consensus 321 k~g~-~pl~aag~~p~-R---------L~lsP~g~~l-A~s~gs~l~~~~se~g~~-------------------~~~~e 369 (420)
T KOG2096|consen 321 KEGS-APLHAAGSEPV-R---------LELSPSGDSL-AVSFGSDLKVFASEDGKD-------------------YPELE 369 (420)
T ss_pred hcCC-cchhhcCCCce-E---------EEeCCCCcEE-EeecCCceEEEEcccCcc-------------------chhHH
Confidence 1111 11111111111 1 22333 2222 222333444444344443 25555
Q ss_pred ccCCCceEEEEEccCCCEEEEEeCCceE
Q 002753 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (884)
Q Consensus 449 ~~~~~~I~~va~S~dG~~lavag~dg~i 476 (884)
..|...|.+++|++||+++|++|.+-..
T Consensus 370 ~~h~~~Is~is~~~~g~~~atcGdr~vr 397 (420)
T KOG2096|consen 370 DIHSTTISSISYSSDGKYIATCGDRYVR 397 (420)
T ss_pred HhhcCceeeEEecCCCcEEeeecceeee
Confidence 6788999999999999999999987755
No 71
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.2e-18 Score=168.33 Aligned_cols=217 Identities=14% Similarity=0.231 Sum_probs=171.2
Q ss_pred CCCcEE-EEEcCC-CCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEE
Q 002753 256 SGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLT 332 (884)
Q Consensus 256 h~~~v~-va~sp~-~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~ 332 (884)
-.+.+. ++||+. ...+++++.||+++|||.....++++.++. |...|.++.|++ +++.+++++.|++||
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE--------H~~EV~Svdwn~~~r~~~ltsSWD~TiK 130 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE--------HKREVYSVDWNTVRRRIFLTSSWDGTIK 130 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh--------hhhheEEeccccccceeEEeeccCCceE
Confidence 356777 999986 467888899999999998775677888887 999999999998 677888889999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee----ccee
Q 002753 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCC 405 (884)
Q Consensus 333 vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~ 405 (884)
+|+..-..-++|+.+| .+-|...+|+|... ..+++.+ +.++||.+..-..+.+..|...+.+.++ ...+
T Consensus 131 LW~~~r~~Sv~Tf~gh-~~~Iy~a~~sp~~~---nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 131 LWDPNRPNSVQTFNGH-NSCIYQAAFSPHIP---NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred eecCCCCcceEeecCC-ccEEEEEecCCCCC---CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence 9999988899999998 77899999999852 3444443 8999998765444557788888888887 4478
Q ss_pred ecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccC-CCEEEEEeCCceE-EEEccCC
Q 002753 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQK 483 (884)
Q Consensus 406 ~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~d-G~~lavag~dg~i-iwd~~s~ 483 (884)
+||+.|+.++.||+..-... ...+.+|.-.||.++|||. ...||+++.|-++ +||...+
T Consensus 207 ~Tg~vd~~vr~wDir~~r~p-------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRTP-------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred EecCCCceEEEEehhhcccc-------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 99999999999998776541 2567799999999999998 5689999999999 9998754
Q ss_pred cEEEecCccceeeeEEEEEEEe
Q 002753 484 KWRVFGDITQEQKIQSKGLLWL 505 (884)
Q Consensus 484 ~w~~f~~~~~e~~~~v~~~~W~ 505 (884)
.- ..+...+..+| |.|+.|.
T Consensus 268 ds-~~e~~~~HtEF-v~g~Dws 287 (311)
T KOG0277|consen 268 DS-AIETVDHHTEF-VCGLDWS 287 (311)
T ss_pred hh-hhhhhhccceE-Eeccccc
Confidence 31 11222233333 5566664
No 72
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.80 E-value=1.3e-15 Score=169.24 Aligned_cols=444 Identities=16% Similarity=0.169 Sum_probs=277.7
Q ss_pred CeEEE-EEccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCC
Q 002753 31 NGLLL-IASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (884)
Q Consensus 31 g~lla-~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~ 109 (884)
+.+++ ++.+.+.++||++ ...++..-... ...+.++ +.++.+.+++..+ .|-+|.- ++..
T Consensus 46 ~~~~vtt~vgksfqvYd~~-kl~ll~vs~~l------p~~I~al--as~~~~vy~A~g~-~i~~~~r--gk~i------- 106 (910)
T KOG1539|consen 46 STFYVTTCVGKSFQVYDVN-KLNLLFVSKPL------PDKITAL--ASDKDYVYVASGN-KIYAYAR--GKHI------- 106 (910)
T ss_pred ceEEEEEecCceEEEEecc-ceEEEEecCCC------CCceEEE--EecCceEEEecCc-EEEEEEc--cceE-------
Confidence 33444 4468899999996 54444432211 1233444 4455566666544 3544432 1110
Q ss_pred CCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCC
Q 002753 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG 189 (884)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 189 (884)
+ .. ...+...|.-+.+-+++++....++.+.+|..... ..+.. +. .
T Consensus 107 ------~-------~~--~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~-~~e~~----------l~-~------- 152 (910)
T KOG1539|consen 107 ------R-------HT--TLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSI-QEELY----------LQ-S------- 152 (910)
T ss_pred ------E-------EE--eccccceEEEEeeecceEEEEEccCcEEEEEeccc-ccccc----------cc-c-------
Confidence 0 00 01111234445556888998888998887543321 11100 00 0
Q ss_pred cceecCCCccccccccCCCccEEEEEEcCCc-ceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEE
Q 002753 190 LASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASI 264 (884)
Q Consensus 190 l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~ 264 (884)
.........|+++.+.+.+ |..+..+.+| .+++|+..+++.. .++.+.++ +.-
T Consensus 153 ------------~~~~~~~~~Ital~HP~TYLNKIvvGs~~G----------~lql~Nvrt~K~v~~f~~~~s~IT~ieq 210 (910)
T KOG1539|consen 153 ------------TFLKVEGDFITALLHPSTYLNKIVVGSSQG----------RLQLWNVRTGKVVYTFQEFFSRITAIEQ 210 (910)
T ss_pred ------------eeeeccCCceeeEecchhheeeEEEeecCC----------cEEEEEeccCcEEEEecccccceeEecc
Confidence 0011122237777664433 4444444444 4556777766543 45556565 888
Q ss_pred cCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCC-EEEEEEcCCcEEEEeccCCeeEE
Q 002753 265 APEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMS 343 (884)
Q Consensus 265 sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~dg~v~vW~~~~~~l~~ 343 (884)
+|--..+|+|..||+|.+++++. ++.+..++. ..|+|++++|..||. .+|+|...|.+.+||+.+.++..
T Consensus 211 sPaLDVVaiG~~~G~ViifNlK~-dkil~sFk~--------d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~ 281 (910)
T KOG1539|consen 211 SPALDVVAIGLENGTVIIFNLKF-DKILMSFKQ--------DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN 281 (910)
T ss_pred CCcceEEEEeccCceEEEEEccc-CcEEEEEEc--------cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeee
Confidence 89899999999999999999998 788888875 459999999999998 55666676889999999999988
Q ss_pred EeccccccceeeeeecCCCCCCccceeecc---eeEEE--ecCC--ceEEEEecCCcceEEEEee----cceeecccCCC
Q 002753 344 TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW--DEYG--YRLYAIEEGSSERVLIFSF----GKCCLNRGVSG 412 (884)
Q Consensus 344 tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W--~~~~--~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~ 412 (884)
.++..+.+++....|-|.. ..+++.. +.+.| |.+. .++++...||..+..++.+ +..+.+.+.|+
T Consensus 282 v~~nah~~sv~~~~fl~~e----pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Dr 357 (910)
T KOG1539|consen 282 VTRNAHYGSVTGATFLPGE----PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDR 357 (910)
T ss_pred eeeccccCCcccceecCCC----ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCc
Confidence 8875446778877777764 4445444 55555 4333 3677777889888766666 67889999999
Q ss_pred CceeeeeeecCCeEEEEe---------------------------cCCCC----------------ceeEE--------E
Q 002753 413 MTYARQVIYGEDRLLVVQ---------------------------SEDTD----------------ELKIL--------H 441 (884)
Q Consensus 413 ~~~~w~l~~~~~~~~i~~---------------------------~~~~~----------------~~~w~--------~ 441 (884)
+.+..++.+....--+.+ ....- ...|+ +
T Consensus 358 t~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~ 437 (910)
T KOG1539|consen 358 TLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRH 437 (910)
T ss_pred chhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccE
Confidence 887766543211100000 00000 11231 2
Q ss_pred eecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE-EecCccceeeeEEEEEEEe--CCEEEEEEEecC
Q 002753 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDS 517 (884)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~-~f~~~~~e~~~~v~~~~W~--~~~lv~~~~~~~ 517 (884)
.--|..+......+++++.|++|++..+|...|.| +||+++|.-+ .|+. .+.++..|+|++-. +..+|+|+
T Consensus 438 ~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-~~ah~~~V~gla~D~~n~~~vsa~---- 512 (910)
T KOG1539|consen 438 VLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-SPAHKGEVTGLAVDGTNRLLVSAG---- 512 (910)
T ss_pred EecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-CccccCceeEEEecCCCceEEEcc----
Confidence 22233444445679999999999999999999999 9999999765 4542 23344568877665 45577773
Q ss_pred CCeEEEEEeeCCCCCCcceEEEEecCCccEEEEccC--CEEEEEEcCCeEEEEEEE
Q 002753 518 SNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYE--DYILVTYRPFDVHIFHVK 571 (884)
Q Consensus 518 ~~~~elr~y~~~~l~~~~~l~~~~~~~~~~~~~~~~--~~llv~~~~~~i~i~~~~ 571 (884)
.+.-+.+|+.. +..++...++...+..+...+ +.+.++++|..|.++++.
T Consensus 513 -~~Gilkfw~f~---~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 513 -ADGILKFWDFK---KKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred -CcceEEEEecC---CcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence 44678999875 223555666666565555543 345557888999999886
No 73
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.80 E-value=4.5e-17 Score=171.06 Aligned_cols=358 Identities=16% Similarity=0.196 Sum_probs=230.6
Q ss_pred eEEEEEecCeEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCce
Q 002753 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (884)
Q Consensus 23 ~vv~fspdg~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~ 102 (884)
.+++|.++|..+..=+++.+.||+.+ . .. ..+... .+.|.+.+++.-.||+.|- +..|..|..|+=. ...
T Consensus 250 l~v~F~engdviTgDS~G~i~Iw~~~-~-~~---~~k~~~--aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~--y~k 319 (626)
T KOG2106|consen 250 LCVTFLENGDVITGDSGGNILIWSKG-T-NR---ISKQVH--AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN--YRK 319 (626)
T ss_pred EEEEEcCCCCEEeecCCceEEEEeCC-C-ce---EEeEee--ecCCceEEEEEecCccEee-cCccceEEecccc--ccc
Confidence 44789999987755578899999985 2 22 233322 4679999999999998777 9999999999821 110
Q ss_pred eecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceee
Q 002753 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (884)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~ 182 (884)
. ....+....+.++.++..+..+++|+..+.|..-+.+ ..+.+.
T Consensus 320 ~--------------------r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~----~~f~~~------------ 363 (626)
T KOG2106|consen 320 L--------------------RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE----NGFTLT------------ 363 (626)
T ss_pred c--------------------ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec----CCceEE------------
Confidence 0 0111234456688888888779999998888654332 222110
Q ss_pred cccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc-cCCCCcEE
Q 002753 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVC 261 (884)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-~~h~~~v~ 261 (884)
...+... ..-++..|+...+++++.|+.+.+|+..+..-- .-...+.|
T Consensus 364 ---------------------v~gh~de----------lwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~ 412 (626)
T KOG2106|consen 364 ---------------------VQGHGDE----------LWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAEC 412 (626)
T ss_pred ---------------------EEecccc----------eeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeE
Confidence 0111111 233556788889999999999999994433211 22245667
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc-CCe
Q 002753 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCR 340 (884)
Q Consensus 262 va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~-~~~ 340 (884)
+.|+|.| .+|.|...|...|.|.++ +.+-+++. .+.++++++|+|||.+||+|+.|+.|.++.+. +++
T Consensus 413 ~~fhpsg-~va~Gt~~G~w~V~d~e~--~~lv~~~~--------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGTATGRWFVLDTET--QDLVTIHT--------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred eeccCcc-eEEEeeccceEEEEeccc--ceeEEEEe--------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 9999999 999999999999988876 33444444 47889999999999999999999999999985 344
Q ss_pred eEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEeec------ceeecccCC
Q 002753 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFG------KCCLNRGVS 411 (884)
Q Consensus 341 l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~~------~~~~s~~~d 411 (884)
.......++.+.++.+.|++|+ +++.+.+ .++.|.+......... ..+.++ ...+.++.|
T Consensus 482 ~y~r~~k~~gs~ithLDwS~Ds----~~~~~~S~d~eiLyW~~~~~~~~ts~-------kDvkW~t~~c~lGF~v~g~s~ 550 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSSDS----QFLVSNSGDYEILYWKPSECKQITSV-------KDVKWATYTCTLGFEVFGGSD 550 (626)
T ss_pred EEEEeeeecCceeEEeeecCCC----ceEEeccCceEEEEEccccCccccee-------cceeeeeeEEEEEEEEecccC
Confidence 5555554434889999999998 7777655 7889966554432221 111110 011223333
Q ss_pred CCceeeeeeecCCeEEEEecCCCCcee---EEE--eecc-cccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002753 412 GMTYARQVIYGEDRLLVVQSEDTDELK---ILH--LNLP-VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 412 ~~~~~w~l~~~~~~~~i~~~~~~~~~~---w~~--~~~p-~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~ 480 (884)
++...-.. ...++-++..+++..... ... .+-| .+|.+|..-|.+++|+-+-..+.+.|.|..+ .|++
T Consensus 551 ~t~i~a~~-rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 551 GTDINAVA-RSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CchHHHhh-hhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 33211000 001111111111111100 000 0112 4788999999999999888888888899988 8875
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=9.5e-18 Score=176.27 Aligned_cols=273 Identities=15% Similarity=0.215 Sum_probs=187.3
Q ss_pred hhccceeEEEEcCCccE-EEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCC
Q 002753 65 QREGENLQAVWSPDTKL-IAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK 143 (884)
Q Consensus 65 ~~~G~~~~v~wsPDg~~-Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 143 (884)
+++..+.+++|||...+ +||++ .-.+.||+...-.....+ ..+ +. ...-.+|..|+.
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~----------------srF----k~-~v~s~~fR~DG~ 81 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTF----------------SRF----KD-VVYSVDFRSDGR 81 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhH----------------Hhh----cc-ceeEEEeecCCe
Confidence 46788899999997765 55544 446999987532211101 011 11 112235677888
Q ss_pred eEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceE
Q 002753 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (884)
Q Consensus 144 ~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (884)
.+++|-..|.+++++.+.. ... ..+..|..++..+.|++
T Consensus 82 LlaaGD~sG~V~vfD~k~r--~iL----------------------------------R~~~ah~apv~~~~f~~----- 120 (487)
T KOG0310|consen 82 LLAAGDESGHVKVFDMKSR--VIL----------------------------------RQLYAHQAPVHVTKFSP----- 120 (487)
T ss_pred EEEccCCcCcEEEeccccH--HHH----------------------------------HHHhhccCceeEEEecc-----
Confidence 8888889999999763210 100 12345667777767643
Q ss_pred EEEEcCCcEEEEeecCCccceeeeccccc---ccCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEccCCCcceEEEeec
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~---~~~h~~~v~-va~sp~-~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~ 298 (884)
.|+..++++++|+.++.|+..++.. +.+|++.+. .+++|. ...+++|+.||+||+||++..+..+..+.
T Consensus 121 ----~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-- 194 (487)
T KOG0310|consen 121 ----QDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-- 194 (487)
T ss_pred ----cCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--
Confidence 3556677777788888998876543 378999997 899996 55899999999999999987333333332
Q ss_pred cCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc-CCeeEEEeccccccceeeeeecCCCCCCccceeecceeEE
Q 002753 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQ 377 (884)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~-~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~ 377 (884)
|..+|.++.+-|.|..+|+++. +.++|||+. |+++.+....| ...|+++++..++ .
T Consensus 195 -------hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H-~KtVTcL~l~s~~----~---------- 251 (487)
T KOG0310|consen 195 -------HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNH-NKTVTCLRLASDS----T---------- 251 (487)
T ss_pred -------CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcc-cceEEEEEeecCC----c----------
Confidence 8899999999999999999998 799999998 66766666656 5677777765543 2
Q ss_pred EecCCceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEE
Q 002753 378 WDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (884)
Q Consensus 378 W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~ 457 (884)
.++|++.|+.++++++. +-++ ... ..-.+||.+
T Consensus 252 --------------------------rLlS~sLD~~VKVfd~t--~~Kv------------------v~s-~~~~~pvLs 284 (487)
T KOG0310|consen 252 --------------------------RLLSGSLDRHVKVFDTT--NYKV------------------VHS-WKYPGPVLS 284 (487)
T ss_pred --------------------------eEeecccccceEEEEcc--ceEE------------------EEe-eecccceee
Confidence 33556666666665521 1100 000 112358999
Q ss_pred EEEccCCCEEEEEeCCceE
Q 002753 458 VAASKDGMFLAVAGLHGLI 476 (884)
Q Consensus 458 va~S~dG~~lavag~dg~i 476 (884)
+++|||++.+++|..||++
T Consensus 285 iavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 285 IAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred EEecCCCceEEEeccccee
Confidence 9999999999999999999
No 75
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.79 E-value=3.4e-19 Score=176.77 Aligned_cols=278 Identities=14% Similarity=0.206 Sum_probs=198.4
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 002753 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 257 ~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~ 336 (884)
+.+-|..|||||+++++|+.||-|.+||..+ ++..+.++-..-..-.-+..+|.|++||.|...||+|+.||.|+||.+
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~-GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTT-GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhcc-chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 3455789999999999999999999999987 655443321100001126789999999999999999999999999999
Q ss_pred cCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee---cceeecccC
Q 002753 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGV 410 (884)
Q Consensus 337 ~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~ 410 (884)
.+|.|+..+...+...|+++.|+.|+ ..+++++ ++++-...+++++...+||+.-|....| |..+++++.
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSrD~----SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSRDN----SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEccCc----chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 99999999985458899999999998 7777776 8899999999999999999988844444 889999999
Q ss_pred CCCceeeeeeecCCeEEEEecCCCCceeEEEeeccccc--ccCCCceEEEEEccC-CCEEEEEeCCceE-EEEccCCcEE
Q 002753 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY--ISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQKKWR 486 (884)
Q Consensus 411 d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~--~~~~~~I~~va~S~d-G~~lavag~dg~i-iwd~~s~~w~ 486 (884)
|+++++|+...++. ..+| .+...+|.++-.-|. -..++++.+..++ +-+++..-.+
T Consensus 369 DgtvkvW~~KtteC--------------------~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr 428 (508)
T KOG0275|consen 369 DGTVKVWHGKTTEC--------------------LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR 428 (508)
T ss_pred CccEEEecCcchhh--------------------hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe
Confidence 99999999877664 2233 245678888877665 5688899999998 9999888778
Q ss_pred EecCccceee-eEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCC--CCCCcceEEEEecCCccE--EEEccCCEEEEEEc
Q 002753 487 VFGDITQEQK-IQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPI--VMDVYEDYILVTYR 561 (884)
Q Consensus 487 ~f~~~~~e~~-~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~--~l~~~~~l~~~~~~~~~~--~~~~~~~~llv~~~ 561 (884)
.|..-..|.. |....+.--++.+-+. ..+..+.||+.. .|...-.+++.+ ++ ...++.+.+.-+..
T Consensus 429 sfsSGkREgGdFi~~~lSpkGewiYci-----gED~vlYCF~~~sG~LE~tl~VhEkd----vIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 429 SFSSGKREGGDFINAILSPKGEWIYCI-----GEDGVLYCFSVLSGKLERTLPVHEKD----VIGLTHHPHQNLLASYSE 499 (508)
T ss_pred eeccCCccCCceEEEEecCCCcEEEEE-----ccCcEEEEEEeecCceeeeeeccccc----ccccccCcccchhhhhcc
Confidence 8865544443 3222222223333222 233456666653 232222222211 22 22345555555667
Q ss_pred CCeEEEE
Q 002753 562 PFDVHIF 568 (884)
Q Consensus 562 ~~~i~i~ 568 (884)
|+.+.+|
T Consensus 500 DgllKLW 506 (508)
T KOG0275|consen 500 DGLLKLW 506 (508)
T ss_pred cchhhhc
Confidence 7777776
No 76
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.2e-18 Score=163.54 Aligned_cols=234 Identities=15% Similarity=0.187 Sum_probs=190.1
Q ss_pred cCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeE
Q 002753 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVV 280 (884)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v 280 (884)
..+++.|..+.| .-||++.+++.+|.++++|+...+..+ .+|..-+. ++.+.|...+|+|+.|..|
T Consensus 14 ~~~qgaV~avry----------N~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 14 DCAQGAVRAVRY----------NVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cccccceEEEEE----------ccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence 345666777665 688999999999999999998877654 78888887 8999999999999999999
Q ss_pred EEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCC--eeEEEeccccccceeeeee
Q 002753 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIV 358 (884)
Q Consensus 281 ~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~--~l~~tl~~~~~~~v~s~~~ 358 (884)
.+||+.+ ++..+.+.+ |.+.|+.++|+-+...+++|+-|.++++||..+. +.++.+... .+.|.++..
T Consensus 84 ~vwDV~T-Gkv~Rr~rg--------H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si~v 153 (307)
T KOG0316|consen 84 QVWDVNT-GKVDRRFRG--------HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSIDV 153 (307)
T ss_pred EEEEccc-Ceeeeeccc--------ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEEEe
Confidence 9999999 999999999 9999999999999999999999999999999765 356666554 667888776
Q ss_pred cCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCC
Q 002753 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (884)
Q Consensus 359 s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~ 434 (884)
.. ..++.|+ +.+.++.+.+++..-.-+|+-.-+.|+. +...+.++.|+++++-+-.+|+
T Consensus 154 ~~------heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk----------- 216 (307)
T KOG0316|consen 154 AE------HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK----------- 216 (307)
T ss_pred cc------cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhH-----------
Confidence 43 3344554 8999999999887776666555566666 7788899999999886644433
Q ss_pred CceeEEEeecccccccCCCce--EEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002753 435 DELKILHLNLPVSYISQNWPV--QHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I--~~va~S~dG~~lavag~dg~i-iwd~~s~~ 484 (884)
+...|++|...= ..++++.....+++|+.||.+ +||+....
T Consensus 217 ---------lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 217 ---------LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred ---------HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 467889887542 346788888999999999999 99997654
No 77
>PTZ00420 coronin; Provisional
Probab=99.79 E-value=4.6e-17 Score=185.57 Aligned_cols=238 Identities=14% Similarity=0.127 Sum_probs=167.8
Q ss_pred CCccceeeecccc---cccCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEccCCCc-------ceEEEeeccCCCCCCC
Q 002753 239 KKGLKLAEFIKID---KELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESAS-------LIRTVSLYDWGYSMDD 306 (884)
Q Consensus 239 d~~i~~w~~~~~~---~~~~h~~~v~-va~sp~-~~~la~g~~dg~v~lw~~~~~~~-------~~~~l~~~~~~~~~~h 306 (884)
.+.+++|+..... .+.+|.+.+. ++|+|+ +.+||+|+.||+|+|||+.+.+. .+..+.+ |
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g--------H 124 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG--------H 124 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec--------C
Confidence 3456677644322 2368988887 999997 78999999999999999976222 1224445 9
Q ss_pred CcCeEEEEECCCCCE-EEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCC
Q 002753 307 TGPVSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (884)
Q Consensus 307 ~~~V~~l~~spdg~~-Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~ 382 (884)
.+.|.+++|+|++.. ||+|+.|++|++||+.++....++. + ...+.+++|+|++ ..+++++ .+++|++.+
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~-~~~V~SlswspdG----~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-M-PKKLSSLKWNIKG----NLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-c-CCcEEEEEECCCC----CEEEEEecCCEEEEEECCC
Confidence 999999999999875 5789999999999999888777765 3 4679999999998 7777664 899999999
Q ss_pred ceEEEEecCCcceE-----EE--Eee-cceeecccCCC----CceeeeeeecCCeEEEEecCCCCceeEEEeeccccccc
Q 002753 383 YRLYAIEEGSSERV-----LI--FSF-GKCCLNRGVSG----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (884)
Q Consensus 383 ~~l~~~~~~~~~~v-----~~--~~~-~~~~~s~~~d~----~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~ 450 (884)
++......+|.+.+ +. ++. ++.+++++.|+ ++++|++......+.. .....
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~-----------------~~ld~ 261 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT-----------------MSIDN 261 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE-----------------EEecC
Confidence 99988888887643 21 223 56778777664 6999998754432110 01122
Q ss_pred CCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEE
Q 002753 451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKII 509 (884)
Q Consensus 451 ~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~l 509 (884)
+.+.+.....+++|.++++|+.|+.+ +|++..+.-..+. +.. ..-...|+++.++..
T Consensus 262 ~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~-~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 262 ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN-EYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec-ccc-cCCCccceEEccccc
Confidence 33444444456679999999999999 9999877433221 111 112245666665443
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.79 E-value=1e-18 Score=179.50 Aligned_cols=252 Identities=16% Similarity=0.189 Sum_probs=189.8
Q ss_pred EEcCCcEEEEeecCCccceeeeccccc-----ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeecc
Q 002753 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (884)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~~-----~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~ 299 (884)
+.++...+++++.|..+++|+....+. +.|....+. +.|.++++.+..++.|+.+++|+++. .+...++.+
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-~r~~~TLsG-- 259 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-LRLRHTLSG-- 259 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-hhhhhhhcc--
Confidence 467767899999999999998765431 134445565 99999999999999999999999998 788889999
Q ss_pred CCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeE
Q 002753 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~ 376 (884)
|++.|+++.|.-....+++|+.|.+++.||+....+..+.-.. +.++.+..+ ...++||. +++
T Consensus 260 ------HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~------~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 260 ------HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS------ISDVISGHFDKKVR 325 (459)
T ss_pred ------cccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccceEec------ceeeeecccccceE
Confidence 9999999999998888999999999999999988777665432 223333322 14455665 899
Q ss_pred EEecCCceEEEEecCCcceE--EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCC
Q 002753 377 QWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (884)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~ 453 (884)
+||..+..+......+. .| +.+++ +..+++.+.|.++.+.++...+-+.. ..-+.-..+|+
T Consensus 326 fwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~--------------~sA~g~k~asD- 389 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT--------------FSAEGFKCASD- 389 (459)
T ss_pred EEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEE--------------eeccccccccc-
Confidence 99999988887776543 77 44555 77888889999999988766544321 11123334555
Q ss_pred ceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEe--CCEEEEE
Q 002753 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVC 512 (884)
Q Consensus 454 ~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~lv~~ 512 (884)
.+.+.|||||.|+|+||.||.+ +|++.+++...-......+ -.|..+.|. +.++++|
T Consensus 390 -wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~-~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 390 -WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN-AAITSLSWNPSGSGLLSA 449 (459)
T ss_pred -cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC-cceEEEEEcCCCchhhcc
Confidence 5689999999999999999999 9999999865433333222 147788896 6777776
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=9.5e-19 Score=188.91 Aligned_cols=222 Identities=17% Similarity=0.215 Sum_probs=186.1
Q ss_pred cCCcEEEEeecCCccceeeeccccc---------ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCC-cceEEEe
Q 002753 228 SNGQLMSCSVSKKGLKLAEFIKIDK---------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVS 296 (884)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~~---------~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~-~~~~~l~ 296 (884)
|.|+++++++.|+.++.|+...... ...|.+.+. ++...+++.+.+++.|-+|++|+..... .++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 6788999999999999998653221 256888888 8888899999999999999999998732 5666777
Q ss_pred eccCCCCCCCCcCeEEEEE-CCCCCEEEEEEcCCcEEEEeccCC--eeE--------EEec-cccccceeeeeecCCCCC
Q 002753 297 LYDWGYSMDDTGPVSCIAW-TPDNSAFAVGWKSRGLTVWSVSGC--RLM--------STIR-QISLSSISSPIVKPNQDC 364 (884)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~-spdg~~Lasg~~dg~v~vW~~~~~--~l~--------~tl~-~~~~~~v~s~~~s~~~~~ 364 (884)
. |+..|.|++. .++...+|+|+-|+.|.+||+..+ ++. +++. ++ ..++.+++..+++
T Consensus 115 ~--------H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~-k~siYSLA~N~t~-- 183 (735)
T KOG0308|consen 115 T--------HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP-KDSIYSLAMNQTG-- 183 (735)
T ss_pred c--------ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC-ccceeeeecCCcc--
Confidence 7 9999999999 889999999999999999999866 222 2333 33 5678888887877
Q ss_pred Cccceeecc---eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCcee
Q 002753 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (884)
Q Consensus 365 ~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~ 438 (884)
..+++|+ -+++|++.+.+-++.++||...|.++-. |+.++++|.|+++++|++.+...
T Consensus 184 --t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC-------------- 247 (735)
T KOG0308|consen 184 --TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC-------------- 247 (735)
T ss_pred --eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce--------------
Confidence 7888887 7899999999999989999999855544 89999999999999999987665
Q ss_pred EEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002753 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (884)
Q Consensus 439 w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s 482 (884)
..+|..|...|+++..+|+-.++++||+||.+ .=|+.+
T Consensus 248 ------l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 248 ------LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ------eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 66789999999999999999999999999998 666654
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=1.5e-17 Score=161.55 Aligned_cols=254 Identities=13% Similarity=0.199 Sum_probs=172.9
Q ss_pred eEEEEEecCeEEEEEc-cCeEEEEecCCceeEEEEEeeChHhhh-hccceeEEEEcC-CccEEEEEecCcEEEEEEEEec
Q 002753 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQ-REGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQIT 99 (884)
Q Consensus 23 ~vv~fspdg~lla~~t-~~~v~IW~~~~~~~~l~~~~r~~~sl~-~~G~~~~v~wsP-Dg~~Lav~t~~g~l~l~~l~~~ 99 (884)
.-|+++.||+.||+++ +.++.+|+++ +.. + +...... +.+.+..++|.| ....+|+++++..+++|++..+
T Consensus 24 ~Sv~wn~~g~~lasgs~dktv~v~n~e-~~r----~-~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 24 HSVAWNCDGTKLASGSFDKTVSVWNLE-RDR----F-RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred eEEEEcccCceeeecccCCceEEEEec-chh----h-hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 4489999999999985 7899999996 321 1 1111111 234566788886 5568999999999999999866
Q ss_pred CceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccc
Q 002753 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (884)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i 179 (884)
+.-.... ..+.+ ...+.++++++++++..+..|..++-. .....
T Consensus 98 k~~~~i~---------------------~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r--~~~~~------------ 141 (313)
T KOG1407|consen 98 KCTARIE---------------------TKGEN-INITWSPDGEYIAVGNKDDRITFIDAR--TYKIV------------ 141 (313)
T ss_pred cEEEEee---------------------ccCcc-eEEEEcCCCCEEEEecCcccEEEEEec--cccee------------
Confidence 5322111 01111 123557788889988888887765421 11100
Q ss_pred eeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccccc---ccCC
Q 002753 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGS 256 (884)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~---~~~h 256 (884)
.-...+..+..+.|+. ++.+++....-|++.+......+. +..|
T Consensus 142 -----------------------~~~~~~~e~ne~~w~~----------~nd~Fflt~GlG~v~ILsypsLkpv~si~AH 188 (313)
T KOG1407|consen 142 -----------------------NEEQFKFEVNEISWNN----------SNDLFFLTNGLGCVEILSYPSLKPVQSIKAH 188 (313)
T ss_pred -----------------------ehhcccceeeeeeecC----------CCCEEEEecCCceEEEEeccccccccccccC
Confidence 0011233455666643 334444444444444433222222 2456
Q ss_pred C-CcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 002753 257 G-DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (884)
Q Consensus 257 ~-~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~ 335 (884)
. ..+|+.|+|+|+++|+|++|..+.|||+++ --+.+.+.. +.-+|+.++||.||++||+|++|..|-|=+
T Consensus 189 ~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isR--------ldwpVRTlSFS~dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 189 PSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISR--------LDWPVRTLSFSHDGRMLASASEDHFIDIAE 259 (313)
T ss_pred CcceEEEEECCCCceEeeccccceeeccChhH-hhhheeecc--------ccCceEEEEeccCcceeeccCccceEEeEe
Confidence 5 466799999999999999999999999988 788888888 777899999999999999999999999999
Q ss_pred ccCCeeEEEeccccccceeeeeecCCC
Q 002753 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
+.+|..+..+.- .++..+++|+|..
T Consensus 260 vetGd~~~eI~~--~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 260 VETGDRVWEIPC--EGPTFTVAWHPKR 284 (313)
T ss_pred cccCCeEEEeec--cCCceeEEecCCC
Confidence 999887776653 4556777777764
No 81
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=2.3e-16 Score=171.89 Aligned_cols=392 Identities=13% Similarity=0.102 Sum_probs=247.2
Q ss_pred ceeEEEEcC---CccEEEEEecCcEEEEEEEEecCceee----cCCC----CCCCceeeeeeeeeeccccccccceeEEE
Q 002753 69 ENLQAVWSP---DTKLIAVVTSSLYLHIFKVQITEKSIQ----IGGK----QPSGLFFIKISLVLNEQLPFAEKGLSVSN 137 (884)
Q Consensus 69 ~~~~v~wsP---Dg~~Lav~t~~g~l~l~~l~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~v~~ 137 (884)
-+.+++|+. |.-+||+++.|.+||||++......-. .... ...-..+..+.+.......+.++++-|.+
T Consensus 193 WIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~s 272 (764)
T KOG1063|consen 193 WIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYS 272 (764)
T ss_pred hhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEE
Confidence 345666654 445899999999999999965542110 0000 00011222333444555556688888888
Q ss_pred Ee--ecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEE
Q 002753 138 IV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (884)
Q Consensus 138 i~--~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~ 215 (884)
+. +.+..|+.++.|.++.+ |..+.....=.. .++ +-.|.
T Consensus 273 v~W~p~~~~LLSASaDksmii--W~pd~~tGiWv~-------~vR------------------------------lGe~g 313 (764)
T KOG1063|consen 273 VWWHPEGLDLLSASADKSMII--WKPDENTGIWVD-------VVR------------------------------LGEVG 313 (764)
T ss_pred EEEccchhhheecccCcceEE--EecCCccceEEE-------EEE------------------------------eeccc
Confidence 74 44457888888998866 544433211000 000 00001
Q ss_pred EcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc------cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCC
Q 002753 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES 288 (884)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~------~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~ 288 (884)
.+...-..+.+++++..+++.+..|..++|.......| .||.+.|. ++|+|.|.+|.+.+.|.|-|||---..
T Consensus 314 g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~ 393 (764)
T KOG1063|consen 314 GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR 393 (764)
T ss_pred ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence 11111123445778887777777777788874433332 68999999 999999999999999999999865421
Q ss_pred CcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccC----------C-----e-------------
Q 002753 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG----------C-----R------------- 340 (884)
Q Consensus 289 ~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~----------~-----~------------- 340 (884)
....+.+...+. |.-..+|+++-+....+++|.+.+-+|+++... + .
T Consensus 394 q~~wHEiaRPQi-----HGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG 468 (764)
T KOG1063|consen 394 QQEWHEIARPQI-----HGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG 468 (764)
T ss_pred ccceeeeccccc-----ccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence 222333333232 777899999999767788888889999997610 0 0
Q ss_pred ----eEE--------------------------------------------EeccccccceeeeeecCCCCCCccceeec
Q 002753 341 ----LMS--------------------------------------------TIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (884)
Q Consensus 341 ----l~~--------------------------------------------tl~~~~~~~v~s~~~s~~~~~~~~~l~sg 372 (884)
.+. .+.|| ..+|.+++.+|++ +.++|+
T Consensus 469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~g----nliASa 543 (764)
T KOG1063|consen 469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISPTG----NLIASA 543 (764)
T ss_pred ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC-ceeEEEEEecCCC----CEEeeh
Confidence 000 00112 2367788888887 777766
Q ss_pred c--------eeEEEecCCceEEEEecCCcceE--EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEE
Q 002753 373 T--------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (884)
Q Consensus 373 ~--------~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~ 441 (884)
. -+++|+..+-.....+.+|+-.| ..|++ ++.+++.|.|.+..+|....+...- +.
T Consensus 544 CKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e----------~~--- 610 (764)
T KOG1063|consen 544 CKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE----------FR--- 610 (764)
T ss_pred hhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh----------hh---
Confidence 4 68899988766666778998888 45555 9999999999999999874333210 00
Q ss_pred eecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecC-ccceeeeEEEEEEEeC------CEEEEEE
Q 002753 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLG------KIIVVCN 513 (884)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~-~~~e~~~~v~~~~W~~------~~lv~~~ 513 (884)
-.....|.--|+.+.|+||++++|+|++|..+ +|.....+=+.... ........|+.+.|.+ ..+|+.+
T Consensus 611 ---fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavG 687 (764)
T KOG1063|consen 611 ---FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVG 687 (764)
T ss_pred ---hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEE
Confidence 11255788889999999999999999999999 99988774221111 1112223466666652 1233332
Q ss_pred EecCCCeEEEEEeeCC
Q 002753 514 YIDSSNTYELLFYPRY 529 (884)
Q Consensus 514 ~~~~~~~~elr~y~~~ 529 (884)
-...+|.+|.++
T Consensus 688 ----le~GeI~l~~~~ 699 (764)
T KOG1063|consen 688 ----LEKGEIVLWRRK 699 (764)
T ss_pred ----ecccEEEEEecc
Confidence 234688888864
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.5e-17 Score=165.74 Aligned_cols=221 Identities=15% Similarity=0.248 Sum_probs=175.0
Q ss_pred EcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCC--EEEEEecCCeEEEEEccCCCcceEEEeeccC
Q 002753 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQ--ILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (884)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~--~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~ 300 (884)
.-+|+++++++.|.+|+++|..+.... ..|.+.++ +.|.+... .|.+|+.||.|.+|++.. ..++..++.
T Consensus 50 AVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~--- 125 (362)
T KOG0294|consen 50 AVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKA--- 125 (362)
T ss_pred EecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEeeeecc---
Confidence 367999999999999999998875443 56777776 99998775 889999999999999988 688889998
Q ss_pred CCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCcccee-ecc-eeEEE
Q 002753 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT-SMMQW 378 (884)
Q Consensus 301 ~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~-sg~-~i~~W 378 (884)
|++.|+.++..|.|++-.+-+.|+.+++|++-.|+.-..++-. ...+.+.|+|.| +.++ .+. .+-+|
T Consensus 126 -----H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~G----d~F~v~~~~~i~i~ 194 (362)
T KOG0294|consen 126 -----HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQG----DHFVVSGRNKIDIY 194 (362)
T ss_pred -----cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCC----CEEEEEeccEEEEE
Confidence 9999999999999999999999999999999777654433321 223458888888 5433 333 78888
Q ss_pred ecCCceEEEEecCCcceEEEEee--cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceE
Q 002753 379 DEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (884)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~ 456 (884)
..+..+++..... +.++.+..| +..+++|..+..+++||-.... ++..+.+|...|.
T Consensus 195 q~d~A~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~--------------------~~~~~~AH~~RVK 253 (362)
T KOG0294|consen 195 QLDNASVFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDT--------------------PLTEFLAHENRVK 253 (362)
T ss_pred ecccHhHhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCc--------------------cceeeecchhhee
Confidence 8888777665543 345666666 6788889999988888743311 3678899999999
Q ss_pred EEEE--ccCCCEEEEEeCCceE-EEEccCC
Q 002753 457 HVAA--SKDGMFLAVAGLHGLI-LYDIRQK 483 (884)
Q Consensus 457 ~va~--S~dG~~lavag~dg~i-iwd~~s~ 483 (884)
.+++ .|++.+|+++|.||.| +||+...
T Consensus 254 ~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 254 DIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9984 5789999999999999 9999754
No 83
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.9e-16 Score=168.67 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=171.3
Q ss_pred cceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEee-cCCeEE
Q 002753 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHML 146 (884)
Q Consensus 68 G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~ll 146 (884)
.+++++++|.+++.||++-++|+|.+|++..+-.... .+. .+.+.++.+++. .+.+|+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~----------------vi~-----g~~drsIE~L~W~e~~RLF 84 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP----------------VIH-----GPEDRSIESLAWAEGGRLF 84 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE----------------EEe-----cCCCCceeeEEEccCCeEE
Confidence 3568999999999999999999999999974321100 010 112233434433 477888
Q ss_pred EEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEE
Q 002753 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (884)
Q Consensus 147 v~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (884)
....+|.|.. ||-...... .......+.|.+|+-++
T Consensus 85 S~g~sg~i~E--wDl~~lk~~----------------------------------~~~d~~gg~IWsiai~p-------- 120 (691)
T KOG2048|consen 85 SSGLSGSITE--WDLHTLKQK----------------------------------YNIDSNGGAIWSIAINP-------- 120 (691)
T ss_pred eecCCceEEE--EecccCcee----------------------------------EEecCCCcceeEEEeCC--------
Confidence 8888999876 554332211 11123345677777544
Q ss_pred EcCCcEEEEeecCCccceeeecccc----cc--cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccC
Q 002753 227 YSNGQLMSCSVSKKGLKLAEFIKID----KE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (884)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~----~~--~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~ 300 (884)
.+..++++++||.+...+..... .. .......+++|+|++..||+|+.||.|++||+.. +..+......-.
T Consensus 121 --~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d 197 (691)
T KOG2048|consen 121 --ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS-GQTLHIITMQLD 197 (691)
T ss_pred --ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC-CceEEEeeeccc
Confidence 44444444444432222211110 11 1223455699999999999999999999999988 544442221111
Q ss_pred CCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEE
Q 002753 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ 377 (884)
Q Consensus 301 ~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~ 377 (884)
+.+....--|+++.|-.|+ .||+|..-|+|++||...+.+..+..-| .+.|.+++..+++ ..+.+++ .+..
T Consensus 198 ~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~----d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 198 RLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNE----DRVFSAGVDPKIIQ 271 (691)
T ss_pred ccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh-hcceeEEEEcCCC----CeEEEccCCCceEE
Confidence 1111133457888888776 5788888899999999999999888877 7789999998886 5555444 4555
Q ss_pred EecCCc-eEEEEe---cCCcceEEEEee-cceeecccCCCCceeee
Q 002753 378 WDEYGY-RLYAIE---EGSSERVLIFSF-GKCCLNRGVSGMTYARQ 418 (884)
Q Consensus 378 W~~~~~-~l~~~~---~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~ 418 (884)
+...+. .-|... ..|...+..+.. ...+.+|+.|.++.+-.
T Consensus 272 ~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 272 YSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICS 317 (691)
T ss_pred EEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEcc
Confidence 544433 213332 234445544444 45777888887765543
No 84
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.78 E-value=8.4e-18 Score=176.90 Aligned_cols=284 Identities=10% Similarity=0.086 Sum_probs=185.6
Q ss_pred eeEEEEcCCccEEEEEecCcEEEEEEEEecCce-eecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEE
Q 002753 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS-IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (884)
Q Consensus 70 ~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~ 148 (884)
+.++++-|.|.++++|+-|.++++||.+.-... .++..- .+...+.......+..++.+++.
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l-----------------~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL-----------------QPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhhcc-----------------CcccccccceeeecCCCCeEEEE
Confidence 457889999999999999999999998643221 111110 01112222222345567888888
Q ss_pred ecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCcccc--ccccCCCccEEEEEEcCCcceEEEE
Q 002753 149 LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVS--DHKFPISSAIIWLELCLPMRLLFVL 226 (884)
Q Consensus 149 ~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (884)
+......+++-++....++ .-+.| .++ ...++|-..+++.+|+|.
T Consensus 233 sg~aqakl~DRdG~~~~e~-----------------~KGDQ---------YI~Dm~nTKGHia~lt~g~whP~------- 279 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEF-----------------SKGDQ---------YIRDMYNTKGHIAELTCGCWHPD------- 279 (641)
T ss_pred ecCcceeEEccCCceeeee-----------------eccch---------hhhhhhccCCceeeeeccccccC-------
Confidence 8777777777665543322 11111 110 112345555666666552
Q ss_pred EcCCcEEEEeecCCccceeeecccccc---------cCC-CCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCc-ceEEE
Q 002753 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---------LGS-GDAVCASIAPEQQILAVGTRRGVVELYDLAESAS-LIRTV 295 (884)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~~---------~~h-~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~-~~~~l 295 (884)
+...+++++.|+++++|+....+.. .+. ..++.++|||+|++||.|+.||.|.+|+...... .....
T Consensus 280 --~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v 357 (641)
T KOG0772|consen 280 --NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV 357 (641)
T ss_pred --cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe
Confidence 2345777888999999998765432 111 1234499999999999999999999999754221 11222
Q ss_pred eeccCCCCCCCCc--CeEEEEECCCCCEEEEEEcCCcEEEEeccCC-eeEEEeccc-cccceeeeeecCCCCCCccceee
Q 002753 296 SLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMS 371 (884)
Q Consensus 296 ~~~~~~~~~~h~~--~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~-~l~~tl~~~-~~~~v~s~~~s~~~~~~~~~l~s 371 (884)
+. +|.+ .|+||+||+||++|++-+.|+++++||+... +++.+..+- ..-.-+.+.|||+. +.+++
T Consensus 358 k~-------AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~----kli~T 426 (641)
T KOG0772|consen 358 KD-------AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD----KLILT 426 (641)
T ss_pred ee-------ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc----eEEEe
Confidence 22 2776 8999999999999999999999999999643 334333331 12245678899998 88887
Q ss_pred cc---------eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCcee
Q 002753 372 GT---------SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYA 416 (884)
Q Consensus 372 g~---------~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~ 416 (884)
|. +..+++..+.+....+.-....|+...+ -..+..|+.||++++
T Consensus 427 GtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 427 GTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred cccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 75 5677888888777766555566655555 456677777887765
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.4e-17 Score=175.03 Aligned_cols=285 Identities=14% Similarity=0.139 Sum_probs=210.4
Q ss_pred ceeeecccccc-cCCCCcEEEEEcCCCCE-EEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCC
Q 002753 243 KLAEFIKIDKE-LGSGDAVCASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS 320 (884)
Q Consensus 243 ~~w~~~~~~~~-~~h~~~v~va~sp~~~~-la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~ 320 (884)
+-|...+.... ..|.....++|||...+ +|+.+ .-.|.||+..+ .+..+++.. ....|.++.|-.||+
T Consensus 12 ~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~-~~~~k~~sr--------Fk~~v~s~~fR~DG~ 81 (487)
T KOG0310|consen 12 RYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVT-RSVRKTFSR--------FKDVVYSVDFRSDGR 81 (487)
T ss_pred hhhhhhcccccccccCcceeEecCCCCCCceEEec-ccEEEEEecch-hhhhhhHHh--------hccceeEEEeecCCe
Confidence 34554433222 33443444999996432 34333 35789999876 555555554 566799999999999
Q ss_pred EEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEE
Q 002753 321 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL 397 (884)
Q Consensus 321 ~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~ 397 (884)
+||+|.+.|.|+|+|..+...+..+.+| +.++....|+|.+ ...+.+|+ .++.|+..+......+.+|++.|.
T Consensus 82 LlaaGD~sG~V~vfD~k~r~iLR~~~ah-~apv~~~~f~~~d---~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 82 LLAAGDESGHVKVFDMKSRVILRQLYAH-QAPVHVTKFSPQD---NTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred EEEccCCcCcEEEeccccHHHHHHHhhc-cCceeEEEecccC---CeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence 9999999999999997776677788887 8899999999987 24455665 889999998887667889999996
Q ss_pred EEee----cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCC
Q 002753 398 IFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (884)
Q Consensus 398 ~~~~----~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~d 473 (884)
+.++ ...++|||+|+++++||....... ..-.+|.-||.++.+=|.|..+|+||.+
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~--------------------v~elnhg~pVe~vl~lpsgs~iasAgGn 217 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTSR--------------------VVELNHGCPVESVLALPSGSLIASAGGN 217 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccCCce--------------------eEEecCCCceeeEEEcCCCCEEEEcCCC
Confidence 6665 347899999999999998776542 2345788999999999999999999988
Q ss_pred ceEEEEccCCcEEEecCccceeeeEEEEEEEe--CCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEEecCCccEEEEc
Q 002753 474 GLILYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDV 551 (884)
Q Consensus 474 g~iiwd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~lv~~~~~~~~~~~elr~y~~~~l~~~~~l~~~~~~~~~~~~~~ 551 (884)
..-+||+.+|.-.+.....|.+ +|+++... +.-|+++ +-+..+++|+. ++..+.+...+|+|++.+.+
T Consensus 218 ~vkVWDl~~G~qll~~~~~H~K--tVTcL~l~s~~~rLlS~-----sLD~~VKVfd~---t~~Kvv~s~~~~~pvLsiav 287 (487)
T KOG0310|consen 218 SVKVWDLTTGGQLLTSMFNHNK--TVTCLRLASDSTRLLSG-----SLDRHVKVFDT---TNYKVVHSWKYPGPVLSIAV 287 (487)
T ss_pred eEEEEEecCCceehhhhhcccc--eEEEEEeecCCceEeec-----ccccceEEEEc---cceEEEEeeecccceeeEEe
Confidence 8769999988744332222333 35555544 5778877 44577899964 46689999999999998886
Q ss_pred cC--CEEEEEEcCCeEEEEEEE
Q 002753 552 YE--DYILVTYRPFDVHIFHVK 571 (884)
Q Consensus 552 ~~--~~llv~~~~~~i~i~~~~ 571 (884)
.. +.++++..||-+.+-+.+
T Consensus 288 s~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 288 SPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cCCCceEEEecccceeeeehhh
Confidence 54 567777777766665444
No 86
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.8e-17 Score=181.97 Aligned_cols=208 Identities=20% Similarity=0.281 Sum_probs=152.8
Q ss_pred hccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeE
Q 002753 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (884)
Q Consensus 66 ~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l 145 (884)
+.+..+.++|-|||.+|.++.+||.+++|+....... ++ . +......+.++++...++
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-------P~-------------t--i~~~g~~v~~ia~~s~~f 69 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-------PE-------------T--IDISGELVSSIACYSNHF 69 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-------Cc-------------h--hhccCceeEEEeecccce
Confidence 4566789999999999999999999999987533110 00 0 111334578899999999
Q ss_pred EEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEE
Q 002753 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (884)
Q Consensus 146 lv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (884)
++++.++.+.++..+....... + ..-..+++. ++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~i-----------L-------------------------~Rftlp~r~----------~~ 103 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDTI-----------L-------------------------ARFTLPIRD----------LA 103 (933)
T ss_pred EEeeccceEEEeeCCCCCccce-----------e-------------------------eeeeccceE----------EE
Confidence 9999999999987754322111 0 000112333 44
Q ss_pred EEcCCcEEEEeecCCccceeeeccccc---ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCC
Q 002753 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (884)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~~---~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~ 301 (884)
++.+|+.++.+++|..+++.+..+... +.+|...+. +.++|++.+||+.+-||+|++|++++ +.+..++.+....
T Consensus 104 v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~ 182 (933)
T KOG1274|consen 104 VSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVDKD 182 (933)
T ss_pred EecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCCcc
Confidence 688999999999999999877665432 378998887 99999999999999999999999998 7777666654322
Q ss_pred CCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeE
Q 002753 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM 342 (884)
Q Consensus 302 ~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~ 342 (884)
........+..++|+|+|..||+...|+.|++++..+....
T Consensus 183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 22223556788999999888888888899999998876543
No 87
>PTZ00421 coronin; Provisional
Probab=99.78 E-value=6.1e-17 Score=183.86 Aligned_cols=197 Identities=13% Similarity=0.184 Sum_probs=149.8
Q ss_pred ccCCCccEEEEEEcCCcceEEEEEc-CCcEEEEeecCCccceeeecccc----------cccCCCCcEE-EEEcCCC-CE
Q 002753 204 KFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAVC-ASIAPEQ-QI 270 (884)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~d~~i~~w~~~~~~----------~~~~h~~~v~-va~sp~~-~~ 270 (884)
+.+|...|.+++| +| |++++++++.|+++++|+..... .+.+|...+. ++|+|++ .+
T Consensus 71 l~GH~~~V~~v~f----------sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~i 140 (493)
T PTZ00421 71 LLGQEGPIIDVAF----------NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140 (493)
T ss_pred EeCCCCCEEEEEE----------cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCE
Confidence 3567778888886 55 78889999999999999976431 2367888887 9999985 69
Q ss_pred EEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccc
Q 002753 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 350 (884)
Q Consensus 271 la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~ 350 (884)
||+|+.|++|+|||+.+ ++.+..+.. |.+.|.+++|+|||..||+|+.|++|++||+..+....++.+|..
T Consensus 141 LaSgs~DgtVrIWDl~t-g~~~~~l~~--------h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~ 211 (493)
T PTZ00421 141 LASAGADMVVNVWDVER-GKAVEVIKC--------HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS 211 (493)
T ss_pred EEEEeCCCEEEEEECCC-CeEEEEEcC--------CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC
Confidence 99999999999999988 677777777 999999999999999999999999999999999988888888743
Q ss_pred cceeeeeecCCCCCCccceee-c------ceeEEEecCCce-EEEEecCCc-ceE--EEEee-cceeeccc-CCCCceee
Q 002753 351 SSISSPIVKPNQDCKYEPLMS-G------TSMMQWDEYGYR-LYAIEEGSS-ERV--LIFSF-GKCCLNRG-VSGMTYAR 417 (884)
Q Consensus 351 ~~v~s~~~s~~~~~~~~~l~s-g------~~i~~W~~~~~~-l~~~~~~~~-~~v--~~~~~-~~~~~s~~-~d~~~~~w 417 (884)
.....+.|.+++ ..+++ | ..+.+||..... .+.....+. ..+ ..++. ++.+++++ .|+.+++|
T Consensus 212 ~~~~~~~w~~~~----~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriw 287 (493)
T PTZ00421 212 AKSQRCLWAKRK----DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCF 287 (493)
T ss_pred CcceEEEEcCCC----CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence 344556777765 44443 2 269999997643 333332222 222 23444 56666666 59999999
Q ss_pred eeeecC
Q 002753 418 QVIYGE 423 (884)
Q Consensus 418 ~l~~~~ 423 (884)
++..+.
T Consensus 288 dl~~~~ 293 (493)
T PTZ00421 288 ELMNER 293 (493)
T ss_pred EeeCCc
Confidence 987654
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.78 E-value=2.9e-17 Score=188.24 Aligned_cols=260 Identities=15% Similarity=0.228 Sum_probs=185.1
Q ss_pred EEEEcCCcEEEEee--cCCccceeeecccc------------cc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEc
Q 002753 224 FVLYSNGQLMSCSV--SKKGLKLAEFIKID------------KE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDL 285 (884)
Q Consensus 224 ~~~s~dG~~~~~~~--~d~~i~~w~~~~~~------------~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~ 285 (884)
+-++|||..++++. .|+.+.+|+....- .+ ..|...+. +.|+|||++||+|++|+.|.+|+.
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 44789999999988 67777788754211 11 45777775 899999999999999999999998
Q ss_pred cCC------C-----------cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccc
Q 002753 286 AES------A-----------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI 348 (884)
Q Consensus 286 ~~~------~-----------~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~ 348 (884)
... + +....+.+ |.+.|..++|+||+.+||+++-|++|.+|+..+..+...+++|
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~--------H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRG--------HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEec--------CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 730 0 13344555 9999999999999999999999999999999999999999999
Q ss_pred cccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcc------eEEEEee---cceeecccCCCCcee
Q 002753 349 SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE------RVLIFSF---GKCCLNRGVSGMTYA 416 (884)
Q Consensus 349 ~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~------~v~~~~~---~~~~~s~~~d~~~~~ 416 (884)
.+-|..+.|+|.| .++++-+ ++++|......+.....++-+ .+..+++ |+.+++...
T Consensus 171 -~s~VKGvs~DP~G----ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA------ 239 (942)
T KOG0973|consen 171 -QSLVKGVSWDPIG----KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA------ 239 (942)
T ss_pred -cccccceEECCcc----CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh------
Confidence 7889999999999 8888776 999999877777666654332 2334333 666655432
Q ss_pred eeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccC------C-----------CEEEEEeCCceE-EE
Q 002753 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD------G-----------MFLAVAGLHGLI-LY 478 (884)
Q Consensus 417 w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~d------G-----------~~lavag~dg~i-iw 478 (884)
+..+...+-+..- -.| +.-..+.||..|+.+++|+|. + ..+|+||+|+.+ +|
T Consensus 240 --~n~~~~~~~IieR-----~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW 309 (942)
T KOG0973|consen 240 --VNGGKSTIAIIER-----GTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW 309 (942)
T ss_pred --ccCCcceeEEEec-----CCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence 1111111111110 012 123367899999999999973 1 168999999999 99
Q ss_pred EccCCcEEEecCccceeeeEEEEEEEe--CCEEEEEEE
Q 002753 479 DIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNY 514 (884)
Q Consensus 479 d~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~lv~~~~ 514 (884)
+...-| .+| ...+--+-.|.+|+|. |-.|.+|.+
T Consensus 310 ~T~~~R-Pl~-vi~~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 310 NTALPR-PLF-VIHNLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred ecCCCC-chh-hhhhhhcCceeeeeEcCCCCeEEEEec
Confidence 986554 222 1111112347899998 445666644
No 89
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.78 E-value=3.7e-17 Score=187.39 Aligned_cols=304 Identities=16% Similarity=0.153 Sum_probs=207.4
Q ss_pred cceeEEEEcCCccEEEEEe--cCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEE--eecCC
Q 002753 68 GENLQAVWSPDTKLIAVVT--SSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNK 143 (884)
Q Consensus 68 G~~~~v~wsPDg~~Lav~t--~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i--~~~~~ 143 (884)
..+.++..+|||..+|+++ .||.+++|+.+.-.......... + ....-....+.++|.|+ ++|+.
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~-----l------~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN-----L------PKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcc-----c------chhheeeccccCceeEEEECCCCC
Confidence 3467999999999999999 88899999885321110000000 0 01111124567778886 77889
Q ss_pred eEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceE
Q 002753 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (884)
Q Consensus 144 ~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (884)
++++|++|..+.+|.... ..... +
T Consensus 83 ~lAsGSDD~~v~iW~~~~--~~~~~------------------------------------------~------------ 106 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAE--IGSGT------------------------------------------V------------ 106 (942)
T ss_pred eEeeccCcceEEEeeecc--cCCcc------------------------------------------c------------
Confidence 999999998887743321 11000 0
Q ss_pred EEEEcCCcEEEEeecCCccceeeecccccccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCC
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~ 302 (884)
+.+.|. ...+.-|.... .+.+|..-+. ++|+|++.++|+++.|++|.+||..+ .+.+.++.+
T Consensus 107 --fgs~g~-------~~~vE~wk~~~--~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~vl~~----- 169 (942)
T KOG0973|consen 107 --FGSTGG-------AKNVESWKVVS--ILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-FELLKVLRG----- 169 (942)
T ss_pred --cccccc-------ccccceeeEEE--EEecCCCccceeccCCCccEEEEecccceEEEEcccc-ceeeeeeec-----
Confidence 000010 01112233221 1256776666 99999999999999999999999998 688889999
Q ss_pred CCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecccc-----ccceeeeeecCCCCCCccceeecc----
Q 002753 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-----LSSISSPIVKPNQDCKYEPLMSGT---- 373 (884)
Q Consensus 303 ~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~-----~~~v~s~~~s~~~~~~~~~l~sg~---- 373 (884)
|.+.|..+.|.|-|++||+-++|++++||.+..-.+.+++.++- ..-+.-+.|||+| +.+++..
T Consensus 170 ---H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG----~~las~nA~n~ 242 (942)
T KOG0973|consen 170 ---HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG----HHLASPNAVNG 242 (942)
T ss_pred ---ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc----CeecchhhccC
Confidence 99999999999999999999999999999987766666665431 2245667899999 7777553
Q ss_pred ---eeEEEecCCceEEEEecCCcceE--EEEee------cc------------eeecccCCCCceeeeeeecCCeEEEEe
Q 002753 374 ---SMMQWDEYGYRLYAIEEGSSERV--LIFSF------GK------------CCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (884)
Q Consensus 374 ---~i~~W~~~~~~l~~~~~~~~~~v--~~~~~------~~------------~~~s~~~d~~~~~w~l~~~~~~~~i~~ 430 (884)
++.+-.-++.+.-..+-||...+ +.|.+ .+ .+++|+.|+++.+|.... .|
T Consensus 243 ~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~--~R----- 315 (942)
T KOG0973|consen 243 GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL--PR----- 315 (942)
T ss_pred CcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC--CC-----
Confidence 55555556656555666888776 44443 12 456778888888887421 11
Q ss_pred cCCCCceeEEEeecccc--cccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002753 431 SEDTDELKILHLNLPVS--YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (884)
Q Consensus 431 ~~~~~~~~w~~~~~p~~--~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~ 483 (884)
|-- ..-.+.+|..++|||||..|.+++.||.+ +...+.+
T Consensus 316 --------------Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 --------------PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred --------------chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 211 11234679999999999999999999999 8877643
No 90
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.3e-16 Score=158.13 Aligned_cols=274 Identities=15% Similarity=0.166 Sum_probs=195.3
Q ss_pred ccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeec--CCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCe
Q 002753 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQI--GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (884)
Q Consensus 67 ~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 144 (884)
.+.+.++.|+++|..+++++.|..+++|+...+...... +.++. .+.++......
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~-----------------------~~~~Fth~~~~ 70 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGV-----------------------DLACFTHHSNT 70 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccc-----------------------cEEEEecCCce
Confidence 577889999999999999999999999999755432111 11110 13345555555
Q ss_pred EEEEec--CCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcce
Q 002753 145 MLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (884)
Q Consensus 145 llv~~~--~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (884)
++.++. |.+|+.++..+..-. ..+.+|+..|++++
T Consensus 71 ~i~sStk~d~tIryLsl~dNkyl------------------------------------RYF~GH~~~V~sL~------- 107 (311)
T KOG1446|consen 71 VIHSSTKEDDTIRYLSLHDNKYL------------------------------------RYFPGHKKRVNSLS------- 107 (311)
T ss_pred EEEccCCCCCceEEEEeecCceE------------------------------------EEcCCCCceEEEEE-------
Confidence 555544 567777765543311 12457778888877
Q ss_pred EEEEEcCCcEEEEeecCCccceeeecccccc--cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCC-cceEEEeecc
Q 002753 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYD 299 (884)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~-~~~~~l~~~~ 299 (884)
.+|-+..+++++.|+++++||....++. ......-.+||.|+|-++|+|...+.|++||++..+ ++..++....
T Consensus 108 ---~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~ 184 (311)
T KOG1446|consen 108 ---VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD 184 (311)
T ss_pred ---ecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC
Confidence 5777889999999999999999866553 112233348999999999999988899999998743 4444444321
Q ss_pred CCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccc-e-eeeeecCCCCCCccceeecc---e
Q 002753 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS-I-SSPIVKPNQDCKYEPLMSGT---S 374 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~-v-~s~~~s~~~~~~~~~l~sg~---~ 374 (884)
+.....+.+.|||||+.+..+...+.+.+.|.+.|...+++.++..+. + -+..|+|++ +.+++|. +
T Consensus 185 -----~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds----~Fvl~gs~dg~ 255 (311)
T KOG1446|consen 185 -----NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS----KFVLSGSDDGT 255 (311)
T ss_pred -----CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC----cEEEEecCCCc
Confidence 245678999999999999999999999999999999999998762221 1 355688999 8888886 8
Q ss_pred eEEEecCCceEEEEecC-CcceEEEEee-cceeecccCCCCceeee
Q 002753 375 MMQWDEYGYRLYAIEEG-SSERVLIFSF-GKCCLNRGVSGMTYARQ 418 (884)
Q Consensus 375 i~~W~~~~~~l~~~~~~-~~~~v~~~~~-~~~~~s~~~d~~~~~w~ 418 (884)
+.+|+.++++.+..+.+ +...+.++.| .+...-.+.+..+..|.
T Consensus 256 i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~ 301 (311)
T KOG1446|consen 256 IHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWL 301 (311)
T ss_pred EEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEe
Confidence 99999999999888877 4555555445 33333334445555554
No 91
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.6e-17 Score=186.01 Aligned_cols=246 Identities=15% Similarity=0.178 Sum_probs=167.3
Q ss_pred CCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCC---------------------------cc--e--E---------
Q 002753 255 GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA---------------------------SL--I--R--------- 293 (884)
Q Consensus 255 ~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~---------------------------~~--~--~--------- 293 (884)
.|.++++ +.||+||++||+|++||.||||.+.... .. + +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999998 9999999999999999999999986500 00 0 0
Q ss_pred ----EEeeccCC-------CCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 002753 294 ----TVSLYDWG-------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 294 ----~l~~~~~~-------~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
.+..+.+. .-.+|++.|.+++||.++ +|.+++.|++||+|++....+++.+.. .+-|++++|+|.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~H--ndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSH--NDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEec--CCeeEEEEecccC
Confidence 00000000 012899999999999875 688999999999999999999999863 6789999999987
Q ss_pred CCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEe
Q 002753 363 DCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (884)
Q Consensus 363 ~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~ 442 (884)
+ + ++++||.|+.+++|.+....- . .|
T Consensus 422 D---r------------------------------------yFiSGSLD~KvRiWsI~d~~V--v----------~W--- 447 (712)
T KOG0283|consen 422 D---R------------------------------------YFISGSLDGKVRLWSISDKKV--V----------DW--- 447 (712)
T ss_pred C---C------------------------------------cEeecccccceEEeecCcCee--E----------ee---
Confidence 1 2 335666666777776543221 0 11
Q ss_pred ecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEec-----CccceeeeEEEEEEEe---CCEEEEEE
Q 002753 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG-----DITQEQKIQSKGLLWL---GKIIVVCN 513 (884)
Q Consensus 443 ~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~-----~~~~e~~~~v~~~~W~---~~~lv~~~ 513 (884)
..-..-|++++|+|||++.++|+-+|.. +|++...+..+-. +-...+.-.|+|++.. .+-++|.
T Consensus 448 ------~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT- 520 (712)
T KOG0283|consen 448 ------NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT- 520 (712)
T ss_pred ------hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe-
Confidence 0111458999999999999999999999 9999876543210 1111111258898886 2324443
Q ss_pred EecCCCeEEEEEeeCCCCCCcceEEEEe----cCCcc-EEEEccCCEEEEEEcCCeEEEEEEE
Q 002753 514 YIDSSNTYELLFYPRYHLDQSSLLCRKS----LLAKP-IVMDVYEDYILVTYRPFDVHIFHVK 571 (884)
Q Consensus 514 ~~~~~~~~elr~y~~~~l~~~~~l~~~~----~~~~~-~~~~~~~~~llv~~~~~~i~i~~~~ 571 (884)
+.+..||+|+.. ...+++.+. ..++. -.++..+.+|+.++.|..++||++.
T Consensus 521 ----SnDSrIRI~d~~---~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 521 ----SNDSRIRIYDGR---DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ----cCCCceEEEecc---chhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 456789999862 111222111 12222 2344577899999999999999875
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.77 E-value=7e-17 Score=166.94 Aligned_cols=229 Identities=13% Similarity=0.143 Sum_probs=189.9
Q ss_pred cCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCC
Q 002753 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (884)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~ 303 (884)
+.....+++..|.+.-+.|....+.+ .||...++ +.++|+...+++++.|..|+||.+.. .........
T Consensus 229 ~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~~~~~------ 301 (506)
T KOG0289|consen 229 PSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPTSSRP------ 301 (506)
T ss_pred CCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcccccc------
Confidence 33466778888877777777665543 79999998 99999999999999999999999987 444444455
Q ss_pred CCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccc-cccceeeeeecCCCCCCccceeecc---eeEEEe
Q 002753 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (884)
Q Consensus 304 ~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~-~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~ 379 (884)
|.++|+.+...|.|.+|.+++.||+|.+-|+..+.++...... ..-.+++.+|+||| ..+.+|. .+++|+
T Consensus 302 --h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----Lifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 302 --HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----LIFGTGTPDGVVKIWD 375 (506)
T ss_pred --ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc----eEEeccCCCceEEEEE
Confidence 9999999999999999999999999999999999887766542 12358899999999 7777776 899999
Q ss_pred cCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceE
Q 002753 380 EYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (884)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~ 456 (884)
.....-...+.+|.+.|..++| |-.+++++.|+.+++||+....+- +.-......++.
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~-------------------kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF-------------------KTIQLDEKKEVN 436 (506)
T ss_pred cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc-------------------ceeeccccccce
Confidence 9988888888999999988888 778999999999999999876541 221222334799
Q ss_pred EEEEccCCCEEEEEeCCceE-EEEccCCcEEEe
Q 002753 457 HVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (884)
Q Consensus 457 ~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f 488 (884)
++.|++.|++|+++|.|-.+ +++-.++.|...
T Consensus 437 s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred eEEEcCCCCeEEeecceeEEEEEecccccceee
Confidence 99999999999999999999 999899999764
No 93
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=6.1e-15 Score=160.92 Aligned_cols=492 Identities=13% Similarity=0.131 Sum_probs=269.1
Q ss_pred eEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCcc---EEEEEecCcEEEEEEEEecCceeecCCC
Q 002753 32 GLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK---LIAVVTSSLYLHIFKVQITEKSIQIGGK 108 (884)
Q Consensus 32 ~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~---~Lav~t~~g~l~l~~l~~~~~~~~~~~~ 108 (884)
.++|.++...|.+|+-.++ .......+ +.+.+.++.|-|+++ .+++|..||.|++|.+..... ..
T Consensus 26 ~~vafGa~~~Iav~dp~k~-~i~t~l~G------H~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~-~~---- 93 (764)
T KOG1063|consen 26 GLVAFGAGPAIAVADPEKI-LIVTTLDG------HVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL-IK---- 93 (764)
T ss_pred ceEEecCCceEEEeCcccc-eeEEeccC------CccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe-EE----
Confidence 3677778888999998644 22222221 346788999999998 899999999999999982211 00
Q ss_pred CCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccc---cceeeeccCCCCccceeecc-
Q 002753 109 QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFY---GAFELVHSSNDSSVAALSHH- 184 (884)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~---~~~~l~~~~~~~~~i~~~~~- 184 (884)
+ ..+.++...+.|+.-....+.+...++.+..|+-+++.. ...++.....-..|+..++.
T Consensus 94 ------i----------~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~ 157 (764)
T KOG1063|consen 94 ------I----------YTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNN 157 (764)
T ss_pred ------E----------EeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccC
Confidence 0 001222223334433333333335777777644322210 01111111111112222220
Q ss_pred -----cCCCC-----cceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccc---
Q 002753 185 -----FPSNG-----LASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--- 251 (884)
Q Consensus 185 -----~~~~~-----l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~--- 251 (884)
..++. +.+.....-.....+.+|..-|.+++|..... |.-++++++.|..+++|...-..
T Consensus 158 ~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~-------~~~~laS~SQD~yIRiW~i~~~~~~~ 230 (764)
T KOG1063|consen 158 KTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG-------DDLLLASSSQDRYIRIWRIVLGDDED 230 (764)
T ss_pred CcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC-------CcEEEEecCCceEEEEEEEEecCCcc
Confidence 00000 00111000111233445666666666644332 34467777888888888654211
Q ss_pred ---------------------c----------ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcc-eEEEeec
Q 002753 252 ---------------------K----------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASL-IRTVSLY 298 (884)
Q Consensus 252 ---------------------~----------~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~-~~~l~~~ 298 (884)
. +.||++.|. +.|+|.+..|.+++.|.++.+|.-++..+. +-..+.-
T Consensus 231 ~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlG 310 (764)
T KOG1063|consen 231 SNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLG 310 (764)
T ss_pred ccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEee
Confidence 0 138999999 999999988999999999999998763222 2222221
Q ss_pred cCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee---EEEeccccccceeeeeecCCCCCCccceeecc--
Q 002753 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (884)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l---~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~-- 373 (884)
..+ +..+.-..+-|+|++..+++-+.-|++++|-...... .-.+.|| ...|..++++|.| +++++.+
T Consensus 311 e~g---g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH-~~~V~dv~W~psG----eflLsvs~D 382 (764)
T KOG1063|consen 311 EVG---GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH-VDGVKDVDWDPSG----EFLLSVSLD 382 (764)
T ss_pred ccc---ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc-cccceeeeecCCC----CEEEEeccc
Confidence 111 2456688999999999999999999999998443322 1223455 7899999999999 8888776
Q ss_pred -eeEEEecCCce-EEEE----------------e-------cCCcceE-EEEeeccee------ecc-c-------CCC-
Q 002753 374 -SMMQWDEYGYR-LYAI----------------E-------EGSSERV-LIFSFGKCC------LNR-G-------VSG- 412 (884)
Q Consensus 374 -~i~~W~~~~~~-l~~~----------------~-------~~~~~~v-~~~~~~~~~------~s~-~-------~d~- 412 (884)
+.+++...+.+ -|.- . .+.+++| ..|++.+.+ +.+ + +++
T Consensus 383 QTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA 462 (764)
T KOG1063|consen 383 QTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGA 462 (764)
T ss_pred cceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccc
Confidence 55555443211 1111 1 1112222 222221110 000 0 000
Q ss_pred --------------------Cc----------------------------eeeee---eecC-CeEEEEecCCC------
Q 002753 413 --------------------MT----------------------------YARQV---IYGE-DRLLVVQSEDT------ 434 (884)
Q Consensus 413 --------------------~~----------------------------~~w~l---~~~~-~~~~i~~~~~~------ 434 (884)
.. .+|.= ++|. -.++....+..
T Consensus 463 ~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliAS 542 (764)
T KOG1063|consen 463 NVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIAS 542 (764)
T ss_pred ccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEee
Confidence 00 00000 0010 11111111110
Q ss_pred ------C----ceeEEE--eecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEE--ecCccceeeeEE
Q 002753 435 ------D----ELKILH--LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV--FGDITQEQKIQS 499 (884)
Q Consensus 435 ------~----~~~w~~--~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~--f~~~~~e~~~~v 499 (884)
. .+.|.+ .+....+.+|.-.|+.++|||||++|+++|+|.++ +|+...+.-.. |....+ +...|
T Consensus 543 aCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~-HtRII 621 (764)
T KOG1063|consen 543 ACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKA-HTRII 621 (764)
T ss_pred hhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccc-cceEE
Confidence 0 134532 22334678999999999999999999999999999 99986543222 222211 22235
Q ss_pred EEEEEeC--CEEEEEEEecCCCeEEEEEeeCCCCCCcceE--EEEecCCccEEEEc-------cCCEEEEEEcCCeEEEE
Q 002753 500 KGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQSSLL--CRKSLLAKPIVMDV-------YEDYILVTYRPFDVHIF 568 (884)
Q Consensus 500 ~~~~W~~--~~lv~~~~~~~~~~~elr~y~~~~l~~~~~l--~~~~~~~~~~~~~~-------~~~~llv~~~~~~i~i~ 568 (884)
.+..|.+ .+.++| +++-.+.+|.-++.....+. ...++..++..++. ..+.+.|+...|+|.+|
T Consensus 622 WdcsW~pde~~FaTa-----SRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~ 696 (764)
T KOG1063|consen 622 WDCSWSPDEKYFATA-----SRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLW 696 (764)
T ss_pred EEcccCcccceeEEe-----cCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEE
Confidence 5888865 456666 45578899987522111111 12233333333332 12346778889999999
Q ss_pred EEEE
Q 002753 569 HVKL 572 (884)
Q Consensus 569 ~~~~ 572 (884)
+...
T Consensus 697 ~~~~ 700 (764)
T KOG1063|consen 697 RRKR 700 (764)
T ss_pred eccc
Confidence 8763
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.76 E-value=6.2e-17 Score=183.94 Aligned_cols=262 Identities=16% Similarity=0.201 Sum_probs=206.6
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEE-EeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 002753 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (884)
Q Consensus 260 v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~-l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~ 338 (884)
+|..+. ...+++|+.|+++++|+..+ +..+.. +.+ |.+.|.++++..-+..|++|+.|.++++||..+
T Consensus 212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~-~~~i~~~l~G--------H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 212 LCLQLH--DGFFKSGSDDSTLHLWDLNN-GYLILTRLVG--------HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred hhheee--cCeEEecCCCceeEEeeccc-ceEEEeeccC--------CCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 345555 66889999999999999988 666665 888 999999999988889999999999999999999
Q ss_pred CeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee-cceeecccCCCCc
Q 002753 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMT 414 (884)
Q Consensus 339 ~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~ 414 (884)
+.+.+++.+| .+.+..+...+ ..+.+|+ ++++|+..++.++.+..+|.+.|.++.. ...+++|+.|+++
T Consensus 281 g~C~~~l~gh-~stv~~~~~~~------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 281 GECTHSLQGH-TSSVRCLTIDP------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTV 353 (537)
T ss_pred CcEEEEecCC-CceEEEEEccC------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceE
Confidence 9999999998 77777766543 3445555 9999999999999999999999988888 8889999999999
Q ss_pred eeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC-cEEEecCcc
Q 002753 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWRVFGDIT 492 (884)
Q Consensus 415 ~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~-~w~~f~~~~ 492 (884)
++|++..+.- ..++.+|...|.++.+.+. .++.+|+-|+++ +||+.++ +.... ..
T Consensus 354 ~VW~~~~~~c--------------------l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t--l~ 410 (537)
T KOG0274|consen 354 KVWDPRTGKC--------------------LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT--LQ 410 (537)
T ss_pred EEEEhhhcee--------------------eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh--hc
Confidence 9999875443 6778899999999988766 899999999999 9999998 33221 11
Q ss_pred ceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEEecC--CccEEEEccCCEEEEEEcCCeEEEEEE
Q 002753 493 QEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL--AKPIVMDVYEDYILVTYRPFDVHIFHV 570 (884)
Q Consensus 493 ~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~~l~~~~~l~~~~~~--~~~~~~~~~~~~llv~~~~~~i~i~~~ 570 (884)
+ +...|.++.-.++.|+.+.+ +..+++|+.. ....+....-+ ..+..+....+.++..+.++.+.+|++
T Consensus 411 ~-h~~~v~~l~~~~~~Lvs~~a-----D~~Ik~WD~~---~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 411 G-HTSLVSSLLLRDNFLVSSSA-----DGTIKLWDAE---EGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDL 481 (537)
T ss_pred C-CcccccccccccceeEeccc-----cccEEEeecc---cCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEec
Confidence 1 21234567777888888733 3489999764 22234443332 334444455577888889999999987
Q ss_pred E
Q 002753 571 K 571 (884)
Q Consensus 571 ~ 571 (884)
.
T Consensus 482 ~ 482 (537)
T KOG0274|consen 482 R 482 (537)
T ss_pred c
Confidence 6
No 95
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.76 E-value=6.2e-18 Score=167.36 Aligned_cols=198 Identities=14% Similarity=0.273 Sum_probs=159.7
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCC-----------C------cceEEEeeccCCCCCCCCcCeEEEEE
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-----------A------SLIRTVSLYDWGYSMDDTGPVSCIAW 315 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~-----------~------~~~~~l~~~~~~~~~~h~~~V~~l~~ 315 (884)
..|..+.. .+|||||.++|+|+.|..|+|.|+... + ..++++-. |..+|+++.|
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD--------H~devn~l~F 180 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD--------HVDEVNDLDF 180 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh--------ccCcccceee
Confidence 45777666 899999999999999999999998620 0 12344444 9999999999
Q ss_pred CCCCCEEEEEEcCCcEEEEeccCCe---eEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEe
Q 002753 316 TPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 389 (884)
Q Consensus 316 spdg~~Lasg~~dg~v~vW~~~~~~---l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~ 389 (884)
.|-...|++|+.|++|+++|..... -+..+.+ ...|.++.|+|.| ++++-|. +.++++.++++++...
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfHPsG----efllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFHPSG----EFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhc--cceeeeEeecCCC----ceEEEecCCCceeEEeccceeEeeec
Confidence 9999999999999999999986432 3334443 4579999999999 8888776 8999999999999876
Q ss_pred c---CCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeeccccc-ccCC-CceEEEEEc
Q 002753 390 E---GSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY-ISQN-WPVQHVAAS 461 (884)
Q Consensus 390 ~---~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~-~~~~-~~I~~va~S 461 (884)
. +|.+.|.++.+ ++..+++|.||.+++||-..+.. ..++ ..|. ..|.++.|+
T Consensus 255 nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--------------------v~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--------------------VRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH--------------------HHHHHhhcCCceeeeEEEc
Confidence 4 46677866655 88999999999999999544332 3333 2454 469999999
Q ss_pred cCCCEEEEEeCCceE-EEEccCCcE
Q 002753 462 KDGMFLAVAGLHGLI-LYDIRQKKW 485 (884)
Q Consensus 462 ~dG~~lavag~dg~i-iwd~~s~~w 485 (884)
.+|+|+.++|.|.++ +|.+.+||-
T Consensus 315 kn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 315 KNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred cCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999 999999984
No 96
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8e-16 Score=145.96 Aligned_cols=300 Identities=11% Similarity=0.086 Sum_probs=202.7
Q ss_pred cceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEE--eecCCeE
Q 002753 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHM 145 (884)
Q Consensus 68 G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~l 145 (884)
..+.+|+|.|.|..-||++...++++-....-.. . -..++.+..+ +++ .. ...+.+.+++.|. +++++.+
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~-~-r~~hea~~~p-p~v--~~---kr~khhkgsiyc~~ws~~geli 104 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALID-L-RHAHEAAKQP-PSV--LC---KRNKHHKGSIYCTAWSPCGELI 104 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccC-c-ccccccccCC-CeE--Ee---eeccccCccEEEEEecCccCeE
Confidence 3457899999999999999999998876531100 0 0122211111 111 11 1125566777665 5566777
Q ss_pred EEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEE
Q 002753 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (884)
Q Consensus 146 lv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (884)
+.|+.|..|..+.++.+...... ...++.-+++.|.+++|-...
T Consensus 105 atgsndk~ik~l~fn~dt~~~~g-------------------------------~dle~nmhdgtirdl~fld~~----- 148 (350)
T KOG0641|consen 105 ATGSNDKTIKVLPFNADTCNATG-------------------------------HDLEFNMHDGTIRDLAFLDDP----- 148 (350)
T ss_pred EecCCCceEEEEecccccccccC-------------------------------cceeeeecCCceeeeEEecCC-----
Confidence 77788889998888766543220 013345577889999874332
Q ss_pred EEcCCcEEEEee-cCCccceeeecccccc---cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCC
Q 002753 226 LYSNGQLMSCSV-SKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (884)
Q Consensus 226 ~s~dG~~~~~~~-~d~~i~~w~~~~~~~~---~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~ 301 (884)
.+.|.+++++. .|-.+.+-|...++.+ .+|+.-+-.-++-++-.+|+|++|.+||.||++- ..++.++...-.
T Consensus 149 -~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~- 225 (350)
T KOG0641|consen 149 -ESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFH- 225 (350)
T ss_pred -CcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeec-cceeeeccCccc-
Confidence 12344444332 2222333344344332 6788777655666889999999999999999987 667766543110
Q ss_pred CCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEE
Q 002753 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW 378 (884)
Q Consensus 302 ~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W 378 (884)
..--....|.+++..|.|++||+|-.|....++|+.|++.++.+..| ...|.++.|+|.. .++++++ ++++-
T Consensus 226 ~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph-sadir~vrfsp~a----~yllt~syd~~iklt 300 (350)
T KOG0641|consen 226 DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH-SADIRCVRFSPGA----HYLLTCSYDMKIKLT 300 (350)
T ss_pred CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC-ccceeEEEeCCCc----eEEEEecccceEEEe
Confidence 00002356999999999999999999999999999999999999888 7889999999997 8888887 67777
Q ss_pred ecCCc---e-EEEEecCCcceEEEEee---cceeecccCCCCceeeee
Q 002753 379 DEYGY---R-LYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQV 419 (884)
Q Consensus 379 ~~~~~---~-l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l 419 (884)
+..+. + ..++..+|.+++.+.++ .-++++.+.|.+..+|.+
T Consensus 301 dlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred ecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 77652 2 23455678888877777 336788899999999975
No 97
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.76 E-value=5.9e-17 Score=157.84 Aligned_cols=279 Identities=11% Similarity=0.113 Sum_probs=203.0
Q ss_pred ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcE
Q 002753 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (884)
Q Consensus 253 ~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v 331 (884)
+.||+.++. +.+|.+|.+|.+++.|.+..||-..+ ++.+-+..+ |+|.|+||...-+.+.+++|+.|.++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~G--------HtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDG--------HTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecC--------CCceEEEEEecCCcceeeecccccee
Confidence 478999998 99999999999999999999998776 788888888 99999999999999999999999999
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec--------ceeEEEecC-------CceEEEEecCCcceE
Q 002753 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--------TSMMQWDEY-------GYRLYAIEEGSSERV 396 (884)
Q Consensus 332 ~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg--------~~i~~W~~~-------~~~l~~~~~~~~~~v 396 (884)
++||+.+|+++.+++- ...|..+.|++++ ..++-. +.+-+++.. +.+.+.....++..+
T Consensus 77 kLWDv~tGk~la~~k~--~~~Vk~~~F~~~g----n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 77 KLWDVETGKQLATWKT--NSPVKRVDFSFGG----NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred EEEEcCCCcEEEEeec--CCeeEEEeeccCC----cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 9999999999998876 3678999999988 433321 255666665 445444444445555
Q ss_pred --EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCC
Q 002753 397 --LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (884)
Q Consensus 397 --~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~d 473 (884)
..+.+ ++.+++|..|+.+..|++.++..- ...-..|+..|+.+.+|+|..++++|++|
T Consensus 151 t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~-------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 151 TSALWGPLGETIIAGHEDGSISIYDARTGKEL-------------------VDSDEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred eeeeecccCCEEEEecCCCcEEEEEcccCcee-------------------eechhhhccccccccccCCcceEEecccC
Confidence 44455 889999999999999999887652 33445677899999999999999999999
Q ss_pred ceE-EEEccCCc-EEEecCccceeeeEEEEEEEeCCEEEEEEEec---------CCCeEEEEEeeC--C-CCCCcceEEE
Q 002753 474 GLI-LYDIRQKK-WRVFGDITQEQKIQSKGLLWLGKIIVVCNYID---------SSNTYELLFYPR--Y-HLDQSSLLCR 539 (884)
Q Consensus 474 g~i-iwd~~s~~-w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~---------~~~~~elr~y~~--~-~l~~~~~l~~ 539 (884)
.+. +||+.+-. -|.|..+. .++...+.-..+.+|.++-.+ +.+.+|-|+|.. + .+.. +.-
T Consensus 212 ttakl~D~~tl~v~Kty~te~---PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr---vkG 285 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYTTER---PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR---VKG 285 (327)
T ss_pred ccceeeeccceeeEEEeeecc---cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc---ccc
Confidence 999 99998754 24443332 223334444455555543211 224467777764 1 1111 112
Q ss_pred EecCCccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002753 540 KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (884)
Q Consensus 540 ~~~~~~~~~~~~~~~~llv~~~~~~i~i~~~~ 571 (884)
+.-|-..+.+.+.+.+..-...||.+++.++.
T Consensus 286 HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 286 HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 22333446666666666666678888887765
No 98
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.76 E-value=4.5e-18 Score=178.29 Aligned_cols=239 Identities=16% Similarity=0.194 Sum_probs=172.5
Q ss_pred EEc-CCcEEEEeecCCccceeeecc-cccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeecc
Q 002753 226 LYS-NGQLMSCSVSKKGLKLAEFIK-IDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (884)
Q Consensus 226 ~s~-dG~~~~~~~~d~~i~~w~~~~-~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~ 299 (884)
+.| .|.++++++.|+.+++|+... ..++ .+|..+|. ++||++|..+.+++.|+.+++||+++ ++++..++.
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET-G~~~~~f~~-- 298 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET-GQVLSRFHL-- 298 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc-ceEEEEEec--
Confidence 355 899999999999999999886 3333 79999999 99999999999999999999999999 888887765
Q ss_pred CCCCCCCCcCeEEEEECCCC-CEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---ee
Q 002753 300 WGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg-~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i 375 (884)
...++|+.|.||+ +.+++|..|+.|+.||+..++.+++...| ...+..+.|-+++ ..+++.+ ++
T Consensus 299 -------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h-Lg~i~~i~F~~~g----~rFissSDdks~ 366 (503)
T KOG0282|consen 299 -------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH-LGAILDITFVDEG----RRFISSSDDKSV 366 (503)
T ss_pred -------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh-hhheeeeEEccCC----ceEeeeccCccE
Confidence 4467999999999 88899999999999999999988887766 8899999999998 7777666 89
Q ss_pred EEEecCCceEEEEe---cCCcceEEEEee-cceeecccCCCCceeeeeee------------------------cCCeEE
Q 002753 376 MQWDEYGYRLYAIE---EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY------------------------GEDRLL 427 (884)
Q Consensus 376 ~~W~~~~~~l~~~~---~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~l~~------------------------~~~~~~ 427 (884)
++|..+..-.+... ..|+-+-+.+.+ ++.++.-+.|+.+.+..... ..+.-+
T Consensus 367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~ 446 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT 446 (503)
T ss_pred EEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCe
Confidence 99987764433221 112222222222 33444334443332222110 000001
Q ss_pred EEecCC-CCce--eEEEeecccccccCCCceEEEEEccC-CCEEEEEeCCceE-EEE
Q 002753 428 VVQSED-TDEL--KILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYD 479 (884)
Q Consensus 428 i~~~~~-~~~~--~w~~~~~p~~~~~~~~~I~~va~S~d-G~~lavag~dg~i-iwd 479 (884)
+..|+. ..-. .|.+.++..++..|+.++..+.|.|- -..+|++|.||.| +|+
T Consensus 447 l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 447 LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 111111 1111 24556667888999999999999998 4589999999999 995
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=8.4e-17 Score=159.63 Aligned_cols=272 Identities=13% Similarity=0.149 Sum_probs=206.2
Q ss_pred ccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCe
Q 002753 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGV 279 (884)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~ 279 (884)
+.+|+..|..++ ......++.+++.|.+..+|....+.++ .||.+.+. +.|++.+.++++|+.|++
T Consensus 144 ~~GHkDGiW~Va----------a~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 144 LEGHKDGIWHVA----------ADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred hcccccceeeeh----------hhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc
Confidence 345666665544 2333446777788999999999999887 78999987 999999999999999999
Q ss_pred EEEEEcc------CCC---------------cceEEEeec------c--CC--CCCCCCcCeEEEEECCCCCEEEEEEcC
Q 002753 280 VELYDLA------ESA---------------SLIRTVSLY------D--WG--YSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (884)
Q Consensus 280 v~lw~~~------~~~---------------~~~~~l~~~------~--~~--~~~~h~~~V~~l~~spdg~~Lasg~~d 328 (884)
-.||... ... +..+...+. . .| .-.+|.+.|.++.|-..|+.+++++.|
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 9999731 100 000000000 0 00 012599999999999999999999999
Q ss_pred CcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCC-ceEEEEecCCcceEEEEee--c
Q 002753 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF--G 402 (884)
Q Consensus 329 g~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~-~~l~~~~~~~~~~v~~~~~--~ 402 (884)
++-.+||+.++.++..|.+| ..+.+.+.-+|+. ..+++.+ +-++||... -+-+.+++||.+.|....| +
T Consensus 294 RTAnlwDVEtge~v~~LtGH-d~ELtHcstHptQ----rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGH-DSELTHCSTHPTQ----RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred ccceeeeeccCceeccccCc-chhccccccCCcc----eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC
Confidence 99999999999999999998 6778888888886 6677665 789999863 2446678999999966666 7
Q ss_pred ceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002753 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (884)
Q Consensus 403 ~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~ 481 (884)
..+++|+.|.++++|++.+... |...+....+++.+++|..+..+|.--.+..+ +||++
T Consensus 369 d~vVSgSDDrTvKvWdLrNMRs--------------------plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 369 DRVVSGSDDRTVKVWDLRNMRS--------------------PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred CceeecCCCceEEEeeeccccC--------------------cceeeecCCccceeEeecCCceEEeccCCceEEEEecC
Confidence 8899999999999999988766 55555667899999999999999999999999 99999
Q ss_pred CCcEEEec-CccceeeeEEEEEEEeCCEEE
Q 002753 482 QKKWRVFG-DITQEQKIQSKGLLWLGKIIV 510 (884)
Q Consensus 482 s~~w~~f~-~~~~e~~~~v~~~~W~~~~lv 510 (884)
..+....- ...|-+.-.|...+|..+..+
T Consensus 429 G~RlaRlPrtsRqgHrRMV~c~AW~eehp~ 458 (481)
T KOG0300|consen 429 GNRLARLPRTSRQGHRRMVTCCAWLEEHPA 458 (481)
T ss_pred CCccccCCcccccccceeeeeeeccccCcc
Confidence 87754332 112223334678889865443
No 100
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.75 E-value=1.7e-15 Score=168.43 Aligned_cols=405 Identities=14% Similarity=0.107 Sum_probs=237.7
Q ss_pred CeEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCC--
Q 002753 31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGK-- 108 (884)
Q Consensus 31 g~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~-- 108 (884)
++.+...+.++++||+++ .+-.+..+.+-. ..++++.=+|-=..+|+|+.+|.|.++++..+..-..++..
T Consensus 173 NKIvvGs~~G~lql~Nvr-t~K~v~~f~~~~------s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g 245 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVR-TGKVVYTFQEFF------SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWG 245 (910)
T ss_pred eeEEEeecCCcEEEEEec-cCcEEEEecccc------cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcccc
Confidence 344555678999999996 555555544322 34567777776677888888888888888665532222111
Q ss_pred ----------CC---------CCceeeeeeeeeeccccccccceeEEEE-eecCCeEE-EEecCCcEEEEecCCccccce
Q 002753 109 ----------QP---------SGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKHML-LGLSDGSLYSISWKGEFYGAF 167 (884)
Q Consensus 109 ----------~~---------~~~~l~~~~~~~~~~~~~~~~~~~v~~i-~~~~~~ll-v~~~~g~i~~~~w~~~~~~~~ 167 (884)
+. ..+.+|+++-..........+.+++... ...++-++ .+..|..++.|..|...+.+.
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR 325 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcch
Confidence 10 1133444322221112222333333332 22344444 445678888877764433322
Q ss_pred eeeccCCC---Cccceeecc--------cCCCCc---ceec-----CCCcc---c---cc----cccCCCccEEEEEEcC
Q 002753 168 ELVHSSND---SSVAALSHH--------FPSNGL---ASVD-----TSGAF---V---SD----HKFPISSAIIWLELCL 218 (884)
Q Consensus 168 ~l~~~~~~---~~~i~~~~~--------~~~~~l---~~~~-----~~~~~---~---~~----~~~~~~~~i~~i~~~~ 218 (884)
.++....+ ..+++...- ..|..+ .... +.++. . +. ....+--.|..+++..
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence 23222222 222322111 001000 0000 00000 0 00 0001112333333321
Q ss_pred CcceEEEEEcCCcEEEEeecCCccceeeeccccc---cc-------CCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCC
Q 002753 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---EL-------GSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (884)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~---~~-------~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~ 288 (884)
.-. .....++.+..++.....|+...... .. ....+.++++++-|++...|+..|+|-+|+++.
T Consensus 406 ~RE-----~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS- 479 (910)
T KOG1539|consen 406 ARE-----KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS- 479 (910)
T ss_pred chh-----hhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-
Confidence 100 01122334444444455666543211 11 112345589999999999999999999999987
Q ss_pred CcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccc
Q 002753 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP 368 (884)
Q Consensus 289 ~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~ 368 (884)
+-... .++.++.|.++|+.++...-++.+++++.+|-+++||..+..+..+++-. ..+..+.++... ..
T Consensus 480 Gi~r~-----sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--~~~~~iv~hr~s----~l 548 (910)
T KOG1539|consen 480 GIHRK-----SFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG--SSITGIVYHRVS----DL 548 (910)
T ss_pred Ceeec-----ccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC--CCcceeeeeehh----hh
Confidence 43332 23344569999999999888999999999999999999998888777642 345555555443 33
Q ss_pred eeecc---eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEe
Q 002753 369 LMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (884)
Q Consensus 369 l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~ 442 (884)
++.+. .+++.|..+.++.+.+.||.++|.++.| ++.+++++.|+++++||+..+..
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l------------------ 610 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL------------------ 610 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce------------------
Confidence 33222 8899999999999999999999966555 99999999999999999877653
Q ss_pred ecccccccCCCceEEEEEccCCCEEEEEeCCceE--EEEc
Q 002753 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDI 480 (884)
Q Consensus 443 ~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i--iwd~ 480 (884)
.. -..-..|..++.|||+|.+||++-.|+.- +|.-
T Consensus 611 --ID-~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 611 --ID-GLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred --ee-eEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 11 11224578899999999999999887543 7754
No 101
>PTZ00420 coronin; Provisional
Probab=99.75 E-value=2.8e-16 Score=179.12 Aligned_cols=217 Identities=12% Similarity=0.106 Sum_probs=156.8
Q ss_pred ccCCCccEEEEEEcCCcceEEEEEcC-CcEEEEeecCCccceeeecccc-----------cccCCCCcEE-EEEcCCCCE
Q 002753 204 KFPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKID-----------KELGSGDAVC-ASIAPEQQI 270 (884)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~d~~i~~w~~~~~~-----------~~~~h~~~v~-va~sp~~~~ 270 (884)
+.+|...|.+++| +|+ +.++++++.|+++++|+..... .+.+|...+. ++|+|++..
T Consensus 70 L~gH~~~V~~laf----------sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~ 139 (568)
T PTZ00420 70 LKGHTSSILDLQF----------NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY 139 (568)
T ss_pred EcCCCCCEEEEEE----------cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe
Confidence 3456777888876 454 7788999999999999976431 1257888887 999999875
Q ss_pred -EEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecccc
Q 002753 271 -LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS 349 (884)
Q Consensus 271 -la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~ 349 (884)
+|+|+.||+|++||+.+ ++....+. |...|.+++|+|||..|++++.|+.|++||+.++....++.+|
T Consensus 140 iLaSgS~DgtIrIWDl~t-g~~~~~i~---------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH- 208 (568)
T PTZ00420 140 IMCSSGFDSFVNIWDIEN-EKRAFQIN---------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH- 208 (568)
T ss_pred EEEEEeCCCeEEEEECCC-CcEEEEEe---------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc-
Confidence 57999999999999987 55444443 4578999999999999999999999999999999988888887
Q ss_pred ccceee-----eeecCCCCCCccceeecc-------eeEEEecCC-ceEEEEec--CCcceEE-EEee--cceeecccCC
Q 002753 350 LSSISS-----PIVKPNQDCKYEPLMSGT-------SMMQWDEYG-YRLYAIEE--GSSERVL-IFSF--GKCCLNRGVS 411 (884)
Q Consensus 350 ~~~v~s-----~~~s~~~~~~~~~l~sg~-------~i~~W~~~~-~~l~~~~~--~~~~~v~-~~~~--~~~~~s~~~d 411 (884)
.+.+.+ ..|++++ ..+++++ ++.+|+.+. .+.+.... .+.+.+. .+.. +..+++|+.|
T Consensus 209 ~g~~~s~~v~~~~fs~d~----~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDD----NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred cCCceeEEEEeeeEcCCC----CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 333322 2344665 5666543 489999984 44444432 2223331 2222 6788899999
Q ss_pred CCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCC
Q 002753 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (884)
Q Consensus 412 ~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG 464 (884)
+++++|++..+... ....+. +..|++.++|.|+-
T Consensus 285 ~tIr~~e~~~~~~~------------------~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 285 GNCRYYQHSLGSIR------------------KVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CeEEEEEccCCcEE------------------eecccc-cCCCccceEEcccc
Confidence 99999998654211 122333 66789999999863
No 102
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=7.4e-17 Score=169.00 Aligned_cols=228 Identities=18% Similarity=0.239 Sum_probs=174.2
Q ss_pred CCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc----cCCCCcEE--EEEcCCCCEEEEEecCCe
Q 002753 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC--ASIAPEQQILAVGTRRGV 279 (884)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~~h~~~v~--va~sp~~~~la~g~~dg~ 279 (884)
..+.+|+++. +.+||+.++++..-.++.+||...+... ......-| +++|||.++..+++.||.
T Consensus 463 ~rdnyiRSck----------L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGn 532 (705)
T KOG0639|consen 463 NRDNYIRSCK----------LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGN 532 (705)
T ss_pred CcccceeeeE----------ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCc
Confidence 3455565544 6899999999999889999998866432 12223345 899999999999999999
Q ss_pred EEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 002753 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (884)
Q Consensus 280 v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s 359 (884)
|+|||+.+ ...++.+++ |+..+.|+..|+||+.|-+|+-|++||.||+..++....... .+.|.++..+
T Consensus 533 I~vwDLhn-q~~VrqfqG--------htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF--~SQIfSLg~c 601 (705)
T KOG0639|consen 533 IAVWDLHN-QTLVRQFQG--------HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF--SSQIFSLGYC 601 (705)
T ss_pred EEEEEccc-ceeeecccC--------CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh--hhhheecccC
Confidence 99999998 788999999 999999999999999999999999999999987764433211 3567778888
Q ss_pred CCCCCCccceeecc-eeEEE--ecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCC
Q 002753 360 PNQDCKYEPLMSGT-SMMQW--DEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (884)
Q Consensus 360 ~~~~~~~~~l~sg~-~i~~W--~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~ 433 (884)
|++ +-++-|- +.-+| ...+.+-.+. .-|+..|+.+.| |+.+++.+.|+.+..|..-+|..
T Consensus 602 P~~----dWlavGMens~vevlh~skp~kyql-hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas--------- 667 (705)
T KOG0639|consen 602 PTG----DWLAVGMENSNVEVLHTSKPEKYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--------- 667 (705)
T ss_pred CCc----cceeeecccCcEEEEecCCccceee-cccccEEEEEEecccCceeeecCchhhhhhccCccccc---------
Confidence 887 6555443 33333 2222222222 346677877776 99999999999999999877765
Q ss_pred CCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002753 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 434 ~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~ 480 (884)
... ...+.+|.++.+|.|.+|+++|+.|..+ +|.+
T Consensus 668 -----------iFq-skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 668 -----------IFQ-SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -----------eee-ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 111 1235689999999999999999999888 8875
No 103
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=5.5e-16 Score=154.81 Aligned_cols=219 Identities=16% Similarity=0.180 Sum_probs=167.1
Q ss_pred EcCCcEEEEeecCCccceeeecccccc-----cCC----CCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceE---E
Q 002753 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGS----GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR---T 294 (884)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~~h----~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~---~ 294 (884)
-|+-.++++++.+..|++||..+++.. ..| ..+.+++|||||..|..| ...+|++||+...+.... +
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhh
Confidence 366677888888888999998887654 122 346679999999999875 567999999954343222 1
Q ss_pred EeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 002753 295 VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (884)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~ 373 (884)
+...+. +..|-+.|++|+| +...+|+|+.-..+-++.-.++.++..+.+| .+.|+.+.|.++| +.+.+|.
T Consensus 199 ~~~~k~----gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edG----n~lfsGa 269 (406)
T KOG2919|consen 199 VTKGKF----GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDG----NKLFSGA 269 (406)
T ss_pred hhcccc----cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCc----Ceecccc
Confidence 111111 2478899999999 5669999999889999998888899999888 7889999999999 8888887
Q ss_pred ----eeEEEecCCce-EEEEecCCc----ceE-EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEe
Q 002753 374 ----SMMQWDEYGYR-LYAIEEGSS----ERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (884)
Q Consensus 374 ----~i~~W~~~~~~-l~~~~~~~~----~~v-~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~ 442 (884)
.+..||.+..+ .+..+..|. ++| +.+.+ ++.+++|+.||.+++|++..-.+.
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~----------------- 332 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE----------------- 332 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc-----------------
Confidence 89999997643 333333332 344 66666 889999999999999998764442
Q ss_pred ecccccccCCCceEEEEEccCCCEEEEEeCCc
Q 002753 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (884)
Q Consensus 443 ~~p~~~~~~~~~I~~va~S~dG~~lavag~dg 474 (884)
+..+..+...++.++++|--..+|+++...
T Consensus 333 --~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 333 --VSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred --ccccccccccccceecCcccceeeeccCce
Confidence 556777888899999999999999887543
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=8.9e-16 Score=152.27 Aligned_cols=234 Identities=17% Similarity=0.277 Sum_probs=167.7
Q ss_pred CCcEE-EEEcC-CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEE
Q 002753 257 GDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (884)
Q Consensus 257 ~~~v~-va~sp-~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW 334 (884)
++.+. ++||| ...+++.|+.||+||+|+++..+....... ..|.++|.+++|+.||..+++|+.|+.+++|
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-------~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-------QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh-------hccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 56666 99999 567788999999999999987433333111 1289999999999999999999999999999
Q ss_pred eccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee-cceeecccC
Q 002753 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGV 410 (884)
Q Consensus 335 ~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~ 410 (884)
|+.+++ ..++..| ...|..+.|-+.. .++.+++|+ +++.||.+....+.+..- .+++++.+. -..++.+..
T Consensus 100 DL~S~Q-~~~v~~H-d~pvkt~~wv~~~--~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~pm~vVata 174 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAH-DAPVKTCHWVPGM--NYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLYPMAVVATA 174 (347)
T ss_pred EccCCC-eeeeeec-ccceeEEEEecCC--CcceeEecccccceeecccCCCCeeeeeec-cceeeehhccCceeEEEec
Confidence 999995 5555566 7789998887654 246789998 999999998887777643 678888887 344455555
Q ss_pred CCCceeeeeeecCCeEEEEecCCCCceeEEEeeccccccc----CCCceEEEEEccCCCEEEEEeCCceE-EEEccCC--
Q 002753 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS----QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-- 483 (884)
Q Consensus 411 d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~----~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~-- 483 (884)
+..+.++.+.++.. .+.. -++.+||+|.-+|+.-.|.|+-.|.+ +..+..+
T Consensus 175 ~r~i~vynL~n~~t----------------------e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 175 ERHIAVYNLENPPT----------------------EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred CCcEEEEEcCCCcc----------------------hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 66666655543322 2222 24669999999998888999999999 9988875
Q ss_pred c-EEEecCccc---ee--eeEEEEEEEeC--CEEEEEEEecCCCeEEEEEeeCC
Q 002753 484 K-WRVFGDITQ---EQ--KIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (884)
Q Consensus 484 ~-w~~f~~~~~---e~--~~~v~~~~W~~--~~lv~~~~~~~~~~~elr~y~~~ 529 (884)
+ =..|.-... -. -+.|.+++++. ..++++ +++..+.+|+++
T Consensus 233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTa-----GsDGtf~FWDkd 281 (347)
T KOG0647|consen 233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTA-----GSDGTFSFWDKD 281 (347)
T ss_pred cCceeEEEeccCCCCCCceEEecceEeecccceEEEe-----cCCceEEEecch
Confidence 1 112221111 11 24466677764 445554 455677889875
No 105
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.1e-16 Score=170.71 Aligned_cols=264 Identities=16% Similarity=0.225 Sum_probs=197.9
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee
Q 002753 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (884)
Q Consensus 262 va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l 341 (884)
+.|+ ....+|+|. ...|.+|+..+ +........ +.+.|+++.|+++|.+||+|..+|.|.|||....+.
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s-~~v~~l~~~--------~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~ 251 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASS-GSVTELCSF--------GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK 251 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCC-CceEEeEec--------CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc
Confidence 6777 566788865 35799999887 554444444 478899999999999999999999999999999999
Q ss_pred EEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEE-ecCCcceEEEEee---cceeecccCCCCc
Q 002753 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERVLIFSF---GKCCLNRGVSGMT 414 (884)
Q Consensus 342 ~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~-~~~~~~~v~~~~~---~~~~~s~~~d~~~ 414 (884)
..++.+++...|.++++.. ..+.+|+ .+..++....+.... ..+|...|..+.+ ++.+++|+-|+.+
T Consensus 252 ~~~~~~~h~~rvg~laW~~------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~ 325 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWNS------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVV 325 (484)
T ss_pred cccccCCcCceeEEEeccC------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccce
Confidence 9999984588899999973 4566665 788888877655544 7789999966666 8899999999999
Q ss_pred eeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccC-CCEEEEEe--CCceE-EEEccCCcEEEecC
Q 002753 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAG--LHGLI-LYDIRQKKWRVFGD 490 (884)
Q Consensus 415 ~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~d-G~~lavag--~dg~i-iwd~~s~~w~~f~~ 490 (884)
.+|+...... +..+..|...|..++|+|- ...||+|| .|+.+ +||+.+|.-- ..
T Consensus 326 ~Iwd~~~~~p--------------------~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i--~~ 383 (484)
T KOG0305|consen 326 FIWDGLSPEP--------------------KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI--DS 383 (484)
T ss_pred EeccCCCccc--------------------cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe--cc
Confidence 9999733322 5678899999999999996 66889885 68899 9999988521 11
Q ss_pred ccceeeeEEEEEEEeCCE--EEEEEEecCCCeEEEEEeeCCCCCCcceEEEEecCCccE--EEEccCCEEEEEEcCCeEE
Q 002753 491 ITQEQKIQSKGLLWLGKI--IVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPI--VMDVYEDYILVTYRPFDVH 566 (884)
Q Consensus 491 ~~~e~~~~v~~~~W~~~~--lv~~~~~~~~~~~elr~y~~~~l~~~~~l~~~~~~~~~~--~~~~~~~~llv~~~~~~i~ 566 (884)
. ...-.|..+.|.+++ +++++- ....+|++|.-+.+..-..+. -+...++ .++++++.++++.+|..++
T Consensus 384 v--dtgsQVcsL~Wsk~~kEi~sthG---~s~n~i~lw~~ps~~~~~~l~--gH~~RVl~la~SPdg~~i~t~a~DETlr 456 (484)
T KOG0305|consen 384 V--DTGSQVCSLIWSKKYKELLSTHG---YSENQITLWKYPSMKLVAELL--GHTSRVLYLALSPDGETIVTGAADETLR 456 (484)
T ss_pred c--ccCCceeeEEEcCCCCEEEEecC---CCCCcEEEEeccccceeeeec--CCcceeEEEEECCCCCEEEEecccCcEE
Confidence 1 111347789999776 766533 234588998875332222222 2233344 4456778999999999999
Q ss_pred EEEEE
Q 002753 567 IFHVK 571 (884)
Q Consensus 567 i~~~~ 571 (884)
+|.+-
T Consensus 457 fw~~f 461 (484)
T KOG0305|consen 457 FWNLF 461 (484)
T ss_pred ecccc
Confidence 99875
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=1e-15 Score=159.94 Aligned_cols=262 Identities=15% Similarity=0.201 Sum_probs=191.2
Q ss_pred eEEEEEcCCcEEEEeecCCccceeeecccccc---------------------cCCCCc-EEEEEcCCCCEEEEEecCCe
Q 002753 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---------------------LGSGDA-VCASIAPEQQILAVGTRRGV 279 (884)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---------------------~~h~~~-v~va~sp~~~~la~g~~dg~ 279 (884)
..+++++|++..++++.++++.-|+..++... .+|.+- +++++|+|+++||+|+.|..
T Consensus 146 ~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~ 225 (479)
T KOG0299|consen 146 TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRH 225 (479)
T ss_pred eEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCce
Confidence 44567888888888888888777765543311 145554 45999999999999999999
Q ss_pred EEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 002753 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (884)
Q Consensus 280 v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s 359 (884)
|.||+.++ .+.++.+++ |.+.|.+++|--.-..|.+++.|+++++|++.....+.++.+| .+.|.++...
T Consensus 226 v~Iw~~~t-~ehv~~~~g--------hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH-qd~v~~IdaL 295 (479)
T KOG0299|consen 226 VQIWDCDT-LEHVKVFKG--------HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH-QDGVLGIDAL 295 (479)
T ss_pred EEEecCcc-cchhhcccc--------cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC-ccceeeechh
Confidence 99999998 888988888 9999999999988889999999999999999988888888888 6777776544
Q ss_pred CCCCCCccceeecc----eeEEEecCCceEEEEecCCcceEEEEee--cceeecccCCCCceeeeeeecCCeEEEEecCC
Q 002753 360 PNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (884)
Q Consensus 360 ~~~~~~~~~l~sg~----~i~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~ 433 (884)
.- +.+++.. ++++|.... +.-.+..++.+.+=+..| ...+++||.+|++.+|.+..... ++.+.-..
T Consensus 296 ~r-----eR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp-lf~~~~AH 368 (479)
T KOG0299|consen 296 SR-----ERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP-LFTSRLAH 368 (479)
T ss_pred cc-----cceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCc-eeEeeccc
Confidence 33 3333322 899999843 333344566667755555 67889999999999999876443 33222110
Q ss_pred CCceeEEEeeccc-ccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc--EEEecCccceeeeE--EEEEEEe--
Q 002753 434 TDELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQ--SKGLLWL-- 505 (884)
Q Consensus 434 ~~~~~w~~~~~p~-~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~--w~~f~~~~~e~~~~--v~~~~W~-- 505 (884)
. ..|. .-.+++.+|++++..|....+|+|+.+|.+ +|-+..|- ...+ .+-.+. |.+++|.
T Consensus 369 g--------v~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l----~~ls~~GfVNsl~f~~s 436 (479)
T KOG0299|consen 369 G--------VIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLL----YSLSLVGFVNSLAFSNS 436 (479)
T ss_pred c--------ccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccccee----eecccccEEEEEEEccC
Confidence 0 0011 123445689999999999999999999999 99999882 2222 122222 5577775
Q ss_pred CCEEEEE
Q 002753 506 GKIIVVC 512 (884)
Q Consensus 506 ~~~lv~~ 512 (884)
++.+++|
T Consensus 437 gk~ivag 443 (479)
T KOG0299|consen 437 GKRIVAG 443 (479)
T ss_pred CCEEEEe
Confidence 4556666
No 107
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.72 E-value=4.2e-17 Score=167.75 Aligned_cols=227 Identities=16% Similarity=0.163 Sum_probs=178.6
Q ss_pred ccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCe
Q 002753 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGV 279 (884)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~ 279 (884)
+.+..+.|++++| .++++..+..++|+..++|+....+.. .||.+-++ +.|.-....+++|+.|.+
T Consensus 215 LaGs~g~it~~d~----------d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt 284 (459)
T KOG0288|consen 215 LAGSLGNITSIDF----------DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT 284 (459)
T ss_pred hhccCCCcceeee----------cCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccch
Confidence 3455677888887 577888888888999999998776543 78999888 777766666999999999
Q ss_pred EEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 002753 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (884)
Q Consensus 280 v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s 359 (884)
|++||+.. ..+.++.-. ...+.+|..+ +..+++|-.|++|++||..+..+..+...+ +.|+++..+
T Consensus 285 iK~WDl~k-~~C~kt~l~---------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls 350 (459)
T KOG0288|consen 285 IKLWDLQK-AYCSKTVLP---------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLS 350 (459)
T ss_pred hhhhhhhh-hheeccccc---------cccccceEec--ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeec
Confidence 99999987 666654332 3345555555 678899999999999999999888888876 479999999
Q ss_pred CCCCCCccceeecc---eeEEEecCCceEEEEecC------CcceEEEEee-cceeecccCCCCceeeeeeecCCeEEEE
Q 002753 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG------SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (884)
Q Consensus 360 ~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~------~~~~v~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~ 429 (884)
+++ ..+.+.+ ++.+.+..++++...... ++-.-..|++ +.++++||.|+.+++|++..++..-
T Consensus 351 ~~g----~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~--- 423 (459)
T KOG0288|consen 351 MDG----LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK--- 423 (459)
T ss_pred cCC----eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE---
Confidence 998 6666555 788889998888777643 3333378888 8899999999999999998876531
Q ss_pred ecCCCCceeEEEeeccccccc--CCCceEEEEEccCCCEEEEEeCCceE-EE
Q 002753 430 QSEDTDELKILHLNLPVSYIS--QNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (884)
Q Consensus 430 ~~~~~~~~~w~~~~~p~~~~~--~~~~I~~va~S~dG~~lavag~dg~i-iw 478 (884)
.+.. .+..|.+++|+|.|.+++++++++.+ +|
T Consensus 424 -----------------~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 424 -----------------VLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -----------------EeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 2222 22359999999999999999999988 88
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.71 E-value=6e-16 Score=168.78 Aligned_cols=214 Identities=15% Similarity=0.264 Sum_probs=172.3
Q ss_pred cCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCC
Q 002753 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (884)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~ 303 (884)
.|+-.+++++.|.++.+|.......+ .+|..-|| ++...++. +.+|+.|.++++|... ++...+.+
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~~l~g------ 138 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVYSLQG------ 138 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch---hhhcccCC------
Confidence 45555777888888888876665544 79999998 88777777 8999999999999874 45566777
Q ss_pred CCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEec
Q 002753 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (884)
Q Consensus 304 ~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~ 380 (884)
|+.+|++++.-|++ .++||+.|++|++|.- ++++.++.+| .+-|.++++-++. .++|.+ .++.|+.
T Consensus 139 --H~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gH-tD~VRgL~vl~~~-----~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 139 --HTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGH-TDCVRGLAVLDDS-----HFLSCSNDGSIRLWDL 207 (745)
T ss_pred --cchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccc-hhheeeeEEecCC-----CeEeecCCceEEEEec
Confidence 99999999999999 7889999999999964 7889999998 8889999988874 344444 8999999
Q ss_pred CCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEE
Q 002753 381 YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (884)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~ 457 (884)
+++++....+|+.-++.++. ...+++++.|+++++|... . .-+.+++|.+ .|++
T Consensus 208 -~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e-------------~~q~I~lPtt------siWs 264 (745)
T KOG0301|consen 208 -DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---E-------------CVQVITLPTT------SIWS 264 (745)
T ss_pred -cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC---c-------------eEEEEecCcc------ceEE
Confidence 56677777899999988884 6788999999999999854 1 1144555653 4788
Q ss_pred EEEccCCCEEEEEeCCceE-EEEccCCcEE
Q 002753 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (884)
Q Consensus 458 va~S~dG~~lavag~dg~i-iwd~~s~~w~ 486 (884)
+.+=++|. +++||.||.+ +|.....||-
T Consensus 265 a~~L~NgD-Ivvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 265 AKVLLNGD-IVVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred EEEeeCCC-EEEeccCceEEEEEecccccC
Confidence 88888886 6789999999 9998877763
No 109
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.5e-14 Score=145.22 Aligned_cols=276 Identities=14% Similarity=0.190 Sum_probs=189.8
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEec--CcEEEEEEEE
Q 002753 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS--SLYLHIFKVQ 97 (884)
Q Consensus 21 ~~~vv~fspdg~lla~~t-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~--~g~l~l~~l~ 97 (884)
.-.-+.|+++|.++++.+ +++++||+.. .+.++... .+ .++|.. .++|-.....+.-+++ |.+|+.-++.
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~-~g~~~~ti----~s-kkyG~~-~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSL-SGKQVKTI----NS-KKYGVD-LACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcC-CCceeeEe----ec-cccccc-EEEEecCCceEEEccCCCCCceEEEEee
Confidence 344588999999988875 5699999995 54443332 22 245654 5666655555555555 6788888887
Q ss_pred ecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEE--EeecCCeEEEEecCCcEEEEecCCccccceeeeccCCC
Q 002753 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (884)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~--i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~ 175 (884)
...---++++|. ..|.+ +++.++.++.++-|.+++.|+.........
T Consensus 89 dNkylRYF~GH~-----------------------~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-------- 137 (311)
T KOG1446|consen 89 DNKYLRYFPGHK-----------------------KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-------- 137 (311)
T ss_pred cCceEEEcCCCC-----------------------ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--------
Confidence 554434454444 33333 345567888889999999854432111100
Q ss_pred CccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc--
Q 002753 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-- 253 (884)
Q Consensus 176 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-- 253 (884)
. ......++++.|+|-++|++.....|+++|.....+-
T Consensus 138 --------------------------l--------------~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 138 --------------------------L--------------NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred --------------------------E--------------ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence 0 0011234667889999998888778888887754221
Q ss_pred -------cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEE
Q 002753 254 -------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (884)
Q Consensus 254 -------~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (884)
..+..+..+.|||+|+.|..+..++.+.+-|.-+ +..+.++.++... -.-+ .+.+|+|||+++.+|+
T Consensus 178 ~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~----~~~~-~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 178 TTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNA----GNLP-LSATFTPDSKFVLSGS 251 (311)
T ss_pred eeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCC----CCcc-eeEEECCCCcEEEEec
Confidence 1234455599999999999999999999999888 7777777773210 0111 5678999999999999
Q ss_pred cCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc-eeEEEecCCce
Q 002753 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYR 384 (884)
Q Consensus 327 ~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~-~i~~W~~~~~~ 384 (884)
.||+|.+|++.++..+..+++.....++.+.|.|-- ..+++++ ...+|-+...+
T Consensus 252 ~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~----~mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 252 DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY----AMFVSASSNLVFWLPDEDA 306 (311)
T ss_pred CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce----eeeeecCceEEEEeccccc
Confidence 999999999999999999988446778888888875 5666665 78888776443
No 110
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.4e-16 Score=150.75 Aligned_cols=249 Identities=14% Similarity=0.231 Sum_probs=169.9
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCC--cceEEEeeccCCCCCCCCcCeEEEEECC--CCCEEEEEEcC
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKS 328 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~d 328 (884)
..|++.+. +...--|+.|||++.|++||||.+...+ .++.++.+ |.|||..++|.. -|.+||+++.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G--------h~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG--------HSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecC--------CCCCeeEEeecccccCcEeeEeecC
Confidence 46778777 6666679999999999999999998754 35567787 999999999987 79999999999
Q ss_pred CcEEEEeccCCeeEEEe---ccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeeccee
Q 002753 329 RGLTVWSVSGCRLMSTI---RQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCC 405 (884)
Q Consensus 329 g~v~vW~~~~~~l~~tl---~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~ 405 (884)
|.|.||.-.+++ .... ..| ..+|+++++.|.+ +-+. +
T Consensus 80 gkVIiWke~~g~-w~k~~e~~~h-~~SVNsV~waphe--------------------ygl~------------------L 119 (299)
T KOG1332|consen 80 GKVIIWKEENGR-WTKAYEHAAH-SASVNSVAWAPHE--------------------YGLL------------------L 119 (299)
T ss_pred ceEEEEecCCCc-hhhhhhhhhh-cccceeecccccc--------------------cceE------------------E
Confidence 999999988874 3222 223 4556665555543 3332 3
Q ss_pred ecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccC---C-----------CEEEEEe
Q 002753 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD---G-----------MFLAVAG 471 (884)
Q Consensus 406 ~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~d---G-----------~~lavag 471 (884)
+.++.||.+.+........ |.. +.....|.--|+++++.|- | +.||+||
T Consensus 120 acasSDG~vsvl~~~~~g~--------------w~t---~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 120 ACASSDGKVSVLTYDSSGG--------------WTT---SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred EEeeCCCcEEEEEEcCCCC--------------ccc---hhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 4455666665544332211 111 1223356667888888776 5 7799999
Q ss_pred CCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCE-----EEEEEEecCCCeEEEEEeeCC-CCCC--cceEEEEec
Q 002753 472 LHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI-----IVVCNYIDSSNTYELLFYPRY-HLDQ--SSLLCRKSL 542 (884)
Q Consensus 472 ~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~-----lv~~~~~~~~~~~elr~y~~~-~l~~--~~~l~~~~~ 542 (884)
-|.++ +|...++.|++-... ..+.--|++++|.+.. .|+.| +.+..+.+|... .... ..+++ ++
T Consensus 183 cDn~VkiW~~~~~~w~~e~~l-~~H~dwVRDVAwaP~~gl~~s~iAS~----SqDg~viIwt~~~e~e~wk~tll~--~f 255 (299)
T KOG1332|consen 183 CDNLVKIWKFDSDSWKLERTL-EGHKDWVRDVAWAPSVGLPKSTIASC----SQDGTVIIWTKDEEYEPWKKTLLE--EF 255 (299)
T ss_pred CccceeeeecCCcchhhhhhh-hhcchhhhhhhhccccCCCceeeEEe----cCCCcEEEEEecCccCcccccccc--cC
Confidence 99999 999999999864321 1222348899996432 33322 344678888875 3332 23443 36
Q ss_pred CCccEEE--EccCCEEEEEEcCCeEEEEEEEEec
Q 002753 543 LAKPIVM--DVYEDYILVTYRPFDVHIFHVKLFG 574 (884)
Q Consensus 543 ~~~~~~~--~~~~~~llv~~~~~~i~i~~~~~~~ 574 (884)
|.+.-.+ ++.++.|.|.+.|+.+.+|+-.++|
T Consensus 256 ~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 256 PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred CcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 6655444 5789999999999999999765443
No 111
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.70 E-value=1.4e-15 Score=160.45 Aligned_cols=286 Identities=14% Similarity=0.195 Sum_probs=193.1
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEE
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~ 332 (884)
.+|+.+|. +++.|.|..+++|+.|-+|++||+.......+.++.. .+..+..|++++||+.|..|.+.+...-.+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l----~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL----QPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhcc----CcccccccceeeecCCCCeEEEEecCccee
Confidence 67788888 9999999999999999999999997533333333321 112456799999999999888888878999
Q ss_pred EEeccCCeeEEEec------------cccccceeeeeecCCCCCCccceeecc---eeEEEecCCce----EEEEecCCc
Q 002753 333 VWSVSGCRLMSTIR------------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR----LYAIEEGSS 393 (884)
Q Consensus 333 vW~~~~~~l~~tl~------------~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~----l~~~~~~~~ 393 (884)
|+|-.|...+...+ +| ...+++..|+|.. .+.+++.+ +.++|+.+..+ ++..-....
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGH-ia~lt~g~whP~~---k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGH-IAELTCGCWHPDN---KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCc-eeeeeccccccCc---ccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 99998877655443 34 6678888999986 23444444 99999987642 222222222
Q ss_pred ceE----EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeeccc--ccccCCC--ceEEEEEccCC
Q 002753 394 ERV----LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV--SYISQNW--PVQHVAASKDG 464 (884)
Q Consensus 394 ~~v----~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~--~~~~~~~--~I~~va~S~dG 464 (884)
.+| .+++. ++.+++|+.||++.+|+......+ |. .-.+|+. .|.|++||+||
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-------------------p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-------------------PVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccc-------------------cceEeeeccCCCCceeEEEecccc
Confidence 233 55666 889999999999999996322211 21 1235666 79999999999
Q ss_pred CEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeC--CEEEEEEEecC-CCeEEEEEeeCCCCCCcceEEEE
Q 002753 465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDS-SNTYELLFYPRYHLDQSSLLCRK 540 (884)
Q Consensus 465 ~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~--~~lv~~~~~~~-~~~~elr~y~~~~l~~~~~l~~~ 540 (884)
++|++-|.|+.+ +||+..-+-.++.-..-..-+.-+.+++.+ ..+++|....+ .....|.+|++-.|+ ...+.
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki 453 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKI 453 (641)
T ss_pred chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEe
Confidence 999999999999 999976543332211112223334555553 35555544333 334568999885443 34555
Q ss_pred ecCCccEEEEc---cCCEEEEEEcCCeEEEEE
Q 002753 541 SLLAKPIVMDV---YEDYILVTYRPFDVHIFH 569 (884)
Q Consensus 541 ~~~~~~~~~~~---~~~~llv~~~~~~i~i~~ 569 (884)
+++...+.-.. -=+.+.+.+.||.+++|.
T Consensus 454 ~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 55543333222 226789999999999984
No 112
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.70 E-value=2.4e-15 Score=157.38 Aligned_cols=200 Identities=13% Similarity=0.185 Sum_probs=141.1
Q ss_pred EEEEeecCCccceeeeccccc----------ccCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEccC-CCcceEEEeec
Q 002753 232 LMSCSVSKKGLKLAEFIKIDK----------ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAE-SASLIRTVSLY 298 (884)
Q Consensus 232 ~~~~~~~d~~i~~w~~~~~~~----------~~~h~~~v~-va~sp~-~~~la~g~~dg~v~lw~~~~-~~~~~~~l~~~ 298 (884)
.++++++|+++.+|+...... ..+|++.+. ++|+|. ..++++.+.|+.+.|||++. ..++.+...+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a- 270 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA- 270 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-
Confidence 355667788888888763322 168999999 999994 67899999999999999995 1344445555
Q ss_pred cCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccCC-eeEEEeccccccceeeeeecCCCCCCccceeecceeE
Q 002753 299 DWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMM 376 (884)
Q Consensus 299 ~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~~-~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~ 376 (884)
|+++|.|++|+| ++..||+|+.|++|++||+..- ..+.++.+| ...|..+.|+|.. +.
T Consensus 271 -------h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~----et-------- 330 (422)
T KOG0264|consen 271 -------HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHN----ET-------- 330 (422)
T ss_pred -------cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCC----Cc--------
Confidence 999999999999 6789999999999999999764 356777777 6677777777765 22
Q ss_pred EEecCCceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceE
Q 002753 377 QWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (884)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~ 456 (884)
.+++.+.|+.+.+||+..-.....--.+.+.+. .+...--||...|.
T Consensus 331 ---------------------------vLASSg~D~rl~vWDls~ig~eq~~eda~dgpp------EllF~HgGH~~kV~ 377 (422)
T KOG0264|consen 331 ---------------------------VLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP------ELLFIHGGHTAKVS 377 (422)
T ss_pred ---------------------------eeEecccCCcEEEEeccccccccChhhhccCCc------ceeEEecCcccccc
Confidence 224556667777777654332110000000000 00112238899999
Q ss_pred EEEEccCCC-EEEEEeCCceE-EEEccCCcE
Q 002753 457 HVAASKDGM-FLAVAGLHGLI-LYDIRQKKW 485 (884)
Q Consensus 457 ~va~S~dG~-~lavag~dg~i-iwd~~s~~w 485 (884)
..+|+|+.. .++++..|+.+ ||.+....|
T Consensus 378 DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~ 408 (422)
T KOG0264|consen 378 DFSWNPNEPWTIASVAEDNILQIWQMAENIY 408 (422)
T ss_pred cccCCCCCCeEEEEecCCceEEEeecccccc
Confidence 999999966 57788999999 999875543
No 113
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=1.9e-15 Score=150.87 Aligned_cols=236 Identities=13% Similarity=0.247 Sum_probs=166.7
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCC--EEEEEEcCCc
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG 330 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~--~Lasg~~dg~ 330 (884)
..|..++. +|+ ++.++|+|+.|-+|+|||+.. ...+..+-. |.|.|+++.|.++-. .|.+|++||.
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k-~~qlg~ll~--------HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRK-RKQLGILLS--------HAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccc-hhhhcceec--------cccceEEEEecCCcchhheeeecCCCc
Confidence 45777665 777 689999999999999999987 566666666 999999999999876 9999999999
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccC
Q 002753 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV 410 (884)
Q Consensus 331 v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~ 410 (884)
|.+|++..-.++.+++.| ...|+.++.+|.+ |.+++.+.
T Consensus 109 i~iw~~~~W~~~~slK~H-~~~Vt~lsiHPS~----------------------------------------KLALsVg~ 147 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAH-KGQVTDLSIHPSG----------------------------------------KLALSVGG 147 (362)
T ss_pred EEEEEcCCeEEeeeeccc-ccccceeEecCCC----------------------------------------ceEEEEcC
Confidence 999999988999999988 5568888888775 33466777
Q ss_pred CCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEEEecC
Q 002753 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGD 490 (884)
Q Consensus 411 d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~iiwd~~s~~w~~f~~ 490 (884)
|+.++.|++..|..... ++ +.+.. ..+.|+|.|.+++++++++.-+|.+.+-+ +|..
T Consensus 148 D~~lr~WNLV~Gr~a~v----------------~~---L~~~a--t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~--v~~~ 204 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFV----------------LN---LKNKA--TLVSWSPQGDHFVVSGRNKIDIYQLDNAS--VFRE 204 (362)
T ss_pred CceeeeehhhcCcccee----------------ec---cCCcc--eeeEEcCCCCEEEEEeccEEEEEecccHh--Hhhh
Confidence 88888888877765210 11 12222 23899999999999999997799987654 4433
Q ss_pred ccceeeeEEEEEEEe-CCEEEEEEEecCCCeEEEEEeeCCCCCCcceEE-EEecCCccEEEEc----cCCEEEEEEcCCe
Q 002753 491 ITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLC-RKSLLAKPIVMDV----YEDYILVTYRPFD 564 (884)
Q Consensus 491 ~~~e~~~~v~~~~W~-~~~lv~~~~~~~~~~~elr~y~~~~l~~~~~l~-~~~~~~~~~~~~~----~~~~llv~~~~~~ 564 (884)
...+ ..+....|. +..+++|. .+..+++++.+. ...++ ...++..+..+-+ ...+|+.+.+||.
T Consensus 205 i~~~--~r~l~~~~l~~~~L~vG~-----d~~~i~~~D~ds---~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~ 274 (362)
T KOG0294|consen 205 IENP--KRILCATFLDGSELLVGG-----DNEWISLKDTDS---DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF 274 (362)
T ss_pred hhcc--ccceeeeecCCceEEEec-----CCceEEEeccCC---CccceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence 2222 224456664 66777772 235677776641 11111 1122333333332 2235555888999
Q ss_pred EEEEEEEEec
Q 002753 565 VHIFHVKLFG 574 (884)
Q Consensus 565 i~i~~~~~~~ 574 (884)
|.+|++.+..
T Consensus 275 I~vWd~~~~~ 284 (362)
T KOG0294|consen 275 IKVWDIDMET 284 (362)
T ss_pred EEEEEccccc
Confidence 9999998764
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=3.6e-16 Score=172.36 Aligned_cols=182 Identities=15% Similarity=0.284 Sum_probs=134.5
Q ss_pred CCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCC
Q 002753 229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (884)
Q Consensus 229 dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~-~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~ 303 (884)
.-.++++|+.|+++|.||....+.. .+....++ |.|+|. +..+|++..+|.+++||++...++...+..
T Consensus 145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A------ 218 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA------ 218 (839)
T ss_pred CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc------
Confidence 3456778888888888887754332 45567788 999994 778999999999999999986667777777
Q ss_pred CCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc-----eeEEE
Q 002753 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----SMMQW 378 (884)
Q Consensus 304 ~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~-----~i~~W 378 (884)
|.|+|.|+.|+|++.+||+|++|+.|+||+..+++......-+....|..++|.|.-. ..+++.+ .+.+|
T Consensus 219 --H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~---~hLAtcsmv~dtsV~VW 293 (839)
T KOG0269|consen 219 --HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS---YHLATCSMVVDTSVHVW 293 (839)
T ss_pred --ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc---chhhhhhccccceEEEE
Confidence 9999999999999999999999999999999876643322222246788999999752 2333333 89999
Q ss_pred ecCC-ceEEEEecCCcceEEEEee----cceeecccCCCCceeeeeee
Q 002753 379 DEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIY 421 (884)
Q Consensus 379 ~~~~-~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~l~~ 421 (884)
|..- |-...+...|+..+..+-+ ...+.+++.|+++....+..
T Consensus 294 DvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 294 DVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 9865 4456677778777744444 23556777777765544433
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=8.4e-16 Score=148.06 Aligned_cols=235 Identities=19% Similarity=0.156 Sum_probs=169.5
Q ss_pred CCcEEEEeecCCccceeeecccc------cccCCCCcEE-EEEcC--CCCEEEEEecCCeEEEEEccCCCcce--EEEee
Q 002753 229 NGQLMSCSVSKKGLKLAEFIKID------KELGSGDAVC-ASIAP--EQQILAVGTRRGVVELYDLAESASLI--RTVSL 297 (884)
Q Consensus 229 dG~~~~~~~~d~~i~~w~~~~~~------~~~~h~~~v~-va~sp--~~~~la~g~~dg~v~lw~~~~~~~~~--~~l~~ 297 (884)
-|+.++++++|++++++...... .+.||..++. ++|.+ -|.+||+++.||.|.||.-.. ++-. .....
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~-g~w~k~~e~~~ 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN-GRWTKAYEHAA 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC-Cchhhhhhhhh
Confidence 37888888888888887765433 2379999998 88865 689999999999999998765 4322 22233
Q ss_pred ccCCCCCCCCcCeEEEEECCC--CCEEEEEEcCCcEEEEeccCC--eeEEEeccccccceeeeeecCCCCC---------
Q 002753 298 YDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDC--------- 364 (884)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spd--g~~Lasg~~dg~v~vW~~~~~--~l~~tl~~~~~~~v~s~~~s~~~~~--------- 364 (884)
|.+.|++++|.|. |-.||.|+.||.|.|.+..+. -....+...|.-.|+++.+.|....
T Consensus 101 --------h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~ 172 (299)
T KOG1332|consen 101 --------HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPA 172 (299)
T ss_pred --------hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcc
Confidence 9999999999997 558999999999999988643 2233333333667889988887321
Q ss_pred -Cccceeecc---eeEEEecCCce--EEEEecCCcceEEE--Eee-----cceeecccCCCCceeeeeeecCCeEEEEec
Q 002753 365 -KYEPLMSGT---SMMQWDEYGYR--LYAIEEGSSERVLI--FSF-----GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (884)
Q Consensus 365 -~~~~l~sg~---~i~~W~~~~~~--l~~~~~~~~~~v~~--~~~-----~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~ 431 (884)
+-..+++|. .+++|....++ +-..+++|.+-+.. ..+ ...+++++.|+++.+|.......
T Consensus 173 ~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e------- 245 (299)
T KOG1332|consen 173 AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE------- 245 (299)
T ss_pred cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC-------
Confidence 113477776 89999887652 33446788887733 323 34778999999999998652212
Q ss_pred CCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc-CCcEEEec
Q 002753 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QKKWRVFG 489 (884)
Q Consensus 432 ~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~-s~~w~~f~ 489 (884)
.|+ .+.+.....++.+++||..|..||+++.|..+ +|--+ .|+|+..+
T Consensus 246 ------~wk----~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 246 ------PWK----KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVG 295 (299)
T ss_pred ------ccc----ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEcc
Confidence 111 11222345679999999999999999999999 99765 56898654
No 116
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=2.3e-16 Score=170.72 Aligned_cols=231 Identities=16% Similarity=0.215 Sum_probs=176.5
Q ss_pred EEEcCCcEEEEeecCCccceeeeccccc-----ccCCCCcEE-EEE-cCCCCEEEEEecCCeEEEEEccCCCc-ceEEEe
Q 002753 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASI-APEQQILAVGTRRGVVELYDLAESAS-LIRTVS 296 (884)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~w~~~~~~~-----~~~h~~~v~-va~-sp~~~~la~g~~dg~v~lw~~~~~~~-~~~~l~ 296 (884)
+...+|+.+++++.|.++++|+...... +..|.+-|. +++ -++..++|+|+-|+.|.|||++.... .+..+.
T Consensus 80 iL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 80 ILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred HhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc
Confidence 3467899999999999999999886631 257888775 888 78899999999999999999987211 222222
Q ss_pred eccC-CCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--
Q 002753 297 LYDW-GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (884)
Q Consensus 297 ~~~~-~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~-- 373 (884)
...- ....++..+|.+++.++.|..+++|+..+-+++||..+++.+..+++| ...|..+..+.+| ..+++++
T Consensus 160 ~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH-TdNVr~ll~~dDG----t~~ls~sSD 234 (735)
T KOG0308|consen 160 NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-TDNVRVLLVNDDG----TRLLSASSD 234 (735)
T ss_pred ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc-ccceEEEEEcCCC----CeEeecCCC
Confidence 1111 111258889999999999999999999999999999999999999998 8889999999999 8888776
Q ss_pred -eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccc
Q 002753 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (884)
Q Consensus 374 -~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~ 449 (884)
++++|+.+..+++.+...|...+|++.. -+.+.+|+.|+.+..-++.+.....++ .
T Consensus 235 gtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli--------------------c 294 (735)
T KOG0308|consen 235 GTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI--------------------C 294 (735)
T ss_pred ceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe--------------------e
Confidence 9999999999999999999999988766 456778888888766555543322211 1
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002753 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 450 ~~~~~I~~va~S~dG~~lavag~dg~i-iwd~ 480 (884)
....||..+..+.+.+-+-+++.|+.| -|..
T Consensus 295 k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 295 KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred cCCCchhhhhhccccCCceeeeccccceecCC
Confidence 223456666666555555677877777 5543
No 117
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.69 E-value=2.8e-15 Score=155.20 Aligned_cols=218 Identities=18% Similarity=0.271 Sum_probs=171.1
Q ss_pred cEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 002753 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 259 ~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~ 337 (884)
.++ +..+|....+.+|+.|.++.++|... ++.+.++++ |+..|+++.++|+...+++++.|..|+||++.
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s-~q~l~~~~G--------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~ 291 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPS-NQILATLKG--------HTKKITSVKFHKDLDTVITASADEIIRVWSVP 291 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecch-hhhhhhccC--------cceEEEEEEeccchhheeecCCcceEEeeccc
Confidence 344 77788888999999999999999988 788889999 99999999999999999999999999999998
Q ss_pred CCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEE---ecCCceEEEEecCCcc--eE--EEEee-cceeeccc
Q 002753 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQW---DEYGYRLYAIEEGSSE--RV--LIFSF-GKCCLNRG 409 (884)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W---~~~~~~l~~~~~~~~~--~v--~~~~~-~~~~~s~~ 409 (884)
........+.| ...|+.+..+|++ +++++++....| +..++..+........ .+ .+|.+ |-.+.+|.
T Consensus 292 ~~s~~~~~~~h-~~~V~~ls~h~tg----eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 292 LSSEPTSSRPH-EEPVTGLSLHPTG----EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred cccCccccccc-cccceeeeeccCC----cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence 77666666666 7889999999999 999988855555 4555555544433222 23 45555 77888999
Q ss_pred CCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEe
Q 002753 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (884)
Q Consensus 410 ~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f 488 (884)
.|+.+++|++..+.+ ...+-+|.+||+.++|+.+|-|||++..||.+ +||++.-+ .|
T Consensus 367 ~d~~vkiwdlks~~~--------------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~ 424 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTN--------------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--NF 424 (506)
T ss_pred CCceEEEEEcCCccc--------------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--cc
Confidence 999999999887765 56788899999999999999999999999988 99997543 44
Q ss_pred cCccceeeeEEEEEEE--eCCEEEEE
Q 002753 489 GDITQEQKIQSKGLLW--LGKIIVVC 512 (884)
Q Consensus 489 ~~~~~e~~~~v~~~~W--~~~~lv~~ 512 (884)
....-+....+..+.. .+.+++++
T Consensus 425 kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred ceeeccccccceeEEEcCCCCeEEee
Confidence 3222222223444443 56777765
No 118
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.69 E-value=5.7e-13 Score=140.59 Aligned_cols=346 Identities=16% Similarity=0.151 Sum_probs=226.0
Q ss_pred ceEEEEEec--CeEEEEEcc---CeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEE
Q 002753 22 QQIIYFKVN--NGLLLIASP---CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (884)
Q Consensus 22 ~~vv~fspd--g~lla~~t~---~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l 96 (884)
.-+|+||+- |++++...+ .-+.+||. +....++..+.+. ..+..+.|.|-+..|.+...+|++-+|+.
T Consensus 157 V~~vaFsk~~~G~~l~~vD~s~~h~lSVWdW-qk~~~~~~vk~sn------e~v~~a~FHPtd~nliit~Gk~H~~Fw~~ 229 (626)
T KOG2106|consen 157 VTCVAFSKINGGSLLCAVDDSNPHMLSVWDW-QKKAKLGPVKTSN------EVVFLATFHPTDPNLIITCGKGHLYFWTL 229 (626)
T ss_pred ceeeeecccCCCceEEEecCCCccccchhhc-hhhhccCcceecc------ceEEEEEeccCCCcEEEEeCCceEEEEEc
Confidence 345889854 678888854 46899999 4555555544332 33467889999999999999999999988
Q ss_pred EecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeec-CCeEEEEecCCcEEEEecCCccccceeeeccCCC
Q 002753 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (884)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~ 175 (884)
+.+.-..... .++ +.....|.|+... +..++.|-++|.|.+|+ ..... .
T Consensus 230 ~~~~l~k~~~--------------~fe-----k~ekk~Vl~v~F~engdviTgDS~G~i~Iw~--~~~~~-~-------- 279 (626)
T KOG2106|consen 230 RGGSLVKRQG--------------IFE-----KREKKFVLCVTFLENGDVITGDSGGNILIWS--KGTNR-I-------- 279 (626)
T ss_pred cCCceEEEee--------------ccc-----cccceEEEEEEEcCCCCEEeecCCceEEEEe--CCCce-E--------
Confidence 6543211000 000 1111235565443 35677788899998754 32111 0
Q ss_pred CccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccccc---
Q 002753 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--- 252 (884)
Q Consensus 176 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~--- 252 (884)
.. .. ..|++.|-+ ++...||.++- +..|..+..||....+.
T Consensus 280 ----~k--------------------~~-~aH~ggv~~----------L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 280 ----SK--------------------QV-HAHDGGVFS----------LCMLRDGTLLS-GGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred ----Ee--------------------Ee-eecCCceEE----------EEEecCccEee-cCccceEEeccccccccccc
Confidence 00 01 134444433 34568888776 88888888998432211
Q ss_pred -ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCc
Q 002753 253 -ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (884)
Q Consensus 253 -~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~ 330 (884)
++.....++ ++=. .+. |.+|...+.|.-=+++. ....+..+ |......++-.|+...+++++.|+.
T Consensus 324 elPe~~G~iRtv~e~-~~d-i~vGTtrN~iL~Gt~~~--~f~~~v~g--------h~delwgla~hps~~q~~T~gqdk~ 391 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEG-KGD-ILVGTTRNFILQGTLEN--GFTLTVQG--------HGDELWGLATHPSKNQLLTCGQDKH 391 (626)
T ss_pred cCchhcCCeeEEecC-CCc-EEEeeccceEEEeeecC--CceEEEEe--------cccceeeEEcCCChhheeeccCcce
Confidence 133445565 4432 223 77777777776545543 33444556 8889999999999999999999999
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceE--EEEee-cce
Q 002753 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKC 404 (884)
Q Consensus 331 v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~ 404 (884)
+++|+ +.++..+..- ..++.++.|+|.+ .++-|. .-.+.+.++..++..-.. .+++ +.+++ +..
T Consensus 392 v~lW~--~~k~~wt~~~--~d~~~~~~fhpsg-----~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 392 VRLWN--DHKLEWTKII--EDPAECADFHPSG-----VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAF 461 (626)
T ss_pred EEEcc--CCceeEEEEe--cCceeEeeccCcc-----eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCE
Confidence 99999 5555544332 3567888999986 444444 445567777666655544 5555 55666 889
Q ss_pred eecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002753 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 405 ~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~ 480 (884)
++.|+.|+.+.++.+..+..+...+. +-+..||..+.||+|++++.+-+.|--+ .|..
T Consensus 462 lAvgs~d~~iyiy~Vs~~g~~y~r~~------------------k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 462 LAVGSHDNHIYIYRVSANGRKYSRVG------------------KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EEEecCCCeEEEEEECCCCcEEEEee------------------eecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 99999999998888766655322111 1233799999999999999999999888 8843
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.69 E-value=1.7e-15 Score=158.20 Aligned_cols=272 Identities=14% Similarity=0.169 Sum_probs=192.6
Q ss_pred CCCCc-EEEEEcCCCCEEEEEecCCeEEEEEccCCCcce-EEEe--------eccCCCCC-CCCcCeEEEEECCCCCEEE
Q 002753 255 GSGDA-VCASIAPEQQILAVGTRRGVVELYDLAESASLI-RTVS--------LYDWGYSM-DDTGPVSCIAWTPDNSAFA 323 (884)
Q Consensus 255 ~h~~~-v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~-~~l~--------~~~~~~~~-~h~~~V~~l~~spdg~~La 323 (884)
.|.-. ++++++|+.+++.+++.||+|.=|++.+ +... ..++ +.....++ +|...+.+++.||||++||
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~t-gk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLT-GKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhc-CcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 45544 4599999999999999999999999987 4422 1111 11222333 6999999999999999999
Q ss_pred EEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEe
Q 002753 324 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFS 400 (884)
Q Consensus 324 sg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~ 400 (884)
+|+.|+.|.||+..+...+..+.+| .+.|.+++|.... ..+.+++ ++++|+.+....+-++-||++.|..++
T Consensus 219 tgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt----~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGT----SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred ecCCCceEEEecCcccchhhccccc-ccceeeeeeecCc----cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 9999999999999999999999988 7889999997654 4455555 899999998887888889999997776
Q ss_pred e---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-
Q 002753 401 F---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (884)
Q Consensus 401 ~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i- 476 (884)
- .+.+..|+.|.++++|.+... . ...|.+|.+.+-|++|- +...+++|+.||.|
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~ee-s--------------------qlifrg~~~sidcv~~I-n~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEE-S--------------------QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIA 351 (479)
T ss_pred hhcccceEEeccccceeEEEecccc-c--------------------eeeeeCCCCCeeeEEEe-cccceeeccCCceEE
Confidence 6 555556669999999998322 2 12466778889999998 55678899999999
Q ss_pred EEEccCCcEEEec-Cccc----e-----eeeEEEEEEEe--CCEEEEEEEecCCCeEEEEEeeCC-CCCCcceEEEEecC
Q 002753 477 LYDIRQKKWRVFG-DITQ----E-----QKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLL 543 (884)
Q Consensus 477 iwd~~s~~w~~f~-~~~~----e-----~~~~v~~~~W~--~~~lv~~~~~~~~~~~elr~y~~~-~l~~~~~l~~~~~~ 543 (884)
+|++..++ .+|. ...| + +.+-|.+++-. .|.+++| +.+..+|+|-.+ .+-.-.++...+++
T Consensus 352 LWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG-----S~~G~vrLW~i~~g~r~i~~l~~ls~~ 425 (479)
T KOG0299|consen 352 LWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG-----SWSGCVRLWKIEDGLRAINLLYSLSLV 425 (479)
T ss_pred EeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEec-----CCCCceEEEEecCCccccceeeecccc
Confidence 99998776 3332 1111 0 11123333222 2333333 466889999986 44444455555555
Q ss_pred Ccc--EEEEccCCEEEEEE
Q 002753 544 AKP--IVMDVYEDYILVTY 560 (884)
Q Consensus 544 ~~~--~~~~~~~~~llv~~ 560 (884)
.=+ +.++..+..++++.
T Consensus 426 GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 426 GFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cEEEEEEEccCCCEEEEec
Confidence 422 23334455566644
No 120
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3e-15 Score=149.10 Aligned_cols=237 Identities=17% Similarity=0.292 Sum_probs=149.9
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 002753 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (884)
Q Consensus 256 h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~ 335 (884)
+..+.|+.||+-|.+||+|+.||.|.+||+.+ .+.-+.+.+ |..+|++++||+||+.|.+++.|..+++||
T Consensus 23 ~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsa--------H~~pi~sl~WS~dgr~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 23 NPLAECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSA--------HVRPITSLCWSRDGRKLLTSSRDWSIKLWD 93 (405)
T ss_pred CCccceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhhc--------cccceeEEEecCCCCEeeeecCCceeEEEe
Confidence 44588899999999999999999999999998 666677777 999999999999999999999999999999
Q ss_pred ccCCeeEEEeccccccceeeeeecCCCCCCccceee----cceeEEEecCCceEEEEecCCcceE----EEEee-cceee
Q 002753 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS----GTSMMQWDEYGYRLYAIEEGSSERV----LIFSF-GKCCL 406 (884)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~s----g~~i~~W~~~~~~l~~~~~~~~~~v----~~~~~-~~~~~ 406 (884)
+..|.+...++- .+.|....|+|.... ..+++ ...+...+.....++..-...+... ..|.. |+++.
T Consensus 94 l~~gs~l~rirf--~spv~~~q~hp~k~n--~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 94 LLKGSPLKRIRF--DSPVWGAQWHPRKRN--KCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred ccCCCceeEEEc--cCccceeeeccccCC--eEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE
Confidence 999988888876 467888888876521 11111 1123333322222221111111111 11223 55666
Q ss_pred cccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccC-CCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002753 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 407 s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~-~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~ 484 (884)
+|...|.+.+.+..+. ++...+.-. ...|.++-++..|+++++-+.|.++ .|++..-.
T Consensus 170 tGtsKGkllv~~a~t~--------------------e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETL--------------------ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred EecCcceEEEEecchh--------------------eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 5554444333322111 112222222 2468999999999999999999999 99986311
Q ss_pred EE-EecCccceeeeE--EEEEEEe-----CC--EEEEEEEecCCCeEEEEEeeCC
Q 002753 485 WR-VFGDITQEQKIQ--SKGLLWL-----GK--IIVVCNYIDSSNTYELLFYPRY 529 (884)
Q Consensus 485 w~-~f~~~~~e~~~~--v~~~~W~-----~~--~lv~~~~~~~~~~~elr~y~~~ 529 (884)
-. .-+..+.++.+. |....|. ++ +++++ . .+.+.|.+|.+.
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~--s--~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG--S--ARAHALYIWEKS 280 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec--c--ccceeEEEEecC
Confidence 00 001112122222 3344553 33 44443 2 677899999884
No 121
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.68 E-value=1.5e-15 Score=146.56 Aligned_cols=184 Identities=13% Similarity=0.247 Sum_probs=151.0
Q ss_pred EEEEcCCcEEEEeecCCccceeeecccc----cccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeec
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID----KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~----~~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~ 298 (884)
++|+.|.+.+++++.+.-+++++...++ ...+|...+. +-|....+.|.+.+.|++||+||..+ +..++++..
T Consensus 106 ~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT-gt~v~sL~~- 183 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT-GTEVQSLEF- 183 (334)
T ss_pred EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc-CcEEEEEec-
Confidence 4468899999999999888888877643 2378999998 88888778888889999999999998 777887775
Q ss_pred cCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---ee
Q 002753 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (884)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i 375 (884)
..+|+++..++||++|.++.. ++|++||...-.++.+... ...|.+...+|+. +.++.|. .+
T Consensus 184 --------~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs~k~--P~nV~SASL~P~k----~~fVaGged~~~ 248 (334)
T KOG0278|consen 184 --------NSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKSYKM--PCNVESASLHPKK----EFFVAGGEDFKV 248 (334)
T ss_pred --------CCCCcceeeccCCCEEEEecC-ceeEEeccccccceeeccC--ccccccccccCCC----ceEEecCcceEE
Confidence 567999999999999999887 8999999988877777655 3468888888886 6676665 67
Q ss_pred EEEecCCceEEEE-ecCCcceEEEEee---cceeecccCCCCceeeeeeecCC
Q 002753 376 MQWDEYGYRLYAI-EEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGED 424 (884)
Q Consensus 376 ~~W~~~~~~l~~~-~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~ 424 (884)
..+|..+++-+.. .++|.+.|.+++| |...++||.||++++|...-++.
T Consensus 249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 7788888877766 4899999966655 88999999999999999765544
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.67 E-value=2.5e-15 Score=163.97 Aligned_cols=213 Identities=14% Similarity=0.181 Sum_probs=172.8
Q ss_pred cCCcEEEEeecCCccceeeecccccc-----cCCCCcEE--EEEcC-CCCEEEEEecCCeEEEEEccCCCcceEEEeecc
Q 002753 228 SNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC--ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (884)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~~~-----~~h~~~v~--va~sp-~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~ 299 (884)
.++..++.++.|+++++|.-...+.. .+|...+. +++-+ ++-.+.+|+.|++|.+|.... ..+..++++
T Consensus 23 ~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~-~~P~~~Lkg-- 99 (745)
T KOG0301|consen 23 TDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ-AEPLYTLKG-- 99 (745)
T ss_pred cCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-CCchhhhhc--
Confidence 44556777888999999986543222 23444332 44443 555689999999999999988 788889999
Q ss_pred CCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeE
Q 002753 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~ 376 (884)
|...|.|++-..++. +++|+.|.++++|-.. ++..++.+| ..+|.+++.-|.+ .+++|+ +++
T Consensus 100 ------H~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH-~asVWAv~~l~e~-----~~vTgsaDKtIk 164 (745)
T KOG0301|consen 100 ------HKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGH-TASVWAVASLPEN-----TYVTGSADKTIK 164 (745)
T ss_pred ------cccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCc-chheeeeeecCCC-----cEEeccCcceee
Confidence 999999999888998 9999999999999764 466778888 8899999988874 666776 899
Q ss_pred EEecCCceEEEEecCCcceEEEEee--cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCc
Q 002753 377 QWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (884)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~ 454 (884)
+|.. ++++.++.+|.+.|..+.. ...++|++.|+.++.|++ .|+. ..++.+|..-
T Consensus 165 lWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~--------------------l~~~~ghtn~ 221 (745)
T KOG0301|consen 165 LWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV--------------------LLEMHGHTNF 221 (745)
T ss_pred eccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCce--------------------eeeeeccceE
Confidence 9984 7888999999999966666 558899999999999997 3332 4578899999
Q ss_pred eEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002753 455 VQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (884)
Q Consensus 455 I~~va~S~dG~~lavag~dg~i-iwd~~ 481 (884)
|.+++..+++..++++|.|+++ +|+..
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEeecC
Confidence 9999999999999999999999 99875
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.67 E-value=1.2e-15 Score=160.07 Aligned_cols=264 Identities=13% Similarity=0.118 Sum_probs=190.3
Q ss_pred EEEEecCeEEEEEccCeEEEEecCCcee--EEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCce
Q 002753 25 IYFKVNNGLLLIASPCHIELWSSSQHKV--RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (884)
Q Consensus 25 v~fspdg~lla~~t~~~v~IW~~~~~~~--~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~ 102 (884)
+.+|...+.+-+++.+.|+|||+.+|.. +++. ..++....-+.++...|||+.|.++....+|-|||+......
T Consensus 425 vtIS~~trhVyTgGkgcVKVWdis~pg~k~Pvsq----Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr 500 (705)
T KOG0639|consen 425 VTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQ----LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR 500 (705)
T ss_pred EEecCCcceeEecCCCeEEEeeccCCCCCCcccc----ccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc
Confidence 4577888899999999999999975532 1221 122333345578999999999999999999999999865543
Q ss_pred eecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceee
Q 002753 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (884)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~ 182 (884)
+...- ...+..--..++++|.+-.+.+..+|.|.+|+...+...
T Consensus 501 ikael-------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V----------------- 544 (705)
T KOG0639|consen 501 IKAEL-------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV----------------- 544 (705)
T ss_pred hhhhc-------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee-----------------
Confidence 21110 000011112245566677778889999998665443321
Q ss_pred cccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccccCCC--CcE
Q 002753 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG--DAV 260 (884)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~~h~--~~v 260 (884)
..+.++...+.+|+ ++.||.-+-++.-|.+++-||...++++..|. ..+
T Consensus 545 -------------------rqfqGhtDGascId----------is~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 545 -------------------RQFQGHTDGASCID----------ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred -------------------ecccCCCCCceeEE----------ecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 11334444455555 68999999999999999999999988776654 233
Q ss_pred -EEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 002753 261 -CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (884)
Q Consensus 261 -~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~ 339 (884)
.+..+|++.++|+|.+++.+.|-.... .....+.. |..-|.+++|++.|+++++.+.|+-+..|.+.-|
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~sk--p~kyqlhl--------heScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSK--PEKYQLHL--------HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCC--ccceeecc--------cccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 388899999999999999998866543 44556666 8899999999999999999999999999998655
Q ss_pred eeEEEeccccccceeeeeecCCCCCCccceeecc
Q 002753 340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (884)
Q Consensus 340 ~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~ 373 (884)
.-+...++ .++|.++.+|.++ .++++|+
T Consensus 666 asiFqskE--~SsVlsCDIS~dd----kyIVTGS 693 (705)
T KOG0639|consen 666 ASIFQSKE--SSSVLSCDISFDD----KYIVTGS 693 (705)
T ss_pred cceeeccc--cCcceeeeeccCc----eEEEecC
Confidence 44444443 5678888888887 6676665
No 124
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=1e-13 Score=149.21 Aligned_cols=236 Identities=20% Similarity=0.286 Sum_probs=157.3
Q ss_pred CCCEEEE--EecCCeEEEEEccCCCcceE-EEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeE
Q 002753 267 EQQILAV--GTRRGVVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLM 342 (884)
Q Consensus 267 ~~~~la~--g~~dg~v~lw~~~~~~~~~~-~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~~~l~ 342 (884)
+...+|+ .+..|.|.||+++..+++.- .+.+.. ....|+++.|.| |...||++++||.|++|.+..+-+-
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~ 663 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF------NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP 663 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccc------cCceeeecccCCCChHHeeecccCceEEEEEeccCCCC
Confidence 4555664 45568999999988554322 111110 245699999999 8899999999999999998654311
Q ss_pred EEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEee----cceeecccCCCCceeee
Q 002753 343 STIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQ 418 (884)
Q Consensus 343 ~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~ 418 (884)
. ... ..-..+..|.++|+.++| +..++++++|.++++||
T Consensus 664 e------------------------~~~-------------tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 664 E------------------------NEM-------------TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred c------------------------ccC-------------CcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 0 000 001122356677766666 67888999999999999
Q ss_pred eeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeee
Q 002753 419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKI 497 (884)
Q Consensus 419 l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~ 497 (884)
+.++.. -..+.+|.+.|..+||||||+.+|+.++||.+ +|+..++.-... |...
T Consensus 707 l~~~~~--------------------~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-----Eg~g 761 (1012)
T KOG1445|consen 707 LANAKL--------------------YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-----EGKG 761 (1012)
T ss_pred hhhhhh--------------------hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-----cCCC
Confidence 988877 34688999999999999999999999999999 999998764443 2222
Q ss_pred EE--E--EEEEe--CCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEEecCCc--cEEEEccCCE-EEEEEcCCeEEEE
Q 002753 498 QS--K--GLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAK--PIVMDVYEDY-ILVTYRPFDVHIF 568 (884)
Q Consensus 498 ~v--~--~~~W~--~~~lv~~~~~~~~~~~elr~y~~~~l~~~~~l~~~~~~~~--~~~~~~~~~~-llv~~~~~~i~i~ 568 (884)
.| + .+.|. +.++|+.+ .+.....++.+|+.+.++...+ .+..+... +++-....|+ +|..+..|+-.||
T Consensus 762 pvgtRgARi~wacdgr~viv~G-fdk~SeRQv~~Y~Aq~l~~~pl-~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~ 839 (1012)
T KOG1445|consen 762 PVGTRGARILWACDGRIVIVVG-FDKSSERQVQMYDAQTLDLRPL-YTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVN 839 (1012)
T ss_pred CccCcceeEEEEecCcEEEEec-ccccchhhhhhhhhhhccCCcc-eeeeecccCccccccccCCCceEEEecCCCceEE
Confidence 22 2 36774 45555433 4556778999999876664432 33333322 3332333333 3334666776666
Q ss_pred EEEE
Q 002753 569 HVKL 572 (884)
Q Consensus 569 ~~~~ 572 (884)
-+++
T Consensus 840 ~yEv 843 (1012)
T KOG1445|consen 840 MYEV 843 (1012)
T ss_pred EEEe
Confidence 6654
No 125
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.67 E-value=9.8e-16 Score=155.27 Aligned_cols=249 Identities=17% Similarity=0.174 Sum_probs=177.3
Q ss_pred cCCCCcEE-EEEcCCC-CEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcE
Q 002753 254 LGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~-~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v 331 (884)
.||.+.|. +|=+|.. ..+|+|+.||.|++||+.. ..+..+++. |.|.|+.+++.. ..++++++|++|
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~A--------H~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTFKA--------HEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhh-hhhhheeec--------ccCceeeEEecc--cceEEecCCcce
Confidence 57888886 8989976 8999999999999999988 778889998 999999999987 678888999999
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc-eeEEEecCCceEEEEecCCcceEEEEee----cceee
Q 002753 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCL 406 (884)
Q Consensus 332 ~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~ 406 (884)
+.|.+.+. ...++-+ .+.+..+.-+..+ ..+++++ .+-+||..-...+....-..+.|..+++ ...++
T Consensus 132 K~wk~~~~-p~~tilg--~s~~~gIdh~~~~----~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTILG--KSVYLGIDHHRKN----SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred eeeeccCC-cceeeec--ccccccccccccc----ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 99999885 5555544 2333333222222 4455555 7889998776666655544566655444 44566
Q ss_pred cccCCCCceeeeeeecCCeEEEEecCCCCceeE---------------------EEeecc-cccccCCCceEEEEEccCC
Q 002753 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI---------------------LHLNLP-VSYISQNWPVQHVAASKDG 464 (884)
Q Consensus 407 s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w---------------------~~~~~p-~~~~~~~~~I~~va~S~dG 464 (884)
++..|+++.++|+.++..---+....-++...| ..++-| ..+.+|...|.+|.|||.|
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred eeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc
Confidence 777999999999877653222222222222222 122223 4678999999999999999
Q ss_pred CEEEEEeCCceE-EEEccCCcEEEecCccceeeeE-EEEEEEeC--CEEEEEEEecCCCeEEEEEeeC
Q 002753 465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-SKGLLWLG--KIIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 465 ~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~-v~~~~W~~--~~lv~~~~~~~~~~~elr~y~~ 528 (884)
+-+++||-|.+| ||.++.+.-+ +..+..-|+ |.++.|.. .++++| +++..+|+|..
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SR---diYhtkRMq~V~~Vk~S~Dskyi~SG-----Sdd~nvRlWka 344 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSR---DIYHTKRMQHVFCVKYSMDSKYIISG-----SDDGNVRLWKA 344 (433)
T ss_pred chhccccccceEEEeecCCCcch---hhhhHhhhheeeEEEEeccccEEEec-----CCCcceeeeec
Confidence 999999999999 9999877532 222333344 88899964 456655 45577899975
No 126
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.2e-14 Score=161.51 Aligned_cols=264 Identities=14% Similarity=0.166 Sum_probs=177.1
Q ss_pred ceEEEEEecCeEEEEE-ccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 002753 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (884)
Q Consensus 22 ~~vv~fspdg~lla~~-t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~ 100 (884)
-.-|++-|+|+++.++ +++.|++|+...+ ...++++...|. ...+...++..|++++.++++.+|......
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd-------~e~P~ti~~~g~-~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSD-------EEEPETIDISGE-LVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCc-------ccCCchhhccCc-eeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 3447899999998888 5778999988522 123444543443 345566778899999999999999986443
Q ss_pred ceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccce
Q 002753 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (884)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~ 180 (884)
.... +. .+ . +. ..+.++..+++.++.|++|-.|.++.-++....
T Consensus 88 ~~~i----------L~----Rf--t--lp---~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--------------- 131 (933)
T KOG1274|consen 88 EDTI----------LA----RF--T--LP---IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--------------- 131 (933)
T ss_pred ccce----------ee----ee--e--cc---ceEEEEecCCcEEEeecCceeEEEEeccccchh---------------
Confidence 2110 11 01 1 11 124566677888899998888888766544322
Q ss_pred eecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccc-eeeecccccccCCCCc
Q 002753 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKELGSGDA 259 (884)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~-~w~~~~~~~~~~h~~~ 259 (884)
..+.+++.+|.++.|+|.++.+++.+.||++.+....++.+. .|.......-......
T Consensus 132 ---------------------~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i 190 (933)
T KOG1274|consen 132 ---------------------KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI 190 (933)
T ss_pred ---------------------eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccce
Confidence 224577888999998776666666666666666555554432 2222211110111233
Q ss_pred EE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 002753 260 VC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (884)
Q Consensus 260 v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~ 338 (884)
.+ ++|+|++..+|.-+.|++|++|+... .+....+..+. +...+.+++|||+|++||++..||.|.|||+.+
T Consensus 191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~------~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKL------SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeeeeecCCCCeEEeeccCCeEEEEccCC-ceeheeecccc------cccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 44 89999988888889999999999987 66666666543 334499999999999999999999999999986
Q ss_pred CeeEEEeccccccceeeeeecCCC
Q 002753 339 CRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 339 ~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
... ... ...|.+.+|.|+.
T Consensus 264 ~~~----~~~-~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 264 HER----HEF-KRAVCCEAWKPNA 282 (933)
T ss_pred chh----ccc-cceeEEEecCCCC
Confidence 211 111 3467777777775
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.1e-16 Score=175.11 Aligned_cols=215 Identities=16% Similarity=0.189 Sum_probs=180.7
Q ss_pred EcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCC
Q 002753 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (884)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~ 302 (884)
-..++.+++|..+..+.+|....+... .+|+..+. +.|+++..+||.|+.+|+|++||+.. .+.++++.+
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtg----- 110 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTG----- 110 (825)
T ss_pred eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhc-----
Confidence 466788888888877778877665443 68998887 99999999999999999999999998 888899988
Q ss_pred CCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEe
Q 002753 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (884)
Q Consensus 303 ~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~ 379 (884)
|...+.++.|+|-|.+.|+|+.|+.+++||....-|..+..+| ...|..++|+|+| ..+++|. ++.+||
T Consensus 111 ---h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP~G----r~v~~g~ed~tvki~d 182 (825)
T KOG0267|consen 111 ---HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSPDG----RWVASGGEDNTVKIWD 182 (825)
T ss_pred ---cccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecCCC----ceeeccCCcceeeeec
Confidence 9999999999999999999999999999999877788888886 7889999999999 8888876 899999
Q ss_pred cCCceEEEEecCCcceEEEEee--cc-eeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceE
Q 002753 380 EYGYRLYAIEEGSSERVLIFSF--GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (884)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~--~~-~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~ 456 (884)
...+++...+.+|.+++..+.+ .+ .+++|+.|.++++|++..-.- ..........|+
T Consensus 183 ~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~--------------------I~s~~~~~~~v~ 242 (825)
T KOG0267|consen 183 LTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV--------------------ISSGKPETDGVR 242 (825)
T ss_pred ccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE--------------------eeccCCccCCce
Confidence 9999999999989999866666 33 557899999999999753111 111222356799
Q ss_pred EEEEccCCCEEEEEeCCce
Q 002753 457 HVAASKDGMFLAVAGLHGL 475 (884)
Q Consensus 457 ~va~S~dG~~lavag~dg~ 475 (884)
+.+|+|||+.+++|-...+
T Consensus 243 ~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 243 SLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred eeeecCCceeeecCchhhh
Confidence 9999999999999876653
No 128
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=3.4e-15 Score=148.33 Aligned_cols=198 Identities=11% Similarity=0.124 Sum_probs=158.0
Q ss_pred ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcE
Q 002753 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (884)
Q Consensus 253 ~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v 331 (884)
+.||.+.+. ++.......+++++.|.+-+||.+++ +.++.+..+ |.|.|++++|++.|.++++++.|++-
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~G--------H~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTG--------HTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecc--------cccceeeEEeccccceEEEccCCcch
Confidence 368999998 88777778999999999999999999 899999998 99999999999999999999999999
Q ss_pred EEEec------cCC----------------------------------eeEEEeccccccceeeeeecCCCCCCccceee
Q 002753 332 TVWSV------SGC----------------------------------RLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (884)
Q Consensus 332 ~vW~~------~~~----------------------------------~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~s 371 (884)
.||.. ..+ ..++.+.+| ...|.+..|-..+ +.+++
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH-~~vV~a~dWL~gg----~Q~vT 289 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH-RAVVSACDWLAGG----QQMVT 289 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc-ccceEehhhhcCc----ceeee
Confidence 99972 110 012333343 3444444444444 55666
Q ss_pred cc---eeEEEecCCceEEEEecCCcceEEEEe--e-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecc
Q 002753 372 GT---SMMQWDEYGYRLYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (884)
Q Consensus 372 g~---~i~~W~~~~~~l~~~~~~~~~~v~~~~--~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p 445 (884)
++ +..+||.++++++..+.||+..+.-.+ + .+.+++.+.|.+.++|++...-.. .
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s-------------------V 350 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS-------------------V 350 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcce-------------------e
Confidence 66 788999999999999999998884433 3 778889999999999998754332 3
Q ss_pred cccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002753 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 446 ~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~ 484 (884)
..+.||...|+++.|..| ..+++|+.|.++ +||+..-+
T Consensus 351 ~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 351 AVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred eeecccccceeEEEEecC-CceeecCCCceEEEeeecccc
Confidence 467799999999999965 468899999999 99997655
No 129
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=3.2e-14 Score=141.32 Aligned_cols=240 Identities=14% Similarity=0.151 Sum_probs=150.8
Q ss_pred EEc-CCcEEEEeecCCccceeeeccccc-----ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeec
Q 002753 226 LYS-NGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (884)
Q Consensus 226 ~s~-dG~~~~~~~~d~~i~~w~~~~~~~-----~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~ 298 (884)
|+| ...+++.++-|+++++|+...... ...|..++- ++|+.||..+++|+.|+.+++||+.+ + ....+..
T Consensus 35 FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S-~-Q~~~v~~- 111 (347)
T KOG0647|consen 35 FSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS-G-QVSQVAA- 111 (347)
T ss_pred eccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-C-Ceeeeee-
Confidence 344 344566778899999999876322 145777765 99999999999999999999999998 4 5556666
Q ss_pred cCCCCCCCCcCeEEEEECCCCC--EEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce--eecc-
Q 002753 299 DWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL--MSGT- 373 (884)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~--~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l--~sg~- 373 (884)
|.++|.++.|-+... +|++|+.|++++.||......+.++.-. +.+.+... .+..+ +.+.
T Consensus 112 -------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~Dv------~~pm~vVata~r 176 (347)
T KOG0647|consen 112 -------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAADV------LYPMAVVATAER 176 (347)
T ss_pred -------cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeehhc------cCceeEEEecCC
Confidence 999999999988766 9999999999999999988888877542 22333221 11111 1222
Q ss_pred eeEEEecCCceEEEEecCC-----cceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccc-
Q 002753 374 SMMQWDEYGYRLYAIEEGS-----SERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS- 447 (884)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~-----~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~- 447 (884)
.+.++++++.......... ...|..|.-.+-.+-|+..|.+-+..+..+.. ...-.+++.+.
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~------------~~nFtFkCHR~~ 244 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP------------KDNFTFKCHRST 244 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc------------cCceeEEEeccC
Confidence 6667776543321111000 01122222233334455555544444333211 01111122211
Q ss_pred --cccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceee
Q 002753 448 --YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQK 496 (884)
Q Consensus 448 --~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~ 496 (884)
..+.-.+|++++|.|.-..||++|.||+. .||-+.+. |++..+.+.+.
T Consensus 245 ~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~-kLk~s~~~~qp 295 (347)
T KOG0647|consen 245 NSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART-KLKTSETHPQP 295 (347)
T ss_pred CCCCCceEEecceEeecccceEEEecCCceEEEecchhhh-hhhccCcCCCc
Confidence 11112468999999999999999999999 99987643 55554444443
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.2e-14 Score=150.34 Aligned_cols=228 Identities=16% Similarity=0.219 Sum_probs=163.4
Q ss_pred cCCccceeeeccccccc----CCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEE
Q 002753 238 SKKGLKLAEFIKIDKEL----GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (884)
Q Consensus 238 ~d~~i~~w~~~~~~~~~----~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l 313 (884)
....+.+|...+..... -.....|++-+|.|.+++.|+..|.+++|.+.+ +.++..+.. |-.+|+|+
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~a--------HYQ~ITcL 129 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSA--------HYQSITCL 129 (476)
T ss_pred cCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHh--------hccceeEE
Confidence 34445677765543221 112233588899999999999999999999999 888888877 99999999
Q ss_pred EECCCCCEEEEEEcCCcEEEEecc---------CCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecC
Q 002753 314 AWTPDNSAFAVGWKSRGLTVWSVS---------GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (884)
Q Consensus 314 ~~spdg~~Lasg~~dg~v~vW~~~---------~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~ 381 (884)
.|+-||.+|++|+.||.|.+|++. .-..++.+.+| .-+|+.+...+.+ + ...+.+.+ ++++|+..
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-tlsITDl~ig~Gg-~-~~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-TLSITDLQIGSGG-T-NARLYTASEDRTIKLWDLS 206 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC-cceeEEEEecCCC-c-cceEEEecCCceEEEEEec
Confidence 999999999999999999999873 23456777777 6678888876654 1 24555555 89999999
Q ss_pred CceEEEEecCCcceE--EEEee-cceeecccCCCCceeeeeeecCC-eE-EEEecCCCCceeEEEeecccccccCCC--c
Q 002753 382 GYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGED-RL-LVVQSEDTDELKILHLNLPVSYISQNW--P 454 (884)
Q Consensus 382 ~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~l~~~~~-~~-~i~~~~~~~~~~w~~~~~p~~~~~~~~--~ 454 (884)
.+.++....- +..+ ..+++ .+.+..|+.+|.+.+-.+.+... +. ...++.+. +.. -...+.||.+ +
T Consensus 207 ~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~-----~~t-~~~~~~Gh~~~~~ 279 (476)
T KOG0646|consen 207 LGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE-----ENT-QINVLVGHENESA 279 (476)
T ss_pred cceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc-----ccc-eeeeeccccCCcc
Confidence 9988876532 3333 66777 56667788888776554433221 00 00000000 000 1235678887 9
Q ss_pred eEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002753 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 455 I~~va~S~dG~~lavag~dg~i-iwd~~s~~ 484 (884)
|+|+++|-||..|++|+.||.+ +||+.+++
T Consensus 280 ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 280 ITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred eeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 9999999999999999999999 99998865
No 131
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.63 E-value=1.4e-14 Score=151.74 Aligned_cols=270 Identities=17% Similarity=0.135 Sum_probs=170.8
Q ss_pred hhhccceeEEEEcCCc-cEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeec-
Q 002753 64 VQREGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD- 141 (884)
Q Consensus 64 l~~~G~~~~v~wsPDg-~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~- 141 (884)
+.+.|++..+..-|.. ..+|+.|..+.+.|||...........+.-.+.+.+ ..... .+.-.+....
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L-----~gH~~------eg~glsWn~~~ 189 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRL-----KGHEK------EGYGLSWNRQQ 189 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEE-----Eeecc------ccccccccccc
Confidence 4456777777777755 467778889999999996443221111111111111 11100 0111122222
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcc
Q 002753 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (884)
Q Consensus 142 ~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (884)
...++.+..++.+..|+.+........ + .....+..+...|.+++|++.-
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~----------~-------------------~p~~~~~~h~~~VeDV~~h~~h- 239 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKV----------V-------------------DPKTIFSGHEDVVEDVAWHPLH- 239 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCcc----------c-------------------cceEEeecCCcceehhhccccc-
Confidence 356788888999988655433221000 0 1113345677788888887643
Q ss_pred eEEEEEcCCcEEEEeecCCccceeeeccc--cc---ccCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEccCCCcceEE
Q 002753 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKI--DK---ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRT 294 (884)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~--~~---~~~h~~~v~-va~sp-~~~~la~g~~dg~v~lw~~~~~~~~~~~ 294 (884)
..++++.++|+.+.+||.... +. ..+|+..+. ++||| ++.+||+|+.|++|+|||+++-...+.+
T Consensus 240 --------~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~ 311 (422)
T KOG0264|consen 240 --------EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT 311 (422)
T ss_pred --------hhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee
Confidence 223333344444556776642 11 157888776 99999 5678999999999999999986677788
Q ss_pred EeeccCCCCCCCCcCeEEEEECCC-CCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 002753 295 VSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (884)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spd-g~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~ 373 (884)
+.+ |...|.+|.|||+ ...||+++.|+.+.|||+..-....+-.. .-+
T Consensus 312 ~e~--------H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed-----------a~d------------ 360 (422)
T KOG0264|consen 312 FEG--------HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED-----------AED------------ 360 (422)
T ss_pred ccC--------CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh-----------hcc------------
Confidence 888 9999999999996 56899999999999999864221111000 001
Q ss_pred eeEEEecCCceEEEEecCCcceEEEEee----cceeecccCCCCceeeeee
Q 002753 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVI 420 (884)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~l~ 420 (884)
+--+++.+..||...|..|++ .-.++|.+.|+.+++|...
T Consensus 361 -------gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 -------GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred -------CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 113556667788888877777 4477889999999999864
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.62 E-value=1.7e-14 Score=142.44 Aligned_cols=220 Identities=17% Similarity=0.225 Sum_probs=162.8
Q ss_pred CCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEccCCCc-----ceE-EEeeccCCCCCCCCcCeEEEEECC-CCCEEEEE
Q 002753 255 GSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESAS-----LIR-TVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVG 325 (884)
Q Consensus 255 ~h~~~v~-va~sp-~~~~la~g~~dg~v~lw~~~~~~~-----~~~-~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg 325 (884)
.|...+. +.+.+ .|+++.+|++||.|.|||++.... .+. ..-....+...+|.-.|.++.|-| |.-.+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4666666 77776 589999999999999999976221 111 111001122335888999999999 67788899
Q ss_pred EcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEEEEee-
Q 002753 326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF- 401 (884)
Q Consensus 326 ~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~- 401 (884)
+-|.+++|||+.+-+....+... +.|.+-+++|-. .+...++.|. ++++-|..++..-.++.||.+.|.++++
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me--~~VYshamSp~a-~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKME--GKVYSHAMSPMA-MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccceEEEeecccceeeEEeecC--ceeehhhcChhh-hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999988877776653 446665666652 2234555554 8999999999999999999999987777
Q ss_pred ---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecc--cccccCCCceEEEEEccCCCEEEEEeCCceE
Q 002753 402 ---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP--VSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (884)
Q Consensus 402 ---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p--~~~~~~~~~I~~va~S~dG~~lavag~dg~i 476 (884)
.-.+++|+.|+++++||+............+.. .+.| .+-..|++.|..+||+.||+++++.|.|..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-------k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-------KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccC-------ccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 236789999999999999876544333322211 1112 2345899999999999999999999999999
Q ss_pred -EEEccCCc
Q 002753 477 -LYDIRQKK 484 (884)
Q Consensus 477 -iwd~~s~~ 484 (884)
+|+..+|+
T Consensus 271 r~wn~~~G~ 279 (397)
T KOG4283|consen 271 RVWNMESGR 279 (397)
T ss_pred EEeecccCc
Confidence 99999886
No 133
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=8.1e-15 Score=153.58 Aligned_cols=236 Identities=15% Similarity=0.158 Sum_probs=163.1
Q ss_pred CCCceEEEEEecCeEEEEEc-cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEE
Q 002753 19 PSSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (884)
Q Consensus 19 ~~~~~vv~fspdg~lla~~t-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~ 97 (884)
|+....++-+|+|.+|++++ .+.++||.+. .+.++.... .+|..++++.|+-||.+|++++.||.|++|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWels-sG~LL~v~~------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELS-SGILLNVLS------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEec-cccHHHHHH------hhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 55666778889999998885 6789999995 766555432 467888999999999999999999999999985
Q ss_pred ecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCc
Q 002753 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (884)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~ 177 (884)
.-- +.+++. .-.-+ ..|
T Consensus 154 ~lv--------------------------------------~a~~~~-----~~~p~--~~f------------------ 170 (476)
T KOG0646|consen 154 DLV--------------------------------------SADNDH-----SVKPL--HIF------------------ 170 (476)
T ss_pred eec--------------------------------------ccccCC-----Cccce--eee------------------
Confidence 210 001110 00000 112
Q ss_pred cceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccccccc---
Q 002753 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL--- 254 (884)
Q Consensus 178 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~--- 254 (884)
.+|.-.|+++...... +++ .+++.+.|.++++|+...+..+.
T Consensus 171 ---------------------------~~HtlsITDl~ig~Gg-------~~~-rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 171 ---------------------------SDHTLSITDLQIGSGG-------TNA-RLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred ---------------------------ccCcceeEEEEecCCC-------ccc-eEEEecCCceEEEEEeccceeeEEEe
Confidence 2333345555532111 233 45677889999999988775542
Q ss_pred CCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCc-------ceEEEeeccCCCCCCCCc--CeEEEEECCCCCEEEEE
Q 002753 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS-------LIRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVG 325 (884)
Q Consensus 255 ~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~-------~~~~l~~~~~~~~~~h~~--~V~~l~~spdg~~Lasg 325 (884)
.-....++++.|-.+.+.+|+.+|.|.+.++..... ......+.+.....+|.+ +|+|++.|-||..|++|
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG 295 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSG 295 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEee
Confidence 122333589999999999999999999988754110 000111112223345888 99999999999999999
Q ss_pred EcCCcEEEEeccCCeeEEEeccccccceeeeeecC
Q 002753 326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (884)
Q Consensus 326 ~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~ 360 (884)
+.||.++|||+.+.++++++... .+.|+.+.+.|
T Consensus 296 d~dg~VcvWdi~S~Q~iRtl~~~-kgpVtnL~i~~ 329 (476)
T KOG0646|consen 296 DEDGKVCVWDIYSKQCIRTLQTS-KGPVTNLQINP 329 (476)
T ss_pred CCCCCEEEEecchHHHHHHHhhh-ccccceeEeec
Confidence 99999999999999999888743 56677766643
No 134
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.5e-14 Score=153.61 Aligned_cols=277 Identities=17% Similarity=0.196 Sum_probs=176.0
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCC--EEEEEEcCCc
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG 330 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~--~Lasg~~dg~ 330 (884)
.||++.+. +++.|.|.+||+|+.||+||||.+.+ +.+++++.. .+.|.||+|+|.+. .||++-.+.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~~---------d~~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQF---------DSEIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEee---------cceeEEEEecCCCCceeEEEEecCc-
Confidence 58999887 99999999999999999999999999 899998876 56899999999765 677776654
Q ss_pred EEEEec-cCCeeEEEeccccccceeeeeecCCCCCCccceeec-------ceeEEEecCC----ceEEEEecCCcceEEE
Q 002753 331 LTVWSV-SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-------TSMMQWDEYG----YRLYAIEEGSSERVLI 398 (884)
Q Consensus 331 v~vW~~-~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg-------~~i~~W~~~~----~~l~~~~~~~~~~v~~ 398 (884)
+.+-+. +|-++...... +.+.++ ..+..|.... ..-+.+.-.|...|.+
T Consensus 466 ~~ivnp~~G~~~e~~~t~-------------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTK-------------------ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ 526 (733)
T ss_pred eEEeCccccchhhhcchh-------------------hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence 555543 44222111000 111111 1567887652 1112223345667777
Q ss_pred Eee---cceeecccCCCCce---eeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeC
Q 002753 399 FSF---GKCCLNRGVSGMTY---ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (884)
Q Consensus 399 ~~~---~~~~~s~~~d~~~~---~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~ 472 (884)
+++ |.++++.+.++..+ ++.+.... .|.|. ....+.|.++.|.|...++.+|++
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~------------------sQ~PF--~kskG~vq~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRK------------------SQSPF--RKSKGLVQRVKFHPSKPYLFVATQ 586 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEeccccc------------------ccCch--hhcCCceeEEEecCCCceEEEEec
Confidence 777 88888887765433 22222211 12343 334467999999999999999999
Q ss_pred CceEEEEccCCcEEEecCccceeeeEEEEEEE--eCCEEEEEEEecCCCeEEEEEeeCC----CCCCcceEEEEecCCcc
Q 002753 473 HGLILYDIRQKKWRVFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRY----HLDQSSLLCRKSLLAKP 546 (884)
Q Consensus 473 dg~iiwd~~s~~w~~f~~~~~e~~~~v~~~~W--~~~~lv~~~~~~~~~~~elr~y~~~----~l~~~~~l~~~~~~~~~ 546 (884)
+.+.+||+..++. .....+....+..|+- .|+.+|++++...-.++.+.+-+++ +++...+.....++.-|
T Consensus 587 ~~vRiYdL~kqel---vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP 663 (733)
T KOG0650|consen 587 RSVRIYDLSKQEL---VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP 663 (733)
T ss_pred cceEEEehhHHHH---HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc
Confidence 9988999976431 0011122233444444 3699999977655555655554442 22222222222233333
Q ss_pred EEEEccCCEEEEEEcCCeEEEEEEEEecccCCCCCCceEEEEEEEEe
Q 002753 547 IVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELS 593 (884)
Q Consensus 547 ~~~~~~~~~llv~~~~~~i~i~~~~~~~~~~~~~~~~i~~~~~~~~~ 593 (884)
++ +.++.|++++||+-.++.++ ..+|.|.+.++...|
T Consensus 664 Lf--------as~sdDgtv~Vfhg~VY~Dl--~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 664 LF--------ASGSDDGTVIVFHGMVYNDL--LQNPLIVPLKRLRGH 700 (733)
T ss_pred ee--------eeecCCCcEEEEeeeeehhh--hcCCceEeeeeccCc
Confidence 33 33456789999999888876 678888887776655
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=7.6e-14 Score=145.93 Aligned_cols=274 Identities=15% Similarity=0.159 Sum_probs=179.4
Q ss_pred eeEEEE--eecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCcc
Q 002753 133 LSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSA 210 (884)
Q Consensus 133 ~~v~~i--~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 210 (884)
+.++++ .+...-++++.-||.++++..+++.+..
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-------------------------------------------- 249 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-------------------------------------------- 249 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChh--------------------------------------------
Confidence 345554 4556778888899999999888776442
Q ss_pred EEEEEEcCCcceEEEEEcCCc-EEEEeecCCccceeeecccccc-----cCCC-CcEE-EEEcCCCCEEEEEecCCeEEE
Q 002753 211 IIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE-----LGSG-DAVC-ASIAPEQQILAVGTRRGVVEL 282 (884)
Q Consensus 211 i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~i~~w~~~~~~~~-----~~h~-~~v~-va~sp~~~~la~g~~dg~v~l 282 (884)
|.+|-+.......+.|.|+|+ .+++++...-...||..+.+.. .++. ..+. ..+||++++||..+.+|.|.|
T Consensus 250 lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~l 329 (514)
T KOG2055|consen 250 LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHL 329 (514)
T ss_pred heeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEe
Confidence 222223222233355678888 6666666666678888765432 3444 3444 899999999999999999999
Q ss_pred EEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 002753 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 283 w~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
-...+ .+.+..++. .|.|..++|+.||+.|.+++.+|.|.+||+..+.++.++.+.|.-.-++++.++++
T Consensus 330 LhakT-~eli~s~Ki---------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng 399 (514)
T KOG2055|consen 330 LHAKT-KELITSFKI---------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG 399 (514)
T ss_pred ehhhh-hhhhheeee---------ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC
Confidence 88877 777877776 78899999999999999999999999999999999988877544445677788888
Q ss_pred CCCccceeecc---eeEEEecCCc------eEEEEecCCcceEEEEee---cceeecccC--CCCceeeeeeecCCeEEE
Q 002753 363 DCKYEPLMSGT---SMMQWDEYGY------RLYAIEEGSSERVLIFSF---GKCCLNRGV--SGMTYARQVIYGEDRLLV 428 (884)
Q Consensus 363 ~~~~~~l~sg~---~i~~W~~~~~------~l~~~~~~~~~~v~~~~~---~~~~~s~~~--d~~~~~w~l~~~~~~~~i 428 (884)
.++++|+ .+-+++.++. +.+.....-...|..+.| +..++-+|. ..++++-. -.... +
T Consensus 400 ----~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVH--vPS~T--V 471 (514)
T KOG2055|consen 400 ----SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVH--VPSCT--V 471 (514)
T ss_pred ----ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEe--cccee--e
Confidence 8999988 3444443221 111111111233433333 333333332 22222211 11110 0
Q ss_pred EecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002753 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (884)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~ 481 (884)
++ .| |.. -..-+.|+|++|||.|-++|+|..+|.+ +|.+.
T Consensus 472 Fs-------Nf-----P~~-n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 472 FS-------NF-----PTS-NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ec-------cC-----CCC-CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 00 01 211 1112348999999999999999999999 98763
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.62 E-value=3.5e-15 Score=151.33 Aligned_cols=273 Identities=10% Similarity=0.090 Sum_probs=184.3
Q ss_pred ceeEEEEcCCc-cEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEE
Q 002753 69 ENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL 147 (884)
Q Consensus 69 ~~~~v~wsPDg-~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv 147 (884)
.+.+++=.|.. ..+|+|+.||.|++|++..-... ..++.+.|.|..+..+.+.++.
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-----------------------~~f~AH~G~V~Gi~v~~~~~~t 124 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-----------------------RTFKAHEGLVRGICVTQTSFFT 124 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhhhhhh-----------------------heeecccCceeeEEecccceEE
Confidence 34566677776 68999999999999999743321 2234556667777777788888
Q ss_pred EecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEE
Q 002753 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (884)
Q Consensus 148 ~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s 227 (884)
+++|.++..|..++.....+. +.......-..+.++.+++. +..+.+|-...+.++.+|.|..+....+-++
T Consensus 125 vgdDKtvK~wk~~~~p~~til-----g~s~~~gIdh~~~~~~FaTc---Ge~i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDGPPLHTIL-----GKSVYLGIDHHRKNSVFATC---GEQIDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred ecCCcceeeeeccCCcceeee-----cccccccccccccccccccc---CceeeecccccCCccceeecCCCceeEEecC
Confidence 888999998776653211110 00000011011112222232 2345566667788888988877766666677
Q ss_pred cCCc-EEEEeecCCccceeeecccccccC--CCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCC
Q 002753 228 SNGQ-LMSCSVSKKGLKLAEFIKIDKELG--SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (884)
Q Consensus 228 ~dG~-~~~~~~~d~~i~~w~~~~~~~~~~--h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~ 303 (884)
|--. +++++..|+++-++|......+.. ..-.+. ++|||.+--+.+|.+|..+..||+..-...+....+
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d------ 270 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD------ 270 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc------
Confidence 6544 677777899999999887655411 122334 899998888899999999999999874455556666
Q ss_pred CCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEec
Q 002753 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (884)
Q Consensus 304 ~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~ 380 (884)
|...|.+++|||-|+-+++|+.|++|+|+.+..+.--..........|.++.||.|. .+++||+ ++++|..
T Consensus 271 --hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds----kyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 271 --HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS----KYIISGSDDGNVRLWKA 344 (433)
T ss_pred --cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc----cEEEecCCCcceeeeec
Confidence 999999999999999999999999999999977642221111112357777887776 7777776 6777765
Q ss_pred CCce
Q 002753 381 YGYR 384 (884)
Q Consensus 381 ~~~~ 384 (884)
...+
T Consensus 345 ~Ase 348 (433)
T KOG0268|consen 345 KASE 348 (433)
T ss_pred chhh
Confidence 5443
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.2e-15 Score=166.90 Aligned_cols=232 Identities=18% Similarity=0.239 Sum_probs=186.3
Q ss_pred CccceeeecccccccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCC
Q 002753 240 KGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD 318 (884)
Q Consensus 240 ~~i~~w~~~~~~~~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd 318 (884)
..+++|+.... ..|..++. ..+-..++.+++|+.|-.+-||.+.. ...+..+.+ |.++|.|+.|+++
T Consensus 14 t~Lr~~~~~~~---~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-p~~i~S~~~--------hespIeSl~f~~~ 81 (825)
T KOG0267|consen 14 TKLRVWDTREF---VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-PNAITSLTG--------HESPIESLTFDTS 81 (825)
T ss_pred eccccccchhh---hhhhhhhceeeeeccceeeccCCCceeeccccccC-Cchhheeec--------cCCcceeeecCcc
Confidence 34556765543 45666664 55555789999999999999999876 344445666 9999999999999
Q ss_pred CCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcce
Q 002753 319 NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER 395 (884)
Q Consensus 319 g~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~ 395 (884)
..+|++|..+|+|++||+..++.+.+|.+| ...+.++.|+|.+ ++.++|+ ...+||....-+.....+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vrtLtgh-~~~~~sv~f~P~~----~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVRTLTGH-LLNITSVDFHPYG----EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhhhhhcc-ccCcceeeeccce----EEeccccccccceehhhhccCceeeecCCcce
Confidence 999999999999999999999999999998 7889999999998 8888887 7889999877788888777665
Q ss_pred E--EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeC
Q 002753 396 V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (884)
Q Consensus 396 v--~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~ 472 (884)
+ ..|++ |+..++++.|.++++|++..|.- ...|.+|.+++.++.|.|..-.++.||.
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~--------------------~~ef~~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL--------------------SKEFKSHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeeccccccc--------------------ccccccccccccccccCchhhhhccCCC
Confidence 5 66666 88999999999999999887764 5678899999999999999999999999
Q ss_pred CceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEE
Q 002753 473 HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVV 511 (884)
Q Consensus 473 dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~ 511 (884)
|+++ +||+++- .+.+...+| -.-|++..+..+.-++
T Consensus 217 d~tv~f~dletf--e~I~s~~~~-~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 217 DRTVRFWDLETF--EVISSGKPE-TDGVRSLAFNPDGKIV 253 (825)
T ss_pred Cceeeeecccee--EEeeccCCc-cCCceeeeecCCceee
Confidence 9999 9999752 233333333 1336666666655544
No 138
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=9e-14 Score=138.89 Aligned_cols=239 Identities=15% Similarity=0.183 Sum_probs=153.0
Q ss_pred CccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc--cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEE
Q 002753 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYD 284 (884)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~ 284 (884)
...|.+|.| ++.+..+++++.|+++++++....... ..|..++. ++|.+ ...+++|+.||.|+.+|
T Consensus 13 ~d~IS~v~f----------~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 13 EDGISSVKF----------SPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYD 81 (323)
T ss_pred hhceeeEEE----------cCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEE
Confidence 445777776 455556666678888887776654332 45777776 88876 56789999999999999
Q ss_pred ccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCC
Q 002753 285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 364 (884)
Q Consensus 285 ~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~ 364 (884)
+.+ +....+.. |.++|+|+.+++--..+++|++|++|++||..+.....++... ..|.++...-+
T Consensus 82 ln~--~~~~~igt--------h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~--kkVy~~~v~g~--- 146 (323)
T KOG1036|consen 82 LNT--GNEDQIGT--------HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG--KKVYCMDVSGN--- 146 (323)
T ss_pred ecC--Ccceeecc--------CCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC--ceEEEEeccCC---
Confidence 987 33334455 9999999999998888999999999999999876555555442 35666554333
Q ss_pred Cccceeecc--eeEEEecCCceEEEEecCCc-----ceEEEEeecceeecccCCCCceeeeeeecC---CeEEEEecCCC
Q 002753 365 KYEPLMSGT--SMMQWDEYGYRLYAIEEGSS-----ERVLIFSFGKCCLNRGVSGMTYARQVIYGE---DRLLVVQSEDT 434 (884)
Q Consensus 365 ~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~-----~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~---~~~~i~~~~~~ 434 (884)
..++.+. .+..||.............. ..|..++-+.-.+.++-+|.+-+=.+...+ .+-+.+..+-
T Consensus 147 --~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr- 223 (323)
T KOG1036|consen 147 --RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR- 223 (323)
T ss_pred --EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee-
Confidence 3333222 88899988755443222211 112222224445566666665432222110 1111111110
Q ss_pred CceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002753 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 435 ~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~ 484 (884)
+ -..-..--.||++++|+|--..+|+||.||.+ +||..++|
T Consensus 224 --------~-~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 224 --------L-SEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred --------c-ccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh
Confidence 0 00000112489999999999999999999999 99998875
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=3.8e-13 Score=134.48 Aligned_cols=271 Identities=15% Similarity=0.140 Sum_probs=174.1
Q ss_pred cceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEe-ecCCeEE
Q 002753 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-SDNKHML 146 (884)
Q Consensus 68 G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~-~~~~~ll 146 (884)
..+.+|.|+|.+..|++++-||++++|++......+.+ + +..++.+++ .+...++
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-----------------------~-~~~plL~c~F~d~~~~~ 69 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-----------------------K-HGAPLLDCAFADESTIV 69 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-----------------------e-cCCceeeeeccCCceEE
Confidence 45678999999999999999999999999754221111 1 112233333 3456789
Q ss_pred EEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEE
Q 002753 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (884)
Q Consensus 147 v~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (884)
+|+-+|.|+.++.+..... .+..|...+.+|++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~-------------------------------------~igth~~~i~ci~~~--------- 103 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNED-------------------------------------QIGTHDEGIRCIEYS--------- 103 (323)
T ss_pred EeccCceEEEEEecCCcce-------------------------------------eeccCCCceEEEEee---------
Confidence 9999999999876643321 123466778888874
Q ss_pred EcCCcEEEEeecCCccceeeecccccc--cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCC
Q 002753 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (884)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~~--~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~ 304 (884)
+.-..+++++.|+++++||....... ....+.|. +.+-.+..|++|+.|..|.+||+++..... +.....
T Consensus 104 -~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy-~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~-q~reS~----- 175 (323)
T KOG1036|consen 104 -YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVY-CMDVSGNRLVVGTSDRKVLIYDLRNLDEPF-QRRESS----- 175 (323)
T ss_pred -ccCCeEEEcccCccEEEEeccccccccccccCceEE-EEeccCCEEEEeecCceEEEEEcccccchh-hhcccc-----
Confidence 33334667889999999998753222 22233343 233468899999999999999998732222 111111
Q ss_pred CCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee----EEEeccccccceeeeeecCCCCCCccceeecceeEEEec
Q 002753 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380 (884)
Q Consensus 305 ~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l----~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~ 380 (884)
-.-.++|++.-|++.-.|+++-||.|.+=.+..... ...++-|.. . .
T Consensus 176 -lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~-----------~-----------------~ 226 (323)
T KOG1036|consen 176 -LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL-----------S-----------------E 226 (323)
T ss_pred -ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeec-----------c-----------------c
Confidence 245689999999999999999999887755543311 111211100 0 0
Q ss_pred CCceEEEEecCCcceE--EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEE
Q 002753 381 YGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (884)
Q Consensus 381 ~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~ 457 (884)
++.+++. .| .+|.+ -+.++||+.||-+..|++...+. ...+......|.+
T Consensus 227 ~~~~~~y-------PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr--------------------l~q~~~~~~SI~s 279 (323)
T KOG1036|consen 227 KDTEIIY-------PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR--------------------LKQLAKYETSISS 279 (323)
T ss_pred CCceEEE-------EeceeEeccccceEEecCCCceEEEccCcchhh--------------------hhhccCCCCceEE
Confidence 0111100 22 33444 55689999999999999765433 2223333456999
Q ss_pred EEEccCCCEEEEEeC
Q 002753 458 VAASKDGMFLAVAGL 472 (884)
Q Consensus 458 va~S~dG~~lavag~ 472 (884)
++||.||..||+|+.
T Consensus 280 lsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 280 LSFSMDGSLLAIASS 294 (323)
T ss_pred EEeccCCCeEEEEec
Confidence 999999999999985
No 140
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=1.1e-14 Score=160.87 Aligned_cols=195 Identities=14% Similarity=0.213 Sum_probs=143.7
Q ss_pred EEEcC-CCCEEEEEecCCeEEEEEccCC--CcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEecc
Q 002753 262 ASIAP-EQQILAVGTRRGVVELYDLAES--ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 262 va~sp-~~~~la~g~~dg~v~lw~~~~~--~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~ 337 (884)
|.|+. +.++|||++.+|.|.+||+... .+.+..+.. |+..|.++.|++ .-++|++|+.||+|++||+.
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E--------H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR 164 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE--------HERSANKLDFHSTEPNILISGSQDGTVKCWDLR 164 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccchhhhHhhh--------hccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence 66663 5789999999999999999762 234445555 999999999998 57899999999999999998
Q ss_pred CCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCceee
Q 002753 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR 417 (884)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w 417 (884)
...-..++.+. ..+|..+.|+|.. +..++++...|.++.|
T Consensus 165 ~~~S~~t~~~n-SESiRDV~fsp~~---------------------------------------~~~F~s~~dsG~lqlW 204 (839)
T KOG0269|consen 165 SKKSKSTFRSN-SESIRDVKFSPGY---------------------------------------GNKFASIHDSGYLQLW 204 (839)
T ss_pred ccccccccccc-chhhhceeeccCC---------------------------------------CceEEEecCCceEEEe
Confidence 87666665553 3445555555432 2344667777888999
Q ss_pred eeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceee
Q 002753 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQK 496 (884)
Q Consensus 418 ~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~ 496 (884)
|+.+.+. .-.++.+|++||.|+.|+|++.+||+||+|+.+ +||+.+++-+... .-+.-
T Consensus 205 DlRqp~r-------------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~--tInTi 263 (839)
T KOG0269|consen 205 DLRQPDR-------------------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH--TINTI 263 (839)
T ss_pred eccCchh-------------------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee--EEeec
Confidence 9888665 235778999999999999999999999999999 9999987643221 11111
Q ss_pred eEEEEEEEeC---CEEEEEEEecCCCeEEEEEeeC
Q 002753 497 IQSKGLLWLG---KIIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 497 ~~v~~~~W~~---~~lv~~~~~~~~~~~elr~y~~ 528 (884)
..|..+.|-+ ..|.+|.. ..+.++++|+.
T Consensus 264 apv~rVkWRP~~~~hLAtcsm---v~dtsV~VWDv 295 (839)
T KOG0269|consen 264 APVGRVKWRPARSYHLATCSM---VVDTSVHVWDV 295 (839)
T ss_pred ceeeeeeeccCccchhhhhhc---cccceEEEEee
Confidence 2255789964 34444433 45688999985
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.59 E-value=1.6e-13 Score=137.78 Aligned_cols=220 Identities=12% Similarity=0.174 Sum_probs=153.1
Q ss_pred EEEEeecCCccceeeeccccc---ccCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCC
Q 002753 232 LMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (884)
Q Consensus 232 ~~~~~~~d~~i~~w~~~~~~~---~~~h~~~v~-va~sp~-~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h 306 (884)
++++++..|-|++.|..+.+. +.+|..++. +.+.|+ -+++.+|+.|.+||+|++++ ..++..+.+.. +|
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~-~~Cv~VfGG~e-----gH 180 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT-DVCVAVFGGVE-----GH 180 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC-CeEEEEecccc-----cc
Confidence 455566677788888776554 378999999 999996 47999999999999999998 78888776632 49
Q ss_pred CcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec---------------------------cccccceeeeeec
Q 002753 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR---------------------------QISLSSISSPIVK 359 (884)
Q Consensus 307 ~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~---------------------------~~~~~~v~s~~~s 359 (884)
.+.|.++.|++||.++|+++.|.++++|++...+....++ ..|.+.|.++.|-
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 9999999999999999999999999999997432111111 0012222222221
Q ss_pred CCCCCCccceeecc---eeEEEecCCce-E-------------EEEecCCcceEEE----Eee-cceeecccCCCCceee
Q 002753 360 PNQDCKYEPLMSGT---SMMQWDEYGYR-L-------------YAIEEGSSERVLI----FSF-GKCCLNRGVSGMTYAR 417 (884)
Q Consensus 360 ~~~~~~~~~l~sg~---~i~~W~~~~~~-l-------------~~~~~~~~~~v~~----~~~-~~~~~s~~~d~~~~~w 417 (884)
- +.++|.+ .+..|.++..+ - +....-....+|- +++ .+.++.|+..+.+.+|
T Consensus 261 g------d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 261 G------DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred h------hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 1 3344443 78899884321 1 1111111223433 333 7899999999999999
Q ss_pred eeeecCCeEEEEecCCCCceeEEEeecccccc--cCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002753 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYI--SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (884)
Q Consensus 418 ~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~--~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~ 481 (884)
++...+.. + ..++. .....|++.+||.||..|+..+.||++ -||..
T Consensus 335 dL~~~ep~-----------------~-~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 335 DLDNNEPP-----------------K-CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ECCCCCCc-----------------c-CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 98765541 0 11122 123579999999999999999999999 88854
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.57 E-value=2.3e-12 Score=139.34 Aligned_cols=224 Identities=13% Similarity=0.160 Sum_probs=148.6
Q ss_pred EEEEcCCcEE-EEeecCCccceeeecccccc---cCCCCcEEEEEcCCCCEEEE-EecCCeEEEEEccCCCcceEEEeec
Q 002753 224 FVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVSLY 298 (884)
Q Consensus 224 ~~~s~dG~~~-~~~~~d~~i~~w~~~~~~~~---~~h~~~v~va~sp~~~~la~-g~~dg~v~lw~~~~~~~~~~~l~~~ 298 (884)
+.+++||+.+ +++..++.+.+|+...++.. ..+.....++++|+++.+++ ++.|+++++||+.+ .+.+..+..
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~- 113 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV- 113 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC-
Confidence 3457888865 55566778888987665432 23344445899999987755 45689999999987 555554442
Q ss_pred cCCCCCCCCcCeEEEEECCCCCEEEEEEcCC-cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce-eec---c
Q 002753 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSG---T 373 (884)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg-~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l-~sg---~ 373 (884)
...+.+++|+|||..++++..++ .+.+|+..++.....+... ....+++|+|++ ..+ +++ .
T Consensus 114 --------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~ 179 (300)
T TIGR03866 114 --------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--QRPRFAEFTADG----KELWVSSEIGG 179 (300)
T ss_pred --------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--CCccEEEECCCC----CEEEEEcCCCC
Confidence 23467899999999999998875 4677899887766554332 235678899987 555 332 3
Q ss_pred eeEEEecCCceEEEEecCC-----cceE----EEEee-cce-eecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEe
Q 002753 374 SMMQWDEYGYRLYAIEEGS-----SERV----LIFSF-GKC-CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (884)
Q Consensus 374 ~i~~W~~~~~~l~~~~~~~-----~~~v----~~~~~-~~~-~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~ 442 (884)
.+.+|+..++++......+ ...+ ..+++ ++. +++.+.++.+.+|++..+...
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~----------------- 242 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL----------------- 242 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-----------------
Confidence 7899999988776544211 1111 33444 444 333444556777765432210
Q ss_pred ecccccccCCCceEEEEEccCCCEEEEE-eCCceE-EEEccCCc
Q 002753 443 NLPVSYISQNWPVQHVAASKDGMFLAVA-GLHGLI-LYDIRQKK 484 (884)
Q Consensus 443 ~~p~~~~~~~~~I~~va~S~dG~~lava-g~dg~i-iwd~~s~~ 484 (884)
....+...+.+++|+|+|++|+++ +.+|.+ +||+.+++
T Consensus 243 ----~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 243 ----DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred ----EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 111223468899999999999987 468889 99999876
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=4.5e-13 Score=140.22 Aligned_cols=277 Identities=14% Similarity=0.181 Sum_probs=179.9
Q ss_pred hccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeE
Q 002753 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (884)
Q Consensus 66 ~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l 145 (884)
.+|.+.+|.|.|..+.|.|+.-||.++||++....+.. +.++ .++. .++ ...+|++++...
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-----------lqS~--~l~~-fPi-----~~a~f~p~G~~~ 272 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-----------LQSI--HLEK-FPI-----QKAEFAPNGHSV 272 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-----------heee--eecc-Ccc-----ceeeecCCCceE
Confidence 36889999999999999999999999999997544321 1222 1111 111 124677777744
Q ss_pred EE-EecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCC-CccEEEEEEcCCcceE
Q 002753 146 LL-GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI-SSAIIWLELCLPMRLL 223 (884)
Q Consensus 146 lv-~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~ 223 (884)
++ ++....+ ++||-+......+. ...+. ...+..
T Consensus 273 i~~s~rrky~--ysyDle~ak~~k~~--------------------------------~~~g~e~~~~e~---------- 308 (514)
T KOG2055|consen 273 IFTSGRRKYL--YSYDLETAKVTKLK--------------------------------PPYGVEEKSMER---------- 308 (514)
T ss_pred EEecccceEE--EEeecccccccccc--------------------------------CCCCcccchhhe----------
Confidence 44 4444444 45665443222110 00111 111222
Q ss_pred EEEEcCCcEEEEeecCCccceeeecccccc--cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccC
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~ 300 (884)
..+++||+++++.+..+.|.+....+.+.+ ......+. +.|+.|++.|.+.+.+|.|.+||+.. ..+++.+..
T Consensus 309 FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~-~~~~~rf~D--- 384 (514)
T KOG2055|consen 309 FEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ-NSCLHRFVD--- 384 (514)
T ss_pred eEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCC-cceEEEEee---
Confidence 336889999998888888887666555433 12244556 89999999999889999999999998 677777764
Q ss_pred CCCCCCCcCe--EEEEECCCCCEEEEEEcCCcEEEEeccCC------eeEEEeccccccceeeeeecCCCCCCccceeec
Q 002753 301 GYSMDDTGPV--SCIAWTPDNSAFAVGWKSRGLTVWSVSGC------RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (884)
Q Consensus 301 ~~~~~h~~~V--~~l~~spdg~~Lasg~~dg~v~vW~~~~~------~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg 372 (884)
.|.| ++++-|++|.+||+|+..|-|.|||..+. +.+.++..- ...|+++.|+++. +.++-+
T Consensus 385 ------~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~----qiLAia 453 (514)
T KOG2055|consen 385 ------DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL-TTAITSLQFNHDA----QILAIA 453 (514)
T ss_pred ------cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh-heeeeeeeeCcch----hhhhhh
Confidence 4444 66888899999999999999999996543 233343333 4578999999997 665533
Q ss_pred c-----eeEEEecCCceEEEEecCCc---ceE--EEEee-cceeecccCCCCceeeeee
Q 002753 373 T-----SMMQWDEYGYRLYAIEEGSS---ERV--LIFSF-GKCCLNRGVSGMTYARQVI 420 (884)
Q Consensus 373 ~-----~i~~W~~~~~~l~~~~~~~~---~~v--~~~~~-~~~~~s~~~d~~~~~w~l~ 420 (884)
+ ..++-..-+...+.-+.... +.+ ++|++ +..++.|+.++.+.+|.+.
T Consensus 454 S~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 454 SRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 3 33444444444443333222 223 66677 7788999999999998764
No 144
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.8e-12 Score=129.58 Aligned_cols=151 Identities=13% Similarity=0.205 Sum_probs=111.0
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCC--
Q 002753 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-- 339 (884)
Q Consensus 262 va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~-- 339 (884)
..|.+.|++|.+|..-|.+.+|+..+ .+++..++.. ....|..+.++-.|++|+.-..|+.||+++...-
T Consensus 159 ~~fdr~g~yIitGtsKGkllv~~a~t-~e~vas~rit-------s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 159 GVFDRRGKYIITGTSKGKLLVYDAET-LECVASFRIT-------SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred ccccCCCCEEEEecCcceEEEEecch-heeeeeeeec-------hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcc
Confidence 46889999999999999999999988 7777777661 2367999999999999999999999999998521
Q ss_pred -----ee--EEEeccc-cccceeeeeecCCCCCCccceeecc----eeEEEecCCceEEEEecCCcce-EEEE--eecce
Q 002753 340 -----RL--MSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSER-VLIF--SFGKC 404 (884)
Q Consensus 340 -----~l--~~tl~~~-~~~~v~s~~~s~~~~~~~~~l~sg~----~i~~W~~~~~~l~~~~~~~~~~-v~~~--~~~~~ 404 (884)
.+ .+.+.+- ..-.-..+.|+.+| +++..|+ ...+|....|.|+.++.|..+. +..+ .+.+.
T Consensus 231 ~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg----eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp 306 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG----EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP 306 (405)
T ss_pred cCccCCcChhHHHHHHHhhhhhhheeecCCc----cEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee
Confidence 11 1111110 01123456788888 7777666 7789999999999999887744 4444 44555
Q ss_pred eecccCCCCceeeeeeecCC
Q 002753 405 CLNRGVSGMTYARQVIYGED 424 (884)
Q Consensus 405 ~~s~~~d~~~~~w~l~~~~~ 424 (884)
++..-..|++++|...+-.+
T Consensus 307 ~i~si~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 307 IIASIASGVVYIWAVVQVEN 326 (405)
T ss_pred eeeeccCCceEEEEeecccc
Confidence 55555778899998766443
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=8.7e-13 Score=131.55 Aligned_cols=254 Identities=14% Similarity=0.117 Sum_probs=163.7
Q ss_pred CCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccc-------cccCCCCcEE-EEEcC-C-CCEEEEEec
Q 002753 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-------KELGSGDAVC-ASIAP-E-QQILAVGTR 276 (884)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~-------~~~~h~~~v~-va~sp-~-~~~la~g~~ 276 (884)
|+.-|.++.| ..-|+.+++++.|.++++|+..+.. .|..|...+. +.|.+ . |+.+|+++.
T Consensus 12 h~DlihdVs~----------D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 12 HKDLIHDVSF----------DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred Ccceeeeeee----------cccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence 3444666665 5668888888888888888854321 2367888776 77754 3 899999999
Q ss_pred CCeEEEEEccCC---C---cceE--EEeeccCCCCCCCCcCeEEEEECCC--CCEEEEEEcCCcEEEEeccCCeeEE---
Q 002753 277 RGVVELYDLAES---A---SLIR--TVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCRLMS--- 343 (884)
Q Consensus 277 dg~v~lw~~~~~---~---~~~~--~l~~~~~~~~~~h~~~V~~l~~spd--g~~Lasg~~dg~v~vW~~~~~~l~~--- 343 (884)
|++++||.-... . +-++ ++.. ..+.|++++|.|- |-.||+++.||.+|||+.....-+.
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D--------srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVD--------SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeec--------CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 999999986321 1 1111 2222 5678999999994 8899999999999999885433222
Q ss_pred ---Eec------cccccceeeeeecCCCCCCccceeecc--------eeEEEecCC-c-eEE--EEecCCcceEEEEee-
Q 002753 344 ---TIR------QISLSSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYG-Y-RLY--AIEEGSSERVLIFSF- 401 (884)
Q Consensus 344 ---tl~------~~~~~~v~s~~~s~~~~~~~~~l~sg~--------~i~~W~~~~-~-~l~--~~~~~~~~~v~~~~~- 401 (884)
.+. +.....-.++.++|.. .....++-|+ .+.+|.... + +.. ..+.+|...|.+++|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 111 1112334455665442 1113344333 456665432 2 222 234578888977666
Q ss_pred ---c---ceeecccCCCCceeeeeeecCCeEEEEecCCCCc-eeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCc
Q 002753 402 ---G---KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE-LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (884)
Q Consensus 402 ---~---~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~-~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg 474 (884)
| ..+++++.|| +++|.+......+ ...+...+. +.-..++....+.+|+++|+++.|+-.|..|+++|.||
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i-~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG 310 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAI-EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG 310 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEeeccchh-hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence 3 3678899999 9998876433222 000111111 11123344566889999999999999999999999999
Q ss_pred eE-EEEcc
Q 002753 475 LI-LYDIR 481 (884)
Q Consensus 475 ~i-iwd~~ 481 (884)
.+ +|..+
T Consensus 311 ~VRLWkan 318 (361)
T KOG2445|consen 311 CVRLWKAN 318 (361)
T ss_pred eeeehhhh
Confidence 99 99753
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.54 E-value=4e-13 Score=132.83 Aligned_cols=290 Identities=16% Similarity=0.185 Sum_probs=177.2
Q ss_pred eeEEEEeec---CCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCc
Q 002753 133 LSVSNIVSD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISS 209 (884)
Q Consensus 133 ~~v~~i~~~---~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 209 (884)
++|-++.-+ +.+++.|..||.+.+++.+....-+.. ...+.-.|+-. +..-..|+-
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s--~li~k~~c~v~-------------------~~h~~~Hky 102 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS--GLIAKHKCIVA-------------------KQHENGHKY 102 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhc--cceeheeeecc-------------------ccCCcccee
Confidence 445555443 467899999999998765433211110 00000001000 011134556
Q ss_pred cEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccccccc--CCCCcEE-EEEcC---CCCEEEEEecCCeEEEE
Q 002753 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL--GSGDAVC-ASIAP---EQQILAVGTRRGVVELY 283 (884)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~--~h~~~v~-va~sp---~~~~la~g~~dg~v~lw 283 (884)
.|.++.|.| -|--.+.+++-|.++|+||..+.+... .-++.|. -++|| ...+||+|..|-.|++.
T Consensus 103 ~iss~~WyP---------~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 103 AISSAIWYP---------IDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred eeeeeEEee---------ecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 666666643 344456667789999999998765431 1223344 56666 46799999999999999
Q ss_pred EccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCC-EEEEEEcCCcEEEEeccCC-eeEEEecccc------------
Q 002753 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGC-RLMSTIRQIS------------ 349 (884)
Q Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~dg~v~vW~~~~~-~l~~tl~~~~------------ 349 (884)
|+.. +...+++++ |.+.|.++.|||... .||+|+.||.+++||+... -++.++..|.
T Consensus 174 Di~S-Gs~sH~LsG--------Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a 244 (397)
T KOG4283|consen 174 DIAS-GSFSHTLSG--------HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA 244 (397)
T ss_pred eccC-Ccceeeecc--------ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccc
Confidence 9999 899999999 999999999999654 7899999999999999643 3455554442
Q ss_pred -ccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecC---CcceEEEEeecceeecccCCCCceeeeeeec
Q 002753 350 -LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG---SSERVLIFSFGKCCLNRGVSGMTYARQVIYG 422 (884)
Q Consensus 350 -~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~---~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~ 422 (884)
.+.|++++|+.++ ..+++.. .++.|+...++--....+ |..+. .+.+ .+. +.+..+. .+...
T Consensus 245 h~gkvngla~tSd~----~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-~~~~---~~~-~~~s~vf--v~~p~ 313 (397)
T KOG4283|consen 245 HYGKVNGLAWTSDA----RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-SFAV---HIQ-SMDSDVF--VLFPN 313 (397)
T ss_pred ccceeeeeeecccc----hhhhhccCccceEEeecccCcccccccccccccccc-cceE---EEe-ecccceE--EEEec
Confidence 3467778887777 5555443 788888766543221111 11111 0000 011 1111111 12222
Q ss_pred CCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002753 423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 423 ~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~ 480 (884)
++.+.++.-.+.+. ...+..|...|.|.++-|+=+...+|..||.+ .|.+
T Consensus 314 ~~~lall~~~sgs~--------ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 314 DGSLALLNLLEGSF--------VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CCeEEEEEccCceE--------EEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 23333333222111 23455676779999999999999999999999 8876
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.5e-12 Score=129.95 Aligned_cols=278 Identities=14% Similarity=0.162 Sum_probs=166.2
Q ss_pred cceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEee----cCC
Q 002753 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS----DNK 143 (884)
Q Consensus 68 G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~----~~~ 143 (884)
.-+.++.|.+-|+++|++++|++++||+...+...-.. .-..+.++++|..+.- -|+
T Consensus 14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~-------------------Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC-------------------TSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred ceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE-------------------eeeEEecCCcEEEEEecCccccc
Confidence 34578999999999999999999999997533321100 0001233344433321 245
Q ss_pred eEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcc--
Q 002753 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-- 221 (884)
Q Consensus 144 ~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-- 221 (884)
-+++++.|+++.+ |+.+..... ....+|+ ....+....+.|+++.|.|.-.
T Consensus 75 vvA~cS~Drtv~i--WEE~~~~~~--------~~~~~Wv-----------------~~ttl~DsrssV~DV~FaP~hlGL 127 (361)
T KOG2445|consen 75 VVATCSYDRTVSI--WEEQEKSEE--------AHGRRWV-----------------RRTTLVDSRSSVTDVKFAPKHLGL 127 (361)
T ss_pred eEEEEecCCceee--eeecccccc--------cccceeE-----------------EEEEeecCCcceeEEEecchhcce
Confidence 5677788999987 654321100 0001110 1133456778899999987532
Q ss_pred eEEEEEcCCcEEEEeecC-Cccceeeeccccc-c-----cCCCCcEEEEEcCC---CCEEEEEecC-----CeEEEEEcc
Q 002753 222 LLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDK-E-----LGSGDAVCASIAPE---QQILAVGTRR-----GVVELYDLA 286 (884)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d-~~i~~w~~~~~~~-~-----~~h~~~v~va~sp~---~~~la~g~~d-----g~v~lw~~~ 286 (884)
..++++.||-+-+--..+ ..++.|.....-. . ..+...-|++|||. ..+||+|+.+ +.+.||...
T Consensus 128 klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~ 207 (361)
T KOG2445|consen 128 KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN 207 (361)
T ss_pred EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec
Confidence 334444455433322211 1223333221100 0 13445667999984 5789999877 589999887
Q ss_pred CCCcc-eE--EEeeccCCCCCCCCcCeEEEEECCC----CCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 002753 287 ESASL-IR--TVSLYDWGYSMDDTGPVSCIAWTPD----NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (884)
Q Consensus 287 ~~~~~-~~--~l~~~~~~~~~~h~~~V~~l~~spd----g~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s 359 (884)
+.++. .+ ++. +|+.+|++++|.|+ -+.||+++.|| |+||.+...+.- +.. .++. .
T Consensus 208 e~~rKw~kva~L~--------d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~--i~~---ee~~----~ 269 (361)
T KOG2445|consen 208 ENGRKWLKVAELP--------DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSA--IEE---EEVL----A 269 (361)
T ss_pred CCcceeeeehhcC--------CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccch--hhh---hccc----C
Confidence 64422 22 233 49999999999995 35899999998 999999764311 111 1111 1
Q ss_pred CCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCC
Q 002753 360 PNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGED 424 (884)
Q Consensus 360 ~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~ 424 (884)
|+...+ -.-+++....+|.+.+|.+++ |..+.+.+.||.+++|...+.+.
T Consensus 270 ~~~~~~---------------l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~ 322 (361)
T KOG2445|consen 270 PDLMTD---------------LPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNL 322 (361)
T ss_pred CCCccc---------------cceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhh
Confidence 111000 011334456788999988888 88999999999999998766543
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.53 E-value=6.4e-12 Score=135.88 Aligned_cols=274 Identities=12% Similarity=0.113 Sum_probs=167.5
Q ss_pred cEEEEeecCCccceeeecccccc---cCCCCcEEEEEcCCCCEE-EEEecCCeEEEEEccCCCcceEEEeeccCCCCCCC
Q 002753 231 QLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (884)
Q Consensus 231 ~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~va~sp~~~~l-a~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h 306 (884)
+++++++.++.+.+|+..+++.. ..+.....++|+|+++.+ ++++.++.|++||..+ ++....+.. +
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~--------~ 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPS--------G 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccC--------C
Confidence 45666677777788876654432 334444449999999876 6778899999999987 555554443 3
Q ss_pred CcCeEEEEECCCCCEEEEE-EcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc----eeEEEecC
Q 002753 307 TGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEY 381 (884)
Q Consensus 307 ~~~V~~l~~spdg~~Lasg-~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~----~i~~W~~~ 381 (884)
.+ +..++|+|||+.++++ +.|+.+++||+.+++.+..+..+ ....+++++|++ ..++.+. .+..|+..
T Consensus 73 ~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg----~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 73 PD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG--VEPEGMAVSPDG----KIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred CC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--CCcceEEECCCC----CEEEEEecCCCeEEEEeCC
Confidence 33 4678999999977655 56799999999988877776532 235778999998 6665443 35667888
Q ss_pred CceEEEEec-CCcceEEEEee-ccee-ecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEE
Q 002753 382 GYRLYAIEE-GSSERVLIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (884)
Q Consensus 382 ~~~l~~~~~-~~~~~v~~~~~-~~~~-~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~v 458 (884)
++++..... ++...-..+++ ++.+ +++..++.+++|++..+...- ... ...+..... ......+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~-~~~-----------~~~~~~~~~-~~~~~~i 212 (300)
T TIGR03866 146 TYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK-KIT-----------FEIPGVHPE-AVQPVGI 212 (300)
T ss_pred CCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee-eee-----------ecccccccc-cCCccce
Confidence 777654332 22222355565 5655 455568899999876543210 000 000000000 1123468
Q ss_pred EEccCCCEEEEE-eCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeC--CEEEEEEEecCCCeEEEEEeeCCCCCCc
Q 002753 459 AASKDGMFLAVA-GLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQS 534 (884)
Q Consensus 459 a~S~dG~~lava-g~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~--~~lv~~~~~~~~~~~elr~y~~~~l~~~ 534 (884)
+|+|||++++++ +.++.+ +||..+++-... ... .-.+.++.|.+ ..+++++ ..+.+|++|+.. ..
T Consensus 213 ~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~--~~~~~~~~~~~~g~~l~~~~----~~~~~i~v~d~~---~~ 281 (300)
T TIGR03866 213 KLTKDGKTAFVALGPANRVAVVDAKTYEVLDY--LLV--GQRVWQLAFTPDEKYLLTTN----GVSNDVSVIDVA---AL 281 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCcEEEE--EEe--CCCcceEEECCCCCEEEEEc----CCCCeEEEEECC---CC
Confidence 899999986654 445556 999987653211 111 11355778864 4555542 234579999774 33
Q ss_pred ceEEEEecCC
Q 002753 535 SLLCRKSLLA 544 (884)
Q Consensus 535 ~~l~~~~~~~ 544 (884)
..+.+.++..
T Consensus 282 ~~~~~~~~~~ 291 (300)
T TIGR03866 282 KVIKSIKVGR 291 (300)
T ss_pred cEEEEEEccc
Confidence 3444444433
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.51 E-value=7e-13 Score=139.44 Aligned_cols=214 Identities=17% Similarity=0.219 Sum_probs=160.3
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 002753 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 257 ~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~ 336 (884)
..+.|++......++++|+..|+|+|||++. ..+.+.++. |+..|+++.+.....+||+++..|.|.|-.+
T Consensus 80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lkd--------h~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 80 DNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHRFLKD--------HQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred chHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhhhccC--------CcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 3566766666779999999999999999986 455566777 9999999999999999999999999999999
Q ss_pred cCCeeEEEeccccccceeeeeecCCCCCCccceee-cc---eeEEEecCCceEEEEe-cCCcceE--EEEee--cceeec
Q 002753 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GT---SMMQWDEYGYRLYAIE-EGSSERV--LIFSF--GKCCLN 407 (884)
Q Consensus 337 ~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~s-g~---~i~~W~~~~~~l~~~~-~~~~~~v--~~~~~--~~~~~s 407 (884)
.++....++.......|.-+.|+|.. ..+++ .+ .+.+||..+...+..+ +.|...- ++|++ ...+++
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~sk----r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSK----RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred ccCccccceecCCCCeEEEeeccccc----ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE
Confidence 99887777765434567788898875 44432 22 8999999987765544 4465554 77777 667889
Q ss_pred ccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE
Q 002753 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (884)
Q Consensus 408 ~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~ 486 (884)
.+.|..+.++|...... ...+.-.-|..+++|+++|.+|+.|+.+|.+ .||+...+-.
T Consensus 227 VG~Dkki~~yD~~s~~s---------------------~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQAS---------------------TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred ecccceEEEeecccccc---------------------cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 99999988887653221 1122234588999999999999999999999 9999887644
Q ss_pred EecCccceeeeEEEEEEEeC
Q 002753 487 VFGDITQEQKIQSKGLLWLG 506 (884)
Q Consensus 487 ~f~~~~~e~~~~v~~~~W~~ 506 (884)
.-....+.. .|..++|-.
T Consensus 286 v~v~sah~~--sVt~vafq~ 303 (673)
T KOG4378|consen 286 VAVRSAHDA--SVTRVAFQP 303 (673)
T ss_pred ceEeeeccc--ceeEEEeee
Confidence 322222222 366777753
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=7.2e-13 Score=138.31 Aligned_cols=221 Identities=13% Similarity=0.174 Sum_probs=160.6
Q ss_pred cCCcEEEEeecCCccceeeecccc--------------c----------ccCCCCcEE-EEEcCC-CCEEEEEecCCeEE
Q 002753 228 SNGQLMSCSVSKKGLKLAEFIKID--------------K----------ELGSGDAVC-ASIAPE-QQILAVGTRRGVVE 281 (884)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~--------------~----------~~~h~~~v~-va~sp~-~~~la~g~~dg~v~ 281 (884)
.-|.++|+|.-+..|.+||..-.. . -.+|++++- +++|.. ...||+|+.|.+|+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 346788888888888899853100 0 036888887 888875 46899999999999
Q ss_pred EEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeE-EEeccccccceeeeeec
Q 002753 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLM-STIRQISLSSISSPIVK 359 (884)
Q Consensus 282 lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~~~l~-~tl~~~~~~~v~s~~~s 359 (884)
+||+++ +++..++.. |.+.|.+++|.| ....|.+|+.|+++++.|....... ...+- .+.|-.++|.
T Consensus 270 lWD~~~-g~p~~s~~~--------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~ 338 (463)
T KOG0270|consen 270 LWDVDT-GKPKSSITH--------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWD 338 (463)
T ss_pred EEEcCC-CCcceehhh--------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEec
Confidence 999999 888888887 999999999999 5789999999999999998731111 11111 3457778887
Q ss_pred CCCCCCccceeec---ceeEEEecCCc-eEEEEecCCcceEEEEee----cceeecccCCCCceeeeeeecCCeEEEEec
Q 002753 360 PNQDCKYEPLMSG---TSMMQWDEYGY-RLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (884)
Q Consensus 360 ~~~~~~~~~l~sg---~~i~~W~~~~~-~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~ 431 (884)
|..+ ..+..+ ++++-.|.+.. +++.+.+.|.+.|..+++ ...++|++.|+++++|++...+.+.
T Consensus 339 ~~se---~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~----- 410 (463)
T KOG0270|consen 339 PHSE---NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS----- 410 (463)
T ss_pred CCCc---eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc-----
Confidence 7652 222333 37777787664 788888899999966655 4467899999999999986654421
Q ss_pred CCCCceeEEEeecccccccCC---CceEEEEEccC-CCEEEEEeCCceE-EEEccCC
Q 002753 432 EDTDELKILHLNLPVSYISQN---WPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQK 483 (884)
Q Consensus 432 ~~~~~~~w~~~~~p~~~~~~~---~~I~~va~S~d-G~~lavag~dg~i-iwd~~s~ 483 (884)
...|. +...|.++.|+ --.+|.||..+.+ +||+.+.
T Consensus 411 ----------------v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 411 ----------------VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ----------------cccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 11111 23566777777 3478888888877 9998765
No 151
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.45 E-value=2.9e-12 Score=136.02 Aligned_cols=138 Identities=20% Similarity=0.206 Sum_probs=100.6
Q ss_pred CCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 002753 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (884)
Q Consensus 268 ~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~ 347 (884)
...++.++.||.+.+-+ ..++..+.+.. |.+.|.|-.|+|||.-|.++++||.|++|+-.|. +-+++.+
T Consensus 75 ~d~~~i~s~DGkf~il~--k~~rVE~sv~A--------H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q 143 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN--KSARVERSISA--------HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRSTVVQ 143 (737)
T ss_pred cceEEEEcCCceEEEec--ccchhhhhhhh--------hhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHHHHhh
Confidence 45788889999998844 33455556666 9999999999999999999999999999998764 5556555
Q ss_pred ccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeee
Q 002753 348 ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQV 419 (884)
Q Consensus 348 ~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l 419 (884)
. ..+|.+++|.|+.. .-.+..|..+.+=......-...++.|++-|..+++ ...+++|+.|-..++||-
T Consensus 144 ~-~~~v~c~~W~p~S~--~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 144 N-EESIRCARWAPNSN--SIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred c-CceeEEEEECCCCC--ceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc
Confidence 4 46799999999862 111222222222222223334456788888888877 678899999999999994
No 152
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.43 E-value=2.8e-12 Score=131.16 Aligned_cols=119 Identities=18% Similarity=0.323 Sum_probs=97.0
Q ss_pred cccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc-----cCCCCcEE-EEEcCCCCEEEEEec
Q 002753 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQILAVGTR 276 (884)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~~h~~~v~-va~sp~~~~la~g~~ 276 (884)
++.+|...|-++.|+|. ...++++++.|+++++||...+.+. ..|..-|. ++||.+..+||+|+.
T Consensus 252 Pf~gH~~SVEDLqWSpt---------E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D 322 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPT---------EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD 322 (440)
T ss_pred cccccccchhhhccCCc---------cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence 34557777888888663 3346778888999999999876432 56877787 999999999999999
Q ss_pred CCeEEEEEccC--CCcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccC
Q 002753 277 RGVVELYDLAE--SASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 338 (884)
Q Consensus 277 dg~v~lw~~~~--~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~ 338 (884)
||+++|||++. .++.+..++- |+++|+++.|+| +...+|+++.|..|.+||+.-
T Consensus 323 dGt~~iwDLR~~~~~~pVA~fk~--------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSGQPVATFKY--------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceEEEEEhhhccCCCcceeEEe--------ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999999975 2356667777 999999999999 467888999999999999864
No 153
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.42 E-value=1.2e-11 Score=127.32 Aligned_cols=211 Identities=16% Similarity=0.242 Sum_probs=140.9
Q ss_pred CCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEE
Q 002753 300 WGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W 378 (884)
.+.-.+|+++|..++|+| +.+.+|+|++|.+|.||.+..+.+...+.
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-------------------------------- 121 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-------------------------------- 121 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--------------------------------
Confidence 334456999999999999 67799999999999999997665433221
Q ss_pred ecCCceEEEEecCCcceE--EEEee--cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCc
Q 002753 379 DEYGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (884)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~ 454 (884)
+....+.+|..+| +++.+ ...++|++.|+++.+|++.++..-+ + +.|..-
T Consensus 122 -----epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali--------------------~-l~hpd~ 175 (472)
T KOG0303|consen 122 -----EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI--------------------T-LDHPDM 175 (472)
T ss_pred -----cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceee--------------------e-cCCCCe
Confidence 1222334555555 33334 4567889999999999998887621 2 338899
Q ss_pred eEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCC
Q 002753 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQ 533 (884)
Q Consensus 455 I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~~l~~ 533 (884)
|.+++|+.||.+++++++|..+ +||..+++--.-+ ..||..- -....|.++..+......+.+..++-+|..++|..
T Consensus 176 i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k-~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 176 VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAK-PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred EEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCC-cceeEEeccCceeeeccccccccceeccCcccccC
Confidence 9999999999999999999999 9999998743322 3344321 22356776655544334455667888888766666
Q ss_pred cceEEEEecCCccEEEEcc-CCE---EEEEEcCCeEEEEEEE
Q 002753 534 SSLLCRKSLLAKPIVMDVY-EDY---ILVTYRPFDVHIFHVK 571 (884)
Q Consensus 534 ~~~l~~~~~~~~~~~~~~~-~~~---llv~~~~~~i~i~~~~ 571 (884)
.-.+.+.+- +.-+++.+. .|. -|+.-.|+.|+.|++.
T Consensus 254 P~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 254 PIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred cceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 533434432 334555543 332 2223346677777664
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.42 E-value=8.4e-12 Score=130.80 Aligned_cols=193 Identities=14% Similarity=0.145 Sum_probs=134.7
Q ss_pred cEEEEEcCCC--CEEEEEecCCeEEEEEccCCC---cceEEEeeccCCCCCCCCcCeEEEEECCC-CCEEEEEEcCCcEE
Q 002753 259 AVCASIAPEQ--QILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLT 332 (884)
Q Consensus 259 ~v~va~sp~~--~~la~g~~dg~v~lw~~~~~~---~~~~~l~~~~~~~~~~h~~~V~~l~~spd-g~~Lasg~~dg~v~ 332 (884)
..+++|+|.. +++|+|..-|+|-+||+.+.. .-+..+.. |.++|.++.|+|. -..+.+.+.||+++
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~--------hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP--------HSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc--------CCccccceEecCCChhheeeeccCceee
Confidence 3459999964 699999999999999995311 22334444 9999999999994 45777888899999
Q ss_pred EEeccCCee--EEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceE-EEEecCCcceE--EEEee--c
Q 002753 333 VWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL-YAIEEGSSERV--LIFSF--G 402 (884)
Q Consensus 333 vW~~~~~~l--~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l-~~~~~~~~~~v--~~~~~--~ 402 (884)
.-|+.++.. +.++... ...++++.|+... ..++.+. ..-+|+.+...- .-.+.-|+.+| +++.+ .
T Consensus 261 ~~D~~~~i~e~v~s~~~d-~~~fs~~d~~~e~----~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTD-NIWFSSLDFSAES----RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred eeeecchhhHHHhhcCcc-ceeeeeccccCCC----ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence 999988653 2222211 3345566665554 3333333 345666654221 22223455677 55666 5
Q ss_pred ceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecc-cccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002753 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 403 ~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p-~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~ 480 (884)
..++|++.|++.++||+.+-..+- -| .....|.-+|.++.|||+|-.|++.+.|..+ +||.
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~-----------------sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKA-----------------SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred hheeecccCcceeeeehhhhcCCC-----------------CcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 578999999999999987655431 02 2345788999999999998889999999999 9998
Q ss_pred c
Q 002753 481 R 481 (884)
Q Consensus 481 ~ 481 (884)
.
T Consensus 399 s 399 (498)
T KOG4328|consen 399 S 399 (498)
T ss_pred c
Confidence 4
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.41 E-value=7.1e-12 Score=135.93 Aligned_cols=263 Identities=17% Similarity=0.263 Sum_probs=180.2
Q ss_pred cEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 002753 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 259 ~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~ 337 (884)
.+. ++|-|||..+..+. +..+.+||.++ +..++++++ |...|.|++||.||+.+|+|+.|+.|.+|+..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~nd-G~llqtLKg--------HKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSD-GTLLQPLKG--------HKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCC-ccccccccc--------ccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 555 99999999888754 56899999998 899999999 99999999999999999999999999999864
Q ss_pred CCeeEEEeccccccceeeeeecCCCCCCccceeecc--eeEEEecCCceEEEEecCCcceEEEEee---cceeecccCCC
Q 002753 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSG 412 (884)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~ 412 (884)
+...++-.|.+.+.++.|.|-. ..+++.+ .-.+|+++...+..- ....++...++ |.+++-|-.+|
T Consensus 84 ---lEG~LkYSH~D~IQCMsFNP~~----h~LasCsLsdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 84 ---LEGILKYSHNDAIQCMSFNPIT----HQLASCSLSDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred ---ccceeeeccCCeeeEeecCchH----HHhhhcchhhccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccCc
Confidence 2233333236789999999987 7777665 556788765432111 12345556666 78888899999
Q ss_pred CceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCC-----CEEEEEeCCceE-EEEccCCcEE
Q 002753 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-----MFLAVAGLHGLI-LYDIRQKKWR 486 (884)
Q Consensus 413 ~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG-----~~lavag~dg~i-iwd~~s~~w~ 486 (884)
|+.+++- .++.++.+- .--|.|.||++++|+|.. ..+|++....++ .|.+...
T Consensus 155 TIsiRNk-~gEek~~I~-----------------Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--- 213 (1081)
T KOG1538|consen 155 TISIRNK-NGEEKVKIE-----------------RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--- 213 (1081)
T ss_pred eEEeecC-CCCcceEEe-----------------CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---
Confidence 9988752 333333221 223678999999999872 478888888888 7766432
Q ss_pred EecC-ccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCC--CCCCcceEEEEecCCcc--EEEEccCCEEEEEEc
Q 002753 487 VFGD-ITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKP--IVMDVYEDYILVTYR 561 (884)
Q Consensus 487 ~f~~-~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~--~l~~~~~l~~~~~~~~~--~~~~~~~~~llv~~~ 561 (884)
..+. ..-+-+-.|...+-.|.++++| +.+..+.+|.|+ .|.. + -++.+=+ +.+.++..+..++|.
T Consensus 214 ~Igk~r~L~FdP~CisYf~NGEy~LiG-----Gsdk~L~~fTR~GvrLGT--v---g~~D~WIWtV~~~PNsQ~v~~GCq 283 (1081)
T KOG1538|consen 214 QIGKDRALNFDPCCISYFTNGEYILLG-----GSDKQLSLFTRDGVRLGT--V---GEQDSWIWTVQAKPNSQYVVVGCQ 283 (1081)
T ss_pred eecccccCCCCchhheeccCCcEEEEc-----cCCCceEEEeecCeEEee--c---cccceeEEEEEEccCCceEEEEEc
Confidence 1211 1111111244555568888887 455788999986 2221 1 1111112 344456677888888
Q ss_pred CCeEEEEEEE
Q 002753 562 PFDVHIFHVK 571 (884)
Q Consensus 562 ~~~i~i~~~~ 571 (884)
||.|.-|.+.
T Consensus 284 DGTiACyNl~ 293 (1081)
T KOG1538|consen 284 DGTIACYNLI 293 (1081)
T ss_pred cCeeehhhhH
Confidence 9998887654
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=2.3e-11 Score=131.18 Aligned_cols=203 Identities=16% Similarity=0.173 Sum_probs=132.2
Q ss_pred CCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccccc---c-cCCCCcEEEEEcCCCCEEEEEecCCeEE
Q 002753 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---E-LGSGDAVCASIAPEQQILAVGTRRGVVE 281 (884)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~---~-~~h~~~v~va~sp~~~~la~g~~dg~v~ 281 (884)
.+...|.+|+|+..+.+++.+.++|..-. +-+.+...... + ..++...++.|+|...++.++++ ..|+
T Consensus 519 ~~~k~i~~vtWHrkGDYlatV~~~~~~~~-------VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vR 590 (733)
T KOG0650|consen 519 KHPKSIRQVTWHRKGDYLATVMPDSGNKS-------VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVR 590 (733)
T ss_pred ecCCccceeeeecCCceEEEeccCCCcce-------EEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceE
Confidence 45667888998877777777776553111 11122211111 1 23345567999999999988776 4799
Q ss_pred EEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc-CCeeEEEeccccccceeeeeecC
Q 002753 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKP 360 (884)
Q Consensus 282 lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~-~~~l~~tl~~~~~~~v~s~~~s~ 360 (884)
+||+.. +..++.+.. -...|.+++.+|.|.-|+.|+.|+.+..+|+. +.+...+++-| ...+.+++|++
T Consensus 591 iYdL~k-qelvKkL~t--------g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ 660 (733)
T KOG0650|consen 591 IYDLSK-QELVKKLLT--------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHK 660 (733)
T ss_pred EEehhH-HHHHHHHhc--------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhcc
Confidence 999987 666655544 35678999999999999999999999999995 44567777766 67788888876
Q ss_pred CCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEE
Q 002753 361 NQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (884)
Q Consensus 361 ~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~ 440 (884)
.- ..++ +++.|+++.++.-. +| +++...
T Consensus 661 ry----PLfa------------------------------------s~sdDgtv~Vfhg~-------VY-----~Dl~qn 688 (733)
T KOG0650|consen 661 RY----PLFA------------------------------------SGSDDGTVIVFHGM-------VY-----NDLLQN 688 (733)
T ss_pred cc----ceee------------------------------------eecCCCcEEEEeee-------ee-----hhhhcC
Confidence 53 3333 33444443332100 00 011111
Q ss_pred Eeecc-cccccCCC----ceEEEEEccCCCEEEEEeCCceE-EE
Q 002753 441 HLNLP-VSYISQNW----PVQHVAASKDGMFLAVAGLHGLI-LY 478 (884)
Q Consensus 441 ~~~~p-~~~~~~~~----~I~~va~S~dG~~lavag~dg~i-iw 478 (884)
..-+| ..+.+|.- -|..+.|+|...+|.+||.||++ +|
T Consensus 689 pliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 689 PLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 11122 23445543 48999999999999999999999 87
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.40 E-value=9.8e-12 Score=135.04 Aligned_cols=249 Identities=15% Similarity=0.106 Sum_probs=159.1
Q ss_pred ccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc-----cCCCCcEE-EEEcCC-CCEEEEE
Q 002753 202 DHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPE-QQILAVG 274 (884)
Q Consensus 202 ~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~~h~~~v~-va~sp~-~~~la~g 274 (884)
..+..|...|.+++| -|-...+++++.|.+++.||....... .||...+. ++|.|. ...+++|
T Consensus 94 k~~~aH~nAifDl~w----------apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tG 163 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKW----------APGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTG 163 (720)
T ss_pred cccccccceeEeecc----------CCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeec
Confidence 345677888888887 343335677788999999998765432 68998888 999995 5688999
Q ss_pred ecCCeEEEEEccCCCc--------ceE-EEee---------ccCCCCCCCCcCeEE---EEECCCCCEEEEEEc-CCcEE
Q 002753 275 TRRGVVELYDLAESAS--------LIR-TVSL---------YDWGYSMDDTGPVSC---IAWTPDNSAFAVGWK-SRGLT 332 (884)
Q Consensus 275 ~~dg~v~lw~~~~~~~--------~~~-~l~~---------~~~~~~~~h~~~V~~---l~~spdg~~Lasg~~-dg~v~ 332 (884)
+.||.|.|||+...+. .+. ..++ +......+|.+.|.+ +-+..|...||+++. |++|+
T Consensus 164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK 243 (720)
T KOG0321|consen 164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK 243 (720)
T ss_pred cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence 9999999999975220 000 0000 000111135555655 667789999999988 99999
Q ss_pred EEeccCCeeEEEecc--------cc--ccceeeeeecCCCCCCccce-eecc--eeEEEecCCceE--EEEecCCcc---
Q 002753 333 VWSVSGCRLMSTIRQ--------IS--LSSISSPIVKPNQDCKYEPL-MSGT--SMMQWDEYGYRL--YAIEEGSSE--- 394 (884)
Q Consensus 333 vW~~~~~~l~~tl~~--------~~--~~~v~s~~~s~~~~~~~~~l-~sg~--~i~~W~~~~~~l--~~~~~~~~~--- 394 (884)
|||+.........+- +. .-.+.++..+..| ..+ ++.. +|..|+..+... .....++..
T Consensus 244 VWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG----t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf 319 (720)
T KOG0321|consen 244 VWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG----TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSF 319 (720)
T ss_pred EEeecccccccccCCCcccCccCcccceeeeEEEEecCCC----CeEEEEecCCcEEEEeccccCcCchhhccCccccee
Confidence 999976543322211 10 1123344444333 332 3322 778888765432 122222211
Q ss_pred eE-EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccC-CCEEEEEe
Q 002753 395 RV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAG 471 (884)
Q Consensus 395 ~v-~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~d-G~~lavag 471 (884)
.+ ..+++ +.++++|+.|....+|.+..-.. -|..+.+|.-.|.+++|.|. -.-+|+++
T Consensus 320 ~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~-------------------~~~~l~Ght~eVt~V~w~pS~~t~v~TcS 380 (720)
T KOG0321|consen 320 YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA-------------------PPALLLGHTREVTTVRWLPSATTPVATCS 380 (720)
T ss_pred eeeeecCCCCceEeccCCCcceeeeeecCccC-------------------ChhhhhCcceEEEEEeeccccCCCceeec
Confidence 11 33444 77888888888888888766544 25678899999999999765 22455668
Q ss_pred CCceE-EEEccCC
Q 002753 472 LHGLI-LYDIRQK 483 (884)
Q Consensus 472 ~dg~i-iwd~~s~ 483 (884)
+|-.+ +|++..+
T Consensus 381 dD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 381 DDFRVKIWRLSNG 393 (720)
T ss_pred cCcceEEEeccCc
Confidence 99888 9999655
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.39 E-value=2.7e-11 Score=127.07 Aligned_cols=275 Identities=12% Similarity=0.144 Sum_probs=164.9
Q ss_pred ccceeEEEEcCCc--cEEEEEecCcEEEEEEEEe---cCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEe--
Q 002753 67 EGENLQAVWSPDT--KLIAVVTSSLYLHIFKVQI---TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-- 139 (884)
Q Consensus 67 ~G~~~~v~wsPDg--~~Lav~t~~g~l~l~~l~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~-- 139 (884)
.|.+++++|.|-- +++|+|...|.|-+|++.. .....+. ...+.++|.++.
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~----------------------f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL----------------------FTPHSGPVSGLKFS 243 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE----------------------eccCCccccceEec
Confidence 5788999999965 4788999999999999942 1112211 122333344432
Q ss_pred e-cCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcC
Q 002753 140 S-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL 218 (884)
Q Consensus 140 ~-~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 218 (884)
+ +...++.++.||+++..+.+.......- + .......+.++.+
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~----------------s------------------~~~d~~~fs~~d~-- 287 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNISEEVL----------------S------------------LDTDNIWFSSLDF-- 287 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhhHHHh----------------h------------------cCccceeeeeccc--
Confidence 2 3367888899999998776644322110 0 0001111222332
Q ss_pred CcceEEEEEcCCcEEEEeecCCccceeeeccccc----ccCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEccCCCcce
Q 002753 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLI 292 (884)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~----~~~h~~~v~-va~sp~-~~~la~g~~dg~v~lw~~~~~~~~~ 292 (884)
+.+.+.++.+.+=+...+||...... +.-|..-++ +++||- -.++|||+.|++.+|||++.-....
T Consensus 288 --------~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 288 --------SAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred --------cCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence 33444334344434556777665432 345777788 999996 4589999999999999997622111
Q ss_pred -EEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc----CCeeEEEeccccc--c--ceeeeeecCCCC
Q 002753 293 -RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS----GCRLMSTIRQISL--S--SISSPIVKPNQD 363 (884)
Q Consensus 293 -~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~----~~~l~~tl~~~~~--~--~v~s~~~s~~~~ 363 (884)
..+.. ..|..+|.+..|||+|-.|++.+.|+.|+|||.. .-...+++..... . ..-..+|.|+.
T Consensus 360 sp~lst------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~- 432 (498)
T KOG4328|consen 360 SPFLST------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY- 432 (498)
T ss_pred Ccceec------ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc-
Confidence 12222 3499999999999998889999999999999983 2223334332100 0 11223577765
Q ss_pred CCccceeecc---eeEEEecCCceEEEEecCCcc----eEEEEee-cceeeccc-CCCCceee
Q 002753 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE----RVLIFSF-GKCCLNRG-VSGMTYAR 417 (884)
Q Consensus 364 ~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~----~v~~~~~-~~~~~s~~-~d~~~~~w 417 (884)
..++.|- .+=+++..+++++..+.+... .+..+.+ ...+++|+ ..+.+.+|
T Consensus 433 ---~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 433 ---NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ---cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 5666554 667788888887665433221 2355666 33244443 44444443
No 159
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=8.4e-12 Score=130.16 Aligned_cols=185 Identities=18% Similarity=0.190 Sum_probs=115.7
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 002753 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (884)
Q Consensus 260 v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~ 339 (884)
-+++|+++|..+|+|+.||++|+|+... ...+..... |.+.|.++.|||||++||+-+.| ..+||++..+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~--------~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIA--------HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHh--------hcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence 4599999999999999999999999766 344444444 88999999999999999999998 9999999988
Q ss_pred eeEEEeccc-cccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCceeee
Q 002753 340 RLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQ 418 (884)
Q Consensus 340 ~l~~tl~~~-~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~ 418 (884)
..+.+.... .......+.|+.+++. + +..+... ..+.+.++.++
T Consensus 218 ~~~a~~t~~~k~~~~~~cRF~~d~~~--~--------------~l~laa~-------------------~~~~~~v~~~~ 262 (398)
T KOG0771|consen 218 AALARKTPFSKDEMFSSCRFSVDNAQ--E--------------TLRLAAS-------------------QFPGGGVRLCD 262 (398)
T ss_pred chhhhcCCcccchhhhhceecccCCC--c--------------eEEEEEe-------------------cCCCCceeEEE
Confidence 666555421 1223444455444311 0 0011111 11111111111
Q ss_pred eeec-CCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceee
Q 002753 419 VIYG-EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQK 496 (884)
Q Consensus 419 l~~~-~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~ 496 (884)
+..- .+.+ .+ ..+...-...|.++++|+||+++|+|+.||.+ +|+..+-+--.+-.+ .+.
T Consensus 263 ~~~w~~~~~---------------l~-~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~--aH~ 324 (398)
T KOG0771|consen 263 ISLWSGSNF---------------LR-LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE--AHL 324 (398)
T ss_pred eeeeccccc---------------cc-hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh--hhe
Confidence 1100 0000 00 11222333469999999999999999999999 999866443333222 333
Q ss_pred eEEEEEEEeCC
Q 002753 497 IQSKGLLWLGK 507 (884)
Q Consensus 497 ~~v~~~~W~~~ 507 (884)
+.|+++.+.++
T Consensus 325 ~~VT~ltF~Pd 335 (398)
T KOG0771|consen 325 GFVTGLTFSPD 335 (398)
T ss_pred eeeeeEEEcCC
Confidence 46666666543
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.38 E-value=1.2e-11 Score=134.29 Aligned_cols=231 Identities=16% Similarity=0.166 Sum_probs=153.8
Q ss_pred cccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccccc-ccCCCCcEE-EEEcCCCCEEEEEecCCeE
Q 002753 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-ELGSGDAVC-ASIAPEQQILAVGTRRGVV 280 (884)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~-~~~h~~~v~-va~sp~~~~la~g~~dg~v 280 (884)
.+++|+..|.+++| +.||+.+++|+.|..+-+|+...... ...|++++- +.|||-...+|+++-+ ..
T Consensus 48 tLKgHKDtVycVAy----------s~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dF 116 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAY----------AKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLS-DF 116 (1081)
T ss_pred ccccccceEEEEEE----------ccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchh-hc
Confidence 35677888877776 78999999999999999998653222 257888884 9999999999997764 46
Q ss_pred EEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec-cccccceeeeeec
Q 002753 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR-QISLSSISSPIVK 359 (884)
Q Consensus 281 ~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~-~~~~~~v~s~~~s 359 (884)
-+|..+. +.+...+ ....|.+++|..||++||.|-.||+|.+=+..+......-+ +...+.|.+++++
T Consensus 117 glWS~~q--K~V~K~k---------ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 117 GLWSPEQ--KSVSKHK---------SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWN 185 (1081)
T ss_pred cccChhh--hhHHhhh---------hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEec
Confidence 7888765 3332222 24578999999999999999999999999876654333322 3336789999999
Q ss_pred CCCCCCc-cceeecceeEEEecCCceEEEEecC----CcceE----EEEee---cceeecccCCCCceeeeeeecCCeEE
Q 002753 360 PNQDCKY-EPLMSGTSMMQWDEYGYRLYAIEEG----SSERV----LIFSF---GKCCLNRGVSGMTYARQVIYGEDRLL 427 (884)
Q Consensus 360 ~~~~~~~-~~l~sg~~i~~W~~~~~~l~~~~~~----~~~~v----~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~ 427 (884)
|+..... +.+ .+..|+-. --+..+.| .+..+ .++++ |..++-|+.|+..+++. ...-+
T Consensus 186 p~sg~G~~di~----aV~DW~qT--LSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT--R~Gvr-- 255 (1081)
T KOG1538|consen 186 PSSGEGRNDIL----AVADWGQT--LSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT--RDGVR-- 255 (1081)
T ss_pred CCCCCCccceE----EEEeccce--eEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe--ecCeE--
Confidence 9852111 111 34455421 00111111 11111 22222 77777787777766533 11111
Q ss_pred EEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002753 428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (884)
Q Consensus 428 i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s 482 (884)
..+.-....+|++++..|+|+++++|+.||++ .||+..
T Consensus 256 -----------------LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 256 -----------------LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred -----------------EeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 11222234579999999999999999999999 999854
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.38 E-value=2.3e-11 Score=128.16 Aligned_cols=287 Identities=12% Similarity=0.186 Sum_probs=181.4
Q ss_pred CeEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCc--EEEEEEEEecCceeecCCC
Q 002753 31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSL--YLHIFKVQITEKSIQIGGK 108 (884)
Q Consensus 31 g~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g--~l~l~~l~~~~~~~~~~~~ 108 (884)
.++.++.+.+.+.|||+. ......++.- .-.++| ..+++|+.... |+|++..| .+++|.-....
T Consensus 3 eNl~~aS~gd~~kl~D~s-~~~~~~~~~~---~t~~pg-~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~-------- 68 (673)
T KOG4378|consen 3 ENLHVASTGDKTKLSDFS-DLETKSEYVH---QTAEPG-DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKT-------- 68 (673)
T ss_pred cceeeeccCCceEEeecc-cccCcccccc---CCCCCc-ceeeeccccce-EEEeecCCceeEEEecccCCC--------
Confidence 346666777788999995 3222222110 012345 56899987654 66665544 45555432111
Q ss_pred CCCCceeeeeeeeeeccccccccceeEEEEeecC--CeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccC
Q 002753 109 QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN--KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFP 186 (884)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~ 186 (884)
++.++.. . ..++ .-.|+++.. -+++.|..+|.+.+|+.....
T Consensus 69 --~~Vp~~~--------k-~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl----------------------- 112 (673)
T KOG4378|consen 69 --PEVPRVR--------K-LTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKL----------------------- 112 (673)
T ss_pred --Cccceee--------c-cccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHH-----------------------
Confidence 1111110 0 0111 123444333 456667778888885433111
Q ss_pred CCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc-cCCCCcEE-EEE
Q 002753 187 SNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVC-ASI 264 (884)
Q Consensus 187 ~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-~~h~~~v~-va~ 264 (884)
....+.+|++.|+.|.|+....+++.++-.|.+++.+...+.- ...+ .+....++ +.+
T Consensus 113 -------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-------tt~f~~~sgqsvRll~y 172 (673)
T KOG4378|consen 113 -------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-------TTTFTIDSGQSVRLLRY 172 (673)
T ss_pred -------------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-------ccceecCCCCeEEEeec
Confidence 1123467889999999977666777776666666654332210 0001 22345676 899
Q ss_pred cCCCC-EEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCC-CCEEEEEEcCCcEEEEeccCCeeE
Q 002753 265 APEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLM 342 (884)
Q Consensus 265 sp~~~-~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd-g~~Lasg~~dg~v~vW~~~~~~l~ 342 (884)
+|..+ +|.+++.+|+|.+||+.. ...+..+.. .|..|...++|||. ..+|++-+.|+.|.+||....+..
T Consensus 173 s~skr~lL~~asd~G~VtlwDv~g-~sp~~~~~~-------~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 173 SPSKRFLLSIASDKGAVTLWDVQG-MSPIFHASE-------AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred ccccceeeEeeccCCeEEEEeccC-CCcccchhh-------hccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence 99765 667889999999999986 444433222 29999999999995 457788899999999999988777
Q ss_pred EEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCc-eEEEEecCCcceEEEEee
Q 002753 343 STIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF 401 (884)
Q Consensus 343 ~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~-~l~~~~~~~~~~v~~~~~ 401 (884)
.++.- ..+.++++|+++| ..++.|. .++.+|.++. ..+.+...|+..|..+.|
T Consensus 245 ~~l~y--~~Plstvaf~~~G----~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 245 DRLTY--SHPLSTVAFSECG----TYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred ceeee--cCCcceeeecCCc----eEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 77764 3578999999999 7787775 7888998764 456677778888855555
No 162
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.37 E-value=7.3e-09 Score=116.48 Aligned_cols=351 Identities=22% Similarity=0.298 Sum_probs=213.9
Q ss_pred eEEEEEecCeEEEEEc-cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEE-cCCcc-EEEEEec-CcEEEEEEEEe
Q 002753 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW-SPDTK-LIAVVTS-SLYLHIFKVQI 98 (884)
Q Consensus 23 ~vv~fspdg~lla~~t-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~w-sPDg~-~Lav~t~-~g~l~l~~l~~ 98 (884)
..+.|.+++..++..+ ++.+.+|+...+...+..+..... .....+.+ ++++. .++..+. ++.+.+|++..
T Consensus 69 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----CceeeEEEECCCcceEEeccCCCCccEEEEEecC
Confidence 3367788888888775 889999999644313333321111 23445555 89998 5555555 88999999974
Q ss_pred -cCceeecCCCCCCCceeeeeeeeeeccccccccceeE--EEEeecCCeEEEEec-CCcEEEEecCCccccceeeeccCC
Q 002753 99 -TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSN 174 (884)
Q Consensus 99 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v--~~i~~~~~~llv~~~-~g~i~~~~w~~~~~~~~~l~~~~~ 174 (884)
....... ..+...+ .++.+++..++.+.. ++.+..|.- ......
T Consensus 144 ~~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------- 191 (466)
T COG2319 144 PGKLIRTL-----------------------EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL--RTGKPL------- 191 (466)
T ss_pred CCeEEEEE-----------------------ecCcccEEEEEECCCCCEEEecCCCCCceEEEEc--CCCceE-------
Confidence 1111111 1111122 244555555666654 788877443 221111
Q ss_pred CCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCc-EEEEeecCCccceeeeccccc-
Q 002753 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK- 252 (884)
Q Consensus 175 ~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~i~~w~~~~~~~- 252 (884)
.....+...+..++| +++|+ .++.+..++.+.+|+...+..
T Consensus 192 ---------------------------~~~~~~~~~v~~~~~----------~~~~~~~~~~~~~d~~i~~wd~~~~~~~ 234 (466)
T COG2319 192 ---------------------------STLAGHTDPVSSLAF----------SPDGGLLIASGSSDGTIRLWDLSTGKLL 234 (466)
T ss_pred ---------------------------EeeccCCCceEEEEE----------cCCcceEEEEecCCCcEEEEECCCCcEE
Confidence 011224555666665 36666 333336777777886543322
Q ss_pred ---ccCCCCcEEE-EEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC
Q 002753 253 ---ELGSGDAVCA-SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (884)
Q Consensus 253 ---~~~h~~~v~v-a~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d 328 (884)
+.+|.... + .|+|++.++++++.|+.+++|+............. |...|.++.|+|++..+++++.|
T Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~d 305 (466)
T COG2319 235 RSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG--------HSSSVLSVAFSPDGKLLASGSSD 305 (466)
T ss_pred eeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec--------CCccEEEEEECCCCCEEEEeeCC
Confidence 24565554 3 79999999999999999999999863332333333 88999999999999999999999
Q ss_pred CcEEEEeccCCeeEEEec--cccccceeeeeecCCCCCCccceeec----ceeEEEecCCceEEEEecCCcceEEEEeec
Q 002753 329 RGLTVWSVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSG----TSMMQWDEYGYRLYAIEEGSSERVLIFSFG 402 (884)
Q Consensus 329 g~v~vW~~~~~~l~~tl~--~~~~~~v~s~~~s~~~~~~~~~l~sg----~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~ 402 (884)
+.+++|+..+........ .| ...+..+.+ +.. ...+..+ ..+..|+............... +..+.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 379 (466)
T COG2319 306 GTVRLWDLETGKLLSSLTLKGH-EGPVSSLSF-SPD---GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS 379 (466)
T ss_pred CcEEEEEcCCCceEEEeeeccc-CCceEEEEE-CCC---CCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC
Confidence 889999998877666655 45 345777777 421 1222222 2455588776652222222221 3222221
Q ss_pred -c-eee-cccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EE
Q 002753 403 -K-CCL-NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (884)
Q Consensus 403 -~-~~~-s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iw 478 (884)
. ... .+..++.+.+|+....... .....+...+....+++++..++.++.++.+ .|
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (466)
T COG2319 380 PDGRVVSSGSTDGTVRLWDLSTGSLL--------------------RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439 (466)
T ss_pred CCCCEEEEecCCCceEEEecccCeee--------------------eeccCCCCcEEEEEECCCCcEEEEecCCCcEEEE
Confidence 1 112 2456677777775544331 1111111679999999999999999999999 99
Q ss_pred EccC
Q 002753 479 DIRQ 482 (884)
Q Consensus 479 d~~s 482 (884)
+..+
T Consensus 440 ~~~~ 443 (466)
T COG2319 440 DLKT 443 (466)
T ss_pred eccC
Confidence 9877
No 163
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.7e-11 Score=127.87 Aligned_cols=206 Identities=16% Similarity=0.192 Sum_probs=130.2
Q ss_pred CCceEEEEEecCeEEEEE-ccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002753 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (884)
Q Consensus 20 ~~~~vv~fspdg~lla~~-t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~ 98 (884)
+.+.+++|+.||+.+|++ +|++++||++. .... ..+-.++++++.++.|||||+.||+.+.+ ..+||++..
T Consensus 145 g~~k~vaf~~~gs~latgg~dg~lRv~~~P-s~~t------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 145 GQQKVVAFNGDGSKLATGGTDGTLRVWEWP-SMLT------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred CcceEEEEcCCCCEeeeccccceEEEEecC-cchh------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 356899999999999998 68999999983 2211 12335678999999999999999999999 799999975
Q ss_pred cCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCcc
Q 002753 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (884)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~ 178 (884)
+..-. .+... +.++++..+ ++.-++.. ..+
T Consensus 217 g~~~a-~~t~~-------------------------------~k~~~~~~c------RF~~d~~~-~~l----------- 246 (398)
T KOG0771|consen 217 GAALA-RKTPF-------------------------------SKDEMFSSC------RFSVDNAQ-ETL----------- 246 (398)
T ss_pred Cchhh-hcCCc-------------------------------ccchhhhhc------eecccCCC-ceE-----------
Confidence 52100 00000 011111100 00000000 000
Q ss_pred ceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeee----ccccccc
Q 002753 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF----IKIDKEL 254 (884)
Q Consensus 179 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~----~~~~~~~ 254 (884)
. .++...|-|.+.. . .+.+|+. ...+...
T Consensus 247 ----------------------------------~--------laa~~~~~~~v~~---~--~~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 247 ----------------------------------R--------LAASQFPGGGVRL---C--DISLWSGSNFLRLRKKIK 279 (398)
T ss_pred ----------------------------------E--------EEEecCCCCceeE---E--Eeeeeccccccchhhhhh
Confidence 0 0000011111111 0 0112222 1111223
Q ss_pred CCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEE
Q 002753 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (884)
Q Consensus 255 ~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW 334 (884)
.++...++++|++|+++|.|+.||.|.|++..+ -+.++..+. .|.+.|+.+.|+||.+++++-+.|.+..|.
T Consensus 280 ~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~-lq~~~~vk~-------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS-LQRLQYVKE-------AHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred ccCcceeEEEcCCCcEEEEeccCCcEEEEEece-eeeeEeehh-------hheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 455566799999999999999999999999887 555554433 399999999999999999999999988888
Q ss_pred eccC
Q 002753 335 SVSG 338 (884)
Q Consensus 335 ~~~~ 338 (884)
.+..
T Consensus 352 ~l~v 355 (398)
T KOG0771|consen 352 KLAV 355 (398)
T ss_pred EEee
Confidence 8764
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.35 E-value=1.9e-11 Score=125.19 Aligned_cols=200 Identities=15% Similarity=0.200 Sum_probs=147.2
Q ss_pred cCCCCcEE-EEEcC--CCCEEEEEecCCeEEEEEccCC---------------CcceEEEeeccCCCCCCCCcCeEEEEE
Q 002753 254 LGSGDAVC-ASIAP--EQQILAVGTRRGVVELYDLAES---------------ASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (884)
Q Consensus 254 ~~h~~~v~-va~sp--~~~~la~g~~dg~v~lw~~~~~---------------~~~~~~l~~~~~~~~~~h~~~V~~l~~ 315 (884)
..|.+.+. +..++ +..+.|+=+..|.|.||++... .+.+.++.+ |.+.=..++|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g--------hk~EGy~LdW 219 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG--------HKGEGYGLDW 219 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc--------cCccceeeec
Confidence 34555554 55555 4457777788899999998641 123334444 8888899999
Q ss_pred CCCCC-EEEEEEcCCcEEEEeccCCeeE---EEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCc---eE
Q 002753 316 TPDNS-AFAVGWKSRGLTVWSVSGCRLM---STIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY---RL 385 (884)
Q Consensus 316 spdg~-~Lasg~~dg~v~vW~~~~~~l~---~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~---~l 385 (884)
||--. .|++|..-+.|++|...++.-. ..+.+| +.+|-.+.+||.. ...++|++ ++++||.+.+ .+
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH-~~SVEDLqWSptE---~~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH-TKSVEDLQWSPTE---DGVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCcccccc-ccchhhhccCCcc---CceEEeeecCceEEEEEecCCCccce
Confidence 99322 4778887799999999776422 234455 7889999999986 14556665 9999999887 34
Q ss_pred EEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEcc
Q 002753 386 YAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK 462 (884)
Q Consensus 386 ~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~ 462 (884)
+.+ +.|...|..+++ ...+++|+.||+.++|++.+-... +....|.-|..||+++.|+|
T Consensus 296 ~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-----------------~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-----------------QPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred eEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-----------------CcceeEEeccCCeeEEEecc
Confidence 433 778888888888 336899999999999998765432 12357888999999999998
Q ss_pred C-CCEEEEEeCCceE-EEEccCC
Q 002753 463 D-GMFLAVAGLHGLI-LYDIRQK 483 (884)
Q Consensus 463 d-G~~lavag~dg~i-iwd~~s~ 483 (884)
. ...+|++|.|..+ +||+...
T Consensus 358 ~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 358 HEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ccCceEEeccCCCcEEEEEeecc
Confidence 6 5678888888888 9999654
No 165
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.35 E-value=2.2e-09 Score=118.11 Aligned_cols=234 Identities=12% Similarity=0.159 Sum_probs=129.7
Q ss_pred EEEccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEe-cCcEEEEEEEEecCceeecCCCCCCCc
Q 002753 35 LIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKSIQIGGKQPSGL 113 (884)
Q Consensus 35 a~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t-~~g~l~l~~l~~~~~~~~~~~~~~~~~ 113 (884)
|...+++|.+|++. ....+....+ +...|....++++||+++|++++ .++.|.+|++. +...+...
T Consensus 7 ~~~~~~~I~~~~~~-~~g~l~~~~~----~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~------- 73 (330)
T PRK11028 7 ASPESQQIHVWNLN-HEGALTLLQV----VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFA------- 73 (330)
T ss_pred EcCCCCCEEEEEEC-CCCceeeeeE----EecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEe-------
Confidence 33457899999995 2211111111 12224456799999999998876 46788999986 22111110
Q ss_pred eeeeeeeeeeccccccccceeEEEEeecCCeEEEEec-CCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcce
Q 002753 114 FFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLAS 192 (884)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~-~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~ 192 (884)
......+ ...-.++.++++.++++.. ++.+..++.+........ +..
T Consensus 74 ----------~~~~~~~-~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~----------~~~----------- 121 (330)
T PRK11028 74 ----------AESPLPG-SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP----------IQI----------- 121 (330)
T ss_pred ----------eeecCCC-CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc----------eee-----------
Confidence 0000111 1112355667777887764 667777655421100000 000
Q ss_pred ecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEE-eecCCccceeeeccccccc----------CCCCcEE
Q 002753 193 VDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSC-SVSKKGLKLAEFIKIDKEL----------GSGDAVC 261 (884)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~-~~~d~~i~~w~~~~~~~~~----------~h~~~v~ 261 (884)
...... ...+.++|||+.+++ ...++.+.+|+......+. ....+-.
T Consensus 122 ------------~~~~~~----------~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~ 179 (330)
T PRK11028 122 ------------IEGLEG----------CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRH 179 (330)
T ss_pred ------------ccCCCc----------ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCce
Confidence 000000 122456889987654 4456778888876422111 1122334
Q ss_pred EEEcCCCCEEEEEec-CCeEEEEEccCC-Ccc--eEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEc-CCcEEEEec
Q 002753 262 ASIAPEQQILAVGTR-RGVVELYDLAES-ASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSV 336 (884)
Q Consensus 262 va~sp~~~~la~g~~-dg~v~lw~~~~~-~~~--~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-dg~v~vW~~ 336 (884)
++|+|++++++++.. +++|.+|+++.. +.. +..+.. .+....+......+.++|||++|.++.+ ++.|.+|++
T Consensus 180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM--MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec--CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 899999999988776 899999999742 221 222221 1111112223346899999999998854 577888877
Q ss_pred c
Q 002753 337 S 337 (884)
Q Consensus 337 ~ 337 (884)
.
T Consensus 258 ~ 258 (330)
T PRK11028 258 S 258 (330)
T ss_pred e
Confidence 4
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.34 E-value=2.8e-11 Score=125.22 Aligned_cols=134 Identities=16% Similarity=0.285 Sum_probs=105.6
Q ss_pred EEcCCc-EEEEeecCCccceeeeccccc------------ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccC----
Q 002753 226 LYSNGQ-LMSCSVSKKGLKLAEFIKIDK------------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE---- 287 (884)
Q Consensus 226 ~s~dG~-~~~~~~~d~~i~~w~~~~~~~------------~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~---- 287 (884)
+-.++. .++++..|..+++|....... +..|..+++ +.|+|+|.++|+|+.+|.|.+|...+
T Consensus 21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~ 100 (434)
T KOG1009|consen 21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF 100 (434)
T ss_pred eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc
Confidence 334444 788999999999997764321 146888888 99999999999999999999998762
Q ss_pred --CC-----c----ceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeee
Q 002753 288 --SA-----S----LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 356 (884)
Q Consensus 288 --~~-----~----~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~ 356 (884)
.. + ..+.+.+ |...|..++|+||+.++++|+.|+++++||+..+.+.+.+.+| ...++.+
T Consensus 101 ~~d~e~~~~ke~w~v~k~lr~--------h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~~yvqgv 171 (434)
T KOG1009|consen 101 DADTEADLNKEKWVVKKVLRG--------HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-EHYVQGV 171 (434)
T ss_pred cccchhhhCccceEEEEEecc--------cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-cccccee
Confidence 01 0 1123333 8899999999999999999999999999999999999999888 6677787
Q ss_pred eecCCCCCCccceeec
Q 002753 357 IVKPNQDCKYEPLMSG 372 (884)
Q Consensus 357 ~~s~~~~~~~~~l~sg 372 (884)
++.|-. +++++-
T Consensus 172 awDpl~----qyv~s~ 183 (434)
T KOG1009|consen 172 AWDPLN----QYVASK 183 (434)
T ss_pred ecchhh----hhhhhh
Confidence 877765 555433
No 167
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.33 E-value=2e-11 Score=127.72 Aligned_cols=193 Identities=15% Similarity=0.234 Sum_probs=140.1
Q ss_pred CCCEEEEEecCCeEEEEEccCCCcceEEEeec--------cC---C-CCCCCCcCeEEEEECCCC-CEEEEEEcCCcEEE
Q 002753 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLY--------DW---G-YSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTV 333 (884)
Q Consensus 267 ~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~--------~~---~-~~~~h~~~V~~l~~spdg-~~Lasg~~dg~v~v 333 (884)
.|+++|+|+.|-.|.|||++-.......+... +. . ...+|+..|.+++|..+- ..||+|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 47899999999999999997522222211110 00 1 123699999999999864 58999999999999
Q ss_pred EeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCC----ceEEEEecCCcceEEEEee--cce
Q 002753 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLIFSF--GKC 404 (884)
Q Consensus 334 W~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~----~~l~~~~~~~~~~v~~~~~--~~~ 404 (884)
||+..+++..++..| ...|+++.|+|..+ ..+++|+ ++.+.+.+. +.-|... +.-.+ +.+.+ ...
T Consensus 271 WD~~~g~p~~s~~~~-~k~Vq~l~wh~~~p---~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-g~VEk-v~w~~~se~~ 344 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHH-GKKVQTLEWHPYEP---SVLLSGSYDGTVALKDCRDPSNSGKEWKFD-GEVEK-VAWDPHSENS 344 (463)
T ss_pred EEcCCCCcceehhhc-CCceeEEEecCCCc---eEEEeccccceEEeeeccCccccCceEEec-cceEE-EEecCCCcee
Confidence 999999999999866 77899999998753 5677887 666666552 2223321 21112 33333 456
Q ss_pred eecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccC-CCEEEEEeCCceE-EEEccC
Q 002753 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQ 482 (884)
Q Consensus 405 ~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~d-G~~lavag~dg~i-iwd~~s 482 (884)
++.+..||+++-.|+++.++. ..+...|+.+|.++++++. -..++++|.|+.+ +|++..
T Consensus 345 f~~~tddG~v~~~D~R~~~~~-------------------vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGKP-------------------VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEEecCCceEEeeecCCCCCc-------------------eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 677788999998888776652 3467799999999999876 4579999999999 999865
Q ss_pred Cc
Q 002753 483 KK 484 (884)
Q Consensus 483 ~~ 484 (884)
..
T Consensus 406 ~~ 407 (463)
T KOG0270|consen 406 DS 407 (463)
T ss_pred CC
Confidence 43
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=4.3e-12 Score=146.89 Aligned_cols=246 Identities=18% Similarity=0.195 Sum_probs=176.2
Q ss_pred CccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccc---cc------ccCCCCcEE-EEEcCCCC-EEEEEec
Q 002753 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI---DK------ELGSGDAVC-ASIAPEQQ-ILAVGTR 276 (884)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~---~~------~~~h~~~v~-va~sp~~~-~la~g~~ 276 (884)
+....++.|...... +. -+++.|..||.+.+|+.... .. ...|++.|. +.||+.+. +||+|+.
T Consensus 64 ~~rF~kL~W~~~g~~-----~~-GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSH-----SH-GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred cccceeeeecccCCC-----cc-ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC
Confidence 344566666443221 11 24677778888888886652 11 156888888 99999765 9999999
Q ss_pred CCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccc-ccee
Q 002753 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SSIS 354 (884)
Q Consensus 277 dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~-~~v~ 354 (884)
||.|.|||++. .+.-.+.. +....+.|.+++|+. ..+.||+++.+|...|||+...+.+-.+..+.. ..++
T Consensus 138 ~geI~iWDlnn-~~tP~~~~------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 138 DGEILIWDLNK-PETPFTPG------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred CCcEEEeccCC-cCCCCCCC------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 99999999987 32221111 112467899999987 467889999999999999998877766665533 3478
Q ss_pred eeeecCCCCCCccceeecc----eeEEEecCC-ceEEEEecCCcceEEEEee----cceeecccCCCCceeeeeeecCCe
Q 002753 355 SPIVKPNQDCKYEPLMSGT----SMMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDR 425 (884)
Q Consensus 355 s~~~s~~~~~~~~~l~sg~----~i~~W~~~~-~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~l~~~~~~ 425 (884)
.++|+|+... .-.++++. .+..||.+. .....+.++|...|..+++ .+.++|++.|+.+..|+..+++.
T Consensus 211 ~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv- 288 (1049)
T KOG0307|consen 211 VLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV- 288 (1049)
T ss_pred eeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE-
Confidence 8999999732 11223332 789999754 3345566789999988888 36889999999999999766543
Q ss_pred EEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCC-EEEEEeCCceE-EEEccCCcEEE
Q 002753 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKWRV 487 (884)
Q Consensus 426 ~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~-~lavag~dg~i-iwd~~s~~w~~ 487 (884)
..++-....++..+.|+|..- .+|+++-||.| ||++.+..|..
T Consensus 289 -------------------l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~~ 333 (1049)
T KOG0307|consen 289 -------------------LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTDL 333 (1049)
T ss_pred -------------------eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCccc
Confidence 222223455688999998866 89999999999 99998876544
No 169
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=2.7e-09 Score=120.99 Aligned_cols=357 Identities=17% Similarity=0.159 Sum_probs=214.2
Q ss_pred eEEEEEecCeEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhccc-eeEEEEcCCccEEEEEecCcEEEEEEEEe-cC
Q 002753 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGE-NLQAVWSPDTKLIAVVTSSLYLHIFKVQI-TE 100 (884)
Q Consensus 23 ~vv~fspdg~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~-~~~v~wsPDg~~Lav~t~~g~l~l~~l~~-~~ 100 (884)
.+|.+++.|.+...+....+.+|++.+..-....+.+ . .+|-. .++.++||.++++|++-.+|.|++|.=-. +.
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~---~-~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~ 239 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDI---T-VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD 239 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeeccchh---h-hhhcccceeEEeccccceEEEeccCCcEEEEecccccc
Confidence 4577889999999999999999999644311111111 1 12222 47899999999999999999999996422 11
Q ss_pred ceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccce
Q 002753 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (884)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~ 180 (884)
.... ...+.++ .+.....+++.++.+++.|...|.+.. |..+.....=
T Consensus 240 ~~~t----------~t~lHWH--------~~~V~~L~fS~~G~~LlSGG~E~VLv~--Wq~~T~~kqf------------ 287 (792)
T KOG1963|consen 240 DSET----------CTLLHWH--------HDEVNSLSFSSDGAYLLSGGREGVLVL--WQLETGKKQF------------ 287 (792)
T ss_pred cccc----------ceEEEec--------ccccceeEEecCCceEeecccceEEEE--EeecCCCccc------------
Confidence 1100 0111111 112234467889999999999999877 4444332110
Q ss_pred eecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccc-eeeecccc---cccCC
Q 002753 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKID---KELGS 256 (884)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~-~w~~~~~~---~~~~h 256 (884)
+-.-.+.|..+.++++....+.+..|.++.+....|..++ ..++..+. .....
T Consensus 288 -----------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~ 344 (792)
T KOG1963|consen 288 -----------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRP 344 (792)
T ss_pred -----------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccc
Confidence 0112456888888777777777777888777766665554 22222221 01122
Q ss_pred CCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCC---CCCcCeEEEEECCCCCEEEEEEcCCcEE
Q 002753 257 GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM---DDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (884)
Q Consensus 257 ~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~---~h~~~V~~l~~spdg~~Lasg~~dg~v~ 332 (884)
.+-.. ++++|.-+.++..+..|.|.+||+.+ .+.+..+...+..+.. .+.-.+++++.+-.|.+++++...
T Consensus 345 ~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t-d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~---- 419 (792)
T KOG1963|consen 345 QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT-DSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR---- 419 (792)
T ss_pred cccceeEEEcCCCCceeecCCCceEEEEeccc-cceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee----
Confidence 33344 89999888899999999999999987 5555544432222211 244567888888888888886531
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCC----ceEEE-EecCCcceEEE--E-ee--c
Q 002753 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYG----YRLYA-IEEGSSERVLI--F-SF--G 402 (884)
Q Consensus 333 vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~----~~l~~-~~~~~~~~v~~--~-~~--~ 402 (884)
-+..+ + .++ -...++|.... ..|-. +...|...+.+ + .+ .
T Consensus 420 -~d~~~---------~-----------~~~---------e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs 469 (792)
T KOG1963|consen 420 -IDKFN---------F-----------FDG---------EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS 469 (792)
T ss_pred -ehhhh---------c-----------cCc---------eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc
Confidence 00000 0 000 01344553322 11111 22345444422 2 22 2
Q ss_pred ceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceEEEEccC
Q 002753 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQ 482 (884)
Q Consensus 403 ~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~iiwd~~s 482 (884)
..+++++.|+.+++|.+....+- ...+..|....+ ..| |+.|+..++||.||..||+|-.|-..+||..+
T Consensus 470 ~~~vta~~dg~~KiW~~~~~~n~-------~k~~s~W~c~~i-~sy--~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 470 VRCVTASVDGDFKIWVFTDDSNI-------YKKSSNWTCKAI-GSY--HKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred ceeEEeccCCeEEEEEEeccccc-------CcCccceEEeee-ecc--ccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 26789999999999997543331 111224533222 224 78899999999999988887665555999877
Q ss_pred C
Q 002753 483 K 483 (884)
Q Consensus 483 ~ 483 (884)
.
T Consensus 540 ~ 540 (792)
T KOG1963|consen 540 K 540 (792)
T ss_pred h
Confidence 3
No 170
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.32 E-value=2.9e-10 Score=121.08 Aligned_cols=124 Identities=18% Similarity=0.315 Sum_probs=94.5
Q ss_pred EEcCCcEEEEeecCCccceeeeccccc--ccCCCCcE-EEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCC
Q 002753 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (884)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~~--~~~h~~~v-~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~ 302 (884)
.++||.-+++.+.||.+++|.-...-+ +.....++ |++|.|+.+-+.. |..|.+.+=.+.. ...+-.++.
T Consensus 112 W~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~-c~g~h~~IKpL~~-n~k~i~WkA----- 184 (737)
T KOG1524|consen 112 WSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVF-CQGGHISIKPLAA-NSKIIRWRA----- 184 (737)
T ss_pred cCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEE-ecCCeEEEeeccc-ccceeEEec-----
Confidence 379999999999999999997432111 12234455 5999999887776 4566777766665 444555777
Q ss_pred CCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCC
Q 002753 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (884)
Q Consensus 303 ~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~ 361 (884)
|.|-|.++.|+|....+++|++|-..+|||-+|..++.+-.. ..++++++|.|+
T Consensus 185 ---HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~--ey~ITSva~npd 238 (737)
T KOG1524|consen 185 ---HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAE--EYAITSVAFNPE 238 (737)
T ss_pred ---cCcEEEEeecCccccceeecCCceeEEeecccCcccccCChh--ccceeeeeeccc
Confidence 999999999999999999999999999999999877765432 456777777776
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.32 E-value=1e-10 Score=118.00 Aligned_cols=203 Identities=14% Similarity=0.172 Sum_probs=144.3
Q ss_pred CCCcEE-EEEcCC----CCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCC-CEEEEEEcCC
Q 002753 256 SGDAVC-ASIAPE----QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSR 329 (884)
Q Consensus 256 h~~~v~-va~sp~----~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg-~~Lasg~~dg 329 (884)
|..... ++|+-+ ..++|.|+.-|.|||.|+.+ ++....+.+ |.+.|+.+++.|+. +++.++++|.
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~~g--------hG~sINeik~~p~~~qlvls~SkD~ 158 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNYRG--------HGGSINEIKFHPDRPQLVLSASKDH 158 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhccceec--------cCccchhhhcCCCCCcEEEEecCCc
Confidence 444443 666653 45899999999999999988 777777887 99999999999974 7899999999
Q ss_pred cEEEEeccCCeeEEEecc--ccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEe---------------
Q 002753 330 GLTVWSVSGCRLMSTIRQ--ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE--------------- 389 (884)
Q Consensus 330 ~v~vW~~~~~~l~~tl~~--~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~--------------- 389 (884)
+||+|++.+..++..+.| .|.+.|-++.|++++ +.++|++ ++++|.....+....+
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g----d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pf 234 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG----DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPF 234 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcCCC----CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcC
Confidence 999999999999988865 237889999999999 8888887 8999998743322111
Q ss_pred -------------cCCcceEEEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeeccc-------cc
Q 002753 390 -------------EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV-------SY 448 (884)
Q Consensus 390 -------------~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~-------~~ 448 (884)
.-|...|=+.++ +..+++-|-++.+..|.-.+-++. |+.++.|. ++
T Consensus 235 pt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~-------------~~~vkp~es~~Ti~~~~ 301 (385)
T KOG1034|consen 235 PTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEES-------------IHNVKPPESATTILGEF 301 (385)
T ss_pred CccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhh-------------hhccCCCccceeeeeEe
Confidence 112222333344 666777777777777765332222 11111111 12
Q ss_pred ccCCCceEEE--EEccCCCEEEEEeCCceE-EEEccCCc
Q 002753 449 ISQNWPVQHV--AASKDGMFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 449 ~~~~~~I~~v--a~S~dG~~lavag~dg~i-iwd~~s~~ 484 (884)
.-.+..|+.+ +|+|-++.||.|+..|.+ +||+....
T Consensus 302 ~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 302 DYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred ccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 2223345555 556779999999999999 99997654
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.31 E-value=4.2e-12 Score=141.28 Aligned_cols=226 Identities=15% Similarity=0.255 Sum_probs=164.2
Q ss_pred eEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEee
Q 002753 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (884)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~ 297 (884)
+++++...|+.++++++|.-+|+|...++.++ .||+.-++ ++++.+.-++|+++.|..|++|.+.+ +.++..+.+
T Consensus 194 yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLrg 272 (1113)
T KOG0644|consen 194 YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLRG 272 (1113)
T ss_pred eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-CchHHHHhc
Confidence 34567788999999999999999998888776 78998888 99999999999999999999999998 888888888
Q ss_pred ccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc--------------CCeeEEEeccccc-------------
Q 002753 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--------------GCRLMSTIRQISL------------- 350 (884)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~--------------~~~l~~tl~~~~~------------- 350 (884)
|+|.|++++|||-- +.+.||++++||.. ++.+++++.....
T Consensus 273 --------htgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea 340 (1113)
T KOG0644|consen 273 --------HTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA 340 (1113)
T ss_pred --------cccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence 99999999999965 77889999999975 1222222221100
Q ss_pred --cceeeeeecCCC------CCCc-cceeec---ceeEEEecCCceEEEEecCCcceEEEEee----cceeecccCCCCc
Q 002753 351 --SSISSPIVKPNQ------DCKY-EPLMSG---TSMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMT 414 (884)
Q Consensus 351 --~~v~s~~~s~~~------~~~~-~~l~sg---~~i~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~ 414 (884)
..+..+++..+. .+.. ....++ ....+|+..++++.....+|...++++++ .+...+++.|+..
T Consensus 341 ~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst 420 (1113)
T KOG0644|consen 341 RNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST 420 (1113)
T ss_pred ccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence 000001110000 0000 001111 15678999999988888888888877766 5566789999999
Q ss_pred eeeeeeecCCeEEEEecCCCCceeEEEeeccccc-ccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002753 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY-ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (884)
Q Consensus 415 ~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~-~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~ 481 (884)
.+|++..|.. ...| .+ .+.+...+||+||+.++..-+-|.+ +....
T Consensus 421 ~iwdi~eg~p--------------------ik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 421 IIWDIWEGIP--------------------IKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred EeeecccCCc--------------------ceeeecc-cceeeccccCCCCceEecCCCCCceEEeccC
Confidence 9999877654 1222 34 4567788999999999998888877 55543
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2.6e-10 Score=110.34 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=145.0
Q ss_pred ccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEE
Q 002753 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (884)
Q Consensus 67 ~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ll 146 (884)
+..+.+-+|||-+++|+++...|.|-+..+..-..... ..++. ..-+...++++++..+...++.++
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa----~~~gk---------~~iv~eqahdgpiy~~~f~d~~Ll 76 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA----EPPGK---------LKIVPEQAHDGPIYYLAFHDDFLL 76 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc----CCCCC---------cceeeccccCCCeeeeeeehhhee
Confidence 44556778999999999999999999999863221111 11100 001122567778877777665555
Q ss_pred EEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEE
Q 002753 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (884)
Q Consensus 147 v~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (884)
++ .+|.++-|.|..+....- . ++. --...|...+ ...--.|..|-.+|.
T Consensus 77 s~-gdG~V~gw~W~E~~es~~-~--K~l---we~~~P~~~~-----------------~~evPeINam~ldP~------- 125 (325)
T KOG0649|consen 77 SG-GDGLVYGWEWNEEEESLA-T--KRL---WEVKIPMQVD-----------------AVEVPEINAMWLDPS------- 125 (325)
T ss_pred ec-cCceEEEeeehhhhhhcc-c--hhh---hhhcCccccC-----------------cccCCccceeEeccC-------
Confidence 54 559999999986543110 0 000 0000110000 000112444443332
Q ss_pred EcCCcEEEEeecCCccceeeeccccc---ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCC-
Q 002753 227 YSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG- 301 (884)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~---~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~- 301 (884)
.+.++ ++..|+.+..||..+++. ..||++-+. ++--.....|.+|++||++|+||.++ ++++..+...+.+
T Consensus 126 --enSi~-~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 126 --ENSIL-FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPN 201 (325)
T ss_pred --CCcEE-EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChh
Confidence 23333 334666677777776643 379999887 55434556788999999999999998 8888887765433
Q ss_pred CCCCCCc-CeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecC
Q 002753 302 YSMDDTG-PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (884)
Q Consensus 302 ~~~~h~~-~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~ 360 (884)
..+.|.| .|-+++ -+...|+.|+. ..+.+|.+....+.+++.-. ..+..+.|..
T Consensus 202 ~lRp~~g~wigala--~~edWlvCGgG-p~lslwhLrsse~t~vfpip--a~v~~v~F~~ 256 (325)
T KOG0649|consen 202 LLRPDWGKWIGALA--VNEDWLVCGGG-PKLSLWHLRSSESTCVFPIP--ARVHLVDFVD 256 (325)
T ss_pred hcCcccCceeEEEe--ccCceEEecCC-CceeEEeccCCCceEEEecc--cceeEeeeec
Confidence 2233444 355555 45567887776 78999999988877776542 3455566643
No 174
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.28 E-value=7e-11 Score=115.72 Aligned_cols=268 Identities=16% Similarity=0.187 Sum_probs=156.9
Q ss_pred CceEEEEEecCeEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhccc--eeEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002753 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGE--NLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (884)
Q Consensus 21 ~~~vv~fspdg~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~--~~~v~wsPDg~~Lav~t~~g~l~l~~l~~ 98 (884)
....+.|-.++++++-...+.|.+|.. +.. |..--++.+|. ++.+.--|+ ..|.+...|+.|.+|++..
T Consensus 16 ~v~s~~fqa~~rL~sg~~~G~V~~w~l-qt~-------r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 16 SVTSVLFQANERLMSGLSVGIVKMWVL-QTE-------RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred hheehhhccchhhhcccccceEEEEEe-ecC-------ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 344567778888777667889999999 342 33333332332 345555666 5678888899999999865
Q ss_pred cCce---------eec------CCCCCCCcee--eee---ee-----eeecccc-----ccccceeEEEEeec---CC--
Q 002753 99 TEKS---------IQI------GGKQPSGLFF--IKI---SL-----VLNEQLP-----FAEKGLSVSNIVSD---NK-- 143 (884)
Q Consensus 99 ~~~~---------~~~------~~~~~~~~~l--~~~---~~-----~~~~~~~-----~~~~~~~v~~i~~~---~~-- 143 (884)
+.-. +.| ++....+..+ .+- +. ...-.+. -....++++|...+ +.
T Consensus 87 s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ 166 (323)
T KOG0322|consen 87 SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF 166 (323)
T ss_pred cceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence 3310 000 0000000000 000 00 0000000 01224556666422 22
Q ss_pred eEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceE
Q 002753 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (884)
Q Consensus 144 ~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (884)
.+++|-.+|.+..|+...+. ...++ |... ........++..+.+++|.+..+.-
T Consensus 167 lllaGyEsghvv~wd~S~~~-~~~~~---~~~~----------------------kv~~~~ash~qpvlsldyas~~~rG 220 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGD-KIIQL---PQSS----------------------KVESPNASHKQPVLSLDYASSCDRG 220 (323)
T ss_pred EEEEeccCCeEEEEEccCCc-eeecc---cccc----------------------ccccchhhccCcceeeeechhhcCC
Confidence 34556778988775443321 11110 0000 0012234677889999997665544
Q ss_pred EEEEcCCcEEEEeecCCc--cceeeecccccccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccC
Q 002753 224 FVLYSNGQLMSCSVSKKG--LKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~--i~~w~~~~~~~~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~ 300 (884)
+...++.++...+.++.+ ..+-...+ ..| ..+. +.+-||++.+|+++.||.||||+.++ ...+..++-
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~----lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLky--- 291 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEIT----LKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKY--- 291 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEE----ecC-CCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhh---
Confidence 444555555544443321 11111111 122 2344 88899999999999999999999998 777888877
Q ss_pred CCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 002753 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 301 ~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~ 337 (884)
|.+.|++++|+||...+|+|++|+.|.+|+++
T Consensus 292 -----Hsagvn~vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 292 -----HSAGVNAVAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred -----hhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence 99999999999999999999999999999874
No 175
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=2.4e-10 Score=130.64 Aligned_cols=296 Identities=15% Similarity=0.184 Sum_probs=166.2
Q ss_pred eeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEe
Q 002753 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL 149 (884)
Q Consensus 70 ~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~ 149 (884)
-..+.|+|=...++++...-.+++||-+.+.....+.....+.-.+..+++ ++ .-|...+++++
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~l-------iN---------e~D~aLlLtas 1130 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLEL-------IN---------EQDDALLLTAS 1130 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeee-------ec---------ccchhheeeec
Confidence 356789999899999988889999999755543333222211111221111 01 11345678899
Q ss_pred cCCcEEEEecCCcccc--ceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEE
Q 002753 150 SDGSLYSISWKGEFYG--AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (884)
Q Consensus 150 ~~g~i~~~~w~~~~~~--~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s 227 (884)
.||.|++ |++-... ..++. ..| .+..+++...+ ..+.+ ++| --
T Consensus 1131 ~dGvIRI--wk~y~~~~~~~eLV--------Taw--~~Ls~~~~~~r------------~~~~v--~dW---------qQ 1175 (1387)
T KOG1517|consen 1131 SDGVIRI--WKDYADKWKKPELV--------TAW--SSLSDQLPGAR------------GTGLV--VDW---------QQ 1175 (1387)
T ss_pred cCceEEE--ecccccccCCceeE--------Eee--ccccccCccCC------------CCCee--eeh---------hh
Confidence 9999988 4432221 11110 011 11111110000 01111 122 22
Q ss_pred cCCcEEEEeecCCccceeeecccccccC--CCCcEE-EEEcC---CCCEEEEEecCCeEEEEEccCCC--cceEEEeecc
Q 002753 228 SNGQLMSCSVSKKGLKLAEFIKIDKELG--SGDAVC-ASIAP---EQQILAVGTRRGVVELYDLAESA--SLIRTVSLYD 299 (884)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~~~~~--h~~~v~-va~sp---~~~~la~g~~dg~v~lw~~~~~~--~~~~~l~~~~ 299 (884)
..|.++++ ++-..+++||..+..+... .....+ -+.++ .|+.||.|..||.||+||.+... ..+...+.
T Consensus 1176 ~~G~Ll~t-Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~-- 1252 (1387)
T KOG1517|consen 1176 QSGHLLVT-GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE-- 1252 (1387)
T ss_pred hCCeEEec-CCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc--
Confidence 45655554 4456788999886544311 111222 23333 48999999999999999997632 24445555
Q ss_pred CCCCCCCCcC--eEEEEECCCCCE-EEEEEcCCcEEEEeccCCeeEEE--ecccc--ccceeeeeecCCCCCCccceeec
Q 002753 300 WGYSMDDTGP--VSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMST--IRQIS--LSSISSPIVKPNQDCKYEPLMSG 372 (884)
Q Consensus 300 ~~~~~~h~~~--V~~l~~spdg~~-Lasg~~dg~v~vW~~~~~~l~~t--l~~~~--~~~v~s~~~s~~~~~~~~~l~sg 372 (884)
|+.. |..+.+-+.|.. |++|+.||.|++||+........ +..|. .+..+++..++.. ..+++|
T Consensus 1253 ------h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha----piiAsG 1322 (1387)
T KOG1517|consen 1253 ------HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA----PIIASG 1322 (1387)
T ss_pred ------cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCC----Ceeeec
Confidence 7766 999999998776 99999999999999987422111 11110 0124444444443 444444
Q ss_pred c--eeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeeccccccc
Q 002753 373 T--SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (884)
Q Consensus 373 ~--~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~ 450 (884)
+ .+++|+..|.++ .++.+. | .+.+
T Consensus 1323 s~q~ikIy~~~G~~l---------------------------------------~~~k~n--------------~-~F~~ 1348 (1387)
T KOG1517|consen 1323 SAQLIKIYSLSGEQL---------------------------------------NIIKYN--------------P-GFMG 1348 (1387)
T ss_pred CcceEEEEecChhhh---------------------------------------cccccC--------------c-cccc
Confidence 3 444444433221 111100 0 1111
Q ss_pred -CCCceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002753 451 -QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (884)
Q Consensus 451 -~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~ 483 (884)
..+.+.|++|+|.-..+|+|+.|.++ +|....+
T Consensus 1349 q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1349 QRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred CcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 12456899999999999999999999 9987654
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=8.7e-12 Score=144.43 Aligned_cols=230 Identities=17% Similarity=0.190 Sum_probs=155.4
Q ss_pred EEEcCCC----CEEEEEecCCeEEEEEccCC--C---cceEEEeeccCCCCCCCCcCeEEEEECCCCC-EEEEEEcCCcE
Q 002753 262 ASIAPEQ----QILAVGTRRGVVELYDLAES--A---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGL 331 (884)
Q Consensus 262 va~sp~~----~~la~g~~dg~v~lw~~~~~--~---~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~dg~v 331 (884)
++|.+.+ .+||.|..||.|.+||.... + ..+.+... |+|+|..+.|++.+. .||+|+.||.|
T Consensus 70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~--------h~G~V~gLDfN~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK--------HTGPVLGLDFNPFQGNLLASGADDGEI 141 (1049)
T ss_pred eeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc--------cCCceeeeeccccCCceeeccCCCCcE
Confidence 4454433 36999999999999998751 1 12333344 999999999999755 99999999999
Q ss_pred EEEeccCCeeEEEec-cccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcce----EEEEee--
Q 002753 332 TVWSVSGCRLMSTIR-QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER----VLIFSF-- 401 (884)
Q Consensus 332 ~vW~~~~~~l~~tl~-~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~----v~~~~~-- 401 (884)
.|||+..-..-.+.. ..-.+.|.+++|...- ...+++++ ...+||.+..+.+.....+..+ ++.+.+
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv---qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV---SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhh---hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC
Confidence 999997643322321 1124567888775432 14556665 7899999988776666555442 244444
Q ss_pred cceeecccCCC---CceeeeeeecCCeEEEEecCCCCceeEEEeecc-cccccCCCceEEEEEccCC-CEEEEEeCCceE
Q 002753 402 GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAASKDG-MFLAVAGLHGLI 476 (884)
Q Consensus 402 ~~~~~s~~~d~---~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p-~~~~~~~~~I~~va~S~dG-~~lavag~dg~i 476 (884)
...++.++.|. .+.+||+.+... | ..|.+|+--|.++.|++.+ ++|+++|+|+.+
T Consensus 219 aTql~~As~dd~~PviqlWDlR~ass--------------------P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASS--------------------PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCC--------------------chhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence 45555555433 678899887766 4 5677999999999999876 899999999999
Q ss_pred -EEEccCCcEEEecCccceeeeEEEEEEEeCC--EEEEEEEecCCCeEEEEEeeCC
Q 002753 477 -LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY 529 (884)
Q Consensus 477 -iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~--~lv~~~~~~~~~~~elr~y~~~ 529 (884)
+||.++++- .+.. ..+.--+..+.|... .++++.+ -+..+.+|+..
T Consensus 279 i~wN~~tgEv--l~~~-p~~~nW~fdv~w~pr~P~~~A~as----fdgkI~I~sl~ 327 (1049)
T KOG0307|consen 279 ICWNPNTGEV--LGEL-PAQGNWCFDVQWCPRNPSVMAAAS----FDGKISIYSLQ 327 (1049)
T ss_pred eEecCCCceE--eeec-CCCCcceeeeeecCCCcchhhhhe----eccceeeeeee
Confidence 999999752 1111 111112667788643 2444423 23566777764
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.27 E-value=4.2e-11 Score=123.31 Aligned_cols=194 Identities=10% Similarity=0.134 Sum_probs=134.4
Q ss_pred cCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccc----------cccCCCCcEE-EEEcCC-CCEEE
Q 002753 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAVC-ASIAPE-QQILA 272 (884)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~----------~~~~h~~~v~-va~sp~-~~~la 272 (884)
.+|+..+.+++|+|. +...+|+++.|-++++|+..... .+.||...|- ++|+|. .+.|+
T Consensus 78 ~GHt~~vLDi~w~Pf---------nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLl 148 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPF---------NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLL 148 (472)
T ss_pred cCccccccccccCcc---------CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHh
Confidence 578889999999773 45678888899999999865432 1268999888 999996 46888
Q ss_pred EEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccc
Q 002753 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 352 (884)
Q Consensus 273 ~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~ 352 (884)
+++.|.+|.+||+.+ ++.+.++. |..-|.+++|+.||.+|++.+.|+.|+|||...+.++..-.+|....
T Consensus 149 sag~Dn~v~iWnv~t-geali~l~---------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGT-GEALITLD---------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK 218 (472)
T ss_pred hccCCceEEEEeccC-CceeeecC---------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence 999999999999998 55444433 89999999999999999999999999999999999888776653222
Q ss_pred eeeeeecCCCCCCccceeecc------eeEEEecCCceEEEEecC-CcceEEEEee---cc--eeecccCCCCceeeeee
Q 002753 353 ISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEG-SSERVLIFSF---GK--CCLNRGVSGMTYARQVI 420 (884)
Q Consensus 353 v~s~~~s~~~~~~~~~l~sg~------~i~~W~~~~~~l~~~~~~-~~~~v~~~~~---~~--~~~s~~~d~~~~~w~l~ 420 (884)
-.-+.|-.++ ..+.+|- ++.+|++.+-+--..... .++.=+.|+| .. ..+.|-.|+.++.+.+.
T Consensus 219 ~~Raifl~~g----~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 219 PARAIFLASG----KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred cceeEEeccC----ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 2333454555 4444443 678898876432111111 1111133333 22 23455566666665544
Q ss_pred e
Q 002753 421 Y 421 (884)
Q Consensus 421 ~ 421 (884)
.
T Consensus 295 ~ 295 (472)
T KOG0303|consen 295 N 295 (472)
T ss_pred C
Confidence 3
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.26 E-value=2e-10 Score=115.50 Aligned_cols=226 Identities=13% Similarity=0.126 Sum_probs=151.2
Q ss_pred ecCeEEEEEc-cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecC-c-eeec
Q 002753 29 VNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE-K-SIQI 105 (884)
Q Consensus 29 pdg~lla~~t-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~-~-~~~~ 105 (884)
|+.+++|+.+ +.-|.|||+- .+.+-+++ |.-.-.++.-...+++|+|||..|+++ .+++|++|++.-.. . ..+.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaf-tG~lraSy-~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAF-TGKLRASY-RAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred CccceeeeccccCceeeeecc-ccccccch-hhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchh
Confidence 7788888775 5679999994 55444443 333334445555789999999999987 46789999984222 1 1110
Q ss_pred CCCCCCCceeeeeeeeeeccccccccceeEEEEeecC---CeEEEEecCCcEEEEecCCccccceeeeccCCCCccceee
Q 002753 106 GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN---KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (884)
Q Consensus 106 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~ 182 (884)
. ...++ .+..+.++|++... ..+.+++....+-++.|++....
T Consensus 198 t--------------~~~~k---~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----------------- 243 (406)
T KOG2919|consen 198 T--------------VTKGK---FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----------------- 243 (406)
T ss_pred h--------------hhccc---ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce-----------------
Confidence 0 00101 12244566665443 35677777777777777654321
Q ss_pred cccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeec-CCccceeeecccccc----cCCC
Q 002753 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE----LGSG 257 (884)
Q Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-d~~i~~w~~~~~~~~----~~h~ 257 (884)
..+.++++.|+.+.| .+||..+++++. +..|..||....... ..|.
T Consensus 244 -------------------~llggh~gGvThL~~----------~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv 294 (406)
T KOG2919|consen 244 -------------------QLLGGHGGGVTHLQW----------CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHV 294 (406)
T ss_pred -------------------eeecccCCCeeeEEe----------ccCcCeecccccCCCeEEEEeehhccchhhhhhhhc
Confidence 112467888998887 577777777664 445668998754321 2333
Q ss_pred C----cEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC
Q 002753 258 D----AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (884)
Q Consensus 258 ~----~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d 328 (884)
+ .+.....|++++||+|+.||.|++||+++.+..+..+.. |...|+.++++|-=-.+|+++..
T Consensus 295 ~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~--------~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 295 GDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN--------YSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc--------ccccccceecCcccceeeeccCc
Confidence 3 444677799999999999999999999986665555555 78889999999998888888753
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.26 E-value=1.1e-09 Score=108.69 Aligned_cols=216 Identities=18% Similarity=0.210 Sum_probs=153.6
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC--CCCEEEEEEcCCcEEE
Q 002753 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTV 333 (884)
Q Consensus 256 h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~dg~v~v 333 (884)
+.+.-|+.|.|++..+|+- .|..|.+|+++...+....+.. +.+.+|....++-+||| ||+.+++.++ ++++.
T Consensus 123 vg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~s---s~s~e~~~~ftsg~WspHHdgnqv~tt~d-~tl~~ 197 (370)
T KOG1007|consen 123 VGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLS---SESAEMRHSFTSGAWSPHHDGNQVATTSD-STLQF 197 (370)
T ss_pred hCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeecc---cccccccceecccccCCCCccceEEEeCC-CcEEE
Confidence 3445679999999998874 4889999999873332333322 12233566778899999 8999998875 99999
Q ss_pred EeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCc-eEEEEecCCcceEEEEee----ccee
Q 002753 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF----GKCC 405 (884)
Q Consensus 334 W~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~-~l~~~~~~~~~~v~~~~~----~~~~ 405 (884)
||+.+.....+++..+...|..+.|.|+. ...++++. .+++||.+.- ..+....+|...+|+++| ...+
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnk---q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNK---QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCc---eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 99999888888877556789999999985 24556665 8999998754 456677889999988888 5678
Q ss_pred ecccCCCCceeeeeeecCCeEEEEecCCCCce-------eEEEe--ecccccccCCCceEEEEEccCCC-EEEEEeCCce
Q 002753 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL-------KILHL--NLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGL 475 (884)
Q Consensus 406 ~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~-------~w~~~--~~p~~~~~~~~~I~~va~S~dG~-~lavag~dg~ 475 (884)
++++.|..+.+|....-....-+..++|.++. +-..+ ....+|..|...|.+++||.-.. .+|+-+.||.
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 89999999988875443322222222222211 11111 12347889999999999986554 5677799999
Q ss_pred EEEE
Q 002753 476 ILYD 479 (884)
Q Consensus 476 iiwd 479 (884)
++-+
T Consensus 355 viIs 358 (370)
T KOG1007|consen 355 VIIS 358 (370)
T ss_pred EEee
Confidence 8444
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.25 E-value=1.2e-09 Score=113.43 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=68.6
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEE
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~ 332 (884)
.+|.+-+. ++|+|++.++++|+.|.++++||+.. +.....+.. |..-|..++|.|-++++++-+.|...+
T Consensus 120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~d--------h~~yvqgvawDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDD--------HEHYVQGVAWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred cccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccc--------cccccceeecchhhhhhhhhccCcccc
Confidence 46777666 99999999999999999999999998 777777777 999999999999999999999999888
Q ss_pred EEeccCCee
Q 002753 333 VWSVSGCRL 341 (884)
Q Consensus 333 vW~~~~~~l 341 (884)
+.++...+.
T Consensus 191 ~~~~~~~~~ 199 (434)
T KOG1009|consen 191 GFSAKLKQV 199 (434)
T ss_pred eeeeeeeee
Confidence 887754433
No 181
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.25 E-value=2.6e-10 Score=124.25 Aligned_cols=238 Identities=13% Similarity=0.173 Sum_probs=150.1
Q ss_pred ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEE--EeeccCCCCCCCCcCeEEEEECCCC-CEEEEEEcC
Q 002753 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRT--VSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKS 328 (884)
Q Consensus 253 ~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~--l~~~~~~~~~~h~~~V~~l~~spdg-~~Lasg~~d 328 (884)
+..|..++. +++-|....|++++.|.++++||++. .++... ..+ |++.|.+++|.|+. ..+++|+.|
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s~l~G~~~~~G--------H~~SvkS~cf~~~n~~vF~tGgRD 166 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-SRLVGGRLNLG--------HTGSVKSECFMPTNPAVFCTGGRD 166 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeecc-ceeecceeecc--------cccccchhhhccCCCcceeeccCC
Confidence 478999998 99999778899999999999999998 665543 445 99999999999964 578999999
Q ss_pred CcEEEEeccCCe--eE---E-----Eecc---c-------------cccceee---eeecCCCCCCccceeecc----ee
Q 002753 329 RGLTVWSVSGCR--LM---S-----TIRQ---I-------------SLSSISS---PIVKPNQDCKYEPLMSGT----SM 375 (884)
Q Consensus 329 g~v~vW~~~~~~--l~---~-----tl~~---~-------------~~~~v~s---~~~s~~~~~~~~~l~sg~----~i 375 (884)
|.+.|||+.-.. .+ + ...+ + +...+.+ +.+..|+ ..+++++ .+
T Consensus 167 g~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe----~tlaSaga~D~~i 242 (720)
T KOG0321|consen 167 GEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE----STLASAGAADSTI 242 (720)
T ss_pred CcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc----ceeeeccCCCcce
Confidence 999999984322 00 0 0000 0 0122233 3333454 5666554 79
Q ss_pred EEEecCCceEEEEec--------CC---cceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEE
Q 002753 376 MQWDEYGYRLYAIEE--------GS---SERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (884)
Q Consensus 376 ~~W~~~~~~l~~~~~--------~~---~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~ 441 (884)
++||+.........+ -+ .-.+..|.. |.++.+.|.|++|..|++..-....
T Consensus 243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP--------------- 307 (720)
T KOG0321|consen 243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP--------------- 307 (720)
T ss_pred EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc---------------
Confidence 999997644322211 01 112233322 6777777889999999876654421
Q ss_pred eecccccccCCCc--eEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCC---EEEEEEEe
Q 002753 442 LNLPVSYISQNWP--VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK---IIVVCNYI 515 (884)
Q Consensus 442 ~~~p~~~~~~~~~--I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~---~lv~~~~~ 515 (884)
...+.++... -..-..||||.++++|+.|+.+ +|.+.+-.-... ..--+.+.|..++|... -+++| .
T Consensus 308 ---~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~--~l~Ght~eVt~V~w~pS~~t~v~Tc--S 380 (720)
T KOG0321|consen 308 ---VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA--LLLGHTREVTTVRWLPSATTPVATC--S 380 (720)
T ss_pred ---hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh--hhhCcceEEEEEeeccccCCCceee--c
Confidence 1222232111 1234679999999999999999 999876421110 01113356788899742 23444 2
Q ss_pred cCCCeEEEEEeeC
Q 002753 516 DSSNTYELLFYPR 528 (884)
Q Consensus 516 ~~~~~~elr~y~~ 528 (884)
+++.+++|..
T Consensus 381 ---dD~~~kiW~l 390 (720)
T KOG0321|consen 381 ---DDFRVKIWRL 390 (720)
T ss_pred ---cCcceEEEec
Confidence 3355666655
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.25 E-value=6.5e-09 Score=106.93 Aligned_cols=127 Identities=20% Similarity=0.272 Sum_probs=96.0
Q ss_pred cceeeecccccc------cCCCCcEE-EEEcCCCCEEEEE--ecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEE
Q 002753 242 LKLAEFIKIDKE------LGSGDAVC-ASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC 312 (884)
Q Consensus 242 i~~w~~~~~~~~------~~h~~~v~-va~sp~~~~la~g--~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~ 312 (884)
+.++|..+-+.+ ..+...+| .++|+.+.++|.= ...|.|.|||+.+ -+.+.++.. |.+++.+
T Consensus 108 IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a--------H~~~lAa 178 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA--------HKGPLAA 178 (391)
T ss_pred EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe--------cCCceeE
Confidence 555555543332 34566677 7888888899853 3458999999988 777778888 9999999
Q ss_pred EEECCCCCEEEEEEcCCc-EEEEeccCCeeEEEeccc-cccceeeeeecCCCCCCccceeecc---eeEEEecC
Q 002753 313 IAWTPDNSAFAVGWKSRG-LTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (884)
Q Consensus 313 l~~spdg~~Lasg~~dg~-v~vW~~~~~~l~~tl~~~-~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~ 381 (884)
++|+|||.+||++++.|+ |||+++..|+.+..++-. -...+.+++|+|++ ..+...+ ++.++..+
T Consensus 179 lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds----~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 179 LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS----QFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC----CeEEEecCCCeEEEEEec
Confidence 999999999999999987 699999999999998753 12467889999997 5554332 55555443
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.24 E-value=5.7e-10 Score=110.63 Aligned_cols=247 Identities=14% Similarity=0.131 Sum_probs=152.5
Q ss_pred EEEEe-cCeEEEEEcc--------CeEEEEecCCceeEEEEEeeChHhh-----hhccceeEEEEcCCccEEEEEecCcE
Q 002753 25 IYFKV-NNGLLLIASP--------CHIELWSSSQHKVRLGKYKRDSESV-----QREGENLQAVWSPDTKLIAVVTSSLY 90 (884)
Q Consensus 25 v~fsp-dg~lla~~t~--------~~v~IW~~~~~~~~l~~~~r~~~sl-----~~~G~~~~v~wsPDg~~Lav~t~~g~ 90 (884)
++-+| |.++||++.. ....||...++..+ +-..+.+.+ +..|.+.++.|-|++..+|+-+ ++.
T Consensus 69 las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~--S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~ 145 (370)
T KOG1007|consen 69 LASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ--SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNN 145 (370)
T ss_pred hhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc--cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCc
Confidence 34444 4568888742 36889998655433 111122222 3468889999999999999887 677
Q ss_pred EEEEEEEecCceee-cCCCCCC--CceeeeeeeeeeccccccccceeEEEEee-cCCeEEEEecCCcEEEEecCCccccc
Q 002753 91 LHIFKVQITEKSIQ-IGGKQPS--GLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEFYGA 166 (884)
Q Consensus 91 l~l~~l~~~~~~~~-~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~llv~~~~g~i~~~~w~~~~~~~ 166 (884)
|.+|+++.+..... ....... ...+.+.. -++ .+...+.++.+++++.|+..... ..
T Consensus 146 i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~------------------WspHHdgnqv~tt~d~tl~~~D~RT~~-~~ 206 (370)
T KOG1007|consen 146 IVLWSLDESSKIVAEVLSSESAEMRHSFTSGA------------------WSPHHDGNQVATTSDSTLQFWDLRTMK-KN 206 (370)
T ss_pred eEEEEcccCcchheeecccccccccceecccc------------------cCCCCccceEEEeCCCcEEEEEccchh-hh
Confidence 99999986654221 1111100 00011111 111 12345667788898875443211 11
Q ss_pred eeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCc-EEEEeecCCcccee
Q 002753 167 FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLA 245 (884)
Q Consensus 167 ~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~i~~w 245 (884)
.. | -..|...+++++|+| +-+ +++++.+|+.+++|
T Consensus 207 ~s----------I------------------------~dAHgq~vrdlDfNp----------nkq~~lvt~gDdgyvriW 242 (370)
T KOG1007|consen 207 NS----------I------------------------EDAHGQRVRDLDFNP----------NKQHILVTCGDDGYVRIW 242 (370)
T ss_pred cc----------h------------------------hhhhcceeeeccCCC----------CceEEEEEcCCCccEEEE
Confidence 10 0 123455688888754 433 56777889999999
Q ss_pred eeccccc----ccCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEccCCCc--------------------ceEEEeecc
Q 002753 246 EFIKIDK----ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESAS--------------------LIRTVSLYD 299 (884)
Q Consensus 246 ~~~~~~~----~~~h~~~v~-va~sp~-~~~la~g~~dg~v~lw~~~~~~~--------------------~~~~l~~~~ 299 (884)
|....+. +.+|...+. +.|||. .++|.+|+.|..|.+|....-.. ..+.+....
T Consensus 243 D~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~ 322 (370)
T KOG1007|consen 243 DTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQ 322 (370)
T ss_pred eccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccc
Confidence 9886532 378999998 999996 57888999999999998753110 000011111
Q ss_pred CCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEecc
Q 002753 300 WGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~ 337 (884)
+..-..|...|.+++||. |--.+|+-+.||.+.|=++.
T Consensus 323 l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 323 LETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 111225999999999986 77788999999988776654
No 184
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.23 E-value=2.5e-09 Score=124.46 Aligned_cols=219 Identities=11% Similarity=0.098 Sum_probs=127.3
Q ss_pred eEEEE-cCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEe
Q 002753 71 LQAVW-SPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL 149 (884)
Q Consensus 71 ~~v~w-sPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~ 149 (884)
..++- +|++.++++++.||+|++|+...-... +. .......+.. .+..........+++.+++++
T Consensus 1052 ~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~------~~--s~rS~ltys~------~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1052 IKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE------GG--SARSELTYSP------EGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred cceeecCCCCceEEEecCCceEEEeeehhhhcC------cc--eeeeeEEEec------cCCceEEEEeccCCCeEEEEc
Confidence 34444 566699999999999999998532211 00 0001111111 111122223345678999999
Q ss_pred cCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcC
Q 002753 150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN 229 (884)
Q Consensus 150 ~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~d 229 (884)
+||.|+....+........ . .+.++......+.+++|.... ..+
T Consensus 1118 ~DG~v~~~~id~~~~~~~~-------~---------------------~~~ri~n~~~~g~vv~m~a~~--------~~~ 1161 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRV-------A---------------------TQVRIPNLKKDGVVVSMHAFT--------AIV 1161 (1431)
T ss_pred CCCeEEEEEccccccccce-------e---------------------eeeecccccCCCceEEeeccc--------ccc
Confidence 9999998877643211110 0 011122233455566765321 122
Q ss_pred Cc-EEEEeecCCccceeeecccccc------cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCC
Q 002753 230 GQ-LMSCSVSKKGLKLAEFIKIDKE------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (884)
Q Consensus 230 G~-~~~~~~~d~~i~~w~~~~~~~~------~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~ 302 (884)
+. .++.+..-+.+..||....... ..|+-.+.++++|.++++++|+..|.+.+||++- ...+..++-.
T Consensus 1162 ~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P---- 1236 (1431)
T KOG1240|consen 1162 QSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHP---- 1236 (1431)
T ss_pred cceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCc----
Confidence 22 3333334444556665543221 3455555699999999999999999999999987 5555544431
Q ss_pred CCCCCcCeEEEEECC---CCCEEEEEE--cCCcEEEEeccCCeeEEEecc
Q 002753 303 SMDDTGPVSCIAWTP---DNSAFAVGW--KSRGLTVWSVSGCRLMSTIRQ 347 (884)
Q Consensus 303 ~~~h~~~V~~l~~sp---dg~~Lasg~--~dg~v~vW~~~~~~l~~tl~~ 347 (884)
+..+++.+...| .....++++ ..+.+.+|++.+|.+..++..
T Consensus 1237 ---~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1237 ---ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred ---ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 345566555554 345555544 468899999999876666653
No 185
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.21 E-value=6.9e-11 Score=126.19 Aligned_cols=144 Identities=18% Similarity=0.304 Sum_probs=105.3
Q ss_pred CccEEEEEEcCCc-ceEEEEEcCCcEEEEee-----c---------CC---ccceeeeccc----ccccCCCCcEE-EEE
Q 002753 208 SSAIIWLELCLPM-RLLFVLYSNGQLMSCSV-----S---------KK---GLKLAEFIKI----DKELGSGDAVC-ASI 264 (884)
Q Consensus 208 ~~~i~~i~~~~~~-~~~~~~s~dG~~~~~~~-----~---------d~---~i~~w~~~~~----~~~~~h~~~v~-va~ 264 (884)
++.++++.|-+.. ..+++...+|.++.--. . ++ .+..|-.... .+|.--..++. .+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4678888886654 46677777777665311 0 00 0011110000 01111233565 899
Q ss_pred cCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEE
Q 002753 265 APEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (884)
Q Consensus 265 sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~t 344 (884)
||||++||+-++||.+||||.++ .+++-..+. .-|...||+|||||+++++|++|--|.||++..++.++.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkS--------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDT-QELLGVMKS--------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred cCCCceEEEEecCceEEEeeccH-HHHHHHHHh--------hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 99999999999999999999987 555555554 467899999999999999999999999999999999999
Q ss_pred eccccccceeeeeecCC
Q 002753 345 IRQISLSSISSPIVKPN 361 (884)
Q Consensus 345 l~~~~~~~v~s~~~s~~ 361 (884)
-++| .+.|+.++|+|-
T Consensus 370 GqGH-kSWVs~VaFDpy 385 (636)
T KOG2394|consen 370 GQGH-KSWVSVVAFDPY 385 (636)
T ss_pred cccc-ccceeeEeeccc
Confidence 8888 899999999875
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.3e-07 Score=107.61 Aligned_cols=298 Identities=12% Similarity=0.122 Sum_probs=169.1
Q ss_pred CCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEE
Q 002753 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (884)
Q Consensus 255 ~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW 334 (884)
+|....++.+++.|.+.+..- +..+.+|++.+.. +..... .....|+..++|.++||+++++|+|..||.|.+|
T Consensus 159 ~~~~~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~---~~~~~~--~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw 232 (792)
T KOG1963|consen 159 EHQEPKSIVDNNSGEFKGIVH-MCKIHIYFVPKHT---KHTSSR--DITVHHTFNITCVALSPNERYLAAGDSDGRILVW 232 (792)
T ss_pred hhcCCccEEEcCCceEEEEEE-eeeEEEEEecccc---eeeccc--hhhhhhcccceeEEeccccceEEEeccCCcEEEE
Confidence 343355688999888776644 5567888887622 211111 1223488889999999999999999999999999
Q ss_pred eccCC----eeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceE--EEEee-cce
Q 002753 335 SVSGC----RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKC 404 (884)
Q Consensus 335 ~~~~~----~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~ 404 (884)
.-++. .....+..| .+.|++++|+++| ..+.||+ -...|..++++. ..+..-...| ..+++ +..
T Consensus 233 ~d~~~~~~~~t~t~lHWH-~~~V~~L~fS~~G----~~LlSGG~E~VLv~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 233 RDFGSSDDSETCTLLHWH-HDEVNSLSFSSDG----AYLLSGGREGVLVLWQLETGKK-QFLPRLGSPILHIVVSPDSDL 306 (792)
T ss_pred eccccccccccceEEEec-ccccceeEEecCC----ceEeecccceEEEEEeecCCCc-ccccccCCeeEEEEEcCCCCe
Confidence 88762 123455666 6789999999999 9999998 667898887662 2222223344 22333 333
Q ss_pred eecccCCCCceeeeeeecCCeEEEEecCCCCce-eEEEeecc--cccccCCCceEEEEEccCCCEEEEEeCCceE-EEEc
Q 002753 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL-KILHLNLP--VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 405 ~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~-~w~~~~~p--~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~ 480 (884)
......|+ .+.+....+.... ....++.+ ..-..-.+-.+.++++|--+.++--++.|.+ .||+
T Consensus 307 ~sl~~~DN------------qI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 307 YSLVLEDN------------QIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred EEEEecCc------------eEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence 33333343 3333333222111 11222222 1111223446778999987888889999999 9999
Q ss_pred cCCcEE-Ee---c-Ccccee-eeE--EEEEE--EeCCEEEEEEEe-c----CCCeEEEEEeeCC-CCCCcceEEEEecCC
Q 002753 481 RQKKWR-VF---G-DITQEQ-KIQ--SKGLL--WLGKIIVVCNYI-D----SSNTYELLFYPRY-HLDQSSLLCRKSLLA 544 (884)
Q Consensus 481 ~s~~w~-~f---~-~~~~e~-~~~--v~~~~--W~~~~lv~~~~~-~----~~~~~elr~y~~~-~l~~~~~l~~~~~~~ 544 (884)
.+.+-- .+ . |...+. ... ++... -++..+.+.-.. + .++...|++|-+. +.-+-.+..+...|.
T Consensus 375 ~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH 454 (792)
T KOG1963|consen 375 YTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPH 454 (792)
T ss_pred cccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCC
Confidence 876421 11 1 111111 111 22111 124444433221 1 2346678999886 333333333444453
Q ss_pred ccE-----EEEccC-CEEEEEEcCCeEEEEEEEEeccc
Q 002753 545 KPI-----VMDVYE-DYILVTYRPFDVHIFHVKLFGEL 576 (884)
Q Consensus 545 ~~~-----~~~~~~-~~llv~~~~~~i~i~~~~~~~~~ 576 (884)
... ..+... +..+-+..|+.+++|-+.-++++
T Consensus 455 ~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~ 492 (792)
T KOG1963|consen 455 GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI 492 (792)
T ss_pred CceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence 221 112222 23344557999999988644443
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.21 E-value=1.4e-08 Score=111.73 Aligned_cols=267 Identities=14% Similarity=0.168 Sum_probs=149.6
Q ss_pred EEEeecCCccceeeecccccc------cCCCCcEEEEEcCCCCEEEEEe-cCCeEEEEEccCCCcceEEEeeccCCCCCC
Q 002753 233 MSCSVSKKGLKLAEFIKIDKE------LGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (884)
Q Consensus 233 ~~~~~~d~~i~~w~~~~~~~~------~~h~~~v~va~sp~~~~la~g~-~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~ 305 (884)
+++...++.+.+|+.....++ .....+..++++|++++|++++ .++.|.+|+++..+. +.......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~~~~------ 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAAESP------ 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEeeeec------
Confidence 344445566666665421111 1123344589999999887664 578999999974233 22222111
Q ss_pred CCcCeEEEEECCCCCEEEEEEc-CCcEEEEeccC-Ce---eEEEeccccccceeeeeecCCCCCCccceee-c---ceeE
Q 002753 306 DTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSG-CR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMS-G---TSMM 376 (884)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~-dg~v~vW~~~~-~~---l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~s-g---~~i~ 376 (884)
..+....++++|||++|+++.. ++.+.+|++.. +. ....+.+ ......++++|++ ..+.. . ..+.
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g----~~l~v~~~~~~~v~ 151 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDN----RTLWVPCLKEDRIR 151 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCC----CEEEEeeCCCCEEE
Confidence 2334678999999998887764 78999999963 22 2222222 2234567788887 55532 2 2788
Q ss_pred EEecCCceEEE--------EecCCcceEEEEee-cceeecccC-CCCceeeeeeecCCeEEEEecCCCCceeEEEe-ecc
Q 002753 377 QWDEYGYRLYA--------IEEGSSERVLIFSF-GKCCLNRGV-SGMTYARQVIYGEDRLLVVQSEDTDELKILHL-NLP 445 (884)
Q Consensus 377 ~W~~~~~~l~~--------~~~~~~~~v~~~~~-~~~~~s~~~-d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~-~~p 445 (884)
+|+..+...+. ...+...+-..|++ ++.+...+. ++++.+|++......+.. .+.+ ..|
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~----------~~~~~~~p 221 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC----------VQTLDMMP 221 (330)
T ss_pred EEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE----------EEEEecCC
Confidence 99886532221 11121122255666 666655544 788888887643222111 1111 123
Q ss_pred cccccCCCceEEEEEccCCCEEEEEeC-CceE-EEEccC--CcEEEecCccceeeeEEEEEEE--eCCEEEEEEEecCCC
Q 002753 446 VSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQ--KKWRVFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSN 519 (884)
Q Consensus 446 ~~~~~~~~~I~~va~S~dG~~lavag~-dg~i-iwd~~s--~~w~~f~~~~~e~~~~v~~~~W--~~~~lv~~~~~~~~~ 519 (884)
..+.+..++ ..++++|||++++++.+ ++.+ +|++.+ +.++..+...-. ...+++.+ .+..+++++. .
T Consensus 222 ~~~~~~~~~-~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~----~ 294 (330)
T PRK11028 222 ADFSDTRWA-ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQ----K 294 (330)
T ss_pred CcCCCCccc-eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEc----c
Confidence 333333333 46899999999999965 5777 999854 344433211111 01234454 3667777643 2
Q ss_pred eEEEEEeeCC
Q 002753 520 TYELLFYPRY 529 (884)
Q Consensus 520 ~~elr~y~~~ 529 (884)
...+.+|..+
T Consensus 295 ~~~v~v~~~~ 304 (330)
T PRK11028 295 SHHISVYEID 304 (330)
T ss_pred CCcEEEEEEc
Confidence 3467777664
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=7e-10 Score=126.22 Aligned_cols=233 Identities=12% Similarity=0.060 Sum_probs=139.0
Q ss_pred CeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecC---cEEEEEEEEecCceeecCCCCCCCceee
Q 002753 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (884)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~---g~l~l~~l~~~~~~~~~~~~~~~~~~l~ 116 (884)
.+|.|||.+ ...+ ..+.+ ..+.+.+.+|||||+.||.++.+ ..|.+|++..+......
T Consensus 184 ~~i~i~d~d-g~~~-~~lt~------~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~----------- 244 (429)
T PRK01742 184 YEVRVADYD-GFNQ-FIVNR------SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA----------- 244 (429)
T ss_pred EEEEEECCC-CCCc-eEecc------CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------
Confidence 578999985 3221 11111 12456789999999999987653 36888988643321110
Q ss_pred eeeeeeeccccccccceeEEEEeecCCeEEEEe-cCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecC
Q 002753 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (884)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~-~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~ 195 (884)
. ..+... ..++++|++.++.+. .+|...++.|+........
T Consensus 245 ----~------~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~--------------------------- 286 (429)
T PRK01742 245 ----S------FRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ--------------------------- 286 (429)
T ss_pred ----c------CCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe---------------------------
Confidence 0 011111 125678888887765 5777776666543221111
Q ss_pred CCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEee-cCCccceeeecccc---cccCCCCcEEEEEcCCCCEE
Q 002753 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKID---KELGSGDAVCASIAPEQQIL 271 (884)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~d~~i~~w~~~~~~---~~~~h~~~v~va~sp~~~~l 271 (884)
+..+...+.+ ..++|||+.++..+ .++..++|...... ...++.. .+.+|+|+|+.|
T Consensus 287 --------lt~~~~~~~~----------~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~i 347 (429)
T PRK01742 287 --------LTSGAGNNTE----------PSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTL 347 (429)
T ss_pred --------eccCCCCcCC----------EEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEE
Confidence 0011111222 34588888666554 45667777653211 1123332 347899999999
Q ss_pred EEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc--CCeeEEEecccc
Q 002753 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--GCRLMSTIRQIS 349 (884)
Q Consensus 272 a~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~--~~~l~~tl~~~~ 349 (884)
++++.++. .+||+.+ ++.. .+.. + ....+++|+|||+.|+.++.+++..+|.+. .+....++..|
T Consensus 348 a~~~~~~i-~~~Dl~~-g~~~-~lt~--------~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~- 414 (429)
T PRK01742 348 VMINGDNV-VKQDLTS-GSTE-VLSS--------T-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS- 414 (429)
T ss_pred EEEcCCCE-EEEECCC-CCeE-EecC--------C-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC-
Confidence 98887764 4589876 4432 2222 1 123457899999999999999998888763 45567777665
Q ss_pred ccceeeeeecCC
Q 002753 350 LSSISSPIVKPN 361 (884)
Q Consensus 350 ~~~v~s~~~s~~ 361 (884)
...+..++|+|-
T Consensus 415 ~g~~~~p~wsp~ 426 (429)
T PRK01742 415 DGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCcccCCC
Confidence 456777788764
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=3.8e-10 Score=114.61 Aligned_cols=104 Identities=15% Similarity=0.254 Sum_probs=82.6
Q ss_pred CCcEEEEeecCCccceeeecccccc-----cCCC--CcEEEEEcCCCCEEEEEec----CCeEEEEEccCCCcceEEEee
Q 002753 229 NGQLMSCSVSKKGLKLAEFIKIDKE-----LGSG--DAVCASIAPEQQILAVGTR----RGVVELYDLAESASLIRTVSL 297 (884)
Q Consensus 229 dG~~~~~~~~d~~i~~w~~~~~~~~-----~~h~--~~v~va~sp~~~~la~g~~----dg~v~lw~~~~~~~~~~~l~~ 297 (884)
.+..+.+++.||++++||.....+. .++. .-+|++.+.+++.+++|.. |-.|.+||++...++++.+..
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e 162 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE 162 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence 4567778889999999998865432 3444 3456888889999999964 678999999985554665544
Q ss_pred ccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccCC
Q 002753 298 YDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC 339 (884)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~~ 339 (884)
.|..-|++++|.| |-..|++|+-||-+.++|+..-
T Consensus 163 -------SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 163 -------SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred -------hccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 3999999999999 6789999999999999999764
No 190
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.19 E-value=5.2e-09 Score=105.63 Aligned_cols=233 Identities=11% Similarity=0.250 Sum_probs=137.0
Q ss_pred EEEEecCeEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhcc-ceeEEEEcCCccEEEEEecC-------cEEEEEEE
Q 002753 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSS-------LYLHIFKV 96 (884)
Q Consensus 25 v~fspdg~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wsPDg~~Lav~t~~-------g~l~l~~l 96 (884)
++|+-|..-||+++++..+||+++ |.-..+ .|. ....| .++.+-|+ +.+||...+. +.|.|||=
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~-P~ke~~--~r~---~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCD-PFKESA--SRQ---FIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred EEEccCCceEEEEecCceEEEecC-chhhhh--hhc---cccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEec
Confidence 789999999999999999999996 722111 111 11112 11223343 3455554322 46888882
Q ss_pred EecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCC
Q 002753 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (884)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~ 176 (884)
... .++..+ .+ ...|+++...++++++... +.|.++.+..+......++
T Consensus 83 ~k~-------------~~i~el--~f---------~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~e------ 131 (346)
T KOG2111|consen 83 LKE-------------RCIIEL--SF---------NSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIE------ 131 (346)
T ss_pred ccC-------------cEEEEE--Ee---------ccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeee------
Confidence 110 111111 11 1236677777888877664 5566666654332111100
Q ss_pred ccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccc-----
Q 002753 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----- 251 (884)
Q Consensus 177 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~----- 251 (884)
.......+- +.++..+..+.+.|. ...|.+++-+....+
T Consensus 132 ---------------------------t~~NPkGlC--~~~~~~~k~~LafPg-------~k~GqvQi~dL~~~~~~~p~ 175 (346)
T KOG2111|consen 132 ---------------------------TRSNPKGLC--SLCPTSNKSLLAFPG-------FKTGQVQIVDLASTKPNAPS 175 (346)
T ss_pred ---------------------------cccCCCceE--eecCCCCceEEEcCC-------CccceEEEEEhhhcCcCCce
Confidence 000000111 122222222222221 123444444433221
Q ss_pred cccCCCCcEE-EEEcCCCCEEEEEecCCe-EEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCC
Q 002753 252 KELGSGDAVC-ASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (884)
Q Consensus 252 ~~~~h~~~v~-va~sp~~~~la~g~~dg~-v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg 329 (884)
....|...+. ++.|-+|.++||++..|| |||||..+ +..+..++... ....|.|++||||+.+||++++.|
T Consensus 176 ~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~------d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 176 IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGV------DRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCC------chheEEEEEeCCCccEEEEEcCCC
Confidence 2367877765 999999999999999997 69999998 77777766411 345699999999999999999999
Q ss_pred cEEEEeccCC
Q 002753 330 GLTVWSVSGC 339 (884)
Q Consensus 330 ~v~vW~~~~~ 339 (884)
++.|+.+...
T Consensus 249 TlHiF~l~~~ 258 (346)
T KOG2111|consen 249 TLHIFSLRDT 258 (346)
T ss_pred eEEEEEeecC
Confidence 9999998764
No 191
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=1.4e-10 Score=125.01 Aligned_cols=216 Identities=15% Similarity=0.226 Sum_probs=137.8
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCC-------CcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEE
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~-------~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 325 (884)
..|.+.+. .+|.|....|++|+.||++++|++.+. .+.+.++.+ |.|+|.|++.++.|..+.+|
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra--------H~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA--------HEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec--------ccCceEEEEecCCceEEEee
Confidence 45778888 899999999999999999999999331 134567777 99999999999999999999
Q ss_pred EcCCcEEEEeccC----------CeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceE--EEEec
Q 002753 326 WKSRGLTVWSVSG----------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL--YAIEE 390 (884)
Q Consensus 326 ~~dg~v~vW~~~~----------~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l--~~~~~ 390 (884)
+-||+|+.|++.. ..+..++.|| .+.|..+++|+.. ..+++.+ +++.|.+..... +..-.
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh-tdavw~l~~s~~~----~~Llscs~DgTvr~w~~~~~~~~~f~~~~ 437 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH-TDAVWLLALSSTK----DRLLSCSSDGTVRLWEPTEESPCTFGEPK 437 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceecc-ccceeeeeecccc----cceeeecCCceEEeeccCCcCccccCCcc
Confidence 9999999996531 1244566777 7889999999886 6666664 999999887666 11111
Q ss_pred CCcceEEEEee--cc---eeecccC---------------------CCCc-----eeeeeeecCCeEEEEecCCCCc--e
Q 002753 391 GSSERVLIFSF--GK---CCLNRGV---------------------SGMT-----YARQVIYGEDRLLVVQSEDTDE--L 437 (884)
Q Consensus 391 ~~~~~v~~~~~--~~---~~~s~~~---------------------d~~~-----~~w~l~~~~~~~~i~~~~~~~~--~ 437 (884)
.+.-. ..+++ .+ .+++... +... ....+.+....+.+....+... +
T Consensus 438 e~g~P-lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 438 EHGYP-LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF 516 (577)
T ss_pred ccCCc-ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence 11111 22222 11 0010000 0000 0000001111111100000000 0
Q ss_pred eEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002753 438 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (884)
Q Consensus 438 ~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~ 483 (884)
.....++......|-..+.++|+.|+|-+|++++.||.+ +|+...+
T Consensus 517 dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 517 DNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 112223344556777889999999999999999999999 9988654
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.19 E-value=4.8e-09 Score=117.94 Aligned_cols=229 Identities=24% Similarity=0.363 Sum_probs=166.3
Q ss_pred EEcCCcEEEEeecCCccceeeecccc-cc---cC-CCCcEE-EEE-cCCCC-EEEEEec-CCeEEEEEccCCCcceEEEe
Q 002753 226 LYSNGQLMSCSVSKKGLKLAEFIKID-KE---LG-SGDAVC-ASI-APEQQ-ILAVGTR-RGVVELYDLAESASLIRTVS 296 (884)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~-~~---~~-h~~~v~-va~-sp~~~-~la~g~~-dg~v~lw~~~~~~~~~~~l~ 296 (884)
+.+++..++.+..++.+.+|+..... .. .+ +...+. +.+ ++++. .++..+. |+.+++|+..........+.
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 152 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE 152 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe
Confidence 34556666655566666677665543 11 22 221333 455 88887 5555444 99999999875235555666
Q ss_pred eccCCCCCCCCcCeEEEEECCCCCEEEEEEc-CCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCcc-ceeecc-
Q 002753 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMSGT- 373 (884)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~-~l~sg~- 373 (884)
. |...|.+++|+|++..+++++. |+.+++|++..+....++.+| ...+..++++|++ . .++++.
T Consensus 153 ~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~~~~~~~~ 219 (466)
T COG2319 153 G--------HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDG----GLLIASGSS 219 (466)
T ss_pred c--------CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcCCc----ceEEEEecC
Confidence 6 8999999999999999999885 999999999988888888876 7789999999887 4 344312
Q ss_pred --eeEEEecCCceEEE-EecCCcce-EEEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeeccccc
Q 002753 374 --SMMQWDEYGYRLYA-IEEGSSER-VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (884)
Q Consensus 374 --~i~~W~~~~~~l~~-~~~~~~~~-v~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~ 448 (884)
.+.+|+...+.... ...+|... +..+++ +..+++++.|+.+++|+.......+ ..+
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-------------------~~~ 280 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL-------------------RTL 280 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEE-------------------EEE
Confidence 67799887777776 56676665 445666 5577789999999999977655411 111
Q ss_pred ccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE
Q 002753 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (884)
Q Consensus 449 ~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~ 486 (884)
.+|..+|.+++|+|++..+++++.|+.+ +|+..++...
T Consensus 281 ~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319 (466)
T ss_pred ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceE
Confidence 5678899999999999999999999888 9998877633
No 193
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.17 E-value=1.7e-05 Score=97.26 Aligned_cols=438 Identities=14% Similarity=0.165 Sum_probs=208.3
Q ss_pred hccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEE--EeecCC
Q 002753 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNK 143 (884)
Q Consensus 66 ~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~--i~~~~~ 143 (884)
..+.++++.+-+|...+++++++|.|.++....+..... + .. .+.-+..|.| .++|.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~----------~-----E~-----VG~vd~GI~a~~WSPD~E 133 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE----------I-----EI-----VGSVDSGILAASWSPDEE 133 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce----------e-----EE-----EEEEcCcEEEEEECCCcC
Confidence 357889999999999999999999999885532111000 0 00 0111223444 467788
Q ss_pred eEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCC--Cccee--cCCCccccccccCCCccEEEEEEcCC
Q 002753 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN--GLASV--DTSGAFVSDHKFPISSAIIWLELCLP 219 (884)
Q Consensus 144 ~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~--~l~~~--~~~~~~~~~~~~~~~~~i~~i~~~~~ 219 (884)
.+++.|.+|.+..++-+-+...+.++.....+....-.++ |..- |+--. +......+.+... +.....+.+ .+
T Consensus 134 lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVG-WGkKeTQF~Gs~gK~aa~~~~~p~~~-~~d~~~~s~-dd 210 (928)
T PF04762_consen 134 LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVG-WGKKETQFHGSAGKAAARQLRDPTVP-KVDEGKLSW-DD 210 (928)
T ss_pred EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeec-cCcccCccCcchhhhhhhhccCCCCC-ccccCcccc-CC
Confidence 8999999998888764433333332221111110000000 1100 11000 0000000000000 000001111 11
Q ss_pred cceEEEEEcCCcEEEEeec---C---Cccceeeecccccc--cCCCCcE--EEEEcCCCCEEEEEec---CCeEEEEEcc
Q 002753 220 MRLLFVLYSNGQLMSCSVS---K---KGLKLAEFIKIDKE--LGSGDAV--CASIAPEQQILAVGTR---RGVVELYDLA 286 (884)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~---d---~~i~~w~~~~~~~~--~~h~~~v--~va~sp~~~~la~g~~---dg~v~lw~~~ 286 (884)
....+..-.||+++|+++- . ..+++|+-. +... ....+.. +++|.|.|++||+... .-.|..|.-+
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence 2223334578888777664 2 345677644 2111 1111222 3799999999999765 2456666533
Q ss_pred CCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee--EEEeccccccceeeeeecCCCCC
Q 002753 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDC 364 (884)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l--~~tl~~~~~~~v~s~~~s~~~~~ 364 (884)
|-.-..+... . ......|..++|++|+..||+..+| .|.+|...+..- .+.+. |+...
T Consensus 290 --GLrhgeF~l~---~-~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~-----------~~~~~-- 349 (928)
T PF04762_consen 290 --GLRHGEFTLR---F-DPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIR-----------FSSSE-- 349 (928)
T ss_pred --CcEeeeEecC---C-CCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEE-----------ccCCC--
Confidence 2111122221 1 0145679999999999999998875 499999877642 22221 11111
Q ss_pred CccceeecceeEEEecCCceEEEEecCCcceEEEEeecceee-ccc---CC-CCceeeeeeecCCeEEEEec---CCCCc
Q 002753 365 KYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCL-NRG---VS-GMTYARQVIYGEDRLLVVQS---EDTDE 436 (884)
Q Consensus 365 ~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~-s~~---~d-~~~~~w~l~~~~~~~~i~~~---~~~~~ 436 (884)
+.....|+++....+..... .+.+..+.+.-... +.+ .| +.+- +.. ++++.+..= .-.|.
T Consensus 350 -------~~~~~~Wdpe~p~~L~v~t~-~g~~~~~~~~~~v~~s~~~~~~D~g~va---VID-G~~lllTpf~~a~VPPP 417 (928)
T PF04762_consen 350 -------SVNFVKWDPEKPLRLHVLTS-NGQYEIYDFAWDVSRSPGSSPNDNGTVA---VID-GNKLLLTPFRRAVVPPP 417 (928)
T ss_pred -------CCCceEECCCCCCEEEEEec-CCcEEEEEEEEEEEecCCCCccCceEEE---EEe-CCeEEEecccccCCCch
Confidence 01226788765544443322 13343333311111 100 11 1111 111 222222210 00112
Q ss_pred eeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC-cEE----EecCc---------cce-eeeEEE
Q 002753 437 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWR----VFGDI---------TQE-QKIQSK 500 (884)
Q Consensus 437 ~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~-~w~----~f~~~---------~~e-~~~~v~ 500 (884)
+....+ .-..+|.+++|++++..+|+-..||.+ +|....+ .|. .+... ..+ .....+
T Consensus 418 Ms~~~l-------~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (928)
T PF04762_consen 418 MSSYEL-------ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLR 490 (928)
T ss_pred HhceEE-------cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEE
Confidence 222222 234689999999999989999999987 8885443 231 01000 001 112356
Q ss_pred EEEEeCCEEEEEEEecCCCeEEEEEeeCCCC-CCcceEEEEecCCccEEEEccCCE--EEEEEcCCeEE
Q 002753 501 GLLWLGKIIVVCNYIDSSNTYELLFYPRYHL-DQSSLLCRKSLLAKPIVMDVYEDY--ILVTYRPFDVH 566 (884)
Q Consensus 501 ~~~W~~~~lv~~~~~~~~~~~elr~y~~~~l-~~~~~l~~~~~~~~~~~~~~~~~~--llv~~~~~~i~ 566 (884)
.++|.++..+++..........+.++..... ...........+.........++. +++-+.+|.+.
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~ 559 (928)
T PF04762_consen 491 QLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVF 559 (928)
T ss_pred EEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEE
Confidence 8899865443332232224566666765311 122222333344433444333332 55556666665
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=5.4e-10 Score=113.51 Aligned_cols=186 Identities=15% Similarity=0.209 Sum_probs=136.0
Q ss_pred CEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC--CCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 002753 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (884)
Q Consensus 269 ~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~dg~v~vW~~~~~~l~~tl~ 346 (884)
..+|++..+|+|++||..+ ++.+..+++ +.+.++.++|.. .+..+.+|+.||+|++||+........+.
T Consensus 41 ~~vav~lSngsv~lyd~~t-g~~l~~fk~--------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-GQLLEEFKG--------PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccc-hhhhheecC--------CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 6799999999999999998 888888888 788888899987 46788999999999999998765444332
Q ss_pred --cccccceeeeeecCCCCCCccceeecc-------eeEEEecCCceE-EE-EecCCcceEEEEee----cceeecccCC
Q 002753 347 --QISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRL-YA-IEEGSSERVLIFSF----GKCCLNRGVS 411 (884)
Q Consensus 347 --~~~~~~v~s~~~s~~~~~~~~~l~sg~-------~i~~W~~~~~~l-~~-~~~~~~~~v~~~~~----~~~~~s~~~d 411 (884)
++......+++.. |+...++.|. .+.+||.+..+- +. ....|.+.|.++.| ...++|||.|
T Consensus 112 ~~~~~~~~f~~ld~n----ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLN----CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred ccCCCCCcceEeecc----CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 2311244444432 3335555554 789999987654 43 34568888866666 5689999999
Q ss_pred CCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCC-CEEEEEeCCceE-EEEccCCc
Q 002753 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 412 ~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG-~~lavag~dg~i-iwd~~s~~ 484 (884)
|-+.++++...++.= ......+|...|-++.|..++ +.+.+-+..+.. +|+.+.+.
T Consensus 188 GLvnlfD~~~d~EeD-----------------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEED-----------------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred ceEEeeecCCCcchh-----------------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 999999876654310 123455777789999999888 335555666666 99998876
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.15 E-value=2.8e-09 Score=120.83 Aligned_cols=264 Identities=14% Similarity=0.132 Sum_probs=159.1
Q ss_pred CCCceEEEEEecC-eEEEEEc-cCeEEEEecCCceeE-EEEEeeChHhhhhccceeEEEEcCCccE--EEEEecCcEEEE
Q 002753 19 PSSQQIIYFKVNN-GLLLIAS-PCHIELWSSSQHKVR-LGKYKRDSESVQREGENLQAVWSPDTKL--IAVVTSSLYLHI 93 (884)
Q Consensus 19 ~~~~~vv~fspdg-~lla~~t-~~~v~IW~~~~~~~~-l~~~~r~~~sl~~~G~~~~v~wsPDg~~--Lav~t~~g~l~l 93 (884)
++...+++|+|.. +++|.++ .++|.+||.+++..+ ......... .+-...+.+.|-.+-.. ++++++||.|..
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~--sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEV--SHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccc--cCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 4456778888774 5666664 689999999755432 111111111 13467788999765555 999999999999
Q ss_pred EEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEE-eecCCeEEEEecCCcEEEEecCCccccceeeecc
Q 002753 94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (884)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i-~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~ 172 (884)
|++..-...... +.+... .. .+...-+........| ..+...+++||..|.|....+.+....... ..
T Consensus 320 W~~~~l~~P~e~-------~~~~~~-~~-~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~--~~ 388 (555)
T KOG1587|consen 320 WDTDMLSLPVEG-------LLLESK-KH-KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV--SY 388 (555)
T ss_pred eeccccccchhh-------cccccc-cc-cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc--cc
Confidence 977532211000 000000 00 0000001111122223 234578999999999988666554422200 00
Q ss_pred CCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeec-ccc
Q 002753 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-KID 251 (884)
Q Consensus 173 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~-~~~ 251 (884)
+ . ......+.+.|..+.++| =+..+++++.|-++++|... ...
T Consensus 389 ~------------~--------------~~~~~~h~g~v~~v~~nP----------F~~k~fls~gDW~vriWs~~~~~~ 432 (555)
T KOG1587|consen 389 K------------G--------------HSTFITHIGPVYAVSRNP----------FYPKNFLSVGDWTVRIWSEDVIAS 432 (555)
T ss_pred c------------c--------------cccccccCcceEeeecCC----------CccceeeeeccceeEeccccCCCC
Confidence 0 0 011234566787777654 34444445557788889766 322
Q ss_pred cc---cCCCCcEE-EEEcCCC-CEEEEEecCCeEEEEEccCC-CcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEE
Q 002753 252 KE---LGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (884)
Q Consensus 252 ~~---~~h~~~v~-va~sp~~-~~la~g~~dg~v~lw~~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 325 (884)
.+ ..+.+.+. ++|||.. ..+|++..||.+.+||+... .+.+.+.+. +....+.+.|+++|+.||+|
T Consensus 433 Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--------~~~~l~~~~~s~~g~~lavG 504 (555)
T KOG1587|consen 433 PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--------CSPALTRVRWSPNGKLLAVG 504 (555)
T ss_pred cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--------cccccceeecCCCCcEEEEe
Confidence 22 34556565 9999964 67889999999999999751 233333333 44556788999999999999
Q ss_pred EcCCcEEEEeccCC
Q 002753 326 WKSRGLTVWSVSGC 339 (884)
Q Consensus 326 ~~dg~v~vW~~~~~ 339 (884)
...|++.+|++...
T Consensus 505 d~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 505 DANGTTHILKLSES 518 (555)
T ss_pred cCCCcEEEEEcCch
Confidence 99999999999644
No 196
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.14 E-value=1.4e-08 Score=102.52 Aligned_cols=221 Identities=15% Similarity=0.118 Sum_probs=122.8
Q ss_pred ceEEEEEecCeEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEE-EecCcEEEEEEEEecC
Q 002753 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAV-VTSSLYLHIFKVQITE 100 (884)
Q Consensus 22 ~~vv~fspdg~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav-~t~~g~l~l~~l~~~~ 100 (884)
.+..+|||+|+++|++.+-++.|-|.+ +... ..+ -.. -..+.-+.|+-|+-.+.. ...++.+.+|++....
T Consensus 11 ~~~c~fSp~g~yiAs~~~yrlviRd~~-tlq~-~ql---f~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 11 NPFCSFSPCGNYIASLSRYRLVIRDSE-TLQL-HQL---FLC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE 82 (447)
T ss_pred CCceeECCCCCeeeeeeeeEEEEeccc-hhhH-HHH---HHH---HHHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence 345689999999999999899998885 3211 100 011 134567899999987555 5567799999996322
Q ss_pred ceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEec-CCcEEEEecCCccccceeeeccCCCCccc
Q 002753 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (884)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~-~g~i~~~~w~~~~~~~~~l~~~~~~~~~i 179 (884)
- +- .+.+ +...-+..+-++++.+++..++ +-.|.+|+.......
T Consensus 83 w--~c---------------kIde----g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-------------- 127 (447)
T KOG4497|consen 83 W--YC---------------KIDE----GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-------------- 127 (447)
T ss_pred e--EE---------------Eecc----CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE--------------
Confidence 0 00 0000 1111112345677766666554 445555544332211
Q ss_pred eeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc------
Q 002753 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------ 253 (884)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~------ 253 (884)
.+...+..+..+ ++.+||+..+...........+...-+.|
T Consensus 128 -----------------------~~~~pK~~~kg~----------~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f 174 (447)
T KOG4497|consen 128 -----------------------LLPHPKTNVKGY----------AFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEF 174 (447)
T ss_pred -----------------------EecccccCceeE----------EECCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence 011112233333 45788888776654322111111111111
Q ss_pred -cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEE
Q 002753 254 -LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (884)
Q Consensus 254 -~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~ 332 (884)
...-+.+-+.|+|||+.||+ ||--- .-.+...+ ..-.+..++|||.|++||+|+.|+.+|
T Consensus 175 ~~dT~DltgieWsPdg~~laV---------wd~~L-eykv~aYe---------~~lG~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 175 KLDTIDLTGIEWSPDGNWLAV---------WDNVL-EYKVYAYE---------RGLGLKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred CCCcccccCceECCCCcEEEE---------ecchh-hheeeeee---------eccceeEEEeccccceEEeeccchhhh
Confidence 12223344899999998876 33211 00010011 123589999999999999999999988
Q ss_pred EEecc
Q 002753 333 VWSVS 337 (884)
Q Consensus 333 vW~~~ 337 (884)
|-+-.
T Consensus 236 vlnh~ 240 (447)
T KOG4497|consen 236 VLNHF 240 (447)
T ss_pred hhcee
Confidence 75443
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=2.8e-09 Score=109.48 Aligned_cols=247 Identities=11% Similarity=0.047 Sum_probs=167.9
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCC-----CcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEc
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~-----~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (884)
.+|...+. +.||.++++||+|+.|..++||+++.. .+++..... .|...|.|++|.-..+.+.+|..
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~-------~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH-------PHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccC-------ccccceEEEEEccCCeeEecCCC
Confidence 68999888 999999999999999999999999751 122222111 26688999999999999999999
Q ss_pred CCcEEEEeccCCeeEEEeccc-cccceeeeeecCCCCCCccceeecc---eeEEEecCCce----EEEEecCCcceE--E
Q 002753 328 SRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR----LYAIEEGSSERV--L 397 (884)
Q Consensus 328 dg~v~vW~~~~~~l~~tl~~~-~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~----l~~~~~~~~~~v--~ 397 (884)
+++|..-|+.+.+.+..+... ....|..+..+|.+ ..+++.+ .+.+|+....+ ++... ...... .
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D----N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A-N~~~~F~t~ 200 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD----NTLIVVTRAKLVSFIDNRDRQNPISLVLPA-NSGKNFYTA 200 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCC----ceEEEEecCceEEEEeccCCCCCCceeeec-CCCccceee
Confidence 999999999998877666542 13468888888887 6666554 78899886543 33222 122233 3
Q ss_pred EEee--cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCce
Q 002753 398 IFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 475 (884)
Q Consensus 398 ~~~~--~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~ 475 (884)
.|.+ ...+++.+..+.+.+|+.......++-+.+.- .+|+ .+-.-.++-|+|.|..+.+--+..-
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~---------~L~~----~~~~~M~~~~~~~G~Q~msiRR~~~ 267 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFK---------GLPQ----ENTEWMGSLWSPSGNQFMSIRRGKC 267 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHHhhhccc---------cCcc----cchhhhheeeCCCCCeehhhhccCC
Confidence 4444 45677788888888999876555433222210 0111 1112246789999998876544444
Q ss_pred E-EEEccCCcEEEecCc-cceeeeE---EEEEEEeCCEEEEEEEecCCCeEEEEEeeCC
Q 002753 476 I-LYDIRQKKWRVFGDI-TQEQKIQ---SKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (884)
Q Consensus 476 i-iwd~~s~~w~~f~~~-~~e~~~~---v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~ 529 (884)
. +||+.+.+...|... .+..-++ +..|++.+++-|+.+ +..+.|.+|..+
T Consensus 268 P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tG----SD~~~i~~WklP 322 (609)
T KOG4227|consen 268 PLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATG----SDHWGIHIWKLP 322 (609)
T ss_pred CEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeecc----CcccceEEEecC
Confidence 4 999999998887644 2222222 447899988876542 345677888765
No 198
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.09 E-value=1.4e-09 Score=117.85 Aligned_cols=118 Identities=21% Similarity=0.277 Sum_probs=96.7
Q ss_pred cCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccc---------cc-ccCCCCcEE-EEEcC-CCCEEE
Q 002753 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI---------DK-ELGSGDAVC-ASIAP-EQQILA 272 (884)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~---------~~-~~~h~~~v~-va~sp-~~~~la 272 (884)
...++.|+++.|+|. |.+.++++.+|+.+++|..... +. +..|.+.+| +.|+| -...||
T Consensus 624 l~Ngt~vtDl~WdPF---------D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa 694 (1012)
T KOG1445|consen 624 LFNGTLVTDLHWDPF---------DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLA 694 (1012)
T ss_pred cccCceeeecccCCC---------ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhh
Confidence 445677889998873 4555677788888888876532 11 267888888 99999 468999
Q ss_pred EEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 002753 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (884)
Q Consensus 273 ~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~ 340 (884)
+++.|.+|++||+.+ ......+.+ |++.|..++|||||+.+|+.+.||+++|+....+.
T Consensus 695 ~asyd~Ti~lWDl~~-~~~~~~l~g--------HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 695 VASYDSTIELWDLAN-AKLYSRLVG--------HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhccceeeeeehhh-hhhhheecc--------CcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 999999999999998 666667777 99999999999999999999999999999987653
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.09 E-value=2.2e-08 Score=103.16 Aligned_cols=229 Identities=16% Similarity=0.242 Sum_probs=145.6
Q ss_pred EEEEEecCeEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhcc-ceeEEEEcCCccEEEEEecCc--EEEEEEEEecC
Q 002753 24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSSL--YLHIFKVQITE 100 (884)
Q Consensus 24 vv~fspdg~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wsPDg~~Lav~t~~g--~l~l~~l~~~~ 100 (884)
.+.|+-|+.+|++++.++-++++.+ |-.+.. +....| .+.-+-|| +..+|+.+.+. .+++++.+...
T Consensus 10 ~~~~Nqd~~~lsvGs~~Gyk~~~~~-~~~k~~-------~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDGYKIFSCS-PFEKCF-------SKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred eeeeccceeEEEccCCCceeEEecC-chHHhh-------cccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCc
Confidence 3558888999999999999999996 544311 111112 23456676 45677766543 47777765332
Q ss_pred ceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccce
Q 002753 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (884)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~ 180 (884)
. +.. + .+ ...|.++.-++++|++...+. |++++......-.. +.
T Consensus 80 ~-ICe------------~--~f---------pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhT-----------I~ 123 (391)
T KOG2110|consen 80 T-ICE------------I--FF---------PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHT-----------IE 123 (391)
T ss_pred e-EEE------------E--ec---------CCceEEEEEccceEEEEEccc-EEEEecccceeehh-----------hh
Confidence 1 000 0 11 012556777888998887766 77766654332110 00
Q ss_pred eecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcC--CcEEEEe--ecCCccceeeecccccc---
Q 002753 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN--GQLMSCS--VSKKGLKLAEFIKIDKE--- 253 (884)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~d--G~~~~~~--~~d~~i~~w~~~~~~~~--- 253 (884)
. +..+. .+.++++++ +.+++.- ...|.+.+||..+.+..
T Consensus 124 t----------------------~~~n~------------~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 124 T----------------------TPPNP------------KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred c----------------------cCCCc------------cceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 0 00111 122222222 2233321 13566778887765432
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCe-EEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcE
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg~-v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v 331 (884)
..|.+.+. ++|||+|.+|||+++.|+ ||||.+.+ ++.+..++... ....|.+++|+||+.+|++.+..++|
T Consensus 170 ~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~------~~~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGT------YPVSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCc------eeeEEEEEEECCCCCeEEEecCCCeE
Confidence 67888886 999999999999999997 59999988 77777776411 13458899999999999999999999
Q ss_pred EEEeccCC
Q 002753 332 TVWSVSGC 339 (884)
Q Consensus 332 ~vW~~~~~ 339 (884)
.++.+...
T Consensus 243 HiFKL~~~ 250 (391)
T KOG2110|consen 243 HIFKLEKV 250 (391)
T ss_pred EEEEeccc
Confidence 99988654
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=1.1e-08 Score=117.51 Aligned_cols=278 Identities=16% Similarity=0.177 Sum_probs=164.5
Q ss_pred CceEEEEEecCeEEEEEc-cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEc--CCccEEEEEecCcEEEEEEEE
Q 002753 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWS--PDTKLIAVVTSSLYLHIFKVQ 97 (884)
Q Consensus 21 ~~~vv~fspdg~lla~~t-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~ws--PDg~~Lav~t~~g~l~l~~l~ 97 (884)
...++.|+|=...++++. ..+++|||.++. ..+..+.-... -.-.+.++++- -|..++.++++||.|+||+--
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~-~~l~~F~n~~~---~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKG-RLLNGFDNGAF---PDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccC-ceeccccCCCC---CCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 345677888777888886 568999999643 33333321110 12234566654 466789999999999999752
Q ss_pred ecC-ceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCC
Q 002753 98 ITE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (884)
Q Consensus 98 ~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~ 176 (884)
... +.. + +.+.-..++.........+.++.-.....+++++++-..|++ ||.+....
T Consensus 1142 ~~~~~~~--------e--LVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRI--WDa~~E~~---------- 1199 (1387)
T KOG1517|consen 1142 ADKWKKP--------E--LVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRI--WDAHKEQV---------- 1199 (1387)
T ss_pred ccccCCc--------e--eEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEE--Eeccccee----------
Confidence 221 100 0 000000112222222223345555555677777766556666 65544221
Q ss_pred ccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccccc----
Q 002753 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---- 252 (884)
Q Consensus 177 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~---- 252 (884)
...+|+ ...+.++++.-+ ...|.+++.|..||.++++|...+..
T Consensus 1200 --~~diP~---------------------~s~t~vTaLS~~---------~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1200 --VADIPY---------------------GSSTLVTALSAD---------LVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred --Eeeccc---------------------CCCccceeeccc---------ccCCceEEEeecCCceEEeecccCCccccc
Confidence 122221 233445555421 23478888888899988888765433
Q ss_pred --ccCCCCc--EE-EEEcCCCC-EEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEE
Q 002753 253 --ELGSGDA--VC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (884)
Q Consensus 253 --~~~h~~~--v~-va~sp~~~-~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~ 326 (884)
+..|.+. +. +.+.++|- -|++|+.||.|++||++.. .....+... ..+...+.++++..+++...+|+|+
T Consensus 1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~iv---~~~~yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLTIV---AHWEYGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccceee---eccccCccceeeeeccCCCeeeecC
Confidence 2456665 54 89988664 4999999999999999872 222212110 0111123599999999999999999
Q ss_pred cCCcEEEEeccCCeeEEEecc------ccccceeeeeecCCC
Q 002753 327 KSRGLTVWSVSGCRLMSTIRQ------ISLSSISSPIVKPNQ 362 (884)
Q Consensus 327 ~dg~v~vW~~~~~~l~~tl~~------~~~~~v~s~~~s~~~ 362 (884)
. +.++||++.|.++. .++. .....+++++|+|-.
T Consensus 1324 ~-q~ikIy~~~G~~l~-~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1324 A-QLIKIYSLSGEQLN-IIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred c-ceEEEEecChhhhc-ccccCcccccCcCCCcceeeecchh
Confidence 9 99999999986542 2221 112345666776654
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.6e-08 Score=98.21 Aligned_cols=238 Identities=16% Similarity=0.167 Sum_probs=147.8
Q ss_pred EEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEE
Q 002753 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (884)
Q Consensus 137 ~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~ 216 (884)
++++.+..+++|...|.|.+++.+.-..+... +. +.........+++++.+|.|
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~----------------~~----------gk~~iv~eqahdgpiy~~~f 70 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE----------------PP----------GKLKIVPEQAHDGPIYYLAF 70 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccC----------------CC----------CCcceeeccccCCCeeeeee
Confidence 45677788999999999988876532211110 00 01111233567888888887
Q ss_pred cCCcceEEEEEcCCcEEEEeec-----CCccceeeecccccc-cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCC
Q 002753 217 CLPMRLLFVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKE-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA 289 (884)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~-----d~~i~~w~~~~~~~~-~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~ 289 (884)
.+. ++....||++...--. .++-++|....+... .-.-.-+. +...|...-+.+++.|+.+.-||+++ +
T Consensus 71 ~d~---~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-G 146 (325)
T KOG0649|consen 71 HDD---FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED-G 146 (325)
T ss_pred ehh---heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC-C
Confidence 532 2233344555443221 112224443333221 00112234 67788877777777999999999999 8
Q ss_pred cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccc---------cceeeeeecC
Q 002753 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL---------SSISSPIVKP 360 (884)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~---------~~v~s~~~s~ 360 (884)
+..+++++ |+..|.++.-......+.+|++||++|+||..+++.+.++.-... ..+-+++.+.
T Consensus 147 ~i~r~~rG--------HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e 218 (325)
T KOG0649|consen 147 RIQREYRG--------HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE 218 (325)
T ss_pred EEEEEEcC--------CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC
Confidence 88899999 999999999855555688999999999999999999888764211 1222333221
Q ss_pred CCCCCccceee--cceeEEEecCCceEEEEecCCcceEEEEee-cceeecccCCCCceeeee
Q 002753 361 NQDCKYEPLMS--GTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQV 419 (884)
Q Consensus 361 ~~~~~~~~l~s--g~~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~l 419 (884)
.-++. |-...+|.....+...++.- ..++-...| .+.+++++..+.+..|.+
T Consensus 219 ------dWlvCGgGp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 219 ------DWLVCGGGPKLSLWHLRSSESTCVFPI-PARVHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred ------ceEEecCCCceeEEeccCCCceEEEec-ccceeEeeeecceEEEeccccceeeeee
Confidence 22222 23788899888776655532 345555566 667777777777776664
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=5.5e-09 Score=118.93 Aligned_cols=206 Identities=13% Similarity=0.136 Sum_probs=127.8
Q ss_pred EEEEcCCcEEEEeecC---Cccceeeeccccc--ccCCCC-cEEEEEcCCCCEEEEEe-cCCeEEEEEccCCCcceEEEe
Q 002753 224 FVLYSNGQLMSCSVSK---KGLKLAEFIKIDK--ELGSGD-AVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVS 296 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d---~~i~~w~~~~~~~--~~~h~~-~v~va~sp~~~~la~g~-~dg~v~lw~~~~~~~~~~~l~ 296 (884)
..++|||+.++..+.+ .++.+|+..+++. +..... ....+|||||+.|++++ .+|.+.||.++..++....+.
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT 288 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec
Confidence 4468888877765543 2467888765532 211111 22489999999998865 688777775543234445555
Q ss_pred eccCCCCCCCCcCeEEEEECCCCCEEEEEE-cCCcEEEEeccCC-eeEEEeccccccceeeeeecCCCCCCccceeec--
Q 002753 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-- 372 (884)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spdg~~Lasg~-~dg~v~vW~~~~~-~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg-- 372 (884)
. +.+.+.+.+|+|||+.|+.++ .+|...+|.+... .....+ .+ .. ..+.++|++ ..++..
T Consensus 289 ~--------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~~--~~~~~SpDG----~~ia~~~~ 352 (429)
T PRK01742 289 S--------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-RG--YSAQISADG----KTLVMING 352 (429)
T ss_pred c--------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-CC--CCccCCCCC----CEEEEEcC
Confidence 4 566788899999999877655 5688899987421 112222 22 22 356789998 555433
Q ss_pred ceeEEEecCCceEEEEecCCcceEEEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccC
Q 002753 373 TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (884)
Q Consensus 373 ~~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~ 451 (884)
..+..|+..+++...........-..+++ ++.++.++.++...+|.+...+.+ ....+.+|
T Consensus 353 ~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~------------------~~~~l~~~ 414 (429)
T PRK01742 353 DNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR------------------FKARLPGS 414 (429)
T ss_pred CCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC------------------ceEEccCC
Confidence 35667888877654433232222245666 778888888888877776432221 13345566
Q ss_pred CCceEEEEEccC
Q 002753 452 NWPVQHVAASKD 463 (884)
Q Consensus 452 ~~~I~~va~S~d 463 (884)
.+.++..+|||-
T Consensus 415 ~g~~~~p~wsp~ 426 (429)
T PRK01742 415 DGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCcccCCC
Confidence 677888888874
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.06 E-value=4e-09 Score=103.62 Aligned_cols=226 Identities=15% Similarity=0.095 Sum_probs=139.7
Q ss_pred EcCCcEEEEeecCCccceeeecccccc---c-CCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcce--EEEeecc
Q 002753 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---L-GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLI--RTVSLYD 299 (884)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~~---~-~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~--~~l~~~~ 299 (884)
-.+++ +..+...|-++.|...+.... . .+...+. +..-|+ ..+.+-+.|+.+.+|++.. ...+ +.+..+.
T Consensus 23 qa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~-s~~i~i~Si~~ns 99 (323)
T KOG0322|consen 23 QANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY-SAFISIHSIVVNS 99 (323)
T ss_pred ccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC-cceEEEeeeeccc
Confidence 34555 555667777888887654332 2 3445554 555555 5566778899999999865 1100 0000000
Q ss_pred C-------------------------------------------CCCCCCCcCeEEEEECC-CCC--EEEEEEcCCcEEE
Q 002753 300 W-------------------------------------------GYSMDDTGPVSCIAWTP-DNS--AFAVGWKSRGLTV 333 (884)
Q Consensus 300 ~-------------------------------------------~~~~~h~~~V~~l~~sp-dg~--~Lasg~~dg~v~v 333 (884)
. +...+..|.|.|..|.. ++. +|++|+++|.+-+
T Consensus 100 lgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~ 179 (323)
T KOG0322|consen 100 LGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVI 179 (323)
T ss_pred cccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEE
Confidence 0 01123467788888654 344 6778999999999
Q ss_pred EeccCCeeEEE----------eccccccceeeeeecCCCCCCccceeecc---eeEEEecCC----ceEEEEecCCcceE
Q 002753 334 WSVSGCRLMST----------IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG----YRLYAIEEGSSERV 396 (884)
Q Consensus 334 W~~~~~~l~~t----------l~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~----~~l~~~~~~~~~~v 396 (884)
||+..+...-. ...| ...|.++.+.+.- ..=++|+ ....|+.+. -++-....-....+
T Consensus 180 wd~S~~~~~~~~~~~~kv~~~~ash-~qpvlsldyas~~----~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv 254 (323)
T KOG0322|consen 180 WDLSTGDKIIQLPQSSKVESPNASH-KQPVLSLDYASSC----DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGV 254 (323)
T ss_pred EEccCCceeeccccccccccchhhc-cCcceeeeechhh----cCCcCCCccccceeeeeccccCcccccceEEecCCCc
Confidence 99988632222 2223 5567777765432 1112222 444555432 22211111111122
Q ss_pred --EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCC
Q 002753 397 --LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (884)
Q Consensus 397 --~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~d 473 (884)
+.+++ +|.++|+++|+.+|++....... ...+.-|...|+++|||||-..+|.||+|
T Consensus 255 ~gvrIRpD~KIlATAGWD~RiRVyswrtl~p--------------------LAVLkyHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 255 SGVRIRPDGKILATAGWDHRIRVYSWRTLNP--------------------LAVLKYHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred cceEEccCCcEEeecccCCcEEEEEeccCCc--------------------hhhhhhhhcceeEEEeCCCCchhhhccCC
Confidence 56667 89999999999999877554432 45677788999999999999999999999
Q ss_pred ceE-EEEc
Q 002753 474 GLI-LYDI 480 (884)
Q Consensus 474 g~i-iwd~ 480 (884)
+.| +|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 999 9986
No 204
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.06 E-value=9.8e-09 Score=102.15 Aligned_cols=186 Identities=13% Similarity=0.217 Sum_probs=119.8
Q ss_pred CCCCcEE-EEEcCCC-----CEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEc
Q 002753 255 GSGDAVC-ASIAPEQ-----QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWK 327 (884)
Q Consensus 255 ~h~~~v~-va~sp~~-----~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~ 327 (884)
.|.-+++ +-|.|+. ++||+.+ ..+|+|.+..+...+..-..........+.+++++..|.. |-+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5666666 8899976 4788754 4799999985322222111111111234778999999986 8899999999
Q ss_pred CCcEEEEeccCCe---eEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecce
Q 002753 328 SRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKC 404 (884)
Q Consensus 328 dg~v~vW~~~~~~---l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~ 404 (884)
|-+..|||+..+. ....|..| ..+|..++|...+ ...
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAH-DKEV~DIaf~~~s---------------------------------------~~~ 211 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAH-DKEVYDIAFLKGS---------------------------------------RDV 211 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEec-CcceeEEEeccCc---------------------------------------cce
Confidence 9999999998763 23334444 3445555544322 123
Q ss_pred eecccCCCCceeeeeeecCCeEEEEecCCCC------------------------ceeEEEeecc----cccccCCCceE
Q 002753 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTD------------------------ELKILHLNLP----VSYISQNWPVQ 456 (884)
Q Consensus 405 ~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~------------------------~~~w~~~~~p----~~~~~~~~~I~ 456 (884)
+++.+.||++|++|+..-+..-.+|.+.... +.....++.| .++.+|...|+
T Consensus 212 FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VN 291 (364)
T KOG0290|consen 212 FASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVN 291 (364)
T ss_pred EEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccccc
Confidence 4555666666666665555555555433211 0111223333 36789999999
Q ss_pred EEEEccC-CCEEEEEeCCceE-EEEccC
Q 002753 457 HVAASKD-GMFLAVAGLHGLI-LYDIRQ 482 (884)
Q Consensus 457 ~va~S~d-G~~lavag~dg~i-iwd~~s 482 (884)
.++|.|. +..+++||.|..+ +||+++
T Consensus 292 gIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 292 GIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ceEecCCCCceeeecCCcceEEEEeccc
Confidence 9999997 6799999999999 999976
No 205
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=2.6e-08 Score=102.48 Aligned_cols=218 Identities=14% Similarity=0.132 Sum_probs=136.7
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCC-CCEEEEEEcCCcEEEEe
Q 002753 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWS 335 (884)
Q Consensus 258 ~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd-g~~Lasg~~dg~v~vW~ 335 (884)
.+|. +..+|..+.+|+.+.+|.|.+||..+.......+-... ......++.|.|- -.+|++++..+++-+||
T Consensus 150 ~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN------~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D 223 (609)
T KOG4227|consen 150 GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN------SGKNFYTAEFHPETPALILVNSETGGPNVFD 223 (609)
T ss_pred cceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC------CCccceeeeecCCCceeEEeccccCCCCcee
Confidence 3666 89999999999999999999999987332332222111 2345677889995 57888999999999999
Q ss_pred ccCCee-------EEEeccccccceeeeeecCCCCCCccceeec---ceeEEEecCCceEEEEecCCcc-------eEEE
Q 002753 336 VSGCRL-------MSTIRQISLSSISSPIVKPNQDCKYEPLMSG---TSMMQWDEYGYRLYAIEEGSSE-------RVLI 398 (884)
Q Consensus 336 ~~~~~l-------~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg---~~i~~W~~~~~~l~~~~~~~~~-------~v~~ 398 (884)
...... ...|... ...-.++.|+|+| ..+++- -.-+.++.-+.++.+.-..|.. .+..
T Consensus 224 ~R~~~~~~~~~~~~~~L~~~-~~~~M~~~~~~~G----~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS 298 (609)
T KOG4227|consen 224 RRMQARPVYQRSMFKGLPQE-NTEWMGSLWSPSG----NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKS 298 (609)
T ss_pred eccccchHHhhhccccCccc-chhhhheeeCCCC----CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeee
Confidence 854221 1112211 1122456788887 444421 1345566666566555444332 2333
Q ss_pred Eee--cceeecccCCCCceeeeeeecCCeEEEE-ecCCCCceeE--EEeecccccccCCCceEEEEEccCCCEEEEEeCC
Q 002753 399 FSF--GKCCLNRGVSGMTYARQVIYGEDRLLVV-QSEDTDELKI--LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (884)
Q Consensus 399 ~~~--~~~~~s~~~d~~~~~w~l~~~~~~~~i~-~~~~~~~~~w--~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~d 473 (884)
..| ...+++|+.+-.+++|.+....+.--+. -|.+...+-- -.-+-...+.+|..-+.+|.|+|....|+++|-.
T Consensus 299 ~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE 378 (609)
T KOG4227|consen 299 MTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVE 378 (609)
T ss_pred eeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchh
Confidence 344 4467889999899999876544421111 1222111100 0011134577999999999999999999999998
Q ss_pred ceE-EEEccCCcEE
Q 002753 474 GLI-LYDIRQKKWR 486 (884)
Q Consensus 474 g~i-iwd~~s~~w~ 486 (884)
..+ +|+.....|.
T Consensus 379 ~~~KlWS~~r~P~~ 392 (609)
T KOG4227|consen 379 NSFKLWSDHRLPWS 392 (609)
T ss_pred hheeccccccCCcc
Confidence 888 9988666664
No 206
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.98 E-value=6.2e-10 Score=124.34 Aligned_cols=217 Identities=16% Similarity=0.200 Sum_probs=157.7
Q ss_pred cccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCc
Q 002753 252 KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (884)
Q Consensus 252 ~~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~ 330 (884)
.+.+|..+|. +.|...|.+|.+|+.|..|+||.+++ +.++....+ |.+.|+.++.+....++|+++.|..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rG--------hs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRG--------HSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhhhccCCC--------CccccchhccchhhhhhhhcccCce
Confidence 3479999985 88999999999999999999999888 788888888 9999999999999999999999999
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEe---cCC-cceEEEEee---cc
Q 002753 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIE---EGS-SERVLIFSF---GK 403 (884)
Q Consensus 331 v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~---~~~-~~~v~~~~~---~~ 403 (884)
|++|.+..+.++..+.+| +++|++++|+|-..+. .-.++.+|+.+-.-+...- ... ...+..+-+ +.
T Consensus 256 IrvWrl~~~~pvsvLrgh-tgavtaiafsP~~sss-----~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~ 329 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGH-TGAVTAIAFSPRASSS-----DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD 329 (1113)
T ss_pred EEEEecCCCchHHHHhcc-ccceeeeccCccccCC-----CCCceEeccccccccccCCCCCCcccccceeeeecccccc
Confidence 999999999999999999 8999999999864110 1138889987711111110 001 112222222 66
Q ss_pred eeecccCCCCceeeeeeec---CCeE-EEEecCCCC-----------ceeEEE--eecccccccCCCceEEEEEccCCC-
Q 002753 404 CCLNRGVSGMTYARQVIYG---EDRL-LVVQSEDTD-----------ELKILH--LNLPVSYISQNWPVQHVAASKDGM- 465 (884)
Q Consensus 404 ~~~s~~~d~~~~~w~l~~~---~~~~-~i~~~~~~~-----------~~~w~~--~~~p~~~~~~~~~I~~va~S~dG~- 465 (884)
..+|++.|++...|.+.+- ...+ ++....+.+ .+.|.. .++...+.+|..++.-+.++|-..
T Consensus 330 ~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 330 RFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred ccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 7789999998887765432 2222 333332332 123432 233455668888999999998655
Q ss_pred EEEEEeCCceE-EEEccCC
Q 002753 466 FLAVAGLHGLI-LYDIRQK 483 (884)
Q Consensus 466 ~lavag~dg~i-iwd~~s~ 483 (884)
..-++|.||.. +||+-.|
T Consensus 410 i~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred hhhhccCCCceEeeecccC
Confidence 45588999998 9998655
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1e-08 Score=105.00 Aligned_cols=186 Identities=22% Similarity=0.285 Sum_probs=133.9
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCC-CCEEEEEEcCCcEEEEeccCCe
Q 002753 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCR 340 (884)
Q Consensus 262 va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd-g~~Lasg~~dg~v~vW~~~~~~ 340 (884)
++|++.---+|++..|-.||+|+-.. .....++.. ....|+|++|-|. ++-||+|+. ++|.+|......
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss--t~pt~Lks~-------sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLKSV-------SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC--CCCceecch-------hhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence 89999878889999999999999765 333333321 3567999999995 568888888 899999874321
Q ss_pred e------------EEEeccccccceeeeeecCCCCCCccceeecc----eeEEEecCCceEEEEe-cC-CcceEEEEee-
Q 002753 341 L------------MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIE-EG-SSERVLIFSF- 401 (884)
Q Consensus 341 l------------~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~----~i~~W~~~~~~l~~~~-~~-~~~~v~~~~~- 401 (884)
. ...+++.+...|+++++.+|+ ..+++++ .+++|++.++...... .+ ....+..+++
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg----t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd 249 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG----TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD 249 (445)
T ss_pred ccccccccccccchhheeCCCCceeeEEEEcCCC----CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence 1 122333345789999999998 7777665 8999999988766554 22 2223577777
Q ss_pred cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceEEEEcc
Q 002753 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIR 481 (884)
Q Consensus 402 ~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~iiwd~~ 481 (884)
+..+..+..|+..++|...+.-.. ....-..+.|...+|||+|++|..+......+|++.
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~--------------------erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTK--------------------ERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred CCEEEEecccceeeeehhccccee--------------------cceeccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 888889999999999975443221 112222348999999999999988877666688874
No 208
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.98 E-value=2.5e-08 Score=99.94 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=77.5
Q ss_pred CccEEEEEEcCCcceEEEEEcCCcEEEEee--cCCccceeeecccccccCCCCcE-EEEEcCCCCEEEEEec---CCeEE
Q 002753 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSV--SKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTR---RGVVE 281 (884)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~--~d~~i~~w~~~~~~~~~~h~~~v-~va~sp~~~~la~g~~---dg~v~ 281 (884)
++.|.+++|+ |+|+.+++.. .+..+.+|+........-+.... .+.|||+|+++|+|+. .|.+.
T Consensus 59 ~~~I~~~~Ws----------P~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 59 EGPIHDVAWS----------PNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred CCceEEEEEC----------cCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEE
Confidence 4458888875 5555443322 33466777765221112223334 4999999999999874 46799
Q ss_pred EEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEc------CCcEEEEeccCCeeE
Q 002753 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRLM 342 (884)
Q Consensus 282 lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~------dg~v~vW~~~~~~l~ 342 (884)
+||+++ .+.+.... |. .++.++|||||++|+++.. |++++||+..|.++.
T Consensus 129 ~wd~~~-~~~i~~~~---------~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 129 FWDVRK-KKKISTFE---------HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred EEECCC-CEEeeccc---------cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 999986 55554332 33 4789999999999999874 799999999876543
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.96 E-value=3.7e-08 Score=99.61 Aligned_cols=233 Identities=15% Similarity=0.159 Sum_probs=157.9
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEccCCC--cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEE
Q 002753 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (884)
Q Consensus 257 ~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~--~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW 334 (884)
...+|-|||+|...+|++..+..|.||...... +..++++. |...|+.+.|+|.+..|++++.|++-.||
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~--------Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE--------HDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh--------hCcceeEEeecCCCCceeEccCCCCcccc
Confidence 345679999999999999999999999987622 34556666 99999999999999999999999999999
Q ss_pred ec-cCCeeEEEe--ccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEe----cCCcceEEEEee---
Q 002753 335 SV-SGCRLMSTI--RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE----EGSSERVLIFSF--- 401 (884)
Q Consensus 335 ~~-~~~~l~~tl--~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~----~~~~~~v~~~~~--- 401 (884)
.. .++.-..++ ..+ ...++++.++|.+ +.++.|+ .+-+|..++..-|-+. +.+...|..+++
T Consensus 83 ~~~~~~~WkptlvLlRi-NrAAt~V~WsP~e----nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRI-NRAATCVKWSPKE----NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred ccCCCCeeccceeEEEe-ccceeeEeecCcC----ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 99 666533332 223 5678999999998 7777665 5666766665555332 234566777777
Q ss_pred cceeecccCCCCceeeeeeecCCeEEEEecCCCCc-eeEEE----eecccccccCCCceEEEEEccCCCEEEEEeCCceE
Q 002753 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE-LKILH----LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (884)
Q Consensus 402 ~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~-~~w~~----~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i 476 (884)
.-.+++||.|+..+++...-. .-++.+. .-|.. .++..++....+.|..+.|||+|..||=.+.|+.+
T Consensus 158 nVLlaaGs~D~k~rVfSayIK-------~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIK-------GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred cceecccccCcceeEEEEeee-------ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 446678888998887653211 1111111 12311 12233454566789999999999999999999999
Q ss_pred -EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEE
Q 002753 477 -LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVV 511 (884)
Q Consensus 477 -iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~ 511 (884)
+=|....+-+ .....+++ +.-+.+.|....-++
T Consensus 231 ~~~da~~p~~~-v~~~~~~~-lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 231 SFVDAAGPSER-VQSVATAQ-LPLLSVSWISENSVV 264 (361)
T ss_pred EEeecCCCchh-ccchhhcc-CCceeeEeecCCcee
Confidence 6665443211 11122222 334567776544333
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.94 E-value=3.5e-07 Score=92.65 Aligned_cols=182 Identities=16% Similarity=0.240 Sum_probs=114.8
Q ss_pred CeEEEEEc--------cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCce
Q 002753 31 NGLLLIAS--------PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (884)
Q Consensus 31 g~lla~~t--------~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~ 102 (884)
.++||.++ ++.|.|||-.+ ...+..+. -.+++.+|.+++| .|++.. ++.|.+|+.......
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~k-~~~i~el~-------f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~ 126 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDLK-ERCIIELS-------FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL 126 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEeccc-CcEEEEEE-------eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh
Confidence 35777663 24799999643 23333333 2477899999987 566665 446999987533222
Q ss_pred eecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecC-CeEEE--EecCCcEEEEecCCccccceeeeccCCCCccc
Q 002753 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLL--GLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (884)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~llv--~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i 179 (884)
+..- +-....++ +.++.+.. ..+++ |.+-|.+++...........
T Consensus 127 l~~~----------------et~~NPkG----lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p------------ 174 (346)
T KOG2111|consen 127 LHVI----------------ETRSNPKG----LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAP------------ 174 (346)
T ss_pred eeee----------------ecccCCCc----eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCc------------
Confidence 2110 00000111 33333332 23333 45668888766543221100
Q ss_pred eeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCcc-ceeeecccccc-----
Q 002753 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKE----- 253 (884)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i-~~w~~~~~~~~----- 253 (884)
.....|++.|.+|+ ++-+|.++|+++..||+ ++||..++.++
T Consensus 175 ----------------------~~I~AH~s~Iacv~----------Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 175 ----------------------SIINAHDSDIACVA----------LNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred ----------------------eEEEcccCceeEEE----------EcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 22345677777666 68899999999999985 69999888765
Q ss_pred -cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccC
Q 002753 254 -LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (884)
Q Consensus 254 -~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~ 287 (884)
..+.+.-|++|||++.+||+.+.-||+.+|.+.+
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 2344445699999999999999999999999976
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=7e-09 Score=111.12 Aligned_cols=160 Identities=21% Similarity=0.262 Sum_probs=115.2
Q ss_pred CCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCC
Q 002753 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (884)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~ 382 (884)
|+|-|+|++|+.||.+||+|++|-.+.|||.+..+++..+...|...|-++.|-|.. +.+.+++|. .+++++...
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t--nnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT--NNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC--CCeEEEeccCcceEEEEeccc
Confidence 999999999999999999999999999999999999988876558899999998854 346777776 788888763
Q ss_pred c----------eEEEEecCCcceE--EEEee--cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeeccc--
Q 002753 383 Y----------RLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV-- 446 (884)
Q Consensus 383 ~----------~l~~~~~~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~-- 446 (884)
. +....+..|..+| .+..+ ...+.+++.||+++.+|+...... . +...+|.
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c-----~--------p~~~~~~~l 193 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC-----N--------PDEDCPSIL 193 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC-----C--------ccccccHHH
Confidence 1 1222333455555 22223 357778899999998887653221 0 0000111
Q ss_pred -ccccCCCceEEEEEccC-CCEEEEEeCCceE-EEEc
Q 002753 447 -SYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 447 -~~~~~~~~I~~va~S~d-G~~lavag~dg~i-iwd~ 480 (884)
.|...--...|+++||. -.+||+||.|-.+ +||.
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 12222234778999987 5689999999999 9995
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.92 E-value=7.2e-08 Score=96.59 Aligned_cols=97 Identities=24% Similarity=0.365 Sum_probs=75.3
Q ss_pred CcEE-EEEcCCCCEEEEE--ecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC---CcE
Q 002753 258 DAVC-ASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGL 331 (884)
Q Consensus 258 ~~v~-va~sp~~~~la~g--~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d---g~v 331 (884)
..+. ++|+|+|+.+|+. ..++.|.+||++ ++.+..+ +.+.+..+.|||+|++||+|+.+ |.+
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~----------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSF----------GTQPRNTISWSPDGRFLVLAGFGNLNGDL 127 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEee----------cCCCceEEEECCCCCEEEEEEccCCCcEE
Confidence 3465 9999999987654 466799999996 3444443 34567899999999999998754 569
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 002753 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (884)
Q Consensus 332 ~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~ 373 (884)
.+||+...+.+.+... ..++.++|+|+| +.+++++
T Consensus 128 ~~wd~~~~~~i~~~~~---~~~t~~~WsPdG----r~~~ta~ 162 (194)
T PF08662_consen 128 EFWDVRKKKKISTFEH---SDATDVEWSPDG----RYLATAT 162 (194)
T ss_pred EEEECCCCEEeecccc---CcEEEEEEcCCC----CEEEEEE
Confidence 9999998888877653 347888999999 8877665
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=3.1e-07 Score=94.32 Aligned_cols=173 Identities=18% Similarity=0.217 Sum_probs=108.1
Q ss_pred cCCCCcEEEEEcCCCCEEEEEecC-CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEE
Q 002753 254 LGSGDAVCASIAPEQQILAVGTRR-GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (884)
Q Consensus 254 ~~h~~~v~va~sp~~~~la~g~~d-g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~ 332 (884)
.||...+.+.+++||..+++++-+ ..|.|||.++ +..+..... -.|.+.-+.|||||..|.++.-|++.+
T Consensus 193 pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~--------glgg~slLkwSPdgd~lfaAt~davfr 263 (445)
T KOG2139|consen 193 PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPK--------GLGGFSLLKWSPDGDVLFAATCDAVFR 263 (445)
T ss_pred CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCccccccc--------CCCceeeEEEcCCCCEEEEecccceee
Confidence 567555559999999999998765 5899999998 554443322 467899999999999999999999999
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec-ceeEEEecCCceEEEEecCCcceEEEEee-cceeecccC
Q 002753 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGV 410 (884)
Q Consensus 333 vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg-~~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~ 410 (884)
+|...... .+.+ -.+.+| ++...|++.|..++.+..+ +..++.+.| ++....-.
T Consensus 264 lw~e~q~w--t~er--------------------w~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~- 319 (445)
T KOG2139|consen 264 LWQENQSW--TKER--------------------WILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLR- 319 (445)
T ss_pred eehhcccc--eecc--------------------eeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccC-
Confidence 99653221 1110 111122 2667888888888777765 456777777 43322111
Q ss_pred CCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCce
Q 002753 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 475 (884)
Q Consensus 411 d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~ 475 (884)
.+.+ |.++--.+ .+.. .+.-++++. .+++.++||+|.|.|+|+.-+.+-
T Consensus 320 ~~~~--k~~lliaD---------L~e~---ti~ag~~l~--cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 320 PQSI--KRVLLIAD---------LQEV---TICAGQRLC--CGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cccc--eeeeeecc---------chhh---hhhcCcccc--cCccceeeECCCCCEEEEEEcCCc
Confidence 1111 11110000 0000 000011111 467899999999999999876654
No 214
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.90 E-value=4.1e-08 Score=99.28 Aligned_cols=130 Identities=13% Similarity=0.191 Sum_probs=86.9
Q ss_pred ceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEEEEEcCCCCEEE-EEecCCeEEEEEccCCCcceEEEe
Q 002753 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVS 296 (884)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~va~sp~~~~la-~g~~dg~v~lw~~~~~~~~~~~l~ 296 (884)
+.++.++|+|+++++.+.- .+-+-|..+.+.. ..-.+.+.+.|..|...+. ....|+.|.+|++.. .+---.+.
T Consensus 11 ~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew~ckId 88 (447)
T KOG4497|consen 11 NPFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEWYCKID 88 (447)
T ss_pred CCceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeec-ceeEEEec
Confidence 3467789999998876543 3334444443221 1123444588888877655 456788999999976 33333444
Q ss_pred eccCCCCCCCCcCeEEEEECCCCC-EEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 002753 297 LYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
. -..++.+++|||||+ .|.+..-|-.|.||++.+..... -.|....+..++|+|++
T Consensus 89 e--------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 89 E--------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKTNVKGYAFHPDG 145 (447)
T ss_pred c--------CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--ecccccCceeEEECCCC
Confidence 3 467799999999995 55566778899999998765432 23334556788899988
No 215
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.88 E-value=8.8e-08 Score=108.85 Aligned_cols=231 Identities=15% Similarity=0.140 Sum_probs=150.6
Q ss_pred CCcEEEEeecCCccceeeecccccc---------cCCCCcEE-EEEcCC--CCEEEEEecCCeEEEEEccCCCcceEEEe
Q 002753 229 NGQLMSCSVSKKGLKLAEFIKIDKE---------LGSGDAVC-ASIAPE--QQILAVGTRRGVVELYDLAESASLIRTVS 296 (884)
Q Consensus 229 dG~~~~~~~~d~~i~~w~~~~~~~~---------~~h~~~v~-va~sp~--~~~la~g~~dg~v~lw~~~~~~~~~~~l~ 296 (884)
+..+++.|..+|.+-+||...+... ..|..++. +.|-.+ ..-+++++.||.|..|+++.-......+.
T Consensus 254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~ 333 (555)
T KOG1587|consen 254 DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLL 333 (555)
T ss_pred CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcc
Confidence 4456666667777778887765431 34666666 555443 34588899999999999875211111111
Q ss_pred ec---cCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCee--------EEEeccccccceeeeeecCCCCC
Q 002753 297 LY---DWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRL--------MSTIRQISLSSISSPIVKPNQDC 364 (884)
Q Consensus 297 ~~---~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~~~l--------~~tl~~~~~~~v~s~~~s~~~~~ 364 (884)
.. +.+....-...+++++|.| +-+.+++|.++|.|.-=+-.|... ......| .+.|.++.++|-..
T Consensus 334 ~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h-~g~v~~v~~nPF~~- 411 (555)
T KOG1587|consen 334 LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH-IGPVYAVSRNPFYP- 411 (555)
T ss_pred cccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc-CcceEeeecCCCcc-
Confidence 10 0111112345689999988 677899999999887744433221 1122223 56788888888762
Q ss_pred Cccceeecc--eeEEEecC-CceEEEEecCCcceE--EEEeecc--eeecccCCCCceeeeeeecCCeEEEEecCCCCce
Q 002753 365 KYEPLMSGT--SMMQWDEY-GYRLYAIEEGSSERV--LIFSFGK--CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL 437 (884)
Q Consensus 365 ~~~~l~sg~--~i~~W~~~-~~~l~~~~~~~~~~v--~~~~~~~--~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~ 437 (884)
..+++++ ++++|.-. ....+..+..+...+ .++++.+ .++++..||.+.+||+++...+
T Consensus 412 --k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~------------ 477 (555)
T KOG1587|consen 412 --KNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE------------ 477 (555)
T ss_pred --ceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC------------
Confidence 2233333 99999887 555555555556667 5555544 5678888999999999987763
Q ss_pred eEEEeeccc-ccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002753 438 KILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (884)
Q Consensus 438 ~w~~~~~p~-~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s 482 (884)
|. +..-+......+.++++|+.||+|...|.+ +|++..
T Consensus 478 -------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 478 -------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred -------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 32 222234566788999999999999999999 999854
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.88 E-value=7e-08 Score=103.68 Aligned_cols=97 Identities=13% Similarity=0.214 Sum_probs=75.2
Q ss_pred EEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc----cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcc
Q 002753 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (884)
Q Consensus 211 i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~ 286 (884)
+....+......-.++++||+.+|+-+.|+.+++++..+.+.+ .--..-.|++|||||++|++|++|.-|.||.+.
T Consensus 283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 3333333333233556889999999999999999988765433 122456789999999999999999999999998
Q ss_pred CCCcceEEEeeccCCCCCCCCcCeEEEEEC
Q 002753 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWT 316 (884)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~~l~~s 316 (884)
+ .+.+..-++ |...|..|+|.
T Consensus 363 e-rRVVARGqG--------HkSWVs~VaFD 383 (636)
T KOG2394|consen 363 E-RRVVARGQG--------HKSWVSVVAFD 383 (636)
T ss_pred c-ceEEEeccc--------cccceeeEeec
Confidence 8 677766666 99999999987
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=3.7e-07 Score=104.36 Aligned_cols=195 Identities=13% Similarity=0.106 Sum_probs=113.5
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEec---CCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEE-EEEcC
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS 328 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~---dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~La-sg~~d 328 (884)
..+...+. .+|||||+.||..+. +..|.+||+.+ +. .+.+.. +.+.+.+.+|||||+.|+ +.+.+
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~-~~~l~~--------~~g~~~~~~~SPDG~~la~~~~~~ 267 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQ-RELVGN--------FPGMTFAPRFSPDGRKVVMSLSQG 267 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-Cc-EEEeec--------CCCcccCcEECCCCCEEEEEEecC
Confidence 44555555 999999999998764 46899999976 43 333444 566778899999999876 55555
Q ss_pred Cc--EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc------eeEEEecCCceEEEEecCCcceE--EE
Q 002753 329 RG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERV--LI 398 (884)
Q Consensus 329 g~--v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~------~i~~W~~~~~~l~~~~~~~~~~v--~~ 398 (884)
+. |.+||+.++.+ ..+..+ .....++.|+|++ ..++..+ .+..|+..+++......+ .... ..
T Consensus 268 g~~~Iy~~d~~~~~~-~~Lt~~-~~~~~~~~~spDG----~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~ 340 (435)
T PRK05137 268 GNTDIYTMDLRSGTT-TRLTDS-PAIDTSPSYSPDG----SQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPV 340 (435)
T ss_pred CCceEEEEECCCCce-EEccCC-CCccCceeEcCCC----CEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeE
Confidence 55 66778887754 344443 3345678899998 5443222 456667666554433322 1122 33
Q ss_pred Eee-cceeecccCC-C--CceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCc
Q 002753 399 FSF-GKCCLNRGVS-G--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (884)
Q Consensus 399 ~~~-~~~~~s~~~d-~--~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg 474 (884)
+++ ++.++..+.+ + .+.++++..+.. ....+...+...+|||||+.|+..+.++
T Consensus 341 ~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~----------------------~~lt~~~~~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 341 WSPRGDLIAFTKQGGGQFSIGVMKPDGSGE----------------------RILTSGFLVEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCce----------------------EeccCCCCCCCCeECCCCCEEEEEEccC
Confidence 444 5554433222 1 122222111110 0111122356789999999988765532
Q ss_pred ------eE-EEEccCCcEEE
Q 002753 475 ------LI-LYDIRQKKWRV 487 (884)
Q Consensus 475 ------~i-iwd~~s~~w~~ 487 (884)
.+ ++|+.++.-+.
T Consensus 399 ~~~~~~~L~~~dl~g~~~~~ 418 (435)
T PRK05137 399 GSGGAPKLYTVDLTGRNERE 418 (435)
T ss_pred CCCCcceEEEEECCCCceEE
Confidence 34 66776655443
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=1.9e-07 Score=106.09 Aligned_cols=123 Identities=11% Similarity=0.096 Sum_probs=74.4
Q ss_pred EEEcCCcEEEEeecC-Cccceee--ecccc--cccCCCCcE-EEEEcCCCCEEEEEecC---CeEEEEEccCCCcceEEE
Q 002753 225 VLYSNGQLMSCSVSK-KGLKLAE--FIKID--KELGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTV 295 (884)
Q Consensus 225 ~~s~dG~~~~~~~~d-~~i~~w~--~~~~~--~~~~h~~~v-~va~sp~~~~la~g~~d---g~v~lw~~~~~~~~~~~l 295 (884)
.++|||+.++..+++ +..++|. ...++ .+..+.... ..+|+|||+.|+..+.+ ..|.+||+++ +. .+.+
T Consensus 293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~L 370 (429)
T PRK03629 293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVL 370 (429)
T ss_pred EECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEe
Confidence 357888866655543 3444553 22221 112222223 38899999999886544 3578888876 33 3333
Q ss_pred eeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCc---EEEEeccCCeeEEEeccccccceeeeeecC
Q 002753 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (884)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~---v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~ 360 (884)
.. .......+|||||+.|+.++.+++ +.++++.|+. ...+..+ ...+..++|+|
T Consensus 371 t~---------~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l~~~-~~~~~~p~Wsp 427 (429)
T PRK03629 371 TD---------TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPAT-DGQVKFPAWSP 427 (429)
T ss_pred CC---------CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eEECccC-CCCcCCcccCC
Confidence 32 112345789999999999998875 6777776553 4555554 44566777765
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.82 E-value=1.1e-08 Score=107.76 Aligned_cols=225 Identities=15% Similarity=0.181 Sum_probs=158.0
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 002753 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 257 ~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~ 336 (884)
.++..+.++.+|+.++.|+.-|.|..+|..+ ..+...+.. ...|.++.|-.+.+++|++-. +-+.|||-
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~v---------~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~ 198 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEINV---------METVRDVTFLHNEQFFAVAQK-KYVYVYDN 198 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeeeh---------hhhhhhhhhhcchHHHHhhhh-ceEEEecC
Confidence 3566689999999999999999999999987 565555554 567999999999999999876 78999998
Q ss_pred cCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceE--EEEee-cceeecccC
Q 002753 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGV 410 (884)
Q Consensus 337 ~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~ 410 (884)
.|-. ++.++.+ ..|..+.|-|.. ..+++++ -...-|...++++..+....+.+ ..-.+ ...+-.|..
T Consensus 199 ~GtE-lHClk~~--~~v~rLeFLPyH----fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs 271 (545)
T KOG1272|consen 199 NGTE-LHCLKRH--IRVARLEFLPYH----FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS 271 (545)
T ss_pred CCcE-Eeehhhc--Cchhhhcccchh----heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC
Confidence 7754 5556654 568888888875 5555554 33444666677665544333343 33334 445557888
Q ss_pred CCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEec
Q 002753 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG 489 (884)
Q Consensus 411 d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~ 489 (884)
.|++.+|.-....- .-+.+.|.+||+++|+.++|+|+|++|.|..+ +||+..-+ .+..
T Consensus 272 nGtVSlWSP~skeP--------------------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql~t 330 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEP--------------------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-QLHT 330 (545)
T ss_pred CceEEecCCCCcch--------------------HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-ccce
Confidence 88999998432221 24677899999999999999999999999999 99996532 1110
Q ss_pred CccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 002753 490 DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 490 ~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~ 528 (884)
....+....+...+..++++++ ...+.+|.-
T Consensus 331 ---~~tp~~a~~ls~SqkglLA~~~-----G~~v~iw~d 361 (545)
T KOG1272|consen 331 ---YRTPHPASNLSLSQKGLLALSY-----GDHVQIWKD 361 (545)
T ss_pred ---eecCCCccccccccccceeeec-----CCeeeeehh
Confidence 0111123345666777777743 245677764
No 220
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=3e-08 Score=107.21 Aligned_cols=265 Identities=14% Similarity=0.091 Sum_probs=164.2
Q ss_pred ccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEE--eecCCe
Q 002753 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKH 144 (884)
Q Consensus 67 ~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~ 144 (884)
+..+..++|.|-...|++++.+|+|.+|+++.... .... ..+....+.++.++|.|+ ..+++.
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-----s~~~----------~~epi~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-----SAEK----------DVEPILTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-----cccc----------ceeeeEEEecccCceEEEEecCCceE
Confidence 34556788999999999999999999999953211 0000 111112235677777765 456789
Q ss_pred EEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEE
Q 002753 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (884)
Q Consensus 145 llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (884)
++.|+.||.|+.|.... ...... .. +.. ...-.+.++...+..++|
T Consensus 359 ~ysgg~Dg~I~~w~~p~-n~dp~d-------s~-----------dp~-------vl~~~l~Ghtdavw~l~~-------- 404 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPP-NQDPDD-------SY-----------DPS-------VLSGTLLGHTDAVWLLAL-------- 404 (577)
T ss_pred EEeeccCceeeeeccCC-CCCccc-------cc-----------Ccc-------hhccceeccccceeeeee--------
Confidence 99999999999865431 111110 00 000 001234566666666665
Q ss_pred EEEcCCcEEEEeecCCccceeeeccccc--c---cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCC--CcceEEEee
Q 002753 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK--E---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES--ASLIRTVSL 297 (884)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~w~~~~~~~--~---~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~--~~~~~~l~~ 297 (884)
++....+++++.|+++++|+...... . ..|.-++.+++ ....++-...+...+.+.+.+. ...+..+..
T Consensus 405 --s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~--~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s 480 (577)
T KOG0642|consen 405 --SSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR--TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFES 480 (577)
T ss_pred --cccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee--ccchhHhhhhhcccccccchhhhhhhheeeccc
Confidence 44455566677788888887654333 1 23334444443 2333333344555565555541 222222222
Q ss_pred ccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---e
Q 002753 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (884)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~ 374 (884)
...+- ......+.-+.+.|.+.+..++.+|++|+++|...+.++.+...| ...++++++.|++ -.+++|+ .
T Consensus 481 ~~~~~-~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~-~~svtslai~~ng----~~l~s~s~d~s 554 (577)
T KOG0642|consen 481 SASPG-PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH-KDSVTSLAIDPNG----PYLMSGSHDGS 554 (577)
T ss_pred cCCCc-ccccCccceEEecCCCCeeEecccCCceecccccccccchheeec-cceecceeecCCC----ceEEeecCCce
Confidence 11110 011234677889999999999999999999999999998888877 7889999999998 8888886 7
Q ss_pred eEEEecCCceEEEEec
Q 002753 375 MMQWDEYGYRLYAIEE 390 (884)
Q Consensus 375 i~~W~~~~~~l~~~~~ 390 (884)
+.+|......+.....
T Consensus 555 v~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 555 VRLWKLDVKTCVLEST 570 (577)
T ss_pred eehhhccchheeeccc
Confidence 8888876655544433
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.81 E-value=3.8e-07 Score=106.90 Aligned_cols=258 Identities=14% Similarity=0.117 Sum_probs=160.3
Q ss_pred CCcceEEEEEcCCcEEEEeecCCccceeeecccccc----------c-CCCCcEEEEEcCCCCEEEEEecCCeEEEEEcc
Q 002753 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----------L-GSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (884)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----------~-~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~ 286 (884)
...+..++.++++.+++++++||++++|+..+...- . ..+...++..-+.+..+|+|+.||.|++.+++
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 333455566677799999999999999998753221 1 11222336677789999999999999999997
Q ss_pred CCCcceEEEeeccCCCCCCCCcCeEEE-EECC-CCC-EEEEEEcCCcEEEEeccCCeeEEEecc-ccccceeeeeecCCC
Q 002753 287 ESASLIRTVSLYDWGYSMDDTGPVSCI-AWTP-DNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQ 362 (884)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~~l-~~sp-dg~-~Lasg~~dg~v~vW~~~~~~l~~tl~~-~~~~~v~s~~~s~~~ 362 (884)
.+............+.. ...|.|.+| +|.. ++. .|+.+...+.+..||+.......+++. ...+.|++++.+|-+
T Consensus 1129 ~~~~~~~~~~~~ri~n~-~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~ 1207 (1431)
T KOG1240|consen 1129 HYNVSKRVATQVRIPNL-KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWC 1207 (1431)
T ss_pred ccccccceeeeeecccc-cCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCc
Confidence 62111111110000000 123445444 4544 344 677788889999999987665555543 113579999999887
Q ss_pred CCCccceeecc---eeEEEecCCceEEEEecC-CcceE--EEEee--c--ceee-ccc-CCCCceeeeeeecCCeEEEEe
Q 002753 363 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEG-SSERV--LIFSF--G--KCCL-NRG-VSGMTYARQVIYGEDRLLVVQ 430 (884)
Q Consensus 363 ~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~-~~~~v--~~~~~--~--~~~~-s~~-~d~~~~~w~l~~~~~~~~i~~ 430 (884)
.-++.|. ...+||.+=..++..+.- +...+ +.+.+ . ...+ +++ ..+.+..|++..|..+-.+..
T Consensus 1208 ----~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1208 ----NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred ----eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 6666664 789999987766666532 22233 33333 2 2333 344 577899999999876655555
Q ss_pred cCCCCceeEEEeecccc--cccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002753 431 SEDTDELKILHLNLPVS--YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (884)
Q Consensus 431 ~~~~~~~~w~~~~~p~~--~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~ 483 (884)
+++.+.+.|.. |.. -.-+.-+....++..-+..+.+||.|+.+ .||...-
T Consensus 1284 s~~~p~ls~~~---Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1284 SDGAPILSYAL---PSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred CCCCcchhhhc---ccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 55666555521 211 00122234556666667789999999999 9998653
No 222
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.78 E-value=1.2e-06 Score=87.61 Aligned_cols=194 Identities=10% Similarity=0.060 Sum_probs=123.4
Q ss_pred CCCcEE-EEEcC-CCCEEEEEecCCeEEEEEccCCCc--ceEEEeeccCCCCCCCCcCeEEEEECCCCC-EEEEEEcCCc
Q 002753 256 SGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRG 330 (884)
Q Consensus 256 h~~~v~-va~sp-~~~~la~g~~dg~v~lw~~~~~~~--~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~dg~ 330 (884)
+..+++ ..||. +-++|.+.+-|-|+.|||+..... ....+-. |..+|..++|+.+|. .+|+.+.||.
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA--------HDKEV~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA--------HDKEVYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe--------cCcceeEEEeccCccceEEEecCCCc
Confidence 444555 67775 678999999999999999988211 2234444 999999999999765 7899999999
Q ss_pred EEEEeccCCeeEEEecccc--ccceeeeeecCCCCCCc-c-ceeecceeEEEecCC-ceEEEEecCCcceEEEEee----
Q 002753 331 LTVWSVSGCRLMSTIRQIS--LSSISSPIVKPNQDCKY-E-PLMSGTSMMQWDEYG-YRLYAIEEGSSERVLIFSF---- 401 (884)
Q Consensus 331 v~vW~~~~~~l~~tl~~~~--~~~v~s~~~s~~~~~~~-~-~l~sg~~i~~W~~~~-~~l~~~~~~~~~~v~~~~~---- 401 (884)
+|++|+..-.-...+-+.. .....-+++++.+. ++ . ..+.+..+.+-|.+- ...+..+++|...|-.+.+
T Consensus 221 vRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 221 VRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred EEEEEecccccceEEecCCCCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCC
Confidence 9999997643222222210 11222233333321 11 1 112223666666654 3345667889888855444
Q ss_pred cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecc-cccccCCCceEEEEEcc-CCCEEEEEeCCc
Q 002753 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAASK-DGMFLAVAGLHG 474 (884)
Q Consensus 402 ~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p-~~~~~~~~~I~~va~S~-dG~~lavag~dg 474 (884)
...+.|++.|....+|++.+.... +.+ -| ..|. ....|+.+.|++ .+.++|++....
T Consensus 300 ~~hictaGDD~qaliWDl~q~~~~-----~~~----------dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 300 SSHICTAGDDCQALIWDLQQMPRE-----NGE----------DPILAYT-AGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred CceeeecCCcceEEEEeccccccc-----CCC----------Cchhhhh-ccceeeeeeecccCCCEEEEEecCe
Confidence 567889999999999998764331 000 02 2333 345799999985 477888887554
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=7.7e-07 Score=101.25 Aligned_cols=72 Identities=25% Similarity=0.307 Sum_probs=51.1
Q ss_pred CCCCcEE-EEEcCCCCEEEEEecC---CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEE-EEEcCC
Q 002753 255 GSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKSR 329 (884)
Q Consensus 255 ~h~~~v~-va~sp~~~~la~g~~d---g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~La-sg~~dg 329 (884)
.+...+. .+|||||+.||..+.+ ..|.+||+.+ ++.. .+.. ..+.+.+.+|||||+.|+ +.+.+|
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~-~l~~--------~~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRR-VVAN--------FKGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEE-Eeec--------CCCCccceEECCCCCEEEEEEccCC
Confidence 3444454 8999999999987643 3699999986 4432 3332 345567899999999887 456778
Q ss_pred cEEEEec
Q 002753 330 GLTVWSV 336 (884)
Q Consensus 330 ~v~vW~~ 336 (884)
...+|.+
T Consensus 263 ~~~Iy~~ 269 (427)
T PRK02889 263 NSQIYTV 269 (427)
T ss_pred CceEEEE
Confidence 7777765
No 224
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.77 E-value=3.2e-07 Score=92.97 Aligned_cols=145 Identities=17% Similarity=0.232 Sum_probs=104.3
Q ss_pred ccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccccc------ccCCCCcEE-EEEcCCCCEEEEEecCCeEE
Q 002753 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK------ELGSGDAVC-ASIAPEQQILAVGTRRGVVE 281 (884)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~------~~~h~~~v~-va~sp~~~~la~g~~dg~v~ 281 (884)
.+|++++| ++|+..++++.+..++.+......+. +..|...+. +.|+|..+.|++|+.|..-.
T Consensus 11 ~pitchAw----------n~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 11 EPITCHAW----------NSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred Cceeeeee----------cCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence 34667665 56677777666666666554443332 256788887 99999999999999999999
Q ss_pred EEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeE---EEeccccccceeeeee
Q 002753 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM---STIRQISLSSISSPIV 358 (884)
Q Consensus 282 lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~---~tl~~~~~~~v~s~~~ 358 (884)
||...+++.-..++.... +.+.++++.|+|.++.+|+|+.-+.|.||-.++..-. ..++....+.|.++.+
T Consensus 81 Vw~~~~~~~WkptlvLlR------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLR------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred ccccCCCCeeccceeEEE------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence 999854354444433322 7889999999999999999999999999987654322 1122222567899999
Q ss_pred cCCCCCCccceeecc
Q 002753 359 KPNQDCKYEPLMSGT 373 (884)
Q Consensus 359 s~~~~~~~~~l~sg~ 373 (884)
+|+. -.++.|+
T Consensus 155 hpnn----VLlaaGs 165 (361)
T KOG1523|consen 155 HPNN----VLLAAGS 165 (361)
T ss_pred cCCc----ceecccc
Confidence 9997 6666665
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=1e-06 Score=95.64 Aligned_cols=129 Identities=21% Similarity=0.251 Sum_probs=93.0
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCc-----CeEEEEECCCCCEEEEEEcCCcE
Q 002753 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG-----PVSCIAWTPDNSAFAVGWKSRGL 331 (884)
Q Consensus 258 ~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~-----~V~~l~~spdg~~Lasg~~dg~v 331 (884)
..+. |.+|+-..+||+|+.||.|..||..+ .+.+.++..... -..|.+ .|++++|+.||-.+++|..+|.+
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v 252 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV 252 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchh-hhhheeeecccc--cCCCccccccCcceEEEecCCceeEEeeccCCcE
Confidence 4555 89999999999999999999999987 444444433211 011444 49999999999999999999999
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--eeEEEecCCceEEEEecC
Q 002753 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEG 391 (884)
Q Consensus 332 ~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~--~i~~W~~~~~~l~~~~~~ 391 (884)
.++|+...+.+..-.....-.+..+.|-+.+. ...++|.. .+++|+..+++.......
T Consensus 253 ~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~--q~~v~S~Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 253 LIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ--QNKVVSMDKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred EEEEcccCCceeecccCCccceeeecccccCC--CceEEecchHHhhhcccccCCceeeccc
Confidence 99999887765443332234567777766531 13444443 788999999888777644
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.76 E-value=1e-05 Score=89.44 Aligned_cols=295 Identities=13% Similarity=0.089 Sum_probs=150.9
Q ss_pred ceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEEEEEcCCCCEEEEEe-cCCeEEEEEccCCCcceEEEe
Q 002753 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVS 296 (884)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~va~sp~~~~la~g~-~dg~v~lw~~~~~~~~~~~l~ 296 (884)
...+.+++||+.+.+...|+.+.++|..+.+.. ..-..+..+++|+||+++++++ .++++.++|.++ .+.++.+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeecc
Confidence 344668999998888888899988988776543 2223455699999999998775 679999999988 77777766
Q ss_pred eccCCCCCCCCcCeEEEEECCCCCEEEEEEcC-CcEEEEeccCCe--eEEEeccccccceeeeeecCCCCCCccceeecc
Q 002753 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVSGCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (884)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d-g~v~vW~~~~~~--l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~ 373 (884)
....+... ....+..+--+|.+..++..-.| +.|.+-|..... ....+.. ........++|++ ++++.+.
T Consensus 118 ~~~~~~~~-~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~--g~~~~D~~~dpdg----ry~~va~ 190 (369)
T PF02239_consen 118 TGGMPVDG-PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV--GRFPHDGGFDPDG----RYFLVAA 190 (369)
T ss_dssp --EE-TTT-S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTS----SEEEEEE
T ss_pred cccccccc-cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc--cccccccccCccc----ceeeecc
Confidence 53222111 34567888889999877777665 656555655432 2222221 1223445678887 6655432
Q ss_pred ----eeEEEecCCceEEEEecC----CcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCC----CceeEEE
Q 002753 374 ----SMMQWDEYGYRLYAIEEG----SSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT----DELKILH 441 (884)
Q Consensus 374 ----~i~~W~~~~~~l~~~~~~----~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~----~~~~w~~ 441 (884)
.+.+++..++++...... |..+...+...+. -.+|..........-.-+.+. +...|+.
T Consensus 191 ~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~---------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 191 NGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF---------GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp GGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT---------EEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred cccceeEEEeeccceEEEEeeccccccccccccccCCCc---------ceEEeeccccceecccccCCccccchhhcCeE
Confidence 777888888877655421 2223333322110 012322222221111111111 1223433
Q ss_pred eecccccccCCCceEEEEEccCCCEEEEE---e-CCceE-EEEccCCcEEEecCccceeeeEEEEEEEe--CCEEEEEEE
Q 002753 442 LNLPVSYISQNWPVQHVAASKDGMFLAVA---G-LHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNY 514 (884)
Q Consensus 442 ~~~p~~~~~~~~~I~~va~S~dG~~lava---g-~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~--~~~lv~~~~ 514 (884)
++- ......+ ..+..+||++++++. + ..+.+ ++|.++-+- ...........+.++.|. ++.+-++.+
T Consensus 262 v~~---I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~--~~~i~~~~~~~~~h~ef~~dG~~v~vS~~ 335 (369)
T PF02239_consen 262 VKT---IPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV--VKTITPGPGKRVVHMEFNPDGKEVWVSVW 335 (369)
T ss_dssp EEE---EE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE--EE-HHHHHT--EEEEEE-TTSSEEEEEEE
T ss_pred EEE---EECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce--eEEEeccCCCcEeccEECCCCCEEEEEEe
Confidence 321 2223344 678889999999999 4 44677 999988632 111111111226677886 455655555
Q ss_pred ecCCCeEEEEEeeCCCCCCcceEEEEecCC
Q 002753 515 IDSSNTYELLFYPRYHLDQSSLLCRKSLLA 544 (884)
Q Consensus 515 ~~~~~~~elr~y~~~~l~~~~~l~~~~~~~ 544 (884)
..++ +|.+|+...+ .++.+.++++
T Consensus 336 ~~~~---~i~v~D~~Tl---~~~~~i~~~t 359 (369)
T PF02239_consen 336 DGNG---AIVVYDAKTL---KEKKRIPVPT 359 (369)
T ss_dssp --TT---EEEEEETTTT---EEEEEEE--S
T ss_pred cCCC---EEEEEECCCc---EEEEEEEeeC
Confidence 3322 8889987533 3445555444
No 227
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.74 E-value=2.3e-06 Score=86.28 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=51.9
Q ss_pred EEEEecCeEEEEEccCeEEEEecCCcee-EEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002753 25 IYFKVNNGLLLIASPCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (884)
Q Consensus 25 v~fspdg~lla~~t~~~v~IW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~ 99 (884)
++.+.||++||++.+..|.|=..+..-. .+++..-.. +.+-.-..++||||+..||.+.+.|+|++||+...
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpk---D~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPK---DPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCC---CCCchheEEEECCCCcEEEEEcCCCeEEEEecccc
Confidence 4578999999999999999987742211 122221111 12233368999999999999999999999999643
No 228
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=7.2e-06 Score=89.30 Aligned_cols=145 Identities=17% Similarity=0.266 Sum_probs=97.5
Q ss_pred CCcEEEEEcCCCC-EEEEEe--cC---------CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEE
Q 002753 257 GDAVCASIAPEQQ-ILAVGT--RR---------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (884)
Q Consensus 257 ~~~v~va~sp~~~-~la~g~--~d---------g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Las 324 (884)
.+.+.+.||+.|. +|+..+ -| .++.+.+++. .+..-.+. -.|+|.++.|+|+|+-+++
T Consensus 218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s~~V~L~---------k~GPVhdv~W~~s~~EF~V 287 (566)
T KOG2315|consen 218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ESVSVPLL---------KEGPVHDVTWSPSGREFAV 287 (566)
T ss_pred cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-ceEEEecC---------CCCCceEEEECCCCCEEEE
Confidence 3455578888775 333222 22 2455555542 22222222 4799999999999987777
Q ss_pred EE--cCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc------eeEEEecCCceEEEEecCCcceE
Q 002753 325 GW--KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERV 396 (884)
Q Consensus 325 g~--~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~------~i~~W~~~~~~l~~~~~~~~~~v 396 (884)
.+ .=-.+.++|+.+.-.+ .+. .+.-+.+.|+|.| ..++-++ .+-+||..+.+++.........+
T Consensus 288 vyGfMPAkvtifnlr~~~v~-df~---egpRN~~~fnp~g----~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~ 359 (566)
T KOG2315|consen 288 VYGFMPAKVTIFNLRGKPVF-DFP---EGPRNTAFFNPHG----NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV 359 (566)
T ss_pred EEecccceEEEEcCCCCEeE-eCC---CCCccceEECCCC----CEEEEeecCCCCCceEEEeccchhhccccccCCceE
Confidence 54 4468999999876543 333 3456788899998 5544322 88999999999988887777788
Q ss_pred EEEee-cceeecccC------CCCceeeee
Q 002753 397 LIFSF-GKCCLNRGV------SGMTYARQV 419 (884)
Q Consensus 397 ~~~~~-~~~~~s~~~------d~~~~~w~l 419 (884)
..+++ |..++|+.. |+.+++|++
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 89988 887776543 556666664
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=7.9e-07 Score=101.09 Aligned_cols=207 Identities=14% Similarity=0.130 Sum_probs=116.0
Q ss_pred eEEEEEcCCcEEEEeec---CCccceeeeccccc--ccCCCCcE-EEEEcCCCCEEEEE-ecCC--eEEEEEccCCCcce
Q 002753 222 LLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVG-TRRG--VVELYDLAESASLI 292 (884)
Q Consensus 222 ~~~~~s~dG~~~~~~~~---d~~i~~w~~~~~~~--~~~h~~~v-~va~sp~~~~la~g-~~dg--~v~lw~~~~~~~~~ 292 (884)
....++|||+.++..+. +..+.+++...++. +....... ..+|||||+.||.. +.+| .|.+||+++ +..
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~~- 279 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI- 279 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CCE-
Confidence 34556888887765432 22355666554432 22222222 37999999988865 4455 588888876 433
Q ss_pred EEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC-CcEEEE--eccCCeeEEEeccccccceeeeeecCCCCCCccce
Q 002753 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVW--SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (884)
Q Consensus 293 ~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d-g~v~vW--~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l 369 (884)
..+.. +...+...+|+|||+.|+..+.+ +...+| ++.++.. ..+... ......+.++|++ ..+
T Consensus 280 ~~lt~--------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~SpDG----~~I 345 (429)
T PRK03629 280 RQVTD--------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG----KFM 345 (429)
T ss_pred EEccC--------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC-CCCccCEEECCCC----CEE
Confidence 33332 34457789999999998877754 455566 5556543 333332 2235568899998 554
Q ss_pred eecc------eeEEEecCCceEEEEecCCcceEEEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEe
Q 002753 370 MSGT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (884)
Q Consensus 370 ~sg~------~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~ 442 (884)
+... .+..|+..+++...........-..+++ ++.++..+.++....+.+..-+.+
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~----------------- 408 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR----------------- 408 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-----------------
Confidence 3221 4667887777654433222111234445 666666555554322222211110
Q ss_pred ecccccccCCCceEEEEEcc
Q 002753 443 NLPVSYISQNWPVQHVAASK 462 (884)
Q Consensus 443 ~~p~~~~~~~~~I~~va~S~ 462 (884)
.+..+.+|.+.++..+|||
T Consensus 409 -~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 -FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -CeEECccCCCCcCCcccCC
Confidence 1334445667777888886
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=1.1e-06 Score=100.20 Aligned_cols=192 Identities=15% Similarity=0.151 Sum_probs=109.4
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecC---CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEE-EEEcC
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS 328 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~d---g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~La-sg~~d 328 (884)
..+...+. .+|+|||+.||..+.+ ..|.+||+.+ +.. ..+.. ..+...+.+|||||+.|+ +.+.+
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~--------~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVAS--------FRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEecc--------CCCCccCceECCCCCEEEEEEeCC
Confidence 34444454 8999999999987743 4699999976 432 23333 344556789999999776 44555
Q ss_pred C--cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc------eeEEEecCCceEEEEe-cCCcceEEEE
Q 002753 329 R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIE-EGSSERVLIF 399 (884)
Q Consensus 329 g--~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~------~i~~W~~~~~~l~~~~-~~~~~~v~~~ 399 (884)
| .|.+|++.++.. ..+..+ .....++.|+|++ ..++..+ .+..++..+++..... .+....-..+
T Consensus 270 g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~spDG----~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~ 343 (433)
T PRK04922 270 GNPEIYVMDLGSRQL-TRLTNH-FGIDTEPTWAPDG----KSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASV 343 (433)
T ss_pred CCceEEEEECCCCCe-EECccC-CCCccceEECCCC----CEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEE
Confidence 5 499999988764 334333 3345678899998 5444222 3555565555443222 2211111345
Q ss_pred ee-cceeecccCC-C--CceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCC--
Q 002753 400 SF-GKCCLNRGVS-G--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH-- 473 (884)
Q Consensus 400 ~~-~~~~~s~~~d-~--~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~d-- 473 (884)
++ ++.++..+.+ + .+.+|++..+..+ .+. +.......+|||||++++.++.+
T Consensus 344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~---------------------~Lt-~~~~~~~p~~spdG~~i~~~s~~~g 401 (433)
T PRK04922 344 SPDGKKIAMVHGSGGQYRIAVMDLSTGSVR---------------------TLT-PGSLDESPSFAPNGSMVLYATREGG 401 (433)
T ss_pred CCCCCEEEEEECCCCceeEEEEECCCCCeE---------------------ECC-CCCCCCCceECCCCCEEEEEEecCC
Confidence 55 5555433222 2 2444443222211 111 11123457899999998887764
Q ss_pred -ceE-EEEccCC
Q 002753 474 -GLI-LYDIRQK 483 (884)
Q Consensus 474 -g~i-iwd~~s~ 483 (884)
+.+ +++...+
T Consensus 402 ~~~L~~~~~~g~ 413 (433)
T PRK04922 402 RGVLAAVSTDGR 413 (433)
T ss_pred ceEEEEEECCCC
Confidence 234 6666543
No 231
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.68 E-value=2.4e-05 Score=95.88 Aligned_cols=298 Identities=18% Similarity=0.163 Sum_probs=159.0
Q ss_pred CCccEEEEEEcCCcceEEEEEcCCcEEEEee----cCCccceeeecccccccCCCCcEEEEEcCCCCEEEEEecCCeEEE
Q 002753 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSV----SKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (884)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~----~d~~i~~w~~~~~~~~~~h~~~v~va~sp~~~~la~g~~dg~v~l 282 (884)
....|+++.|-+..+..++++.+|.++.+.. .+..+.+.... -.+..+++||||+.+||..+.+|++.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-------d~GI~a~~WSPD~Ella~vT~~~~l~~ 146 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV-------DSGILAASWSPDEELLALVTGEGNLLL 146 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE-------cCcEEEEEECCCcCEEEEEeCCCEEEE
Confidence 3567999999999998999999999988733 22222221111 123445999999999999999999877
Q ss_pred EEccCC----------------------CcceEEEeecc---------CCCCC-------CCCcCeEEEEECCCCCEEEE
Q 002753 283 YDLAES----------------------ASLIRTVSLYD---------WGYSM-------DDTGPVSCIAWTPDNSAFAV 324 (884)
Q Consensus 283 w~~~~~----------------------~~~~~~l~~~~---------~~~~~-------~h~~~V~~l~~spdg~~Las 324 (884)
-+-+-+ |+.-..++|.. -+..+ .+...-..++|..||.++|+
T Consensus 147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred EeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEE
Confidence 432110 00001111100 00000 01223467999999999999
Q ss_pred EEc---C---CcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcc--eE
Q 002753 325 GWK---S---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSE--RV 396 (884)
Q Consensus 325 g~~---d---g~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~--~v 396 (884)
.+- + +.+|||+-.| .+..+-+.- .+-- ..+.|.+.|. ++...+.+.+ .|
T Consensus 227 ss~~~~~~~~R~iRVy~ReG-~L~stSE~v-~gLe--------------------~~l~WrPsG~-lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSREG-ELQSTSEPV-DGLE--------------------GALSWRPSGN-LIASSQRLPDRHDV 283 (928)
T ss_pred EEEEcCCCceeEEEEECCCc-eEEeccccC-CCcc--------------------CCccCCCCCC-EEEEEEEcCCCcEE
Confidence 885 2 4689998874 343332210 1111 2334554432 2222111111 11
Q ss_pred EEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE
Q 002753 397 LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (884)
Q Consensus 397 ~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i 476 (884)
.-|.- +| +..++ +.+|. ......|..++|++|+..||+--.|..-
T Consensus 284 vFfEr---------NG------Lrhge------------------F~l~~--~~~~~~v~~l~Wn~ds~iLAv~~~~~vq 328 (928)
T PF04762_consen 284 VFFER---------NG------LRHGE------------------FTLRF--DPEEEKVIELAWNSDSEILAVWLEDRVQ 328 (928)
T ss_pred EEEec---------CC------cEeee------------------EecCC--CCCCceeeEEEECCCCCEEEEEecCCce
Confidence 11111 00 11111 11121 2234568999999999999999988833
Q ss_pred EEEccCCcEEEecCccceeeeE----EEEEEEeC---CEEEEEEEecCC--------------------------CeEEE
Q 002753 477 LYDIRQKKWRVFGDITQEQKIQ----SKGLLWLG---KIIVVCNYIDSS--------------------------NTYEL 523 (884)
Q Consensus 477 iwd~~s~~w~~f~~~~~e~~~~----v~~~~W~~---~~lv~~~~~~~~--------------------------~~~el 523 (884)
+|-+..-.|.+= ||-.+. +..+.|.. ..+.+.+....- +...+
T Consensus 329 LWt~~NYHWYLK----qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~l 404 (928)
T PF04762_consen 329 LWTRSNYHWYLK----QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKL 404 (928)
T ss_pred EEEeeCCEEEEE----EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeE
Confidence 999999999762 222111 12356652 223322110000 11233
Q ss_pred EEeeCC--CCCCcceEEEEecCCccEEEEccCC--EEEEEEcCCeEEEEEEEEe
Q 002753 524 LFYPRY--HLDQSSLLCRKSLLAKPIVMDVYED--YILVTYRPFDVHIFHVKLF 573 (884)
Q Consensus 524 r~y~~~--~l~~~~~l~~~~~~~~~~~~~~~~~--~llv~~~~~~i~i~~~~~~ 573 (884)
.+.+.. .-..-.-.....+++++..+.+..+ .++|.+.|+.+.+|.....
T Consensus 405 llTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 405 LLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 333321 0001111235567777766665433 4888899999999997643
No 232
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=2.5e-07 Score=99.50 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=97.8
Q ss_pred ccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc----cCCCCcEE-EEEcC--CCCEEEEE
Q 002753 202 DHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAP--EQQILAVG 274 (884)
Q Consensus 202 ~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~~h~~~v~-va~sp--~~~~la~g 274 (884)
..+.+|.++|.+++| +.||.++++|++|..+.+||...-+.+ .||..-+. +.|=| ..+++++|
T Consensus 44 ~eL~GH~GCVN~LeW----------n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEW----------NADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred hhhccccceecceee----------cCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEec
Confidence 456789999999997 789999999999999999998754443 68887665 88888 46799999
Q ss_pred ecCCeEEEEEccCC---------CcceEEEeeccCCCCCCCCcCeEEEEECCCC-CEEEEEEcCCcEEEEeccC
Q 002753 275 TRRGVVELYDLAES---------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSG 338 (884)
Q Consensus 275 ~~dg~v~lw~~~~~---------~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg-~~Lasg~~dg~v~vW~~~~ 338 (884)
..|..|+|||++.. ....+.+.. |+..|..++-.|+| ..+-++++||+++-+|+..
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~c--------ht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSC--------HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhhh--------hhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 99999999999841 112233333 89999999999999 8999999999999999965
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=1.1e-06 Score=100.12 Aligned_cols=151 Identities=14% Similarity=0.161 Sum_probs=91.4
Q ss_pred EEEEcCCcEEEEeecC---Cccceeeecccccc--cCCCCc-EEEEEcCCCCEEE-EEecCCeEEEEEccCCCcceEEEe
Q 002753 224 FVLYSNGQLMSCSVSK---KGLKLAEFIKIDKE--LGSGDA-VCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVS 296 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d---~~i~~w~~~~~~~~--~~h~~~-v~va~sp~~~~la-~g~~dg~v~lw~~~~~~~~~~~l~ 296 (884)
..++|||+.++..+.+ ..+.+|+...++.. ...... ...+|||||+.|| +.+.+|...||.++..++..+.+.
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 4468889877765532 23567777655432 222222 3489999999887 467788888887654234444443
Q ss_pred eccCCCCCCCCcCeEEEEECCCCCEEEEEEc-CCcEEEEec--cCCeeEEEeccccccceeeeeecCCCCCCccceeecc
Q 002753 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSV--SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (884)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-dg~v~vW~~--~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~ 373 (884)
. +.+.+....|||||+.|+..+. +|...+|.+ .++.. ..+... .....++.|+|++ +.++...
T Consensus 281 ~--------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~-g~~~~~~~~SpDG----~~Ia~~s 346 (427)
T PRK02889 281 Q--------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFT-GSYNTSPRISPDG----KLLAYIS 346 (427)
T ss_pred C--------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecC-CCCcCceEECCCC----CEEEEEE
Confidence 3 4555677899999998886654 467777765 44432 222111 1223467899988 5544221
Q ss_pred ------eeEEEecCCceEEEE
Q 002753 374 ------SMMQWDEYGYRLYAI 388 (884)
Q Consensus 374 ------~i~~W~~~~~~l~~~ 388 (884)
.+.+|+..+++....
T Consensus 347 ~~~g~~~I~v~d~~~g~~~~l 367 (427)
T PRK02889 347 RVGGAFKLYVQDLATGQVTAL 367 (427)
T ss_pred ccCCcEEEEEEECCCCCeEEc
Confidence 477888776655433
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=5.6e-06 Score=90.06 Aligned_cols=255 Identities=14% Similarity=0.157 Sum_probs=145.9
Q ss_pred CCceEEEEEecCeEEE-EEc-cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEE
Q 002753 20 SSQQIIYFKVNNGLLL-IAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (884)
Q Consensus 20 ~~~~vv~fspdg~lla-~~t-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~ 97 (884)
....-|.+||||+|+. +++ .=.|.+|++. .. --.+.|..++ ..+...-.|-|=+.++.--.|.+|.+-.--
T Consensus 52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydla-nL--SLKFERhlDa----e~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLA-NL--SLKFERHLDA----EVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred cccceeEecCCCcEEEEecccCCceEEEEcc-cc--eeeeeecccc----cceeEEEeccchhhheEeecCceeeehhhc
Confidence 3344578999999864 444 4589999996 32 2345665543 222233345555555555566655432110
Q ss_pred ecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCc
Q 002753 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (884)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~ 177 (884)
+ .++ .-+++--+.+ .+...-+..|+++.....|+++..+. +.-+
T Consensus 125 -G---~hy-----------------~~RIP~~GRD---m~y~~~scDly~~gsg~evYRlNLEq--GrfL---------- 168 (703)
T KOG2321|consen 125 -G---RHY-----------------RTRIPKFGRD---MKYHKPSCDLYLVGSGSEVYRLNLEQ--GRFL---------- 168 (703)
T ss_pred -C---eee-----------------eeecCcCCcc---ccccCCCccEEEeecCcceEEEEccc--cccc----------
Confidence 0 000 0011111111 11122234577777777887766542 1111
Q ss_pred cceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc----
Q 002753 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---- 253 (884)
Q Consensus 178 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---- 253 (884)
.++....+.+..+. +++-..++++|..++.+..||.......
T Consensus 169 ------------------------~P~~~~~~~lN~v~----------in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 169 ------------------------NPFETDSGELNVVS----------INEEHGLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred ------------------------cccccccccceeee----------ecCccceEEecccCceEEEecchhhhhheeee
Confidence 01111123344444 4566667777777888888886643221
Q ss_pred -----cCC-----CCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCC--CC
Q 002753 254 -----LGS-----GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NS 320 (884)
Q Consensus 254 -----~~h-----~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd--g~ 320 (884)
..| ...++ ++|+.+|-.+|+|+.+|.|.+||+.. .+++. .+.+ +..-+|..+.|-+. +.
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa-~~pl~-~kdh------~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA-SKPLL-VKDH------GYELPIKKLDWQDTDQQN 286 (703)
T ss_pred cccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc-CCcee-eccc------CCccceeeecccccCCCc
Confidence 111 12355 99999999999999999999999997 44333 2220 03457899999775 45
Q ss_pred EEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 002753 321 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 321 ~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
.+++... ..+++|+-.+|+.+..+.- +..++.+.+-|++
T Consensus 287 ~v~S~Dk-~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~s 325 (703)
T KOG2321|consen 287 KVVSMDK-RILKIWDECTGKPMASIEP--TSDLNDFCFVPGS 325 (703)
T ss_pred eEEecch-HHhhhcccccCCceeeccc--cCCcCceeeecCC
Confidence 6666655 8999999999988877654 2345555554543
No 235
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.56 E-value=2.8e-05 Score=84.08 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=60.1
Q ss_pred EEEcCCCCEEEEEe----------cCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCC-EEEEEE-cCC
Q 002753 262 ASIAPEQQILAVGT----------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KSR 329 (884)
Q Consensus 262 va~sp~~~~la~g~----------~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~-~dg 329 (884)
++++|+++.+.+.. ..+.|.++|..+ .+.+..+.. ...+..+++||||+ .|.+.. .++
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v---------G~~~~~iavS~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL---------GHEIDSINVSQDAKPLLYALSTGDK 322 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC---------CCceeeEEECCCCCeEEEEeCCCCC
Confidence 89999998887743 124799999887 677776664 34688999999999 887666 568
Q ss_pred cEEEEeccCCeeEEEecc
Q 002753 330 GLTVWSVSGCRLMSTIRQ 347 (884)
Q Consensus 330 ~v~vW~~~~~~l~~tl~~ 347 (884)
.|.+.|+.+++.+.++..
T Consensus 323 ~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 323 TLYIFDAETGKELSSVNQ 340 (352)
T ss_pred cEEEEECcCCeEEeeecc
Confidence 899999999998888743
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.55 E-value=2.7e-05 Score=86.17 Aligned_cols=283 Identities=12% Similarity=0.083 Sum_probs=139.2
Q ss_pred EEEEecCeEEEEE-ccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEe-cCcEEEEEEEEecCce
Q 002753 25 IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKS 102 (884)
Q Consensus 25 v~fspdg~lla~~-t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t-~~g~l~l~~l~~~~~~ 102 (884)
+.|+|||+++.++ .++.|.++|.. ....++...-. +.-..+++||||++++++. ..+.+.++|.++-...
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~-~~~~v~~i~~G-------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLA-TGKVVATIKVG-------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETT-SSSEEEEEE-S-------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred EEecCCCCEEEEEcCCCeEEEEECC-cccEEEEEecC-------CCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 6799999976666 47899999995 55555554321 2236799999999999876 5788999986432211
Q ss_pred eecCCCCCCCceeeeeeeeeeccccccccceeEEEE--eecCCeEEEEecC-CcEEEEecCCccccceeeeccCCCCccc
Q 002753 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSD-GSLYSISWKGEFYGAFELVHSSNDSSVA 179 (884)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~llv~~~~-g~i~~~~w~~~~~~~~~l~~~~~~~~~i 179 (884)
.... ...........++.++ ++.+.+++++..+ |.+..++..........
T Consensus 114 ~~I~----------------~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~----------- 166 (369)
T PF02239_consen 114 KTIP----------------TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT----------- 166 (369)
T ss_dssp EEEE------------------EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE-----------
T ss_pred eecc----------------cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee-----------
Confidence 1110 0000011122234444 3455666776654 67777665433211000
Q ss_pred eeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeec-CCccceeeecccccc-----
Q 002753 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE----- 253 (884)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-d~~i~~w~~~~~~~~----- 253 (884)
. ........+. .++|||++++++.. +..+-++|..+.+..
T Consensus 167 -~-----------------------i~~g~~~~D~----------~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 167 -T-----------------------IKVGRFPHDG----------GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp -E-----------------------EE--TTEEEE----------EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred -e-----------------------eccccccccc----------ccCcccceeeecccccceeEEEeeccceEEEEeec
Confidence 0 0011112222 34666666555432 222223333222111
Q ss_pred --cCCCCcEE----------EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCE
Q 002753 254 --LGSGDAVC----------ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (884)
Q Consensus 254 --~~h~~~v~----------va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~ 321 (884)
..|..... -+.+..+....+.-..+.+.+|+... .+.++++.. ..++ ..++-+||+++
T Consensus 213 g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~--------~G~g-lFi~thP~s~~ 282 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA-WKVVKTIPT--------QGGG-LFIKTHPDSRY 282 (369)
T ss_dssp SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB-TSEEEEEE---------SSSS---EE--TT-SE
T ss_pred cccccccccccccCCCcceEEeeccccceecccccCCccccchhhc-CeEEEEEEC--------CCCc-ceeecCCCCcc
Confidence 11111111 11122233322222233555677666 677888876 4455 77889999999
Q ss_pred EEEE----EcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec---c-eeEEEecCCceEEEEe
Q 002753 322 FAVG----WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG---T-SMMQWDEYGYRLYAIE 389 (884)
Q Consensus 322 Lasg----~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg---~-~i~~W~~~~~~l~~~~ 389 (884)
+.+. .+.+.|.++|..+.+...++.......+..+.|+++|. +.++|. . .+.++|..+.++....
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~---~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK---EVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS---EEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC---EEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 9998 34489999999998887777643223477889999982 222321 1 5666666666665544
No 237
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=0.00036 Score=72.93 Aligned_cols=209 Identities=18% Similarity=0.263 Sum_probs=116.1
Q ss_pred E-EEEcCCCCEEEEEecC-CeEEEEEccCCCcceEEEeeccCCCCCCCCcC----------eEEEEECCCCCEEEEEEcC
Q 002753 261 C-ASIAPEQQILAVGTRR-GVVELYDLAESASLIRTVSLYDWGYSMDDTGP----------VSCIAWTPDNSAFAVGWKS 328 (884)
Q Consensus 261 ~-va~sp~~~~la~g~~d-g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~----------V~~l~~spdg~~Lasg~~d 328 (884)
| ++++++++++.++... |.|.++-+++.+.+.......+ |+++ +.+..++|||++|++..-.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~------h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG 165 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK------HTGSGPHERQESPHVHSANFTPDGRYLVVPDLG 165 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee------cCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence 5 9999999999988765 7999999977554433322211 4444 8899999999999987641
Q ss_pred -CcEEEEeccCCeeEEEeccc--cccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeeccee
Q 002753 329 -RGLTVWSVSGCRLMSTIRQI--SLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCC 405 (884)
Q Consensus 329 -g~v~vW~~~~~~l~~tl~~~--~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~ 405 (884)
-.|.++++..+.+...-... ....-..++|+|++ .-...+. +-.+.|
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~--------------------k~aY~v~-EL~stV--------- 215 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNG--------------------KYAYLVN-ELNSTV--------- 215 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCC--------------------cEEEEEe-ccCCEE---------
Confidence 36888998876643221100 01122334444444 2111111 111222
Q ss_pred ecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCc-eE-EEEc--c
Q 002753 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG-LI-LYDI--R 481 (884)
Q Consensus 406 ~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg-~i-iwd~--~ 481 (884)
.+|.......++- .......+|..|.+.+| .-.+.+|+||++|.++.+.- .+ +|.+ .
T Consensus 216 ---------~v~~y~~~~g~~~---------~lQ~i~tlP~dF~g~~~-~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 216 ---------DVLEYNPAVGKFE---------ELQTIDTLPEDFTGTNW-AAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred ---------EEEEEcCCCceEE---------EeeeeccCccccCCCCc-eeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 2222111100000 00011125777777665 45789999999999886532 23 6655 4
Q ss_pred CCcEEEecCccceeeeEEEE--EEEeCCEEEEEEEecCCCeEEEEEeeCC
Q 002753 482 QKKWRVFGDITQEQKIQSKG--LLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (884)
Q Consensus 482 s~~w~~f~~~~~e~~~~v~~--~~W~~~~lv~~~~~~~~~~~elr~y~~~ 529 (884)
+|+...++....|. ..-++ +.-.+++|++++. .++.+.+|.++
T Consensus 277 ~g~L~~~~~~~teg-~~PR~F~i~~~g~~Liaa~q----~sd~i~vf~~d 321 (346)
T COG2706 277 GGKLELVGITPTEG-QFPRDFNINPSGRFLIAANQ----KSDNITVFERD 321 (346)
T ss_pred CCEEEEEEEeccCC-cCCccceeCCCCCEEEEEcc----CCCcEEEEEEc
Confidence 55544443322222 11233 3335788888733 33559999996
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=4.5e-06 Score=95.42 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=90.4
Q ss_pred eEEEEEcCCcEEEEeec---CCccceeeeccccc--ccCCCCcEE-EEEcCCCCEEE-EEecCCe--EEEEEccCCCcce
Q 002753 222 LLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDK--ELGSGDAVC-ASIAPEQQILA-VGTRRGV--VELYDLAESASLI 292 (884)
Q Consensus 222 ~~~~~s~dG~~~~~~~~---d~~i~~w~~~~~~~--~~~h~~~v~-va~sp~~~~la-~g~~dg~--v~lw~~~~~~~~~ 292 (884)
....++|||+.++..+. +..+.+|+...++. +..+...+. .+|||||+.|+ +.+.+|. |.+||+++ +..
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~~~ 282 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--GTT 282 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC--Cce
Confidence 33456888887665543 34566777765543 233344444 89999999876 4455665 56667665 333
Q ss_pred EEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC-C--cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccce
Q 002753 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (884)
Q Consensus 293 ~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d-g--~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l 369 (884)
+.+.. +.+.....+|||||+.|+..+.. | .|.+|++.++... .+..+ ...+..+.|+|++ ..+
T Consensus 283 ~~Lt~--------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~~~~~~~SpdG----~~i 348 (435)
T PRK05137 283 TRLTD--------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGRYSTPVWSPRG----DLI 348 (435)
T ss_pred EEccC--------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCcccCeEECCCC----CEE
Confidence 44443 55566789999999999877743 3 4778888776533 33222 2345668899998 544
Q ss_pred eec------ceeEEEecCCce
Q 002753 370 MSG------TSMMQWDEYGYR 384 (884)
Q Consensus 370 ~sg------~~i~~W~~~~~~ 384 (884)
+.. ..+.+|+..++.
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc
Confidence 321 145666665543
No 239
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.55 E-value=8.8e-07 Score=102.70 Aligned_cols=149 Identities=16% Similarity=0.187 Sum_probs=113.7
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee
Q 002753 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (884)
Q Consensus 262 va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l 341 (884)
+-++++.-++++|+.-|.|.+|+........ .+.+ |.|.+.++.||-||+++|+.++|+++|+|++.+.+.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~G--------HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~ 209 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLKG--------HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV 209 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcc-eecc--------cCCceEEEEEccCCcEEEEEecCcceeeeecccccc
Confidence 5677888899999999999999987523333 4666 999999999999999999999999999999987642
Q ss_pred EEEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEee-cceeecccCCCCceeeeee
Q 002753 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVI 420 (884)
Q Consensus 342 ~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~l~ 420 (884)
.. +.+ -+|+.++|+.-+ ...++|++.|.+.++|...
T Consensus 210 ~~----------------~~~---------------------------fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 210 LG----------------CTG---------------------------FGHSARVWACCFLPNRIITVGEDCTCRVWGVN 246 (967)
T ss_pred cC----------------ccc---------------------------ccccceeEEEEeccceeEEeccceEEEEEecc
Confidence 21 000 134555554444 3377889999999999432
Q ss_pred ecCCeEEEEecCCCCceeEEEeecccccccCCC-ceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002753 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-PVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (884)
Q Consensus 421 ~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~-~I~~va~S~dG~~lavag~dg~i-iwd~~s~ 483 (884)
.. ..++|.+|.+ -|+.++.+++...++++|.||.+ +|+....
T Consensus 247 ~~---------------------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 247 GT---------------------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cc---------------------eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 11 1336777754 48999999999999999999999 9998654
No 240
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.54 E-value=4.2e-05 Score=82.49 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=83.9
Q ss_pred CCcCeEEEEECCCCCEEEEE--EcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceee-c-----ceeEE
Q 002753 306 DTGPVSCIAWTPDNSAFAVG--WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-G-----TSMMQ 377 (884)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg--~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~s-g-----~~i~~ 377 (884)
-.++|...+|+|+++.+++. ..+-.+.++++.++ +...+.. ..-+.+.|+|.+ ..++. | +.+.+
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe---~~rNT~~fsp~~----r~il~agF~nl~gni~i 344 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE---QKRNTIFFSPHE----RYILFAGFDNLQGNIEI 344 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc-eEEecCC---cccccccccCcc----cEEEEecCCccccceEE
Confidence 58999999999999877765 46789999999998 4444433 234556778876 44433 2 27888
Q ss_pred EecCCceEEE-EecCCcceEEEEee-cceeec--c----cCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccc
Q 002753 378 WDEYGYRLYA-IEEGSSERVLIFSF-GKCCLN--R----GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (884)
Q Consensus 378 W~~~~~~l~~-~~~~~~~~v~~~~~-~~~~~s--~----~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~ 449 (884)
|++.+..... ...+...+...+++ +..+.+ . ..|+.+++|++....- +
T Consensus 345 ~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~-----------------------f- 400 (561)
T COG5354 345 FDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV-----------------------F- 400 (561)
T ss_pred eccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh-----------------------h-
Confidence 9987765544 55554555555555 332221 1 2356666666532211 1
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCc
Q 002753 450 SQNWPVQHVAASKDGMFLAVAGLHG 474 (884)
Q Consensus 450 ~~~~~I~~va~S~dG~~lavag~dg 474 (884)
....+.|.|.|++.-+.+.++
T Consensus 401 ----el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 401 ----ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ----hhhhccccCCcccceeeccCC
Confidence 345677888888887776554
No 241
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.53 E-value=1.9e-06 Score=94.43 Aligned_cols=209 Identities=16% Similarity=0.147 Sum_probs=119.1
Q ss_pred cCCccEEEEEecCcEEEEEEEEecCceeecCCC-CCCC---ceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecC
Q 002753 76 SPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGK-QPSG---LFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD 151 (884)
Q Consensus 76 sPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~-~~~~---~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~ 151 (884)
.|-..++|..+++|+|++|+...+...+.+... ...+ ...|.+...-+...... -..+.--+.+...++.|+..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~--~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLS--LEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHh--HHHHhhccCCceEEEeecCC
Confidence 355678999999999999999866544433211 1111 11232211110000000 00000112234567778999
Q ss_pred CcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCc
Q 002753 152 GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ 231 (884)
Q Consensus 152 g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~ 231 (884)
|.|..++-.+...... .....+...+.++.+......+-.+..|++
T Consensus 80 g~v~~ys~~~g~it~~----------------------------------~st~~h~~~v~~~~~~~~~~ciyS~~ad~~ 125 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAK----------------------------------LSTDKHYGNVNEILDAQRLGCIYSVGADLK 125 (541)
T ss_pred ccEEEEEecCCeEEEE----------------------------------EecCCCCCcceeeecccccCceEecCCcee
Confidence 9998876432211100 111234455666555444444344444454
Q ss_pred EEEEeecCCcc-ceeeecccccccCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCe
Q 002753 232 LMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV 310 (884)
Q Consensus 232 ~~~~~~~d~~i-~~w~~~~~~~~~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V 310 (884)
+......+..+ ++|.... ...-.+.++||++.+++|+ ++|++||+++ .+.+.++.+ |.++|
T Consensus 126 v~~~~~~~~~~~~~~~~~~-------~~~~sl~is~D~~~l~~as--~~ik~~~~~~-kevv~~ftg--------h~s~v 187 (541)
T KOG4547|consen 126 VVYILEKEKVIIRIWKEQK-------PLVSSLCISPDGKILLTAS--RQIKVLDIET-KEVVITFTG--------HGSPV 187 (541)
T ss_pred EEEEecccceeeeeeccCC-------CccceEEEcCCCCEEEecc--ceEEEEEccC-ceEEEEecC--------CCcce
Confidence 44433332221 2332221 2223488999999999886 6899999998 888999999 99999
Q ss_pred EEEEECCC-----CC-EEEEEEcCCcEEEEeccC
Q 002753 311 SCIAWTPD-----NS-AFAVGWKSRGLTVWSVSG 338 (884)
Q Consensus 311 ~~l~~spd-----g~-~Lasg~~dg~v~vW~~~~ 338 (884)
++++|..+ |. +|.+...+..+.+|-+.+
T Consensus 188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999887 55 455555667888887754
No 242
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=7.3e-05 Score=84.22 Aligned_cols=275 Identities=18% Similarity=0.171 Sum_probs=139.5
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCC--EEEEEEcCCcEEEEeccCC
Q 002753 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGC 339 (884)
Q Consensus 262 va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~--~Lasg~~dg~v~vW~~~~~ 339 (884)
.+|+|..+-+........+.|+|++- ..++.+... ..+.+.-+.|-||++ .|..+-.||.+.+|-....
T Consensus 236 faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpi--------er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 236 FAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPI--------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred hhcChhhhceEEEEeccceEEEcchh-hceeEEEEe--------ccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 58899877776667788899999986 566666666 567788999999876 7888999999999976431
Q ss_pred e----------------eEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcce-EEEEee-
Q 002753 340 R----------------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSER-VLIFSF- 401 (884)
Q Consensus 340 ~----------------l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~-v~~~~~- 401 (884)
. ....+.....-.....+..|..++....+.+.+...+|...++++-......... ..-|+|
T Consensus 307 ~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~ 386 (1062)
T KOG1912|consen 307 PTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFN 386 (1062)
T ss_pred CccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccccc
Confidence 1 1111100000000111112222111233444456777887765543322211111 133333
Q ss_pred cc-------eeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccc-----cCCCceEEEEEccCCCEEEE
Q 002753 402 GK-------CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-----SQNWPVQHVAASKDGMFLAV 469 (884)
Q Consensus 402 ~~-------~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~-----~~~~~I~~va~S~dG~~lav 469 (884)
+. .+.+-+.||... .|. .... .+ ..|+-.+ +.|.|.- .-..+|+
T Consensus 387 ~~~~~v~k~~l~~LS~dg~h~-----sGs---~~~~--------~~--p~p~~t~~~~~p~~n~~~~------~~pLvAv 442 (1062)
T KOG1912|consen 387 LSTKLVGKTSLISLSDDGSHS-----SGS---TCVR--------MR--PMPELTKVENDPGGNTPAG------TVPLVAV 442 (1062)
T ss_pred CceeehhhccccchhhcCCCC-----CCc---eeee--------cc--cCcccceeecCCCCCccce------eeeeEEe
Confidence 11 112222222100 000 0000 00 0111111 1111111 1247999
Q ss_pred EeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEE-EEEEEecCCC---e--EEEEEeeCC-CCCCcceEEEEe
Q 002753 470 AGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKII-VVCNYIDSSN---T--YELLFYPRY-HLDQSSLLCRKS 541 (884)
Q Consensus 470 ag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~l-v~~~~~~~~~---~--~elr~y~~~-~l~~~~~l~~~~ 541 (884)
|+..|++ ++|+.++.-. ....-+.-.|+|+.|.++.- +..+|+...+ . .++.+-... -+....-....+
T Consensus 443 GT~sGTV~vvdvst~~v~---~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~ 519 (1062)
T KOG1912|consen 443 GTNSGTVDVVDVSTNAVA---ASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKP 519 (1062)
T ss_pred ecCCceEEEEEecchhhh---hhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCC
Confidence 9999999 9999887532 11112333488999998764 4444432221 1 233333221 122111111111
Q ss_pred cCCc--cEEEEccCCEEEEEEcCCeEEEEEEEE
Q 002753 542 LLAK--PIVMDVYEDYILVTYRPFDVHIFHVKL 572 (884)
Q Consensus 542 ~~~~--~~~~~~~~~~llv~~~~~~i~i~~~~~ 572 (884)
-.+| .+..+..+.++.|..-+.-+-+|++..
T Consensus 520 despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 520 DESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred CcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 1122 344566788999988888888998853
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.53 E-value=0.00045 Score=76.30 Aligned_cols=271 Identities=11% Similarity=0.126 Sum_probs=133.7
Q ss_pred EEEEEecCeEEEEEcc-----CeEEEEecCCceeEEEEEeeChHhhhhccc-eeEEEEcCCccEEEEEe-cCcEEEEEEE
Q 002753 24 IIYFKVNNGLLLIASP-----CHIELWSSSQHKVRLGKYKRDSESVQREGE-NLQAVWSPDTKLIAVVT-SSLYLHIFKV 96 (884)
Q Consensus 24 vv~fspdg~lla~~t~-----~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~-~~~v~wsPDg~~Lav~t-~~g~l~l~~l 96 (884)
-++++|++++|-++.+ +.|..|.+......+....+... .|. -..++.+||+++|+++. .+|.+.+|++
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~----~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS----GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE----SSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc----CCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 3678999887766633 48888888522123333322211 233 25699999999999988 4889999999
Q ss_pred EecCceeecCCCCCCCceeeeeeeeeecccc--ccccceeEEEEeecCCeEEEEe-cCCcEEEEecCCccccceeeeccC
Q 002753 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLP--FAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSS 173 (884)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~llv~~-~~g~i~~~~w~~~~~~~~~l~~~~ 173 (884)
......... ............. -......-..+.++++.+++.. ....|..+.++..... +..
T Consensus 117 ~~~g~l~~~---------~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-l~~---- 182 (345)
T PF10282_consen 117 DDDGSLGEV---------VQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-LTP---- 182 (345)
T ss_dssp CTTSEEEEE---------EEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-EEE----
T ss_pred cCCccccee---------eeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-EEE----
Confidence 643211000 0000000000000 0000111124566777777653 3447888888755421 110
Q ss_pred CCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEc-CCcEEEEeec--CCccceeeeccc
Q 002753 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVS--KKGLKLAEFIKI 250 (884)
Q Consensus 174 ~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~--d~~i~~w~~~~~ 250 (884)
... .-......-+.|.|++....+.++.. ++.+.+.... ++..+.......
T Consensus 183 -----~~~---------------------~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 183 -----VDS---------------------IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp -----EEE---------------------EECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred -----eec---------------------cccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence 000 00122334555565443332222222 1222222222 222221111110
Q ss_pred --ccccCCCCcEEEEEcCCCCEEEEEe-cCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEc
Q 002753 251 --DKELGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (884)
Q Consensus 251 --~~~~~h~~~v~va~sp~~~~la~g~-~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (884)
....+...+-.++++|||++|.+.. .+++|.+|+++...+.+..+....- ....-+.++++|||++|+++..
T Consensus 237 ~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-----~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 237 LPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-----GGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp CETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-----SSSSEEEEEE-TTSSEEEEEET
T ss_pred ccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-----CCCCccEEEEeCCCCEEEEEec
Confidence 0011112333499999999877655 4579999999542333333222100 1222588999999999999885
Q ss_pred C-CcEEEEec--cCCeeEE
Q 002753 328 S-RGLTVWSV--SGCRLMS 343 (884)
Q Consensus 328 d-g~v~vW~~--~~~~l~~ 343 (884)
+ +.|.+|++ .+|.+..
T Consensus 312 ~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 312 DSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp TTTEEEEEEEETTTTEEEE
T ss_pred CCCeEEEEEEeCCCCcEEE
Confidence 4 78999977 4665543
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.53 E-value=6.9e-06 Score=84.11 Aligned_cols=257 Identities=10% Similarity=0.051 Sum_probs=133.1
Q ss_pred cceeEEEEcCCccEEEEEecCcEEEEEEEEecCcee-----ecCCCCCCCceeeeeeeeeeccccccccceeEEEEe-ec
Q 002753 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI-----QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-SD 141 (884)
Q Consensus 68 G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~-~~ 141 (884)
.-+.+|.|..+|.+||+|..+|.+.+|+-....+.. .++.|.++=-.+.++ ..+++ ...+.-+. .+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSl--eieEK------inkIrw~~~~n 97 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSL--EIEEK------INKIRWLDDGN 97 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhh--hhhhh------hhhceecCCCC
Confidence 345689999999999999999999999765433211 112222211111111 11111 11122222 23
Q ss_pred CCeEEEEecCCcEEEEecCCcccc--ceeee--ccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEc
Q 002753 142 NKHMLLGLSDGSLYSISWKGEFYG--AFELV--HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (884)
Q Consensus 142 ~~~llv~~~~g~i~~~~w~~~~~~--~~~l~--~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~ 217 (884)
...+++.+.+.++..|........ ...+. ..+...+.++......-.... + ...+++.-..|.-.|.+|.
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v---e-a~prRv~aNaHtyhiNSIS-- 171 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV---E-ASPRRVYANAHTYHINSIS-- 171 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee---e-eeeeeeccccceeEeeeee--
Confidence 467788888899888544221111 00000 011111111110000000000 0 0011111123333444444
Q ss_pred CCcceEEEEEcCCcEEEEeecCCccceeeecccccc------c-----CCCCcEE-EEEcCC-CCEEEEEecCCeEEEEE
Q 002753 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------L-----GSGDAVC-ASIAPE-QQILAVGTRRGVVELYD 284 (884)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~------~-----~h~~~v~-va~sp~-~~~la~g~~dg~v~lw~ 284 (884)
+.+|++.+++ ++|-.+.+|+......- . .-+..++ ..|+|. ..+++-.+..|+||+-|
T Consensus 172 --------~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 172 --------VNSDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred --------ecCccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 6788888774 67778889986532211 1 1123444 789986 46777788899999999
Q ss_pred ccCCCcce---EEEeeccCCCCC----CCCcCeEEEEECCCCCEEEEEEcCCcEEEEec-cCCeeEEEeccc
Q 002753 285 LAESASLI---RTVSLYDWGYSM----DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV-SGCRLMSTIRQI 348 (884)
Q Consensus 285 ~~~~~~~~---~~l~~~~~~~~~----~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~-~~~~l~~tl~~~ 348 (884)
++...-+. +.+....-|.+. +-...|..+.||++|+++++-.. -+|++||+ ...+.+.+..-|
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 98521111 111111111111 12346889999999999998766 89999999 455556555544
No 245
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.53 E-value=1.2e-07 Score=100.28 Aligned_cols=217 Identities=14% Similarity=0.155 Sum_probs=155.7
Q ss_pred EEEEcCCcEEEEeecCCccceeeecccccc--cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccC
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~ 300 (884)
+-.+.+|+.++.+...|.+-..|..+.+.. ......+. +.|-++.+++|++ +..-+.|||-. +..+++++.
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~--GtElHClk~--- 208 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN--GTELHCLKR--- 208 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCC--CcEEeehhh---
Confidence 345889999999888888776665554322 22234455 7888888999995 45688999854 566677765
Q ss_pred CCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeec---ceeEE
Q 002753 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG---TSMMQ 377 (884)
Q Consensus 301 ~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg---~~i~~ 377 (884)
...|..+.|-|--.+||++++.|-++--|+..|+++..+... ...+..+.-.|-. ..+-.| +++-+
T Consensus 209 ------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-~G~~~vm~qNP~N----aVih~GhsnGtVSl 277 (545)
T KOG1272|consen 209 ------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-AGRTDVMKQNPYN----AVIHLGHSNGTVSL 277 (545)
T ss_pred ------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-CCccchhhcCCcc----ceEEEcCCCceEEe
Confidence 456899999999999999999999999999999998877653 3444454444543 222222 38999
Q ss_pred EecCCceEEEEecCCcceE--EEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCc
Q 002753 378 WDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (884)
Q Consensus 378 W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~ 454 (884)
|++...+.++.+-.|.+.| +++.. |++++|.+.|..+++||+..-.. +.++.. .-+
T Consensus 278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--------------------l~t~~t-p~~ 336 (545)
T KOG1272|consen 278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--------------------LHTYRT-PHP 336 (545)
T ss_pred cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc--------------------cceeec-CCC
Confidence 9999988888777888888 55555 99999999999999999876553 333332 346
Q ss_pred eEEEEEccCCCEEEEEeCCceEEEE
Q 002753 455 VQHVAASKDGMFLAVAGLHGLILYD 479 (884)
Q Consensus 455 I~~va~S~dG~~lavag~dg~iiwd 479 (884)
...+++|..|. ||.|-.+-.-+|.
T Consensus 337 a~~ls~Sqkgl-LA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 337 ASNLSLSQKGL-LALSYGDHVQIWK 360 (545)
T ss_pred ccccccccccc-eeeecCCeeeeeh
Confidence 77899997774 4444433332674
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.52 E-value=1.7e-05 Score=90.34 Aligned_cols=77 Identities=25% Similarity=0.246 Sum_probs=53.7
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecC---CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEE-EEcC
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKS 328 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~d---g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Las-g~~d 328 (884)
..+...+. .+|||||+.||.++.+ ..|++||+.+ ++. ..+.. +.+.+.+++|+|||+.|+. .+.+
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~-~~~~~--------~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-GQR-EKVAS--------FPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-CCE-EEeec--------CCCCccceEECCCCCEEEEEECCC
Confidence 33444444 8999999999987754 4799999976 433 22333 4566778999999997764 4444
Q ss_pred C--cEEEEeccCCe
Q 002753 329 R--GLTVWSVSGCR 340 (884)
Q Consensus 329 g--~v~vW~~~~~~ 340 (884)
+ .|.+|++.++.
T Consensus 256 ~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 256 GNPDIYVMDLDGKQ 269 (417)
T ss_pred CCccEEEEECCCCC
Confidence 4 48888887764
No 247
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=1e-05 Score=92.41 Aligned_cols=208 Identities=13% Similarity=0.082 Sum_probs=118.0
Q ss_pred CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC---CcEEEEeccCCeeEEEecccccccee
Q 002753 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMSTIRQISLSSIS 354 (884)
Q Consensus 278 g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d---g~v~vW~~~~~~l~~tl~~~~~~~v~ 354 (884)
.+|.+||.+. ...+.+.. +.+.+.+.+|||||+.|+..+.+ ..+.+|++.++... .+... .....
T Consensus 184 ~~l~i~D~~g--~~~~~lt~--------~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~-~g~~~ 251 (433)
T PRK04922 184 YALQVADSDG--YNPQTILR--------SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASF-RGING 251 (433)
T ss_pred EEEEEECCCC--CCceEeec--------CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccC-CCCcc
Confidence 4688888753 44455554 66789999999999999987744 35999999877543 22222 22345
Q ss_pred eeeecCCCCCCcccee-ec-----ceeEEEecCCceEEEEecCCcceE--EEEee-cceeeccc-CCCCceeeeeeecCC
Q 002753 355 SPIVKPNQDCKYEPLM-SG-----TSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRG-VSGMTYARQVIYGED 424 (884)
Q Consensus 355 s~~~s~~~~~~~~~l~-sg-----~~i~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~-~d~~~~~w~l~~~~~ 424 (884)
+++|+|++ ..++ +. ..+.+|+..++++.... .+.... ..+++ ++.++..+ .++...+|.+.....
T Consensus 252 ~~~~SpDG----~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 252 APSFSPDG----RRLALTLSRDGNPEIYVMDLGSRQLTRLT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred CceECCCC----CEEEEEEeCCCCceEEEEECCCCCeEECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 78899998 5443 21 15788888887765433 222222 34555 56555433 333333333221111
Q ss_pred eEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCc---eE-EEEccCCcEEEecCccceeeeEEE
Q 002753 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG---LI-LYDIRQKKWRVFGDITQEQKIQSK 500 (884)
Q Consensus 425 ~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg---~i-iwd~~s~~w~~f~~~~~e~~~~v~ 500 (884)
. ......+.......+|||||+++|..+.++ .+ +||+.+++.+.+.... ...
T Consensus 327 ~-------------------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~-----~~~ 382 (433)
T PRK04922 327 S-------------------AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS-----LDE 382 (433)
T ss_pred C-------------------eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC-----CCC
Confidence 0 000111112234689999999999876543 46 9999998877553221 112
Q ss_pred EEEEeCC--EEEEEEEecCCCeEEEEEeeC
Q 002753 501 GLLWLGK--IIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 501 ~~~W~~~--~lv~~~~~~~~~~~elr~y~~ 528 (884)
...|..| .++.. ....+...|.+++.
T Consensus 383 ~p~~spdG~~i~~~--s~~~g~~~L~~~~~ 410 (433)
T PRK04922 383 SPSFAPNGSMVLYA--TREGGRGVLAAVST 410 (433)
T ss_pred CceECCCCCEEEEE--EecCCceEEEEEEC
Confidence 3567643 44443 22233345555544
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.50 E-value=1.5e-05 Score=81.68 Aligned_cols=287 Identities=14% Similarity=0.149 Sum_probs=153.8
Q ss_pred eEEEEEecCeEEEEEc-cCeEEEEecCCcee----EEEEE---e---eChHhhhhccceeEEEEcCCcc--EEEEEecCc
Q 002753 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKV----RLGKY---K---RDSESVQREGENLQAVWSPDTK--LIAVVTSSL 89 (884)
Q Consensus 23 ~vv~fspdg~lla~~t-~~~v~IW~~~~~~~----~l~~~---~---r~~~sl~~~G~~~~v~wsPDg~--~Lav~t~~g 89 (884)
..|.|..+|.+||++. +++|.++.-.+..- -.+.+ . --.+|++-...+..+.|-+++. .+.+.|.|.
T Consensus 29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdk 108 (433)
T KOG1354|consen 29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDK 108 (433)
T ss_pred eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCc
Confidence 4578999999999995 57888886542211 01111 0 0123444445567889998775 577788999
Q ss_pred EEEEEEEEecCcee---ecCCCC----CCCceeeee---eee--e-eccccccccceeEEEEeecC-CeEEEEecCCcEE
Q 002753 90 YLHIFKVQITEKSI---QIGGKQ----PSGLFFIKI---SLV--L-NEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLY 155 (884)
Q Consensus 90 ~l~l~~l~~~~~~~---~~~~~~----~~~~~l~~~---~~~--~-~~~~~~~~~~~~v~~i~~~~-~~llv~~~~g~i~ 155 (884)
++++|.+....... ..+... ...+.++.+ ++. . ..++.-..+.-.+-+++.+. .+.+++.++-.|.
T Consensus 109 tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRIN 188 (433)
T KOG1354|consen 109 TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRIN 188 (433)
T ss_pred ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeee
Confidence 99999995433211 111111 111111111 000 0 11122244555566666654 4566667777777
Q ss_pred EEecCCccc-cceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcc-eEEEEEcCCcEE
Q 002753 156 SISWKGEFY-GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVLYSNGQLM 233 (884)
Q Consensus 156 ~~~w~~~~~-~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~~~~s~dG~~~ 233 (884)
+ |+.+.. +.+.| +..-+.+ ...-..-|++.+|+|..+ .++.-++.|.+-
T Consensus 189 L--Wnlei~d~sFnI------------VDIKP~n---------------mEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 189 L--WNLEIIDQSFNI------------VDIKPAN---------------MEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred e--ccccccCCceeE------------EEccccC---------------HHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 6 544331 22221 1100000 000012256667877663 444445555554
Q ss_pred EEeec-----CCccceeeec-ccccc---cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCC--
Q 002753 234 SCSVS-----KKGLKLAEFI-KIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG-- 301 (884)
Q Consensus 234 ~~~~~-----d~~i~~w~~~-~~~~~---~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~-- 301 (884)
++-.. |..-++.... .+... .+.-..+. +.|+++|+++.+-. =-+|++||+....+++.+.+.+..-
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHH
Confidence 43322 1111211110 11110 11223455 89999999998732 2699999997656777766653211
Q ss_pred -----CCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 002753 302 -----YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (884)
Q Consensus 302 -----~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~ 339 (884)
|....--.-..|+||-++..+++|+..+.+++++...|
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 11011112356899999999999999999999996544
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=0.00015 Score=80.90 Aligned_cols=220 Identities=12% Similarity=0.095 Sum_probs=131.3
Q ss_pred hhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCC
Q 002753 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK 143 (884)
Q Consensus 64 l~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 143 (884)
+-.++.-.+++|...+-++|++.+||-+++-.+.+........+-.. .. ..+....+.++.++|..+..+..
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa----~s----nLsmNQtLeGH~~sV~vvTWNe~ 82 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAA----AS----NLSMNQTLEGHNASVMVVTWNEN 82 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccc----cc----ccchhhhhccCcceEEEEEeccc
Confidence 33456667899999999999999999999999976553222111000 01 12222345677777777666543
Q ss_pred e--EEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcc
Q 002753 144 H--MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (884)
Q Consensus 144 ~--llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (884)
. +-.+-.+|.|.+|.. -.+. |..+ ......++.|.+|.|+..+.
T Consensus 83 ~QKLTtSDt~GlIiVWml--ykgs--------------------------W~EE------MiNnRnKSvV~SmsWn~dG~ 128 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWML--YKGS--------------------------WCEE------MINNRNKSVVVSMSWNLDGT 128 (1189)
T ss_pred cccccccCCCceEEEEee--eccc--------------------------HHHH------HhhCcCccEEEEEEEcCCCc
Confidence 2 222333555544321 1100 0000 11124577899999999999
Q ss_pred eEEEEEcCCcEEEEeecCCccceeeecccccccCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCC------cceEEE
Q 002753 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA------SLIRTV 295 (884)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~------~~~~~l 295 (884)
.++++..||.+++- +-|| .++|.-. +.+ .....+.||+|.+.+..+-.+|.+.+||....- .+.-..
T Consensus 129 kIcIvYeDGavIVG-svdG-NRIwgKe----Lkg-~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~ 201 (1189)
T KOG2041|consen 129 KICIVYEDGAVIVG-SVDG-NRIWGKE----LKG-QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNG 201 (1189)
T ss_pred EEEEEEccCCEEEE-eecc-ceecchh----cch-heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEee
Confidence 99999999998764 4443 2456422 122 122248899999999999999999999976411 111111
Q ss_pred eeccCCCCCCCCcCeEEEEEC--------CCCCEEEEEEcCCcEEEEec
Q 002753 296 SLYDWGYSMDDTGPVSCIAWT--------PDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 296 ~~~~~~~~~~h~~~V~~l~~s--------pdg~~Lasg~~dg~v~vW~~ 336 (884)
.+. ..+....+..+.|. ||--.||++.++|.+.+-.-
T Consensus 202 tg~----~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 202 TGI----FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred eee----ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 110 00112235556664 47779999999888776543
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=1.7e-05 Score=87.22 Aligned_cols=123 Identities=17% Similarity=0.161 Sum_probs=108.6
Q ss_pred CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 002753 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (884)
Q Consensus 267 ~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~ 346 (884)
+-..+|-|...|.|.+|++.. ++....+... .|.+.|.++.|+.+-.+|-+++.|+.+..|+...++.++...
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~-g~it~~~st~------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~ 141 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAG-GEITAKLSTD------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK 141 (541)
T ss_pred CceEEEeecCCccEEEEEecC-CeEEEEEecC------CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec
Confidence 445788999999999999988 7777777642 399999999999999999999999999999999999998887
Q ss_pred cccccceeeeeecCCCCCCccceeecc-eeEEEecCCceEEEEecCCcceEEEEee
Q 002753 347 QISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (884)
Q Consensus 347 ~~~~~~v~s~~~s~~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~~~~~~v~~~~~ 401 (884)
.. ...+.++.++||+ ..+++++ ++++|+.++.+++..+.||.+.|..++|
T Consensus 142 ~~-~~~~~sl~is~D~----~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 142 EQ-KPLVSSLCISPDG----KILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred cC-CCccceEEEcCCC----CEEEeccceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 75 6789999999998 7777776 9999999999999999999999977777
No 251
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=3.2e-06 Score=90.24 Aligned_cols=287 Identities=11% Similarity=0.104 Sum_probs=161.6
Q ss_pred CCCceEEEEEecCeEEEEEcc-CeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcC--CccEEEEEecCcEEEEEE
Q 002753 19 PSSQQIIYFKVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP--DTKLIAVVTSSLYLHIFK 95 (884)
Q Consensus 19 ~~~~~vv~fspdg~lla~~t~-~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsP--Dg~~Lav~t~~g~l~l~~ 95 (884)
++-..-|.|+..|..|+++++ ..|.+|+.. ...+...+. + .+.-.+...+|-| +.+.++..+.||.+++=.
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~-~~~~~l~f~----S-GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWV-SGSPKLSFE----S-GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhh-ccCcccccc----c-ccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 344555789999999999965 589999994 332222111 0 0111223455666 446899999999998877
Q ss_pred EEecCceeecCCCCCCCceeeeeeeeeeccccccccceeE--EEEeec-CCeEEEEecCCcEEEEecCCccccceeeecc
Q 002753 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (884)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v--~~i~~~-~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~ 172 (884)
+....... ....+..+.++| .++.++ ...++.+..++.+..++.........-
T Consensus 216 i~~t~~~e--------------------~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~---- 271 (559)
T KOG1334|consen 216 ILETGYVE--------------------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF---- 271 (559)
T ss_pred ecccccee--------------------cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee----
Confidence 64322100 000011112222 122333 356777778887776554322211100
Q ss_pred CCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCc-EEEEeecCCccceeeecccc
Q 002753 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKID 251 (884)
Q Consensus 173 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~i~~w~~~~~~ 251 (884)
+..... ......+.+|+.+| -.. .++++..+.-.++++.....
T Consensus 272 -------------------~cr~~~-------~~~~v~L~~Ia~~P----------~nt~~faVgG~dqf~RvYD~R~~~ 315 (559)
T KOG1334|consen 272 -------------------VCREAD-------EKERVGLYTIAVDP----------RNTNEFAVGGSDQFARVYDQRRID 315 (559)
T ss_pred -------------------eeeccC-------CccceeeeeEecCC----------CCccccccCChhhhhhhhcccchh
Confidence 000000 00011233334333 222 34444444444444443221
Q ss_pred cc----------------cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCC-C----------cceE-EEeeccCCCC
Q 002753 252 KE----------------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-A----------SLIR-TVSLYDWGYS 303 (884)
Q Consensus 252 ~~----------------~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~-~----------~~~~-~l~~~~~~~~ 303 (884)
+. ..+...+|+++++++.-+.+...|-.|.+++-... + ..++ ..++
T Consensus 316 ~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKG------ 389 (559)
T KOG1334|consen 316 KEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKG------ 389 (559)
T ss_pred hccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcc------
Confidence 11 12344667999987665555578888999854321 1 0111 1333
Q ss_pred CCCC--cCeEEEEE-CCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEE
Q 002753 304 MDDT--GPVSCIAW-TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ 377 (884)
Q Consensus 304 ~~h~--~~V~~l~~-spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~ 377 (884)
|. ..|+.+-| -|...++++|++-|.|.+|+-.+++++.-+++. ..-|+++.-+|-. ..|++.+ .+++
T Consensus 390 --HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-r~VVNCLEpHP~~----PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 390 --HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-RHVVNCLEPHPHL----PVLASSGIDHDVKI 462 (559)
T ss_pred --cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-cceEeccCCCCCC----chhhccCCccceee
Confidence 53 34778876 588899999999999999999999988888775 3478888888875 5555544 8999
Q ss_pred EecCCce
Q 002753 378 WDEYGYR 384 (884)
Q Consensus 378 W~~~~~~ 384 (884)
|.+.+.+
T Consensus 463 WTP~~~e 469 (559)
T KOG1334|consen 463 WTPLTAE 469 (559)
T ss_pred ecCCccc
Confidence 9986544
No 252
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=2.2e-06 Score=91.48 Aligned_cols=154 Identities=14% Similarity=0.206 Sum_probs=107.1
Q ss_pred EEEcCCCC-EEEEEecCCeEEEEEccCCCcc-----eEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 002753 262 ASIAPEQQ-ILAVGTRRGVVELYDLAESASL-----IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (884)
Q Consensus 262 va~sp~~~-~la~g~~dg~v~lw~~~~~~~~-----~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~ 335 (884)
++.+|... .+|+|+.|.-+|+||.....+. +..+-...+- . ...-.|++++|+.+|.-|.+++.|-.|.+++
T Consensus 287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~-~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV-E-DDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccc-c-cCcccceeEEecCCccceeeeecccceEEec
Confidence 88889765 8999999999999998652111 1111110000 0 1234589999999999888889999999995
Q ss_pred ccC--C----------eeEEE-ecccccc-ceeeee-ecCCCCCCccceeecc---eeEEEecCCceEEEEecCCcceEE
Q 002753 336 VSG--C----------RLMST-IRQISLS-SISSPI-VKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL 397 (884)
Q Consensus 336 ~~~--~----------~l~~t-l~~~~~~-~v~s~~-~s~~~~~~~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~ 397 (884)
..- | ..... .++|..+ .|..+- |-|.. ++++||+ .+.+|+-.++++++.+.+...-|-
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs----EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVN 440 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS----EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVN 440 (559)
T ss_pred cccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc----ceEEecCccceEEEEecchhHHHHHhhcccceEe
Confidence 421 1 11222 5566222 344444 34555 8899998 899999999999998888666567
Q ss_pred EEee---cceeecccCCCCceeeeeee
Q 002753 398 IFSF---GKCCLNRGVSGMTYARQVIY 421 (884)
Q Consensus 398 ~~~~---~~~~~s~~~d~~~~~w~l~~ 421 (884)
++.+ .-.+++.+.|..+++|.-..
T Consensus 441 CLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred ccCCCCCCchhhccCCccceeeecCCc
Confidence 7776 56788999999999998533
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.38 E-value=6.2e-06 Score=95.92 Aligned_cols=134 Identities=13% Similarity=0.126 Sum_probs=97.8
Q ss_pred EEEEeecCCccceeeecc---cccccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceE-EEeeccCCCCCCC
Q 002753 232 LMSCSVSKKGLKLAEFIK---IDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGYSMDD 306 (884)
Q Consensus 232 ~~~~~~~d~~i~~w~~~~---~~~~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~-~l~~~~~~~~~~h 306 (884)
++++++--+.+-+|.... +..+.||+..+. +.++-||+++|+.+.|.++|+|++++ .+... +.- +|
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s-~~~~~~~~f--------gH 217 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS-REVLGCTGF--------GH 217 (967)
T ss_pred EEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccc-ccccCcccc--------cc
Confidence 344444444555565441 113478999887 99999999999999999999999998 44433 333 39
Q ss_pred CcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecC
Q 002753 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (884)
Q Consensus 307 ~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~ 381 (884)
++.|..+.|.|. .++++++|.+.++|+..+..+. .+.+|-...+..++..++. ....+++ .+++|+..
T Consensus 218 saRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~----~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 218 SARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGV----IIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred cceeEEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCc----eEEEeeccCcchhhhhhh
Confidence 999999999999 9999999999999988776544 7777755667777776664 3344443 66666653
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=0.0027 Score=66.59 Aligned_cols=251 Identities=12% Similarity=0.138 Sum_probs=134.2
Q ss_pred EEEEEc---cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecC---cEEEEEEEEecCceeecC
Q 002753 33 LLLIAS---PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIG 106 (884)
Q Consensus 33 lla~~t---~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~---g~l~l~~l~~~~~~~~~~ 106 (884)
++++-| ...|.+|+++++...+... +-+.+-+..+-++|+|+++.|+++-.+ |.+.-|++......+.+.
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l 81 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL 81 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe
Confidence 455555 5689999997333322222 223345666789999999999998754 778889887543333331
Q ss_pred CCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEec-CCcEEEEecCCccccceeeeccCCCCccceeeccc
Q 002753 107 GKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (884)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~-~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~ 185 (884)
+.. ...+....-.++..++..++++.. .|.|.++....+ +.... .+..+.+.
T Consensus 82 n~~-----------------~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d--G~l~~--------~v~~~~h~ 134 (346)
T COG2706 82 NRQ-----------------TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD--GSLQP--------VVQVVKHT 134 (346)
T ss_pred ecc-----------------ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccC--Ccccc--------ceeeeecC
Confidence 111 111111122355566677777654 456766554322 11100 00000000
Q ss_pred CCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeec-CCccceeeecccccc-------cCCC
Q 002753 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE-------LGSG 257 (884)
Q Consensus 186 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-d~~i~~w~~~~~~~~-------~~h~ 257 (884)
... -.-......+ ..+-++|||+++++..- ...+.+++...+... ..-.
T Consensus 135 g~~-------------p~~rQ~~~h~----------H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~ 191 (346)
T COG2706 135 GSG-------------PHERQESPHV----------HSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA 191 (346)
T ss_pred CCC-------------CCccccCCcc----------ceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence 000 0000001111 23456888887765432 223445554433211 1112
Q ss_pred CcEEEEEcCCCCEEEE-EecCCeEEEEEccCCCcceEEEeec-cCCCCCCCCcCeEEEEECCCCCEEEEEEcC-CcEEEE
Q 002753 258 DAVCASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVSLY-DWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVW 334 (884)
Q Consensus 258 ~~v~va~sp~~~~la~-g~~dg~v~lw~~~~~~~~~~~l~~~-~~~~~~~h~~~V~~l~~spdg~~Lasg~~d-g~v~vW 334 (884)
.+-.++|+|++++.-+ .--+++|.+|..+........++.. ..|....-.....+|..+|||++|-++.+- ..|.++
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 3444999999997754 4568999999998733333333321 122221234456789999999999988653 467777
Q ss_pred ecc
Q 002753 335 SVS 337 (884)
Q Consensus 335 ~~~ 337 (884)
.+.
T Consensus 272 ~V~ 274 (346)
T COG2706 272 SVD 274 (346)
T ss_pred EEc
Confidence 764
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.35 E-value=0.0041 Score=68.73 Aligned_cols=269 Identities=12% Similarity=0.084 Sum_probs=133.4
Q ss_pred CeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEec----CcEEEEEEEEecCceeecCCCCCCCcee
Q 002753 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----SLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (884)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~----~g~l~l~~l~~~~~~~~~~~~~~~~~~l 115 (884)
+.|.+|.++.....+...... ..-+.-..++++|++++|++... +|.|..|++......+.. +
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~----~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~---------~ 79 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTV----AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL---------L 79 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE----EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE---------E
T ss_pred CcEEEEEEcCCCCCceEeeee----cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE---------e
Confidence 578888883222223222211 11122356999999999999987 468999998754222211 0
Q ss_pred eeeeeeeeccccccccceeEEEEeecCCeEEEEec-CCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceec
Q 002753 116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (884)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~-~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~ 194 (884)
. .....+....-.++.+++..++++.. +|.+..+..+..-....... .+...+...+
T Consensus 80 ~--------~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~-------~~~~~g~g~~------- 137 (345)
T PF10282_consen 80 N--------SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ-------TVRHEGSGPN------- 137 (345)
T ss_dssp E--------EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE-------EEESEEEESS-------
T ss_pred e--------eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee-------ecccCCCCCc-------
Confidence 0 11111222222355667888888764 77888877764311100000 0000000000
Q ss_pred CCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEee-cCCccceeeecccc---------cccCCCCcEEEEE
Q 002753 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKID---------KELGSGDAVCASI 264 (884)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~d~~i~~w~~~~~~---------~~~~h~~~v~va~ 264 (884)
..........+ +.++|||+.+++.. ....+.+++..... ....-..+-.++|
T Consensus 138 --------~~rq~~~h~H~----------v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 138 --------PDRQEGPHPHQ----------VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp --------TTTTSSTCEEE----------EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred --------cccccccccee----------EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 00011223333 44577877665432 22234444443221 0112233445999
Q ss_pred cCCCCEEE-EEecCCeEEEEEccCCCcceEEEee-ccCCCCCCCCcCeEEEEECCCCCEEEEEEc-CCcEEEEecc--CC
Q 002753 265 APEQQILA-VGTRRGVVELYDLAESASLIRTVSL-YDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS--GC 339 (884)
Q Consensus 265 sp~~~~la-~g~~dg~v~lw~~~~~~~~~~~l~~-~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-dg~v~vW~~~--~~ 339 (884)
+|+++++. +...+++|.+|++......+..... ...+...........+++||||++|.++.+ +++|.++++. ++
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG 279 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC
Confidence 99998775 4556789999999831222222221 111111112235788999999999888765 4789999993 33
Q ss_pred ee--EEEeccccccceeeeeecCCC
Q 002753 340 RL--MSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 340 ~l--~~tl~~~~~~~v~s~~~s~~~ 362 (884)
.+ +...... ...-..++++|++
T Consensus 280 ~l~~~~~~~~~-G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 280 TLTLVQTVPTG-GKFPRHFAFSPDG 303 (345)
T ss_dssp TEEEEEEEEES-SSSEEEEEE-TTS
T ss_pred ceEEEEEEeCC-CCCccEEEEeCCC
Confidence 32 2222211 1224566777776
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=6.8e-05 Score=85.09 Aligned_cols=125 Identities=10% Similarity=0.056 Sum_probs=74.0
Q ss_pred EEEcCCcEEEEeec-CCccceeeecc------cccccCCCCcE-EEEEcCCCCEEEEEecC---CeEEEEEccCCCcceE
Q 002753 225 VLYSNGQLMSCSVS-KKGLKLAEFIK------IDKELGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIR 293 (884)
Q Consensus 225 ~~s~dG~~~~~~~~-d~~i~~w~~~~------~~~~~~h~~~v-~va~sp~~~~la~g~~d---g~v~lw~~~~~~~~~~ 293 (884)
.++|||+.++..++ ++..++|.... .+.+..+.... ..+|||||+.||..+.+ ..|.+||+.+ ++. +
T Consensus 287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~ 364 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-Y 364 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-E
Confidence 45788886665543 44455553221 11122233333 38999999999876553 3689999876 433 3
Q ss_pred EEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC---CcEEEEeccCCeeEEEeccccccceeeeeecCC
Q 002753 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (884)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d---g~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~ 361 (884)
.+.. ..+.+....|+|||+.|+....+ ..+.+|++.++....-... ...+..++|+|.
T Consensus 365 ~Lt~--------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~--~g~~~~p~Ws~~ 425 (428)
T PRK01029 365 QLTT--------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG--SGEKRFPSWGAF 425 (428)
T ss_pred EccC--------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCcccCceecCC
Confidence 3332 23356779999999988754432 4588888887754332222 233455666654
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=8.7e-05 Score=84.86 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=56.5
Q ss_pred CCcEE-EEEcCCCCEEEEEecC-C--eEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEE-EEcCCc-
Q 002753 257 GDAVC-ASIAPEQQILAVGTRR-G--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKSRG- 330 (884)
Q Consensus 257 ~~~v~-va~sp~~~~la~g~~d-g--~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Las-g~~dg~- 330 (884)
...+. .+|||||+.||..+.+ + .|.+||+.+ ++. ..+.. ..+.....+|||||+.|+. .+.+|.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-g~~-~~lt~--------~~g~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-QVR-EKVTS--------FPGINGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCC-CCe-EEecC--------CCCCcCCeeECCCCCEEEEEEeCCCCe
Confidence 33444 8999999999876543 3 577888766 432 22222 2233456899999998875 455565
Q ss_pred -EEEEeccCCeeEEEeccccccceeeeeecCCC
Q 002753 331 -LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 331 -v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
|.++++.++.. ..+..+ ......+.|+|++
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~-~~~~~~p~wSpDG 317 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRH-RAIDTEPSWHPDG 317 (448)
T ss_pred EEEEEECCCCCe-EECccC-CCCccceEECCCC
Confidence 66778777653 233322 2223444555554
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=6.1e-05 Score=85.47 Aligned_cols=106 Identities=13% Similarity=0.126 Sum_probs=55.8
Q ss_pred EEEEcCCcE---EEEeecCCcccee--eeccccc--ccCCCCc-EEEEEcCCCCEEEEEec-CC----eEEEEEccCC-C
Q 002753 224 FVLYSNGQL---MSCSVSKKGLKLA--EFIKIDK--ELGSGDA-VCASIAPEQQILAVGTR-RG----VVELYDLAES-A 289 (884)
Q Consensus 224 ~~~s~dG~~---~~~~~~d~~i~~w--~~~~~~~--~~~h~~~-v~va~sp~~~~la~g~~-dg----~v~lw~~~~~-~ 289 (884)
-.++|||+. ++++..++...+| +...++. +...... ...+|||||+.||..+. +| .+.+|++... .
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 346788863 2244444444444 3332221 1111222 23789999999987553 23 3444666541 1
Q ss_pred cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEE-cCCcEEEEec
Q 002753 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSV 336 (884)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~-~dg~v~vW~~ 336 (884)
...+.+... +.+.....+|||||+.|+..+ .+|...+|.+
T Consensus 270 g~~~~lt~~-------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 270 GKPRRLLNE-------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CcceEeecC-------CCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 122222220 223345689999999888765 4566666644
No 259
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=1.7e-05 Score=82.77 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=105.0
Q ss_pred EEEEeecC--Cccceeeecccccc----------cCCCCcE--E-EEEcCC--CCEEEEEecCCeEEEEEccCCCcceEE
Q 002753 232 LMSCSVSK--KGLKLAEFIKIDKE----------LGSGDAV--C-ASIAPE--QQILAVGTRRGVVELYDLAESASLIRT 294 (884)
Q Consensus 232 ~~~~~~~d--~~i~~w~~~~~~~~----------~~h~~~v--~-va~sp~--~~~la~g~~dg~v~lw~~~~~~~~~~~ 294 (884)
++++|+.. ..+++|+....++. .+-.-+| . +.|-+. ...+|+++.-+.+|+||.....+++..
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 34445544 45667776654322 1222223 2 567666 788999999999999999874566666
Q ss_pred EeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEE-eccccccceeeeeecCCCCCCccceeecc
Q 002753 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (884)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~t-l~~~~~~~v~s~~~s~~~~~~~~~l~sg~ 373 (884)
+.. -..+++++...|+|+++.+|..-|.+..+|..++++... +.+. .++++++..+|.. ..+++++
T Consensus 243 fd~--------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih~hp~~----~~las~G 309 (412)
T KOG3881|consen 243 FDF--------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIHCHPTH----PVLASCG 309 (412)
T ss_pred ecc--------ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEEEcCCC----ceEEeec
Confidence 665 567899999999999999999999999999999887655 6665 6788999988887 7777776
Q ss_pred ---eeEEEecCCceEE
Q 002753 374 ---SMMQWDEYGYRLY 386 (884)
Q Consensus 374 ---~i~~W~~~~~~l~ 386 (884)
.+++.|..+.+++
T Consensus 310 LDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRKLL 325 (412)
T ss_pred cceeEEEeecccchhh
Confidence 6777887775544
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=9.9e-05 Score=84.41 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=71.1
Q ss_pred CCCcEE-EEEcCCCCEEEEEecC---CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEE-EEcCC-
Q 002753 256 SGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKSR- 329 (884)
Q Consensus 256 h~~~v~-va~sp~~~~la~g~~d---g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Las-g~~dg- 329 (884)
+...+. .+|||||+.||..+.+ ..|.+|++++ ++. +.+.. ..+.+...+|||||+.|+. ...+|
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~--------~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITN--------FEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccC--------CCCCcCCeEECCCCCEEEEEEccCCC
Confidence 344444 8999999999876644 3688889876 432 22322 2344567899999998874 44455
Q ss_pred -cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc------eeEEEecCCceE
Q 002753 330 -GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRL 385 (884)
Q Consensus 330 -~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~------~i~~W~~~~~~l 385 (884)
.|.+||+.++... .+..+ .....++.|+|++ ..++-.+ .+..++..+++.
T Consensus 267 ~~Iy~~d~~~~~~~-~lt~~-~~~~~~~~~spDg----~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 267 PEIYVMDLASRQLS-RVTNH-PAIDTEPFWGKDG----RTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred ceEEEEECCCCCeE-EcccC-CCCcCCeEECCCC----CEEEEEECCCCCceEEEEECCCCCE
Confidence 4777898877543 34333 3345667888887 4333111 455556555543
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=0.00011 Score=79.88 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=54.8
Q ss_pred CceEEEEEecCeEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEec-----------Cc
Q 002753 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS-----------SL 89 (884)
Q Consensus 21 ~~~vv~fspdg~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~-----------~g 89 (884)
.+-.+.+||.|.||++.....|.+|-.. .- .|..+ + -|-.+..+.|||.-++|++=+. ..
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~-~f------~r~~R-F-~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGE-SF------DRIQR-F-YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCc-cH------HHHHh-c-cCCCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 4678999999999999999999999763 21 22111 1 1334567899999999998552 24
Q ss_pred EEEEEEEEecCceeec
Q 002753 90 YLHIFKVQITEKSIQI 105 (884)
Q Consensus 90 ~l~l~~l~~~~~~~~~ 105 (884)
.++|||+.++...-.+
T Consensus 283 ~l~IWDI~tG~lkrsF 298 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSF 298 (698)
T ss_pred eEEEEEccccchhcce
Confidence 7899999877654333
No 262
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.24 E-value=2.4e-06 Score=60.98 Aligned_cols=38 Identities=29% Similarity=0.619 Sum_probs=34.7
Q ss_pred cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 002753 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (884)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~ 335 (884)
++++++++ |.++|++|+|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~--------h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG--------HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEES--------SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcC--------CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35667777 999999999999999999999999999997
No 263
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.21 E-value=0.00053 Score=69.62 Aligned_cols=232 Identities=15% Similarity=0.188 Sum_probs=118.1
Q ss_pred EEEEcCCcEEEEeecCCccceeeecc------cccc---cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEE
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIK------IDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~------~~~~---~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~ 294 (884)
++.++||+++|+-. |..+.+-...+ +++. ..+...-.++||||+.+||.+...|+|++||+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEE
Confidence 45678899888643 33443322211 1111 1122334499999999999999999999999864 44444
Q ss_pred EeeccCCCCCCCCcCeEEEEECCCC-------CEEEEEEcCCcEEEEeccC-----CeeEEEeccccccceeeeeecCCC
Q 002753 295 VSLYDWGYSMDDTGPVSCIAWTPDN-------SAFAVGWKSRGLTVWSVSG-----CRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg-------~~Lasg~~dg~v~vW~~~~-----~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
+..... ....-..+|..+.|.+-- .+|+..+ +|.++=+-+.. .+...++ .|++
T Consensus 80 I~p~~~-~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y-~G~L~Sy~vs~gt~q~y~e~hsf-----------sf~~-- 144 (282)
T PF15492_consen 80 IPPAMS-FPGDLSDAIAGLIFLEYKKSAQWSYELLVINY-RGQLRSYLVSVGTNQGYQENHSF-----------SFSS-- 144 (282)
T ss_pred cCcccc-cCCccccceeeeEeeccccccccceeEEEEec-cceeeeEEEEcccCCcceeeEEE-----------Eecc--
Confidence 443210 011124567777775421 2444443 46666665422 1111111 1111
Q ss_pred CCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCc----ee
Q 002753 363 DCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE----LK 438 (884)
Q Consensus 363 ~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~----~~ 438 (884)
...-|+...+|+++.. ++.+. |+... +.-.+...+..+..|.++.+......+...+... ..
T Consensus 145 -----~yp~Gi~~~vy~p~h~-LLlVg-G~~~~-------~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~ 210 (282)
T PF15492_consen 145 -----HYPHGINSAVYHPKHR-LLLVG-GCEQN-------QDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKR 210 (282)
T ss_pred -----cCCCceeEEEEcCCCC-EEEEe-ccCCC-------CCccccccccCceEEEEcCCCCcEEEccccCccccccccc
Confidence 1112345555555432 22221 11110 0001112223345566666655433333222111 01
Q ss_pred EEEeeccc-----ccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC----CcEEE
Q 002753 439 ILHLNLPV-----SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ----KKWRV 487 (884)
Q Consensus 439 w~~~~~p~-----~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s----~~w~~ 487 (884)
+...+++. ........|..+++||||+.||+..-+|.+ +|++-+ ++|+.
T Consensus 211 ~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 211 RGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred cceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 11111221 111234568999999999999999999999 999865 45654
No 264
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.19 E-value=0.0002 Score=71.34 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=58.1
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCC--EEEEEEcCCcEEEE
Q 002753 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVW 334 (884)
Q Consensus 257 ~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~--~Lasg~~dg~v~vW 334 (884)
....|.+||.....+|++.+||++.|||++..+.+...... ..+.|.|+++.+.|||-|- +|.....-+.+.|-
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss----trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS----TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV 279 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc----cCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence 34567999999999999999999999999874433332222 1234899999999998554 34443333678888
Q ss_pred eccCCee
Q 002753 335 SVSGCRL 341 (884)
Q Consensus 335 ~~~~~~l 341 (884)
|+.+++-
T Consensus 280 D~R~~~~ 286 (344)
T KOG4532|consen 280 DTRNYVN 286 (344)
T ss_pred EcccCce
Confidence 8876653
No 265
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.15 E-value=8.5e-05 Score=84.64 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=87.7
Q ss_pred EEEEcCCcEEEEeecC---Cccceeeecccccc--cCCCCcEE-EEEcCCCCEEEE-EecCC--eEEEEEccCCCcceEE
Q 002753 224 FVLYSNGQLMSCSVSK---KGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAV-GTRRG--VVELYDLAESASLIRT 294 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d---~~i~~w~~~~~~~~--~~h~~~v~-va~sp~~~~la~-g~~dg--~v~lw~~~~~~~~~~~ 294 (884)
..++|||+.++....+ ..+.+|+..+++.. ..+...+. .+|+||++.|+. .+.++ .|.+|++.+ + ....
T Consensus 195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~-~-~~~~ 272 (417)
T TIGR02800 195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG-K-QLTR 272 (417)
T ss_pred ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC-C-CEEE
Confidence 3467888877765533 34667776654322 22333333 899999987764 44444 577778765 3 3333
Q ss_pred EeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC-C--cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceee
Q 002753 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (884)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d-g--~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~s 371 (884)
+.. +.+.....+|+|||+.|+..+.. + .|.++++.++.. ..+..+ ......+.++|++ ..++.
T Consensus 273 l~~--------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~-~~~~~~~~~spdg----~~i~~ 338 (417)
T TIGR02800 273 LTN--------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFR-GGYNASPSWSPDG----DLIAF 338 (417)
T ss_pred CCC--------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecC-CCCccCeEECCCC----CEEEE
Confidence 333 44445677999999988876653 3 477777776653 233322 2345677888887 44432
Q ss_pred cc------eeEEEecCCceE
Q 002753 372 GT------SMMQWDEYGYRL 385 (884)
Q Consensus 372 g~------~i~~W~~~~~~l 385 (884)
.. .+..|+..++..
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred EEccCCceEEEEEeCCCCCe
Confidence 21 566677666544
No 266
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=9.8e-05 Score=77.29 Aligned_cols=199 Identities=9% Similarity=-0.006 Sum_probs=121.5
Q ss_pred ecCeEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEE-EecC--cEEEEEEEEecCceeec
Q 002753 29 VNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAV-VTSS--LYLHIFKVQITEKSIQI 105 (884)
Q Consensus 29 pdg~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav-~t~~--g~l~l~~l~~~~~~~~~ 105 (884)
.||.+++..+++.+++|+.. -... |.....-++..+....|.=.|....+++ |... +-+.+|+++.+. + .+
T Consensus 114 ~dg~Litc~~sG~l~~~~~k-~~d~---hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-q-iw 187 (412)
T KOG3881|consen 114 ADGTLITCVSSGNLQVRHDK-SGDL---HSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-Q-IW 187 (412)
T ss_pred cCCEEEEEecCCcEEEEecc-CCcc---ccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccce-e-ee
Confidence 56777777788999999984 2110 0000011122344556667776665555 6666 789999998662 2 22
Q ss_pred CCCCC------CCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccc
Q 002753 106 GGKQP------SGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (884)
Q Consensus 106 ~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i 179 (884)
..... -..++|..+..+- .+. +...++.+|.-+.+++++-. ..+ .
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl-----~g~---------~~~~fat~T~~hqvR~YDt~--~qR-R------------ 238 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFL-----EGS---------PNYKFATITRYHQVRLYDTR--HQR-R------------ 238 (412)
T ss_pred eccCCCCccccceeeeeeccceec-----CCC---------CCceEEEEecceeEEEecCc--ccC-c------------
Confidence 21111 1223443322221 110 14567888889999886532 211 1
Q ss_pred eeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc----cC
Q 002753 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LG 255 (884)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~~ 255 (884)
+|.+++|....-.+....|+|..+.++-..+.+..+|....... .+
T Consensus 239 ------------------------------PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 239 ------------------------------PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred ------------------------------ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 12222333333334556889998888888888888887765432 45
Q ss_pred CCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceE
Q 002753 256 SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (884)
Q Consensus 256 h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~ 293 (884)
..+.++ +-.+|.++++|+|+-|..|||+|+++ .+++.
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~kt-rkll~ 326 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT-RKLLH 326 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeeccc-chhhh
Confidence 566776 88899999999999999999999988 55554
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=0.0003 Score=77.08 Aligned_cols=71 Identities=23% Similarity=0.492 Sum_probs=57.0
Q ss_pred EEEEcCCCCEEEEEecC---CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEE------cCCcE
Q 002753 261 CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW------KSRGL 331 (884)
Q Consensus 261 ~va~sp~~~~la~g~~d---g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~------~dg~v 331 (884)
++-|||.|++|+.++-+ |.+.+||+.+ .+++..+.. .+ -+-++|+|||+++.|+. -|+++
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a---------~~-tt~~eW~PdGe~flTATTaPRlrvdNg~ 384 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKA---------AN-TTVFEWSPDGEYFLTATTAPRLRVDNGI 384 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccc-hhhcccccc---------CC-ceEEEEcCCCcEEEEEeccccEEecCCe
Confidence 48899999999988765 7999999988 666665554 22 35689999999998876 37899
Q ss_pred EEEeccCCeeE
Q 002753 332 TVWSVSGCRLM 342 (884)
Q Consensus 332 ~vW~~~~~~l~ 342 (884)
+||+..|..+.
T Consensus 385 KiwhytG~~l~ 395 (566)
T KOG2315|consen 385 KIWHYTGSLLH 395 (566)
T ss_pred EEEEecCceee
Confidence 99999987654
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=0.00032 Score=78.33 Aligned_cols=147 Identities=13% Similarity=0.165 Sum_probs=102.7
Q ss_pred CCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccc--e------eeecccccccCCCCcEE-EEEcCCCCEEEEEec
Q 002753 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK--L------AEFIKIDKELGSGDAVC-ASIAPEQQILAVGTR 276 (884)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~--~------w~~~~~~~~~~h~~~v~-va~sp~~~~la~g~~ 276 (884)
+....+.+++|+...+++++...||.+-+.-....+.. . -+..-.+.+.||...|. +.||.+.+.|-+...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 44566888899888888888888887766544322211 0 01111223368999888 999999999999999
Q ss_pred CCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEE-Eeccccccceee
Q 002753 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS-TIRQISLSSISS 355 (884)
Q Consensus 277 dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~-tl~~~~~~~v~s 355 (884)
+|-|.||-+.. ++.....-... ...-|.+++|..||+.++..++||.|.|=++.|++... .+++. -...
T Consensus 92 ~GlIiVWmlyk-gsW~EEMiNnR------nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~---~l~h 161 (1189)
T KOG2041|consen 92 SGLIIVWMLYK-GSWCEEMINNR------NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ---LLAH 161 (1189)
T ss_pred CceEEEEeeec-ccHHHHHhhCc------CccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh---eccc
Confidence 99999999987 54332211110 35668999999999999999999999999999988654 33332 1235
Q ss_pred eeecCCC
Q 002753 356 PIVKPNQ 362 (884)
Q Consensus 356 ~~~s~~~ 362 (884)
+.+++|.
T Consensus 162 v~ws~D~ 168 (1189)
T KOG2041|consen 162 VLWSEDL 168 (1189)
T ss_pred eeecccH
Confidence 5666665
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.00018 Score=82.34 Aligned_cols=128 Identities=9% Similarity=0.124 Sum_probs=73.5
Q ss_pred EEEEEcCCcEEEEeec-CCc--cceeeeccccc--ccCCCCcE-EEEEcCCCCEEEE-EecCCe--EEEEEccCCCcceE
Q 002753 223 LFVLYSNGQLMSCSVS-KKG--LKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAV-GTRRGV--VELYDLAESASLIR 293 (884)
Q Consensus 223 ~~~~s~dG~~~~~~~~-d~~--i~~w~~~~~~~--~~~h~~~v-~va~sp~~~~la~-g~~dg~--v~lw~~~~~~~~~~ 293 (884)
...++|||+.++..+. ++. +.+++...++. +....... ..+|||||+.||. .+.+|. |.++|+++ + ...
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t-g-~~~ 299 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT-K-ALT 299 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC-C-CeE
Confidence 3456888887765543 333 44555544332 11111222 3789999998875 466675 66666655 3 333
Q ss_pred EEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEc-CCc--EEEEeccCCeeEEEeccccccceeeeeecCCC
Q 002753 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 294 ~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-dg~--v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
.+.. +.+.....+|||||+.|+..+. ++. +.++++.++... .+... .....+++++|++
T Consensus 300 ~lt~--------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~-g~~~~~~~~SpDG 361 (448)
T PRK04792 300 RITR--------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFE-GEQNLGGSITPDG 361 (448)
T ss_pred ECcc--------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecC-CCCCcCeeECCCC
Confidence 3333 4445677899999998876654 344 555566666532 22211 1123456788887
No 270
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.08 E-value=0.00025 Score=81.16 Aligned_cols=146 Identities=13% Similarity=0.100 Sum_probs=82.3
Q ss_pred EEEEcCCcEEEEeecC-C--ccceeeecccccc--cCCCCcE-EEEEcCCCCEEEE-EecCC--eEEEEEccCCCcceEE
Q 002753 224 FVLYSNGQLMSCSVSK-K--GLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAV-GTRRG--VVELYDLAESASLIRT 294 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d-~--~i~~w~~~~~~~~--~~h~~~v-~va~sp~~~~la~-g~~dg--~v~lw~~~~~~~~~~~ 294 (884)
..++|||+.++..+.+ + .+.+++...++.. ....... ..+|||||+.||. ...+| .|.+||+++ +. ...
T Consensus 204 p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~-~~-~~~ 281 (430)
T PRK00178 204 PRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS-RQ-LSR 281 (430)
T ss_pred eeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEE
Confidence 4457888876654433 2 3445565544321 2222223 3799999998884 44455 577778876 33 333
Q ss_pred EeeccCCCCCCCCcCeEEEEECCCCCEEEEEEc-CC--cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceee
Q 002753 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (884)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~-dg--~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~s 371 (884)
+.. +.+......|+|||+.|+..+. +| .|.++++.++... .+... ......+.++|++ ..++-
T Consensus 282 lt~--------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~-~~~~~~~~~Spdg----~~i~~ 347 (430)
T PRK00178 282 VTN--------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFV-GNYNARPRLSADG----KTLVM 347 (430)
T ss_pred ccc--------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccceEECCCC----CEEEE
Confidence 433 4455667899999998876664 33 4666677666532 22211 1123356788887 43321
Q ss_pred cc------eeEEEecCCceE
Q 002753 372 GT------SMMQWDEYGYRL 385 (884)
Q Consensus 372 g~------~i~~W~~~~~~l 385 (884)
.. .+..|+..+++.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred EEccCCceEEEEEECCCCCE
Confidence 11 355666665544
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.03 E-value=0.0068 Score=65.23 Aligned_cols=94 Identities=14% Similarity=0.324 Sum_probs=69.7
Q ss_pred CcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCC----cEEE
Q 002753 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR----GLTV 333 (884)
Q Consensus 258 ~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg----~v~v 333 (884)
..-.+..+|+|+.++++-....+.+.|+++ + ..+.+... ..+-|+...|+|+++++|-+.-+| .|++
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididn-g-nv~~idkS-------~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDN-G-NVRLIDKS-------EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecC-C-CeeEeccc-------ccceeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence 333489999999999998888999999987 3 33433331 467899999999999999876554 7999
Q ss_pred EeccCCeeEEEeccccccceeeeeecCCC
Q 002753 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 334 W~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
+|+.+++....-.. .+.--+++|.|++
T Consensus 474 ydm~~~Kiy~vTT~--ta~DfsPaFD~d~ 500 (668)
T COG4946 474 YDMDGGKIYDVTTP--TAYDFSPAFDPDG 500 (668)
T ss_pred EecCCCeEEEecCC--cccccCcccCCCC
Confidence 99999886654332 1223467787876
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.02 E-value=1.2e-05 Score=89.60 Aligned_cols=201 Identities=11% Similarity=0.033 Sum_probs=128.4
Q ss_pred ccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc-----cCCCCcEEEEEcCCCCEEEEEecCC
Q 002753 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVCASIAPEQQILAVGTRRG 278 (884)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~~h~~~v~va~sp~~~~la~g~~dg 278 (884)
+-++...|++|.|++.. -.++++.+-|..+..|+...+..- .-|+.+..|+||-...-+...+...
T Consensus 110 lhghsraitd~n~~~q~---------pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQH---------PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred EecCccceeccccCCCC---------CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence 34567778888876532 235666677777888888776542 2355666689987544343446667
Q ss_pred eEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeee
Q 002753 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (884)
Q Consensus 279 ~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~ 357 (884)
.|++||...++..+..+++ |...|..++|.. .-..+.+.+.||+|+.||.........-..-....+.-..
T Consensus 181 ~i~vwd~r~gs~pl~s~K~--------~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r 252 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKG--------HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGR 252 (1081)
T ss_pred ceEEEeccCCCcceEEecc--------cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecc
Confidence 8999999985667778888 888999999875 3446778888999999998654322111111122344444
Q ss_pred ecCCCCCCccceeecc----------eeEEEecC-CceEEEEecCCcceEEEEee---c----------ceeecccCCCC
Q 002753 358 VKPNQDCKYEPLMSGT----------SMMQWDEY-GYRLYAIEEGSSERVLIFSF---G----------KCCLNRGVSGM 413 (884)
Q Consensus 358 ~s~~~~~~~~~l~sg~----------~i~~W~~~-~~~l~~~~~~~~~~v~~~~~---~----------~~~~s~~~d~~ 413 (884)
+-|.++...-...-|. ....|+.. ..+.+.+..||++.|..|-+ . -.++|-+.|.+
T Consensus 253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~ 332 (1081)
T KOG0309|consen 253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT 332 (1081)
T ss_pred ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence 5555521111111111 33445543 34667788899988866544 1 15789999999
Q ss_pred ceeeeeee
Q 002753 414 TYARQVIY 421 (884)
Q Consensus 414 ~~~w~l~~ 421 (884)
+++|.+..
T Consensus 333 lrlWpI~~ 340 (1081)
T KOG0309|consen 333 LRLWPIDS 340 (1081)
T ss_pred eEeeeccH
Confidence 99998753
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.98 E-value=0.026 Score=61.39 Aligned_cols=277 Identities=13% Similarity=0.080 Sum_probs=146.7
Q ss_pred CeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEec----------CcEEEEEEEEecCceeecCCCC
Q 002753 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQITEKSIQIGGKQ 109 (884)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~----------~g~l~l~~l~~~~~~~~~~~~~ 109 (884)
++|.+-|.. ....++...-. +++. .+ .||||+.|+++.+ ++.|.+||+++....-...-..
T Consensus 27 ~~v~ViD~~-~~~v~g~i~~G------~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGE-AGRVLGMTDGG------FLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECC-CCEEEEEEEcc------CCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 789999995 55555554311 1222 24 9999999999887 6789999997554321111000
Q ss_pred CCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEe-c-CCcEEEEecCCccccceeeeccCCCCccceeecccCC
Q 002753 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-S-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (884)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~-~-~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 187 (884)
.+ +. ..+.......+++|++.+++.. . +..+.+++...... +..++- ++
T Consensus 98 ~p-----------~~---~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv--------------v~ei~v-p~ 148 (352)
T TIGR02658 98 GP-----------RF---LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF--------------VRMMDV-PD 148 (352)
T ss_pred Cc-----------hh---hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE--------------EEEEeC-CC
Confidence 00 00 0111223457788888888765 3 55666655433221 111111 00
Q ss_pred CCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecC-CccceeeecccccccCCCCcEE--EEE
Q 002753 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAVC--ASI 264 (884)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d-~~i~~w~~~~~~~~~~h~~~v~--va~ 264 (884)
+ . ..|......+.+.+.||+.+..+.++ +.... .+.....+-.+.+. -.|
T Consensus 149 ~----------------------~--~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~---~~~~vf~~~~~~v~~rP~~ 201 (352)
T TIGR02658 149 C----------------------Y--HIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI---KPTEVFHPEDEYLINHPAY 201 (352)
T ss_pred C----------------------c--EEEEecCCccEEEeecCceEEEEecCCCceEE---eeeeeecCCccccccCCce
Confidence 0 0 01111112233455777766654433 22110 00000000011111 134
Q ss_pred cC-CCCEEEEEecCCeEEEEEccCCC----cceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEc----------CC
Q 002753 265 AP-EQQILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK----------SR 329 (884)
Q Consensus 265 sp-~~~~la~g~~dg~v~lw~~~~~~----~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~----------dg 329 (884)
++ +++++.+... |+|.+-|+.... ..+..+........| ..+...-++++|||+.+.++.. .+
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w-rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW-RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccccc-CCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 55 7888777555 999998865411 111111110000001 3455566999999998888431 14
Q ss_pred cEEEEeccCCeeEEEeccccccceeeeeecCCCCCCcc-cee--ec--ceeEEEecCCceEEEEe
Q 002753 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLM--SG--TSMMQWDEYGYRLYAIE 389 (884)
Q Consensus 330 ~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~-~l~--sg--~~i~~W~~~~~~l~~~~ 389 (884)
.|.++|..+++.+..+.-. ....+++++|++ . .+. .+ ..+-+.|..+++.+...
T Consensus 280 ~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dg----kp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIELG--HEIDSINVSQDA----KPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEEECCCCeEEEEEeCC--CceeeEEECCCC----CeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 6999999999988887642 467889999998 4 222 11 14666677666665554
No 274
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.97 E-value=0.00028 Score=71.34 Aligned_cols=227 Identities=12% Similarity=0.099 Sum_probs=129.5
Q ss_pred CeEEEEecCCcee--EEEEEeeChHhhhhccceeEEEEcC---Ccc-EEEEEecCcEEEEEEEEecCceeecCCCCCCCc
Q 002753 40 CHIELWSSSQHKV--RLGKYKRDSESVQREGENLQAVWSP---DTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGL 113 (884)
Q Consensus 40 ~~v~IW~~~~~~~--~l~~~~r~~~sl~~~G~~~~v~wsP---Dg~-~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~ 113 (884)
+.+.+|++. ... ++....++..+ ....+.|+. ||. .++.+-+.|.|.+|..........+.+-....+
T Consensus 46 Gkl~Lys~~-d~~~~~l~~~q~~dts-----~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki 119 (339)
T KOG0280|consen 46 GKLHLYSLE-DMKLSPLDTLQCTDTS-----TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI 119 (339)
T ss_pred cceEEEeec-ccccCccceeeeeccc-----ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh
Confidence 356777763 321 12233333322 235777763 444 677777888888888764433322211110000
Q ss_pred eeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCccee
Q 002753 114 FFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASV 193 (884)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~ 193 (884)
.....--..++..+..++++.++|.+....-+.....
T Consensus 120 ---------------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le---------------------------- 156 (339)
T KOG0280|consen 120 ---------------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLE---------------------------- 156 (339)
T ss_pred ---------------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeee----------------------------
Confidence 0000011133445677888888888874432211100
Q ss_pred cCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc-----cCCCCcEE-EEEcC-
Q 002753 194 DTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAP- 266 (884)
Q Consensus 194 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~~h~~~v~-va~sp- 266 (884)
....|+.|+..+...+|+. .+-.++.+|++|+.+.-||...+..+ .-|...|| +.=||
T Consensus 157 ------~vq~wk~He~E~Wta~f~~---------~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~ 221 (339)
T KOG0280|consen 157 ------KVQTWKVHEFEAWTAKFSD---------KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPP 221 (339)
T ss_pred ------ecccccccceeeeeeeccc---------CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCC
Confidence 0012444554444444432 23357778888888888888754443 34666666 55554
Q ss_pred CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCC--CCEEEEEEcCCcEEEEeccCCe
Q 002753 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR 340 (884)
Q Consensus 267 ~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd--g~~Lasg~~dg~v~vW~~~~~~ 340 (884)
+..+||||+.|-.|++||.+..++++..-+ -.|.|..+.++|- +..||+ ..-++.+|-+...+.
T Consensus 222 ~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~---------v~GGVWRi~~~p~~~~~lL~~-CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 222 KPTYIATGSYDECIRVLDTRNMGKPLFKAK---------VGGGVWRIKHHPEIFHRLLAA-CMHNGAKILDSSDKV 287 (339)
T ss_pred CCceEEEeccccceeeeehhcccCccccCc---------cccceEEEEecchhhhHHHHH-HHhcCceEEEecccc
Confidence 678999999999999999986556554322 3588999999994 334444 444778888876553
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.92 E-value=0.0007 Score=67.58 Aligned_cols=169 Identities=11% Similarity=0.016 Sum_probs=108.9
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe-
Q 002753 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR- 340 (884)
Q Consensus 262 va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~- 340 (884)
+++++|++++++-+....|-.|.++.+++.+....... .+..=.+.+||.....+|++..||++.|||+....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~------t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP------TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc------cCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 89999999999999999999999987554433322211 23344788999999999999999999999996533
Q ss_pred eE---EEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCceee
Q 002753 341 LM---STIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR 417 (884)
Q Consensus 341 l~---~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w 417 (884)
++ .+-+.|+.+++..+.|++-+ ... |+ ...+|-+.+..++.
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g----------~lD---------LL-f~sEhfs~~hv~D~---------------- 281 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYG----------LLD---------LL-FISEHFSRVHVVDT---------------- 281 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCC----------cce---------EE-EEecCcceEEEEEc----------------
Confidence 22 23344556777777777654 111 11 11233333322221
Q ss_pred eeeecCCeEEEEecCCCCceeEEEeecc-cccccCCCc-eEEEEEccCCCEEEEEeCCceEEEEccCCcEEEe
Q 002753 418 QVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWP-VQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVF 488 (884)
Q Consensus 418 ~l~~~~~~~~i~~~~~~~~~~w~~~~~p-~~~~~~~~~-I~~va~S~dG~~lavag~dg~iiwd~~s~~w~~f 488 (884)
....+. +.+.+| .....|+.. |....|+.++.-+.+++.+...-|++.+++=..|
T Consensus 282 --R~~~~~--------------q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~srsR~~f 338 (344)
T KOG4532|consen 282 --RNYVNH--------------QVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSRSRFSF 338 (344)
T ss_pred --ccCcee--------------eEEecCccccccccccccccccccCCCcccccccchhhheeeccccceecc
Confidence 111110 111122 234445444 8889999999999999999888999888764444
No 276
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.90 E-value=0.00024 Score=73.21 Aligned_cols=226 Identities=11% Similarity=0.083 Sum_probs=146.9
Q ss_pred EcCCcEEEEeecCCccceeeec-cccccc--CC---CCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccC
Q 002753 227 YSNGQLMSCSVSKKGLKLAEFI-KIDKEL--GS---GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (884)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~-~~~~~~--~h---~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~ 300 (884)
-|...-+++.+.|.++++|--. .++.|. .| ....+.+++++.+.|.+|-.+|++.-+.+...-......+.
T Consensus 33 ~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~--- 109 (404)
T KOG1409|consen 33 IPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKD--- 109 (404)
T ss_pred ccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhh---
Confidence 3444456666788888888543 334442 12 22334899999999999999999998887652221111111
Q ss_pred CCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec--ccccc---ceeeeeecCCCCCCccceeeccee
Q 002753 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR--QISLS---SISSPIVKPNQDCKYEPLMSGTSM 375 (884)
Q Consensus 301 ~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~--~~~~~---~v~s~~~s~~~~~~~~~l~sg~~i 375 (884)
...|.+.|..+-|+-.-..+++.+.|..+.---...+..+.... ..... .+. .+|.-+. ..-++.
T Consensus 110 --~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~fvGd~-------~gqvt~ 179 (404)
T KOG1409|consen 110 --YLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-YAFVGDH-------SGQITM 179 (404)
T ss_pred --hhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE-EEEeccc-------ccceEE
Confidence 11389999999999999999999998776433333222111100 00000 000 1111100 000244
Q ss_pred EEEecCCceEEEEecCCcceEEEEee---cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCC
Q 002753 376 MQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (884)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~ 452 (884)
.-....+-.++....+|.+.+..+.+ .+.+.+|..|..+.+|++...... .....+|+
T Consensus 180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-------------------~~el~gh~ 240 (404)
T KOG1409|consen 180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-------------------AYELQGHN 240 (404)
T ss_pred EEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-------------------eeeeccch
Confidence 55566677788888999999988777 557789999999999997654442 23456888
Q ss_pred CceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002753 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 453 ~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~ 484 (884)
..|+.+..-+--+.+.+++.||.+ +||++..+
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 889888888888999999999999 99997654
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.89 E-value=5.5e-05 Score=92.40 Aligned_cols=182 Identities=9% Similarity=0.135 Sum_probs=123.8
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 002753 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (884)
Q Consensus 261 ~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~ 340 (884)
|+.-+|...+-.+|+.||.|++|.... +..+.+++.. -+..|+.+.|+..|..+..+..||.+.+|.+. .+
T Consensus 2213 r~~sHp~~~~Yltgs~dgsv~~~~w~~-~~~v~~~rt~-------g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2213 RMTSHPSDPYYLTGSQDGSVRMFEWGH-GQQVVCFRTA-------GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred eecCCCCCceEEecCCCceEEEEeccC-CCeEEEeecc-------CcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 477788888999999999999999877 6666666541 24789999999999999999999999999987 44
Q ss_pred eEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCC-ceEEEEecCCcceE--EEEee-cceeecccCCCCcee
Q 002753 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYG-YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYA 416 (884)
Q Consensus 341 l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~-~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~ 416 (884)
.+.+.+-| ....+..+|-...-.+...--.+.++..||..- ...+.+...|.+.. .++-+ ...+++|+.+|.+++
T Consensus 2284 ~~~s~qch-nk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2284 PYTSWQCH-NKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred ceeccccC-CccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 55555545 333444444221100000000112677888632 22222224455544 55555 678899999999999
Q ss_pred eeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccC
Q 002753 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (884)
Q Consensus 417 w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s 482 (884)
||+.+... -|.++. +. ...++.+|+..|.+ ||++..
T Consensus 2363 ~D~rqrql-------------------------~h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2363 FDIRQRQL-------------------------RHTFQA----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred eehHHHHH-------------------------HHHhhh----hh-hhheeeccCcccceEEEEccc
Confidence 99866443 344444 44 66799999999999 999865
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=0.0091 Score=65.58 Aligned_cols=271 Identities=17% Similarity=0.242 Sum_probs=151.0
Q ss_pred EEEEcCCcEEEEeecCCccceeeecccccc--cCCCCcEEEEEcCCCCEEEEEec-----------CCeEEEEEccCCCc
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTR-----------RGVVELYDLAESAS 290 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~~h~~~v~va~sp~~~~la~g~~-----------dg~v~lw~~~~~~~ 290 (884)
+-.||-|.++++ .....+.+|.+.+..+. -.|.+.-.+.|||..++|+|-+. ...+.|||+.+ +.
T Consensus 216 v~wSP~GTYL~t-~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t-G~ 293 (698)
T KOG2314|consen 216 VRWSPKGTYLVT-FHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT-GL 293 (698)
T ss_pred EEecCCceEEEE-EeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-cc
Confidence 446788887764 45556778887765443 45766666999999999998753 25799999999 77
Q ss_pred ceEEEeeccCCCCCCCCcCe-EEEEECCCCCEEEEEEcCCcEEEEeccCCeeEE--EeccccccceeeeeecCCCCCCcc
Q 002753 291 LIRTVSLYDWGYSMDDTGPV-SCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS--TIRQISLSSISSPIVKPNQDCKYE 367 (884)
Q Consensus 291 ~~~~l~~~~~~~~~~h~~~V-~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~--tl~~~~~~~v~s~~~s~~~~~~~~ 367 (884)
..+.+...+ ..-.+ .-..||.|++++|--.. .+|.|++...-.++. +++ -+.|....|+|.+ .
T Consensus 294 lkrsF~~~~------~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk---i~gIr~FswsP~~----~ 359 (698)
T KOG2314|consen 294 LKRSFPVIK------SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK---ISGIRDFSWSPTS----N 359 (698)
T ss_pred hhcceeccC------CCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccC---CccccCcccCCCc----c
Confidence 777665521 11112 34789999999998877 689999987644332 111 2345556677765 3
Q ss_pred ceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccC----CCCceeeeeeecCCeEEEEecCC-CC----c--
Q 002753 368 PLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV----SGMTYARQVIYGEDRLLVVQSED-TD----E-- 436 (884)
Q Consensus 368 ~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~----d~~~~~w~l~~~~~~~~i~~~~~-~~----~-- 436 (884)
.+..|.+++...-.. -.+..++..+.+-+.+. |.. ..|. ...+++-++...- .. .
T Consensus 360 ------llAYwtpe~~~~par-----vtL~evPs~~~iRt~nlfnVsDck-LhWQ--k~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 360 ------LLAYWTPETNNIPAR-----VTLMEVPSKREIRTKNLFNVSDCK-LHWQ--KSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred ------eEEEEcccccCCcce-----EEEEecCccceeeeccceeeeccE-EEec--cCCcEEEEEEEeeccccccceEe
Confidence 334676655432110 01111111111111110 000 0011 1222222221110 00 0
Q ss_pred ----eeEEEeecccccccCCCceEEEEEccCCCEEEEEeCC---ceE-EEEcc--CCcEEEecCccceeeeEEEEEEEe-
Q 002753 437 ----LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH---GLI-LYDIR--QKKWRVFGDITQEQKIQSKGLLWL- 505 (884)
Q Consensus 437 ----~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~d---g~i-iwd~~--s~~w~~f~~~~~e~~~~v~~~~W~- 505 (884)
+....-.+|-....-..+|-..+|-|.|..+|+-+.+ .++ .|-++ .++|++..... ...+..+.|.
T Consensus 426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsP 502 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSP 502 (698)
T ss_pred eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcC
Confidence 0011112343333445678889999999987765433 345 78776 34565432211 1235567886
Q ss_pred -CCEEEEEEEecCCCeEEEEEeeCC
Q 002753 506 -GKIIVVCNYIDSSNTYELLFYPRY 529 (884)
Q Consensus 506 -~~~lv~~~~~~~~~~~elr~y~~~ 529 (884)
|..+++++.. +..+.+.+|+.+
T Consensus 503 kG~fvvva~l~--s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 503 KGRFVVVAALV--SRRGDLEFYDTD 525 (698)
T ss_pred CCcEEEEEEec--ccccceEEEecc
Confidence 6777777554 466788899874
No 279
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.88 E-value=0.00079 Score=68.14 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=75.6
Q ss_pred EEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccccCCCCcEE-EEEcCC-CCEEEEEecCCeEEEEEccCCCc
Q 002753 213 WLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESAS 290 (884)
Q Consensus 213 ~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~~h~~~v~-va~sp~-~~~la~g~~dg~v~lw~~~~~~~ 290 (884)
++.|++.....++-.++|++..+...+ -...+.+.|+.|+-... ++|+-. -+++.+|+.||.+.-||++.+.+
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~-----~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETE-----MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecce-----eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 444544443434444556554322222 12334445677776555 677653 46899999999999999985333
Q ss_pred ceEE-EeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEeccC
Q 002753 291 LIRT-VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 338 (884)
Q Consensus 291 ~~~~-l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~~~ 338 (884)
.+.. .+. |+..|.++.-|| ++.++++|+.|-.+++||...
T Consensus 201 ~i~~n~kv--------H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 201 FIWHNSKV--------HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred eeeeccee--------eecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 3322 333 888999998886 699999999999999999874
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.87 E-value=0.0001 Score=77.53 Aligned_cols=85 Identities=19% Similarity=0.345 Sum_probs=67.9
Q ss_pred ccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcE
Q 002753 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (884)
Q Consensus 253 ~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v 331 (884)
..||-..+. ++++||++.|.++..|+.||+=.... .-.+..+ ..+|+.-|..++.-+ ++.|++|+.|+++
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~Iesf-------clGH~eFVS~isl~~-~~~LlS~sGD~tl 217 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESF-------CLGHKEFVSTISLTD-NYLLLSGSGDKTL 217 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhh-------ccccHhheeeeeecc-CceeeecCCCCcE
Confidence 378999888 99999999999999999999965543 2222222 224999999998865 4569999999999
Q ss_pred EEEeccCCeeEEEec
Q 002753 332 TVWSVSGCRLMSTIR 346 (884)
Q Consensus 332 ~vW~~~~~~l~~tl~ 346 (884)
++||..+|+++.++.
T Consensus 218 r~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCD 232 (390)
T ss_pred EEEecccCCcccccc
Confidence 999999998876653
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=2.8e-05 Score=83.85 Aligned_cols=168 Identities=17% Similarity=0.208 Sum_probs=102.3
Q ss_pred cCCCCcEE-E-EEcCCCCEEEEEecCCeEEEEEccCCCcce------EEEeeccCCCCCCCCcCeEEEEECCCCCEEEEE
Q 002753 254 LGSGDAVC-A-SIAPEQQILAVGTRRGVVELYDLAESASLI------RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (884)
Q Consensus 254 ~~h~~~v~-v-a~sp~~~~la~g~~dg~v~lw~~~~~~~~~------~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 325 (884)
.||...++ + +++ +.+-+++++.|.+|++|.++.++..+ .+... |+.+|.++.|-.|-+.+|++
T Consensus 732 ~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a--------Hkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA--------HKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred cCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhh--------ccCcccceeeeeccceeeec
Confidence 57877776 3 444 44556788999999999998644322 23333 99999999999999988775
Q ss_pred EcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeeccee
Q 002753 326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCC 405 (884)
Q Consensus 326 ~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~ 405 (884)
||++.+||.+-++++....+. |.. -+|..++.-. .-+ ...+
T Consensus 803 --D~giHlWDPFigr~Laq~~da-----------pk~-------~a~~~ikcl~-----------nv~--------~~il 843 (1034)
T KOG4190|consen 803 --DGGIHLWDPFIGRLLAQMEDA-----------PKE-------GAGGNIKCLE-----------NVD--------RHIL 843 (1034)
T ss_pred --cCcceeecccccchhHhhhcC-----------ccc-------CCCceeEecc-----------cCc--------chhe
Confidence 789999999988776544321 000 0001111100 000 0011
Q ss_pred ec-ccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 002753 406 LN-RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (884)
Q Consensus 406 ~s-~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~ 483 (884)
.. ++...++++.|....+-. ..|+.- .-.+.|.-+|++++-+.|+++|+|=.+|.+ +-|..+|
T Consensus 844 iAgcsaeSTVKl~DaRsce~~-----------~E~kVc----na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 844 IAGCSAESTVKLFDARSCEWT-----------CELKVC----NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNG 908 (1034)
T ss_pred eeeccchhhheeeecccccce-----------eeEEec----cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCC
Confidence 11 133444444443222110 001110 112345568999999999999999999999 9999998
Q ss_pred c
Q 002753 484 K 484 (884)
Q Consensus 484 ~ 484 (884)
+
T Consensus 909 ~ 909 (1034)
T KOG4190|consen 909 K 909 (1034)
T ss_pred c
Confidence 6
No 282
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.81 E-value=4.2e-05 Score=54.42 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.6
Q ss_pred ccccccCCCceEEEEEccCCCEEEEEeCCceE-EEE
Q 002753 445 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (884)
Q Consensus 445 p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd 479 (884)
..++.+|..+|++++|+|++++||+|+.|+.+ +||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678999999999999999999999999999 997
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.81 E-value=0.0026 Score=71.84 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=43.4
Q ss_pred EEEcCCCCEEEEEecC---------CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCC---
Q 002753 262 ASIAPEQQILAVGTRR---------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--- 329 (884)
Q Consensus 262 va~sp~~~~la~g~~d---------g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg--- 329 (884)
.+|||||+.||..+.. ..|.+.|++. +. .+.+.. .+.....+|||||+.++-...++
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~-~~~LT~---------~~~~~~p~~SPDG~~I~f~~~~~~~~ 392 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY-IRRLTA---------NGVNQFPRFSSDGGSIMFIKYLGNQS 392 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-eEECCC---------CCCcCCeEECCCCCEEEEEEccCCcE
Confidence 5899999999877654 2567767665 33 333332 12223578999999887765443
Q ss_pred cEEEEeccCCe
Q 002753 330 GLTVWSVSGCR 340 (884)
Q Consensus 330 ~v~vW~~~~~~ 340 (884)
.+.+.++.|+.
T Consensus 393 ~L~~~~l~g~~ 403 (419)
T PRK04043 393 ALGIIRLNYNK 403 (419)
T ss_pred EEEEEecCCCe
Confidence 35566776653
No 284
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.78 E-value=0.011 Score=66.56 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=51.3
Q ss_pred CceEEEEEecCeEEEEEccC------------eEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecC
Q 002753 21 SQQIIYFKVNNGLLLIASPC------------HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS 88 (884)
Q Consensus 21 ~~~vv~fspdg~lla~~t~~------------~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~ 88 (884)
....++.+|.|-.+|+..+. .|.||+.. +.++++.. ... |.+.++.|+.+ ..|++.+.+
T Consensus 30 ~~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s--G~ll~~i~-----w~~-~~iv~~~wt~~-e~LvvV~~d 100 (410)
T PF04841_consen 30 SDYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS--GKLLSSIP-----WDS-GRIVGMGWTDD-EELVVVQSD 100 (410)
T ss_pred cceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC--CCEeEEEE-----ECC-CCEEEEEECCC-CeEEEEEcC
Confidence 35678889999999988665 68999885 44555543 222 78899999985 566677799
Q ss_pred cEEEEEEEE
Q 002753 89 LYLHIFKVQ 97 (884)
Q Consensus 89 g~l~l~~l~ 97 (884)
|.+++|++.
T Consensus 101 G~v~vy~~~ 109 (410)
T PF04841_consen 101 GTVRVYDLF 109 (410)
T ss_pred CEEEEEeCC
Confidence 999999985
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.77 E-value=0.00011 Score=89.76 Aligned_cols=186 Identities=16% Similarity=0.183 Sum_probs=117.6
Q ss_pred eEEEEeec--CCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccE
Q 002753 134 SVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (884)
Q Consensus 134 ~v~~i~~~--~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 211 (884)
.|+++... .-.-+.|+.||.++.+.|...... ...+. .+ .+.+
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v-------------------------~~~rt---------~g-~s~v 2254 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV-------------------------VCFRT---------AG-NSRV 2254 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeE-------------------------EEeec---------cC-cchh
Confidence 35555332 345677888999999888533211 01110 11 1446
Q ss_pred EEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeeccccc---ccCCCCcEE-EEEcCCCCEEEEEe---cCCeEEEEE
Q 002753 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGT---RRGVVELYD 284 (884)
Q Consensus 212 ~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~---~~~h~~~v~-va~sp~~~~la~g~---~dg~v~lw~ 284 (884)
+.+.|+..++.+.+..-|| .+.+|... ++. ++.|..+.. .+|=. .++|+++ .++.+.+||
T Consensus 2255 tr~~f~~qGnk~~i~d~dg----------~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwD 2321 (2439)
T KOG1064|consen 2255 TRSRFNHQGNKFGIVDGDG----------DLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWD 2321 (2439)
T ss_pred hhhhhcccCCceeeeccCC----------ceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchh
Confidence 6666655555444444444 44445443 111 256777665 55533 6677664 467999999
Q ss_pred ccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCC
Q 002753 285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 364 (884)
Q Consensus 285 ~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~ 364 (884)
.-..+.....-.. |.+.++++++.|.-+.|++|+++|.|++||+.-.++.++++.- + .
T Consensus 2322 tl~~~~~s~v~~~--------H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~----------~-~--- 2379 (2439)
T KOG1064|consen 2322 TLLPPMNSLVHTC--------HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL----------D-T--- 2379 (2439)
T ss_pred cccCcccceeeee--------cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh----------h-h---
Confidence 7653322222244 9999999999999999999999999999999988877766541 1 1
Q ss_pred Cccceeecc---eeEEEecCCceEEEEec
Q 002753 365 KYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (884)
Q Consensus 365 ~~~~l~sg~---~i~~W~~~~~~l~~~~~ 390 (884)
.+.+.+|+ .+++|+..+..++....
T Consensus 2380 -~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2380 -REYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred -hheeeccCcccceEEEEccccchhhcCc
Confidence 15566665 89999998877766553
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.74 E-value=0.043 Score=59.32 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=70.7
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCC-eEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcE
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg-~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v 331 (884)
.+|...+. ..+.-+.+-++.|..|| .+-|||.+. ...+.+.. .-|.|.+++.+|||+.++++.....+
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~--------~lg~I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEK--------DLGNIEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeC--------CccceEEEEEcCCCcEEEEEcCceEE
Confidence 45666677 78888888899999999 899999876 44444554 57889999999999999999887888
Q ss_pred EEEeccCCeeEEEeccccccceeeeeecCCC
Q 002753 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 332 ~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
-+.|+.++... .+.....+-++..+++|++
T Consensus 426 ~vididngnv~-~idkS~~~lItdf~~~~ns 455 (668)
T COG4946 426 WVIDIDNGNVR-LIDKSEYGLITDFDWHPNS 455 (668)
T ss_pred EEEEecCCCee-EecccccceeEEEEEcCCc
Confidence 88888877532 1111112345555555554
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.74 E-value=0.011 Score=74.50 Aligned_cols=116 Identities=10% Similarity=0.094 Sum_probs=76.1
Q ss_pred EEEEcCCc-EEEEeecCCccceeeecccccc---------------cC----------CCCcEEEEEcCCCCEEEEEecC
Q 002753 224 FVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE---------------LG----------SGDAVCASIAPEQQILAVGTRR 277 (884)
Q Consensus 224 ~~~s~dG~-~~~~~~~d~~i~~w~~~~~~~~---------------~~----------h~~~v~va~sp~~~~la~g~~d 277 (884)
+++++||+ ++++...++.++.|+..++... .+ ...+..++++++|+++++-+.+
T Consensus 745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N 824 (1057)
T PLN02919 745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN 824 (1057)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence 45677776 5665556667777765432110 00 0123458899999999998999
Q ss_pred CeEEEEEccCCCcceEEEeec-cCCC-----CCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee
Q 002753 278 GVVELYDLAESASLIRTVSLY-DWGY-----SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (884)
Q Consensus 278 g~v~lw~~~~~~~~~~~l~~~-~~~~-----~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l 341 (884)
++|++||.++ +. +.++.+. ..++ ..+.-.....+++++||+.+++-+.++.|++||+.++..
T Consensus 825 ~rIrviD~~t-g~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 825 HKIKKLDPAT-KR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCC-Ce-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999999876 33 3333221 0001 011223467899999999988888889999999988754
No 288
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.72 E-value=0.00057 Score=76.03 Aligned_cols=75 Identities=23% Similarity=0.450 Sum_probs=60.7
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 002753 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 257 ~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~ 336 (884)
+.++|+++||+.+.++.||.||+|.+||... + .....+ +.-..+.++|+|+|..+++|++.|.+.+||+
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~-~t~~~k---------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTR-G-VTLLAK---------AEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCC-C-eeeeee---------ecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 4567799999999999999999999999876 2 222222 3445688999999999999999999999999
Q ss_pred cCCeeE
Q 002753 337 SGCRLM 342 (884)
Q Consensus 337 ~~~~l~ 342 (884)
.-+.+.
T Consensus 329 ALspi~ 334 (545)
T PF11768_consen 329 ALSPIK 334 (545)
T ss_pred ecCccc
Confidence 755443
No 289
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.70 E-value=0.013 Score=62.24 Aligned_cols=257 Identities=16% Similarity=0.160 Sum_probs=131.6
Q ss_pred EEEEecCeEEEEEc-----------cCeEEEEecCCceeEEEEEeeChH-hhhhccceeEEEEcCCccEEEEEe--cCcE
Q 002753 25 IYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSE-SVQREGENLQAVWSPDTKLIAVVT--SSLY 90 (884)
Q Consensus 25 v~fspdg~lla~~t-----------~~~v~IW~~~~~~~~l~~~~r~~~-sl~~~G~~~~v~wsPDg~~Lav~t--~~g~ 90 (884)
+.+||||+.+.+++ .+-|.+||. +...+.+...-+.+ ....--......+|.|++++++.. -...
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~-~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDT-QTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEET-TTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEec-CcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 45899999877652 246999999 58888887765543 111001112356777777665532 1223
Q ss_pred EEEEEEEecCceeecCCCCCCCceeeeeeeeeeccccccccceeEEEEeecCCeEEEEecCCcEEEEecCCccccceeee
Q 002753 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELV 170 (884)
Q Consensus 91 l~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~ 170 (884)
|-+.|++..+ +-..+...+ +....-..+..+..-+.||.+..+..+.+-.....
T Consensus 120 VtVVDl~~~k---------------------vv~ei~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~-- 173 (342)
T PF06433_consen 120 VTVVDLAAKK---------------------VVGEIDTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK-- 173 (342)
T ss_dssp EEEEETTTTE---------------------EEEEEEGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE--
T ss_pred EEEEECCCCc---------------------eeeeecCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEe--
Confidence 4444432111 001111111 11112222355677788998888877643222110
Q ss_pred ccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccc---eeee
Q 002753 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK---LAEF 247 (884)
Q Consensus 171 ~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~---~w~~ 247 (884)
+.-.|..+.+ --+..-.|....+...+.+-+|+++.+......++ -|..
T Consensus 174 ---------~t~~F~~~~d-------------------p~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 174 ---------STKVFDPDDD-------------------PLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp ---------EEEESSTTTS--------------------B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred ---------eccccCCCCc-------------------ccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 1112222221 01111123344455666777888877665554443 3443
Q ss_pred ccc----ccc-cCCCCcEEEEEcCCCCEEEEEe--------cCC--eEEEEEccCCCcceEEEeeccCCCCCCCCcCeEE
Q 002753 248 IKI----DKE-LGSGDAVCASIAPEQQILAVGT--------RRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC 312 (884)
Q Consensus 248 ~~~----~~~-~~h~~~v~va~sp~~~~la~g~--------~dg--~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~ 312 (884)
.+. ..| .| ..--+++++..+.|.+-. .|+ .|-+||+.+ .+.+..+.. ..++.+
T Consensus 226 ~t~~e~~~~WrPG--G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l---------~~~~~S 293 (342)
T PF06433_consen 226 LTDAEKADGWRPG--GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL---------EHPIDS 293 (342)
T ss_dssp S-HHHHHTTEEE---SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE---------EEEESE
T ss_pred cCccccccCcCCc--ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC---------CCccce
Confidence 321 112 11 111267776555444432 233 366667666 677777775 346889
Q ss_pred EEECCCCC-EEEEE-EcCCcEEEEeccCCeeEEEeccc
Q 002753 313 IAWTPDNS-AFAVG-WKSRGLTVWSVSGCRLMSTIRQI 348 (884)
Q Consensus 313 l~~spdg~-~Lasg-~~dg~v~vW~~~~~~l~~tl~~~ 348 (884)
|+.|.|.+ +|.+. ..++.+.+||..+++++.++.+-
T Consensus 294 i~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 294 IAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred EEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 99999887 55444 45789999999999999988764
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.0047 Score=70.21 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=66.8
Q ss_pred CCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeE-EEEEEEe-CC-----------------EEE
Q 002753 451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-SKGLLWL-GK-----------------IIV 510 (884)
Q Consensus 451 ~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~-v~~~~W~-~~-----------------~lv 510 (884)
...||+.+..|..|+|+|+.-+|.-+ +||+.+-+ ++.. .-..+. ++.|.|. ++ ..+
T Consensus 520 despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~--~lr~--mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~v 595 (1062)
T KOG1912|consen 520 DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR--MLRL--MSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLV 595 (1062)
T ss_pred CcCcceeeeecccCceEEEEecccchHHHhhccch--HHHH--HhhcCCcEEEEeecccCCCCcccccchhhhhhhhcee
Confidence 34689999999999999999999999 99996643 1210 112233 6678886 11 111
Q ss_pred EEEEecCCCeEEEEEeeCC-----CCCCcceE-EEEecCCccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002753 511 VCNYIDSSNTYELLFYPRY-----HLDQSSLL-CRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (884)
Q Consensus 511 ~~~~~~~~~~~elr~y~~~-----~l~~~~~l-~~~~~~~~~~~~~~~~~~llv~~~~~~i~i~~~~ 571 (884)
+- ...|.++|... .-|..++. ..+.+..+.+.|.-.+|+++++.-+|.+.+|++.
T Consensus 596 v~------ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk~d~lv~GD~~GNl~~WDlg 656 (1062)
T KOG1912|consen 596 VL------DSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWKDDILVVGDVEGNLVVWDLG 656 (1062)
T ss_pred ee------ccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhccCCeeEeecccCceeEEecc
Confidence 11 11345555531 11111111 1122222334455577899999999999999975
No 291
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.65 E-value=0.036 Score=62.16 Aligned_cols=248 Identities=19% Similarity=0.154 Sum_probs=124.8
Q ss_pred CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC--CCCEEEEEEcCCcEEEEeccCCeeEEE
Q 002753 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMST 344 (884)
Q Consensus 267 ~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~dg~v~vW~~~~~~l~~t 344 (884)
++..+.+++.||.+..+|.++ ++.+-.... .+.+. -+| ++..+..+..++.+..||..+++...+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~---------~~~~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAED-GKELWRAKL---------SSEVL---SPPLVANGLVVVRTNDGRLTALDAATGERLWT 170 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCC-CcEeeeecc---------Cceee---cCCEEECCEEEEECCCCeEEEEEcCCCceeeE
Confidence 467788889999999999887 555433322 12221 112 344566677789999999988877666
Q ss_pred ecccccc----ceeeeeecCCCCCCccceeec--ceeEEEecCCceEEEEec-CCc---c---eEEEE--ee---cceee
Q 002753 345 IRQISLS----SISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEE-GSS---E---RVLIF--SF---GKCCL 406 (884)
Q Consensus 345 l~~~~~~----~v~s~~~s~~~~~~~~~l~sg--~~i~~W~~~~~~l~~~~~-~~~---~---~v~~~--~~---~~~~~ 406 (884)
....... ...++... ++ ..++.. ..+..++..+++..-... +.. . ++..+ ++ +..+.
T Consensus 171 ~~~~~~~~~~~~~~sp~~~-~~----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy 245 (377)
T TIGR03300 171 YSRVTPALTLRGSASPVIA-DG----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY 245 (377)
T ss_pred EccCCCceeecCCCCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence 5432110 00111111 11 111111 245556655544321110 000 0 00000 00 22223
Q ss_pred cccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc-
Q 002753 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK- 484 (884)
Q Consensus 407 s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~- 484 (884)
.++.++.+..++..++ +..|..- ..... ....++..+++++.+|.+ .+|..+|+
T Consensus 246 ~~~~~g~l~a~d~~tG-------------~~~W~~~-----~~~~~------~p~~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 246 AVSYQGRVAALDLRSG-------------RVLWKRD-----ASSYQ------GPAVDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EEEcCCEEEEEECCCC-------------cEEEeec-----cCCcc------CceEeCCEEEEECCCCeEEEEECCCCcE
Confidence 3333343333333222 2345331 01111 122356788888899988 99998885
Q ss_pred -EEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEEecCCccEEEE--ccCCEEEEEEc
Q 002753 485 -WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD--VYEDYILVTYR 561 (884)
Q Consensus 485 -w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~~l~~~~~l~~~~~~~~~~~~~--~~~~~llv~~~ 561 (884)
|+.-... .. ......-.++.+++++ .+..+.+++.. ...++++.++....+..+ ..++.|+|.+.
T Consensus 302 ~W~~~~~~--~~--~~ssp~i~g~~l~~~~-----~~G~l~~~d~~---tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 302 LWKNDELK--YR--QLTAPAVVGGYLVVGD-----FEGYLHWLSRE---DGSFVARLKTDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred EEcccccc--CC--ccccCEEECCEEEEEe-----CCCEEEEEECC---CCCEEEEEEcCCCccccCCEEECCEEEEEeC
Confidence 5431100 00 1112223466666652 23467777653 456778877766433333 35677888888
Q ss_pred CCeEEEE
Q 002753 562 PFDVHIF 568 (884)
Q Consensus 562 ~~~i~i~ 568 (884)
||.+..|
T Consensus 370 dG~l~~~ 376 (377)
T TIGR03300 370 DGDLYAF 376 (377)
T ss_pred CceEEEe
Confidence 8888776
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.59 E-value=0.0055 Score=69.22 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=56.4
Q ss_pred EEEEEcCCCCE-EEEEecC---CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEE-EcCC--cEE
Q 002753 260 VCASIAPEQQI-LAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSR--GLT 332 (884)
Q Consensus 260 v~va~sp~~~~-la~g~~d---g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-~~dg--~v~ 332 (884)
+.-+|||||+. ++..+.+ ..|.++|+.+ ++ .+.+.. ..+.+...+|||||+.|+.. +.++ .|.
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~-~~~lt~--------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GK-KEKIAS--------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCC-Cc-EEEEec--------CCCcEEeeEECCCCCEEEEEEccCCCcEEE
Confidence 34899999984 6654443 4688888866 43 333333 35566778899999877654 3343 466
Q ss_pred EEeccCCeeEEEeccccccceeeeeecCCC
Q 002753 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 333 vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
++++.++.. ..+..+ ........|+||+
T Consensus 261 ~~dl~~g~~-~~LT~~-~~~d~~p~~SPDG 288 (419)
T PRK04043 261 LYDTNTKTL-TQITNY-PGIDVNGNFVEDD 288 (419)
T ss_pred EEECCCCcE-EEcccC-CCccCccEECCCC
Confidence 667777753 334332 2223456788887
No 293
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.004 Score=70.43 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=78.2
Q ss_pred EEEEcCCcEEEEeecCCccceeeecccccc----cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeec
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~ 298 (884)
.++...++.++.|++.|.+.+++-..++.. .+....++ ..+|++..++|.|++.|.|.++-+..........-.
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t- 117 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT- 117 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec-
Confidence 445566777777777766666554443322 12334556 899999999999999999999988762221111111
Q ss_pred cCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 002753 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (884)
Q Consensus 299 ~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~ 338 (884)
+....|...|++++||+||..+.+|...|.|..-.+..
T Consensus 118 --~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 118 --PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred --cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 01112788999999999999999999999988887765
No 294
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.50 E-value=0.018 Score=72.44 Aligned_cols=212 Identities=10% Similarity=0.080 Sum_probs=111.0
Q ss_pred cEEEEEcCCCCEEEEE-ecCCeEEEEEccCCCcceEEEeecc-CCC--CCC-----C-CcCeEEEEECC-CCCEEEEEEc
Q 002753 259 AVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYD-WGY--SMD-----D-TGPVSCIAWTP-DNSAFAVGWK 327 (884)
Q Consensus 259 ~v~va~sp~~~~la~g-~~dg~v~lw~~~~~~~~~~~l~~~~-~~~--~~~-----h-~~~V~~l~~sp-dg~~Lasg~~ 327 (884)
+..+++++++..|.++ ..++.|+++|..+ ..+.++.+.. .+. ..+ . -..-..++++| +|..+++.+.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 3448899988765554 4457899998865 3454443310 000 000 0 01225799999 5677777778
Q ss_pred CCcEEEEeccCCeeEEEecccc--------------ccceeeeeecCCCCCCcc-ceeecc---eeEEEecCCceEEEEe
Q 002753 328 SRGLTVWSVSGCRLMSTIRQIS--------------LSSISSPIVKPNQDCKYE-PLMSGT---SMMQWDEYGYRLYAIE 389 (884)
Q Consensus 328 dg~v~vW~~~~~~l~~tl~~~~--------------~~~v~s~~~s~~~~~~~~-~l~sg~---~i~~W~~~~~~l~~~~ 389 (884)
++.|++|+..++... ++.+.+ ...-+.++++|++ . .+++.. .+..|+..++......
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG----~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDL----KELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCC----CEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 899999999776532 222111 1123456777776 4 333222 7888887665432211
Q ss_pred cCCc-------------c---------e-EEEEee-cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecc
Q 002753 390 EGSS-------------E---------R-VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (884)
Q Consensus 390 ~~~~-------------~---------~-v~~~~~-~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p 445 (884)
.+.. + . =++++. ++.+++...++.+++|+...+.... ..+....... .. +
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t--iaG~G~~G~~--dG--~ 852 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT--LAGTGKAGFK--DG--K 852 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE--EeccCCcCCC--CC--c
Confidence 1100 0 0 022222 4444555555555555533221110 1110000000 00 0
Q ss_pred cccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 002753 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 446 ~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~ 484 (884)
...+.-.....++++++|+.+++-+.++.| +||+.+++
T Consensus 853 -~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 853 -ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred -ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 001111235689999999988888889999 99998875
No 295
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.49 E-value=0.028 Score=61.45 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=80.9
Q ss_pred EEEEcCCcEEEEeecCCccceeeecccccc--cCCCCcEEEEEcCCCCEEEEEecCCe---------------EEEEEcc
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGV---------------VELYDLA 286 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~~h~~~v~va~sp~~~~la~g~~dg~---------------v~lw~~~ 286 (884)
+..||.|++++.. ....+..|.+....++ .-|.+.-.+.|||.+++|.+=+..+. +.+||+.
T Consensus 38 ~~~SP~G~~l~~~-~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~ 116 (561)
T COG5354 38 VSESPLGTYLFSE-HAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA 116 (561)
T ss_pred eeecCcchheehh-hccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc
Confidence 4458889887753 3345677877654433 34556555999999999998765444 8999998
Q ss_pred CCCcceEEEeeccCCCCCCCCcCeE-EEEECCCCCEEEEEEcCCcEEEEeccCCee---EEEeccccccceeeeeecCCC
Q 002753 287 ESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~-~l~~spdg~~Lasg~~dg~v~vW~~~~~~l---~~tl~~~~~~~v~s~~~s~~~ 362 (884)
. +..+..+..... +.... -+.||-|..++|=-.. ..+.|.++.++.. +..++ ...+....++|.+
T Consensus 117 s-g~iv~sf~~~~q------~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~lr---~~gi~dFsisP~~ 185 (561)
T COG5354 117 S-GMIVFSFNGISQ------PYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKNLR---PVGILDFSISPEG 185 (561)
T ss_pred C-ceeEeeccccCC------cccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhhcc---ccceeeEEecCCC
Confidence 8 777776665221 11123 5889999887775544 5799999733321 12222 2345566677764
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.47 E-value=0.015 Score=61.09 Aligned_cols=93 Identities=13% Similarity=0.207 Sum_probs=58.9
Q ss_pred EEEcC-CCCEEEEEecCCe-EEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC-----CcEEEE
Q 002753 262 ASIAP-EQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-----RGLTVW 334 (884)
Q Consensus 262 va~sp-~~~~la~g~~dg~-v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d-----g~v~vW 334 (884)
++.+| +...+|.+-.-|+ ..+||..+ ++....+....--.-.+| -.|||||++|.+.-.| |.|-||
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~-g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRT-GQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCC-CceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 67788 6778888888885 57888887 666655543111000113 6799999999986543 679999
Q ss_pred ecc-CCeeEEEeccccccceeeeeecCCC
Q 002753 335 SVS-GCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 335 ~~~-~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
|.. +-+.+..+..++-. =..+.+.|++
T Consensus 83 d~~~~~~ri~E~~s~GIG-PHel~l~pDG 110 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIG-PHELLLMPDG 110 (305)
T ss_pred ECcCCcEEEeEecCCCcC-hhhEEEcCCC
Confidence 998 55556666544322 1233445555
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.46 E-value=0.00079 Score=71.07 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=61.2
Q ss_pred CCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecCC
Q 002753 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (884)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~~ 382 (884)
|-.-++.|+||||++++.++.+|..|+|=.....-.+.++--.|..-|+.++.-++ ..++||+ ++++|+..+
T Consensus 150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-----~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-----YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-----ceeeecCCCCcEEEEeccc
Confidence 88999999999999999999999999998876655555554323677887777665 4566665 888888888
Q ss_pred ceEEEEe
Q 002753 383 YRLYAIE 389 (884)
Q Consensus 383 ~~l~~~~ 389 (884)
++++.+.
T Consensus 225 gk~L~t~ 231 (390)
T KOG3914|consen 225 GKLLDTC 231 (390)
T ss_pred CCccccc
Confidence 8776443
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.36 E-value=0.0012 Score=74.45 Aligned_cols=95 Identities=20% Similarity=0.396 Sum_probs=69.6
Q ss_pred cCCCCcEE-EEEcCCC-CEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCc
Q 002753 254 LGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRG 330 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~-~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~ 330 (884)
-+|+.++. +-|+|+. ..+|+++.|..+..||+......+..... | |++ ...|+|+. |+..||+.-. +.
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~--w-----~s~-asqVkwnyk~p~vlasshg-~~ 181 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS--W-----RSA-ASQVKWNYKDPNVLASSHG-ND 181 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec--c-----ccc-CceeeecccCcchhhhccC-Cc
Confidence 57888888 9999974 58999999999999999874444444333 1 444 47799986 6777776544 88
Q ss_pred EEEEecc-CCeeEEEeccccccceeeeee
Q 002753 331 LTVWSVS-GCRLMSTIRQISLSSISSPIV 358 (884)
Q Consensus 331 v~vW~~~-~~~l~~tl~~~~~~~v~s~~~ 358 (884)
+.+||.. |+...+++++| ...+++++|
T Consensus 182 i~vwd~r~gs~pl~s~K~~-vs~vn~~~f 209 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGH-VSSVNSIDF 209 (1081)
T ss_pred eEEEeccCCCcceEEeccc-ceeeehHHH
Confidence 9999985 56677888775 555555554
No 299
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.35 E-value=0.0034 Score=64.99 Aligned_cols=199 Identities=16% Similarity=0.137 Sum_probs=115.1
Q ss_pred cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEE
Q 002753 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~ 332 (884)
.||.+.+. ...=|...-+.+.+.|.++|||--.+.++-.+.+... -..+++++++.++.+.|.+|-+.|++.
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-------mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-------MPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-------CCCCceEeeeeccceEEEEEEecceEE
Confidence 57777776 5555667778899999999999766534444333321 356789999999999999999999999
Q ss_pred EEeccC---CeeEEEeccccccceeeeeecCCCCCCccceeecc--eeEEEecCC-ce-E---EEEecCCcceEEEEeec
Q 002753 333 VWSVSG---CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYG-YR-L---YAIEEGSSERVLIFSFG 402 (884)
Q Consensus 333 vW~~~~---~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~--~i~~W~~~~-~~-l---~~~~~~~~~~v~~~~~~ 402 (884)
-+++.. ...+-...-.+...+..+.|+-.. +.+++.+ +.+.|.-.. +. + ...... .. .+++..
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~----e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~-t~--~~~d~~ 166 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH----EWVLSTGKDKQFAWHCTESGNRLGGYNFETPA-SA--LQFDAL 166 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCc----eeEEEeccccceEEEeeccCCcccceEeeccC-CC--CceeeE
Confidence 888742 222212111124556666665443 3333333 444553211 00 0 000000 00 000000
Q ss_pred ceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002753 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (884)
Q Consensus 403 ~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~ 481 (884)
...-|...+.+..-.+.. ...++..++.+|.+++++.+|.+..+.+.+|..|..+ +||+-
T Consensus 167 -~~fvGd~~gqvt~lr~~~------------------~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQ------------------NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred -EEEecccccceEEEEEee------------------cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 111111111111111111 1122345778999999999999999999999999999 99997
Q ss_pred CCcE
Q 002753 482 QKKW 485 (884)
Q Consensus 482 s~~w 485 (884)
.++-
T Consensus 228 g~~g 231 (404)
T KOG1409|consen 228 GRKG 231 (404)
T ss_pred CCcc
Confidence 6653
No 300
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.35 E-value=0.052 Score=60.84 Aligned_cols=143 Identities=11% Similarity=0.013 Sum_probs=67.5
Q ss_pred CEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC--CCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 002753 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (884)
Q Consensus 269 ~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~~dg~v~vW~~~~~~l~~tl~ 346 (884)
..+..+..+|.+..+|..+ ++.+-...... +...........+.-+| ++..+.+++.+|.+..+|..+++...+..
T Consensus 191 ~~v~~~~~~g~v~ald~~t-G~~~W~~~~~~-~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQT-GQPLWEQRVAL-PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred CEEEEECCCCEEEEEEccC-CCEeeeecccc-CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence 4677888889999999877 54432221100 00000000001111112 34566677778999999998887665543
Q ss_pred cccccceeeeeecCCCCCCccceeec--ceeEEEecCCceEEEEecCCcceEEE-Ee-ecceeecccCCCCceeeeeee
Q 002753 347 QISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGSSERVLI-FS-FGKCCLNRGVSGMTYARQVIY 421 (884)
Q Consensus 347 ~~~~~~v~s~~~s~~~~~~~~~l~sg--~~i~~W~~~~~~l~~~~~~~~~~v~~-~~-~~~~~~s~~~d~~~~~w~l~~ 421 (884)
.. ....+... ++ ..++.. ..+..++..+++.+............ .. -+..+..++.++.+.+++...
T Consensus 269 ~~---~~~~p~~~-~~----~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 269 AS---SYQGPAVD-DN----RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred cC---CccCceEe-CC----EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCC
Confidence 21 11122221 11 222211 26677777666543222111111111 01 144555666677666655433
No 301
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00061 Score=75.84 Aligned_cols=74 Identities=20% Similarity=0.373 Sum_probs=60.8
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeE-EEEECCCCCEEEEEEcCCcEEEEeccCC
Q 002753 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (884)
Q Consensus 261 ~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~-~l~~spdg~~Lasg~~dg~v~vW~~~~~ 339 (884)
.+.|||.-.+||++..+|.|.++.++- +.+-++.. |...|+ +++|.|||++||+|..||+|++-|++.+
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n~--qRlwtip~--------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLNW--QRLWTIPI--------PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEecc--ceeEeccC--------CCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 489999999999999999999988763 44444544 455566 9999999999999999999999999887
Q ss_pred eeEEE
Q 002753 340 RLMST 344 (884)
Q Consensus 340 ~l~~t 344 (884)
..+..
T Consensus 95 ~~l~~ 99 (665)
T KOG4640|consen 95 GRLVS 99 (665)
T ss_pred Cceec
Confidence 65433
No 302
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.30 E-value=0.17 Score=56.98 Aligned_cols=70 Identities=24% Similarity=0.322 Sum_probs=45.8
Q ss_pred CCCceEEEEEccCCCEEEEEeCCceE-EEEccCCc-EEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 002753 451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK-WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 451 ~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~-w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~ 528 (884)
..+++..+++||+|+++|.-..+|.+ +.+..-.+ ...+... .......|.|.|+-.|+..+. .++.++..
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~---~~~~p~~~~WCG~dav~l~~~-----~~l~lvg~ 286 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD---SKSPPKQMAWCGNDAVVLSWE-----DELLLVGP 286 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC---cCCCCcEEEEECCCcEEEEeC-----CEEEEECC
Confidence 35689999999999999999999998 77654332 1112111 112245899998766655442 45666643
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.22 E-value=0.14 Score=61.93 Aligned_cols=278 Identities=11% Similarity=0.053 Sum_probs=135.4
Q ss_pred CcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 002753 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 258 ~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~ 337 (884)
..+.+.|-.+...+.++..+|.|.+-|..+ ..+..... -.+.|.+++||||+..+|....++++-+-+-
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et--~~~eivg~--------vd~GI~aaswS~Dee~l~liT~~~tll~mT~- 138 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPET--LELEIVGN--------VDNGISAASWSPDEELLALITGRQTLLFMTK- 138 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccc--cceeeeee--------ccCceEEEeecCCCcEEEEEeCCcEEEEEec-
Confidence 344577878888888899999998876654 22222222 4567999999999999999888777755432
Q ss_pred CCeeE--EEeccc--cccceeeeeecCC-------CC-C-Cccceeecc--eeEEEecCCceEEEEecCCcceEEEEeec
Q 002753 338 GCRLM--STIRQI--SLSSISSPIVKPN-------QD-C-KYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSFG 402 (884)
Q Consensus 338 ~~~l~--~tl~~~--~~~~v~s~~~s~~-------~~-~-~~~~l~sg~--~i~~W~~~~~~l~~~~~~~~~~v~~~~~~ 402 (884)
.-.++ ..+... ..+..-.+-|-.. .. . -.+....-. ..+.|+ +.+.-..|+| ++..+++++.
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~--~~~~~IsWRg-Dg~~fAVs~~ 215 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD--DHKTSISWRG-DGEYFAVSFV 215 (1265)
T ss_pred cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhc--cCCceEEEcc-CCcEEEEEEE
Confidence 11111 111000 0000111111000 00 0 000000000 000011 1111112222 2222222220
Q ss_pred ceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeC---CceE-EE
Q 002753 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL---HGLI-LY 478 (884)
Q Consensus 403 ~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~---dg~i-iw 478 (884)
........+++|+-. |.- +....|..+..| +++|-|.|..+|+-.. |+.| ++
T Consensus 216 ---~~~~~~RkirV~drE-g~L---------------ns~se~~~~l~~-----~LsWkPsgs~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 216 ---ESETGTRKIRVYDRE-GAL---------------NSTSEPVEGLQH-----SLSWKPSGSLIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred ---eccCCceeEEEeccc-chh---------------hcccCccccccc-----ceeecCCCCeEeeeeecCCCCcEEEE
Confidence 011122566777633 111 111124444444 6899999999998643 4445 88
Q ss_pred EccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEEEecCCccE-EEEccC-CEE
Q 002753 479 DIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPI-VMDVYE-DYI 556 (884)
Q Consensus 479 d~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~~l~~~~~l~~~~~~~~~~-~~~~~~-~~l 556 (884)
..+.-+-..|.....+++..|.+++|+.+.=+.+..........+++|-..+++= .+-....+|.... .-++.. ..+
T Consensus 272 ErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW-YLKq~l~~~~~~~~~W~p~~~~~L 350 (1265)
T KOG1920|consen 272 ERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW-YLKQELQFSQKALLMWDPVTEKTL 350 (1265)
T ss_pred ecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE-EEEEEEeccccccccccCCCceeE
Confidence 8766554455444444544488999985432222222223334588887642210 1222344554333 223333 346
Q ss_pred EEEEcCCeEEEEEEEEec
Q 002753 557 LVTYRPFDVHIFHVKLFG 574 (884)
Q Consensus 557 lv~~~~~~i~i~~~~~~~ 574 (884)
.|.+.+|...++++.-..
T Consensus 351 ~v~~~sG~~~v~~~~~~t 368 (1265)
T KOG1920|consen 351 HVLRESGQRLVRDFAWTT 368 (1265)
T ss_pred EEEecCCcEEEEEEEEee
Confidence 666678899888876443
No 304
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.16 E-value=0.0025 Score=64.78 Aligned_cols=264 Identities=13% Similarity=0.079 Sum_probs=130.0
Q ss_pred hhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecCceee-----cCCCCCCCceeeeeeeeeeccccccccceeEEEE
Q 002753 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-----IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI 138 (884)
Q Consensus 64 l~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~i 138 (884)
..+...+++|.|-.-|.+||+|...|.+.+|.-+....--+ ++++..+=-.+.++ ..+++ ...+.-+
T Consensus 23 ~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSl--eieEK------in~I~w~ 94 (460)
T COG5170 23 STEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSL--EIEEK------INAIEWF 94 (460)
T ss_pred ccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhc--cHHHH------hhheeee
Confidence 34456678999999999999998889999997654432111 22332211111111 11111 1112222
Q ss_pred ee-cCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceee-cccCCCCcceecCCCccccccccCCCccEEEEE-
Q 002753 139 VS-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS-HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE- 215 (884)
Q Consensus 139 ~~-~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~- 215 (884)
.. .+..+++.+.+.++.+|..-.... +.+ +...+... .++.++.+.+..+. ..+-..+...+++..
T Consensus 95 ~~t~r~hFLlstNdktiKlWKiyeknl-----k~v--a~nnls~~~~~~~~g~~~s~~~l----~lprls~hd~iiaa~p 163 (460)
T COG5170 95 DDTGRNHFLLSTNDKTIKLWKIYEKNL-----KVV--AENNLSDSFHSPMGGPLTSTKEL----LLPRLSEHDEIIAAKP 163 (460)
T ss_pred cCCCcceEEEecCCceeeeeeeecccc-----hhh--hccccccccccccCCCcCCHHHh----hcccccccceEEEecc
Confidence 22 246788889999998865422110 000 00001100 00111111000000 000001111111111
Q ss_pred ---E---cCCcceEEEEEcCCcEEEEeecCCccceeeecccccc------cCC-----CCcEE-EEEcCCC-CEEEEEec
Q 002753 216 ---L---CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGS-----GDAVC-ASIAPEQ-QILAVGTR 276 (884)
Q Consensus 216 ---~---~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~------~~h-----~~~v~-va~sp~~-~~la~g~~ 276 (884)
| ++.....+.+.+|.+.++ ++++-.+.+|+......- ..| ...+. ..|+|.- ..+.-.+.
T Consensus 164 ~rvyaNaH~yhiNSiS~NsD~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 164 CRVYANAHPYHINSISFNSDKETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred ceeccccceeEeeeeeecCchheee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 1 011113344567777666 456777888876533210 112 12344 7788864 45556677
Q ss_pred CCeEEEEEccCCCcc-----eE--EEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccC-CeeEEEeccc
Q 002753 277 RGVVELYDLAESASL-----IR--TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQI 348 (884)
Q Consensus 277 dg~v~lw~~~~~~~~-----~~--~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~-~~l~~tl~~~ 348 (884)
.|+|++-|++...-+ +. ++.+.+...-.+-...|..+.|+++|+++++-+. .++++||+.- ..++.|+.-|
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 899999998741111 11 1111110001123456889999999999998776 8999999964 3455565443
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.011 Score=68.06 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=110.7
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 002753 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (884)
Q Consensus 261 ~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~ 340 (884)
|+++ .++.+|.|+.+|.|++++.+. .. .+... |... ..+|.++|+|+.||++.|-++++.+
T Consensus 44 ~~av--~~~~~~~GtH~g~v~~~~~~~--~~-~~~~~--------~s~~------~~~Gey~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 44 CCAV--HDKFFALGTHRGAVYLTTCQG--NP-KTNFD--------HSSS------ILEGEYVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred HHHh--hcceeeeccccceEEEEecCC--cc-ccccc--------cccc------ccCCceEEEecCCCcEEEeeccCCc
Confidence 4555 467899999999999988764 22 32222 4333 5689999999999999999999988
Q ss_pred eEEEeccccccceeeeeecCCCC-CCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCcee--e
Q 002753 341 LMSTIRQISLSSISSPIVKPNQD-CKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYA--R 417 (884)
Q Consensus 341 l~~tl~~~~~~~v~s~~~s~~~~-~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~--w 417 (884)
..+++.-+ ..+.+++++|+-. ..-..++ +|+..| +.+ .
T Consensus 105 ~~~~~df~--rpiksial~Pd~~~~~sk~fv------------------------------------~GG~ag-lvL~er 145 (846)
T KOG2066|consen 105 EITQYDFK--RPIKSIALHPDFSRQQSKQFV------------------------------------SGGMAG-LVLSER 145 (846)
T ss_pred cceeEecC--CcceeEEeccchhhhhhhhee------------------------------------ecCcce-EEEehh
Confidence 77776543 5688888888721 0001122 222111 000 0
Q ss_pred eeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCcEEEecCcccee--
Q 002753 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQ-- 495 (884)
Q Consensus 418 ~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~iiwd~~s~~w~~f~~~~~e~-- 495 (884)
..+...+ +.....-.++|.++.| .|.++|=++.+|+-+||+.+++--. +.....
T Consensus 146 ~wlgnk~--------------------~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~--~i~~p~~~ 201 (846)
T KOG2066|consen 146 NWLGNKD--------------------SVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLT--NIPPPSQS 201 (846)
T ss_pred hhhcCcc--------------------ceeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccceee--ccCCCCCC
Confidence 0111111 1123344579999999 5899999999998899999886332 222111
Q ss_pred ---eeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 002753 496 ---KIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 496 ---~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~ 528 (884)
+..-..+.|..+..++-+.. +.+++.+.
T Consensus 202 ~R~e~fpphl~W~~~~~LVIGW~-----d~v~i~~I 232 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDEDRLVIGWG-----DSVKICSI 232 (846)
T ss_pred CCcccCCCceEecCCCeEEEecC-----CeEEEEEE
Confidence 11122688976555444343 44555543
No 306
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.027 Score=59.76 Aligned_cols=76 Identities=13% Similarity=0.292 Sum_probs=60.9
Q ss_pred cCCCCcEE-EEEcCCCC-EEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCC-EEEEEEcCCc
Q 002753 254 LGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRG 330 (884)
Q Consensus 254 ~~h~~~v~-va~sp~~~-~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~-~Lasg~~dg~ 330 (884)
.++...+. ++|||..+ ++..++.+.+|+|.|+.+ ...+..... + ..+++++|.-|.. ++-.|-.+|.
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a--------~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIA--------Y-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheec--------c-CCceeeeeccCCcceeEEeccCce
Confidence 66778888 99999876 888999999999999987 444444444 4 7899999987654 6677778899
Q ss_pred EEEEeccCC
Q 002753 331 LTVWSVSGC 339 (884)
Q Consensus 331 v~vW~~~~~ 339 (884)
|.|+|+...
T Consensus 260 VlvyD~R~~ 268 (463)
T KOG1645|consen 260 VLVYDMRQP 268 (463)
T ss_pred EEEEEccCC
Confidence 999999643
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.08 E-value=0.0012 Score=65.77 Aligned_cols=152 Identities=15% Similarity=0.077 Sum_probs=87.8
Q ss_pred CCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe-eEEEeccccccceeeeeecCCCCCCccceeecc--------eeE
Q 002753 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--------SMM 376 (884)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~-l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~--------~i~ 376 (884)
|+++-.+=+.+--++.+++++.||.+.+.+...-. +...+...+.+..+.... ..+ +.+.++. ...
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~-~~~----~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKIC-RHG----NSILSGGCGNWNAQDNFY 162 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccccccccee-ecc----cEEecCCcceEeecccee
Confidence 45444444445567789999999999999986521 111111110111111001 111 2232221 333
Q ss_pred EEecCCceEEEEecCCcceEE--EEee--cceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecc-cccccC
Q 002753 377 QWDEYGYRLYAIEEGSSERVL--IFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQ 451 (884)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~--~~~~--~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p-~~~~~~ 451 (884)
+|+.+--+.+.........|. +-.+ ...++.|+.|+.+.+|+..+... | ..|+.|
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------------p~S~l~ah 222 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------------PVSLLKAH 222 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------------hHHHHHHh
Confidence 444333222222111122232 2223 44667788888888998777643 5 456789
Q ss_pred CCceEEEEEccC-CCEEEEEeCCceE-EEEccC
Q 002753 452 NWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQ 482 (884)
Q Consensus 452 ~~~I~~va~S~d-G~~lavag~dg~i-iwd~~s 482 (884)
..+|+.+-|.|. +..|.+++.||.+ +||-.+
T Consensus 223 k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 223 KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999985 8899999999999 999876
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.054 Score=62.91 Aligned_cols=137 Identities=19% Similarity=0.290 Sum_probs=84.3
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCE-EEEEEcCCcEEEEe
Q 002753 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA-FAVGWKSRGLTVWS 335 (884)
Q Consensus 258 ~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~-Lasg~~dg~v~vW~ 335 (884)
.+++ +++|.+-+.+|+|-.||.|..+.-+- .+.. +.+..++..-.++|+.+++..||+. +.++.. ..|.+++
T Consensus 126 ~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi----~RDr-gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~ 199 (933)
T KOG2114|consen 126 SPASSLAVSEDLKTIVCGFTNGLVICYKGDI----LRDR-GSRQDYSHRGKEPITGLALRSDGKSVLFVATT-EQVMLYS 199 (933)
T ss_pred CcceEEEEEccccEEEEEecCcEEEEEcCcc----hhcc-ccceeeeccCCCCceeeEEecCCceeEEEEec-ceeEEEE
Confidence 3455 89999999999999999999876432 1110 0011112124679999999999987 444444 6899999
Q ss_pred ccCCee-EEEeccccccceeeeeecCCCCCCccceeecc-eeEEEecCCceEEEEec-CCcceEEEEeecce
Q 002753 336 VSGCRL-MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE-GSSERVLIFSFGKC 404 (884)
Q Consensus 336 ~~~~~l-~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~~-~~~~~v~~~~~~~~ 404 (884)
+.|+.. .+.+..+ ..+.++..+++.. .+.+..++ -+-+++..+...-.+.. |+.-.+..++++-.
T Consensus 200 l~gr~p~~~~ld~~-G~~lnCss~~~~t---~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~ 267 (933)
T KOG2114|consen 200 LSGRTPSLKVLDNN-GISLNCSSFSDGT---YQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLL 267 (933)
T ss_pred ecCCCcceeeeccC-CccceeeecCCCC---ccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEE
Confidence 987662 3445444 3456666666553 13444444 56666666544433443 66655566665443
No 309
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.05 E-value=0.019 Score=58.70 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=53.2
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccC-----CCCCCCCcCe---EEEEECCCCCEEEEEEcC
Q 002753 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW-----GYSMDDTGPV---SCIAWTPDNSAFAVGWKS 328 (884)
Q Consensus 258 ~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~-----~~~~~h~~~V---~~l~~spdg~~Lasg~~d 328 (884)
..+. +.|+++|++|++-. =-+|++||++....++.++..+.- .... ....| ..+.||-|.+.+.+|+..
T Consensus 281 sSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~Y-EnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 281 SSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVY-ENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred hhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhh-hccceeeeEEEEecCCcccccccccc
Confidence 3455 89999999998743 369999999875667776644210 0000 12223 458899999999999998
Q ss_pred CcEEEEec
Q 002753 329 RGLTVWSV 336 (884)
Q Consensus 329 g~v~vW~~ 336 (884)
+..-++-+
T Consensus 359 NNfgiyp~ 366 (460)
T COG5170 359 NNFGIYPT 366 (460)
T ss_pred cceeeecc
Confidence 87777764
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.0022 Score=66.36 Aligned_cols=116 Identities=9% Similarity=0.093 Sum_probs=82.0
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEccCC----CcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEec
Q 002753 262 ASIAPEQQILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 262 va~sp~~~~la~g~~dg~v~lw~~~~~----~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~~ 336 (884)
..|.-.+.++..|+.+|.|..+|++.. +.+...+. |...|+++.--. ++++|.+.+.+|+|++||.
T Consensus 258 lQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly---------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 258 LQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY---------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred HHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE---------cCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 667777899999999999999999862 11222222 788899998777 8899999999999999999
Q ss_pred cCCee---EEEeccccccceeeeeecCCCC-CCccceeecc---eeEEEecCCceEEEEec
Q 002753 337 SGCRL---MSTIRQISLSSISSPIVKPNQD-CKYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (884)
Q Consensus 337 ~~~~l---~~tl~~~~~~~v~s~~~s~~~~-~~~~~l~sg~---~i~~W~~~~~~l~~~~~ 390 (884)
.--++ +.+..+| |+..+.-|.+- .....++++. -.++|....++++.+..
T Consensus 329 R~~K~~~~V~qYeGH----vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 329 RATKCKKSVMQYEGH----VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhhhcccceeeeecc----cccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 75555 7788887 33333333221 1113344443 67889988888877653
No 311
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0067 Score=66.11 Aligned_cols=174 Identities=11% Similarity=0.066 Sum_probs=111.4
Q ss_pred cccceeEEEEe-ecC-CeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccC
Q 002753 129 AEKGLSVSNIV-SDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206 (884)
Q Consensus 129 ~~~~~~v~~i~-~~~-~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~ 206 (884)
.++...++++. .++ +.++.+++|.++..|+...+..+..+ . ........
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t-----------s------------------aCQfTY~a 782 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT-----------S------------------ACQFTYQA 782 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc-----------c------------------eeeeEhhh
Confidence 34555555553 233 56788899999999877655432110 0 00012234
Q ss_pred CCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc------cCCCCcEE--EEEcCCCC-EEEEEecC
Q 002753 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAVC--ASIAPEQQ-ILAVGTRR 277 (884)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~------~~h~~~v~--va~sp~~~-~la~g~~d 277 (884)
|+..|.++.| ..|-+.++ +.|+.+.+||...+..+ ..|..... +--|-+.. ++|.++..
T Consensus 783 Hkk~i~~igf----------L~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsae 850 (1034)
T KOG4190|consen 783 HKKPIHDIGF----------LADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAE 850 (1034)
T ss_pred ccCcccceee----------eeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccch
Confidence 5666766664 56666665 56788899997655433 12322222 22232444 44555788
Q ss_pred CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 002753 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (884)
Q Consensus 278 g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~ 347 (884)
.+|+++|.+. .+....++... .++..+-+++++..|.|+.+|+|-.+|.+.+-|..+|+.+.+.+.
T Consensus 851 STVKl~DaRs-ce~~~E~kVcn---a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 851 STVKLFDARS-CEWTCELKVCN---APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred hhheeeeccc-ccceeeEEecc---CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 9999999987 66655555421 122456799999999999999999999999999999988776654
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.98 E-value=0.0018 Score=64.48 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=59.4
Q ss_pred cEE-EEEcC-CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEcCCcEEEEe
Q 002753 259 AVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWS 335 (884)
Q Consensus 259 ~v~-va~sp-~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~dg~v~vW~ 335 (884)
++. ++-+| +..++++|+.||.+-+||++...-....++. |+.+++.+-|.| ++..|.++++||.+.-||
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a--------hk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA--------HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH--------hhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 354 66677 4678899999999999999873233334555 999999999999 789999999999999999
Q ss_pred ccCC
Q 002753 336 VSGC 339 (884)
Q Consensus 336 ~~~~ 339 (884)
..+.
T Consensus 253 as~~ 256 (319)
T KOG4714|consen 253 ASTT 256 (319)
T ss_pred CCCc
Confidence 8874
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.97 E-value=0.17 Score=61.33 Aligned_cols=213 Identities=20% Similarity=0.281 Sum_probs=117.8
Q ss_pred ccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccccCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccC-
Q 002753 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE- 287 (884)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~- 287 (884)
..|+++.|-...+-.++++..|.++++..... .|.... .-..+..+++||||++++|..+.++++.+=+-+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~---~~eivg----~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETL---ELEIVG----NVDNGISAASWSPDEELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccc---ceeeee----eccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence 56899999888888888899999888733222 222111 1112344599999999999999888877622110
Q ss_pred --CCcce-------------------EEEeecc---CCC------C--C---CCCcCeEEEEECCCCCEEEEEE-----c
Q 002753 288 --SASLI-------------------RTVSLYD---WGY------S--M---DDTGPVSCIAWTPDNSAFAVGW-----K 327 (884)
Q Consensus 288 --~~~~~-------------------~~l~~~~---~~~------~--~---~h~~~V~~l~~spdg~~Lasg~-----~ 327 (884)
..+.+ ..++++. ... . . .+.. =++|+|--||.++|+.+ .
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDH-KTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccC-CceEEEccCCcEEEEEEEeccCC
Confidence 00000 1122110 000 0 0 0111 24599999999999843 2
Q ss_pred CCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecC--CcceEEEEeeccee
Q 002753 328 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG--SSERVLIFSFGKCC 405 (884)
Q Consensus 328 dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~--~~~~v~~~~~~~~~ 405 (884)
.+.++|||-.|. +-.+- ++...-.....|.+. |.++.+.+. .++.|.-|....
T Consensus 221 ~RkirV~drEg~-Lns~s---------------------e~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErNG-- 275 (1265)
T KOG1920|consen 221 TRKIRVYDREGA-LNSTS---------------------EPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERNG-- 275 (1265)
T ss_pred ceeEEEecccch-hhccc---------------------CcccccccceeecCC-CCeEeeeeecCCCCcEEEEecCC--
Confidence 278999998843 21110 111111255678774 333333321 122222222100
Q ss_pred ecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEE---EeCCceE-EEEcc
Q 002753 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAV---AGLHGLI-LYDIR 481 (884)
Q Consensus 406 ~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lav---ag~dg~i-iwd~~ 481 (884)
+..+. ..+| +.....++..++|+.++..||+ ......+ +|-+.
T Consensus 276 -------------L~hg~------------------f~l~--~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 276 -------------LRHGE------------------FVLP--FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred -------------ccccc------------------cccC--CcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 01110 0011 1122334889999999999999 6677768 99998
Q ss_pred CCcEEE
Q 002753 482 QKKWRV 487 (884)
Q Consensus 482 s~~w~~ 487 (884)
.-.|.+
T Consensus 323 NyhWYL 328 (1265)
T KOG1920|consen 323 NYHWYL 328 (1265)
T ss_pred CeEEEE
Confidence 888976
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.89 E-value=0.28 Score=51.71 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=46.0
Q ss_pred CCCceEEEEEec-CeEEEEE-cc-CeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEe-----cCcE
Q 002753 19 PSSQQIIYFKVN-NGLLLIA-SP-CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-----SSLY 90 (884)
Q Consensus 19 ~~~~~vv~fspd-g~lla~~-t~-~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t-----~~g~ 90 (884)
|.+-.-++.+|+ +..+|.+ -+ ....+||.. .+..+....-... .+ -+--.+|||||++|++.- ..|.
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~-~g~~~~~~~a~~g--RH--FyGHg~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCR-TGQLLQRLWAPPG--RH--FYGHGVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcC-CCceeeEEcCCCC--CE--EecCEEEcCCCCEEEEeccccCCCcEE
Confidence 344555777884 4445555 23 457888884 5555544322111 11 122478999999999954 4588
Q ss_pred EEEEEEEe
Q 002753 91 LHIFKVQI 98 (884)
Q Consensus 91 l~l~~l~~ 98 (884)
|-|||...
T Consensus 79 IgVyd~~~ 86 (305)
T PF07433_consen 79 IGVYDAAR 86 (305)
T ss_pred EEEEECcC
Confidence 99999973
No 315
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.83 E-value=0.27 Score=51.39 Aligned_cols=90 Identities=14% Similarity=0.264 Sum_probs=60.4
Q ss_pred EEEcCCCCEEE-EEecCCeEEEEEccCCCcce---EEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 002753 262 ASIAPEQQILA-VGTRRGVVELYDLAESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 262 va~sp~~~~la-~g~~dg~v~lw~~~~~~~~~---~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~ 337 (884)
++|+|+++.|. +-+..+.|..|+++..+..+ +.+.... .-.+....+++..+|++.++.+..+.|.+++..
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP-----GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S-----SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcC-----CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 89999998665 55677899999987533312 2221100 012346789999999999998888999999998
Q ss_pred CCeeEEEeccccccceeeeee
Q 002753 338 GCRLMSTIRQISLSSISSPIV 358 (884)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~ 358 (884)
+++...+.-. ....++++|
T Consensus 214 -G~~~~~i~~p-~~~~t~~~f 232 (246)
T PF08450_consen 214 -GKLLREIELP-VPRPTNCAF 232 (246)
T ss_dssp -SCEEEEEE-S-SSSEEEEEE
T ss_pred -ccEEEEEcCC-CCCEEEEEE
Confidence 4556655543 235667777
No 316
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.005 Score=68.87 Aligned_cols=94 Identities=19% Similarity=0.240 Sum_probs=70.8
Q ss_pred ccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccccCCCCcE-EEEEcCCCCEEEEEecCCeEEEEEccC
Q 002753 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (884)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~~h~~~v-~va~sp~~~~la~g~~dg~v~lw~~~~ 287 (884)
..+..++|+|.+..++..+.+|+++....+ --++|+...+. .+.+ +++|.|||++||+|-.||+|++.|+.+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~-----~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPG-----ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCC-----CccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 447889999999999999999999887666 45678776431 2344 699999999999999999999999988
Q ss_pred CCcceEEEeeccCCCCCCCCcCeEEEEECC
Q 002753 288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTP 317 (884)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp 317 (884)
+..+..... + -...|.++-|+|
T Consensus 94 -~~~l~~~~~-----s--~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 -GGRLVSFLF-----S--VETDISKGIWDR 115 (665)
T ss_pred -CCceecccc-----c--cccchheeeccc
Confidence 443332111 0 345677887863
No 317
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.77 E-value=0.41 Score=54.21 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=39.8
Q ss_pred cEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 002753 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 259 ~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~ 337 (884)
+..+++||+|+.+++ +.||.-.||.... .+... .|.-....|+++|+ +|+-...++|.++.-.
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~-~r~k~-------------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALA-WRNKA-------------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTT-TEEEE-------------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccC-Ccccc-------------cCceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 445999999999999 6788888887433 22211 23446788999555 6776667889997444
No 318
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.55 E-value=0.0062 Score=41.63 Aligned_cols=30 Identities=30% Similarity=0.691 Sum_probs=28.5
Q ss_pred CCcCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 002753 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (884)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~dg~v~vW~ 335 (884)
|...|.+++|+|++..+++++.|+.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 888999999999999999999999999996
No 319
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.056 Score=64.33 Aligned_cols=74 Identities=24% Similarity=0.378 Sum_probs=58.6
Q ss_pred CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 002753 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (884)
Q Consensus 267 ~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~ 346 (884)
.+.++|.|+..|.+...|+... .-....+. .-+++|++++|+.||+.++.|..+|.|.+||+..+...+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNE------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCC------ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 5678999999999999887651 11111111 147899999999999999999999999999999988888777
Q ss_pred cc
Q 002753 347 QI 348 (884)
Q Consensus 347 ~~ 348 (884)
.+
T Consensus 170 e~ 171 (1206)
T KOG2079|consen 170 EH 171 (1206)
T ss_pred ec
Confidence 65
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.30 E-value=2.7 Score=47.35 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=55.0
Q ss_pred CCCEEEEEeCCceE-EEEccCCc--EEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceEEE
Q 002753 463 DGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCR 539 (884)
Q Consensus 463 dG~~lavag~dg~i-iwd~~s~~--w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~~l~~~~~l~~ 539 (884)
++..+++++.+|.+ ..|..+|+ |+.-. . ... ........++.++++ +.+..|.+++.. +..++++
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~-~~~--~~~sp~v~~g~l~v~-----~~~G~l~~ld~~---tG~~~~~ 360 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSD-L-LHR--LLTAPVLYNGYLVVG-----DSEGYLHWINRE---DGRFVAQ 360 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccc-c-CCC--cccCCEEECCEEEEE-----eCCCEEEEEECC---CCCEEEE
Confidence 46677777888888 88888775 54210 0 001 112223346666665 223456666543 4567787
Q ss_pred EecCCccEEEE--ccCCEEEEEEcCCeEEEEE
Q 002753 540 KSLLAKPIVMD--VYEDYILVTYRPFDVHIFH 569 (884)
Q Consensus 540 ~~~~~~~~~~~--~~~~~llv~~~~~~i~i~~ 569 (884)
.++....+.-+ +.++.|+|.+.++.+..++
T Consensus 361 ~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 361 QKVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 77653322222 3567888888888877764
No 321
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.17 E-value=1.3 Score=49.02 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=46.7
Q ss_pred CceEEEEEecCeEEEEEccCeEEEEecCCceeEEEEEeeChHh-----------hhh-ccceeEEEEcCCccEEEEEec-
Q 002753 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSES-----------VQR-EGENLQAVWSPDTKLIAVVTS- 87 (884)
Q Consensus 21 ~~~vv~fspdg~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~s-----------l~~-~G~~~~v~wsPDg~~Lav~t~- 87 (884)
...-..+||||+.+|.+.++.|.+++.. ... ...+....+. -++ ++....+.|||||+.||...-
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~-~~~-~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLA-TGQ-ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESST-TSE-EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccceeecCCCeeEEEecCceEEEECC-CCC-eEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 3455789999999999999999999874 332 2222211100 122 566788999999999888654
Q ss_pred CcEEEEEEEE
Q 002753 88 SLYLHIFKVQ 97 (884)
Q Consensus 88 ~g~l~l~~l~ 97 (884)
+..+..+.+.
T Consensus 122 ~~~v~~~~~~ 131 (353)
T PF00930_consen 122 EREVPEYPLP 131 (353)
T ss_dssp -TTS-EEEEE
T ss_pred CcCCceEEee
Confidence 4456666653
No 322
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.17 E-value=0.083 Score=61.03 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=58.4
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 002753 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 260 v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~ 337 (884)
+.++|+|..-.||.|..-|.+.+|...+ ...++... .|+.+|..+.|||||..|.++..=|.+.+|...
T Consensus 63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~--~e~htv~~-------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLAQGWEMGVSDVQKTNT--TETHTVVE-------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhccChHHHHHhhccccceeEEEecCC--ceeeeecc-------CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3478999999999999999999999876 33333332 299999999999999999999999999999875
No 323
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.15 E-value=0.013 Score=60.84 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=69.6
Q ss_pred CcEEEEeecCCccceeeeccc---ccc----cCCCCcEE-EEEcC-CCCEEEEEecCCeEEEEEccCCCcc---eEEEee
Q 002753 230 GQLMSCSVSKKGLKLAEFIKI---DKE----LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASL---IRTVSL 297 (884)
Q Consensus 230 G~~~~~~~~d~~i~~w~~~~~---~~~----~~h~~~v~-va~sp-~~~~la~g~~dg~v~lw~~~~~~~~---~~~l~~ 297 (884)
+.+++.+...+.|-..|.... ..| .-|..+++ +..=. +++.|.+.+.+|+|++||.+. .++ +.+..+
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeG 342 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEG 342 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeec
Confidence 445555555555544444432 112 34666666 44333 456666668899999999986 555 556666
Q ss_pred ccCCCCCCCCcCeEE--EEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecc
Q 002753 298 YDWGYSMDDTGPVSC--IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (884)
Q Consensus 298 ~~~~~~~~h~~~V~~--l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~ 347 (884)
|...-.- +-..+....++++++|...++|++..+.+++++..
T Consensus 343 --------HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 343 --------HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred --------ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 5332111 22234566788899999999999999999999864
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.01 E-value=1.1 Score=51.67 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=71.9
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceE-EEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 002753 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (884)
Q Consensus 258 ~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~-~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~ 335 (884)
..+. -+++..++++|.|+.-|.+.+|+-.. +.... ...+ ..+.+..+..|++.+++|.|+..|-|.|+-
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~-~~~~~~~~~~--------~~~~~~~~~vs~~e~lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHT-GEMRKLKNEG--------ATGITCVRSVSSVEYLVAAGTASGRVSVFQ 104 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCc-hhhhcccccC--------ccceEEEEEecchhHhhhhhcCCceEEeeh
Confidence 3344 56677899999999999999999765 33222 2222 456677888999999999999988899888
Q ss_pred ccCCe-----eEEEeccccccceeeeeecCCCCCCccceeecc
Q 002753 336 VSGCR-----LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (884)
Q Consensus 336 ~~~~~-----l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~ 373 (884)
+..+. .+......+...|+++.|++++ ..+.+|.
T Consensus 105 l~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~----~k~ysGD 143 (726)
T KOG3621|consen 105 LNKELPRDLDYVTPCDKSHKCRVTALEWSKNG----MKLYSGD 143 (726)
T ss_pred hhccCCCcceeeccccccCCceEEEEEecccc----cEEeecC
Confidence 75432 1222222125678888888887 6666664
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.01 E-value=0.034 Score=62.40 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=53.0
Q ss_pred CCceEEEEEecCeEEEEE-ccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002753 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (884)
Q Consensus 20 ~~~~vv~fspdg~lla~~-t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~ 98 (884)
+..-+.++||+...|+.+ .|++|.+||..++... ..+.. + ..+.++|+|||..++|++..|.+.+||+.-
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~---~~ka~-----~-~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL---LAKAE-----F-IPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeee---eeeec-----c-cceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 345557788887766666 6899999999633222 22221 1 136899999999999999999999999976
Q ss_pred cC
Q 002753 99 TE 100 (884)
Q Consensus 99 ~~ 100 (884)
+.
T Consensus 331 sp 332 (545)
T PF11768_consen 331 SP 332 (545)
T ss_pred Cc
Confidence 54
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.99 E-value=0.03 Score=64.42 Aligned_cols=104 Identities=19% Similarity=0.291 Sum_probs=76.8
Q ss_pred EEEcCCCCEEEEEec----CCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 002753 262 ASIAPEQQILAVGTR----RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 262 va~sp~~~~la~g~~----dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~ 337 (884)
.+|+|...++|+++. .|.|.||- ++ +++-+... ..-.+++++|.|..-.||+||+-|.+.+|...
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dt-GEPqr~Vt---------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DT-GEPQRDVT---------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cC-CCCCcccc---------cceehhhhccChHHHHHhhccccceeEEEecC
Confidence 788888888888763 57888874 44 44322111 12235779999999999999999999999987
Q ss_pred CCeeEEEeccccccceeeeeecCCCCCCccceeecc---eeEEEecC
Q 002753 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (884)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~---~i~~W~~~ 381 (884)
..+ ..+....+...+..+.||++| ..++++. .+..|...
T Consensus 90 ~~e-~htv~~th~a~i~~l~wS~~G----~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 90 TTE-THTVVETHPAPIQGLDWSHDG----TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred Cce-eeeeccCCCCCceeEEecCCC----CeEEEcCCCceeEEEEee
Confidence 654 555555447889999999999 7777775 67788654
No 327
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.95 E-value=0.18 Score=44.57 Aligned_cols=93 Identities=17% Similarity=0.255 Sum_probs=57.0
Q ss_pred EcCCc-EEEEeecCCccceeeecccccc-cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCC
Q 002753 227 YSNGQ-LMSCSVSKKGLKLAEFIKIDKE-LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (884)
Q Consensus 227 s~dG~-~~~~~~~d~~i~~w~~~~~~~~-~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~ 304 (884)
..||+ -++++++|..+++++......- ..+...+.+.-... ..+|.|.++|+|-+|+-.. +..+ .+.
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR-iKS------- 79 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR-IKS------- 79 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee-ecc-------
Confidence 34443 6778899999998865532111 23334444443333 6799999999999997543 3222 222
Q ss_pred CCCcCeEEEEECC---CCC-EEEEEEcCCcEE
Q 002753 305 DDTGPVSCIAWTP---DNS-AFAVGWKSRGLT 332 (884)
Q Consensus 305 ~h~~~V~~l~~sp---dg~-~Lasg~~dg~v~ 332 (884)
+..+.++++.. ||. -|++|+.+|.|-
T Consensus 80 --K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 80 --KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 23366666543 443 799999988764
No 328
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.92 E-value=0.59 Score=51.76 Aligned_cols=220 Identities=16% Similarity=0.120 Sum_probs=101.6
Q ss_pred CCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeee
Q 002753 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 356 (884)
Q Consensus 277 dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~ 356 (884)
.+...+||+.+ +. ...+.. ..+.+....|||||+.+|-... +.|.+++..++.. ..+...+...+.
T Consensus 22 ~~~y~i~d~~~-~~-~~~l~~--------~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~-~~lT~dg~~~i~-- 87 (353)
T PF00930_consen 22 KGDYYIYDIET-GE-ITPLTP--------PPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQE-TQLTTDGEPGIY-- 87 (353)
T ss_dssp EEEEEEEETTT-TE-EEESS---------EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEE-EESES--TTTEE--
T ss_pred ceeEEEEecCC-Cc-eEECcC--------CccccccceeecCCCeeEEEec-CceEEEECCCCCe-EEeccccceeEE--
Confidence 46788999887 33 332222 2456888999999999998875 8999999877743 333222211111
Q ss_pred eecCCCCCC---ccceeecceeEEEecCCceEEEEecC-CcceEEEEee---c----------ceeecccCCCCceeeee
Q 002753 357 IVKPNQDCK---YEPLMSGTSMMQWDEYGYRLYAIEEG-SSERVLIFSF---G----------KCCLNRGVSGMTYARQV 419 (884)
Q Consensus 357 ~~s~~~~~~---~~~l~sg~~i~~W~~~~~~l~~~~~~-~~~~v~~~~~---~----------~~~~s~~~d~~~~~w~l 419 (884)
+|... .+.++.....+.|++++.++.....+ ..-+.+.+.. . ++-..|.....+.++.+
T Consensus 88 ----nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~ 163 (353)
T PF00930_consen 88 ----NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVV 163 (353)
T ss_dssp ----ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEE
T ss_pred ----cCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEE
Confidence 01000 01122233567788877766544322 1111111111 0 11123333444444333
Q ss_pred eecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEccCCCEEEEE--eCCc---eE-EEEccCCcEEEecCccc
Q 002753 420 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA--GLHG---LI-LYDIRQKKWRVFGDITQ 493 (884)
Q Consensus 420 ~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~dG~~lava--g~dg---~i-iwd~~s~~w~~f~~~~~ 493 (884)
.-...+. ..+..|........-+..+.|++|++.+++. +++. .+ ++|..+++-+....+..
T Consensus 164 ~~~~~~~-------------~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~ 230 (353)
T PF00930_consen 164 DLASGKT-------------TELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS 230 (353)
T ss_dssp ESSSTCC-------------CEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES
T ss_pred ECCCCcE-------------EEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC
Confidence 2221110 0122233333445568899999999944433 3433 23 77887776554322111
Q ss_pred eeeeEEE-EEEEe---CCEEEEEEEecCCCeEEEEEeeCC
Q 002753 494 EQKIQSK-GLLWL---GKIIVVCNYIDSSNTYELLFYPRY 529 (884)
Q Consensus 494 e~~~~v~-~~~W~---~~~lv~~~~~~~~~~~elr~y~~~ 529 (884)
+.=+... ...+. ++.++.. .+.++..+|-+++..
T Consensus 231 ~~Wv~~~~~~~~~~~~~~~~l~~--s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 231 DGWVDVYDPPHFLGPDGNEFLWI--SERDGYRHLYLYDLD 268 (353)
T ss_dssp SSSSSSSSEEEE-TTTSSEEEEE--EETTSSEEEEEEETT
T ss_pred CcceeeecccccccCCCCEEEEE--EEcCCCcEEEEEccc
Confidence 1101111 23332 3344443 225566677777653
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.83 E-value=0.012 Score=67.86 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=49.7
Q ss_pred CCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 002753 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 305 ~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
.|+..-+|++||-+.++|++|...|.|+++++++|....+...| .+.++.+.-+.++
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dg 1155 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDG 1155 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCc
Confidence 38888999999999999999999999999999999888777777 6778877766666
No 330
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.81 E-value=0.68 Score=47.78 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=44.9
Q ss_pred CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 002753 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (884)
Q Consensus 267 ~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl 345 (884)
++..+.+++.++.+..||..+ ++.+-..... +++.... ..++..+.++..|+.+..+|..+++...+.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~~---------~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKT-GKVLWRFDLP---------GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTT-SEEEEEEECS---------SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCC-CCEEEEeecc---------cccccee-eecccccccccceeeeEecccCCcceeeee
Confidence 556666778999999999988 6655544431 1111111 234556666778889999998888777663
No 331
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.066 Score=57.69 Aligned_cols=202 Identities=12% Similarity=0.100 Sum_probs=118.7
Q ss_pred cCCcEEEEeecCCccceeeecc--cccc----cCCCCcEE-EEEcCCCCEEEEEec-CCeEEEEEccCCCcceEEEeecc
Q 002753 228 SNGQLMSCSVSKKGLKLAEFIK--IDKE----LGSGDAVC-ASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYD 299 (884)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~--~~~~----~~h~~~v~-va~sp~~~~la~g~~-dg~v~lw~~~~~~~~~~~l~~~~ 299 (884)
.-.+++..++-|+..+.|.-.. +... ..|...+. ++.|-++.+.++++. |..+++||+.+ ...+..++...
T Consensus 18 tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn-~DminmiKL~~ 96 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN-FDMINMIKLVD 96 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec-cchhhhccccc
Confidence 3456677778888888885432 1111 33444454 778889999999887 99999999987 44443333321
Q ss_pred CCCCCCCCcCeEEEEECC-CC-CEEEEE-EcCCcEEEEeccCCe-eEEEeccccccceeeeeecCCCCCCccceeecc--
Q 002753 300 WGYSMDDTGPVSCIAWTP-DN-SAFAVG-WKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (884)
Q Consensus 300 ~~~~~~h~~~V~~l~~sp-dg-~~Lasg-~~dg~v~vW~~~~~~-l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~-- 373 (884)
-.+.+..+ .+| |- ..+|++ .+++.+.|+|-++.. ...-+.+.+.++|..+.+.+.+ ....|..
T Consensus 97 ------lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~----Ds~vSiD~~ 165 (558)
T KOG0882|consen 97 ------LPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG----DSAVSIDIS 165 (558)
T ss_pred ------CCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc----cceeecccc
Confidence 12322222 122 11 144444 355889999987654 3444455447788888888776 3333332
Q ss_pred -eeEEEecCC-ceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccC
Q 002753 374 -SMMQWDEYG-YRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (884)
Q Consensus 374 -~i~~W~~~~-~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~ 451 (884)
.+-.|.+.+ ++.... .+ .|.+....+ ...+...
T Consensus 166 gmVEyWs~e~~~qfPr~------~l-------------------~~~~K~eTd--------------------Ly~f~K~ 200 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRT------NL-------------------NFELKHETD--------------------LYGFPKA 200 (558)
T ss_pred ceeEeecCCCcccCccc------cc-------------------cccccccch--------------------hhccccc
Confidence 566777653 111000 00 111211111 0011112
Q ss_pred CCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEE
Q 002753 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (884)
Q Consensus 452 ~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~ 486 (884)
.....++.|||+|..+++-+.|..+ +++..+|+-.
T Consensus 201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred ccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 2335689999999999999999999 9999998743
No 332
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.76 E-value=0.094 Score=61.31 Aligned_cols=176 Identities=16% Similarity=0.094 Sum_probs=106.7
Q ss_pred CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 002753 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (884)
Q Consensus 267 ~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~ 346 (884)
++..+..|+--..+..+|+.+ .+..+.... ..+.|+-++ .+++.+.+|...|+|.+=|..+.+.++++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v--------~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNT-EKETRTTNV--------SASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD 214 (1118)
T ss_pred CCcceeecchhhheeeeeccc-ceeeeeeec--------cCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee
Confidence 344455565555666778776 454544443 233466666 468899999999999999999999999998
Q ss_pred cccccceeeeeecCCCCCCccceeecc------------eeEEEecCCceEEEEecCCc-ceEEEEee--cceeecccCC
Q 002753 347 QISLSSISSPIVKPNQDCKYEPLMSGT------------SMMQWDEYGYRLYAIEEGSS-ERVLIFSF--GKCCLNRGVS 411 (884)
Q Consensus 347 ~~~~~~v~s~~~s~~~~~~~~~l~sg~------------~i~~W~~~~~~l~~~~~~~~-~~v~~~~~--~~~~~s~~~d 411 (884)
.| .+.++.... .| +.+++.+ -+++||.+..+.+.-..-+- ..+..|-+ ...++..+..
T Consensus 215 aH-s~siSDfDv--~G----NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~s 287 (1118)
T KOG1275|consen 215 AH-SGSISDFDV--QG----NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQS 287 (1118)
T ss_pred cc-ccceeeeec--cC----CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecc
Confidence 88 666665443 33 4444433 35677776655443322111 12233333 3334444444
Q ss_pred CCceeeeeeecCCeEEEEecCCCCceeEEEeeccc---ccccCCCc-eEEEEEccCCCEEEEEeCCceE-EEEc
Q 002753 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV---SYISQNWP-VQHVAASKDGMFLAVAGLHGLI-LYDI 480 (884)
Q Consensus 412 ~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~---~~~~~~~~-I~~va~S~dG~~lavag~dg~i-iwd~ 480 (884)
|....-+-..-.+ |. .+..-+++ +....+|++|+.+|.|..+|.+ +|.-
T Consensus 288 Gq~q~vd~~~lsN--------------------P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 288 GQFQFVDTATLSN--------------------PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cceeeccccccCC--------------------CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 4443322111111 10 11222333 8899999999999999999999 9973
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=1.2 Score=52.47 Aligned_cols=80 Identities=10% Similarity=0.178 Sum_probs=54.3
Q ss_pred CCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcc-eEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEE
Q 002753 257 GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (884)
Q Consensus 257 ~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~-~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW 334 (884)
..+++ +++..+++.+.....-..|.+|.+.. ..+ ...+.. |..++.|.++++-...+++|+. ..+.++
T Consensus 171 ~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~--------~G~~lnCss~~~~t~qfIca~~-e~l~fY 240 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDN--------NGISLNCSSFSDGTYQFICAGS-EFLYFY 240 (933)
T ss_pred CCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeecc--------CCccceeeecCCCCccEEEecC-ceEEEE
Confidence 35666 89988888744444456799999975 222 223444 7788999999876664555544 589999
Q ss_pred eccCCeeEEEec
Q 002753 335 SVSGCRLMSTIR 346 (884)
Q Consensus 335 ~~~~~~l~~tl~ 346 (884)
+..+.....++.
T Consensus 241 ~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 241 DSDGRGPCFAFE 252 (933)
T ss_pred cCCCcceeeeec
Confidence 998776555554
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.4 Score=55.73 Aligned_cols=61 Identities=23% Similarity=0.234 Sum_probs=47.3
Q ss_pred cCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCC-----CCEEEEEEcCCcEEEEec
Q 002753 265 APEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-----NSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 265 sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spd-----g~~Lasg~~dg~v~vW~~ 336 (884)
+.+|.++|+|+.||+|.|-.+.+ .+...+.. -..++.+++++|| .+.+++|+.-| +-+..-
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~-~~~~~~~d---------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er 145 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFT-DDEITQYD---------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSER 145 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccC-CccceeEe---------cCCcceeEEeccchhhhhhhheeecCcce-EEEehh
Confidence 56899999999999999988877 44444333 2568999999998 56788888866 766653
No 335
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.55 E-value=1.2 Score=45.85 Aligned_cols=212 Identities=17% Similarity=0.183 Sum_probs=108.5
Q ss_pred EEcCCCCEEEEEecC-----CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 002753 263 SIAPEQQILAVGTRR-----GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 263 a~sp~~~~la~g~~d-----g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~ 337 (884)
.|||||++|-..-.| |.|-|||.+..-+.+-.+.. |.-.-..+.|.+||+.++++. |+|..---+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t--------~GiGpHev~lm~DGrtlvvan--GGIethpdf 189 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST--------HGIGPHEVTLMADGRTLVVAN--GGIETHPDF 189 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc--------CCcCcceeEEecCCcEEEEeC--Cceeccccc
Confidence 599999988764332 67999998763333444444 544447799999999999874 677776444
Q ss_pred CCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCceee
Q 002753 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR 417 (884)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w 417 (884)
|...+.- ... .| +..+-+..+++++....- ......++. +. +.-+.|+++ |
T Consensus 190 gR~~lNl-dsM----------eP-------------Slvlld~atG~liekh~L-p~~l~~lSi-RH-ld~g~dgtv--w 240 (366)
T COG3490 190 GRTELNL-DSM----------EP-------------SLVLLDAATGNLIEKHTL-PASLRQLSI-RH-LDIGRDGTV--W 240 (366)
T ss_pred Cccccch-hhc----------Cc-------------cEEEEeccccchhhhccC-chhhhhcce-ee-eeeCCCCcE--E
Confidence 4432210 000 00 112223233333321100 000000110 00 111223332 2
Q ss_pred eeeecCCeEEEEecCCCCcee--------EEEeeccc-ccccCCCceEEEEEccCCCEEEEEeCCceE--EEEccCCcEE
Q 002753 418 QVIYGEDRLLVVQSEDTDELK--------ILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQKKWR 486 (884)
Q Consensus 418 ~l~~~~~~~~i~~~~~~~~~~--------w~~~~~p~-~~~~~~~~I~~va~S~dG~~lavag~dg~i--iwd~~s~~w~ 486 (884)
--.| +.-..+|.+.+. .+.+.+|. +...-+..|-++|.+.+...++..+..|.. +||..||...
T Consensus 241 fgcQ-----y~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 241 FGCQ-----YRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred EEEE-----eeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence 1111 000112222211 12233343 333344567789999888888888888876 9999999754
Q ss_pred EecCccceeee-EEEEEEEeCCEEEEEEEecCCCeEEEEEeeCC
Q 002753 487 VFGDITQEQKI-QSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (884)
Q Consensus 487 ~f~~~~~e~~~-~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~ 529 (884)
.- ..+ .+-|+.--++..++. +.+.++++|++.
T Consensus 316 ~~------a~l~daaGva~~~~gf~vs-----sg~G~~~~~s~~ 348 (366)
T COG3490 316 SE------AALPDAAGVAAAKGGFAVS-----SGQGRIIFYSRA 348 (366)
T ss_pred ec------ccccccccceeccCceEEe-----cCCceEEecccc
Confidence 31 111 134555555544443 466789999875
No 336
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.50 E-value=1.7 Score=49.01 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=40.1
Q ss_pred CCEEEEEecCCeEEEEEccCCCcceEEEeecc-CCCCCCCCcCeEEEEECC--CCCEEEEEEcCCcEEEEeccCCeeEEE
Q 002753 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMST 344 (884)
Q Consensus 268 ~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~-~~~~~~h~~~V~~l~~sp--dg~~Lasg~~dg~v~vW~~~~~~l~~t 344 (884)
+..+.+++.+|.+.-+|.++ ++.+-...... .+......+.. +.-+| ++..+..++.+|.+.-+|..+++...+
T Consensus 69 ~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADT-GKEIWSVDLSEKDGWFSKNKSAL--LSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCC-CcEeeEEcCCCcccccccccccc--cccccEEECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 44556666777777777776 44332222110 00000000000 01111 355667777889999999988877665
Q ss_pred ec
Q 002753 345 IR 346 (884)
Q Consensus 345 l~ 346 (884)
..
T Consensus 146 ~~ 147 (394)
T PRK11138 146 TK 147 (394)
T ss_pred cc
Confidence 54
No 337
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.23 E-value=4.1 Score=41.43 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=59.3
Q ss_pred CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEE-EEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 002753 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC-IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (884)
Q Consensus 267 ~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~-l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl 345 (884)
-|++++.|+.+|.+.+-+.++ ++....+.. .+.|.+ -...+||.++-.|+.|++...-|..+..++...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~---------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVI---------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ECCEEEEEEccCcEEEEEecc-hhheeeeee---------hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 377799999999999999988 655554443 223332 335689999999999999999999888877765
Q ss_pred ccccccceeeeeecC
Q 002753 346 RQISLSSISSPIVKP 360 (884)
Q Consensus 346 ~~~~~~~v~s~~~s~ 360 (884)
+-. .....+++..|
T Consensus 132 kcg-G~~f~sP~i~~ 145 (354)
T KOG4649|consen 132 KCG-GGTFVSPVIAP 145 (354)
T ss_pred ccC-CceeccceecC
Confidence 533 22344444444
No 338
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.18 E-value=4.7 Score=41.91 Aligned_cols=216 Identities=15% Similarity=0.157 Sum_probs=104.2
Q ss_pred CCcEEEEeecCCccceeeecccccc-cCCCCcEEEEEc-CCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCC
Q 002753 229 NGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVCASIA-PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (884)
Q Consensus 229 dG~~~~~~~~d~~i~~w~~~~~~~~-~~h~~~v~va~s-p~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h 306 (884)
+|+++++....+.+..++....... .....+..+++. ++++++++ ..++ +.++|..+ ++......... ....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~-~~~~-~~~~d~~~-g~~~~~~~~~~---~~~~ 84 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVA-DSGG-IAVVDPDT-GKVTVLADLPD---GGVP 84 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEE-ETTC-EEEEETTT-TEEEEEEEEET---TCSC
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEE-EcCc-eEEEecCC-CcEEEEeeccC---CCcc
Confidence 5666666555555555554443321 111224557787 67666555 4444 45558776 43333222210 0002
Q ss_pred CcCeEEEEECCCCCEEEEEEcC--------CcEEEEeccCCeeEEEeccccccceeeeeecCCCCCCcccee-ecc---e
Q 002753 307 TGPVSCIAWTPDNSAFAVGWKS--------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---S 374 (884)
Q Consensus 307 ~~~V~~l~~spdg~~Lasg~~d--------g~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~-sg~---~ 374 (884)
....+.+++.|+|++.++.... |.+..++.. ++......+ ...-+.++|+|++ ..+. +-+ .
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg----~~lyv~ds~~~~ 157 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDG----KTLYVADSFNGR 157 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTS----SEEEEEETTTTE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcc----hheeecccccce
Confidence 3457899999999988876644 345555655 332222222 3446778888887 4332 111 2
Q ss_pred eEEEecC--CceEEEEecCCcceE-EEEeecc-eeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEeeccccccc
Q 002753 375 MMQWDEY--GYRLYAIEEGSSERV-LIFSFGK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (884)
Q Consensus 375 i~~W~~~--~~~l~~~~~~~~~~v-~~~~~~~-~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~ 450 (884)
+..++.. +.++- ..++ ..+.... ..-....|..-++|....+..++.++..... ....+.+|.
T Consensus 158 i~~~~~~~~~~~~~------~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~---~~~~i~~p~---- 224 (246)
T PF08450_consen 158 IWRFDLDADGGELS------NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK---LLREIELPV---- 224 (246)
T ss_dssp EEEEEEETTTCCEE------EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC---EEEEEE-SS----
T ss_pred eEEEecccccccee------eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc---EEEEEcCCC----
Confidence 2222221 11110 0011 1111111 1111122333456777777777777765422 223444442
Q ss_pred CCCceEEEEE-ccCCCEEEEEeC
Q 002753 451 QNWPVQHVAA-SKDGMFLAVAGL 472 (884)
Q Consensus 451 ~~~~I~~va~-S~dG~~lavag~ 472 (884)
..+.+++| -+|++.|.+.+.
T Consensus 225 --~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 225 --PRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp --SSEEEEEEESTTSSEEEEEEB
T ss_pred --CCEEEEEEECCCCCEEEEEeC
Confidence 24788999 477777776653
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.06 E-value=4 Score=45.64 Aligned_cols=93 Identities=19% Similarity=0.144 Sum_probs=51.7
Q ss_pred eeEEEEcCCccEEEEEecCcEEEEEEEEecCcee---ecCCCC---------CCCceeeee--------eeeeecccccc
Q 002753 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI---QIGGKQ---------PSGLFFIKI--------SLVLNEQLPFA 129 (884)
Q Consensus 70 ~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~---~~~~~~---------~~~~~l~~~--------~~~~~~~~~~~ 129 (884)
+..+.|+++..-|||++..|.+.+|......... ..+... .....+.++ ...+.-...+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 5688999999999999999999999886543211 000000 000111111 11121122334
Q ss_pred ccceeEEEEeecC-CeEEEEecCCcEEEEecCCc
Q 002753 130 EKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGE 162 (884)
Q Consensus 130 ~~~~~v~~i~~~~-~~llv~~~~g~i~~~~w~~~ 162 (884)
...+.|+++...+ ..+++|..+|.+.+++..+.
T Consensus 84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP 117 (395)
T PF08596_consen 84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP 117 (395)
T ss_dssp --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT
T ss_pred ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC
Confidence 4567888887644 78889999999999887544
No 340
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.04 E-value=0.036 Score=37.58 Aligned_cols=33 Identities=42% Similarity=0.557 Sum_probs=29.2
Q ss_pred ccccCCCceEEEEEccCCCEEEEEeCCceE-EEE
Q 002753 447 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (884)
Q Consensus 447 ~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd 479 (884)
.+..|..+|.+++++++++.+++++.||.+ +|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455678899999999999999999999999 885
No 341
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.02 E-value=0.69 Score=54.49 Aligned_cols=67 Identities=19% Similarity=0.361 Sum_probs=48.8
Q ss_pred ccCCCEEEEEeCCce-----E-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 002753 461 SKDGMFLAVAGLHGL-----I-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 461 S~dG~~lavag~dg~-----i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~ 528 (884)
.-+|...|+||.||. + .||..+.+|.........+ ..+....+.+..+++|++........+.+|+.
T Consensus 473 ~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r-s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 473 VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR-SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc-ccccEEEECCEEEEEecccCccccceeEEcCC
Confidence 348899999998872 5 8999999999875443333 23334566777888888777777778888865
No 342
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.94 E-value=12 Score=45.25 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=22.4
Q ss_pred EEEEeecCCeEEEEecCCcEEEEecCCcc
Q 002753 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEF 163 (884)
Q Consensus 135 v~~i~~~~~~llv~~~~g~i~~~~w~~~~ 163 (884)
.+++..|..++++++.||.+..+..+...
T Consensus 588 ~~~~e~d~~yLlvalgdG~l~~fv~d~~t 616 (1096)
T KOG1897|consen 588 LTTFEGDIHYLLVALGDGALLYFVLDINT 616 (1096)
T ss_pred eEEeeccceEEEEEcCCceEEEEEEEccc
Confidence 35566678899999999998877776554
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.89 E-value=0.48 Score=53.45 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=40.7
Q ss_pred EEEecCeEEEEE---cc--CeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEe-cCcEEEEEEEEe
Q 002753 26 YFKVNNGLLLIA---SP--CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQI 98 (884)
Q Consensus 26 ~fspdg~lla~~---t~--~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t-~~g~l~l~~l~~ 98 (884)
+++|+++.++-. .. ..+.+++.+.... ...+...|.+..-.|||||+.||.+. .+|...||-+..
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~--------~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR--------PVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCcc--------ceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 577888876655 22 3578888852221 11122347777889999999887765 456666665543
No 344
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.79 E-value=0.6 Score=54.97 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=92.9
Q ss_pred EEEEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEE
Q 002753 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (884)
Q Consensus 135 v~~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i 214 (884)
++-+..++..+.+|...|.|.+.+-+ ..... ..+..|.+.|.++
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~--s~~~i----------------------------------ht~~aHs~siSDf 223 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPN--SFETI----------------------------------HTFDAHSGSISDF 223 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCC--cCcee----------------------------------eeeeccccceeee
Confidence 55556677888888889988664322 21110 1123344445443
Q ss_pred EEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccc---cCCCCcEEEEEcCC-CCEEEEEecCCeEEEEEccCCCc
Q 002753 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESAS 290 (884)
Q Consensus 215 ~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~~h~~~v~va~sp~-~~~la~g~~dg~v~lw~~~~~~~ 290 (884)
+ ...|..+.+.-.++..-. .-|.-+++||....+.+ .-+.++..+.|.|. -..+|+.+..|...+-|..+-..
T Consensus 224 D--v~GNlLitCG~S~R~~~l-~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 D--VQGNLLITCGYSMRRYNL-AMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred e--ccCCeEEEeecccccccc-cccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence 3 333433333333333211 12445678888765443 23344444788887 45788889999999977433122
Q ss_pred c-eEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 002753 291 L-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 291 ~-~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~ 336 (884)
+ ........ -...+..+.+|+.|..+|.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p------~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNP------NGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEcc------CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 22222200 2334899999999999999999999999984
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.77 E-value=5 Score=41.66 Aligned_cols=124 Identities=12% Similarity=0.137 Sum_probs=66.1
Q ss_pred cEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccccCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCC
Q 002753 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA 289 (884)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~ 289 (884)
.+..++|++..+.+.++......++--..++.+ .... .+.+..+.--+++-.++.++++--.++.+.+++++..+
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~v--lr~i---~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKV--LRRI---PLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT--E--EEEE---E-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCCCCE--EEEE---eCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 377888887766444444433333322233332 1111 11344555557787788777776668999999985533
Q ss_pred cceE--EEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 002753 290 SLIR--TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (884)
Q Consensus 290 ~~~~--~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~ 338 (884)
..+. .....+.+....+...+-.++|.|.++.|.++-+..-.+++.+.+
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 3222 222222333333556689999999988888888877788888765
No 346
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.76 E-value=7.3 Score=41.94 Aligned_cols=161 Identities=17% Similarity=0.138 Sum_probs=83.9
Q ss_pred ceEEEEEcCCcEEEEeec-CCccceeeecccccccCCCCcEE--EEEcCCCCEEEEEecCCeEEEEEccCCC-cceEEEe
Q 002753 221 RLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKELGSGDAVC--ASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVS 296 (884)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~-d~~i~~w~~~~~~~~~~h~~~v~--va~sp~~~~la~g~~dg~v~lw~~~~~~-~~~~~l~ 296 (884)
..|..++.||+++-+..+ ++.... ..+ +......+.+. -++...+..+..-+.+|.|+--|+.... +....++
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~--~~t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQ--KST-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEE--EEE-EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred CceEEEecCCceEEEEECCCCCEeE--eec-cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 467777888988877766 343321 111 11111122222 3455555555556889998887776521 1122222
Q ss_pred ecc---CCCCCCCCcCeEEEEECCCCCEEEEEEc--------CC--cEEEEeccCCeeEEEeccccccceeeeeecCCCC
Q 002753 297 LYD---WGYSMDDTGPVSCIAWTPDNSAFAVGWK--------SR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (884)
Q Consensus 297 ~~~---~~~~~~h~~~V~~l~~spdg~~Lasg~~--------dg--~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~ 363 (884)
... ....| ..|.-.-+++++....|.+.-. |+ .|-++|+.+++.+.++.-. ..+.++..+.++
T Consensus 225 ~~t~~e~~~~W-rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~- 300 (342)
T PF06433_consen 225 LLTDAEKADGW-RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDD- 300 (342)
T ss_dssp SS-HHHHHTTE-EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSS-
T ss_pred ccCccccccCc-CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCC-
Confidence 100 00011 1233455777765544443211 11 3677788999988888642 357788888876
Q ss_pred CCcccee---ec--ceeEEEecCCceEEEEecC
Q 002753 364 CKYEPLM---SG--TSMMQWDEYGYRLYAIEEG 391 (884)
Q Consensus 364 ~~~~~l~---sg--~~i~~W~~~~~~l~~~~~~ 391 (884)
.+++ ++ ..+.++|..++++.....+
T Consensus 301 ---~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 301 ---KPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ---S-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ---CcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 4433 22 2688899999988877643
No 347
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.72 E-value=0.026 Score=65.27 Aligned_cols=184 Identities=11% Similarity=0.081 Sum_probs=107.5
Q ss_pred CcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC-C-cEEEEe
Q 002753 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R-GLTVWS 335 (884)
Q Consensus 258 ~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d-g-~v~vW~ 335 (884)
..+|++|+-+.+.|++|+..|.|++|++.+ +........ |..+|+-+.-|.||..+.+.+.- . -..+|+
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~nc--------H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNC--------HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccc--------cccccccccccCCcceeeeeccccCchHHHhc
Confidence 356799999999999999999999999998 666555566 99999999999999977765442 2 467888
Q ss_pred ccC-CeeEEEeccccccceeeeeecCCCCCCccceeec-ceeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCC
Q 002753 336 VSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGM 413 (884)
Q Consensus 336 ~~~-~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg-~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~ 413 (884)
... +...+++.+. .++.|+... ....+-+. -...+++..++..+.+.-. .....+..+.+++-+++-+
T Consensus 1174 ~~s~~~~~Hsf~ed-----~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt---~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDED-----KAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLT---DTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred cccccCcccccccc-----ceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcC---cchhhhhhccccccCCCcc
Confidence 753 2234444432 344454331 11111111 2667888887765544211 1222233344455555544
Q ss_pred ceeeeeeecCCeEEEEecCCCCceeEEEeec--ccccccCCCceEEEEEccCCCEEEEEeCCceEEEEccC
Q 002753 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNL--PVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQ 482 (884)
Q Consensus 414 ~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~--p~~~~~~~~~I~~va~S~dG~~lavag~dg~iiwd~~s 482 (884)
..+|+ ...|..... ...+-.-+. --.-.|+|.|..+++-+. +||+.|
T Consensus 1244 LIlnd-----------------GvLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINSE----IwD~RT 1292 (1516)
T KOG1832|consen 1244 LILND-----------------GVLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINSE----IWDMRT 1292 (1516)
T ss_pred eEeeC-----------------ceeeeeccHHHHhhhhhhee-cccccccCCCceEEeech----hhhhHH
Confidence 43332 112322111 111111111 112468999999887653 799866
No 348
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.67 E-value=6 Score=40.59 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=39.7
Q ss_pred cCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 002753 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (884)
Q Consensus 276 ~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~ 346 (884)
.+|+|..||..+ ++.+-...... ...+.+ +. ..+++..+.+++.++.+..||..+++...+..
T Consensus 1 ~~g~l~~~d~~t-G~~~W~~~~~~-----~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 1 DDGTLSALDPRT-GKELWSYDLGP-----GIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp -TSEEEEEETTT-TEEEEEEECSS-----SCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred CCCEEEEEECCC-CCEEEEEECCC-----CCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence 368899999877 66554443210 012221 11 33366677777888999999998888766554
No 349
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.66 Score=50.35 Aligned_cols=126 Identities=10% Similarity=0.003 Sum_probs=83.9
Q ss_pred ceEEEEEcCC----cEEEEeecCCccceeeecccccc-----cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCc
Q 002753 221 RLLFVLYSNG----QLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS 290 (884)
Q Consensus 221 ~~~~~~s~dG----~~~~~~~~d~~i~~w~~~~~~~~-----~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~ 290 (884)
+...|++..| .+.+...+++.+.+.|.....+. .-|..++. +.+++.+..+.+....|.|.-|..+..-+
T Consensus 99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q 178 (558)
T KOG0882|consen 99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ 178 (558)
T ss_pred CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence 3456667777 34444445666666665433221 23667776 89999999999998899999999873111
Q ss_pred ceE-----EEeeccCCC-CCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 002753 291 LIR-----TVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (884)
Q Consensus 291 ~~~-----~l~~~~~~~-~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~ 346 (884)
..+ .++....-+ -+...+...++.|+|+|..+++-..|..|+++...+++++..+.
T Consensus 179 fPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 179 FPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred CccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 111 111100000 11235567899999999999999999999999999998876654
No 350
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.47 E-value=0.091 Score=38.77 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=30.1
Q ss_pred CcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 002753 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (884)
Q Consensus 307 ~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~ 340 (884)
...|.+++|+|...+||.|..||.|.++.+.+.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 4579999999999999999999999999985543
No 351
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.57 E-value=0.15 Score=37.72 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=26.5
Q ss_pred ceeEEEEcCCccEEEEEecCcEEEEEEEE
Q 002753 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (884)
Q Consensus 69 ~~~~v~wsPDg~~Lav~t~~g~l~l~~l~ 97 (884)
.+..++|+|....||+++.+|.|.+|++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 46789999999999999999999999983
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.19 E-value=8.1 Score=43.90 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=40.6
Q ss_pred eEEEEEecCeEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEE
Q 002753 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIF 94 (884)
Q Consensus 23 ~vv~fspdg~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~ 94 (884)
.-+.++|+|+++++.+++.-.|+... ... . ..+|.-.+.+|++. ..+|+....+.|.+|
T Consensus 36 ~~ls~npngr~v~V~g~geY~iyt~~-~~r-------~----k~~G~g~~~vw~~~-n~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVCGDGEYEIYTAL-AWR-------N----KAFGSGLSFVWSSR-NRYAVLESSSTIKIY 94 (443)
T ss_dssp SEEEE-TTSSEEEEEETTEEEEEETT-TTE-------E----EEEEE-SEEEE-TS-SEEEEE-TTS-EEEE
T ss_pred eeEEECCCCCEEEEEcCCEEEEEEcc-CCc-------c----cccCceeEEEEecC-ccEEEEECCCeEEEE
Confidence 44789999999999999998898863 211 1 12466789999994 557888878889987
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=92.58 E-value=6.2 Score=35.04 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=48.3
Q ss_pred cEE-EEEcCCC-CEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 002753 259 AVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 259 ~v~-va~sp~~-~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~ 336 (884)
++| +.|.-+| .-|.+|+.|..||+|+-+ ..+..+.. ++.|++++-... ..++-|-++|+|-+++-
T Consensus 4 al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e---------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 4 ALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE---------TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred EEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec---------ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 344 5555554 578899999999998743 45555554 667888887776 55888888899988875
Q ss_pred c
Q 002753 337 S 337 (884)
Q Consensus 337 ~ 337 (884)
.
T Consensus 71 ~ 71 (111)
T PF14783_consen 71 S 71 (111)
T ss_pred c
Confidence 3
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.31 E-value=17 Score=38.37 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=45.7
Q ss_pred CCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 002753 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (884)
Q Consensus 266 p~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~ 340 (884)
..++.|+.|+.+| +.+|+.....+..+..+ ..+|..+...|+-+.|++-++ +.+.++++..-.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----------~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~ 67 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----------LSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLE 67 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee----------cceEEEEEEecccCEEEEEcC-CccEEEEchhhc
Confidence 3678999999999 89999843233333332 334999999998777777664 999999986543
No 355
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.25 E-value=6.5 Score=46.50 Aligned_cols=106 Identities=14% Similarity=0.024 Sum_probs=57.2
Q ss_pred EEEEEcCCcEEEEee------cCCccceeeecccc---cc-cCCCCcEEEEEcCCCCEEEEEecCC-eEEEEEccCCCcc
Q 002753 223 LFVLYSNGQLMSCSV------SKKGLKLAEFIKID---KE-LGSGDAVCASIAPEQQILAVGTRRG-VVELYDLAESASL 291 (884)
Q Consensus 223 ~~~~s~dG~~~~~~~------~d~~i~~w~~~~~~---~~-~~h~~~v~va~sp~~~~la~g~~dg-~v~lw~~~~~~~~ 291 (884)
...+++||+.++... .+..-.+|-...+. .+ .+. ...+-+|+|+|+.|++..... .+++.+-.. ...
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~-~gq 431 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA-TGQ 431 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC-CCCCceECCCCCceEEEecCcceEEEeccCC-Cce
Confidence 456788998776655 23333455432111 11 121 223378999999888876432 233333222 122
Q ss_pred eEEEe--eccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEE
Q 002753 292 IRTVS--LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (884)
Q Consensus 292 ~~~l~--~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~v 333 (884)
+..+. +... .. ...+.|..++|||||..+|.... +.|.+
T Consensus 432 l~~~~vd~ge~-~~-~~~g~Issl~wSpDG~RiA~i~~-g~v~V 472 (591)
T PRK13616 432 LARTPVDASAV-AS-RVPGPISELQLSRDGVRAAMIIG-GKVYL 472 (591)
T ss_pred EEEEeccCchh-hh-ccCCCcCeEEECCCCCEEEEEEC-CEEEE
Confidence 22111 1000 00 13567999999999999987663 55544
No 356
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.03 E-value=0.46 Score=47.33 Aligned_cols=99 Identities=10% Similarity=0.135 Sum_probs=58.4
Q ss_pred cEEEEeecCCccceeeecccc----cc-cCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCC
Q 002753 231 QLMSCSVSKKGLKLAEFIKID----KE-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (884)
Q Consensus 231 ~~~~~~~~d~~i~~w~~~~~~----~~-~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~ 304 (884)
+-++++..++.+.+|+..... .. .+-+...| +..-.++.+..+|+.||.||.|++.. .+.+-....
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~------- 142 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQ------- 142 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeecc-------
Confidence 345556666666655443110 00 22233344 44444667889999999999999976 454443333
Q ss_pred CCC-cCeEEEEECCCCCEEEEE--EcCCcEEEEeccC
Q 002753 305 DDT-GPVSCIAWTPDNSAFAVG--WKSRGLTVWSVSG 338 (884)
Q Consensus 305 ~h~-~~V~~l~~spdg~~Lasg--~~dg~v~vW~~~~ 338 (884)
|+ .++.....+..++.++.+ +.|..++.|++..
T Consensus 143 -h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 143 -HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred -ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 66 455555555566666666 6666677776643
No 357
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.97 E-value=0.81 Score=55.01 Aligned_cols=71 Identities=17% Similarity=0.294 Sum_probs=51.5
Q ss_pred CcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 002753 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 258 ~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~ 336 (884)
.+.+++||.+|++++.|-.+|.|.+||+.. ++..+.+....- .++ .|..+.|..++..+.++..-|. +|..
T Consensus 132 ~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~a----p~t-~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 132 PVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGA----PVT-GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCC----ccc-eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 344599999999999999999999999988 777776665110 022 3455667778887777766444 7775
No 358
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.76 E-value=39 Score=41.37 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=46.8
Q ss_pred CCCceEEEEEecCeEEEEEccCeEEEEecCCceeEEEEE-eeChHhhhhccceeEEEEcCCc------cEEEEEecCcEE
Q 002753 19 PSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKY-KRDSESVQREGENLQAVWSPDT------KLIAVVTSSLYL 91 (884)
Q Consensus 19 ~~~~~vv~fspdg~lla~~t~~~v~IW~~~~~~~~l~~~-~r~~~sl~~~G~~~~v~wsPDg------~~Lav~t~~g~l 91 (884)
|+...++....+.+.++++..+.-.+|...-...++..+ .|..- ...+.+++..|+. +.+++++.++.+
T Consensus 537 P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl----~~~vac~ai~~~~~g~krsrfla~a~~d~~v 612 (1205)
T KOG1898|consen 537 PERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTL----STDVACLAIGQDPEGEKRSRFLALASVDNMV 612 (1205)
T ss_pred CCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeee----ceeehhhccCCCCcchhhcceeeeeccccce
Confidence 455667766666556655543333344321133344444 23211 2455678888776 579999999999
Q ss_pred EEEEEEecC
Q 002753 92 HIFKVQITE 100 (884)
Q Consensus 92 ~l~~l~~~~ 100 (884)
+++.+....
T Consensus 613 riisL~p~d 621 (1205)
T KOG1898|consen 613 RIISLDPSD 621 (1205)
T ss_pred eEEEecCcc
Confidence 999987443
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=91.74 E-value=26 Score=39.26 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=31.5
Q ss_pred CCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEE
Q 002753 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (884)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~t 344 (884)
..|+|++++.| |=-++|+|+++|.+.|.|+.|...+.+
T Consensus 85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~ 122 (395)
T PF08596_consen 85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN 122 (395)
T ss_dssp -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee
Confidence 47999999998 555999999999999999999988766
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=91.63 E-value=25 Score=39.34 Aligned_cols=106 Identities=16% Similarity=0.255 Sum_probs=66.4
Q ss_pred EEcCCc-EEEEeecCCccceeeecccccc----cCCCCcEEEEEcCCCCEEEEEec---CCeEEEEEccCCCcceEEEee
Q 002753 226 LYSNGQ-LMSCSVSKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVSL 297 (884)
Q Consensus 226 ~s~dG~-~~~~~~~d~~i~~w~~~~~~~~----~~h~~~v~va~sp~~~~la~g~~---dg~v~lw~~~~~~~~~~~l~~ 297 (884)
++++|. .++...++..+...+....... .+. .+..++++|+++.+-++.. ++++.+.|..+ .+.+.....
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~~v 158 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATIPV 158 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEEec
Confidence 445555 6665555556665553332221 222 3444899999977666554 67888877766 555554333
Q ss_pred ccCCCCCCCCcCeEEEEECCCCCEEEEEE-cCCcEEEEeccCCeeE
Q 002753 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLM 342 (884)
Q Consensus 298 ~~~~~~~~h~~~V~~l~~spdg~~Lasg~-~dg~v~vW~~~~~~l~ 342 (884)
-..+ ..++++|+|..+.+.. .++.+.+.+..+....
T Consensus 159 --------G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 159 --------GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred --------CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 1234 7899999999666665 6689999997665544
No 361
>PRK13616 lipoprotein LpqB; Provisional
Probab=91.54 E-value=7.8 Score=45.85 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=50.1
Q ss_pred EEEEcCCCCEEEEEe------cCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCc-EEE
Q 002753 261 CASIAPEQQILAVGT------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG-LTV 333 (884)
Q Consensus 261 ~va~sp~~~~la~g~------~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~-v~v 333 (884)
..++||+|+.+|.-. .|+.-.||-....+.......+ ...+.-.|+|||..+++....+. +++
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g----------~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG----------HSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC----------CCCCCceECCCCCceEEEecCcceEEE
Confidence 389999999988765 2444455544331333222222 12667889999998887754212 222
Q ss_pred E-----------eccCCeeEEEeccccccceeeeeecCCC
Q 002753 334 W-----------SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 334 W-----------~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
. ++.++.... .. ...|+++++||||
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG 459 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RV-PGPISELQLSRDG 459 (591)
T ss_pred eccCCCceEEEEeccCchhhh---cc-CCCcCeEEECCCC
Confidence 2 333332211 11 3458888999988
No 362
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.37 E-value=0.09 Score=59.20 Aligned_cols=203 Identities=17% Similarity=0.225 Sum_probs=111.2
Q ss_pred CcEEEEEcC--CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC-CCCEEEEEEc----CCc
Q 002753 258 DAVCASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWK----SRG 330 (884)
Q Consensus 258 ~~v~va~sp--~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasg~~----dg~ 330 (884)
..-|++.+. +...+|+|..+|.|.+-.+...-.. .+.+.++|..+.++++|++ |...||+|-+ |-.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-------cceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 344655443 4568999999999999777641111 1123334788899999998 7788888853 457
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecceeEEEecCCceEEEEecCCcceEEEEeecceeecccC
Q 002753 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV 410 (884)
Q Consensus 331 v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~ 410 (884)
+.+||+.++.. .+..++.|+. + ...|...+.|. ...+.+.+|..
T Consensus 131 ~~Iwdi~s~lt---------vPke~~~fs~-~------~l~gqns~cwl--------------------rd~klvlaGm~ 174 (783)
T KOG1008|consen 131 LKIWDINSLLT---------VPKESPLFSS-S------TLDGQNSVCWL--------------------RDTKLVLAGMT 174 (783)
T ss_pred ccceecccccC---------CCcccccccc-c------cccCccccccc--------------------cCcchhhcccc
Confidence 99999977631 1111222211 0 11222344444 22344455555
Q ss_pred CCCceeeeeeecCCeEEEEecCCCCceeEEEeecccccccCCCceEEEEEcc-CCCEEEEEeCCceE-EEEccCCcEEEe
Q 002753 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (884)
Q Consensus 411 d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~~~p~~~~~~~~~I~~va~S~-dG~~lavag~dg~i-iwd~~s~~w~~f 488 (884)
...+.+.++.+..++. -.-....++.+.++| .+.|+++-. ||.+ +||..-+-=..|
T Consensus 175 sr~~~ifdlRqs~~~~---------------------~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl 232 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDSV---------------------SSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL 232 (783)
T ss_pred cchhhhhhhhhhhhhh---------------------hhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH
Confidence 5566666665443321 001122356688999 789998877 7777 999532211111
Q ss_pred c-Cccceeee--EEEEEEEeC--CEEEEEEEecCCCeEEEEEeeC
Q 002753 489 G-DITQEQKI--QSKGLLWLG--KIIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 489 ~-~~~~e~~~--~v~~~~W~~--~~lv~~~~~~~~~~~elr~y~~ 528 (884)
. ...+++.+ .+..+.|.+ ..+++.+.. ....||+|+.
T Consensus 233 ~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIrlydi 274 (783)
T KOG1008|consen 233 QIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIRLYDI 274 (783)
T ss_pred HHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEEEecc
Confidence 1 11112211 255677753 333333222 3457888886
No 363
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.85 E-value=46 Score=40.52 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=50.9
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCee
Q 002753 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (884)
Q Consensus 262 va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l 341 (884)
..|--|..+|.++..||.+.-|.++.........+...+ -+.|+.-=.|+..++.-+-+..|+-.-+|+-.+..+
T Consensus 589 ~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l-----Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv 663 (1096)
T KOG1897|consen 589 TTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTL-----GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLV 663 (1096)
T ss_pred EEeeccceEEEEEcCCceEEEEEEEcccceEcccccccc-----CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEE
Confidence 455556889999999999998888763333332222122 255677677876655444444568888898877766
Q ss_pred EEEe
Q 002753 342 MSTI 345 (884)
Q Consensus 342 ~~tl 345 (884)
+..+
T Consensus 664 ~spl 667 (1096)
T KOG1897|consen 664 YSPL 667 (1096)
T ss_pred Eecc
Confidence 5544
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.56 E-value=2.6 Score=50.69 Aligned_cols=92 Identities=18% Similarity=0.165 Sum_probs=58.4
Q ss_pred EEEeecCCccceeeecccc-cc--------cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceE-EEeeccCCC
Q 002753 233 MSCSVSKKGLKLAEFIKID-KE--------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGY 302 (884)
Q Consensus 233 ~~~~~~d~~i~~w~~~~~~-~~--------~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~-~l~~~~~~~ 302 (884)
.++|.++..+..||..-.. ++ ....+-.|++-+.+| .||+|+.+|.||+||- . +...+ .+.+
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~-g~~AKT~lp~----- 616 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-L-GKRAKTALPG----- 616 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-c-chhhhhcCCC-----
Confidence 3456666666666655321 11 111234455555555 7999999999999984 2 32222 2222
Q ss_pred CCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 002753 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 303 ~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~ 336 (884)
-..||..|..+.||+++++.+. ..+-+.++
T Consensus 617 ---lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 617 ---LGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ---CCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 4679999999999999887776 56666664
No 365
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=89.25 E-value=41 Score=38.72 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=41.8
Q ss_pred EEEcCCCCEEEEEecC-CeEEEEEccCC-CcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEc
Q 002753 262 ASIAPEQQILAVGTRR-GVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (884)
Q Consensus 262 va~sp~~~~la~g~~d-g~v~lw~~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (884)
+||+|..+.+|+++.. +.|.||.+... ...++.++.. ....-..++|-.|+-.|+.-+.
T Consensus 344 iAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe-------~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 344 IAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLE-------SNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred eeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcc-------cCCCCceeeEccCCeEEEEecc
Confidence 7999999999999976 47889998651 1345555542 2344567889888887776554
No 366
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.77 E-value=12 Score=43.70 Aligned_cols=98 Identities=9% Similarity=-0.024 Sum_probs=53.3
Q ss_pred ECCCCCEEEEEEcCCcEEEEeccC-----CeeEEEeccccccceeeeeecCCCCCCccceeecc----eeEEEecCCceE
Q 002753 315 WTPDNSAFAVGWKSRGLTVWSVSG-----CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRL 385 (884)
Q Consensus 315 ~spdg~~Lasg~~dg~v~vW~~~~-----~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~----~i~~W~~~~~~l 385 (884)
+.+||++...+ ++.|.+.|... ......+.-. .....++++||+ ..+..+. ++-+.+....+-
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDG----kylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDG----KYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECC--CCccceEECCCC----CEEEEeCCCCCcEEEEEChhhhh
Confidence 34578876663 57899999987 3455555432 345678899998 5544222 455555544321
Q ss_pred ------------EEEecCCcceE-EEEee-cceeecccCCCCceeeeee
Q 002753 386 ------------YAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVI 420 (884)
Q Consensus 386 ------------~~~~~~~~~~v-~~~~~-~~~~~s~~~d~~~~~w~l~ 420 (884)
.....-..+.+ .+|+. +....|--.|+.+-.|++.
T Consensus 356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred hhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 11111112222 44444 4455555556666666654
No 367
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.67 E-value=34 Score=35.78 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=55.2
Q ss_pred CcEEEEEcCCCCEEEEEe-cCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEe-
Q 002753 258 DAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS- 335 (884)
Q Consensus 258 ~~v~va~sp~~~~la~g~-~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~- 335 (884)
.....++|++++.+|.-. .++.-.||-....+.....+.+ ..+..-+|+++|...++...+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g----------~~l~~PS~d~~g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG----------GSLTRPSWDPDGWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC----------CccccccccCCCCEEEEEcCCCceEEEEe
Confidence 444589999999887655 2333344444431222222232 2567789999999888888777777774
Q ss_pred ccCCe-eEEEecccccc-ceeeeeecCCC
Q 002753 336 VSGCR-LMSTIRQISLS-SISSPIVKPNQ 362 (884)
Q Consensus 336 ~~~~~-l~~tl~~~~~~-~v~s~~~s~~~ 362 (884)
...+. ....+...... .|+++++||++
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG 123 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDG 123 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCC
Confidence 22222 12222211112 67788888877
No 368
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=88.60 E-value=1.5 Score=49.55 Aligned_cols=71 Identities=17% Similarity=0.373 Sum_probs=42.7
Q ss_pred EEEcCCCCEEEEE-ecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC-Cc--EEEEecc
Q 002753 262 ASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RG--LTVWSVS 337 (884)
Q Consensus 262 va~sp~~~~la~g-~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d-g~--v~vW~~~ 337 (884)
-+|||||+.||.. ..||...||-++..++....+.. -.+.-..=.|||||+.++-.++. |. |.+.+..
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~--------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~ 314 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN--------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE 314 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc--------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCC
Confidence 5899999988754 55776655555443344433332 12222345799999988876654 33 4455555
Q ss_pred CCe
Q 002753 338 GCR 340 (884)
Q Consensus 338 ~~~ 340 (884)
++.
T Consensus 315 g~~ 317 (425)
T COG0823 315 GSQ 317 (425)
T ss_pred CCc
Confidence 554
No 369
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.13 E-value=5.3 Score=48.71 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=48.0
Q ss_pred ceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEe-cCccceeeeEEEEEEEeCCEEEEEEEecCC------CeEEEEE
Q 002753 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF-GDITQEQKIQSKGLLWLGKIIVVCNYIDSS------NTYELLF 525 (884)
Q Consensus 454 ~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~f-~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~------~~~elr~ 525 (884)
..++++|||.|+++++|-.+|++ -|-..-..-+.. +-+..| .+.|.+++|....-.+..|.... ..++.+|
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-~yrvl~v~Wl~t~eflvvy~n~ts~~~dpd~y~~~~ 278 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-NYRVLSVTWLSTQEFLVVYGNVTSETDDPDSYDQKM 278 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-CcceeEEEEecceeEEEEecccccCcCCchhhhhcc
Confidence 47899999999999999999999 776543322222 222223 46788999997654444343222 3355667
Q ss_pred eeC
Q 002753 526 YPR 528 (884)
Q Consensus 526 y~~ 528 (884)
|..
T Consensus 279 ~k~ 281 (1405)
T KOG3630|consen 279 YKI 281 (1405)
T ss_pred ccc
Confidence 765
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=88.02 E-value=52 Score=37.16 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=25.2
Q ss_pred eEEEEECCCCCEEEEEE-cCC----cEEEEeccCCeeE
Q 002753 310 VSCIAWTPDNSAFAVGW-KSR----GLTVWSVSGCRLM 342 (884)
Q Consensus 310 V~~l~~spdg~~Lasg~-~dg----~v~vW~~~~~~l~ 342 (884)
+...++||||+++|.+- ..| .+++.|+.+++.+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l 163 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL 163 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc
Confidence 34678999999998764 334 4999999988654
No 371
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.75 E-value=1.9 Score=51.93 Aligned_cols=74 Identities=20% Similarity=0.307 Sum_probs=50.3
Q ss_pred EEEEEecCeEEEEEccCeEEEEecCCceeEEEEE--------eeC---hHhh---hhccceeEEEEcCCc---cEEEEEe
Q 002753 24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKY--------KRD---SESV---QREGENLQAVWSPDT---KLIAVVT 86 (884)
Q Consensus 24 vv~fspdg~lla~~t~~~v~IW~~~~~~~~l~~~--------~r~---~~sl---~~~G~~~~v~wsPDg---~~Lav~t 86 (884)
-|.+||+|+++|.++...|.|-.+.+....-+.+ .|+ ...+ .....+..+.|.|.+ ..|++-|
T Consensus 89 ~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLt 168 (717)
T PF10168_consen 89 QISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLT 168 (717)
T ss_pred EEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEe
Confidence 3678999999999999988887773211110101 111 1111 112456789999985 8999999
Q ss_pred cCcEEEEEEEE
Q 002753 87 SSLYLHIFKVQ 97 (884)
Q Consensus 87 ~~g~l~l~~l~ 97 (884)
+||.+|+|++.
T Consensus 169 sdn~lR~y~~~ 179 (717)
T PF10168_consen 169 SDNTLRLYDIS 179 (717)
T ss_pred cCCEEEEEecC
Confidence 99999999995
No 372
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.15 E-value=20 Score=41.12 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=26.7
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCceE--EEEccCC
Q 002753 450 SQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQK 483 (884)
Q Consensus 450 ~~~~~I~~va~S~dG~~lavag~dg~i--iwd~~s~ 483 (884)
...+-|.|.+|.+||+.|++|=...+- +||-..+
T Consensus 153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 345679999999999999998766654 8986543
No 373
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.55 E-value=1.9 Score=30.94 Aligned_cols=31 Identities=16% Similarity=0.361 Sum_probs=26.2
Q ss_pred cCeEEEEECCCC---CEEEEEEcCCcEEEEeccC
Q 002753 308 GPVSCIAWTPDN---SAFAVGWKSRGLTVWSVSG 338 (884)
Q Consensus 308 ~~V~~l~~spdg---~~Lasg~~dg~v~vW~~~~ 338 (884)
|.|++|+|||+. .+||-+..-+.+.|+|+..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999854 4888888889999999974
No 374
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.18 E-value=48 Score=34.86 Aligned_cols=176 Identities=14% Similarity=0.211 Sum_probs=101.1
Q ss_pred CccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccccCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccC
Q 002753 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (884)
Q Consensus 208 ~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~ 287 (884)
...+.+++|++..+...++...+-.++--..+|.+- .. -.+.+-.++-.+.+--+++++++--.++++.++.++.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdli--rt---iPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLI--RT---IPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceE--EE---ecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 344777888777776666655555544333333211 11 1124445666677778899999888899999998887
Q ss_pred CCcceEEEeecc--CCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCC
Q 002753 288 SASLIRTVSLYD--WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (884)
Q Consensus 288 ~~~~~~~l~~~~--~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~ 365 (884)
.+..+. ....+ ++........--.++|.|..+.|..+-+.+-+.|+.+.+.. ..+..| +...|.. .
T Consensus 160 ~t~~~~-~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~--~~l~~~-------~~~~~~~--~ 227 (316)
T COG3204 160 DTTVIS-AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP--SSLSVH-------ASLDPTA--D 227 (316)
T ss_pred CccEEe-ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC--cccccc-------cccCccc--c
Confidence 333222 11111 11111124456789999999999998888888888876432 111111 0001111 1
Q ss_pred ccceeecceeEEEecCCceEEEEecCCcceEEEEee
Q 002753 366 YEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (884)
Q Consensus 366 ~~~l~sg~~i~~W~~~~~~l~~~~~~~~~~v~~~~~ 401 (884)
...++...+...++..++.+++...+ +..+..++.
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~E-Sr~l~Evd~ 262 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDE-SRRLLEVDL 262 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecC-CceEEEEec
Confidence 13445556777888888887776533 334454443
No 375
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=84.65 E-value=76 Score=35.81 Aligned_cols=57 Identities=19% Similarity=0.401 Sum_probs=38.8
Q ss_pred EEEcCCCCEEEEEe-cCC----eEEEEEccCCCcceE-EEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCC
Q 002753 262 ASIAPEQQILAVGT-RRG----VVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (884)
Q Consensus 262 va~sp~~~~la~g~-~dg----~v~lw~~~~~~~~~~-~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg 329 (884)
.++||+++++|.+- ..| +++++|+++ ++.+. .+.. .. -..+.|++||+.|.-...|.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~---------~~-~~~~~W~~d~~~~~y~~~~~ 191 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIEN---------PK-FSSVSWSDDGKGFFYTRFDE 191 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEE---------EE-SEEEEECTTSSEEEEEECST
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCcccc---------cc-cceEEEeCCCCEEEEEEeCc
Confidence 68999999999763 333 599999988 55444 2232 11 13399999999877665443
No 376
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=84.63 E-value=54 Score=34.09 Aligned_cols=216 Identities=13% Similarity=0.068 Sum_probs=95.9
Q ss_pred ceEEEEEecCe-EEEEEc-cCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002753 22 QQIIYFKVNNG-LLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (884)
Q Consensus 22 ~~vv~fspdg~-lla~~t-~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~ 99 (884)
-+-++++||++ ++|+.. +..|...+. .+..+.... +..+|..-.+++.-++.++++.-.++.|.++++...
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~-----l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIP-----LDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE------SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEe-----CCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 35589999865 555443 345555554 333343332 344677778999887766655545788888888533
Q ss_pred CceeecCCCCCCCceeeeeeeeeeccccccccceeEE--EEeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCc
Q 002753 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (884)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~--~i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~ 177 (884)
...... ..+..+.+... ...+...- |..+.++.++++....-..++.++..... ..+ .
T Consensus 97 ~~~~~~-------~~~~~~~l~~~-----~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~-~~~-------~ 156 (248)
T PF06977_consen 97 TTSLDR-------ADVQKISLGFP-----NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG-FDL-------F 156 (248)
T ss_dssp -TT--E-------EEEEEEE---S--------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S-S---------E
T ss_pred ccccch-------hhceEEecccc-----cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc-cce-------e
Confidence 221100 00111111111 01111122 44455677888776665555555542100 000 0
Q ss_pred cceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccc-eeeecccccc--c
Q 002753 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKE--L 254 (884)
Q Consensus 178 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~-~w~~~~~~~~--~ 254 (884)
....... ......-..+.++++++..+.+.++|..++.++.-..++.+. .+....+..- .
T Consensus 157 ~~~~~~~-----------------~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~ 219 (248)
T PF06977_consen 157 VSDDQDL-----------------DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSK 219 (248)
T ss_dssp EEE-HHH-----------------H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS
T ss_pred ecccccc-----------------ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCccc
Confidence 0000000 000111223667788898888888888888877666666643 3333322100 1
Q ss_pred CCCCcEEEEEcCCCCEEEEEecCCeEEE
Q 002753 255 GSGDAVCASIAPEQQILAVGTRRGVVEL 282 (884)
Q Consensus 255 ~h~~~v~va~sp~~~~la~g~~dg~v~l 282 (884)
....+--+++.++|++.++. +-+...+
T Consensus 220 ~~~QpEGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 220 DIPQPEGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp ---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred ccCCccEEEECCCCCEEEEc-CCceEEE
Confidence 11234448899999877774 3334333
No 377
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.17 E-value=75 Score=35.36 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCC
Q 002753 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (884)
Q Consensus 306 h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~ 339 (884)
..|+|.+++||+|.+.||+--.|++|.+++..+.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 5789999999999999999999999999987554
No 378
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.34 E-value=2.6 Score=45.41 Aligned_cols=57 Identities=11% Similarity=0.104 Sum_probs=46.9
Q ss_pred CCCCcCeEEEEECCCCC-EEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 002753 304 MDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 304 ~~h~~~V~~l~~spdg~-~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
+.|...|++++|||..+ ++..++.+++|+|.|+.+.....+...+ +.+.++.|.-++
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde 247 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDE 247 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCC
Confidence 34788899999999888 7888999999999999999888777665 567777776664
No 379
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=83.22 E-value=97 Score=35.95 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=39.0
Q ss_pred CEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC--CCCEEEEEE---------cCCcEEEEecc
Q 002753 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGW---------KSRGLTVWSVS 337 (884)
Q Consensus 269 ~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasg~---------~dg~v~vW~~~ 337 (884)
..+..++.+|.|.-+|.++ ++.+-...... +...-..+.-+| .+..+++++ .++.+.-.|..
T Consensus 111 ~~V~v~~~~g~v~AlD~~T-G~~~W~~~~~~------~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~ 183 (488)
T cd00216 111 RKVFFGTFDGRLVALDAET-GKQVWKFGNND------QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVE 183 (488)
T ss_pred CeEEEecCCCeEEEEECCC-CCEeeeecCCC------CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECC
Confidence 5777888999999999988 65544333210 100000111122 123344443 35678888888
Q ss_pred CCeeEEEec
Q 002753 338 GCRLMSTIR 346 (884)
Q Consensus 338 ~~~l~~tl~ 346 (884)
+++..-+..
T Consensus 184 TG~~~W~~~ 192 (488)
T cd00216 184 TGKLLWRFY 192 (488)
T ss_pred CCceeeEee
Confidence 777665543
No 380
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.18 E-value=3.4 Score=29.70 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.0
Q ss_pred CceEEEEEccC-C--CEEEEEeCCceE-EEEccC
Q 002753 453 WPVQHVAASKD-G--MFLAVAGLHGLI-LYDIRQ 482 (884)
Q Consensus 453 ~~I~~va~S~d-G--~~lavag~dg~i-iwd~~s 482 (884)
+.||++.|||+ + ..||.+-..|.+ ++|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 36899999985 4 599999999999 999976
No 381
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.08 E-value=20 Score=43.44 Aligned_cols=80 Identities=25% Similarity=0.324 Sum_probs=53.7
Q ss_pred cEE-EEEcCCCCEEEEEecCCeEEEEEccC-C--------Cc---ceEEEeeccCCCCCCCCcCeEEEEECCC---CCEE
Q 002753 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAE-S--------AS---LIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAF 322 (884)
Q Consensus 259 ~v~-va~sp~~~~la~g~~dg~v~lw~~~~-~--------~~---~~~~l~~~~~~~~~~h~~~V~~l~~spd---g~~L 322 (884)
.|. +.+||+|+++|..+..|.+.+. +.. . ++ ..++......-+..++...|..+.|.|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~-LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLE-LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEE-eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 455 8999999999998887754442 221 0 11 1122222222223345678999999996 5799
Q ss_pred EEEEcCCcEEEEeccCC
Q 002753 323 AVGWKSRGLTVWSVSGC 339 (884)
Q Consensus 323 asg~~dg~v~vW~~~~~ 339 (884)
++-..|+++|+||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999999653
No 382
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=82.15 E-value=80 Score=34.22 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=36.3
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEEccCC------Cc-ceEEEeeccCCCCCCCCcCeEEE---EECCC--CC------E
Q 002753 260 VCASIAPEQQILAVGTRRGVVELYDLAES------AS-LIRTVSLYDWGYSMDDTGPVSCI---AWTPD--NS------A 321 (884)
Q Consensus 260 v~va~sp~~~~la~g~~dg~v~lw~~~~~------~~-~~~~l~~~~~~~~~~h~~~V~~l---~~spd--g~------~ 321 (884)
+++.+-++++.++++..+|.+.++..+.. +. .+....... ....|+++ +..|. +. .
T Consensus 176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~------lg~~v~~~~~~~l~~~~~~~~~~~~~~ 249 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH------LGDIVNSFRRGSLIPRSGSSESPNRPQ 249 (321)
T ss_dssp EEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-------SS-EEEEEE--SS--SSSS-TTEEEE
T ss_pred EEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE------CCCccceEEEEEeeecCCCCcccccce
Confidence 33666656678999999999999888631 11 222222111 23456776 55552 22 3
Q ss_pred EEEEEcCCcEEEE
Q 002753 322 FAVGWKSRGLTVW 334 (884)
Q Consensus 322 Lasg~~dg~v~vW 334 (884)
++-+..+|+|-+.
T Consensus 250 i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 250 ILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEETTS-EEEE
T ss_pred EEEEecCCEEEEE
Confidence 6667777887643
No 383
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.56 E-value=6 Score=38.72 Aligned_cols=75 Identities=19% Similarity=0.303 Sum_probs=47.4
Q ss_pred ceEEEEEecCeEEEEEccCeEEEEecCCce-------------------eEEEEEeeChH-----------hhh----hc
Q 002753 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHK-------------------VRLGKYKRDSE-----------SVQ----RE 67 (884)
Q Consensus 22 ~~vv~fspdg~lla~~t~~~v~IW~~~~~~-------------------~~l~~~~r~~~-----------sl~----~~ 67 (884)
-..++.|.|| .+|++++..|.|.+...|. ..+..+.+... ++. ..
T Consensus 7 ~~~l~WS~Dg-~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 7 PNALAWSEDG-QLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CcCeeECCCC-CEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 4568899999 6777888888888432222 00111111110 000 11
Q ss_pred cceeEEEEcCCc------cEEEEEecCcEEEEEEEE
Q 002753 68 GENLQAVWSPDT------KLIAVVTSSLYLHIFKVQ 97 (884)
Q Consensus 68 G~~~~v~wsPDg------~~Lav~t~~g~l~l~~l~ 97 (884)
+.+++++|||-| -.||+.|++|.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 367899999965 379999999999999865
No 384
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=79.60 E-value=85 Score=32.94 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=40.0
Q ss_pred ecCeEEEEEccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEe
Q 002753 29 VNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (884)
Q Consensus 29 pdg~lla~~t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~ 98 (884)
..++.|+.+|++.+.+++...+..+.... +...+..+..-|+-..|++-+ |++|.+|++..
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~--------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRIL--------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEe--------ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 45667777888889999883132221111 112267888888877777765 48999999853
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=79.41 E-value=5.4 Score=39.98 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=49.4
Q ss_pred CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEE-EEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 002753 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC-IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (884)
Q Consensus 267 ~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~-l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl 345 (884)
-++-+++|+.+|.|.+|+....+........ -...|.+ +.-.-++.+..++..||.++-|++.-++.+...
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s--------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS--------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc--------ccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 3567899999999999998753333222211 1122222 333346678888999999999999888777666
Q ss_pred ccc
Q 002753 346 RQI 348 (884)
Q Consensus 346 ~~~ 348 (884)
.+|
T Consensus 141 g~h 143 (238)
T KOG2444|consen 141 GQH 143 (238)
T ss_pred ccc
Confidence 555
No 386
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=78.63 E-value=1.4e+02 Score=36.68 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=46.6
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEE-----------eeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCC
Q 002753 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTV-----------SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (884)
Q Consensus 261 ~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l-----------~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg 329 (884)
.+....-+..++....||+|.++|-.+ -+.+... ...+-++...+-.++..++|||.+..++.-..||
T Consensus 264 si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~ 342 (753)
T PF11635_consen 264 SITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDG 342 (753)
T ss_pred EEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCC
Confidence 355555677899999999999999766 3222111 1111222222333566799999999999999988
Q ss_pred cEE
Q 002753 330 GLT 332 (884)
Q Consensus 330 ~v~ 332 (884)
.+.
T Consensus 343 ~~~ 345 (753)
T PF11635_consen 343 KTK 345 (753)
T ss_pred Cce
Confidence 866
No 387
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.06 E-value=29 Score=42.79 Aligned_cols=105 Identities=11% Similarity=0.016 Sum_probs=61.8
Q ss_pred CccEEEEEEcCCc-ceEEEEEcCCcEEEEeecCCccceeeecccccccCCCCcEEEEEcCCCCEEEEEecCCeEEEEEcc
Q 002753 208 SSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (884)
Q Consensus 208 ~~~i~~i~~~~~~-~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~ 286 (884)
.....++.|+|.. ...++...|+.+.+..... .. ..... ..-....+|++|+|+|+.+++|-.+|++.-|.-.
T Consensus 155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~-~~--~~v~s---~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ-LA--QNVTS---FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred ccccccccccCCccchhhhhccccchhhhhhhh-hh--hhhcc---cCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 3445566777754 3556666777765432211 00 00001 1112356679999999999999999999988654
Q ss_pred CCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEE
Q 002753 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (884)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Las 324 (884)
- +..+.+... +.. ..+.|.||+|-..-.++++
T Consensus 229 l--eik~~ip~P--p~~--e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 229 L--EIKSEIPEP--PVE--ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred c--ceeecccCC--CcC--CCcceeEEEEecceeEEEE
Confidence 2 333333331 111 2578999999876666654
No 388
>PHA02713 hypothetical protein; Provisional
Probab=77.04 E-value=45 Score=39.41 Aligned_cols=27 Identities=11% Similarity=0.340 Sum_probs=24.0
Q ss_pred CCCEEEEEeCCc--eE-EEEccCCcEEEec
Q 002753 463 DGMFLAVAGLHG--LI-LYDIRQKKWRVFG 489 (884)
Q Consensus 463 dG~~lavag~dg--~i-iwd~~s~~w~~f~ 489 (884)
+|+..++||.+| .+ .||+.+++|....
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchh
Confidence 899999999999 67 9999999998653
No 389
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=76.74 E-value=1.6 Score=49.69 Aligned_cols=109 Identities=15% Similarity=0.280 Sum_probs=66.0
Q ss_pred EEEEEcC-CCCEEEEEe----cCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEE
Q 002753 260 VCASIAP-EQQILAVGT----RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (884)
Q Consensus 260 v~va~sp-~~~~la~g~----~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW 334 (884)
++.||++ |...||.|- .|..+.|||+.. .-.. ...++.++.+......+++|-.|-+.+.+|...+.+.++
T Consensus 106 t~lAwneLDtn~LAagldkhrnds~~~Iwdi~s-~ltv---Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~if 181 (783)
T KOG1008|consen 106 TSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS-LLTV---PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIF 181 (783)
T ss_pred cccccccccHHHHHhhhhhhcccCCccceeccc-ccCC---CccccccccccccCccccccccCcchhhcccccchhhhh
Confidence 4489988 677888874 367899999976 2100 001111111123345689999999999999998899999
Q ss_pred eccCCee-EEEeccccccceeeeeecC-CCCCCccceeecc--eeEEEe
Q 002753 335 SVSGCRL-MSTIRQISLSSISSPIVKP-NQDCKYEPLMSGT--SMMQWD 379 (884)
Q Consensus 335 ~~~~~~l-~~tl~~~~~~~v~s~~~s~-~~~~~~~~l~sg~--~i~~W~ 379 (884)
|+.-... ...+. +..+..+.++| .. .++++.. .+.+||
T Consensus 182 dlRqs~~~~~svn---Tk~vqG~tVdp~~~----nY~cs~~dg~iAiwD 223 (783)
T KOG1008|consen 182 DLRQSLDSVSSVN---TKYVQGITVDPFSP----NYFCSNSDGDIAIWD 223 (783)
T ss_pred hhhhhhhhhhhhh---hhhcccceecCCCC----CceeccccCceeecc
Confidence 9863221 11111 22344555555 33 4555443 778898
No 390
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=76.71 E-value=26 Score=42.47 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=58.4
Q ss_pred EEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEecccc
Q 002753 270 ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS 349 (884)
Q Consensus 270 ~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~ 349 (884)
...+|-.+..+..||.+-.+..+..-..++ |+ ......|++=+.+| +||+|+.+|.||++|-.|.+....+.+-
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~--Y~--~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~l- 617 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ--YS--SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGL- 617 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccc--cc--cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCC-
Confidence 445677788888899876332221112222 11 34456778777777 5899999999999997775544455554
Q ss_pred ccceeeeeecCCC
Q 002753 350 LSSISSPIVKPNQ 362 (884)
Q Consensus 350 ~~~v~s~~~s~~~ 362 (884)
..+|..+..+.||
T Consensus 618 G~pI~~iDvt~DG 630 (794)
T PF08553_consen 618 GDPIIGIDVTADG 630 (794)
T ss_pred CCCeeEEEecCCC
Confidence 3678888888888
No 391
>PRK02888 nitrous-oxide reductase; Validated
Probab=76.62 E-value=15 Score=42.97 Aligned_cols=101 Identities=12% Similarity=0.219 Sum_probs=64.6
Q ss_pred EcCCcEEEEeecCCccceeeecc----cccc---cCCCCcEE-EEEcCCCCEEEE-EecCCeEEEEEccCCCc-------
Q 002753 227 YSNGQLMSCSVSKKGLKLAEFIK----IDKE---LGSGDAVC-ASIAPEQQILAV-GTRRGVVELYDLAESAS------- 290 (884)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~----~~~~---~~h~~~v~-va~sp~~~~la~-g~~dg~v~lw~~~~~~~------- 290 (884)
.+||+...+ .+..+.+.|..+ .... ..-...-. +++||||+++.+ |..+.+|.|.|+.+...
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 457776554 344566666655 1111 11223334 899999997765 45588999999976211
Q ss_pred ----ceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 002753 291 ----LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (884)
Q Consensus 291 ----~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~ 338 (884)
....... -.|| ...+|.++|+...|-.-|..|..|++..
T Consensus 363 ~~~~vvaevev--------GlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPEL--------GLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeecc--------CCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1111111 1334 3468999999999999999999999865
No 392
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.30 E-value=1.6e+02 Score=35.22 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=84.3
Q ss_pred CCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEcCCcc
Q 002753 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (884)
Q Consensus 142 ~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (884)
.+.+++-.++|.++++.|-++...... .+ .....+.|.+..+.. +
T Consensus 94 ~eeLI~v~k~g~v~Vy~~~ge~ie~~s-----------------vg----------------~e~~~~~I~ec~~f~--~ 138 (829)
T KOG2280|consen 94 DEELICVQKDGTVHVYGLLGEFIESNS-----------------VG----------------FESQMSDIVECRFFH--N 138 (829)
T ss_pred CceEEEEeccceEEEeecchhhhcccc-----------------cc----------------cccccCceeEEEEec--C
Confidence 467888899999999999877644221 00 011122244443322 6
Q ss_pred eEEEEEcCCcEEEEeecCCccceeeecccccccCC-CCcEE-EEEcCCCC---EEEEEecCCeEEEEEccCCCcceEEEe
Q 002753 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGS-GDAVC-ASIAPEQQ---ILAVGTRRGVVELYDLAESASLIRTVS 296 (884)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~~h-~~~v~-va~sp~~~---~la~g~~dg~v~lw~~~~~~~~~~~l~ 296 (884)
+.++.+.+|+++...... ..++|....- ++. ....| -.+-|... ++.+.-..|. .++.++........+
T Consensus 139 GVavlt~~g~v~~i~~~~-~~~~~~~~di---P~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~-~~~q~~~~~~q~~~~- 212 (829)
T KOG2280|consen 139 GVAVLTVSGQVILINGVE-EPKLRKMPDI---PYNELPKSCWTVFQPHRQSTILLDVDVAVGL-HICQVEESRVQLHAL- 212 (829)
T ss_pred ceEEEecCCcEEEEcCCC-cchhhhCCCC---CCccCCCcceeEecCCCcceeEEeechhhhh-cccceeccccccccc-
Confidence 778888889887754432 2333333221 111 11234 33333322 1222211111 122222211111111
Q ss_pred eccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 002753 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (884)
Q Consensus 297 ~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~ 346 (884)
++. .+.+..+..||++++||-=..+|.+.+-+..-.+.++++.
T Consensus 213 ------~~~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 213 ------SWP-NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ------CCC-CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 111 3557889999999999998889999999888777777765
No 393
>PRK13684 Ycf48-like protein; Provisional
Probab=75.96 E-value=1.2e+02 Score=33.29 Aligned_cols=116 Identities=10% Similarity=0.074 Sum_probs=61.1
Q ss_pred cEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 002753 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 259 ~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~ 337 (884)
.+. +.+.|++.++++|. .|.+.. ..++.++....... .-...++++.+.|+|+.+++|.. |.+.+=+..
T Consensus 174 ~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~-------~~~~~l~~i~~~~~g~~~~vg~~-G~~~~~s~d 243 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPHQR-------NSSRRLQSMGFQPDGNLWMLARG-GQIRFNDPD 243 (334)
T ss_pred eEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEeeC-------CCcccceeeeEcCCCCEEEEecC-CEEEEccCC
Confidence 344 88899988887765 455432 12231222322222 13467899999999998887653 554332455
Q ss_pred CCeeEEEeccc---cccceeeeeecCCCCCCccceeecc-eeEEEecCCceEEEE
Q 002753 338 GCRLMSTIRQI---SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAI 388 (884)
Q Consensus 338 ~~~l~~tl~~~---~~~~v~s~~~s~~~~~~~~~l~sg~-~i~~W~~~~~~l~~~ 388 (884)
++.-....... ....+.++.+.+++ ..++.|. -.+....++++-|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~----~~~~~G~~G~v~~S~d~G~tW~~ 294 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPG----EIWAGGGNGTLLVSKDGGKTWEK 294 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCC----CEEEEcCCCeEEEeCCCCCCCeE
Confidence 55544332211 01235566666655 4454443 233344444454444
No 394
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.56 E-value=61 Score=38.40 Aligned_cols=51 Identities=16% Similarity=0.414 Sum_probs=34.7
Q ss_pred eEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 002753 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (884)
Q Consensus 279 ~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~ 340 (884)
.|+||+.. |..+..+.- ..+++..+.||.|..+|++ .+||++.|++..|..
T Consensus 65 ~I~If~~s--G~lL~~~~w--------~~~~lI~mgWs~~eeLI~v-~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 65 YIRIFNIS--GQLLGRILW--------KHGELIGMGWSDDEELICV-QKDGTVHVYGLLGEF 115 (829)
T ss_pred eEEEEecc--ccchHHHHh--------cCCCeeeecccCCceEEEE-eccceEEEeecchhh
Confidence 47777764 344433322 2347888999988776655 567999999998754
No 395
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=73.95 E-value=74 Score=33.20 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=38.2
Q ss_pred EEEcCCCCEEEEEecCCeEEEEE-ccCCCcce-EEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEc
Q 002753 262 ASIAPEQQILAVGTRRGVVELYD-LAESASLI-RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (884)
Q Consensus 262 va~sp~~~~la~g~~dg~v~lw~-~~~~~~~~-~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (884)
-+|++++.+.++...+...+++. ..+ +... ..+.... -.+.|.++++||||..+|.-..
T Consensus 71 PS~d~~g~~W~v~~~~~~~~~~~~~~~-g~~~~~~v~~~~------~~~~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 71 PSWDPDGWVWTVDDGSGGVRVVRDSAS-GTGEPVEVDWPG------LRGRITALRVSPDGTRVAVVVE 131 (253)
T ss_pred ccccCCCCEEEEEcCCCceEEEEecCC-CcceeEEecccc------cCCceEEEEECCCCcEEEEEEe
Confidence 68999988888877777777764 222 2211 1222200 1228999999999999988763
No 396
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=73.76 E-value=1.3 Score=52.33 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=43.5
Q ss_pred EcCCCCEEEEEecCCeEEEEEccCCCcceEEEeec-cCCCCC--CCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 002753 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY-DWGYSM--DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 264 ~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~-~~~~~~--~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~ 337 (884)
|-+...++..|-.+|+|++-+++.... ..+.++ ++.... -..|-+.--..||||+.+|.+..||.++.|.++
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 334567888888899999977664111 112220 000000 011212222479999999999999999999873
No 397
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=73.67 E-value=55 Score=35.47 Aligned_cols=111 Identities=20% Similarity=0.207 Sum_probs=61.5
Q ss_pred CCceEEEEEccCCCEEEEEeCCceEEEEccCCc-EEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCC
Q 002753 452 NWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK-WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYH 530 (884)
Q Consensus 452 ~~~I~~va~S~dG~~lavag~dg~iiwd~~s~~-w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~~~ 530 (884)
.++|.+++-- +|+ +++|....+.+|++...+ +..- ......+.+..+...++.+++|... .+ -.+--|..+
T Consensus 88 ~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~--~~~~~~~~i~sl~~~~~~I~vgD~~--~s-v~~~~~~~~- 159 (321)
T PF03178_consen 88 KGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKK--AFYDSPFYITSLSVFKNYILVGDAM--KS-VSLLRYDEE- 159 (321)
T ss_dssp SS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEE--EEE-BSSSEEEEEEETTEEEEEESS--SS-EEEEEEETT-
T ss_pred cCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhh--heecceEEEEEEeccccEEEEEEcc--cC-EEEEEEEcc-
Confidence 5778887766 454 666655554499998887 4432 1122234577889999999988332 22 222223331
Q ss_pred CCCc-ceEEEEecCCccEEEEc--cCCEEEEEEcCCeEEEEEEE
Q 002753 531 LDQS-SLLCRKSLLAKPIVMDV--YEDYILVTYRPFDVHIFHVK 571 (884)
Q Consensus 531 l~~~-~~l~~~~~~~~~~~~~~--~~~~llv~~~~~~i~i~~~~ 571 (884)
... ..+.+...+..+....+ .++.++++..++.+.++.+.
T Consensus 160 -~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 160 -NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred -CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 111 12223222333344433 34588888999999999885
No 398
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=73.61 E-value=71 Score=32.13 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=54.3
Q ss_pred CEEEEEeCCceE-EEEccCCcEEEecCccceeeeE----EEEEEE--eCCEEEEEEEecCCCeE---EEEEeeCC--C-C
Q 002753 465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ----SKGLLW--LGKIIVVCNYIDSSNTY---ELLFYPRY--H-L 531 (884)
Q Consensus 465 ~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~----v~~~~W--~~~~lv~~~~~~~~~~~---elr~y~~~--~-l 531 (884)
..|.+|...+.+ +|++...+-..+ ..|. |..+.. .||++++- .++.... -+|+|--- . .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~------~~F~Tv~~V~~l~y~~~GDYlvTl--E~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLL------CTFSTVGRVLQLVYSEAGDYLVTL--EEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCcee------EEEcchhheeEEEeccccceEEEE--EeecCCccceEEEEEEEhhhhcc
Confidence 455555556667 999985443332 1122 333433 48888875 3223333 77887510 0 0
Q ss_pred CC--------------------c--ceEEEEecCCccEEEEcc--CCEEEEEEcCCeEEEEEEEE
Q 002753 532 DQ--------------------S--SLLCRKSLLAKPIVMDVY--EDYILVTYRPFDVHIFHVKL 572 (884)
Q Consensus 532 ~~--------------------~--~~l~~~~~~~~~~~~~~~--~~~llv~~~~~~i~i~~~~~ 572 (884)
++ . ..+-+.+++.+|..+++. ...|+|++. ..+.||.+..
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~ 164 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKY 164 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEE
Confidence 11 1 112244555678888753 345777664 5999998874
No 399
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=73.35 E-value=30 Score=40.88 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=63.4
Q ss_pred EEcCCcEEEEeecCCccceeeecccccc----cCCCCcEE-EEE--cCCCCEEEEEecCCeEEEEEccCC-----C---c
Q 002753 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASI--APEQQILAVGTRRGVVELYDLAES-----A---S 290 (884)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~~h~~~v~-va~--sp~~~~la~g~~dg~v~lw~~~~~-----~---~ 290 (884)
.++-+++.++..+..++.+||...+... ....+.+. +.| .|+++.+.+-+....|.+|.-..+ + .
T Consensus 37 gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 37 GSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred ecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 3456666666556666778988765422 12234554 655 467877776677888988864210 1 2
Q ss_pred ceEEEeeccCCCCCCCC-cCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 002753 291 LIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 291 ~~~~l~~~~~~~~~~h~-~~V~~l~~spdg~~Lasg~~dg~v~vW~~ 336 (884)
.++.+...+ |+ .+|.+..|.+||.+++.++ +.+.|++-
T Consensus 117 ~i~~i~i~~------~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 117 PIRKIDISS------HTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred eeEEEEeec------CCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 233333211 44 6799999999998776554 57777764
No 400
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=72.55 E-value=9.8 Score=42.60 Aligned_cols=94 Identities=19% Similarity=0.226 Sum_probs=56.8
Q ss_pred EEEEcCCCCEEEEEecCCeEEE---EEccCCC--cceE--EEeeccCCCCCCCCcCeEEEEEC-----------CCCCEE
Q 002753 261 CASIAPEQQILAVGTRRGVVEL---YDLAESA--SLIR--TVSLYDWGYSMDDTGPVSCIAWT-----------PDNSAF 322 (884)
Q Consensus 261 ~va~sp~~~~la~g~~dg~v~l---w~~~~~~--~~~~--~l~~~~~~~~~~h~~~V~~l~~s-----------pdg~~L 322 (884)
.++.+|++++||.|..+.-+.+ |+....+ .... ...+. . ..+....|+++.|- ||..++
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~-l--~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I 82 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGP-L--DDEPGECITSILCLPLSSQKRSTGGPDWTCI 82 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeee-c--cCCCCCEEEEEEEEEeecccccCCCCCcEEE
Confidence 3788899999999887766655 5432211 1111 22221 0 00011456666553 467899
Q ss_pred EEEEcCCcEEEEeccCCeeEEEeccccccceeeeeec
Q 002753 323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (884)
Q Consensus 323 asg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s 359 (884)
|+|..+|.|++++..|..++...- | .++|..+...
T Consensus 83 ~VG~ssG~vrfyte~G~LL~~Q~~-h-~~pV~~ik~~ 117 (415)
T PF14655_consen 83 AVGTSSGYVRFYTENGVLLLSQLL-H-EEPVLKIKCR 117 (415)
T ss_pred EEEecccEEEEEeccchHHHHHhc-C-ccceEEEEec
Confidence 999999999999998776554432 2 4566666543
No 401
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.02 E-value=83 Score=29.08 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=62.1
Q ss_pred EEcCCCCEEEEEecCCeEEEEEccCC-------CcceEEEeeccCCCCCCCCcCeEEEEECC-----CCCEEEEEEcCCc
Q 002753 263 SIAPEQQILAVGTRRGVVELYDLAES-------ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-----DNSAFAVGWKSRG 330 (884)
Q Consensus 263 a~sp~~~~la~g~~dg~v~lw~~~~~-------~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-----dg~~Lasg~~dg~ 330 (884)
.|.....-|+.++.-|+|.|++.... ...++.+.. ...|++++-.+ +...|..|+. .+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---------n~~italaaG~l~~~~~~D~LliGt~-t~ 74 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---------NQEITALAAGRLKPDDGRDCLLIGTQ-TS 74 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---------CCceEEEEEEecCCCCCcCEEEEecc-ce
Confidence 45555567888888889999876531 123344443 34566664433 3558888887 78
Q ss_pred EEEEeccCCeeEEEeccccccceeeeeecCCCCCCccceeecc--eeEEEecCCceEEE
Q 002753 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYA 387 (884)
Q Consensus 331 v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~~~~l~sg~--~i~~W~~~~~~l~~ 387 (884)
+-.||+..+.-+..-.- .+.++++.+-.-+......++-|. ++.-++.++.+++-
T Consensus 75 llaYDV~~N~d~Fyke~--~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 75 LLAYDVENNSDLFYKEV--PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred EEEEEcccCchhhhhhC--ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 99999987653322111 245666655333221113333333 44444555555443
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.28 E-value=18 Score=40.74 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=54.5
Q ss_pred EeecCCccceeeeccccc----c-cCC-----CCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCC
Q 002753 235 CSVSKKGLKLAEFIKIDK----E-LGS-----GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (884)
Q Consensus 235 ~~~~d~~i~~w~~~~~~~----~-~~h-----~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~ 304 (884)
+|.++..+.-||..-..+ + .+| .+--|.+-. ...+||+|+.+|.|||||--. ......+.+
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~-~~AKTAlPg------- 469 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIG-RRAKTALPG------- 469 (644)
T ss_pred EeecCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEEEeecCCcEEeehhhh-hhhhhcccc-------
Confidence 355666666666542111 1 222 223343332 345899999999999999632 222223344
Q ss_pred CCCcCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 002753 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 305 ~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~ 336 (884)
-..+|+.|.-+.||+++...++ ..+-+-++
T Consensus 470 -LG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 470 -LGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred -cCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 5678999999999998876665 45544443
No 403
>PHA03098 kelch-like protein; Provisional
Probab=70.98 E-value=1.3e+02 Score=35.44 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=22.4
Q ss_pred CCCEEEEEeCC-----ceE-EEEccCCcEEEecC
Q 002753 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFGD 490 (884)
Q Consensus 463 dG~~lavag~d-----g~i-iwd~~s~~w~~f~~ 490 (884)
+|+.++.||.+ ..+ .||..+++|..+..
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 78888888865 356 99999999998754
No 404
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=70.66 E-value=21 Score=39.33 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=24.4
Q ss_pred ceeEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002753 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (884)
Q Consensus 69 ~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~ 99 (884)
.+..+...|||+.|++-+. +.+.+|++...
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r 251 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKR 251 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeeccc
Confidence 3456778999999999987 68999999643
No 405
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=69.97 E-value=8.1 Score=26.90 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=18.6
Q ss_pred cceeEEEEcCCccEEEEEecC---cEEEEE
Q 002753 68 GENLQAVWSPDTKLIAVVTSS---LYLHIF 94 (884)
Q Consensus 68 G~~~~v~wsPDg~~Lav~t~~---g~l~l~ 94 (884)
+......|||||+.|+-++.. |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 556789999999988877654 444454
No 406
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=69.67 E-value=19 Score=42.51 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=30.0
Q ss_pred CcCeEEEEECC----CCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 002753 307 TGPVSCIAWTP----DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (884)
Q Consensus 307 ~~~V~~l~~sp----dg~~Lasg~~dg~v~vW~~~~~~l~~tl~ 346 (884)
.+.+.+++.++ +..+|++-+.|+.+|+||+.+++++.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 214 SSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 34566677777 77899999999999999999999876653
No 407
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=66.79 E-value=60 Score=38.41 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=45.2
Q ss_pred ceEEEEEecCeEEEEE--ccCeEEEEecCCceeEEEEEeeChHhhhhccceeEEEEc--CCccEEEEEecCcEEEEEEE
Q 002753 22 QQIIYFKVNNGLLLIA--SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWS--PDTKLIAVVTSSLYLHIFKV 96 (884)
Q Consensus 22 ~~vv~fspdg~lla~~--t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~ws--PDg~~Lav~t~~g~l~l~~l 96 (884)
-..+..|.-+ .+|++ +..++.|||.+ ... ..++ +.+.+.+.+.++.|. |||+.+.+.+-.++|.+|.-
T Consensus 32 ~~li~gss~~-k~a~V~~~~~~LtIWD~~-~~~--lE~~---~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIK-KIAVVDSSRSELTIWDTR-SGV--LEYE---ESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecccC-cEEEEECCCCEEEEEEcC-CcE--EEEe---eeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 3445566644 44555 35689999995 544 2222 334567889999884 89987777667778988843
No 408
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=66.75 E-value=2e+02 Score=31.39 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=16.5
Q ss_pred cceeecc---eeEEEecCCceEEEEecC
Q 002753 367 EPLMSGT---SMMQWDEYGYRLYAIEEG 391 (884)
Q Consensus 367 ~~l~sg~---~i~~W~~~~~~l~~~~~~ 391 (884)
+.++.|. .-+.|++.++++|..-.+
T Consensus 174 ~i~A~GlRN~~~~~~d~~tg~l~~~d~G 201 (331)
T PF07995_consen 174 EIYAYGLRNPFGLAFDPNTGRLWAADNG 201 (331)
T ss_dssp TEEEE--SEEEEEEEETTTTEEEEEEE-
T ss_pred EEEEeCCCccccEEEECCCCcEEEEccC
Confidence 5566665 677888888888877654
No 409
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.61 E-value=25 Score=35.88 Aligned_cols=74 Identities=9% Similarity=0.043 Sum_probs=49.1
Q ss_pred EcCCCCEEEEEecCCeEEEEEccCCCcceEEE-eeccCCC-----CCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEecc
Q 002753 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTV-SLYDWGY-----SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (884)
Q Consensus 264 ~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l-~~~~~~~-----~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~ 337 (884)
+..+++++.+-+.+|.+++||+.+ .+.+..- ....+-. .......|..+..+.+|.-+++-+. |....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~-~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKK-GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCC-CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccc
Confidence 345778888889999999999987 4332211 1000000 0024567899999999998877664 788888876
Q ss_pred CC
Q 002753 338 GC 339 (884)
Q Consensus 338 ~~ 339 (884)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 44
No 410
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=65.88 E-value=2.6e+02 Score=32.41 Aligned_cols=76 Identities=11% Similarity=-0.034 Sum_probs=41.3
Q ss_pred CCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeE--EEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEe
Q 002753 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS--CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (884)
Q Consensus 268 ~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~--~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl 345 (884)
+..+.+++.+|.+.-.|..+ ++.+-....... ... ....+. .++.. ++..+..+..|+.+.-+|..+++...+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~t-G~~~W~~~~~~~-~~~-~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAAT-GKVLWRYDPKLP-ADR-GCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCC-ChhhceeCCCCC-ccc-cccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 34455667788888888877 544332222100 000 000010 01111 2256667778899999999888877665
Q ss_pred cc
Q 002753 346 RQ 347 (884)
Q Consensus 346 ~~ 347 (884)
..
T Consensus 137 ~~ 138 (488)
T cd00216 137 GN 138 (488)
T ss_pred cC
Confidence 43
No 411
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=65.57 E-value=13 Score=25.79 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=16.8
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC
Q 002753 450 SQNWPVQHVAASKDGMFLAVAGLH 473 (884)
Q Consensus 450 ~~~~~I~~va~S~dG~~lavag~d 473 (884)
.....-...+|||||++|+-++..
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred cCCccccCEEEecCCCEEEEEecC
Confidence 344567789999999988876654
No 412
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=64.73 E-value=2.1e+02 Score=30.88 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=18.2
Q ss_pred EEEEEccCCCEEEEEeCCc-eE-EEEcc
Q 002753 456 QHVAASKDGMFLAVAGLHG-LI-LYDIR 481 (884)
Q Consensus 456 ~~va~S~dG~~lavag~dg-~i-iwd~~ 481 (884)
-.++...+|.+-+++..+| .+ .|+..
T Consensus 216 DG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 216 DGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CceEEeCCCCEEEecccCCceEEEECCC
Confidence 4577888888776666654 45 88877
No 413
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.96 E-value=2e+02 Score=30.33 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=34.8
Q ss_pred EEEcCCCCEEEEEecCC-eEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEe
Q 002753 262 ASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (884)
Q Consensus 262 va~sp~~~~la~g~~dg-~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~ 335 (884)
++.|.+..+++..+-.| ...+||.++ +..+..-.. ..+.-.-+.+.-+++.+.+|.+..++
T Consensus 285 iA~n~~~glV~lTSP~GN~~vi~da~t-G~vv~~a~l------------~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 285 IAANRRDGLVALTSPRGNRAVIWDAAT-GAVVSEAAL------------PDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred eeecccCCeEEEecCCCCeEEEEEcCC-CcEEecccc------------cccccceeccCceEEecCCceEEecc
Confidence 78887777777666555 567899987 554432222 11111223444455555556666653
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=63.73 E-value=1.9e+02 Score=32.10 Aligned_cols=52 Identities=17% Similarity=0.097 Sum_probs=26.8
Q ss_pred CeEEEEECCCCCEEEEEEcCCcEEEEeccCC--------eeEEEeccc---cccceeeeeecCCC
Q 002753 309 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--------RLMSTIRQI---SLSSISSPIVKPNQ 362 (884)
Q Consensus 309 ~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~--------~l~~tl~~~---~~~~v~s~~~s~~~ 362 (884)
....+++.++| ++++ ..+.-+++.+..+. .++..+... .....+.+++.|++
T Consensus 73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG 135 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG 135 (367)
T ss_pred CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC
Confidence 34779999999 4444 44343344455331 122223221 12345677777776
No 415
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.12 E-value=20 Score=39.58 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=48.5
Q ss_pred EEEEecCeEEEEEccCeEEEEecCCce--eEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 002753 25 IYFKVNNGLLLIASPCHIELWSSSQHK--VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (884)
Q Consensus 25 v~fspdg~lla~~t~~~v~IW~~~~~~--~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~ 100 (884)
+.|---++.+...+.+.+.=|-+..|. +++... -...|++.++.||||.+.|||+-+++.+.+++-..+.
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfd------m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFD------MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCCCCCCceee------ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 556544555555666777788774332 333321 1235899999999999999999999999998875443
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=62.87 E-value=1.5e+02 Score=32.79 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=31.9
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEccCCCc---ceEEEeeccCCCC-CCCCcCeEEEEECCCCCEEEEEE
Q 002753 261 CASIAPEQQILAVGTRRGVVELYDLAESAS---LIRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGW 326 (884)
Q Consensus 261 ~va~sp~~~~la~g~~dg~v~lw~~~~~~~---~~~~l~~~~~~~~-~~h~~~V~~l~~spdg~~Lasg~ 326 (884)
.+++.+++ ++++ +.+...++.+.+..+. ....+- ..++.. ..+......++|.|||.+.++-+
T Consensus 76 Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~-~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 76 GLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLL-SGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred ceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEE-EccCCCCCcccccccCceECCCCCEEEecc
Confidence 37888888 5554 4444334445432111 111111 112111 11234467899999999776655
No 417
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=61.82 E-value=3.2e+02 Score=33.01 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=49.0
Q ss_pred cEE-EEEc--CCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCC-----C-EEEEEEcCC
Q 002753 259 AVC-ASIA--PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-----S-AFAVGWKSR 329 (884)
Q Consensus 259 ~v~-va~s--p~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg-----~-~Lasg~~dg 329 (884)
... ++++ ...++||+++....|.||-............ +..|..-|-+|+|-++. . .+++++-.|
T Consensus 165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~------s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G 238 (717)
T PF08728_consen 165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP------SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISG 238 (717)
T ss_pred ceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc------ccccccCCCeeEeecCCCCCccceEEEEEeccC
Confidence 344 8888 8899999999888999887754111111000 11155668889997743 2 788888889
Q ss_pred cEEEEec
Q 002753 330 GLTVWSV 336 (884)
Q Consensus 330 ~v~vW~~ 336 (884)
.+.+|++
T Consensus 239 ~v~~~~I 245 (717)
T PF08728_consen 239 EVWTFKI 245 (717)
T ss_pred cEEEEEE
Confidence 9988887
No 418
>PRK10115 protease 2; Provisional
Probab=61.54 E-value=3.7e+02 Score=32.72 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=29.8
Q ss_pred EEEcc-CCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 002753 477 LYDIR-QKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 477 iwd~~-s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~ 528 (884)
..++. .++|+.+-.+. .+..+.++.|.++.+++... ..+...+.+++.
T Consensus 297 ~~~~~~~~~~~~l~~~~--~~~~i~~~~~~~~~l~~~~~--~~g~~~l~~~~~ 345 (686)
T PRK10115 297 RTRVRDEQQWEELIPPR--ENIMLEGFTLFTDWLVVEER--QRGLTSLRQINR 345 (686)
T ss_pred EecCCCcccCeEEECCC--CCCEEEEEEEECCEEEEEEE--eCCEEEEEEEcC
Confidence 44555 57787653321 22356688999998887633 355666777764
No 419
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=61.33 E-value=1.1e+02 Score=32.87 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=46.9
Q ss_pred EEEcCCCCEEEEEec-CCeEEEEEccCCCcce---EEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCC-cEEEEec
Q 002753 262 ASIAPEQQILAVGTR-RGVVELYDLAESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSV 336 (884)
Q Consensus 262 va~sp~~~~la~g~~-dg~v~lw~~~~~~~~~---~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg-~v~vW~~ 336 (884)
++||||++.+...-. .+.|.-|+.+.....+ +.... .....|.--.++.-.||++-+++..+| .|.+|+.
T Consensus 168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-----~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-----FDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-----ccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 899999987766544 4777777776211111 10111 001345555577777888775554444 8999998
Q ss_pred cCCeeEEEecc
Q 002753 337 SGCRLMSTIRQ 347 (884)
Q Consensus 337 ~~~~l~~tl~~ 347 (884)
. ++++....-
T Consensus 243 d-G~l~~~i~l 252 (307)
T COG3386 243 D-GKLLGEIKL 252 (307)
T ss_pred C-CcEEEEEEC
Confidence 8 555655543
No 420
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=60.82 E-value=2.4e+02 Score=30.30 Aligned_cols=118 Identities=11% Similarity=0.177 Sum_probs=56.9
Q ss_pred CcEE-EEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 002753 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 258 ~~v~-va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~ 336 (884)
..+. +..+++|+++|++....-..-|+-.. ........ .....|.+|.|+|||.+.+++ ..|.++.=+.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--~~w~~~~r-------~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--TTWQPHNR-------NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE---------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCC--ccceEEcc-------CccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 4455 77889999999976655555665432 22222221 146789999999999887765 5465655551
Q ss_pred -cCCeeEEE--ecc-ccccceeeeeecCCCCCCccceeecc-eeEEEecCCceEEEEe
Q 002753 337 -SGCRLMST--IRQ-ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE 389 (884)
Q Consensus 337 -~~~~l~~t--l~~-~~~~~v~s~~~s~~~~~~~~~l~sg~-~i~~W~~~~~~l~~~~ 389 (884)
........ ... -..-.+..+++.++. +.++.|. -.++-+.++++-|..-
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~----~~wa~gg~G~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPN----EIWAVGGSGTLLVSTDGGKTWQKD 268 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-----EEEEESTT-EEEESSTTSS-EE-
T ss_pred CCCccccccccCCcccCceeeEEEEecCCC----CEEEEeCCccEEEeCCCCccceEC
Confidence 22211111 000 001235667777766 6666555 3455556666666554
No 421
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=60.56 E-value=2.5e+02 Score=31.54 Aligned_cols=112 Identities=12% Similarity=0.129 Sum_probs=63.5
Q ss_pred EEEcCCCCEEEEEecCCeEEEEEccCCCcc-eEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCe
Q 002753 262 ASIAPEQQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (884)
Q Consensus 262 va~sp~~~~la~g~~dg~v~lw~~~~~~~~-~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~ 340 (884)
+..++++.++++|......+-||- +.. ...... .....+..+.|.+||..++++.. |+ .+|+..+++
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~---G~~~W~~~~~-------~~~~~l~~v~~~~dg~l~l~g~~-G~-l~~S~d~G~ 311 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEP---GQPYWQPHNR-------ASARRIQNMGWRADGGLWLLTRG-GG-LYVSKGTGL 311 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCC---CCcceEEecC-------CCccceeeeeEcCCCCEEEEeCC-ce-EEEecCCCC
Confidence 567788888888665433333332 222 122222 13456899999999998877743 44 456666554
Q ss_pred e-----EEEeccc-cccceeeeeecCCCCCCccceeecce-eEEEecCCceEEEEe
Q 002753 341 L-----MSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGTS-MMQWDEYGYRLYAIE 389 (884)
Q Consensus 341 l-----~~tl~~~-~~~~v~s~~~s~~~~~~~~~l~sg~~-i~~W~~~~~~l~~~~ 389 (884)
. +...... ....+.++.+.+++ ..++.|.. .+.....+++-|...
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~----~~~a~G~~G~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKK----EAWAAGGSGILLRSTDGGKSWKRD 363 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCC----cEEEEECCCcEEEeCCCCcceeEc
Confidence 2 2222211 12246777787776 66776652 344445566666553
No 422
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.65 E-value=54 Score=37.08 Aligned_cols=77 Identities=10% Similarity=0.142 Sum_probs=47.3
Q ss_pred EEEEecCeEEEEEccCeEEEEecCCc---------e--eEEEEEeeChHhh---hhccceeEEEEcCCc---cEEEEEec
Q 002753 25 IYFKVNNGLLLIASPCHIELWSSSQH---------K--VRLGKYKRDSESV---QREGENLQAVWSPDT---KLIAVVTS 87 (884)
Q Consensus 25 v~fspdg~lla~~t~~~v~IW~~~~~---------~--~~l~~~~r~~~sl---~~~G~~~~v~wsPDg---~~Lav~t~ 87 (884)
|..|+.|...|.++.+.|.|-...+. + +.++...--.+.+ ..+=....++|.|++ ..|.+-++
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~s 188 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTS 188 (741)
T ss_pred EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEec
Confidence 45678899998888777777555111 1 1111110000000 012234578899998 68999999
Q ss_pred CcEEEEEEEEecCc
Q 002753 88 SLYLHIFKVQITEK 101 (884)
Q Consensus 88 ~g~l~l~~l~~~~~ 101 (884)
|+.+++|++...+.
T Consensus 189 dnviRiy~lS~~te 202 (741)
T KOG4460|consen 189 DNVIRIYSLSEPTE 202 (741)
T ss_pred CcEEEEEecCCcch
Confidence 99999999975554
No 423
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=58.38 E-value=37 Score=38.14 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=51.3
Q ss_pred cEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC-------------C-CCEEEE
Q 002753 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-------------D-NSAFAV 324 (884)
Q Consensus 259 ~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp-------------d-g~~Las 324 (884)
..++..+|++++.|+...=|.|.|+|+.. +..++.+++... +.-+.+....-.. . ..+|+.
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRd----Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRD----AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCcc----ceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 34489999999999876668999999988 677777776321 1111111111000 0 123333
Q ss_pred -EEcCCcEEEEeccCCeeEEEec
Q 002753 325 -GWKSRGLTVWSVSGCRLMSTIR 346 (884)
Q Consensus 325 -g~~dg~v~vW~~~~~~l~~tl~ 346 (884)
+-.-|.+.||++..+..+..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 4456889999998877665553
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=57.15 E-value=3.6e+02 Score=31.17 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=37.1
Q ss_pred ccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 002753 461 SKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 461 S~dG~~lavag~dg~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~ 528 (884)
.-+|+..++|| .. .||..+++|.........+. ......-.+.++++|++........+.+|+.
T Consensus 405 ~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~-~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 405 VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRD-NPELIIVDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcc-ccEEEEECCEEEEECCcCCCcccceEEEEEC
Confidence 44677666664 46 89999999997754433221 1222333456777776643222345566654
No 425
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.98 E-value=92 Score=35.42 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=61.8
Q ss_pred cCCCCcEEEEEcCCCC-------EEEEEecCCeEEEEEccCCCc-ceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEE
Q 002753 254 LGSGDAVCASIAPEQQ-------ILAVGTRRGVVELYDLAESAS-LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (884)
Q Consensus 254 ~~h~~~v~va~sp~~~-------~la~g~~dg~v~lw~~~~~~~-~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 325 (884)
.-+.+...+.+.|+++ .-.+|-.|..|.=||.+-.+. .+..-+++++. ....-.|.+=.-+| ++|+|
T Consensus 373 k~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~----~k~nFsc~aTT~sG-~Ivvg 447 (644)
T KOG2395|consen 373 KFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS----TKNNFSCFATTESG-YIVVG 447 (644)
T ss_pred eccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc----cccccceeeecCCc-eEEEe
Confidence 3444522377777643 123566777888888875333 22233333321 12234555555566 68899
Q ss_pred EcCCcEEEEeccCCeeEEEeccccccceeeeeecCCC
Q 002753 326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (884)
Q Consensus 326 ~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~ 362 (884)
+.+|.||+||-.+.+-...+.+- ..+|..+..+.+|
T Consensus 448 S~~GdIRLYdri~~~AKTAlPgL-G~~I~hVdvtadG 483 (644)
T KOG2395|consen 448 SLKGDIRLYDRIGRRAKTALPGL-GDAIKHVDVTADG 483 (644)
T ss_pred ecCCcEEeehhhhhhhhhccccc-CCceeeEEeeccC
Confidence 99999999998665555556655 3467777777776
No 426
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=55.87 E-value=1.3e+02 Score=35.79 Aligned_cols=66 Identities=23% Similarity=0.315 Sum_probs=46.9
Q ss_pred cCCCEEEEEeCCc-----eE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCC-CeEEEEEeeC
Q 002753 462 KDGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSS-NTYELLFYPR 528 (884)
Q Consensus 462 ~dG~~lavag~dg-----~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~-~~~elr~y~~ 528 (884)
-+|...|+||.|| .+ .||..+.+|........ .........+.+.++++|+..... .-..+.+|+.
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcC
Confidence 4899999999997 46 89999999998765443 222334456677888888765544 4466777765
No 427
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=55.83 E-value=18 Score=23.20 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=17.7
Q ss_pred eEEEEcCCccEEEEEecCcEEEEEE
Q 002753 71 LQAVWSPDTKLIAVVTSSLYLHIFK 95 (884)
Q Consensus 71 ~~v~wsPDg~~Lav~t~~g~l~l~~ 95 (884)
.+++-+ ...+|++|+.++||+|.
T Consensus 5 ~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 5 EAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred EEEEcc--CCEEEEEeCCCeEEecC
Confidence 445554 35899999999999984
No 428
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=54.92 E-value=3.4e+02 Score=30.23 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=50.2
Q ss_pred EEEEcCCCCEEEEEecC---CeEEEEEccCCCcceEE-EeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC-CcEEEEe
Q 002753 261 CASIAPEQQILAVGTRR---GVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWS 335 (884)
Q Consensus 261 ~va~sp~~~~la~g~~d---g~v~lw~~~~~~~~~~~-l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d-g~v~vW~ 335 (884)
.++++|++..+-+.... +++...|..+ +..... ... -++.-..+..+|+|..+-+.... +.+.+-|
T Consensus 211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~--------~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 211 GIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPV--------GSGAPRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred eEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEecccc--------ccCCCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 38999999865554443 4788877765 333322 111 11134568999999988887544 7888888
Q ss_pred ccCCeeEEEec
Q 002753 336 VSGCRLMSTIR 346 (884)
Q Consensus 336 ~~~~~l~~tl~ 346 (884)
..+..+..+..
T Consensus 282 ~~~~~v~~~~~ 292 (381)
T COG3391 282 GATDRVVKTGP 292 (381)
T ss_pred CCCCceeeeec
Confidence 88777666544
No 429
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=54.21 E-value=5.9e+02 Score=32.78 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=20.0
Q ss_pred eEEEEcCCccEEEEEecCcEEEEEEEEec
Q 002753 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (884)
Q Consensus 71 ~~v~wsPDg~~Lav~t~~g~l~l~~l~~~ 99 (884)
.-++.+|=+-.|++.... .=++|.+..-
T Consensus 410 Yy~AvsPvdgtlyvSdp~-s~qv~rv~sl 437 (1899)
T KOG4659|consen 410 YYIAVSPVDGTLYVSDPL-SKQVWRVSSL 437 (1899)
T ss_pred eEEEecCcCceEEecCCC-cceEEEeccC
Confidence 568889977778876543 4688988643
No 430
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=53.92 E-value=2.5e+02 Score=28.72 Aligned_cols=93 Identities=9% Similarity=0.122 Sum_probs=57.0
Q ss_pred EEEcCCCCEE-EEEecCCeEEEEEccCC-Cc-----ceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEE
Q 002753 262 ASIAPEQQIL-AVGTRRGVVELYDLAES-AS-----LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (884)
Q Consensus 262 va~sp~~~~l-a~g~~dg~v~lw~~~~~-~~-----~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW 334 (884)
++|+.+.+.+ .+-+.+-+|.-||.+-. +. .+..++..+. .++..+ -.++...+|.+.++.+.-++|...
T Consensus 163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~---~e~~~P-DGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQP---FESLEP-DGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCC---cCCCCC-CcceEccCCcEEEEEecCcEEEEE
Confidence 5676665544 45566778888885432 21 1222222111 011111 224445688899999988999999
Q ss_pred eccCCeeEEEeccccccceeeeeec
Q 002753 335 SVSGCRLMSTIRQISLSSISSPIVK 359 (884)
Q Consensus 335 ~~~~~~l~~tl~~~~~~~v~s~~~s 359 (884)
|..+|+++.++.-. ...+++++|-
T Consensus 239 dp~tGK~L~eiklP-t~qitsccFg 262 (310)
T KOG4499|consen 239 DPTTGKILLEIKLP-TPQITSCCFG 262 (310)
T ss_pred CCCCCcEEEEEEcC-CCceEEEEec
Confidence 99999988887765 5567777763
No 431
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=52.76 E-value=1.9e+02 Score=32.99 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=14.9
Q ss_pred CCCcCeEEEEECCCCCEEEEEEc
Q 002753 305 DDTGPVSCIAWTPDNSAFAVGWK 327 (884)
Q Consensus 305 ~h~~~V~~l~~spdg~~Lasg~~ 327 (884)
.|.+ ..|+|.|||++.++-++
T Consensus 145 ~H~G--grI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 145 DHNG--GRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CcCC--ceEEECCCCcEEEEECC
Confidence 4655 45789999987766554
No 432
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=52.70 E-value=5.3e+02 Score=31.78 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.6
Q ss_pred CCC---EEEEEeCCceE-EEEccCCc
Q 002753 463 DGM---FLAVAGLHGLI-LYDIRQKK 484 (884)
Q Consensus 463 dG~---~lavag~dg~i-iwd~~s~~ 484 (884)
+|+ .++.++++|.+ +.|..+|+
T Consensus 455 ~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 455 DGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred CCcEeeEEEEECCCCEEEEEECCCCC
Confidence 664 89999999999 99999997
No 433
>PHA02790 Kelch-like protein; Provisional
Probab=52.26 E-value=3.8e+02 Score=30.99 Aligned_cols=27 Identities=26% Similarity=0.648 Sum_probs=21.5
Q ss_pred cCCCEEEEEeCC-----ceE-EEEccCCcEEEe
Q 002753 462 KDGMFLAVAGLH-----GLI-LYDIRQKKWRVF 488 (884)
Q Consensus 462 ~dG~~lavag~d-----g~i-iwd~~s~~w~~f 488 (884)
-+|+..++||.+ ..+ .||..+++|...
T Consensus 445 ~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 445 VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 478888888865 356 999999999764
No 434
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.98 E-value=58 Score=33.16 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=29.2
Q ss_pred EEecCCccEEEEccCCEEEEEEcCCeEEEEEEE
Q 002753 539 RKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (884)
Q Consensus 539 ~~~~~~~~~~~~~~~~~llv~~~~~~i~i~~~~ 571 (884)
...++++++.+.+.++++++.|.+|.+++|++.
T Consensus 8 ~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 8 PIVLGSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred cEecCCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 345778889999999999999999999999986
No 435
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=50.65 E-value=2.1e+02 Score=26.54 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=44.9
Q ss_pred ccccCCCceEEEEEcc-----CCCEEEEEeCCceEEEEccCCcEEEecCccceee--eEEEEEEEeCCEEEEEEEecCCC
Q 002753 447 SYISQNWPVQHVAASK-----DGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQK--IQSKGLLWLGKIIVVCNYIDSSN 519 (884)
Q Consensus 447 ~~~~~~~~I~~va~S~-----dG~~lavag~dg~iiwd~~s~~w~~f~~~~~e~~--~~v~~~~W~~~~lv~~~~~~~~~ 519 (884)
.+++-+..|++++--+ +...|.+|+...++.||+..+. ..|..+.++.- +.+..+.+...-++.+ .+
T Consensus 42 ~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~-d~Fyke~~DGvn~i~~g~~~~~~~~l~iv-----GG 115 (136)
T PF14781_consen 42 SFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNS-DLFYKEVPDGVNAIVIGKLGDIPSPLVIV-----GG 115 (136)
T ss_pred eEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCc-hhhhhhCccceeEEEEEecCCCCCcEEEE-----Cc
Confidence 3445556677776543 4678999999998899998765 45554444331 2233466654444433 23
Q ss_pred eEEEEEeeC
Q 002753 520 TYELLFYPR 528 (884)
Q Consensus 520 ~~elr~y~~ 528 (884)
.-.|+-|+.
T Consensus 116 ncsi~Gfd~ 124 (136)
T PF14781_consen 116 NCSIQGFDY 124 (136)
T ss_pred eEEEEEeCC
Confidence 345555544
No 436
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.88 E-value=1.4e+02 Score=33.99 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=26.6
Q ss_pred CeEEEEECCCC---CEEEEEEcCCcEEEEeccCCeeE
Q 002753 309 PVSCIAWTPDN---SAFAVGWKSRGLTVWSVSGCRLM 342 (884)
Q Consensus 309 ~V~~l~~spdg---~~Lasg~~dg~v~vW~~~~~~l~ 342 (884)
.+..++|.|+. ..|..-..|+.+|+||...-+.+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 46778999975 57777778899999999765433
No 437
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=49.80 E-value=4.3e+02 Score=29.86 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=47.4
Q ss_pred cceeEEEecCCceEEEEecCCc-ce-EEEEee----cc-eeecccCCCCceeeeeeecCCeEEEEecCCCCceeEE---E
Q 002753 372 GTSMMQWDEYGYRLYAIEEGSS-ER-VLIFSF----GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL---H 441 (884)
Q Consensus 372 g~~i~~W~~~~~~l~~~~~~~~-~~-v~~~~~----~~-~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~---~ 441 (884)
|.++.+|+....++.+++.-.. +. .+.++| .+ .-.+++. -+-.+|.+...++ -.|+ .
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~------------g~W~a~kV 287 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDD------------GEWAAEKV 287 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ET------------TEEEEEEE
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe-ccceEEEEEEcCC------------CCeeeeEE
Confidence 3488999999999998875433 22 255555 11 1122221 1223344333211 1352 3
Q ss_pred eecccccc-------------cCCCceEEEEEccCCCEEEEEeC-CceE-EEEccCC
Q 002753 442 LNLPVSYI-------------SQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQK 483 (884)
Q Consensus 442 ~~~p~~~~-------------~~~~~I~~va~S~dG~~lavag~-dg~i-iwd~~s~ 483 (884)
+++|..-. .-..-|+.+.+|.|.++|.+++. +|.+ .||+..-
T Consensus 288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred EECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 44443211 11223788999999999999885 6778 9998653
No 438
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=48.10 E-value=1.8e+02 Score=30.81 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=37.0
Q ss_pred ceEEEEccCCcEEEecCccceeeeEEEEEEEe-CCEEEEEEE-ecCC-CeEEEEEeeCC
Q 002753 474 GLILYDIRQKKWRVFGDITQEQKIQSKGLLWL-GKIIVVCNY-IDSS-NTYELLFYPRY 529 (884)
Q Consensus 474 g~iiwd~~s~~w~~f~~~~~e~~~~v~~~~W~-~~~lv~~~~-~~~~-~~~elr~y~~~ 529 (884)
++.+||..+.+|..+++. -...|..|.|. ++.+++++. ...+ ....+..|+..
T Consensus 17 ~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~ 72 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFK 72 (281)
T ss_pred EEEEEECCCCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecC
Confidence 444999999999998765 33468899997 666655544 3333 45677778764
No 439
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=47.06 E-value=5.2e+02 Score=31.97 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=51.6
Q ss_pred EEEEcCC-CCEEEEEecCCeEEEEEccCCCc---ceEEEeeccCCC---CCCCCcCeEEEEECCCCCEEEEEEcCCcEEE
Q 002753 261 CASIAPE-QQILAVGTRRGVVELYDLAESAS---LIRTVSLYDWGY---SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (884)
Q Consensus 261 ~va~sp~-~~~la~g~~dg~v~lw~~~~~~~---~~~~l~~~~~~~---~~~h~~~V~~l~~spdg~~Lasg~~dg~v~v 333 (884)
-++|||. .+.+|+-...|...||++....+ ....+.....+. .......-..+.|.++-..|+++.. ..+.+
T Consensus 150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~ 228 (765)
T PF10214_consen 150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLML 228 (765)
T ss_pred eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEE
Confidence 3999994 57899999999999999932011 011111111110 1111233457899999888888887 78999
Q ss_pred EeccCCee
Q 002753 334 WSVSGCRL 341 (884)
Q Consensus 334 W~~~~~~l 341 (884)
.|+.++..
T Consensus 229 ~d~~~~~~ 236 (765)
T PF10214_consen 229 IDFESNWQ 236 (765)
T ss_pred EECCCCCc
Confidence 99987754
No 440
>PHA02713 hypothetical protein; Provisional
Probab=45.83 E-value=5.7e+02 Score=30.19 Aligned_cols=64 Identities=11% Similarity=0.160 Sum_probs=38.2
Q ss_pred EccCCCEEEEEeCCc------eE-EEEccC-CcEEEecCccceeeeEEEEEEE-eCCEEEEEEEecCCCeEEEEEeeC
Q 002753 460 ASKDGMFLAVAGLHG------LI-LYDIRQ-KKWRVFGDITQEQKIQSKGLLW-LGKIIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 460 ~S~dG~~lavag~dg------~i-iwd~~s-~~w~~f~~~~~e~~~~v~~~~W-~~~~lv~~~~~~~~~~~elr~y~~ 528 (884)
..-+|+..++||.++ .+ .||..+ ++|.........+ ...++.- .+.++++|++.. ...+.+|+.
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--~~~~~~~~~~~iyv~Gg~~~---~~~~e~yd~ 532 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--SALHTILHDNTIMMLHCYES---YMLQDTFNV 532 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--ccceeEEECCEEEEEeeecc---eeehhhcCc
Confidence 344678778887652 45 899999 8999775543322 2234444 455667776643 223455554
No 441
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.43 E-value=1.2e+02 Score=30.95 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=37.4
Q ss_pred EEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECC
Q 002753 263 SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP 317 (884)
Q Consensus 263 a~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~sp 317 (884)
++..+|.+.++....|+|.-.|..+ ++.+..++. .+..|+|++|--
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~eikl--------Pt~qitsccFgG 263 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTT-GKILLEIKL--------PTPQITSCCFGG 263 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCC-CcEEEEEEc--------CCCceEEEEecC
Confidence 3345788888878888999999888 888888888 688899999953
No 442
>PHA03098 kelch-like protein; Provisional
Probab=43.99 E-value=3.5e+02 Score=31.64 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=37.5
Q ss_pred EccCCCEEEEEeCCc--------eE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 002753 460 ASKDGMFLAVAGLHG--------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (884)
Q Consensus 460 ~S~dG~~lavag~dg--------~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~~~~~~~elr~y~~ 528 (884)
..-+++..++||.++ .+ .||..+++|.........+ .........+.++++|+.........+.+|+.
T Consensus 434 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 434 IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCIFNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEEECCEEEEEcCCcCCcccceeEEEeC
Confidence 334677777777532 26 9999999999865432221 11111222345556665543332345666654
No 443
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=43.75 E-value=8.1e+02 Score=31.34 Aligned_cols=33 Identities=18% Similarity=0.494 Sum_probs=21.9
Q ss_pred Cccccccce-eccCCCCCCCCCceEEEEEecCeEEEEEc
Q 002753 1 MYMAYGWPQ-VIPLEQGLCPSSQQIIYFKVNNGLLLIAS 38 (884)
Q Consensus 1 m~~~~g~p~-~~~~~~~~~~~~~~vv~fspdg~lla~~t 38 (884)
|++.++||- -+|++-. ..+ +.+.+..++.++.+
T Consensus 939 ~~Ydn~wPvkkIpl~~T----~~~-vvYh~e~~vy~v~t 972 (1366)
T KOG1896|consen 939 LSYDNKWPVKKIPLRKT----PHQ-VVYHYEKKVYAVIT 972 (1366)
T ss_pred cccCCCCcccccccccc----hhh-eeeeccceEEEEEE
Confidence 688999998 8898632 233 33556666666655
No 444
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=43.14 E-value=6.9e+02 Score=30.33 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=43.9
Q ss_pred EEEcCCCCEEEEEecCCe-----EEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEec
Q 002753 262 ASIAPEQQILAVGTRRGV-----VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (884)
Q Consensus 262 va~sp~~~~la~g~~dg~-----v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~ 336 (884)
++|-|+|+.+|+-..||. |..+.-+ ++.+ .++....+-...+..++|.-....+|++-. +.+++|..
T Consensus 252 LSWkpqgS~~ati~td~~~~S~~ViFfErN---GLrH----Gef~lr~~~dEk~~~~~wn~~s~vlav~~~-n~~~lwtt 323 (1243)
T COG5290 252 LSWKPQGSKYATIGTDGCSTSESVIFFERN---GLRH----GEFDLRVGCDEKAFLENWNLLSTVLAVAEG-NLLKLWTT 323 (1243)
T ss_pred cccccCCceeeeeccCCCCCcceEEEEccC---Cccc----CCccccCCchhhhhhhhhhHHHHHHHHhhc-ceEEEEEc
Confidence 789999999998775542 3333221 1110 011111123455777889888888888766 78999987
Q ss_pred cCCe
Q 002753 337 SGCR 340 (884)
Q Consensus 337 ~~~~ 340 (884)
.+-.
T Consensus 324 kNyh 327 (1243)
T COG5290 324 KNYH 327 (1243)
T ss_pred cceE
Confidence 6543
No 445
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.63 E-value=4.1e+02 Score=27.62 Aligned_cols=19 Identities=32% Similarity=0.551 Sum_probs=15.5
Q ss_pred CCeEEEEecCCcEEEEecC
Q 002753 142 NKHMLLGLSDGSLYSISWK 160 (884)
Q Consensus 142 ~~~llv~~~~g~i~~~~w~ 160 (884)
++.+++|..+|.++++..+
T Consensus 63 gdfVV~GCy~g~lYfl~~~ 81 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVK 81 (354)
T ss_pred CCEEEEEEccCcEEEEEec
Confidence 6779999999999887654
No 446
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=41.88 E-value=1e+02 Score=30.98 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=36.4
Q ss_pred CEEEEEecCCeEEEEEccCC-CcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC
Q 002753 269 QILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (884)
Q Consensus 269 ~~la~g~~dg~v~lw~~~~~-~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d 328 (884)
+.|..+.....|.+|++... .....++.. -+.|..+.++.-|.+|++--++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---------v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---------VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---------hhheeEEEeccccceEEEEEee
Confidence 33433356678999999842 233445543 5889999999999999997664
No 447
>PRK10115 protease 2; Provisional
Probab=41.45 E-value=7.4e+02 Score=30.19 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=41.2
Q ss_pred EEEcCCCCEEEEEecC-----CeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcC------Cc
Q 002753 262 ASIAPEQQILAVGTRR-----GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS------RG 330 (884)
Q Consensus 262 va~sp~~~~la~g~~d-----g~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~d------g~ 330 (884)
+.+||++++||.+... -++++-|+.+ +..+... ..+.-..++|++||+.|+-...+ ..
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-g~~l~~~----------i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLET-GNWYPEL----------LDNVEPSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCC-CCCCCcc----------ccCcceEEEEeeCCCEEEEEEecCCCCCCCE
Confidence 7889999999876432 3577777765 4322111 11111459999999877666543 24
Q ss_pred EEEEeccCC
Q 002753 331 LTVWSVSGC 339 (884)
Q Consensus 331 v~vW~~~~~ 339 (884)
+..+++.++
T Consensus 201 v~~h~lgt~ 209 (686)
T PRK10115 201 VWRHTIGTP 209 (686)
T ss_pred EEEEECCCC
Confidence 566666655
No 448
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=40.89 E-value=5.1e+02 Score=28.19 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=37.4
Q ss_pred CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcE
Q 002753 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (884)
Q Consensus 267 ~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v 331 (884)
++++++.....+.|....+++.++....-... .+..+.+..+++.|||.+.++-..+|.|
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-----GGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-----TTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEcc-----ccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 45577766666788777776522322211110 1144589999999999999988877776
No 449
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=40.75 E-value=1e+02 Score=23.72 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=30.9
Q ss_pred EEEEcCCcEEEEeecCCccceeeecccccccCCCCcEEEEEcCCCCEEEEEecCCeEEE
Q 002753 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~~h~~~v~va~sp~~~~la~g~~dg~v~l 282 (884)
+++-||||+++.+..... .+..+..-+.++|||.+=.+-+.+|.+.+
T Consensus 6 ~~~q~DGkIlv~G~~~~~------------~~~~~~~l~Rln~DGsLDttFg~~G~v~~ 52 (55)
T TIGR02608 6 VAVQSDGKILVAGYVDNS------------SGNNDFVLARLNADGSLDTTFGTGGKVTF 52 (55)
T ss_pred EEECCCCcEEEEEEeecC------------CCcccEEEEEECCCCCccCCcCCCcEEEE
Confidence 456789999988764311 01123334788999988877777887654
No 450
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=40.65 E-value=1.4e+02 Score=35.28 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=27.1
Q ss_pred EEEcC----CCCEEEEEecCCeEEEEEccCCCcceEEEee
Q 002753 262 ASIAP----EQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (884)
Q Consensus 262 va~sp----~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~ 297 (884)
.++++ +..++++-+.|+++|+||+.+ +.++.+...
T Consensus 220 ~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t-~~~~~~~~~ 258 (547)
T PF11715_consen 220 LAVSSSEINDDTFLFTLSRDHTLRIWSLET-GQCLATIDL 258 (547)
T ss_dssp EEE-----ETTTEEEEEETTSEEEEEETTT-TCEEEEEET
T ss_pred EEEecceeCCCCEEEEEeCCCeEEEEECCC-CeEEEEecc
Confidence 56666 778999999999999999998 777665544
No 451
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=40.50 E-value=5e+02 Score=28.20 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=42.2
Q ss_pred CcEEEEEcCCCCEEEEEecC------CeEEEEEccCCCcceEEEeecc-CC------CCCCCCcCeEEEEECCCCCEEEE
Q 002753 258 DAVCASIAPEQQILAVGTRR------GVVELYDLAESASLIRTVSLYD-WG------YSMDDTGPVSCIAWTPDNSAFAV 324 (884)
Q Consensus 258 ~~v~va~sp~~~~la~g~~d------g~v~lw~~~~~~~~~~~l~~~~-~~------~~~~h~~~V~~l~~spdg~~Las 324 (884)
+.-.+++.+++.++++.-.+ -.|+-++.+ +.....+.... +. .........-+|+++|||+.|.+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 33346777888888876666 677777654 44444442211 10 11224567899999999997766
Q ss_pred EEc
Q 002753 325 GWK 327 (884)
Q Consensus 325 g~~ 327 (884)
+-+
T Consensus 164 ~~E 166 (326)
T PF13449_consen 164 AME 166 (326)
T ss_pred EEC
Confidence 655
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=40.24 E-value=24 Score=42.35 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=44.7
Q ss_pred EeecCCeEEEEecCCcEEEEecCCccccceeeeccCCCCccceeecccCCCCcceecCCCccccccccCCCccEEEEEEc
Q 002753 138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (884)
Q Consensus 138 i~~~~~~llv~~~~g~i~~~~w~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~ 217 (884)
+.++.-++-++.++|.++++.|+.....- +..|...+++|++-
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~l-------------------------------------~rsHs~~~~d~a~~ 233 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRSL-------------------------------------FRSHSQRVTDMAFF 233 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHHH-------------------------------------HHhcCCCcccHHHH
Confidence 45555666677788899888887543211 11122223333221
Q ss_pred C-CcceEEEEEcCCcEEEEeecCCccceeeec
Q 002753 218 L-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (884)
Q Consensus 218 ~-~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~ 248 (884)
. ......-++|||+++++...||.++.|...
T Consensus 234 ~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 234 AEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred hhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 1 112334479999999999999998877653
No 453
>PRK13684 Ycf48-like protein; Provisional
Probab=39.59 E-value=5.4e+02 Score=28.07 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCEEEEEeCCceEEEEccCC-cEEEe
Q 002753 453 WPVQHVAASKDGMFLAVAGLHGLILYDIRQK-KWRVF 488 (884)
Q Consensus 453 ~~I~~va~S~dG~~lavag~dg~iiwd~~s~-~w~~f 488 (884)
..+..+++.++++.+ +++.+|.++.....| .|...
T Consensus 260 ~~l~~v~~~~~~~~~-~~G~~G~v~~S~d~G~tW~~~ 295 (334)
T PRK13684 260 YGYLDLAYRTPGEIW-AGGGNGTLLVSKDGGKTWEKD 295 (334)
T ss_pred cceeeEEEcCCCCEE-EEcCCCeEEEeCCCCCCCeEC
Confidence 457889999988755 566788776666554 57664
No 454
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.50 E-value=5e+02 Score=27.65 Aligned_cols=73 Identities=7% Similarity=0.032 Sum_probs=45.3
Q ss_pred ceEEEEEecCeEEEEEccC-eEEEEecCCceeEEEEEeeChHhhhhccceeEEEEcCCccEEEEEecCcEEEEEEEEecC
Q 002753 22 QQIIYFKVNNGLLLIASPC-HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (884)
Q Consensus 22 ~~vv~fspdg~lla~~t~~-~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~Lav~t~~g~l~l~~l~~~~ 100 (884)
.+-+.++||.+.|.++++. .-.||-. +.+..+.... +..+..--.+.|.-++++.++--.++.+.++.+..+.
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt-~~GdlirtiP-----L~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELT-KEGDLIRTIP-----LTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEe-cCCceEEEec-----ccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 4458899999877777654 4445544 4555444332 1112233367788888777776677788888876543
No 455
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=36.02 E-value=29 Score=42.31 Aligned_cols=95 Identities=18% Similarity=0.104 Sum_probs=64.4
Q ss_pred CCcceeeHHHHHHHHHHcCCHHHHHHHHHHcCCCCCchhhHHHHHHHhhhcccccccccccccCCcccccchhhHHHHHH
Q 002753 754 TPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCN 833 (884)
Q Consensus 754 ~~~~~~~L~~il~~ll~~~~~~~a~~~a~~~~~l~~f~h~LE~lLh~vl~~e~~~~~~~~~~~~~~~~~~~~~~l~~v~~ 833 (884)
..++.++|-++. |...+-.-|.|+-+-++.+.-....++.. |=.-++- ..+-+.+..+
T Consensus 793 s~~~a~~L~q~a---L~~~kwdl~~Elirfl~~i~p~~~~~~~~----~~~~~~~---------------~~~s~d~~~~ 850 (1023)
T KOG2006|consen 793 SVQHALRLLQLA---LEEKKWDLAKELIRFLRSIGPEKIDLPTK----LIATPTL---------------RSPSLDKSLE 850 (1023)
T ss_pred HHHHHHHHHHHH---HHhhcchhHHHHHHHHHhcCcchhhccch----hccCccc---------------cCccchhhhH
Confidence 445666666554 34446677777778888777777766662 1111110 1134567999
Q ss_pred HHHhCchh--------------hhhhhhccccccccchhHhHhhcC-Cchhh
Q 002753 834 FIRNFPEY--------------LNVVVSVARKTDGRHWADLFSAAG-RSTEY 870 (884)
Q Consensus 834 ~i~~~~~~--------------l~ivv~c~RKtE~~~W~~lF~~~g-~p~~l 870 (884)
|++.|++. +++.-+|.||.+++.|+..|.... +|++.
T Consensus 851 f~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 902 (1023)
T KOG2006|consen 851 FIDQRNNVLSEHAILESVHSSMLSIQKNCKRKSGTKGWNHDKTNLKQTPRDR 902 (1023)
T ss_pred HHHhhccccccccccCCccchhhccccccccccCCCCcccchhhcccChHHH
Confidence 99988875 788889999999999999998865 44433
No 456
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=35.65 E-value=73 Score=22.85 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=23.4
Q ss_pred EEccCCCEEEEEeCCc------eE-EEEccCCcEEEe
Q 002753 459 AASKDGMFLAVAGLHG------LI-LYDIRQKKWRVF 488 (884)
Q Consensus 459 a~S~dG~~lavag~dg------~i-iwd~~s~~w~~f 488 (884)
+..-+++..++||.++ .+ .||..+++|+..
T Consensus 7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 4444788888888877 45 899999999865
No 457
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=34.22 E-value=43 Score=28.18 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=26.1
Q ss_pred EEEEccCCCEEEEEeCCceEEEEccCCcEEE
Q 002753 457 HVAASKDGMFLAVAGLHGLILYDIRQKKWRV 487 (884)
Q Consensus 457 ~va~S~dG~~lavag~dg~iiwd~~s~~w~~ 487 (884)
++..+-.|..+|+||.+|-.+|-+.|++-+.
T Consensus 2 ~v~~~~~g~~lAiGG~~g~~~Wfvtt~~v~~ 32 (86)
T PF11090_consen 2 CVTIEHKGRPLAIGGNNGGCLWFVTTNKVKS 32 (86)
T ss_pred eEEEecCCeEEEEccccCCeEEEEECcHHhh
Confidence 5677889999999999987789999887543
No 458
>PF13964 Kelch_6: Kelch motif
Probab=33.28 E-value=56 Score=24.03 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=23.1
Q ss_pred EEccCCCEEEEEeCCc------eE-EEEccCCcEEEec
Q 002753 459 AASKDGMFLAVAGLHG------LI-LYDIRQKKWRVFG 489 (884)
Q Consensus 459 a~S~dG~~lavag~dg------~i-iwd~~s~~w~~f~ 489 (884)
+..-+++..+.||.++ .+ +||+.+++|....
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 3445777778887766 35 8999999998764
No 459
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=33.25 E-value=1.1e+02 Score=21.23 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=22.2
Q ss_pred CCCCEEEEEE-cCCcEEEEeccCCeeEEEec
Q 002753 317 PDNSAFAVGW-KSRGLTVWSVSGCRLMSTIR 346 (884)
Q Consensus 317 pdg~~Lasg~-~dg~v~vW~~~~~~l~~tl~ 346 (884)
|||+.|.++. .++.|.++|..++....++.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 6778666654 56899999998877666654
No 460
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.29 E-value=3.4e+02 Score=34.73 Aligned_cols=110 Identities=22% Similarity=0.416 Sum_probs=56.6
Q ss_pred ccCeEEEEecCCceeEEEEEeeChHhhhhcccee--EEEEcCCccEEEEEecCcEEEEEEEEecCceeecCCCCCCCcee
Q 002753 38 SPCHIELWSSSQHKVRLGKYKRDSESVQREGENL--QAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (884)
Q Consensus 38 t~~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~--~v~wsPDg~~Lav~t~~g~l~l~~l~~~~~~~~~~~~~~~~~~l 115 (884)
-|+.+.+|+.++ ....+.+.-....+-+-|-++ .=.|-|.=+++.+.++--.+.++-+..+...... ....
T Consensus 97 iDn~L~lWny~~-~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~------~~f~ 169 (1311)
T KOG1900|consen 97 IDNNLFLWNYES-DNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL------SIFN 169 (1311)
T ss_pred eCCeEEEEEcCC-CCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc------cccc
Confidence 478899999973 333444332222221111100 0015555566555555556888888654421100 0000
Q ss_pred eeeeeeeeccccccccceeEEEEe-ecCCeEEEEecCCcEEEEecCCc
Q 002753 116 IKISLVLNEQLPFAEKGLSVSNIV-SDNKHMLLGLSDGSLYSISWKGE 162 (884)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~v~~i~-~~~~~llv~~~~g~i~~~~w~~~ 162 (884)
. . ..+..+...|.|+. .++.+++.++.||.++.+.+..+
T Consensus 170 ~------~--~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~ 209 (1311)
T KOG1900|consen 170 T------S--FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAE 209 (1311)
T ss_pred c------c--eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEecc
Confidence 1 1 11233344677776 45678888888888877666543
No 461
>PF05907 DUF866: Eukaryotic protein of unknown function (DUF866); InterPro: IPR008584 This family consists of a number of hypothetical eukaryotic proteins of unknown function with an average length of around 165 residues.; PDB: 1ZSO_B.
Probab=29.47 E-value=1.5e+02 Score=28.47 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=29.1
Q ss_pred eEEEEEccCCCEEEEEeCCceE--EEEccCCcEEEecCccceeeeEEEEEEE
Q 002753 455 VQHVAASKDGMFLAVAGLHGLI--LYDIRQKKWRVFGDITQEQKIQSKGLLW 504 (884)
Q Consensus 455 I~~va~S~dG~~lavag~dg~i--iwd~~s~~w~~f~~~~~e~~~~v~~~~W 504 (884)
+.=+.|+|++.+.|++...|.. -.|+..+.|.-+.....+ ++.|..+.|
T Consensus 105 ~e~~~f~p~~~~~~~~~esG~~f~~vdL~e~eW~dYDek~~~-~V~I~~~~~ 155 (161)
T PF05907_consen 105 LEPVEFSPRGGWVAVSVESGTKFEDVDLSEGEWYDYDEKAGE-EVSITEFEW 155 (161)
T ss_dssp EEEEEE---S-EEEEET-TS-EEEEE--TTS-EEEEETTTTE-EEEEEEEEE
T ss_pred cEeEEEecCCcEEEEEecCCCEEEeccCCCCceeeeccCCCc-eEEEEEEEE
Confidence 4457899999999999978877 567888899988655444 355666665
No 462
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.23 E-value=6.1e+02 Score=32.38 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=32.0
Q ss_pred ccccCCCceEEEEEccCCCEEEEEeCCceE-EEEccCCcEEE
Q 002753 447 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (884)
Q Consensus 447 ~~~~~~~~I~~va~S~dG~~lavag~dg~i-iwd~~s~~w~~ 487 (884)
.+..+.+++.....+++|..++++-.||.. .||...++-+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~~~ 270 (993)
T KOG1983|consen 229 KYVQSAYLPNGQLESRDGSHFVSYHTDGSYAFWDVSSGKLQI 270 (993)
T ss_pred ccchhhcccccccCccCCceEEEEEecCCEEeeecCCCceee
Confidence 345555666555559999999999999999 99999986543
No 463
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=28.93 E-value=8.8e+02 Score=27.35 Aligned_cols=62 Identities=19% Similarity=0.152 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEE
Q 002753 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (884)
Q Consensus 257 ~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~La 323 (884)
.+.|++++|.....+++++.. ....||..+ +.+..+.... .+..-.-+.|.+++|. ||+++.
T Consensus 89 sgrVsMah~~~sq~V~i~G~~-~gYrYdgat--~~l~~~~~~~-~~p~y~~g~v~Dv~~~-dGryVw 150 (469)
T PF11134_consen 89 SGRVSMAHSGGSQAVAINGKL-KGYRYDGAT--KTLSNWPTDE-GYPQYDLGDVVDVTRL-DGRYVW 150 (469)
T ss_pred CceEEEEeCCceeEEEEcccc-ceEEEechh--hHhhcCCCcC-cccccCccceeEEEec-cceEEE
Confidence 567788888877777775432 345555544 3222222111 0110134567888875 677665
No 464
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=28.42 E-value=9.4e+02 Score=27.53 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCC
Q 002753 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (884)
Q Consensus 257 ~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg 319 (884)
..+..++|.||++++++-...|.|++++-.. ............ ....-.+....|+++||-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~-~~~~~~~~l~~v-~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPET-GEVKVVFTLPEI-VNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCC-CceeeeecCCce-eccCCCCceeeEEECCCc
Confidence 3455589999998887755469999876543 221111111000 000125668999999884
No 465
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=27.49 E-value=1.3e+02 Score=34.12 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=44.2
Q ss_pred CCCEEEEEecCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccC
Q 002753 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (884)
Q Consensus 267 ~~~~la~g~~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~ 338 (884)
...+||+|+..|.||+||--. -.....+.+ -...|..+..+.+|.++.+.+. ..+-+-|+..
T Consensus 572 esGyIa~as~kGDirLyDRig-~rAKtalP~--------lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIG-KRAKTALPG--------LGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhc-chhhhcCcc--------cccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 456899999999999998532 121222333 4567899999999998887776 5777777643
No 466
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.01 E-value=8.4e+02 Score=31.16 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=24.4
Q ss_pred CCCCCEEEEEEcCCcEEEEeccCCee
Q 002753 316 TPDNSAFAVGWKSRGLTVWSVSGCRL 341 (884)
Q Consensus 316 spdg~~Lasg~~dg~v~vW~~~~~~l 341 (884)
+++|..++++..||.+..||...+.+
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 89999999999999999999998865
No 467
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=25.50 E-value=1e+03 Score=26.99 Aligned_cols=67 Identities=15% Similarity=0.058 Sum_probs=32.0
Q ss_pred EE-EEEcCCCCEEEE-EecCCeEEEEEccCCCcceEEEe---eccC-----CCCC--CCCcCeEEEEECCCCCEEEEEE
Q 002753 260 VC-ASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVS---LYDW-----GYSM--DDTGPVSCIAWTPDNSAFAVGW 326 (884)
Q Consensus 260 v~-va~sp~~~~la~-g~~dg~v~lw~~~~~~~~~~~l~---~~~~-----~~~~--~h~~~V~~l~~spdg~~Lasg~ 326 (884)
++ +.+|.|.++|-+ +..+|.||.||+.+......+-+ +... +... .-.|...-+..|-||++|-+..
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 45 889999998765 55689999999988433322211 1000 0000 0123447788888888776543
No 468
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=25.08 E-value=1.3e+03 Score=27.88 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=26.8
Q ss_pred CCceEEEEEccCCCEEEEEeCCceE-EEEcc
Q 002753 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (884)
Q Consensus 452 ~~~I~~va~S~dG~~lavag~dg~i-iwd~~ 481 (884)
...|..+.|.++++.+++.-.+|.+ +||..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence 3468889999999999999999999 99993
No 469
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=24.11 E-value=95 Score=22.59 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=17.5
Q ss_pred cCCCEEEEEeCCc------eE-EEEccCCcEEEe
Q 002753 462 KDGMFLAVAGLHG------LI-LYDIRQKKWRVF 488 (884)
Q Consensus 462 ~dG~~lavag~dg------~i-iwd~~s~~w~~f 488 (884)
.+++.++.||.+. -+ +||+.+++|...
T Consensus 11 ~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 11 GDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp -TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred eCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 5677888887665 34 889999999765
No 470
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=23.50 E-value=9.7e+02 Score=27.09 Aligned_cols=83 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCEEEEEEEecCCCeEEEEEeeCC--CCCCcceEEEEecCCccEEEEcc------CCEEEEEEcCCeEEEEEEEEecccC
Q 002753 506 GKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVY------EDYILVTYRPFDVHIFHVKLFGELT 577 (884)
Q Consensus 506 ~~~lv~~~~~~~~~~~elr~y~~~--~l~~~~~l~~~~~~~~~~~~~~~------~~~llv~~~~~~i~i~~~~~~~~~~ 577 (884)
.+.+|+| +-...||+|... ......++-+.++..|++.+... ++..|+.-....+.||.+...+. .
T Consensus 37 ~d~IivG-----S~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g-~ 110 (418)
T PF14727_consen 37 SDKIIVG-----SYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDG-T 110 (418)
T ss_pred ccEEEEe-----ccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCC-C
Q ss_pred CCCCCceEEEEEEEEee
Q 002753 578 PSTTPDLQLSTVRELSI 594 (884)
Q Consensus 578 ~~~~~~i~~~~~~~~~~ 594 (884)
..+.....+....+-++
T Consensus 111 ~~~g~~~~L~~~yeh~l 127 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSL 127 (418)
T ss_pred cccCcEEEEEEEEEEec
No 471
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=22.92 E-value=9.6e+02 Score=25.76 Aligned_cols=249 Identities=16% Similarity=0.159 Sum_probs=98.3
Q ss_pred CCccEEEEEEcCCcceEEEEEcCCcEEEEeecCCccceeeecccccccCCCCcEE-EEEcCCCCEEEEEecCCeEEEEEc
Q 002753 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDL 285 (884)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~~h~~~v~-va~sp~~~~la~g~~dg~v~lw~~ 285 (884)
.+..+.+|.|.....+.++ -..|.++- ..|+. +.|.......-....-... ++|..+ ...++| ..|.+ + ..
T Consensus 15 t~~~l~dV~F~d~~~G~~V-G~~g~il~--T~DGG-~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~l-l-~T 86 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAV-GAYGTILK--TTDGG-KTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGLL-L-HT 86 (302)
T ss_dssp -SS-EEEEEESSSS-EEEE-ETTTEEEE--ESSTT-SS-EE-----S-----EEEEEEEETT-EEEEEE-ETTEE-E-EE
T ss_pred CCCceEEEEEecCCEEEEE-ecCCEEEE--ECCCC-ccccccccCCCccceeeEEEEEecCC-ceEEEc-CCceE-E-Ee
Confidence 3456888888766566555 35565544 33332 2355433211000011122 666543 445554 45543 2 23
Q ss_pred cCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEeccccccceeeeeecCCCCCC
Q 002753 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (884)
Q Consensus 286 ~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~~~~~~~v~s~~~s~~~~~~ 365 (884)
.+.++.-..+.... .-.+....+....++...+++ ..|.| .-+..+++-...+.......+..+..++++
T Consensus 87 ~DgG~tW~~v~l~~-----~lpgs~~~i~~l~~~~~~l~~-~~G~i-y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG--- 156 (302)
T PF14870_consen 87 TDGGKTWERVPLSS-----KLPGSPFGITALGDGSAELAG-DRGAI-YRTTDGGKTWQAVVSETSGSINDITRSSDG--- 156 (302)
T ss_dssp SSTTSS-EE----T-----T-SS-EEEEEEEETTEEEEEE-TT--E-EEESSTTSSEEEEE-S----EEEEEE-TTS---
T ss_pred cCCCCCcEEeecCC-----CCCCCeeEEEEcCCCcEEEEc-CCCcE-EEeCCCCCCeeEcccCCcceeEeEEECCCC---
Confidence 44355544443210 012334444444555555444 33443 334455554444433324556777777777
Q ss_pred ccceeecc---eeEEEecCCceEEEEecCCcceEEEEeecceeecccCCCCceeeeeeecCCeEEEEecCCCCceeEEEe
Q 002753 366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (884)
Q Consensus 366 ~~~l~sg~---~i~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~l~~~~~~~~i~~~~~~~~~~w~~~ 442 (884)
..++.+. -.+.|+++...-.........+|-.+.| +..-.+|.+..+. .+.... .....-.|+..
T Consensus 157 -~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf---------~~~~~lw~~~~Gg-~~~~s~-~~~~~~~w~~~ 224 (302)
T PF14870_consen 157 -RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGF---------SPDGNLWMLARGG-QIQFSD-DPDDGETWSEP 224 (302)
T ss_dssp --EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE----------TTS-EEEEETTT-EEEEEE--TTEEEEE---
T ss_pred -cEEEEECcccEEEEecCCCccceEEccCccceehhcee---------cCCCCEEEEeCCc-EEEEcc-CCCCccccccc
Confidence 5554333 3456665432221122222334433222 2223445544332 222222 11122245432
Q ss_pred ecccccccCCCceEEEEEccCCCEEEEEeCCceEEEEccCCc-EEEe
Q 002753 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK-WRVF 488 (884)
Q Consensus 443 ~~p~~~~~~~~~I~~va~S~dG~~lavag~dg~iiwd~~s~~-w~~f 488 (884)
..|.. ...+-+..+++.+++...|+| ..|.++.+...|+ |+.-
T Consensus 225 ~~~~~--~~~~~~ld~a~~~~~~~wa~g-g~G~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 225 IIPIK--TNGYGILDLAYRPPNEIWAVG-GSGTLLVSTDGGKTWQKD 268 (302)
T ss_dssp B-TTS--S--S-EEEEEESSSS-EEEEE-STT-EEEESSTTSS-EE-
T ss_pred cCCcc--cCceeeEEEEecCCCCEEEEe-CCccEEEeCCCCccceEC
Confidence 23321 233458899999998777755 4566778887775 7653
No 472
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=22.80 E-value=1.3e+02 Score=21.96 Aligned_cols=32 Identities=22% Similarity=0.533 Sum_probs=23.5
Q ss_pred EEEEccCCCEEEEEeC---C-----ceE-EEEccCCcEEEe
Q 002753 457 HVAASKDGMFLAVAGL---H-----GLI-LYDIRQKKWRVF 488 (884)
Q Consensus 457 ~va~S~dG~~lavag~---d-----g~i-iwd~~s~~w~~f 488 (884)
..+..++++.++.||. + ..+ +||+++.+|+..
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~ 45 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTEL 45 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeec
Confidence 3455678999999988 2 235 889999999754
No 473
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=22.02 E-value=1.1e+03 Score=26.05 Aligned_cols=55 Identities=16% Similarity=0.401 Sum_probs=33.8
Q ss_pred EccCCCEEEEEeCCc----------------------eE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEe
Q 002753 460 ASKDGMFLAVAGLHG----------------------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYI 515 (884)
Q Consensus 460 ~S~dG~~lavag~dg----------------------~i-iwd~~s~~w~~f~~~~~e~~~~v~~~~W~~~~lv~~~~~ 515 (884)
...+|+..+.||.+. .+ +||+.+++|.......+.... .......+.++|+|+..
T Consensus 276 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~-~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 276 GYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAY-GVSVSWNNGVLLIGGET 353 (376)
T ss_pred eeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccc-eEEEEeCCEEEEEcCCC
Confidence 345788888887641 35 899999999876544333221 22334556677777543
No 474
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=21.92 E-value=1.6e+02 Score=24.91 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=23.1
Q ss_pred eeEEEEcCCccEEEEEec-CcEEEEEEEE
Q 002753 70 NLQAVWSPDTKLIAVVTS-SLYLHIFKVQ 97 (884)
Q Consensus 70 ~~~v~wsPDg~~Lav~t~-~g~l~l~~l~ 97 (884)
...+..+||++.|+|++. .+.|.+|+.+
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 357999999999999775 5789999875
No 475
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=21.50 E-value=1.7e+02 Score=28.27 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcCCCCCchhhHHHHHHHhhhcccccccccccccCCcccccchhhHHHHHHHHHh-Cchh
Q 002753 763 CLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRN-FPEY 841 (884)
Q Consensus 763 ~il~~ll~~~~~~~a~~~a~~~~~l~~f~h~LE~lLh~vl~~e~~~~~~~~~~~~~~~~~~~~~~l~~v~~~i~~-~~~~ 841 (884)
+.+|.+-++|+...|++.+..+....=+.=+|-.|.+.--.+- ++- .-...+||.+..+|+. |..|
T Consensus 19 ~~v~~~W~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~------------~tL-d~c~~lLP~i~~LL~Sk~E~~ 85 (164)
T PF13925_consen 19 QVVRTFWRRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEK------------WTL-DLCVDLLPLIEELLQSKYESY 85 (164)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCc------------ccH-HHHHHHHHHHHHHHhCCcHHH
Confidence 5667778899999999999999888877777777663311111 000 0123899999999975 7889
Q ss_pred hhhhhhccccccccchhHhHhhcCCc
Q 002753 842 LNVVVSVARKTDGRHWADLFSAAGRS 867 (884)
Q Consensus 842 l~ivv~c~RKtE~~~W~~lF~~~g~p 867 (884)
..+-.+++|++=-+.|+.+-+.+..|
T Consensus 86 i~~aL~~L~~i~~~f~~~I~~~~~~~ 111 (164)
T PF13925_consen 86 ISVALEMLRSILKKFGPVIRSNLSAP 111 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887644
No 476
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=20.23 E-value=1e+03 Score=25.00 Aligned_cols=108 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEEEcCCcEEEEeecCC--ccceeeecccccc-------cCCCCcEEEEEcCCCCEEEEEecCCeEEEEEccCCCcceEE
Q 002753 224 FVLYSNGQLMSCSVSKK--GLKLAEFIKIDKE-------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (884)
Q Consensus 224 ~~~s~dG~~~~~~~~d~--~i~~w~~~~~~~~-------~~h~~~v~va~sp~~~~la~g~~dg~v~lw~~~~~~~~~~~ 294 (884)
+.+..||.++-++..-+ .++.++..+++.. .--...+++. +.++...-..+++..+||.++ -+.+.+
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qLTWk~~~~f~yd~~t-l~~~~~ 125 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQLTWKEGTGFVYDPNT-LKKIGT 125 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEEESSSSEEEEEETTT-TEEEEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEEEecCCeEEEEcccc-ceEEEE
Q ss_pred EeeccCCCCCCCCcCeEEEEECCCCCEEEEEEcCCcEEEEeccCCeeEEEec
Q 002753 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (884)
Q Consensus 295 l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~dg~v~vW~~~~~~l~~tl~ 346 (884)
+.- .+.=..++ .||..|..+.....+.++|..+.+...++.
T Consensus 126 ~~y---------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 126 FPY---------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EE----------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred Eec---------CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
No 477
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=20.21 E-value=2.5e+02 Score=24.02 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=24.8
Q ss_pred cCCeEEEEEccCCCcceEEEeeccCCCCCCCCcCeEEEEECCCCCEEEEEEc
Q 002753 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (884)
Q Consensus 276 ~dg~v~lw~~~~~~~~~~~l~~~~~~~~~~h~~~V~~l~~spdg~~Lasg~~ 327 (884)
.+|.+.-||..+ ++....+.+. .--+.|+.|||+.+++++-.
T Consensus 35 ~~GRll~ydp~t-~~~~vl~~~L---------~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 35 PTGRLLRYDPST-KETTVLLDGL---------YFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp --EEEEEEETTT-TEEEEEEEEE---------SSEEEEEE-TTSSEEEEEEG
T ss_pred CCcCEEEEECCC-CeEEEehhCC---------CccCeEEEcCCCCEEEEEec
Confidence 456667777766 3332333331 12477999999998888765
No 478
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=20.01 E-value=2e+03 Score=28.43 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=15.0
Q ss_pred eEEEEcCCccEEEEEecCcEE
Q 002753 71 LQAVWSPDTKLIAVVTSSLYL 91 (884)
Q Consensus 71 ~~v~wsPDg~~Lav~t~~g~l 91 (884)
.+++++|+|...++-|....|
T Consensus 596 r~Iavg~~G~lyvaEsD~rri 616 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRI 616 (1899)
T ss_pred hceeecCCceEEEEeccchhh
Confidence 689999999876666554433
Done!