Query 002754
Match_columns 884
No_of_seqs 682 out of 5553
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:27:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 2.3E-85 5E-90 720.8 32.8 429 410-847 296-735 (752)
2 KOG0731 AAA+-type ATPase conta 100.0 7E-77 1.5E-81 693.4 37.2 445 410-861 303-763 (774)
3 COG0465 HflB ATP-dependent Zn 100.0 6.9E-76 1.5E-80 676.2 38.7 432 411-848 143-592 (596)
4 CHL00176 ftsH cell division pr 100.0 3.4E-71 7.5E-76 655.2 42.1 435 412-850 177-629 (638)
5 PRK10733 hflB ATP-dependent me 100.0 2.6E-68 5.6E-73 637.1 43.7 432 413-848 147-597 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 5.5E-66 1.2E-70 603.1 42.2 431 409-845 46-495 (495)
7 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.6E-47 3.4E-52 471.5 25.5 293 444-752 1623-1969(2281)
8 COG1222 RPT1 ATP-dependent 26S 100.0 4.5E-47 9.8E-52 405.9 21.9 252 410-661 143-395 (406)
9 KOG0730 AAA+-type ATPase [Post 100.0 6.7E-41 1.4E-45 381.2 21.5 249 410-661 426-677 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 8.6E-40 1.9E-44 366.3 19.0 248 411-661 504-772 (802)
11 KOG0728 26S proteasome regulat 100.0 7.1E-37 1.5E-41 311.9 23.3 252 410-661 139-391 (404)
12 PF01434 Peptidase_M41: Peptid 100.0 2.3E-36 5E-41 315.8 20.6 193 647-843 1-213 (213)
13 KOG0727 26S proteasome regulat 100.0 3.7E-36 7.9E-41 307.0 20.2 250 411-660 148-398 (408)
14 KOG0733 Nuclear AAA ATPase (VC 100.0 4.7E-36 1E-40 336.4 17.5 226 413-641 185-414 (802)
15 KOG0729 26S proteasome regulat 100.0 5.8E-36 1.3E-40 307.5 14.8 252 410-661 169-421 (435)
16 COG0466 Lon ATP-dependent Lon 100.0 1.4E-34 3.1E-39 332.2 25.5 456 124-656 63-582 (782)
17 KOG0652 26S proteasome regulat 100.0 2.1E-35 4.5E-40 302.7 16.6 248 412-659 165-413 (424)
18 KOG0726 26S proteasome regulat 100.0 1.1E-35 2.4E-40 308.8 13.3 251 410-661 177-429 (440)
19 PTZ00454 26S protease regulato 100.0 2.9E-34 6.2E-39 325.0 22.6 251 411-661 138-389 (398)
20 KOG0736 Peroxisome assembly fa 100.0 3.6E-34 7.9E-39 328.3 19.9 247 411-659 665-933 (953)
21 KOG0738 AAA+-type ATPase [Post 100.0 1.6E-33 3.4E-38 303.2 18.6 247 409-660 203-471 (491)
22 PRK03992 proteasome-activating 100.0 4.5E-33 9.9E-38 316.1 22.7 251 411-661 124-375 (389)
23 PTZ00361 26 proteosome regulat 100.0 5.7E-33 1.2E-37 316.4 22.2 250 411-660 176-426 (438)
24 COG1223 Predicted ATPase (AAA+ 100.0 3.2E-33 6.8E-38 287.1 16.8 239 413-658 116-355 (368)
25 KOG0735 AAA+-type ATPase [Post 100.0 4.5E-32 9.9E-37 308.3 18.2 226 413-641 662-888 (952)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 1.9E-31 4.2E-36 308.0 20.8 240 413-659 223-464 (489)
27 TIGR01242 26Sp45 26S proteasom 100.0 3.8E-31 8.1E-36 298.6 22.5 248 411-658 115-363 (364)
28 TIGR01243 CDC48 AAA family ATP 100.0 4.5E-31 9.7E-36 322.5 22.8 246 412-659 447-711 (733)
29 COG0464 SpoVK ATPases of the A 100.0 4.1E-31 8.9E-36 309.8 20.9 245 411-658 235-483 (494)
30 KOG0651 26S proteasome regulat 100.0 2.3E-31 4.9E-36 279.8 11.3 250 411-660 125-375 (388)
31 KOG0739 AAA+-type ATPase [Post 100.0 1E-29 2.2E-34 265.3 16.2 227 409-641 124-353 (439)
32 KOG0737 AAA+-type ATPase [Post 100.0 1.9E-29 4E-34 272.5 18.3 228 409-641 83-314 (386)
33 TIGR03689 pup_AAA proteasome A 100.0 1.8E-28 3.9E-33 283.0 21.6 266 410-677 174-498 (512)
34 COG0542 clpA ATP-binding subun 100.0 5.1E-29 1.1E-33 294.7 12.5 295 205-603 357-707 (786)
35 PLN00020 ribulose bisphosphate 99.9 2.7E-26 5.9E-31 250.4 20.3 232 445-688 142-394 (413)
36 PRK10865 protein disaggregatio 99.9 2.9E-26 6.3E-31 282.4 22.3 362 208-603 368-781 (857)
37 TIGR00763 lon ATP-dependent pr 99.9 1.5E-25 3.2E-30 274.8 26.9 405 127-601 56-505 (775)
38 KOG0730 AAA+-type ATPase [Post 99.9 7.3E-26 1.6E-30 258.8 19.2 232 418-659 184-417 (693)
39 KOG0741 AAA+-type ATPase [Post 99.9 3.3E-26 7.1E-31 253.8 13.2 273 413-690 214-531 (744)
40 PRK10787 DNA-binding ATP-depen 99.9 8.8E-25 1.9E-29 265.9 25.9 451 127-655 66-579 (784)
41 TIGR01243 CDC48 AAA family ATP 99.9 2.5E-25 5.5E-30 272.1 20.9 245 413-660 173-437 (733)
42 TIGR03346 chaperone_ClpB ATP-d 99.9 8.3E-25 1.8E-29 270.5 24.0 361 208-602 363-777 (852)
43 TIGR03345 VI_ClpV1 type VI sec 99.9 1E-24 2.2E-29 268.1 22.7 351 205-603 374-782 (852)
44 KOG0732 AAA+-type ATPase conta 99.9 5E-25 1.1E-29 264.8 14.8 248 410-660 257-527 (1080)
45 KOG0740 AAA+-type ATPase [Post 99.9 7.8E-24 1.7E-28 236.7 14.8 245 410-661 145-407 (428)
46 CHL00095 clpC Clp protease ATP 99.9 3.8E-21 8.2E-26 237.5 19.4 303 205-603 365-734 (821)
47 KOG2004 Mitochondrial ATP-depe 99.9 1.3E-20 2.8E-25 216.1 21.9 325 224-602 244-597 (906)
48 KOG0742 AAA+-type ATPase [Post 99.8 1.4E-17 3.1E-22 180.8 34.1 177 452-635 385-589 (630)
49 KOG1051 Chaperone HSP104 and r 99.8 2.7E-19 5.9E-24 214.9 6.8 310 208-566 377-711 (898)
50 PF00004 AAA: ATPase family as 99.7 3E-18 6.4E-23 164.0 8.5 130 454-587 1-132 (132)
51 KOG0743 AAA+-type ATPase [Post 99.7 1.1E-17 2.4E-22 186.1 13.4 205 416-630 199-412 (457)
52 CHL00181 cbbX CbbX; Provisiona 99.7 5.2E-17 1.1E-21 177.5 16.5 211 416-638 21-254 (287)
53 TIGR02881 spore_V_K stage V sp 99.7 7.2E-17 1.6E-21 174.4 17.4 210 417-639 5-239 (261)
54 KOG0744 AAA+-type ATPase [Post 99.7 2.5E-17 5.5E-22 175.0 12.8 200 454-657 180-413 (423)
55 PRK11034 clpA ATP-dependent Cl 99.7 1.5E-17 3.2E-22 201.7 8.1 198 389-602 422-667 (758)
56 TIGR02880 cbbX_cfxQ probable R 99.7 2.4E-16 5.1E-21 172.3 16.0 209 419-639 23-254 (284)
57 TIGR02639 ClpA ATP-dependent C 99.7 4.8E-17 1E-21 199.0 10.8 198 388-603 417-664 (731)
58 KOG0736 Peroxisome assembly fa 99.7 6.9E-16 1.5E-20 178.9 16.6 221 432-660 412-655 (953)
59 COG0488 Uup ATPase components 99.7 3.8E-16 8.2E-21 182.5 14.4 239 309-568 216-472 (530)
60 KOG0735 AAA+-type ATPase [Post 99.6 1.4E-15 3.1E-20 174.7 15.0 237 452-689 432-683 (952)
61 PRK00080 ruvB Holliday junctio 99.6 8.9E-14 1.9E-18 155.3 18.2 214 413-658 20-250 (328)
62 COG0464 SpoVK ATPases of the A 99.5 2.3E-13 5.1E-18 160.1 21.1 216 440-660 7-228 (494)
63 TIGR00635 ruvB Holliday juncti 99.5 1.4E-13 3E-18 151.8 17.5 210 416-657 2-228 (305)
64 COG2256 MGS1 ATPase related to 99.5 1.6E-13 3.4E-18 151.0 16.3 177 452-659 49-239 (436)
65 PF05496 RuvB_N: Holliday junc 99.5 7.6E-14 1.6E-18 144.7 12.7 190 413-634 19-225 (233)
66 TIGR00362 DnaA chromosomal rep 99.5 5.1E-14 1.1E-18 161.6 12.3 211 452-690 137-359 (405)
67 PRK00149 dnaA chromosomal repl 99.5 4.9E-14 1.1E-18 163.9 11.0 269 452-756 149-429 (450)
68 COG2255 RuvB Holliday junction 99.5 8.1E-13 1.8E-17 139.4 16.7 214 413-658 21-251 (332)
69 TIGR02639 ClpA ATP-dependent C 99.5 4.1E-13 8.9E-18 164.7 16.7 198 451-660 203-431 (731)
70 PRK11034 clpA ATP-dependent Cl 99.4 2E-12 4.4E-17 157.3 17.7 198 451-660 207-435 (758)
71 PRK14956 DNA polymerase III su 99.4 2E-12 4.3E-17 148.5 16.3 210 411-655 11-243 (484)
72 TIGR02902 spore_lonB ATP-depen 99.4 1.8E-12 3.9E-17 153.3 15.4 214 412-656 59-330 (531)
73 PRK12323 DNA polymerase III su 99.4 1.4E-12 3E-17 153.1 13.7 210 411-655 9-246 (700)
74 PRK14962 DNA polymerase III su 99.4 3.9E-12 8.4E-17 147.9 17.2 204 412-656 8-240 (472)
75 KOG2028 ATPase related to the 99.4 4.6E-12 1E-16 136.8 15.2 213 408-658 128-368 (554)
76 PRK07003 DNA polymerase III su 99.4 3.2E-12 7E-17 151.7 15.2 210 411-655 9-241 (830)
77 PRK14961 DNA polymerase III su 99.4 6E-12 1.3E-16 142.5 16.8 210 412-656 10-242 (363)
78 PRK14960 DNA polymerase III su 99.4 5.1E-12 1.1E-16 148.7 16.1 203 412-655 9-240 (702)
79 PRK14087 dnaA chromosomal repl 99.4 1E-12 2.3E-17 152.2 10.2 275 452-761 142-433 (450)
80 PRK06645 DNA polymerase III su 99.4 7.4E-12 1.6E-16 146.2 16.4 213 411-655 14-253 (507)
81 PRK13342 recombination factor 99.4 2E-11 4.4E-16 140.5 19.6 200 413-658 7-219 (413)
82 TIGR02928 orc1/cdc6 family rep 99.4 1.9E-11 4.1E-16 138.1 19.0 194 451-658 40-274 (365)
83 PRK14088 dnaA chromosomal repl 99.3 2.6E-12 5.6E-17 148.7 11.1 213 452-689 131-355 (440)
84 PRK12422 chromosomal replicati 99.3 3.6E-12 7.8E-17 147.3 11.8 269 452-755 142-422 (445)
85 PRK14958 DNA polymerase III su 99.3 6.6E-12 1.4E-16 147.4 14.0 204 411-655 9-241 (509)
86 PRK14086 dnaA chromosomal repl 99.3 3.8E-12 8.2E-17 149.8 11.2 189 454-659 317-516 (617)
87 PRK04195 replication factor C 99.3 1.6E-11 3.4E-16 144.1 16.0 210 409-655 5-222 (482)
88 PRK07994 DNA polymerase III su 99.3 1.7E-11 3.6E-16 146.1 15.9 208 413-655 11-241 (647)
89 PRK14964 DNA polymerase III su 99.3 1.8E-11 4E-16 141.9 15.4 203 412-655 7-238 (491)
90 PRK00411 cdc6 cell division co 99.3 2.5E-11 5.4E-16 138.7 16.4 195 451-658 55-282 (394)
91 TIGR02903 spore_lon_C ATP-depe 99.3 1.6E-10 3.6E-15 138.8 23.6 215 413-658 149-430 (615)
92 PRK14951 DNA polymerase III su 99.3 2.5E-11 5.4E-16 144.4 16.3 209 412-655 10-246 (618)
93 PRK05342 clpX ATP-dependent pr 99.3 3.4E-11 7.3E-16 137.7 16.6 186 452-639 109-379 (412)
94 PRK08691 DNA polymerase III su 99.3 2.1E-11 4.5E-16 144.9 15.0 211 411-656 9-242 (709)
95 KOG0927 Predicted transporter 99.3 1.5E-11 3.3E-16 139.3 13.0 240 309-568 285-542 (614)
96 PRK05563 DNA polymerase III su 99.3 3.1E-11 6.7E-16 143.4 16.4 203 412-655 10-241 (559)
97 PRK06893 DNA replication initi 99.3 3.5E-11 7.7E-16 127.7 15.1 179 453-655 41-227 (229)
98 PRK14949 DNA polymerase III su 99.3 3E-11 6.5E-16 146.1 15.6 208 412-654 10-240 (944)
99 PTZ00112 origin recognition co 99.3 5.7E-11 1.2E-15 141.5 16.9 192 451-661 780-1009(1164)
100 TIGR03345 VI_ClpV1 type VI sec 99.3 4E-11 8.7E-16 148.6 16.3 217 414-655 183-428 (852)
101 TIGR03420 DnaA_homol_Hda DnaA 99.3 3.3E-11 7.1E-16 126.9 13.1 179 451-655 38-225 (226)
102 TIGR00382 clpX endopeptidase C 99.3 2E-11 4.3E-16 139.0 12.1 187 452-640 117-386 (413)
103 PRK14969 DNA polymerase III su 99.3 5E-11 1.1E-15 140.8 15.9 209 413-656 11-242 (527)
104 KOG0066 eIF2-interacting prote 99.3 1.1E-11 2.3E-16 136.3 9.4 243 308-567 474-736 (807)
105 PRK14963 DNA polymerase III su 99.3 5.9E-11 1.3E-15 139.1 16.3 203 411-655 7-237 (504)
106 PLN03025 replication factor C 99.3 8.3E-11 1.8E-15 130.9 16.6 203 409-654 4-219 (319)
107 TIGR02397 dnaX_nterm DNA polym 99.3 6.4E-11 1.4E-15 133.3 15.3 204 411-655 7-239 (355)
108 PRK07940 DNA polymerase III su 99.2 3.6E-11 7.9E-16 136.8 12.7 189 416-629 3-213 (394)
109 PRK14957 DNA polymerase III su 99.2 7.6E-11 1.6E-15 138.6 14.8 209 412-655 10-241 (546)
110 PRK14959 DNA polymerase III su 99.2 9E-11 1.9E-15 138.9 15.1 204 411-655 9-241 (624)
111 PRK12402 replication factor C 99.2 2E-10 4.3E-15 128.2 17.2 210 410-656 7-247 (337)
112 PRK07764 DNA polymerase III su 99.2 8.1E-11 1.8E-15 144.4 15.1 211 411-655 8-243 (824)
113 PRK13341 recombination factor 99.2 2.3E-10 5.1E-15 138.9 18.5 208 413-658 23-247 (725)
114 PRK14953 DNA polymerase III su 99.2 1.3E-10 2.9E-15 135.7 15.7 210 411-655 9-241 (486)
115 PRK14952 DNA polymerase III su 99.2 7.7E-11 1.7E-15 139.7 13.9 210 412-655 7-241 (584)
116 PRK07133 DNA polymerase III su 99.2 1.4E-10 3E-15 139.1 16.1 210 411-655 11-240 (725)
117 CHL00095 clpC Clp protease ATP 99.2 2.5E-10 5.3E-15 142.0 18.3 174 450-636 199-399 (821)
118 PRK14965 DNA polymerase III su 99.2 1.6E-10 3.4E-15 138.0 15.7 208 412-654 10-240 (576)
119 PHA02544 44 clamp loader, smal 99.2 7.7E-11 1.7E-15 130.7 12.2 161 409-601 12-173 (316)
120 TIGR02640 gas_vesic_GvpN gas v 99.2 1.6E-10 3.6E-15 125.1 14.4 183 452-659 22-258 (262)
121 PRK05896 DNA polymerase III su 99.2 1.1E-10 2.4E-15 137.5 13.8 204 411-655 9-241 (605)
122 COG1474 CDC6 Cdc6-related prot 99.2 3.1E-10 6.7E-15 128.1 16.9 195 449-659 40-266 (366)
123 PRK10865 protein disaggregatio 99.2 9E-11 2E-15 145.8 13.1 164 415-603 175-356 (857)
124 PRK14970 DNA polymerase III su 99.2 2.3E-10 5E-15 129.8 15.4 209 412-655 11-230 (367)
125 PRK09111 DNA polymerase III su 99.2 3.1E-10 6.8E-15 135.2 16.6 211 411-656 17-255 (598)
126 PRK08084 DNA replication initi 99.2 2.3E-10 5.1E-15 121.9 13.7 178 452-655 46-233 (235)
127 PRK08903 DnaA regulatory inact 99.2 2.9E-10 6.3E-15 120.2 14.3 174 451-656 42-224 (227)
128 KOG0989 Replication factor C, 99.2 5.9E-10 1.3E-14 119.2 16.3 181 409-623 27-224 (346)
129 TIGR01650 PD_CobS cobaltochela 99.2 2.1E-10 4.6E-15 126.3 12.8 138 451-602 64-234 (327)
130 COG2812 DnaX DNA polymerase II 99.2 3.1E-10 6.7E-15 131.5 14.7 209 412-655 10-241 (515)
131 TIGR02030 BchI-ChlI magnesium 99.2 6.6E-10 1.4E-14 124.0 16.6 134 511-660 132-311 (337)
132 PRK08727 hypothetical protein; 99.2 3.1E-10 6.6E-15 120.9 13.3 178 453-656 43-229 (233)
133 PRK05642 DNA replication initi 99.1 5.3E-10 1.2E-14 119.1 14.9 178 452-655 46-232 (234)
134 TIGR03346 chaperone_ClpB ATP-d 99.1 2.6E-10 5.6E-15 142.2 14.3 175 452-639 195-397 (852)
135 PRK14955 DNA polymerase III su 99.1 4.2E-10 9.2E-15 129.0 15.0 214 411-655 9-254 (397)
136 PRK08451 DNA polymerase III su 99.1 3.7E-10 7.9E-15 132.3 14.0 210 411-655 7-239 (535)
137 PRK13407 bchI magnesium chelat 99.1 4.5E-10 9.7E-15 125.1 13.7 217 414-659 4-307 (334)
138 COG0593 DnaA ATPase involved i 99.1 2.4E-10 5.2E-15 129.0 11.3 270 454-761 116-396 (408)
139 PRK06647 DNA polymerase III su 99.1 5.6E-10 1.2E-14 132.5 14.3 209 412-655 10-241 (563)
140 TIGR00390 hslU ATP-dependent p 99.1 1.1E-10 2.5E-15 131.4 7.7 85 510-598 247-343 (441)
141 PRK06305 DNA polymerase III su 99.1 1.2E-09 2.7E-14 126.8 15.7 209 412-655 11-243 (451)
142 PRK14950 DNA polymerase III su 99.1 1.6E-09 3.4E-14 130.0 17.0 210 411-655 9-242 (585)
143 PRK14954 DNA polymerase III su 99.1 1.2E-09 2.7E-14 130.4 15.7 213 412-655 10-254 (620)
144 CHL00081 chlI Mg-protoporyphyr 99.1 1.2E-09 2.7E-14 122.0 14.4 221 413-661 12-325 (350)
145 PRK05201 hslU ATP-dependent pr 99.1 3.3E-10 7.1E-15 127.8 9.6 85 510-598 249-345 (443)
146 PRK00440 rfc replication facto 99.1 1.8E-09 3.9E-14 119.5 15.2 204 409-655 8-223 (319)
147 PRK10636 putative ABC transpor 99.1 5.7E-10 1.2E-14 135.2 12.0 233 310-567 213-462 (638)
148 PRK14948 DNA polymerase III su 99.0 1.5E-09 3.3E-14 130.2 14.1 208 411-654 9-241 (620)
149 PF00308 Bac_DnaA: Bacterial d 99.0 5.6E-10 1.2E-14 117.8 8.9 168 454-638 37-216 (219)
150 PF05673 DUF815: Protein of un 99.0 4.8E-09 1E-13 110.6 15.1 190 412-631 21-242 (249)
151 cd00009 AAA The AAA+ (ATPases 99.0 7.7E-10 1.7E-14 106.0 8.4 119 452-586 20-150 (151)
152 PRK06620 hypothetical protein; 99.0 1.9E-09 4.2E-14 113.3 11.7 164 452-655 45-213 (214)
153 PF07724 AAA_2: AAA domain (Cd 99.0 4.3E-10 9.3E-15 114.1 6.3 110 453-567 5-131 (171)
154 PRK14971 DNA polymerase III su 99.0 5.1E-09 1.1E-13 125.7 15.5 209 412-655 11-243 (614)
155 PRK11147 ABC transporter ATPas 99.0 2.1E-09 4.6E-14 130.4 12.0 234 310-567 220-472 (635)
156 COG0714 MoxR-like ATPases [Gen 99.0 2.7E-09 5.8E-14 119.4 11.7 127 452-598 44-200 (329)
157 TIGR02442 Cob-chelat-sub cobal 98.9 7.7E-09 1.7E-13 125.1 15.5 191 452-659 26-305 (633)
158 smart00350 MCM minichromosome 98.9 1E-08 2.2E-13 121.2 16.2 190 453-660 238-506 (509)
159 TIGR02031 BchD-ChlD magnesium 98.9 8.1E-09 1.8E-13 123.7 15.0 191 452-659 17-259 (589)
160 PHA02244 ATPase-like protein 98.9 6.2E-08 1.3E-12 108.1 20.4 125 453-597 121-269 (383)
161 PRK09087 hypothetical protein; 98.9 5.3E-09 1.2E-13 110.9 11.3 170 454-658 47-222 (226)
162 COG1224 TIP49 DNA helicase TIP 98.9 1.3E-08 2.7E-13 110.8 14.0 129 511-659 292-433 (450)
163 TIGR03015 pepcterm_ATPase puta 98.9 2.2E-08 4.8E-13 108.2 16.2 189 454-658 46-266 (269)
164 PF07728 AAA_5: AAA domain (dy 98.9 8.5E-10 1.8E-14 107.4 4.0 109 453-579 1-139 (139)
165 TIGR00678 holB DNA polymerase 98.9 6.9E-09 1.5E-13 106.6 10.8 145 449-622 12-184 (188)
166 PRK13531 regulatory ATPase Rav 98.9 2.1E-08 4.6E-13 115.4 14.3 193 452-661 40-286 (498)
167 smart00382 AAA ATPases associa 98.8 5.6E-09 1.2E-13 98.9 6.8 125 452-588 3-147 (148)
168 TIGR00368 Mg chelatase-related 98.8 1.9E-08 4.2E-13 117.8 12.5 185 453-656 213-497 (499)
169 PRK05707 DNA polymerase III su 98.8 2.1E-08 4.5E-13 111.9 10.6 155 448-624 19-198 (328)
170 PRK07471 DNA polymerase III su 98.8 4.4E-08 9.4E-13 110.9 12.9 180 413-625 14-234 (365)
171 PRK09862 putative ATP-dependen 98.8 6E-08 1.3E-12 113.4 13.3 185 453-656 212-490 (506)
172 KOG0062 ATPase component of AB 98.7 1.8E-08 3.9E-13 114.2 8.6 232 310-568 262-515 (582)
173 PRK09112 DNA polymerase III su 98.7 4.1E-08 8.9E-13 110.5 11.4 180 414-624 19-235 (351)
174 PRK04132 replication factor C 98.7 4.7E-08 1E-12 119.8 12.7 178 447-655 559-751 (846)
175 PRK05564 DNA polymerase III su 98.7 5.2E-08 1.1E-12 108.3 12.1 170 416-624 2-185 (313)
176 COG0470 HolB ATPase involved i 98.7 1.2E-07 2.5E-12 105.2 13.6 129 449-598 22-178 (325)
177 PLN03073 ABC transporter F fam 98.7 3.9E-08 8.4E-13 120.3 10.1 233 310-567 408-659 (718)
178 COG1219 ClpX ATP-dependent pro 98.7 6.1E-08 1.3E-12 104.2 9.6 99 449-550 94-202 (408)
179 KOG0745 Putative ATP-dependent 98.7 1.5E-07 3.2E-12 104.7 12.7 95 453-550 228-331 (564)
180 PRK11331 5-methylcytosine-spec 98.7 4E-08 8.7E-13 112.2 8.3 121 451-587 194-357 (459)
181 PF07726 AAA_3: ATPase family 98.6 9.2E-09 2E-13 98.3 1.8 104 453-579 1-129 (131)
182 KOG1969 DNA replication checkp 98.6 1.2E-07 2.5E-12 111.2 11.0 169 454-643 329-520 (877)
183 COG2607 Predicted ATPase (AAA+ 98.6 7.5E-07 1.6E-11 92.8 15.6 167 411-607 53-245 (287)
184 PRK15064 ABC transporter ATP-b 98.6 2.2E-07 4.7E-12 110.7 12.4 61 425-485 317-379 (530)
185 COG0542 clpA ATP-binding subun 98.6 4.4E-07 9.6E-12 109.4 14.8 176 454-641 194-396 (786)
186 TIGR00602 rad24 checkpoint pro 98.6 2.2E-07 4.7E-12 111.4 12.1 224 408-655 74-352 (637)
187 TIGR00764 lon_rel lon-related 98.6 3.4E-07 7.4E-12 110.1 13.8 103 555-659 267-392 (608)
188 COG1239 ChlI Mg-chelatase subu 98.6 5.6E-07 1.2E-11 101.0 13.2 131 511-658 145-322 (423)
189 TIGR01817 nifA Nif-specific re 98.6 3.4E-07 7.4E-12 109.2 12.4 206 414-652 192-439 (534)
190 KOG0991 Replication factor C, 98.6 2.5E-07 5.4E-12 95.6 9.5 208 408-655 17-234 (333)
191 PRK06871 DNA polymerase III su 98.5 3E-07 6.5E-12 102.3 10.7 134 449-601 22-179 (325)
192 PF01078 Mg_chelatase: Magnesi 98.5 1E-07 2.2E-12 98.6 6.2 46 417-476 2-47 (206)
193 PRK07399 DNA polymerase III su 98.5 2.8E-07 6E-12 102.5 9.9 179 416-627 2-219 (314)
194 PRK07993 DNA polymerase III su 98.5 3E-07 6.6E-12 102.9 10.3 155 448-625 21-200 (334)
195 PF05621 TniB: Bacterial TniB 98.5 1.3E-06 2.8E-11 95.1 14.8 214 422-654 38-285 (302)
196 COG1220 HslU ATP-dependent pro 98.5 2.6E-07 5.6E-12 100.1 9.2 84 511-598 251-346 (444)
197 PRK06964 DNA polymerase III su 98.5 1.3E-07 2.7E-12 105.9 7.2 133 449-600 19-203 (342)
198 TIGR02974 phageshock_pspF psp 98.5 8.8E-07 1.9E-11 99.2 13.9 176 452-650 23-242 (329)
199 KOG0741 AAA+-type ATPase [Post 98.5 3.5E-07 7.6E-12 103.7 10.0 137 453-598 540-683 (744)
200 PRK11608 pspF phage shock prot 98.5 6.1E-07 1.3E-11 100.4 11.3 189 418-636 6-238 (326)
201 PTZ00111 DNA replication licen 98.5 1.9E-06 4.2E-11 105.5 16.2 124 453-595 494-651 (915)
202 PRK13406 bchD magnesium chelat 98.5 7.3E-07 1.6E-11 106.4 12.4 192 452-660 26-252 (584)
203 COG2204 AtoC Response regulato 98.5 6.3E-07 1.4E-11 103.0 11.1 206 417-652 140-385 (464)
204 PRK08058 DNA polymerase III su 98.5 3.6E-07 7.9E-12 102.3 8.8 132 449-599 26-180 (329)
205 KOG1942 DNA helicase, TBP-inte 98.5 1.2E-06 2.7E-11 93.1 12.1 131 509-659 295-439 (456)
206 PRK15424 propionate catabolism 98.5 1.4E-06 3E-11 103.0 13.6 208 415-652 216-479 (538)
207 PRK08769 DNA polymerase III su 98.4 6.3E-07 1.4E-11 99.5 9.9 156 448-627 23-206 (319)
208 PRK11388 DNA-binding transcrip 98.4 1.3E-06 2.9E-11 106.4 13.5 208 415-655 322-568 (638)
209 smart00763 AAA_PrkA PrkA AAA d 98.4 1.3E-06 2.8E-11 97.7 12.1 67 417-490 49-128 (361)
210 COG3829 RocR Transcriptional r 98.4 1.3E-06 2.8E-11 100.6 11.3 213 412-656 239-496 (560)
211 COG1221 PspF Transcriptional r 98.4 1.1E-06 2.3E-11 99.6 10.4 196 414-639 74-310 (403)
212 KOG1514 Origin recognition com 98.4 3E-06 6.4E-11 99.6 14.2 191 454-660 425-657 (767)
213 PRK10820 DNA-binding transcrip 98.4 2.5E-06 5.4E-11 101.3 14.1 205 414-651 200-447 (520)
214 TIGR02329 propionate_PrpR prop 98.4 1.4E-06 3E-11 103.0 11.8 211 415-653 209-465 (526)
215 PRK11819 putative ABC transpor 98.4 5.1E-07 1.1E-11 108.1 8.3 59 427-485 324-384 (556)
216 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 6E-07 1.3E-11 107.5 8.4 58 427-484 322-381 (552)
217 PRK06090 DNA polymerase III su 98.4 7.6E-07 1.6E-11 98.8 8.3 133 448-599 22-178 (319)
218 PRK08699 DNA polymerase III su 98.3 6.6E-07 1.4E-11 99.9 6.7 131 449-599 19-183 (325)
219 COG1116 TauB ABC-type nitrate/ 98.3 2.8E-07 6E-12 97.3 3.2 52 433-484 9-62 (248)
220 PRK05022 anaerobic nitric oxid 98.3 4.4E-06 9.5E-11 99.1 13.7 192 418-639 187-421 (509)
221 PF13177 DNA_pol3_delta2: DNA 98.3 8.8E-07 1.9E-11 89.2 6.6 117 449-587 17-160 (162)
222 COG3604 FhlA Transcriptional r 98.3 2.7E-05 5.9E-10 88.9 18.6 198 414-638 219-456 (550)
223 COG0606 Predicted ATPase with 98.3 1.6E-06 3.4E-11 98.7 8.8 209 415-656 176-483 (490)
224 KOG2227 Pre-initiation complex 98.3 1.3E-05 2.8E-10 90.6 14.8 183 447-643 171-384 (529)
225 COG1120 FepC ABC-type cobalami 98.3 1.1E-06 2.4E-11 94.1 5.9 53 432-484 7-61 (258)
226 PF06068 TIP49: TIP49 C-termin 98.2 2.5E-06 5.4E-11 94.7 7.4 77 511-607 279-367 (398)
227 COG1126 GlnQ ABC-type polar am 98.2 7.1E-07 1.5E-11 92.0 2.9 55 430-484 5-61 (240)
228 PRK15429 formate hydrogenlyase 98.2 1.3E-05 2.7E-10 98.6 14.2 195 415-637 373-608 (686)
229 PF00158 Sigma54_activat: Sigm 98.2 4.8E-06 1E-10 84.4 8.5 97 452-565 23-143 (168)
230 PRK08116 hypothetical protein; 98.2 1.1E-06 2.4E-11 95.5 4.2 128 452-598 115-257 (268)
231 PRK06526 transposase; Provisio 98.2 4.4E-06 9.6E-11 90.2 8.6 71 451-523 98-172 (254)
232 PF00493 MCM: MCM2/3/5 family 98.2 2.1E-06 4.5E-11 96.3 5.9 190 453-659 59-327 (331)
233 COG1121 ZnuC ABC-type Mn/Zn tr 98.2 8.9E-07 1.9E-11 94.5 2.6 54 431-484 8-63 (254)
234 TIGR02915 PEP_resp_reg putativ 98.1 1.2E-05 2.7E-10 93.5 12.2 177 453-652 164-383 (445)
235 COG3842 PotA ABC-type spermidi 98.1 5.8E-07 1.3E-11 100.3 0.9 57 430-486 8-66 (352)
236 COG3839 MalK ABC-type sugar tr 98.1 6.5E-07 1.4E-11 99.4 1.3 56 431-486 7-64 (338)
237 cd03222 ABC_RNaseL_inhibitor T 98.1 1E-06 2.3E-11 89.9 2.2 74 448-521 20-100 (177)
238 PRK08181 transposase; Validate 98.1 1.3E-05 2.8E-10 87.2 10.4 69 452-522 107-179 (269)
239 PRK09183 transposase/IS protei 98.1 1.1E-05 2.5E-10 87.3 9.5 70 452-522 103-176 (259)
240 COG4559 ABC-type hemin transpo 98.1 3.4E-06 7.3E-11 86.7 4.8 53 433-485 7-61 (259)
241 COG0488 Uup ATPase components 98.1 2.7E-06 5.8E-11 100.5 4.6 56 431-486 7-64 (530)
242 PF13173 AAA_14: AAA domain 98.1 9E-06 1.9E-10 78.4 7.3 67 454-522 5-73 (128)
243 PRK12377 putative replication 98.1 3.3E-05 7.2E-10 83.0 12.3 69 452-522 102-175 (248)
244 PF13401 AAA_22: AAA domain; P 98.0 9.7E-06 2.1E-10 77.5 7.2 96 453-563 6-125 (131)
245 COG1134 TagH ABC-type polysacc 98.0 5.5E-06 1.2E-10 87.2 5.8 47 440-486 40-88 (249)
246 COG1118 CysA ABC-type sulfate/ 98.0 4.4E-06 9.5E-11 90.2 5.0 88 431-519 6-98 (345)
247 PRK07952 DNA replication prote 98.0 4.4E-05 9.6E-10 81.9 12.6 69 452-522 100-174 (244)
248 KOG2680 DNA helicase TIP49, TB 98.0 5.6E-05 1.2E-09 81.1 12.9 92 566-660 339-431 (454)
249 COG1241 MCM2 Predicted ATPase 98.0 1.8E-05 3.8E-10 95.0 10.2 223 417-660 285-594 (682)
250 KOG0990 Replication factor C, 98.0 3.3E-05 7.1E-10 83.9 11.2 134 453-605 64-207 (360)
251 cd03216 ABC_Carb_Monos_I This 98.0 7.3E-06 1.6E-10 82.4 5.9 113 441-567 14-143 (163)
252 KOG0478 DNA replication licens 98.0 7E-05 1.5E-09 87.9 14.6 157 418-591 429-616 (804)
253 COG4133 CcmA ABC-type transpor 98.0 1.1E-05 2.4E-10 81.7 6.9 54 432-485 7-62 (209)
254 KOG2035 Replication factor C, 98.0 6.4E-05 1.4E-09 80.1 12.1 156 453-627 36-226 (351)
255 KOG0480 DNA replication licens 98.0 6.3E-05 1.4E-09 87.7 13.0 226 415-661 342-646 (764)
256 COG4619 ABC-type uncharacteriz 98.0 2.7E-05 5.8E-10 77.4 8.4 56 428-483 4-61 (223)
257 cd03259 ABC_Carb_Solutes_like 97.9 3.2E-06 7E-11 88.5 1.9 48 437-484 10-59 (213)
258 cd03214 ABC_Iron-Siderophores_ 97.9 3.4E-06 7.4E-11 86.1 1.9 42 441-482 13-56 (180)
259 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 1E-05 2.2E-10 79.8 5.0 81 441-521 14-99 (144)
260 cd00267 ABC_ATPase ABC (ATP-bi 97.9 6.8E-06 1.5E-10 81.8 3.8 115 441-569 13-143 (157)
261 COG1119 ModF ABC-type molybden 97.9 9.4E-06 2E-10 85.4 4.9 52 425-476 29-82 (257)
262 PRK13765 ATP-dependent proteas 97.9 3.6E-05 7.7E-10 92.8 10.5 100 556-657 277-399 (637)
263 PF01695 IstB_IS21: IstB-like 97.9 5E-06 1.1E-10 85.0 2.8 68 451-520 47-118 (178)
264 cd03230 ABC_DR_subfamily_A Thi 97.9 1.1E-05 2.3E-10 81.9 5.1 42 441-482 14-57 (173)
265 cd03228 ABCC_MRP_Like The MRP 97.9 1.1E-05 2.5E-10 81.6 5.2 42 442-483 17-60 (171)
266 PRK11361 acetoacetate metaboli 97.9 3.8E-05 8.3E-10 89.6 10.2 180 453-655 168-390 (457)
267 PRK05917 DNA polymerase III su 97.9 2.2E-05 4.8E-10 85.8 7.6 119 448-588 16-154 (290)
268 PRK10923 glnG nitrogen regulat 97.9 5.2E-05 1.1E-09 88.9 11.2 179 453-654 163-384 (469)
269 TIGR01818 ntrC nitrogen regula 97.9 2.5E-05 5.4E-10 91.4 8.3 184 453-655 159-381 (463)
270 cd03301 ABC_MalK_N The N-termi 97.9 4.7E-06 1E-10 87.2 1.4 46 439-484 12-59 (213)
271 COG4586 ABC-type uncharacteriz 97.9 1.8E-05 4E-10 84.2 5.6 44 443-486 40-85 (325)
272 cd03226 ABC_cobalt_CbiO_domain 97.9 5.6E-06 1.2E-10 86.2 1.7 45 440-484 13-59 (205)
273 cd03229 ABC_Class3 This class 97.8 1.3E-05 2.9E-10 81.6 4.3 43 440-482 13-57 (178)
274 PF03215 Rad17: Rad17 cell cyc 97.8 0.00015 3.2E-09 85.8 13.4 66 410-482 11-76 (519)
275 PRK15115 response regulator Gl 97.8 3.1E-05 6.6E-10 90.2 7.8 180 453-655 159-381 (444)
276 cd03246 ABCC_Protease_Secretio 97.8 2.6E-05 5.7E-10 79.1 6.2 42 442-483 17-60 (173)
277 cd03247 ABCC_cytochrome_bd The 97.8 1.8E-05 3.8E-10 80.7 5.0 42 442-483 17-60 (178)
278 cd03223 ABCD_peroxisomal_ALDP 97.8 2.4E-05 5.2E-10 78.9 5.7 44 441-484 15-60 (166)
279 PRK13539 cytochrome c biogenes 97.8 2.6E-05 5.6E-10 81.5 6.1 45 439-483 14-60 (207)
280 COG1127 Ttg2A ABC-type transpo 97.8 6.3E-06 1.4E-10 86.4 1.4 57 426-482 7-65 (263)
281 COG1122 CbiO ABC-type cobalt t 97.8 8.7E-06 1.9E-10 86.8 2.3 44 441-484 18-63 (235)
282 cd03225 ABC_cobalt_CbiO_domain 97.8 8.2E-06 1.8E-10 85.2 2.0 45 440-484 14-60 (211)
283 COG1131 CcmA ABC-type multidru 97.8 2.3E-05 4.9E-10 86.5 5.5 55 431-485 8-65 (293)
284 COG2884 FtsE Predicted ATPase 97.8 3.6E-05 7.8E-10 78.1 6.1 57 430-486 4-63 (223)
285 PF01637 Arch_ATPase: Archaeal 97.8 2.5E-05 5.5E-10 81.6 5.3 161 452-624 21-229 (234)
286 COG1484 DnaC DNA replication p 97.8 2.5E-05 5.5E-10 84.3 5.4 71 451-522 105-179 (254)
287 COG0410 LivF ABC-type branched 97.8 2.7E-05 5.8E-10 81.4 4.9 56 430-485 6-63 (237)
288 PRK11247 ssuB aliphatic sulfon 97.8 5.2E-05 1.1E-09 82.1 7.4 48 437-484 22-71 (257)
289 PRK06835 DNA replication prote 97.8 2.2E-05 4.8E-10 87.7 4.7 69 452-522 184-258 (329)
290 cd01120 RecA-like_NTPases RecA 97.7 0.0001 2.2E-09 72.4 8.7 72 454-525 2-100 (165)
291 cd03269 ABC_putative_ATPase Th 97.7 3.2E-05 6.9E-10 80.8 5.3 47 439-485 12-60 (210)
292 PRK08939 primosomal protein Dn 97.7 2.9E-05 6.3E-10 86.1 5.1 69 451-521 156-228 (306)
293 PRK13537 nodulation ABC transp 97.7 6.2E-06 1.3E-10 91.5 -0.2 54 431-484 11-66 (306)
294 cd03238 ABC_UvrA The excision 97.7 5.2E-05 1.1E-09 77.4 6.4 33 441-473 9-43 (176)
295 cd03218 ABC_YhbG The ABC trans 97.7 1E-05 2.2E-10 85.8 1.2 48 437-484 10-59 (232)
296 PRK10365 transcriptional regul 97.7 8.7E-05 1.9E-09 86.2 9.0 183 453-655 164-386 (441)
297 PRK11650 ugpC glycerol-3-phosp 97.7 9.1E-06 2E-10 92.1 0.7 45 441-485 18-64 (356)
298 PF05729 NACHT: NACHT domain 97.7 0.00016 3.5E-09 71.5 9.5 141 454-603 3-165 (166)
299 PRK10636 putative ABC transpor 97.7 1.6E-05 3.5E-10 96.8 2.7 52 433-484 7-60 (638)
300 COG2274 SunT ABC-type bacterio 97.7 6E-05 1.3E-09 92.0 7.5 132 429-567 473-641 (709)
301 PRK11432 fbpC ferric transport 97.7 2.7E-05 5.8E-10 88.1 4.2 49 437-485 16-66 (351)
302 COG1124 DppF ABC-type dipeptid 97.7 2.8E-05 6E-10 81.9 3.9 45 442-486 22-68 (252)
303 PRK13543 cytochrome c biogenes 97.7 1.8E-05 3.9E-10 83.1 2.5 55 431-485 15-71 (214)
304 PRK11147 ABC transporter ATPas 97.7 4.2E-05 9.1E-10 93.3 5.9 53 432-484 8-62 (635)
305 TIGR00960 3a0501s02 Type II (G 97.7 4E-05 8.8E-10 80.4 5.0 44 441-484 17-62 (216)
306 TIGR01288 nodI ATP-binding ABC 97.7 1.3E-05 2.7E-10 88.9 1.1 50 435-484 12-63 (303)
307 PRK06921 hypothetical protein; 97.7 4.1E-05 8.9E-10 83.3 4.9 67 451-520 117-187 (266)
308 PRK09544 znuC high-affinity zi 97.7 4.7E-05 1E-09 82.1 5.3 49 437-485 14-64 (251)
309 TIGR01188 drrA daunorubicin re 97.7 3.9E-05 8.4E-10 85.0 4.6 46 439-484 5-52 (302)
310 cd03267 ABC_NatA_like Similar 97.7 4.6E-05 9.9E-10 81.3 5.0 50 435-484 29-80 (236)
311 cd03268 ABC_BcrA_bacitracin_re 97.6 4.4E-05 9.4E-10 79.6 4.6 46 439-484 12-59 (208)
312 COG4555 NatA ABC-type Na+ tran 97.6 6.2E-05 1.3E-09 77.1 5.4 43 443-485 18-62 (245)
313 PRK11000 maltose/maltodextrin 97.6 3.1E-05 6.8E-10 88.2 3.7 48 437-484 13-62 (369)
314 PF03969 AFG1_ATPase: AFG1-lik 97.6 4.6E-05 9.9E-10 86.3 4.7 142 447-614 58-206 (362)
315 cd03215 ABC_Carb_Monos_II This 97.6 5.1E-05 1.1E-09 77.6 4.5 42 442-483 15-58 (182)
316 COG1125 OpuBA ABC-type proline 97.6 4.1E-05 8.9E-10 80.9 3.7 56 429-484 3-60 (309)
317 PRK13638 cbiO cobalt transport 97.6 5E-05 1.1E-09 82.8 4.6 46 439-484 13-60 (271)
318 TIGR03265 PhnT2 putative 2-ami 97.6 4.5E-05 9.8E-10 86.4 4.3 48 437-484 14-63 (353)
319 PF14532 Sigma54_activ_2: Sigm 97.6 0.0001 2.3E-09 71.9 6.2 83 453-564 23-108 (138)
320 cd03266 ABC_NatA_sodium_export 97.6 5.2E-05 1.1E-09 79.6 4.3 44 441-484 19-64 (218)
321 COG3840 ThiQ ABC-type thiamine 97.6 6.9E-05 1.5E-09 75.6 4.7 41 445-485 17-59 (231)
322 COG3267 ExeA Type II secretory 97.6 0.00099 2.1E-08 70.8 13.5 185 454-652 54-267 (269)
323 PRK13541 cytochrome c biogenes 97.6 5.2E-05 1.1E-09 78.4 4.0 39 446-484 19-59 (195)
324 PRK13536 nodulation factor exp 97.6 2E-05 4.3E-10 88.8 0.9 57 428-484 42-100 (340)
325 PRK11607 potG putrescine trans 97.6 2E-05 4.3E-10 89.9 0.6 49 436-484 28-78 (377)
326 cd03231 ABC_CcmA_heme_exporter 97.6 0.00021 4.6E-09 74.3 8.1 46 439-484 12-59 (201)
327 cd03283 ABC_MutS-like MutS-lik 97.5 0.00016 3.5E-09 75.3 7.2 31 445-475 19-49 (199)
328 cd03213 ABCG_EPDR ABCG transpo 97.5 0.00011 2.4E-09 76.0 5.8 44 441-484 23-70 (194)
329 TIGR03258 PhnT 2-aminoethylpho 97.5 5.9E-05 1.3E-09 85.7 4.0 48 437-484 15-66 (362)
330 PRK07276 DNA polymerase III su 97.5 0.00039 8.4E-09 76.4 10.2 128 449-598 22-172 (290)
331 PRK09452 potA putrescine/sperm 97.5 6.2E-05 1.3E-09 85.8 4.1 44 441-484 28-73 (375)
332 TIGR02868 CydC thiol reductant 97.5 0.00014 2.9E-09 86.8 7.2 56 430-485 337-395 (529)
333 COG1136 SalX ABC-type antimicr 97.5 7.9E-05 1.7E-09 78.6 4.6 42 441-482 19-62 (226)
334 PRK13546 teichoic acids export 97.5 0.0001 2.2E-09 80.2 5.3 43 440-482 37-81 (264)
335 PRK05818 DNA polymerase III su 97.5 0.00022 4.7E-09 76.7 7.6 121 449-588 5-147 (261)
336 KOG1970 Checkpoint RAD17-RFC c 97.5 0.0012 2.7E-08 76.3 14.0 30 454-483 113-142 (634)
337 PRK11176 lipid transporter ATP 97.5 0.00014 3E-09 87.7 6.9 46 440-485 356-403 (582)
338 PRK11153 metN DL-methionine tr 97.5 3E-05 6.6E-10 87.4 1.1 44 441-484 19-64 (343)
339 TIGR03522 GldA_ABC_ATP gliding 97.5 8.2E-05 1.8E-09 82.4 4.4 48 437-484 12-61 (301)
340 TIGR03797 NHPM_micro_ABC2 NHPM 97.5 0.00015 3.3E-09 89.3 7.0 55 430-484 454-512 (686)
341 PRK11819 putative ABC transpor 97.5 5.2E-05 1.1E-09 91.0 2.9 54 431-484 10-66 (556)
342 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 2.5E-05 5.4E-10 82.0 0.0 45 440-484 17-63 (218)
343 COG5271 MDN1 AAA ATPase contai 97.5 0.0003 6.5E-09 88.3 8.7 133 452-602 1544-1704(4600)
344 PRK11174 cysteine/glutathione 97.5 0.00015 3.3E-09 87.5 6.4 45 440-485 363-409 (588)
345 cd03233 ABC_PDR_domain1 The pl 97.5 0.00011 2.4E-09 76.5 4.5 44 441-484 21-69 (202)
346 cd03300 ABC_PotA_N PotA is an 97.4 0.00014 3E-09 77.3 5.2 45 440-484 13-59 (232)
347 PRK13640 cbiO cobalt transport 97.4 8.8E-05 1.9E-09 81.4 3.6 38 442-479 22-61 (282)
348 KOG0057 Mitochondrial Fe/S clu 97.4 0.0004 8.6E-09 80.4 8.9 119 441-567 366-519 (591)
349 cd03254 ABCC_Glucan_exporter_l 97.4 0.00037 8.1E-09 73.7 8.2 43 442-484 18-62 (229)
350 COG4987 CydC ABC-type transpor 97.4 0.00017 3.7E-09 83.2 5.9 60 427-486 336-399 (573)
351 TIGR03796 NHPM_micro_ABC1 NHPM 97.4 0.00023 5E-09 88.0 7.5 56 429-484 479-538 (710)
352 cd03235 ABC_Metallic_Cations A 97.4 4.8E-05 1.1E-09 79.6 1.2 50 435-484 7-58 (213)
353 TIGR03608 L_ocin_972_ABC putat 97.4 4.8E-05 1E-09 79.1 1.0 49 437-485 8-58 (206)
354 TIGR02237 recomb_radB DNA repa 97.4 0.00037 8.1E-09 72.6 7.6 113 449-564 8-148 (209)
355 cd03217 ABC_FeS_Assembly ABC-t 97.4 0.00018 3.9E-09 74.8 5.1 44 440-483 13-60 (200)
356 COG4178 ABC-type uncharacteriz 97.4 0.00025 5.5E-09 84.0 6.9 116 441-566 407-546 (604)
357 PRK13635 cbiO cobalt transport 97.4 0.00012 2.6E-09 80.2 4.0 43 442-484 22-66 (279)
358 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.4 0.00013 2.9E-09 77.2 4.1 58 428-485 23-82 (224)
359 cd03261 ABC_Org_Solvent_Resist 97.4 3.3E-05 7.1E-10 82.2 -0.6 48 437-484 10-59 (235)
360 PF00910 RNA_helicase: RNA hel 97.4 0.00014 3.1E-09 67.9 3.8 25 454-478 1-25 (107)
361 PRK13647 cbiO cobalt transport 97.4 0.00014 3.1E-09 79.4 4.3 44 441-484 19-64 (274)
362 cd03294 ABC_Pro_Gly_Bertaine T 97.4 0.00015 3.2E-09 79.1 4.4 55 430-484 27-83 (269)
363 PRK13650 cbiO cobalt transport 97.4 0.00013 2.9E-09 79.8 4.1 43 442-484 22-66 (279)
364 PRK10851 sulfate/thiosulfate t 97.4 0.00015 3.3E-09 82.1 4.7 45 440-484 15-61 (353)
365 cd03258 ABC_MetN_methionine_tr 97.4 4.7E-05 1E-09 80.9 0.4 44 441-484 19-64 (233)
366 KOG0482 DNA replication licens 97.4 0.0035 7.7E-08 71.7 15.0 226 418-661 342-641 (721)
367 COG4604 CeuD ABC-type enteroch 97.4 0.00029 6.2E-09 72.0 5.8 58 429-486 3-62 (252)
368 TIGR02315 ABC_phnC phosphonate 97.4 5.3E-05 1.2E-09 80.9 0.6 46 439-484 14-61 (243)
369 cd03237 ABC_RNaseL_inhibitor_d 97.4 0.00041 8.8E-09 74.7 7.4 32 454-485 28-59 (246)
370 TIGR03719 ABC_ABC_ChvD ATP-bin 97.3 0.0001 2.2E-09 88.4 3.0 53 432-484 9-64 (552)
371 cd03232 ABC_PDR_domain2 The pl 97.3 9.8E-05 2.1E-09 76.2 2.4 35 441-475 21-57 (192)
372 PRK13643 cbiO cobalt transport 97.3 0.00013 2.8E-09 80.3 3.5 43 442-484 21-65 (288)
373 PRK10247 putative ABC transpor 97.3 6.5E-05 1.4E-09 79.5 1.1 53 433-485 13-67 (225)
374 TIGR03269 met_CoM_red_A2 methy 97.3 5.9E-05 1.3E-09 89.8 0.8 47 437-483 10-60 (520)
375 PRK13644 cbiO cobalt transport 97.3 0.00013 2.9E-09 79.7 3.4 43 441-483 16-60 (274)
376 cd03219 ABC_Mj1267_LivG_branch 97.3 5.1E-05 1.1E-09 80.7 0.1 48 437-484 10-59 (236)
377 TIGR02203 MsbA_lipidA lipid A 97.3 0.00031 6.8E-09 84.5 6.9 45 441-485 346-392 (571)
378 TIGR02858 spore_III_AA stage I 97.3 0.00032 6.9E-09 76.4 6.2 68 452-519 112-203 (270)
379 PRK13651 cobalt transporter AT 97.3 0.00014 3E-09 80.8 3.4 43 442-484 22-66 (305)
380 PF12775 AAA_7: P-loop contain 97.3 0.00029 6.3E-09 76.9 5.8 142 452-603 34-195 (272)
381 COG3638 ABC-type phosphate/pho 97.3 0.00011 2.4E-09 77.1 2.3 55 431-485 7-64 (258)
382 cd03224 ABC_TM1139_LivF_branch 97.3 4.9E-05 1.1E-09 79.9 -0.3 48 437-484 10-59 (222)
383 cd03293 ABC_NrtD_SsuB_transpor 97.3 4.8E-05 1E-09 80.1 -0.4 44 441-484 18-63 (220)
384 cd03257 ABC_NikE_OppD_transpor 97.3 4.6E-05 9.9E-10 80.5 -0.7 44 441-484 19-64 (228)
385 PRK13409 putative ATPase RIL; 97.3 0.0004 8.7E-09 83.9 7.3 42 443-484 355-398 (590)
386 TIGR03375 type_I_sec_LssB type 97.3 0.00039 8.5E-09 85.8 7.4 55 431-485 467-525 (694)
387 TIGR03410 urea_trans_UrtE urea 97.3 4.4E-05 9.6E-10 80.9 -0.9 49 437-485 10-60 (230)
388 cd03296 ABC_CysA_sulfate_impor 97.3 6.2E-05 1.3E-09 80.3 0.2 49 437-485 12-62 (239)
389 cd03263 ABC_subfamily_A The AB 97.3 5.5E-05 1.2E-09 79.5 -0.3 45 440-484 15-61 (220)
390 TIGR01277 thiQ thiamine ABC tr 97.3 0.0003 6.4E-09 73.8 5.2 41 444-484 15-57 (213)
391 TIGR01166 cbiO cobalt transpor 97.3 0.00018 3.8E-09 74.0 3.4 45 440-484 5-51 (190)
392 TIGR02314 ABC_MetN D-methionin 97.3 0.0002 4.3E-09 80.8 4.0 44 441-484 19-64 (343)
393 TIGR02673 FtsE cell division A 97.3 7.5E-05 1.6E-09 78.1 0.6 44 441-484 16-61 (214)
394 cd03256 ABC_PhnC_transporter A 97.3 5.9E-05 1.3E-09 80.4 -0.2 45 440-484 14-60 (241)
395 PF13207 AAA_17: AAA domain; P 97.3 0.00017 3.8E-09 68.1 3.0 30 454-483 2-31 (121)
396 PRK13636 cbiO cobalt transport 97.3 0.0002 4.4E-09 78.6 3.9 44 441-484 20-65 (283)
397 KOG0062 ATPase component of AB 97.3 0.00035 7.5E-09 80.2 5.8 128 432-568 85-231 (582)
398 cd03260 ABC_PstB_phosphate_tra 97.3 6.1E-05 1.3E-09 79.7 -0.3 46 439-484 12-64 (227)
399 PRK10895 lipopolysaccharide AB 97.3 8.5E-05 1.8E-09 79.3 0.8 48 437-484 13-62 (241)
400 PLN03210 Resistant to P. syrin 97.2 0.0016 3.4E-08 84.9 12.4 176 415-624 181-390 (1153)
401 COG1117 PstB ABC-type phosphat 97.2 0.00036 7.9E-09 72.2 5.2 47 428-474 8-56 (253)
402 PF00005 ABC_tran: ABC transpo 97.2 0.00015 3.2E-09 70.2 2.2 42 444-485 2-45 (137)
403 PF00931 NB-ARC: NB-ARC domain 97.2 0.00044 9.6E-09 75.3 6.3 148 454-623 22-196 (287)
404 COG3283 TyrR Transcriptional r 97.2 0.0015 3.3E-08 72.0 10.1 178 454-652 230-443 (511)
405 TIGR01193 bacteriocin_ABC ABC- 97.2 0.00047 1E-08 85.3 7.2 56 430-485 476-534 (708)
406 TIGR00958 3a01208 Conjugate Tr 97.2 0.0005 1.1E-08 85.1 7.3 55 430-484 481-540 (711)
407 COG4608 AppF ABC-type oligopep 97.2 0.00037 8E-09 74.9 5.3 82 443-524 29-141 (268)
408 PF12774 AAA_6: Hydrolytic ATP 97.2 0.00046 1E-08 73.5 6.0 66 452-524 33-98 (231)
409 TIGR03864 PQQ_ABC_ATP ABC tran 97.2 8.9E-05 1.9E-09 79.0 0.6 48 437-484 11-60 (236)
410 PRK11160 cysteine/glutathione 97.2 0.00071 1.5E-08 81.6 8.3 56 430-485 341-400 (574)
411 PRK11264 putative amino-acid A 97.2 0.0001 2.2E-09 79.1 0.9 49 436-484 12-62 (250)
412 cd03265 ABC_DrrA DrrA is the A 97.2 0.00023 5E-09 74.9 3.5 48 437-484 10-59 (220)
413 cd03262 ABC_HisP_GlnQ_permease 97.2 0.00022 4.8E-09 74.5 3.3 45 440-484 13-59 (213)
414 PRK13657 cyclic beta-1,2-gluca 97.2 0.00048 1E-08 83.3 6.6 43 441-483 349-393 (588)
415 TIGR02323 CP_lyasePhnK phospho 97.2 9.3E-05 2E-09 79.6 0.4 46 440-485 16-63 (253)
416 PRK07132 DNA polymerase III su 97.2 0.00072 1.5E-08 74.8 7.2 125 449-599 16-160 (299)
417 TIGR01978 sufC FeS assembly AT 97.2 8.5E-05 1.8E-09 79.3 -0.2 48 437-484 10-61 (243)
418 cd03299 ABC_ModC_like Archeal 97.2 0.00036 7.9E-09 74.3 4.7 42 442-483 14-57 (235)
419 cd01131 PilT Pilus retraction 97.2 0.00047 1E-08 71.7 5.4 67 454-520 4-84 (198)
420 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.00073 1.6E-08 70.3 6.8 27 446-472 20-49 (200)
421 TIGR02857 CydD thiol reductant 97.2 0.0007 1.5E-08 80.8 7.5 44 441-484 336-381 (529)
422 PRK11300 livG leucine/isoleuci 97.2 5.7E-05 1.2E-09 81.3 -1.6 50 436-485 14-65 (255)
423 TIGR03005 ectoine_ehuA ectoine 97.2 7.9E-05 1.7E-09 80.2 -0.6 46 439-484 12-59 (252)
424 cd01124 KaiC KaiC is a circadi 97.2 0.0019 4E-08 65.8 9.5 32 454-485 2-36 (187)
425 PRK11831 putative ABC transpor 97.2 0.0001 2.2E-09 80.3 0.3 48 437-484 17-66 (269)
426 cd01130 VirB11-like_ATPase Typ 97.2 0.00044 9.5E-09 71.1 4.9 68 453-520 27-110 (186)
427 PRK11248 tauB taurine transpor 97.2 0.00025 5.5E-09 76.6 3.2 45 440-484 14-60 (255)
428 KOG0058 Peptide exporter, ABC 97.2 0.00093 2E-08 79.8 8.1 133 428-567 466-636 (716)
429 COG1137 YhbG ABC-type (unclass 97.1 0.00029 6.3E-09 72.2 3.3 56 430-485 7-64 (243)
430 COG1101 PhnK ABC-type uncharac 97.1 0.00096 2.1E-08 69.2 7.0 84 443-527 22-110 (263)
431 COG4988 CydD ABC-type transpor 97.1 0.00041 8.8E-09 81.2 4.9 56 430-485 323-381 (559)
432 TIGR03411 urea_trans_UrtD urea 97.1 0.00012 2.6E-09 78.2 0.5 49 437-485 12-62 (242)
433 PRK11701 phnK phosphonate C-P 97.1 0.00012 2.6E-09 79.1 0.4 49 436-484 15-65 (258)
434 PRK13538 cytochrome c biogenes 97.1 0.00028 6.1E-09 73.5 3.2 46 439-484 13-60 (204)
435 PRK10619 histidine/lysine/argi 97.1 8.2E-05 1.8E-09 80.4 -0.8 54 432-485 10-65 (257)
436 PRK10908 cell division protein 97.1 0.00012 2.7E-09 77.1 0.5 44 441-484 16-61 (222)
437 cd01121 Sms Sms (bacterial rad 97.1 0.0018 4E-08 73.7 10.0 71 454-524 85-172 (372)
438 TIGR02204 MsbA_rel ABC transpo 97.1 0.0007 1.5E-08 81.6 6.9 43 442-484 355-399 (576)
439 cd03243 ABC_MutS_homologs The 97.1 0.0008 1.7E-08 70.1 6.4 20 454-473 32-51 (202)
440 PRK11124 artP arginine transpo 97.1 0.00032 6.9E-09 75.0 3.5 47 439-485 14-62 (242)
441 PRK13545 tagH teichoic acids e 97.1 0.00047 1E-08 81.0 5.1 43 442-484 39-83 (549)
442 cd03292 ABC_FtsE_transporter F 97.1 0.00033 7.1E-09 73.3 3.3 44 441-484 15-60 (214)
443 PRK13540 cytochrome c biogenes 97.1 0.00034 7.4E-09 72.6 3.4 48 437-484 11-60 (200)
444 PRK14250 phosphate ABC transpo 97.1 0.00033 7.1E-09 74.9 3.3 45 440-484 16-62 (241)
445 PRK08118 topology modulation p 97.1 0.00061 1.3E-08 69.0 5.0 32 453-484 3-34 (167)
446 cd03264 ABC_drug_resistance_li 97.1 0.00034 7.4E-09 73.1 3.3 44 441-484 14-58 (211)
447 PRK10789 putative multidrug tr 97.1 0.00096 2.1E-08 80.5 7.5 44 441-484 329-374 (569)
448 TIGR02211 LolD_lipo_ex lipopro 97.1 0.00034 7.3E-09 73.6 3.2 44 441-484 19-64 (221)
449 PRK13547 hmuV hemin importer A 97.1 0.00011 2.3E-09 80.4 -0.6 42 437-478 11-54 (272)
450 TIGR01846 type_I_sec_HlyB type 97.1 0.00085 1.9E-08 82.8 7.1 57 429-485 457-517 (694)
451 PRK11629 lolD lipoprotein tran 97.1 0.00036 7.8E-09 74.2 3.3 45 441-485 23-69 (233)
452 PRK09493 glnQ glutamine ABC tr 97.1 0.00037 8.1E-09 74.4 3.4 47 439-485 13-61 (240)
453 TIGR01189 ccmA heme ABC export 97.1 0.00037 8E-09 72.2 3.3 46 439-484 12-59 (198)
454 TIGR03873 F420-0_ABC_ATP propo 97.1 0.00011 2.4E-09 79.3 -0.6 48 437-484 11-60 (256)
455 COG3284 AcoR Transcriptional a 97.1 0.00083 1.8E-08 79.2 6.5 183 454-656 339-555 (606)
456 COG0396 sufC Cysteine desulfur 97.1 0.002 4.3E-08 67.6 8.5 35 441-475 18-54 (251)
457 PRK10790 putative multidrug tr 97.1 0.0009 2E-08 81.0 7.0 44 441-484 355-400 (592)
458 COG4525 TauB ABC-type taurine 97.1 0.00092 2E-08 68.3 5.8 43 442-484 20-64 (259)
459 PRK15079 oligopeptide ABC tran 97.0 0.00059 1.3E-08 76.7 4.9 44 441-484 35-80 (331)
460 PRK10584 putative ABC transpor 97.0 0.0004 8.6E-09 73.5 3.3 43 442-484 25-69 (228)
461 TIGR03740 galliderm_ABC gallid 97.0 0.00013 2.7E-09 77.1 -0.5 45 440-484 13-59 (223)
462 PRK11614 livF leucine/isoleuci 97.0 0.00016 3.4E-09 77.1 0.2 48 437-484 15-64 (237)
463 PRK10522 multidrug transporter 97.0 0.0013 2.8E-08 78.9 8.0 44 441-484 337-382 (547)
464 COG1618 Predicted nucleotide k 97.0 0.001 2.2E-08 66.1 5.7 24 452-475 6-29 (179)
465 TIGR01842 type_I_sec_PrtD type 97.0 0.001 2.2E-08 79.8 7.0 44 441-484 332-377 (544)
466 PRK11231 fecE iron-dicitrate t 97.0 0.00016 3.4E-09 78.1 0.0 48 437-484 12-61 (255)
467 PRK10575 iron-hydroxamate tran 97.0 0.00016 3.5E-09 78.5 0.2 54 431-484 15-70 (265)
468 cd03295 ABC_OpuCA_Osmoprotecti 97.0 0.00042 9.1E-09 74.1 3.3 44 441-484 15-60 (242)
469 PRK07261 topology modulation p 97.0 0.00079 1.7E-08 68.4 5.1 31 454-484 3-33 (171)
470 PRK13548 hmuV hemin importer A 97.0 0.0004 8.7E-09 75.2 3.2 48 437-484 12-61 (258)
471 KOG0060 Long-chain acyl-CoA tr 97.0 0.00056 1.2E-08 79.5 4.4 153 441-602 449-635 (659)
472 TIGR01192 chvA glucan exporter 97.0 0.0011 2.3E-08 80.3 7.1 43 442-484 350-394 (585)
473 COG3854 SpoIIIAA ncharacterize 97.0 0.0026 5.5E-08 66.6 8.6 68 454-521 140-229 (308)
474 PRK14267 phosphate ABC transpo 97.0 0.00019 4.1E-09 77.2 0.3 48 437-484 14-68 (253)
475 PRK12726 flagellar biosynthesi 97.0 0.02 4.3E-07 65.0 16.1 35 453-487 208-245 (407)
476 PRK14242 phosphate transporter 97.0 0.00022 4.7E-09 76.7 0.7 40 437-476 16-57 (253)
477 PRK14275 phosphate ABC transpo 97.0 0.00014 3E-09 80.0 -1.0 52 424-475 36-89 (286)
478 TIGR01069 mutS2 MutS2 family p 97.0 0.0053 1.1E-07 76.3 12.6 22 453-474 324-345 (771)
479 PRK14247 phosphate ABC transpo 97.0 0.00023 5E-09 76.5 0.7 48 437-484 13-67 (250)
480 TIGR02688 conserved hypothetic 97.0 0.0028 6.1E-08 72.4 9.3 62 452-522 210-272 (449)
481 PRK10253 iron-enterobactin tra 97.0 0.0005 1.1E-08 74.7 3.2 48 437-484 17-66 (265)
482 PRK15177 Vi polysaccharide exp 97.0 0.00043 9.4E-09 72.7 2.7 40 443-482 3-44 (213)
483 PRK10070 glycine betaine trans 97.0 0.00051 1.1E-08 79.0 3.4 56 429-484 30-87 (400)
484 PRK11823 DNA repair protein Ra 97.0 0.0031 6.8E-08 73.7 10.0 71 454-524 83-170 (446)
485 TIGR00972 3a0107s01c2 phosphat 96.9 0.00057 1.2E-08 73.3 3.5 44 441-484 15-65 (247)
486 TIGR01618 phage_P_loop phage n 96.9 0.0017 3.7E-08 68.6 7.0 23 451-473 12-34 (220)
487 TIGR01184 ntrCD nitrate transp 96.9 0.00052 1.1E-08 72.9 3.2 40 445-484 3-44 (230)
488 PRK10261 glutathione transport 96.9 0.00074 1.6E-08 82.3 4.8 120 442-567 339-495 (623)
489 cd03250 ABCC_MRP_domain1 Domai 96.9 0.00055 1.2E-08 71.2 3.2 45 441-485 19-65 (204)
490 COG1132 MdlB ABC-type multidru 96.9 0.0013 2.8E-08 79.3 6.8 55 430-484 331-388 (567)
491 PRK11889 flhF flagellar biosyn 96.9 0.0017 3.7E-08 73.7 7.2 36 451-486 241-279 (436)
492 PRK14274 phosphate ABC transpo 96.9 0.00014 3.1E-09 78.6 -1.3 45 432-476 17-63 (259)
493 COG4152 ABC-type uncharacteriz 96.9 0.00031 6.8E-09 74.0 1.3 92 430-524 5-98 (300)
494 PF13671 AAA_33: AAA domain; P 96.9 0.0013 2.9E-08 63.7 5.7 35 454-490 2-36 (143)
495 cd03245 ABCC_bacteriocin_expor 96.9 0.00053 1.2E-08 72.1 3.1 43 442-484 19-63 (220)
496 COG4181 Predicted ABC-type tra 96.9 0.0024 5.2E-08 64.1 7.4 56 428-483 7-68 (228)
497 TIGR02770 nickel_nikD nickel i 96.9 0.00058 1.3E-08 72.5 3.3 41 444-484 3-49 (230)
498 PRK14262 phosphate ABC transpo 96.9 0.00025 5.4E-09 76.2 0.5 40 437-476 13-54 (250)
499 cd03251 ABCC_MsbA MsbA is an e 96.9 0.00058 1.2E-08 72.5 3.2 44 441-484 16-61 (234)
500 COG1135 AbcC ABC-type metal io 96.9 0.00037 8E-09 75.8 1.7 42 441-482 20-63 (339)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-85 Score=720.84 Aligned_cols=429 Identities=40% Similarity=0.589 Sum_probs=408.1
Q ss_pred ccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
+...++.|+++.|+++.+.++++++.++++|..|.++|.++|+||||+||||||||.|||++||+.++||++.++++|-+
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L 569 (884)
+|+|++..+++.+|..++..+||||||||||+++..|.. +...+.++++|+||.+||+|..+.+||||++||.|+.|
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~---~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNP---SDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCc---cHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 999999999999999999999999999999999988753 34458999999999999999999999999999999999
Q ss_pred CccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 002754 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 570 dpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~e 649 (884)
|++|+||||||++|.+|.||...|.+||+.|+.++.+..++|+..||+-|.||+|+||++++|.|+..|+.++...+|+.
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~ 532 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMK 532 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcccccc--chhhhHHHHHHHHHHHHHHHhCCCCCCcceeeecCCCCCcccceeeccccccccccccC
Q 002754 650 DLLQAAQIEERGMLDRKER--SSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLS 727 (884)
Q Consensus 650 di~~Al~~~~~g~~~~~~~--~~~~~~~vA~hEaGhAvva~ll~~~~~v~~vsI~pr~g~~lG~~~~~~~e~~~~~~~~T 727 (884)
|++.|-+++.+| ++++.. +++.++..||||.|||||+.++.+..|++++||.|| |.++|.+.+.|+. |.+.+|
T Consensus 533 ~LE~akDrIlMG-~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPR-G~sLG~t~~LPe~---D~~~~T 607 (752)
T KOG0734|consen 533 HLEFAKDRILMG-PERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPR-GPSLGHTSQLPEK---DRYSIT 607 (752)
T ss_pred HHhhhhhheeec-ccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccC-CccccceeecCcc---chhhHH
Confidence 999999999999 777665 888899999999999999999999999999999999 9999999999987 889999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHcCCCcccccccchHHHHHHHHHHHHh-cCCCCCCCCCCc--------hhhHhhHHHHHH
Q 002754 728 RQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKHFGLSN--------FWVADRINEIDT 798 (884)
Q Consensus 728 r~~l~~~I~v~LaGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gms~~~~g~~~--------~~~~~~~~~id~ 798 (884)
|.++++++.||||||+|||++||.|.+|+||++||++||.+|+.||+ ||||+.. |... ....++...||.
T Consensus 608 k~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~v-G~v~~~~~~~~~s~~~~t~~lida 686 (752)
T KOG0734|consen 608 KAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKV-GPVTLSAEDNSSSLSPRTQELIDA 686 (752)
T ss_pred HHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccc-cceeeeccCCCCCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999 9999996 3322 344667778999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhhc
Q 002754 799 EALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELH 847 (884)
Q Consensus 799 ev~~lL~~ay~rA~~iL~~nr~~l~~la~~LleketL~~~ei~~il~~~ 847 (884)
||.++|+++|+||+.||+.|...|++||++||++|||+++||.+++.+.
T Consensus 687 Ei~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~ 735 (752)
T KOG0734|consen 687 EIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGK 735 (752)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999765
No 2
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-77 Score=693.36 Aligned_cols=445 Identities=46% Similarity=0.685 Sum_probs=413.6
Q ss_pred ccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
+....+.|.|++|+++.+.++.+++.++++|..|.++|.++|+|+||+||||||||.|||++|++.+.||+.+++++|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcC-CCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCC
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG-LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~-~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~ 568 (884)
.++|.+..+++.+|..++.+.|||+|+||||.++..++ .+...++.+...++|+||.+||++....+|+|+++||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999998884 34557788889999999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 002754 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 647 (884)
Q Consensus 569 LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It 647 (884)
+|++|+||||||++|+++.|+..+|.+|++.|+++..+. +++++..+|..|+||+|+||.++|++|+..|.+++...|+
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~ 542 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIG 542 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999999885 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcccc-ccchhhhHHHHHHHHHHHHHHHhCCCCCCcceeeecCCCCCcccceeecccccccccccc
Q 002754 648 TDDLLQAAQIEERGMLDRK-ERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGML 726 (884)
Q Consensus 648 ~edi~~Al~~~~~g~~~~~-~~~~~~~~~vA~hEaGhAvva~ll~~~~~v~~vsI~pr~g~~lG~~~~~~~e~~~~~~~~ 726 (884)
..|+..|++++..|+..+. ..+.++++.+|+||||||+++|++++.+++.+|||.| |+++||++|.|.+ .+++
T Consensus 543 ~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP--GqalG~a~~~P~~----~~l~ 616 (774)
T KOG0731|consen 543 TKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP--GQALGYAQYLPTD----DYLL 616 (774)
T ss_pred hhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc--CCccceEEECCcc----cccc
Confidence 9999999999999953332 3388999999999999999999999999999999999 5599999999987 4899
Q ss_pred CHHHHHHHHHHhhhhhhHHHHHcCCCcccccccchHHHHHHHHHHHHh-cCCCCCC--C----------CCCchhhHhhH
Q 002754 727 SRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH--F----------GLSNFWVADRI 793 (884)
Q Consensus 727 Tr~~l~~~I~v~LaGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gms~~~--~----------g~~~~~~~~~~ 793 (884)
|+++|+++|++.||||||||++|| +++|||+++|+++||.+|+.||. |||+++. + ....+|+..+.
T Consensus 617 sk~ql~~rm~m~LGGRaAEev~fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~ 695 (774)
T KOG0731|consen 617 SKEQLFDRMVMALGGRAAEEVVFG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTA 695 (774)
T ss_pred cHHHHHHHHHHHhCcchhhheecC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHH
Confidence 999999999999999999999999 78999999999999999999999 9999886 1 11236778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhhcCCCCCCCCChhhHH
Q 002754 794 NEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELHGSLEPMPPSIVDIR 861 (884)
Q Consensus 794 ~~id~ev~~lL~~ay~rA~~iL~~nr~~l~~la~~LleketL~~~ei~~il~~~~~~~~~p~~~~~~r 861 (884)
..||.+|.++++.||++|.++|.+|++.++.||+.||++++|+++++.+++..++...+....+.+..
T Consensus 696 ~~Id~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~~~~~~~~~~ 763 (774)
T KOG0731|consen 696 QLIDTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMPEKNVIVEQK 763 (774)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCcccccchhhhhc
Confidence 99999999999999999999999999999999999999999999999999998877666555554443
No 3
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-76 Score=676.21 Aligned_cols=432 Identities=47% Similarity=0.729 Sum_probs=412.2
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhh
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~ 490 (884)
....+.|.++.|.++.+.++.+++.++.++..|..+|..+|+|++|+||||||||.|||++|++.+.||+++++++|+++
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCC
Q 002754 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (884)
Q Consensus 491 ~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~Ld 570 (884)
|+|.+..+++.+|.++++++|||+||||||+.+..|+...+.|+.+..+++|+||.+||++..+.+|+||++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999988778889999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 002754 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 650 (884)
Q Consensus 571 paLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~ed 650 (884)
|+|+||||||++|.++.||...|.+|++.|+++.++..++++..+|+.|+||+|+||.+++|+|++.|.++++..|++.|
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~ 382 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRD 382 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccccc--cchhhhHHHHHHHHHHHHHHHhCCCCCCcceeeecCCCCCcccceeeccccccccccccCH
Q 002754 651 LLQAAQIEERGMLDRKE--RSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSR 728 (884)
Q Consensus 651 i~~Al~~~~~g~~~~~~--~~~~~~~~vA~hEaGhAvva~ll~~~~~v~~vsI~pr~g~~lG~~~~~~~e~~~~~~~~Tr 728 (884)
|.+|.+++..| +.++. .++.+++.+||||+|||+++++++..++++++||+|| |+++||+.+.|.+ |.+++|+
T Consensus 383 i~ea~drv~~G-~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPr-G~alG~t~~~Pe~---d~~l~sk 457 (596)
T COG0465 383 IEEAIDRVIAG-PERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPR-GRALGYTLFLPEE---DKYLMSK 457 (596)
T ss_pred hHHHHHHHhcC-cCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccC-chhhcchhcCCcc---ccccccH
Confidence 99999999999 55544 4899999999999999999999999999999999999 8999999999988 7899999
Q ss_pred HHHHHHHHHhhhhhhHHHHHcCCCcccccccchHHHHHHHHHHHHh-cCCCCCC----CCCCc-----------hhhHhh
Q 002754 729 QSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH----FGLSN-----------FWVADR 792 (884)
Q Consensus 729 ~~l~~~I~v~LaGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gms~~~----~g~~~-----------~~~~~~ 792 (884)
.+++++|+++||||||||++||. ++|||+++|+++||.+|+.||+ |||++.. |+... .|++.+
T Consensus 458 ~~l~~~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~t 536 (596)
T COG0465 458 EELLDRIDVLLGGRAAEELIFGY-EITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEET 536 (596)
T ss_pred HHHHHHHHHHhCCcHhhhhhhcc-cccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHH
Confidence 99999999999999999999996 6999999999999999999999 9999864 22211 377889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhhcC
Q 002754 793 INEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELHG 848 (884)
Q Consensus 793 ~~~id~ev~~lL~~ay~rA~~iL~~nr~~l~~la~~LleketL~~~ei~~il~~~~ 848 (884)
...||.+|++++.++|++|++||.+|++.++.+++.|+++|||++++|.+|+....
T Consensus 537 a~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 537 AQEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999998654
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=3.4e-71 Score=655.19 Aligned_cols=435 Identities=42% Similarity=0.654 Sum_probs=400.0
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhh
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~ 491 (884)
...+.|+++.|+++.+.++.+++..+.++..+..+|...|+|+||+||||||||+|++++|++++.+++.++++++...+
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 45789999999999999999999999999899999999999999999999999999999999999999999999999989
Q ss_pred ccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCc
Q 002754 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (884)
Q Consensus 492 ~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~Ldp 571 (884)
.|.....++.+|..++...|||+||||+|.++..++...++++.....+++.||.+||++..+.+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 88888888999999999999999999999998776654455666777899999999999988889999999999999999
Q ss_pred cCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 002754 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (884)
Q Consensus 572 aLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi 651 (884)
+++||||||++|.|++|+.++|.+|++.+++......++++..+|..+.||+++||.++|++|+..|.+++...||.+||
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl 416 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEI 416 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 99999999999999999999999999999998888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccccccchhhhHHHHHHHHHHHHHHHhCCCCCCcceeeecCCCCCcccceeeccccccccccccCHHHH
Q 002754 652 LQAAQIEERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSL 731 (884)
Q Consensus 652 ~~Al~~~~~g~~~~~~~~~~~~~~vA~hEaGhAvva~ll~~~~~v~~vsI~pr~g~~lG~~~~~~~e~~~~~~~~Tr~~l 731 (884)
..|++++..|...+...++.+++++||||+||||+++++++.++|++|||.|| |+++||+++.|.+ +.+++||.+|
T Consensus 417 ~~Ai~rv~~g~~~~~~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~pr-g~~~G~~~~~p~~---~~~~~t~~~l 492 (638)
T CHL00176 417 DTAIDRVIAGLEGTPLEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPR-GQAKGLTWFTPEE---DQSLVSRSQI 492 (638)
T ss_pred HHHHHHHHhhhccCccccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeec-CCCCCceEecCCc---ccccccHHHH
Confidence 99999998884444444778899999999999999999999999999999999 8899999999876 6788999999
Q ss_pred HHHHHHhhhhhhHHHHHcCCCcccccccchHHHHHHHHHHHHh-cCCCCCC---CCC--C------------chhhHhhH
Q 002754 732 LDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH---FGL--S------------NFWVADRI 793 (884)
Q Consensus 732 ~~~I~v~LaGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gms~~~---~g~--~------------~~~~~~~~ 793 (884)
+++|++||||||||+++||++++|+|+++||++||.+|+.||+ |||+..+ +.. . ..+++++.
T Consensus 493 ~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 572 (638)
T CHL00176 493 LARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSSIGPISLESNNSTDPFLGRFMQRNSEYSEEIA 572 (638)
T ss_pred HHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCcCCceeecCCCCcccccccccccccCcCHHHH
Confidence 9999999999999999999878999999999999999999999 9998533 110 0 12456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhhcCCC
Q 002754 794 NEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELHGSL 850 (884)
Q Consensus 794 ~~id~ev~~lL~~ay~rA~~iL~~nr~~l~~la~~LleketL~~~ei~~il~~~~~~ 850 (884)
..+|.+|+++|++||++|++||++||+.|++||++|+++|+|+++||.+|++.+...
T Consensus 573 ~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~~ 629 (638)
T CHL00176 573 DKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTIL 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCCC
Confidence 899999999999999999999999999999999999999999999999999987643
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.6e-68 Score=637.11 Aligned_cols=432 Identities=39% Similarity=0.622 Sum_probs=395.4
Q ss_pred cccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhc
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 492 (884)
....|.++.|+...+.++.+++..+..+..+..++..+|+|++|+||||||||+++++++++++.+++.++++++...+.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 45568888999999999999999888877788889999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCcc
Q 002754 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 572 (884)
Q Consensus 493 g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~Ldpa 572 (884)
|.+...++.+|..++...|||+||||+|.++..++...+++......+++.||.+||++..+.+++||+|||+++.+||+
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 99888999999999999999999999999988775544445566778999999999999888999999999999999999
Q ss_pred CCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 002754 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (884)
Q Consensus 573 Llr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~ 652 (884)
++||||||++|.|+.|+.++|.+|++.|+.+.++..++++..++..+.||||+||.++|++|+..|.+.++..|+.+|+.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~ 386 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFE 386 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcccc-ccchhhhHHHHHHHHHHHHHHHhCCCCCCcceeeecCCCCCcccceeeccccccccccccCHHHH
Q 002754 653 QAAQIEERGMLDRK-ERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSL 731 (884)
Q Consensus 653 ~Al~~~~~g~~~~~-~~~~~~~~~vA~hEaGhAvva~ll~~~~~v~~vsI~pr~g~~lG~~~~~~~e~~~~~~~~Tr~~l 731 (884)
.|++++..|...+. ..+.++++.+|+||+||||++++++..+++++|||+|| |.++||+.+.|.+ +...+||.+|
T Consensus 387 ~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~pr-g~~~g~~~~~~~~---~~~~~~~~~l 462 (644)
T PRK10733 387 KAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPR-GRALGVTFFLPEG---DAISASRQKL 462 (644)
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEecc-CCCcceeEECCCc---ccccccHHHH
Confidence 99999988733222 23778899999999999999999999999999999999 8899999998876 5667899999
Q ss_pred HHHHHHhhhhhhHHHHHcCCCcccccccchHHHHHHHHHHHHh-cCCCCCC----CCCC-------------chhhHhhH
Q 002754 732 LDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH----FGLS-------------NFWVADRI 793 (884)
Q Consensus 732 ~~~I~v~LaGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gms~~~----~g~~-------------~~~~~~~~ 793 (884)
+++|+++|||||||+++||.+++|||+++||++||.+|+.||+ ||||+.. |... ..+++++.
T Consensus 463 ~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~ 542 (644)
T PRK10733 463 ESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETA 542 (644)
T ss_pred HHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHH
Confidence 9999999999999999999888999999999999999999999 9999864 2111 13556788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHhhcC
Q 002754 794 NEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELHG 848 (884)
Q Consensus 794 ~~id~ev~~lL~~ay~rA~~iL~~nr~~l~~la~~LleketL~~~ei~~il~~~~ 848 (884)
..+|.+|+++|++||++|++||++||+.|++||++|+++|||+++||.+|+..+.
T Consensus 543 ~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~~ 597 (644)
T PRK10733 543 RIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRD 597 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999999999999999999998764
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=5.5e-66 Score=603.07 Aligned_cols=431 Identities=47% Similarity=0.722 Sum_probs=391.7
Q ss_pred cccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhh
Q 002754 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (884)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 488 (884)
....+.+.|+++.|++..+.++.+++..+.++..+...|...|+|+||+||||||||+|+++||++++.+++.++++++.
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 34457889999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCC
Q 002754 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (884)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~ 568 (884)
..+.|.....++.+|+.++...||||||||+|.+...+.....++......+++.||.+||++....+++||+|||+++.
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV 205 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh
Confidence 99999988899999999999999999999999998776543334456667889999999999988889999999999999
Q ss_pred CCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 002754 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (884)
Q Consensus 569 LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~ 648 (884)
+||+++||||||+.|+|+.|+.++|.+|++.++.......++++..++..+.||+++||.++|++|+..|.++++..|+.
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~ 285 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITM 285 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999999998877788899999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHHcCCccc-cccchhhhHHHHHHHHHHHHHHHhCCCCCCcceeeecCCCCCcccceeeccccccccccccC
Q 002754 649 DDLLQAAQIEERGMLDR-KERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLS 727 (884)
Q Consensus 649 edi~~Al~~~~~g~~~~-~~~~~~~~~~vA~hEaGhAvva~ll~~~~~v~~vsI~pr~g~~lG~~~~~~~e~~~~~~~~T 727 (884)
+|+..|++++..|...+ ...++.+++++|+||+||||++++++...+++++||.|+ |..+||+.+.+.+ +.+..|
T Consensus 286 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~pr-g~~~G~~~~~~~~---~~~~~t 361 (495)
T TIGR01241 286 NDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPR-GQALGYTQFLPEE---DKYLYT 361 (495)
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeec-CCccceEEecCcc---ccccCC
Confidence 99999999998873222 233778899999999999999999988889999999999 8899999988765 567889
Q ss_pred HHHHHHHHHHhhhhhhHHHHHcCCCcccccccchHHHHHHHHHHHHh-cCCCCCC----CCC-------------Cchhh
Q 002754 728 RQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH----FGL-------------SNFWV 789 (884)
Q Consensus 728 r~~l~~~I~v~LaGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gms~~~----~g~-------------~~~~~ 789 (884)
+.+++++|+|+|||||||+++||+ +|+|+++|+++||.+|+.||. |||++.. +.. ...++
T Consensus 362 ~~~l~~~i~v~LaGraAE~~~~G~--~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s 439 (495)
T TIGR01241 362 KSQLLAQIAVLLGGRAAEEIIFGE--VTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYS 439 (495)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcC--CCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccC
Confidence 999999999999999999999996 999999999999999999999 9999853 111 11355
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHh
Q 002754 790 ADRINEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVE 845 (884)
Q Consensus 790 ~~~~~~id~ev~~lL~~ay~rA~~iL~~nr~~l~~la~~LleketL~~~ei~~il~ 845 (884)
+.+...+|.+|+++|+++|++|+++|++||++|++||++|+++++|+++||.+|++
T Consensus 440 ~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 440 EETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 66778899999999999999999999999999999999999999999999999974
No 7
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.6e-47 Score=471.49 Aligned_cols=293 Identities=19% Similarity=0.244 Sum_probs=250.0
Q ss_pred cccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhh----------cc--------------------
Q 002754 444 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY----------VG-------------------- 493 (884)
Q Consensus 444 ~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~----------~g-------------------- 493 (884)
.++|+.+|+||||+||||||||.|||+||+++++|++.+++++++..+ +|
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~ 1702 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELL 1702 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhh
Confidence 568899999999999999999999999999999999999999988643 11
Q ss_pred -----------ccch--hhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc---CCCce
Q 002754 494 -----------VGAS--RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---GRGNV 557 (884)
Q Consensus 494 -----------~~~~--~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~---~~~~V 557 (884)
.+.+ .++.+|+.|+.++||||||||||.++... .....++.|+.+|++.. ...+|
T Consensus 1703 e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~~s~~~V 1773 (2281)
T CHL00206 1703 TMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCERCSTRNI 1773 (2281)
T ss_pred hhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccccCCCCCE
Confidence 1112 36789999999999999999999997541 12236899999999763 35689
Q ss_pred EEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHH--ccCCCCCc-ccHHHHHhhCCCCCHHHHHHHHHHH
Q 002754 558 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA--RKKPMADD-VDYLAVASMTDGMVGAELANIVEVA 634 (884)
Q Consensus 558 lVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l--~~~~~~~d-idl~~lA~~t~G~s~adL~~Lv~~A 634 (884)
+||||||+|+.|||||+||||||+.|+|+.|+..+|.+++...+ ++..+..+ +++..+|..|.||+||||+++|++|
T Consensus 1774 IVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEA 1853 (2281)
T CHL00206 1774 LVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEA 1853 (2281)
T ss_pred EEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988643 44444433 6899999999999999999999999
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHcCCccccccchhhhHHHHHHHHHHHHHHHhCCCCCCcceeeec--C---CCCCcc
Q 002754 635 AINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIA--P---RAGREL 709 (884)
Q Consensus 635 ~~~A~~~~~~~It~edi~~Al~~~~~g~~~~~~~~~~~~~~vA~hEaGhAvva~ll~~~~~v~~vsI~--p---r~g~~l 709 (884)
+..|.++++..|+.+++..|++++.+|. .....+..+ +.+++||+|||||+.++++.+++++|||. + +.|.++
T Consensus 1854 aliAirq~ks~Id~~~I~~Al~Rq~~g~-~~~~~~~~~-~~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~y 1931 (2281)
T CHL00206 1854 LSISITQKKSIIDTNTIRSALHRQTWDL-RSQVRSVQD-HGILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSY 1931 (2281)
T ss_pred HHHHHHcCCCccCHHHHHHHHHHHHhhh-hhcccCcch-hhhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcccc
Confidence 9999999999999999999999999983 333333333 35799999999999999999999999995 3 224577
Q ss_pred cceeeccccccccccccCHHHHHHHHHHhhhhhhHHHHHcCCC
Q 002754 710 GYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEG 752 (884)
Q Consensus 710 G~~~~~~~e~~~~~~~~Tr~~l~~~I~v~LaGRAAEel~fG~~ 752 (884)
||++|.+.+ +++++.+++.+|.+||||||||++||+.+
T Consensus 1932 l~~wyle~~-----~~mkk~tiL~~Il~cLAGraAedlwf~~~ 1969 (2281)
T CHL00206 1932 LYKWYFELG-----TSMKKLTILLYLLSCSAGSVAQDLWSLPG 1969 (2281)
T ss_pred eeEeecCCc-----ccCCHHHHHHHHHHHhhhhhhhhhccCcc
Confidence 999998764 68999999999999999999999999763
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-47 Score=405.85 Aligned_cols=252 Identities=46% Similarity=0.760 Sum_probs=244.2
Q ss_pred ccCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhh
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (884)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 488 (884)
.+.+.+++.+++|+++.+.++++++.. +.++++|..+|+.+|+|||||||||||||.|||++|+..+..|+++.+++++
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 356789999999999999999999985 7899999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCC
Q 002754 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (884)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~ 568 (884)
.+|+|.+...++.+|+.|+.+.||||||||||+++..|...+.||..+...++.+||.+||||...+||-||++||+++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 99999999999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 002754 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (884)
Q Consensus 569 LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~ 648 (884)
|||||+||||||+.|.||+|+.+.|.+||+.|.++..+.+++|+..+|..++|+||+||.++|.+|...|.+..+..||+
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~ 382 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTM 382 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 002754 649 DDLLQAAQIEERG 661 (884)
Q Consensus 649 edi~~Al~~~~~g 661 (884)
+||..|++++...
T Consensus 383 ~DF~~Av~KV~~~ 395 (406)
T COG1222 383 EDFLKAVEKVVKK 395 (406)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998765
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-41 Score=381.17 Aligned_cols=249 Identities=42% Similarity=0.724 Sum_probs=233.6
Q ss_pred ccCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhh
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (884)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 488 (884)
-+.+++.|++++|+++.+.++++.+.+ +..+..|.++|+..|+||||+||||||||++||+||.+++.+|+.+.+.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 345789999999999999999998876 6788999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCC
Q 002754 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (884)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~ 568 (884)
++|+|.++..++.+|++++..+|||+|+||||++...|++ +++.-.+.++++||.+|||+....+|+||++||+|+.
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g---~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGG---SSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCC---CccchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 9999999999999999999999999999999999998862 3336677899999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC--CCcc
Q 002754 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG--RTEI 646 (884)
Q Consensus 569 LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~--~~~I 646 (884)
||++|+||||||+.|+||+|+.+.|++||+.++++.++.+++|+..||..|+||||+||..+|++|+..|.++. ...|
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i 662 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEI 662 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999874 4689
Q ss_pred CHHHHHHHHHHHHcC
Q 002754 647 TTDDLLQAAQIEERG 661 (884)
Q Consensus 647 t~edi~~Al~~~~~g 661 (884)
+.+||.+|+..+...
T Consensus 663 ~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 663 TWQHFEEALKAVRPS 677 (693)
T ss_pred cHHHHHHHHHhhccc
Confidence 999999999866443
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-40 Score=366.33 Aligned_cols=248 Identities=41% Similarity=0.676 Sum_probs=226.3
Q ss_pred cCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
..+++.|++++++.++..++..++.+ ++.+..|..+|+..|.||||+||||||||.|||++|++.+.+|+.|.+.++++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 34678899999999999999887765 78899999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L 569 (884)
+|+|..+..++++|+.++...|||||+||+|++.+.|+... ..-...++|+||.+|||+..+.+|.||++||+||.+
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 99999999999999999999999999999999998886543 334445999999999999999999999999999999
Q ss_pred CccCCCCCcccccccCCCCChhhHHHHHHHHHc--cCCCCCcccHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHhC---
Q 002754 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR--KKPMADDVDYLAVASMTD--GMVGAELANIVEVAAINMMRDG--- 642 (884)
Q Consensus 570 dpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~--~~~~~~didl~~lA~~t~--G~s~adL~~Lv~~A~~~A~~~~--- 642 (884)
||+++||||||+.+++++|+.++|..||+.+++ +.++.+++|++.||..+. ||||+||..||++|...|.++.
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 778899999999998877 9999999999999999887751
Q ss_pred ----------C---CccCHHHHHHHHHHHHcC
Q 002754 643 ----------R---TEITTDDLLQAAQIEERG 661 (884)
Q Consensus 643 ----------~---~~It~edi~~Al~~~~~g 661 (884)
+ ..+|..||.+|++++...
T Consensus 741 ~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 741 IDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred ccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 0 136778999999877543
No 11
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-37 Score=311.87 Aligned_cols=252 Identities=38% Similarity=0.656 Sum_probs=238.8
Q ss_pred ccCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhh
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (884)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 488 (884)
++.++-.++.+.|+++.+.++.+++.. .+++++|..+|+.-|.|+||+||||+|||.|++++|....+.|+++++++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 445667788899999999999999986 6789999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCC
Q 002754 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (884)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~ 568 (884)
..|+|.+...++.+|-.++.++|+|+|.||||+++..+...++.|+++...++-.||.++|+|....|+-||++||+.+.
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 99999999999999999999999999999999999988877767788888899999999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 002754 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (884)
Q Consensus 569 LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~ 648 (884)
+||+|+||||+|+.|.||+|+.+.|.+|++.|.++..+...+++..+|....|.||+++..+|.+|...|.++.+..+|.
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtq 378 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQ 378 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 002754 649 DDLLQAAQIEERG 661 (884)
Q Consensus 649 edi~~Al~~~~~g 661 (884)
+||+-|+..+..-
T Consensus 379 edfemav~kvm~k 391 (404)
T KOG0728|consen 379 EDFEMAVAKVMQK 391 (404)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
No 12
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=2.3e-36 Score=315.83 Aligned_cols=193 Identities=34% Similarity=0.452 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHHHcCCccc-cccchhhhHHHHHHHHHHHHHHHhCCCCCCcceeeecCCCCCcccceeeccccccccccc
Q 002754 647 TTDDLLQAAQIEERGMLDR-KERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGM 725 (884)
Q Consensus 647 t~edi~~Al~~~~~g~~~~-~~~~~~~~~~vA~hEaGhAvva~ll~~~~~v~~vsI~pr~g~~lG~~~~~~~e~~~~~~~ 725 (884)
|.+||.+|++++..|...+ ...+.++++++|+|||||||+++++++..+|.+|||+|+ |.++||+.+.|.+ +.+.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~pr-g~~~G~~~~~~~~---~~~~ 76 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPR-GSALGFTQFTPDE---DRYI 76 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTT-CCCCHCCEECHHT---T-SS
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecC-CCcceeEEeccch---hccc
Confidence 6789999999999995442 344899999999999999999999998899999999999 7799999998876 5567
Q ss_pred cCHHHHHHHHHHhhhhhhHHHHHcCCCcccccccchHHHHHHHHHHHHh-cCCCCCC----CCCCc--------------
Q 002754 726 LSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH----FGLSN-------------- 786 (884)
Q Consensus 726 ~Tr~~l~~~I~v~LaGRAAEel~fG~~~~stga~~Dl~~At~iA~~mV~-~Gms~~~----~g~~~-------------- 786 (884)
.||.+++++|+++|||||||+++||.+++|+|+++||.+||.+|+.||. |||++.. ++...
T Consensus 77 ~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~ 156 (213)
T PF01434_consen 77 RTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRR 156 (213)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEE
T ss_pred ccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccC
Confidence 9999999999999999999999999888999999999999999999999 9999843 11100
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 002754 787 FWVADRINEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHL 843 (884)
Q Consensus 787 ~~~~~~~~~id~ev~~lL~~ay~rA~~iL~~nr~~l~~la~~LleketL~~~ei~~i 843 (884)
.++..+...++.+|+++|+.+|++|++||++||+.|++||++|+++++|+++||.+|
T Consensus 157 ~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 157 PMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 234556788999999999999999999999999999999999999999999999986
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-36 Score=306.99 Aligned_cols=250 Identities=37% Similarity=0.628 Sum_probs=236.5
Q ss_pred cCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
..+.+.+.+++|++-.+.++++.+.. +.+..+|...|+.+|+|+|++||||||||+|+|++|+.....|+++.+++|+.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 45788999999999999999998885 56678999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L 569 (884)
+|+|.+...++.+|.-++.++|+|+||||+|++...+.....+.+.+...++-.||.+||+|....||-||++||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 99999999999999999999999999999999998887766677777888999999999999999999999999999999
Q ss_pred CccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 002754 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 570 dpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~e 649 (884)
||+|+||||+|+.|.||.|+..+++-+|.....+..+.+++|++.+..+-+..|++||..+|.+|...|.+.++-.|...
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~k 387 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQK 387 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 002754 650 DLLQAAQIEER 660 (884)
Q Consensus 650 di~~Al~~~~~ 660 (884)
||++|...+..
T Consensus 388 d~e~ay~~~vk 398 (408)
T KOG0727|consen 388 DFEKAYKTVVK 398 (408)
T ss_pred HHHHHHHhhcC
Confidence 99999886643
No 14
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-36 Score=336.43 Aligned_cols=226 Identities=42% Similarity=0.686 Sum_probs=212.4
Q ss_pred cccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhc
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 492 (884)
.++.|.+++|+++...++.+++..+.++..|..+|+.+|+||||+||||||||.||++||++++.||+.|+..+++..+.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCC----CceEEEeccCCCCC
Q 002754 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR----GNVITIASTNRPDI 568 (884)
Q Consensus 493 g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~----~~VlVIatTN~~~~ 568 (884)
|..+.+++.+|+++....|||+||||||++.+.|.. .+-+-.+.++.+||.+||++... ..|+||++||+||.
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 999999999999999999999999999999988643 23344567899999999997654 66999999999999
Q ss_pred CCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 002754 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (884)
Q Consensus 569 LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~ 641 (884)
|||+|+|+||||+.|.+..|+..+|.+||+..+++..+..++|+..||..|+||.|+||..||.+|+..|..+
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998875
No 15
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-36 Score=307.46 Aligned_cols=252 Identities=38% Similarity=0.634 Sum_probs=238.5
Q ss_pred ccCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhh
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (884)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 488 (884)
+..+.+.+.++.|+.+.+..+++++.. +-+++.|.++|+.+|.|+|++||||||||.+|+++|+..+..|+++-+++++
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 356788899999999999999999986 6688999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCC
Q 002754 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (884)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~ 568 (884)
..|+|.+...++.+|+.++....||+|+||||++++.+...+..|+.+...++..|+.++|+|..++|+-|+++||+|+.
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 99999999999999999999999999999999999888776667777777788899999999999999999999999999
Q ss_pred CCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 002754 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (884)
Q Consensus 569 LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~ 648 (884)
|||+|+||||+|+.+.|..|+.+.|..||+.|.+......++-++.+|+.++..+|++|+.+|.+|...|.+..+...|.
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~ate 408 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATE 408 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 002754 649 DDLLQAAQIEERG 661 (884)
Q Consensus 649 edi~~Al~~~~~g 661 (884)
.||..|+.++..|
T Consensus 409 kdfl~av~kvvkg 421 (435)
T KOG0729|consen 409 KDFLDAVNKVVKG 421 (435)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998877
No 16
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-34 Score=332.15 Aligned_cols=456 Identities=22% Similarity=0.287 Sum_probs=318.5
Q ss_pred ccchhhhcccccccceeecccCCccccccccceEEeecCcceeeeccCCcccc-hhhhhcccccccccccccccCCCCC-
Q 002754 124 IAYTEIFSLKDEGKLKHVIKSPSGSLRQKAEPVLVVLEDSRVLRTVLPSLDSN-RKFWESWDELKIDSLCVNAYTPPLK- 201 (884)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 201 (884)
...+|||+++++++|+|++|+|+|++|.++|++ .|..+-++..+ ..|.+..+.+.- ++.+
T Consensus 63 p~~~dly~vGt~a~I~q~~~lpdg~~kvlveg~---------~R~~I~~~~~~~~~~~a~~~~i~~---------~~~~~ 124 (782)
T COG0466 63 PTEDDLYEVGTLAKILQILKLPDGTVKVLVEGL---------QRVRISKLSDEEEFFEAEIELLPD---------EPIDE 124 (782)
T ss_pred CChhhhhhcchheeeeeeeeCCCCcEEEEEEee---------eeEEEEeeccCCCceEEEEEecCC---------Ccccc
Confidence 344599999999999999999999999999999 99999999987 466666555543 2333
Q ss_pred CCCCCC----------ccccccccCChhhhcccCCCchhhHHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHHHH
Q 002754 202 KPEVPN----------PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKE 271 (884)
Q Consensus 202 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~~l~~~~~~~~~l~~~~~~l~~e 271 (884)
..++.. .|+...+++|.+.+..+..++.|.+|+|++|+++.++...+|++.+.....++|+..+..+..|
T Consensus 125 ~~~~~al~~~i~~~~~~~~~l~~~~~~e~l~~~~~i~~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~Rlek~l~~l~~e 204 (782)
T COG0466 125 EREIEALVRSILSEFEEYAKLNKKIPPEELQSLNSIDDPGKLADTIAAHLPLKLEEKQEILETLDVKERLEKLLDLLEKE 204 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHhcccchHHHHHHHHHhCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 334343 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHH
Q 002754 272 EERRRKKEIRLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAERE 351 (884)
Q Consensus 272 ~~~~~~~~~rl~~l~~el~~~~~e~~~l~~~w~~Ek~~~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~ 351 (884)
.+.+..+++...++++++++.|++|.- .+|-..=++.+..-.+- +.+.+.|++.++. ...
T Consensus 205 i~~~~~ek~I~~kVk~~meK~QREyyL-~EQlKaIqkELG~~~d~---------~~e~~~~~~kie~----------~~~ 264 (782)
T COG0466 205 IDLLQLEKRIRKKVKEQMEKSQREYYL-REQLKAIQKELGEDDDD---------KDEVEELREKIEK----------LKL 264 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCccc---------hhHHHHHHHHHhh----------cCC
Confidence 999999988999999999999999983 32222211111111111 1112222222110 000
Q ss_pred HHHHHHHHHHHHHhccccchhHHhhhhhcChhHHHhhchhhhHHHHHH-----HhcCCCCcccccCc------ccccccc
Q 002754 352 ERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRR-----AYGKGLPQYLERGV------DVKFSDV 420 (884)
Q Consensus 352 ~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~a~vsr-----~t~ip~~~~~~~~~------~~~f~~~ 420 (884)
-.+-.+..++|+.+++ .+.++...+.+-| .+..||........ .+.-.++
T Consensus 265 p~evk~k~~~El~kL~-------------------~m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dH 325 (782)
T COG0466 265 PKEAKEKAEKELKKLE-------------------TMSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDH 325 (782)
T ss_pred CHHHHHHHHHHHHHHh-------------------cCCCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccc
Confidence 1111122223333222 1222333333333 34667766654432 2334678
Q ss_pred cCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhh---------h
Q 002754 421 AGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI---------Y 491 (884)
Q Consensus 421 ~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~---------~ 491 (884)
.|+++++..+-+..... .+...+...+ +||+||||+|||+|+++||..++..|++++.+...+. |
T Consensus 326 YGLekVKeRIlEyLAV~---~l~~~~kGpI---LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 326 YGLEKVKERILEYLAVQ---KLTKKLKGPI---LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred cCchhHHHHHHHHHHHH---HHhccCCCcE---EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccc
Confidence 99999996666544432 2222222222 8999999999999999999999999999999887543 9
Q ss_pred ccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcc-------------ccCCCceE
Q 002754 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-------------FEGRGNVI 558 (884)
Q Consensus 492 ~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~-------------~~~~~~Vl 558 (884)
+|..++++-+-+..+...+| +++|||||+++.+..+.+ -..||..+|. -.+-++|+
T Consensus 400 IGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP----------aSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 400 IGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP----------ASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh----------HHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 99999999888888988999 899999999987654332 2344444442 13447899
Q ss_pred EEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHcc-----CCCCC------cccHHHHHhh-C--CCCC-
Q 002754 559 TIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK-----KPMAD------DVDYLAVASM-T--DGMV- 623 (884)
Q Consensus 559 VIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~-----~~~~~------didl~~lA~~-t--~G~s- 623 (884)
||+|+|..+.+|.+|+. |+. +|.++.|+.++..+|.+.||-. .++.. +.-+..+.+. | .|.-
T Consensus 469 FiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~ 545 (782)
T COG0466 469 FIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRN 545 (782)
T ss_pred EEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhH
Confidence 99999999999999999 997 9999999999999999988732 23321 1112222222 1 2221
Q ss_pred -HHHHHHHHHHHHHHHHHhCCC---ccCHHHHHHHHH
Q 002754 624 -GAELANIVEVAAINMMRDGRT---EITTDDLLQAAQ 656 (884)
Q Consensus 624 -~adL~~Lv~~A~~~A~~~~~~---~It~edi~~Al~ 656 (884)
-+.|..+|+.++..-...... .|+..++..-+.
T Consensus 546 LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG 582 (782)
T COG0466 546 LEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLG 582 (782)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhC
Confidence 256667777776554443322 467777776654
No 17
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-35 Score=302.66 Aligned_cols=248 Identities=40% Similarity=0.661 Sum_probs=234.3
Q ss_pred CcccccccccCchhHHHHHHHHHH-hhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhh
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVK-FFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~-~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~ 490 (884)
.+.-.++++.|+++.+.++.+++. .+.+...|.++|+.+|+|+|+|||||||||.+|++.|...+..|..+.+..++.+
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 355568899999999988877655 4778889999999999999999999999999999999999999999999999999
Q ss_pred hccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCC
Q 002754 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (884)
Q Consensus 491 ~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~Ld 570 (884)
|+|.+...++..|.-++...|+||||||+|.++..|.....+|+.+...++-.||.++|+|.....|-||++||+.+.+|
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLD 324 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILD 324 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccC
Confidence 99999999999999999999999999999999999888777888888899999999999999999999999999999999
Q ss_pred ccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 002754 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 650 (884)
Q Consensus 571 paLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~ed 650 (884)
|+|+|+||+|+.|.||.|+.+.|.+|++.|.++..+.++++++.+|+.|++|+|++...+|-+|..+|.+++...|+.+|
T Consensus 325 PALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heD 404 (424)
T KOG0652|consen 325 PALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHED 404 (424)
T ss_pred HHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 002754 651 LLQAAQIEE 659 (884)
Q Consensus 651 i~~Al~~~~ 659 (884)
|.+++..+.
T Consensus 405 fmegI~eVq 413 (424)
T KOG0652|consen 405 FMEGILEVQ 413 (424)
T ss_pred HHHHHHHHH
Confidence 999987664
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=308.82 Aligned_cols=251 Identities=39% Similarity=0.663 Sum_probs=233.3
Q ss_pred ccCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhh
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (884)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 488 (884)
++.+.-.+.++.|++..+.++.+.+.. +.+++.|...|+++|.||+|||+||||||.|||++|+.....|+++.+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 355667899999999999999988875 6789999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCch-hHHHHHHHHHHhhccccCCCceEEEeccCCCC
Q 002754 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQ-ERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (884)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge-~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~ 567 (884)
..|.|.+...++++|+-+..++|+|+||||||+++..|... .|||+ +...++-.||.++|+|..++.|-||++||..+
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds-~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS-NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccC-CCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 99999999999999999999999999999999999877543 45554 44567779999999999999999999999999
Q ss_pred CCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 002754 568 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 647 (884)
Q Consensus 568 ~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It 647 (884)
.|||+|+||||+|+.|.||.|+...+..||..|.....+..+++++.+...-+.+||+||..+|.+|.+.|.+..+-.+|
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt 415 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVT 415 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 002754 648 TDDLLQAAQIEERG 661 (884)
Q Consensus 648 ~edi~~Al~~~~~g 661 (884)
.+||..|.+.+...
T Consensus 416 ~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 416 MEDFKKAKEKVLYK 429 (440)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
No 19
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.9e-34 Score=324.99 Aligned_cols=251 Identities=37% Similarity=0.593 Sum_probs=230.2
Q ss_pred cCcccccccccCchhHHHHHHHHHH-hhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVK-FFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~-~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
..+.+.|.+++|++..+.++++.+. .+.++..|..+|+..|+|++|+||||||||++++++|++++.+++.+.++.+..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 4678899999999999999999887 467888999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L 569 (884)
.|+|.+...++.+|..++...|+|+||||+|.++..+.....+.+......+..++..++++....+++||++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999888899999999999999999999999987664333333445567888999999998888899999999999999
Q ss_pred CccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 002754 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 570 dpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~e 649 (884)
||+++||||||+.|+|++|+.++|..||+.++.+..+..++++..++..++||||+||.++|++|...|.++++..|+.+
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~ 377 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPK 377 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 002754 650 DLLQAAQIEERG 661 (884)
Q Consensus 650 di~~Al~~~~~g 661 (884)
||..|+..+..+
T Consensus 378 df~~A~~~v~~~ 389 (398)
T PTZ00454 378 DFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
No 20
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-34 Score=328.27 Aligned_cols=247 Identities=38% Similarity=0.698 Sum_probs=220.2
Q ss_pred cCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
+-+++.|+|++|+++++.++.+-+.. +.++.++ ..|++...|||||||||||||.+|||+|.++...|+.+.+.++.+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLf-ssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELF-SSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhh-hccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 45789999999999999888876664 5556554 457888889999999999999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccC--CCceEEEeccCCCC
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNRPD 567 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~--~~~VlVIatTN~~~ 567 (884)
+|+|+.+.+++.+|+.|+...|||||+||+|++.+.|+-.++|||- .+.++.+||.+||++.+ ...|+||++||+||
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGV-MDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGV-MDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcccc-HHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 9999999999999999999999999999999999999887777764 45678999999999884 56799999999999
Q ss_pred CCCccCCCCCcccccccCCCCC-hhhHHHHHHHHHccCCCCCcccHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHh----
Q 002754 568 ILDPALVRPGRFDRKIFIPKPG-LIGRMEILKVHARKKPMADDVDYLAVASMTD-GMVGAELANIVEVAAINMMRD---- 641 (884)
Q Consensus 568 ~LdpaLlr~gRfd~~I~~~~P~-~eeR~~Il~~~l~~~~~~~didl~~lA~~t~-G~s~adL~~Lv~~A~~~A~~~---- 641 (884)
.|||+|+||||||..+++.+++ .+.+..|++...++..+..++|+..+|..++ .|||+|+..+|-.|.+.|.++
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874 5568899999999999999999999999885 699999999999999988875
Q ss_pred ---C----------CCccCHHHHHHHHHHHH
Q 002754 642 ---G----------RTEITTDDLLQAAQIEE 659 (884)
Q Consensus 642 ---~----------~~~It~edi~~Al~~~~ 659 (884)
+ .-.|+++||..++++..
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~~~l~ 933 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSAKRLQ 933 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHHHhcC
Confidence 1 12589999999988653
No 21
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=303.18 Aligned_cols=247 Identities=35% Similarity=0.551 Sum_probs=216.8
Q ss_pred cccCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchh
Q 002754 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (884)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~ 487 (884)
....+.+.|+++.|+.+.+.-+++++.. +-.|..|+. ..++-+|||++||||||||.|||++|.+++..|+.|+.+.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 3456789999999999999999887764 444554432 34455889999999999999999999999999999999999
Q ss_pred hhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCC-Cc---eEEEecc
Q 002754 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR-GN---VITIAST 563 (884)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~-~~---VlVIatT 563 (884)
.++|-|..++.++-+|+.++.++|++|||||||+++..|+.. +..+-.+.+-+.||.+|||.... .+ |+|+++|
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 999999999999999999999999999999999999888643 55677788999999999997653 33 8888999
Q ss_pred CCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q 002754 564 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR 643 (884)
Q Consensus 564 N~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~ 643 (884)
|.|+.||.+|+| ||...|+||+|+.+.|..+++..++.....+++++..|+..++||||+||.++|++|.+.+.++--
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999888411
Q ss_pred -----------------CccCHHHHHHHHHHHHc
Q 002754 644 -----------------TEITTDDLLQAAQIEER 660 (884)
Q Consensus 644 -----------------~~It~edi~~Al~~~~~ 660 (884)
..|+..||+.|+.++..
T Consensus 438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred hcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 24778888888876643
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.5e-33 Score=316.11 Aligned_cols=251 Identities=46% Similarity=0.737 Sum_probs=230.3
Q ss_pred cCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
..+.+.|+++.|+++.+.++.+.+.. +.++..+..+|+..|.|+||+||||||||++|+++|.+++.+++.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 44678889999999999999988765 66778899999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L 569 (884)
.|+|.....++.+|+.++...|+||||||+|.++..+.....++.......+..++..++++....+++||+|||.++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 99999888899999999999999999999999987765544455556667788899999988888899999999999999
Q ss_pred CccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 002754 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 570 dpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~e 649 (884)
|++++||||||+.|+|++|+.++|.+||+.++....+..++++..++..|.||+|+||..+|++|+..|.++++..|+.+
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~ 363 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTME 363 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHH
Confidence 99999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 002754 650 DLLQAAQIEERG 661 (884)
Q Consensus 650 di~~Al~~~~~g 661 (884)
||.+|+..+..+
T Consensus 364 d~~~A~~~~~~~ 375 (389)
T PRK03992 364 DFLKAIEKVMGK 375 (389)
T ss_pred HHHHHHHHHhcc
Confidence 999999988665
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=5.7e-33 Score=316.40 Aligned_cols=250 Identities=40% Similarity=0.664 Sum_probs=228.4
Q ss_pred cCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
..+...|.++.|++..+.++.+++.. +.++..+..+|+..|.|++|+||||||||++++++|++++.+++.+..+++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45668899999999999999998864 67788899999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L 569 (884)
.|.|.....++.+|..+....|+|+||||+|.++..+.....++.......+..++..++++....++.||++||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999888899999999999999999999999987765433344445566778899999998878899999999999999
Q ss_pred CccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 002754 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 570 dpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~e 649 (884)
|++++||||||+.|+|++|+.++|.+||+.++.+..+..++++..++..+.|++++||.++|++|+..|.++++..||.+
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~ 415 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQA 415 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHH
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 002754 650 DLLQAAQIEER 660 (884)
Q Consensus 650 di~~Al~~~~~ 660 (884)
||..|++++..
T Consensus 416 D~~~A~~~v~~ 426 (438)
T PTZ00361 416 DFRKAKEKVLY 426 (438)
T ss_pred HHHHHHHHHHh
Confidence 99999998854
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3.2e-33 Score=287.08 Aligned_cols=239 Identities=35% Similarity=0.589 Sum_probs=218.4
Q ss_pred cccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhc
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 492 (884)
.++.|+++.|....+..++-+..++.++..|. --.|++|||+||||||||++||+||+++..|++.+...++...|+
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg---~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFG---DWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhc---ccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 57889999999999999999999999997664 456788999999999999999999999999999999999999999
Q ss_pred cccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCcc
Q 002754 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 572 (884)
Q Consensus 493 g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~Ldpa 572 (884)
|.+...++.+|+.++..+|||+||||+|+++-+|....--| ....++|.||.+||++..+.+|+.|++||.|+.|||+
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~a 270 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPA 270 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHH
Confidence 99999999999999999999999999999977654321111 1234889999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHH-HHHHHHHHHHHHhCCCccCHHHH
Q 002754 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELA-NIVEVAAINMMRDGRTEITTDDL 651 (884)
Q Consensus 573 Llr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~-~Lv~~A~~~A~~~~~~~It~edi 651 (884)
+++ ||...|.|.+|+.++|..|++.+++..++.-+.++..++..|.||||+||. .++..|.+.|..+++..|+.+||
T Consensus 271 iRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edi 348 (368)
T COG1223 271 IRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDI 348 (368)
T ss_pred HHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHH
Confidence 998 999999999999999999999999999999999999999999999999996 67888999999999999999999
Q ss_pred HHHHHHH
Q 002754 652 LQAAQIE 658 (884)
Q Consensus 652 ~~Al~~~ 658 (884)
..|+...
T Consensus 349 e~al~k~ 355 (368)
T COG1223 349 EKALKKE 355 (368)
T ss_pred HHHHHhh
Confidence 9999874
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.5e-32 Score=308.31 Aligned_cols=226 Identities=36% Similarity=0.655 Sum_probs=210.6
Q ss_pred cccccccccCchhHHHHHHHHHHhh-cccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhh
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~-~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~ 491 (884)
..+.|.+++|+.+++.-+++++.+. +.+.+|....++.+.||||+||||||||.|+.++|..++..|+.+.+.++..+|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 4589999999999999999998874 467889999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCc
Q 002754 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (884)
Q Consensus 492 ~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~Ldp 571 (884)
+|..+.+++.+|..++...|||+|+||+|++.+.|+-.. . .-...++|+||.+|||...-.+|.|+++|.+|+.|||
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs--T-GVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS--T-GVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDP 818 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC--C-CchHHHHHHHHHhhccccccceEEEEEecCCccccCH
Confidence 999999999999999999999999999999999986532 2 2345589999999999999999999999999999999
Q ss_pred cCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 002754 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (884)
Q Consensus 572 aLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~ 641 (884)
+|+||||+|+.++.+.|+..+|.+|++..........++|+..+|..|+||||+||..++..|.+.|..+
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998887664
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=1.9e-31 Score=307.99 Aligned_cols=240 Identities=28% Similarity=0.414 Sum_probs=208.1
Q ss_pred cccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhc
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 492 (884)
....|++++|++..+..+......+. ......|+..|+|+||+||||||||++|++||++++.+++.++++.+...|+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~--~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFS--KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhh--HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 45678999999999988887655543 2345678999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCcc
Q 002754 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 572 (884)
Q Consensus 493 g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~Ldpa 572 (884)
|.....++.+|+.++...|||+||||||.+...+.... .+.....+++.|+..|+. ...+|+||+|||+++.+||+
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~--d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~a 376 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG--DSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLE 376 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC--CchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHH
Confidence 99999999999999999999999999999876433222 223455678888888884 45689999999999999999
Q ss_pred CCCCCcccccccCCCCChhhHHHHHHHHHccCCC--CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 002754 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM--ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 650 (884)
Q Consensus 573 Llr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~--~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~ed 650 (884)
++|+||||+.|+|+.|+.++|.+||+.++.+... ..+.++..++..|.||||+||+++|.+|...|..+++ .+|.+|
T Consensus 377 llR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~d 455 (489)
T CHL00195 377 ILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTDD 455 (489)
T ss_pred HhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHHH
Confidence 9999999999999999999999999999987643 2478899999999999999999999999999887765 699999
Q ss_pred HHHHHHHHH
Q 002754 651 LLQAAQIEE 659 (884)
Q Consensus 651 i~~Al~~~~ 659 (884)
+..|+..+.
T Consensus 456 l~~a~~~~~ 464 (489)
T CHL00195 456 ILLALKQFI 464 (489)
T ss_pred HHHHHHhcC
Confidence 999998664
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=3.8e-31 Score=298.58 Aligned_cols=248 Identities=48% Similarity=0.774 Sum_probs=225.4
Q ss_pred cCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
..+.+.|+++.|+++.+..+.+.+.. +.++..+..+|+..|.|++|+||||||||++++++|+.++.+++.+.++++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 45677889999999999999988764 56778888999999999999999999999999999999999999999998888
Q ss_pred hhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L 569 (884)
.|+|.....++.+|+.++...|+||||||+|.++..+.....+++......+..++..++++....++.||+|||.++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 89988888889999999999999999999999987665444455566677888999999988777899999999999999
Q ss_pred CccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 002754 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 570 dpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~e 649 (884)
|+++++|||||+.|+|+.|+.++|.+|++.++....+..++++..++..+.||+|+||..+|++|...|.++++..|+.+
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~ 354 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMD 354 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Confidence 99999999999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 002754 650 DLLQAAQIE 658 (884)
Q Consensus 650 di~~Al~~~ 658 (884)
||..|+..+
T Consensus 355 d~~~a~~~~ 363 (364)
T TIGR01242 355 DFIKAVEKV 363 (364)
T ss_pred HHHHHHHHh
Confidence 999999865
No 28
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=4.5e-31 Score=322.48 Aligned_cols=246 Identities=41% Similarity=0.755 Sum_probs=222.6
Q ss_pred CcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhh
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~ 490 (884)
.+.+.|.++.|++.++..+.+.+.. +..+..+..+|+..|.|+||+||||||||++++++|++++.+|+.++++++...
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 3567899999999999999988774 677788899999999999999999999999999999999999999999999999
Q ss_pred hccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCC
Q 002754 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (884)
Q Consensus 491 ~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~Ld 570 (884)
|+|..+..++.+|+.++...|||+||||+|.+++.++.. .++.....++++||..||++....+++||+|||.++.+|
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~--~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR--FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILD 604 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC--CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCC
Confidence 999999999999999999999999999999998776432 222345668899999999988888999999999999999
Q ss_pred ccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC--------
Q 002754 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-------- 642 (884)
Q Consensus 571 paLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~-------- 642 (884)
|+++||||||+.|+||+|+.++|.+||+.++++.++..++++..+|..|.||||+||..+|++|+..|.++.
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~ 684 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK 684 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 999999999999999999999999999999999998899999999999999999999999999999887741
Q ss_pred ----------CCccCHHHHHHHHHHHH
Q 002754 643 ----------RTEITTDDLLQAAQIEE 659 (884)
Q Consensus 643 ----------~~~It~edi~~Al~~~~ 659 (884)
...|+.+||..|+.++.
T Consensus 685 ~~~~~~~~~~~~~i~~~~f~~al~~~~ 711 (733)
T TIGR01243 685 LEVGEEEFLKDLKVEMRHFLEALKKVK 711 (733)
T ss_pred hhcccccccccCcccHHHHHHHHHHcC
Confidence 12699999999998654
No 29
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.1e-31 Score=309.83 Aligned_cols=245 Identities=44% Similarity=0.750 Sum_probs=223.4
Q ss_pred cCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
....+.|.++.|+...+..+.+++.. +..+..+...+...+.|+||+||||||||+||+++|.+++.+|+.+.++++..
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45678899999999999999998886 45667778889999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L 569 (884)
.|+|..+..++.+|..++...||||||||+|++...++....+ ....++++|+.+|++.....+|+||++||.|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~---~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG---SGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch---HHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 9999999999999999999999999999999998877543222 2256899999999999999999999999999999
Q ss_pred CccCCCCCcccccccCCCCChhhHHHHHHHHHccCC--CCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-CCcc
Q 002754 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP--MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-RTEI 646 (884)
Q Consensus 570 dpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~--~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~-~~~I 646 (884)
|++++||||||..|+|++|+..+|.+||+.++.+.. +..++++..++..|.||+|+||..+|++|...+.++. ...|
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999998544 4578999999999999999999999999999999988 7789
Q ss_pred CHHHHHHHHHHH
Q 002754 647 TTDDLLQAAQIE 658 (884)
Q Consensus 647 t~edi~~Al~~~ 658 (884)
|.+||..|+..+
T Consensus 472 ~~~~~~~a~~~~ 483 (494)
T COG0464 472 TLDDFLDALKKI 483 (494)
T ss_pred cHHHHHHHHHhc
Confidence 999999999873
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-31 Score=279.79 Aligned_cols=250 Identities=38% Similarity=0.660 Sum_probs=233.3
Q ss_pred cCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
...++.|+.+.|+....-++.+.+.. +.++.++.++|+++|.|++||||||+|||.+++++|..++..++.+..+++.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 45678899999999999888887764 77899999999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L 569 (884)
.|.|.....++..|..++.+.|||+|+||||+.++.+.....|.+.....++..|+.+|+++.....|-+|+|||+|+.|
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 99999999999999999999999999999999998885555578888889999999999999999999999999999999
Q ss_pred CccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 002754 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 570 dpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~e 649 (884)
||+|+||||+|+.+.+|.|+...|..|++.|.........++.+.+...++||.++|+++.|.+|...|.+..+..+-.+
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~E 364 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHE 364 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHH
Confidence 99999999999999999999999999999999888888889999999999999999999999999999999989899999
Q ss_pred HHHHHHHHHHc
Q 002754 650 DLLQAAQIEER 660 (884)
Q Consensus 650 di~~Al~~~~~ 660 (884)
|+..++..+..
T Consensus 365 d~~k~vrk~~~ 375 (388)
T KOG0651|consen 365 DFMKLVRKQAD 375 (388)
T ss_pred HHHHHHHHHHH
Confidence 99999877644
No 31
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-29 Score=265.35 Aligned_cols=227 Identities=34% Similarity=0.591 Sum_probs=197.5
Q ss_pred cccCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchh
Q 002754 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (884)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~ 487 (884)
....+++.|+++.|++..+..+.+++.. ++.+.+|.. +-.+-+||||+||||||||+|||++|.+.+..|+.++.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 3456899999999999999999887653 455555532 23344789999999999999999999999999999999999
Q ss_pred hhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc-CCCceEEEeccCCC
Q 002754 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNRP 566 (884)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~-~~~~VlVIatTN~~ 566 (884)
++.+.|..+..++.+|+.++.+.|+||||||||.+++.+.. ...+..|.+-..||.+|.+.. ++.+|+|+++||.|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999877643 334566778889999999864 45789999999999
Q ss_pred CCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 002754 567 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (884)
Q Consensus 567 ~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~ 641 (884)
+.||.+++| ||++.|+||+|+...|..+|+.|+.+.+.. .+-|+..|+..|+||||+||.-+|+.|.....+.
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999 999999999999999999999999887543 4578999999999999999999999998877765
No 32
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-29 Score=272.50 Aligned_cols=228 Identities=35% Similarity=0.614 Sum_probs=205.8
Q ss_pred cccCcccccccccCchhHHHHHHHHHHh-hccccccccccc-ccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecch
Q 002754 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGV-RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (884)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~-~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 486 (884)
...+..+.|.++.|++.++..+.+.+.. +..+..|...++ ..+.||||+||||||||.+|+++|.+.+..|+.++++.
T Consensus 83 ~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~ 162 (386)
T KOG0737|consen 83 PPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN 162 (386)
T ss_pred chhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc
Confidence 4456789999999999999999887764 566777755443 45678999999999999999999999999999999999
Q ss_pred hhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCc--eEEEeccC
Q 002754 487 FVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN--VITIASTN 564 (884)
Q Consensus 487 ~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~--VlVIatTN 564 (884)
+.+.++|...+.++.+|..+.+..|+|+||||+|.+++.|. .+..+-...+-++|+..-|++..+.+ |+|+++||
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 99999999999999999999999999999999999998873 45566777778899999999887665 99999999
Q ss_pred CCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 002754 565 RPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (884)
Q Consensus 565 ~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~ 641 (884)
+|..+|.+++| |+.++++|+.|+..+|..|++..++...+.+++|+..+|..|.||||.||.++|+.|+...+++
T Consensus 240 RP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 240 RPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999877764
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=1.8e-28 Score=283.02 Aligned_cols=266 Identities=35% Similarity=0.591 Sum_probs=210.8
Q ss_pred ccCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc----------
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN---------- 478 (884)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~---------- 478 (884)
...+.+.|+++.|++..+..+.+.+.. +.++..|...|+..|+|+||+||||||||++++++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 345678899999999999999887764 677888999999999999999999999999999999988543
Q ss_pred eeeeecchhhhhhccccchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCC
Q 002754 479 FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR 554 (884)
Q Consensus 479 ~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~ 554 (884)
|+.+..+++...|+|.....++.+|+.++.. .|+|+||||+|.+...++... .++..+.+++.||..||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccccC
Confidence 5566777788889999888899999988763 699999999999987764321 2233456789999999999888
Q ss_pred CceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccC-CCCC---------cccHHHHH--------
Q 002754 555 GNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-PMAD---------DVDYLAVA-------- 616 (884)
Q Consensus 555 ~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~-~~~~---------didl~~lA-------- 616 (884)
.+++||+|||+++.|||+++||||||.+|+|++|+.++|.+||+.++... ++.. ..++..++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999998642 3211 11111221
Q ss_pred ---------------------hhCCCCCHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHHcCCcccccc-ch
Q 002754 617 ---------------------SMTDGMVGAELANIVEVAAINMMRD----GRTEITTDDLLQAAQIEERGMLDRKER-SS 670 (884)
Q Consensus 617 ---------------------~~t~G~s~adL~~Lv~~A~~~A~~~----~~~~It~edi~~Al~~~~~g~~~~~~~-~~ 670 (884)
..++.+||++|.++|..|...|..+ +...|+.+|+..|+.........-++. .+
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~ 491 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTNP 491 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCCH
Confidence 2256688999999999998877765 445799999999998765542233333 56
Q ss_pred hhhHHHH
Q 002754 671 ETWRQVA 677 (884)
Q Consensus 671 ~~~~~vA 677 (884)
++|.++.
T Consensus 492 ~~w~~~~ 498 (512)
T TIGR03689 492 DDWARIS 498 (512)
T ss_pred HHHhhhh
Confidence 6675543
No 34
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.1e-29 Score=294.66 Aligned_cols=295 Identities=23% Similarity=0.254 Sum_probs=234.3
Q ss_pred CCCccccccccCChhhhcccCCCchhhHHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002754 205 VPNPYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQK 284 (884)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~~l~~~~~~~~~l~~~~~~l~~e~~~~~~~~~rl~~ 284 (884)
+++..|....++|++|++++..||+|.+|+|++||+..++.. .|..++.+++++.+++.|++.+.++.+
T Consensus 357 i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-------~p~~l~~~~~~~~~l~~e~~~~~~e~~---- 425 (786)
T COG0542 357 ITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-------KPEELDELERELAQLEIEKEALEREQD---- 425 (786)
T ss_pred ecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-------CCcchhHHHHHHHHHHHHHHHHhhhhh----
Confidence 344788899999999999999999999999999999988764 344444455555555555444444421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002754 285 YEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELE 364 (884)
Q Consensus 285 l~~el~~~~~e~~~l~~~w~~Ek~~~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~i~~Lekel~ 364 (884)
++|+..++.+..+ ....++.+++++.
T Consensus 426 -------------------~~~k~~~~~~~~~-----------------------------------~~~~~~~~~~~~~ 451 (786)
T COG0542 426 -------------------EKEKKLIDEIIKL-----------------------------------KEGRIPELEKELE 451 (786)
T ss_pred -------------------HHHHHHHHHHHHH-----------------------------------hhhhhhhHHHHHh
Confidence 2233323333322 1133444444443
Q ss_pred hccccchhHHhhhhhcChhHHHhhchhhhHHHHHHHhcCCCCcccccCcccccccccCchhHHHHHHHHHHhhccccccc
Q 002754 365 GLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYR 444 (884)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~ 444 (884)
. + ++.+.+++++++|||||+.++.+.+.....+....+.+.+.++++++..+.+.....
T Consensus 452 ~-~--------------------v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra 510 (786)
T COG0542 452 A-E--------------------VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA 510 (786)
T ss_pred h-c--------------------cCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH
Confidence 1 1 788899999999999999999999988888888889999999999999999999999
Q ss_pred ccccccCC----cEEEECCCCCCchhHHHHhhhhhc---cceeeeecchhhhh------------hccccchhhhhHHHH
Q 002754 445 RRGVRIPG----GILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEI------------YVGVGASRVRSLYQE 505 (884)
Q Consensus 445 ~~g~~i~~----giLL~GPpGtGKTtLakaLA~el~---~~~~~is~s~~~~~------------~~g~~~~~l~~lf~~ 505 (884)
+.|+..|. +++|.||+|+|||.|+|+||..+. ..+++++||++++. |+|+..+ +.+.+.
T Consensus 511 RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG--G~LTEa 588 (786)
T COG0542 511 RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG--GQLTEA 588 (786)
T ss_pred hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc--cchhHh
Confidence 99998874 399999999999999999999885 78999999999986 7777776 559999
Q ss_pred HHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc---------cCCCceEEEeccCCCC---------
Q 002754 506 AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD--------- 567 (884)
Q Consensus 506 a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~---------~~~~~VlVIatTN~~~--------- 567 (884)
+++.++|||++|||++.+++ +++.||+.||.- .+..|++||+|||...
T Consensus 589 VRr~PySViLlDEIEKAHpd--------------V~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~ 654 (786)
T COG0542 589 VRRKPYSVILLDEIEKAHPD--------------VFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADG 654 (786)
T ss_pred hhcCCCeEEEechhhhcCHH--------------HHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccc
Confidence 99999999999999999988 999999999962 2356899999998631
Q ss_pred -------------------CCCccCCCCCcccccccCCCCChhhHHHHHHHHHcc
Q 002754 568 -------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (884)
Q Consensus 568 -------------------~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~ 603 (884)
.+.|+|++ |+|.+|.|.+.+.+...+|+...+..
T Consensus 655 ~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 655 DDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred cccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 14578888 99999999999999999999887753
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.94 E-value=2.7e-26 Score=250.45 Aligned_cols=232 Identities=19% Similarity=0.204 Sum_probs=178.7
Q ss_pred ccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccchhhhhHHHHHHh-----cCCcEEEhhhH
Q 002754 445 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKD-----NAPSVVFIDEL 519 (884)
Q Consensus 445 ~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~-----~~p~Il~iDEI 519 (884)
..|+++|.+++|+||||||||.+++++|++++.+++.++.+++...|+|..+..++.+|..|+. ..|||||||||
T Consensus 142 ~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 142 LPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred ccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 3788999999999999999999999999999999999999999999999999999999999875 46999999999
Q ss_pred HHhhhhcCCCCCCCchhHHHHHHHHHHhhccc------------cCCCceEEEeccCCCCCCCccCCCCCcccccccCCC
Q 002754 520 DAVGRERGLIKGSGGQERDATLNQLLVCLDGF------------EGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 587 (884)
Q Consensus 520 d~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~------------~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~ 587 (884)
|++.+.++. ..+....+.+...||..+|+. ....+|+||+|||+|+.|||+|+||||||+.+ ..
T Consensus 222 DA~~g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~l 297 (413)
T PLN00020 222 DAGAGRFGT--TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WA 297 (413)
T ss_pred hhcCCCCCC--CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CC
Confidence 999887642 222223344557899888752 23567999999999999999999999999875 47
Q ss_pred CChhhHHHHHHHHHccCCCCCcccHHHHHhhCCC----CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCCc
Q 002754 588 PGLIGRMEILKVHARKKPMADDVDYLAVASMTDG----MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGML 663 (884)
Q Consensus 588 P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G----~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~g~~ 663 (884)
|+.++|.+|++.++++..+. ..++..|+..++| |.|+--..+..++...-..+ +..+.+-..+ ...-.
T Consensus 298 Pd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~----~g~~~~~~~l---~~~~~ 369 (413)
T PLN00020 298 PTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE----VGVENLGKKL---VNSKK 369 (413)
T ss_pred CCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH----hhHHHHHHHH---hcCCC
Confidence 99999999999999987765 5788889988877 56665566666665443332 2233332222 22211
Q ss_pred cccccchhhhHHHHHHHHHHHHHHH
Q 002754 664 DRKERSSETWRQVAINEAAMAVVAV 688 (884)
Q Consensus 664 ~~~~~~~~~~~~vA~hEaGhAvva~ 688 (884)
..+.........-.+-|+||.++..
T Consensus 370 ~~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 370 GPPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 1222344455566788899998764
No 36
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.94 E-value=2.9e-26 Score=282.44 Aligned_cols=362 Identities=19% Similarity=0.235 Sum_probs=264.2
Q ss_pred ccccccccCChhhhcccCCCchhhHHHHHHHHHHHHhHHhHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002754 208 PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEE-LEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYE 286 (884)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~~-l~~~~~~~~~l~~~~~~l~~e~~~~~~~~~rl~~l~ 286 (884)
..+.....++++|++.+..||++.+|+|++++...++...+++ |+.+.+.+..|+.+++.++.|.+..... |+++++
T Consensus 368 ~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~--~~~~l~ 445 (857)
T PRK10865 368 PAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKK--RLDMLN 445 (857)
T ss_pred HHHHHHHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHH
Confidence 4445556789999999999999999999999999998766664 6778888888888888887776555444 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002754 287 ESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGL 366 (884)
Q Consensus 287 ~el~~~~~e~~~l~~~w~~Ek~~~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~i~~Lekel~~~ 366 (884)
++++++++++..+.++|..++..+..+..+ +..++.+....+++++..+.....+.++..++++++++...
T Consensus 446 ~~l~~lq~e~~~L~eq~k~~k~el~~~~~~---------~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (857)
T PRK10865 446 EELSDKERQYSELEEEWKAEKASLSGTQTI---------KAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAA 516 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHH
Confidence 999999999999999999999988887777 77778888888877777777778888888888888877654
Q ss_pred cccchhHHhhhhhcChhHHHhhchhhhHHHHHHHhcCCCCcccccCcccccccccCchhHHHHHHHHHHhhccccccccc
Q 002754 367 EGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRR 446 (884)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~k~~v~~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~ 446 (884)
+... ..........++...+++++++|||||+.+....+..........+.+.+.++..++..+.........
T Consensus 517 ~~~~-------~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~ 589 (857)
T PRK10865 517 TQLE-------GKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRA 589 (857)
T ss_pred Hhhh-------ccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHh
Confidence 3111 111223445688899999999999999998877654433322222333333333333333322222333
Q ss_pred ccccC----CcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh-----hccccchh-----hhhHHHHHHhc
Q 002754 447 GVRIP----GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASR-----VRSLYQEAKDN 509 (884)
Q Consensus 447 g~~i~----~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~-----l~~lf~~a~~~ 509 (884)
|+..| +.++|+||+|||||++|++|+..+ +.+++.++++++... .+|...+. -..+.+..+..
T Consensus 590 gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~ 669 (857)
T PRK10865 590 GLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRR 669 (857)
T ss_pred cccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhC
Confidence 33333 248999999999999999999876 457899999887543 12221111 12345556666
Q ss_pred CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc---------cCCCceEEEeccCCC--------------
Q 002754 510 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRP-------------- 566 (884)
Q Consensus 510 ~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~---------~~~~~VlVIatTN~~-------------- 566 (884)
++++++|||++.+.+. +++.|++.++.. .+..+++||+|||..
T Consensus 670 p~~vLllDEieka~~~--------------v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~ 735 (857)
T PRK10865 670 PYSVILLDEVEKAHPD--------------VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYA 735 (857)
T ss_pred CCCeEEEeehhhCCHH--------------HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchH
Confidence 7799999999988765 778888877642 124567899999973
Q ss_pred -----------CCCCccCCCCCcccccccCCCCChhhHHHHHHHHHcc
Q 002754 567 -----------DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (884)
Q Consensus 567 -----------~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~ 603 (884)
..+.|+|++ |+|.++.|.+++.+....|++.++..
T Consensus 736 ~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 736 HMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred HHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 124578888 99999999999999999999877754
No 37
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.94 E-value=1.5e-25 Score=274.83 Aligned_cols=405 Identities=21% Similarity=0.291 Sum_probs=270.4
Q ss_pred hhhhcccccccceeecccCC---ccccccccceEEeecCcceeeeccCCcccchhhh-hcccccccccccccccCCCCCC
Q 002754 127 TEIFSLKDEGKLKHVIKSPS---GSLRQKAEPVLVVLEDSRVLRTVLPSLDSNRKFW-ESWDELKIDSLCVNAYTPPLKK 202 (884)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 202 (884)
.+|++++++++|.++.+.|+ |.+++.++|+ -|..+-++....-|| +.-+.+.- . .++.+.
T Consensus 56 ~~ly~VGt~a~I~~~~~~~d~~dG~~~Ilv~G~---------~R~rI~~~~~~~p~~~A~V~~l~~--~-----~~~~~~ 119 (775)
T TIGR00763 56 DDIYSVGVVAQILEMLPLPSSGTATYKVVVEGL---------RRIRIKELSDKGGYLVVRVDNLKE--E-----PFDKDD 119 (775)
T ss_pred ccccCCceEEEEEEeccCCCCCCCeEEEEEEEE---------EEEEEEEEecCCCcEEEEEEEecC--c-----CCCCCc
Confidence 57999999999999999555 9999999999 777777765554444 22222211 0 001111
Q ss_pred CCCCC----------ccccccc--cCChhhhcccCCCchhhHHHHHHHHHHHHh-HHhHHHHhhhhHHHHHHHHHHHHHH
Q 002754 203 PEVPN----------PYLGFLW--RVPASMLSTFRPKKESKRAAEIRRAREELK-RQRKEELEKMREESEMMEKAMDMQK 269 (884)
Q Consensus 203 ~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~-~~~k~~l~~~~~~~~~l~~~~~~l~ 269 (884)
.++.. .|+.... +++.+.+....+.+.|.+|+|.+|+.+.+. ...||+|.+.....++++.-+..|.
T Consensus 120 ~e~~al~~~l~~~~~el~~l~~l~~~~~e~~~~~~~~~dp~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~ 199 (775)
T TIGR00763 120 EEIKALTREIKETFRELISLSKLFREQPALLSALEDIDEPGRLADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLK 199 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccCCHHHHHHHhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22222 3444455 677777777888999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHH
Q 002754 270 KEEERRRKKEIRLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAE 349 (884)
Q Consensus 270 ~e~~~~~~~~~rl~~l~~el~~~~~e~~~l~~~w~~Ek~~~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~ 349 (884)
+|.+.+..+++...++++++++.|++|. |.++-..-++.+....+ ....++.|++.++. .
T Consensus 200 ~ele~l~l~~~I~~~v~~~~~~~qr~~~-Lreqlk~i~~eLg~~~~---------~~~~~~~~~~k~~~-------~--- 259 (775)
T TIGR00763 200 KELELLKLQNKITKKVEEKMEKTQREYY-LREQLKAIKKELGIEKD---------DKDELEKLKEKLEE-------L--- 259 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCC---------chhHHHHHHHHHHh-------c---
Confidence 9999999888899999999999999998 33333222221111000 01112222222221 0
Q ss_pred HHHHHHHHHHHHHHHhccccchhHHhhhhhcChhHHHhhchhhhHHHHHHHhcCCCCcccccCccc-----cc-ccccCc
Q 002754 350 REERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDV-----KF-SDVAGL 423 (884)
Q Consensus 350 e~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~a~vsr~t~ip~~~~~~~~~~~-----~f-~~~~gl 423 (884)
..-.+-.+.+.+++.+++.-.. .. ....-...-+..++++|+.+.......+ .| .++.|+
T Consensus 260 ~~~~~~~~~~~~e~~~~~~~~~--------~~------~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~ 325 (775)
T TIGR00763 260 KLPEEVKKVIEKELTKLSLLEP--------SS------SEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGL 325 (775)
T ss_pred CCCHHHHHHHHHHHHHHHcCCC--------CC------chHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCCh
Confidence 0112222334444443331100 00 0111234556778889987765442221 12 346688
Q ss_pred hhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhh---------hhhccc
Q 002754 424 GKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV---------EIYVGV 494 (884)
Q Consensus 424 ~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~---------~~~~g~ 494 (884)
.+++..+.+.+...... . +. ....++|+||||||||+++++||+.++.+++.++++... ..|+|.
T Consensus 326 ~~~k~~i~~~~~~~~~~---~--~~-~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~ 399 (775)
T TIGR00763 326 KKVKERILEYLAVQKLR---G--KM-KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGA 399 (775)
T ss_pred HHHHHHHHHHHHHHHhh---c--CC-CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCC
Confidence 88887766644432110 0 11 112599999999999999999999999999999876543 236777
Q ss_pred cchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcc-----cc--------CCCceEEEe
Q 002754 495 GASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-----FE--------GRGNVITIA 561 (884)
Q Consensus 495 ~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~-----~~--------~~~~VlVIa 561 (884)
..+.+...|..+...+| |++|||||++..... +. ..+.|+..||. +. +.++++||+
T Consensus 400 ~~g~i~~~l~~~~~~~~-villDEidk~~~~~~------~~----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 400 MPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR------GD----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred CCchHHHHHHHhCcCCC-EEEEechhhcCCccC------CC----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 77777777777766666 899999999975321 11 23455655552 11 236799999
Q ss_pred ccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHH
Q 002754 562 STNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 601 (884)
Q Consensus 562 tTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l 601 (884)
|||.++.++++|++ ||+ +|.|+.|+.+++..|++.++
T Consensus 469 TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 99999999999999 996 88999999999999998876
No 38
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.3e-26 Score=258.77 Aligned_cols=232 Identities=39% Similarity=0.625 Sum_probs=210.0
Q ss_pred ccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccc
Q 002754 418 SDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGA 496 (884)
Q Consensus 418 ~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~ 496 (884)
.++.|+......++.++.. +.++..+..+|..+|+|+|++||||+|||.+++++|++.+..++.+++.+++..+.|++.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte 263 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE 263 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence 5677787777777776664 667788899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHhcC-CcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCC
Q 002754 497 SRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVR 575 (884)
Q Consensus 497 ~~l~~lf~~a~~~~-p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr 575 (884)
..++..|+.+..+. |+++||||+|.+.+.+.... + ..+.+..+|+..||+.....+++||++||+|+.|||+++|
T Consensus 264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~---~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR 339 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD---D-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR 339 (693)
T ss_pred HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc---h-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc
Confidence 99999999999998 99999999999988764322 1 3456888999999998888999999999999999999999
Q ss_pred CCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 576 PGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 576 ~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
||||+.+.+..|+..+|.+|++.+.+..+..++.++..+|..+.||+|+||..+|++|...+.++ +.+++..|.
T Consensus 340 -gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A~ 413 (693)
T KOG0730|consen 340 -GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEAL 413 (693)
T ss_pred -CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHHH
Confidence 99999999999999999999999999999888899999999999999999999999999998887 788888887
Q ss_pred HHHH
Q 002754 656 QIEE 659 (884)
Q Consensus 656 ~~~~ 659 (884)
..+.
T Consensus 414 ~~i~ 417 (693)
T KOG0730|consen 414 MGIR 417 (693)
T ss_pred hcCC
Confidence 6553
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.3e-26 Score=253.80 Aligned_cols=273 Identities=31% Similarity=0.479 Sum_probs=214.9
Q ss_pred ccccccc--ccCchhHHHHHHHHHH--hhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhcc-ceeeeecchh
Q 002754 413 VDVKFSD--VAGLGKIRLELEEIVK--FFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-NFFSISASQF 487 (884)
Q Consensus 413 ~~~~f~~--~~gl~~~~~~l~~lv~--~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~-~~~~is~s~~ 487 (884)
+++.|.+ +.|+++....+-.-.. .+-.+....++|+.--+|+||+||||||||.+||.|..-++. +---+++.+.
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 5566665 4477765544322111 122456778899999999999999999999999999887743 2234789999
Q ss_pred hhhhccccchhhhhHHHHHHh--------cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEE
Q 002754 488 VEIYVGVGASRVRSLYQEAKD--------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 559 (884)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~a~~--------~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlV 559 (884)
.++|+|+++.+++.+|..+.. ..-.||++||||+++..|+..+++. .-...++|+||.-||+...-.|++|
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~T-GVhD~VVNQLLsKmDGVeqLNNILV 372 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGST-GVHDTVVNQLLSKMDGVEQLNNILV 372 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCC-CccHHHHHHHHHhcccHHhhhcEEE
Confidence 999999999999999988753 2235899999999999887655533 3446689999999999998999999
Q ss_pred EeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccC----CCCCcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 002754 560 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK----PMADDVDYLAVASMTDGMVGAELANIVEVAA 635 (884)
Q Consensus 560 IatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~----~~~~didl~~lA~~t~G~s~adL~~Lv~~A~ 635 (884)
|+-||+.|.||.+|+|||||..++++.+||...|++|++.|.... .+..++|+..+|.+|..|||++|+.+++.|.
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~ 452 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQ 452 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998654 5678999999999999999999999999998
Q ss_pred HHHHHhC---------------CCccCHHHHHHHHHHHHcCCccccccchhhh-------------HHHHHHHHHHHHHH
Q 002754 636 INMMRDG---------------RTEITTDDLLQAAQIEERGMLDRKERSSETW-------------RQVAINEAAMAVVA 687 (884)
Q Consensus 636 ~~A~~~~---------------~~~It~edi~~Al~~~~~g~~~~~~~~~~~~-------------~~vA~hEaGhAvva 687 (884)
-.|..+. .-.|+.+||..|++.+... -..++++. ....+.+-|.-+|+
T Consensus 453 S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA----FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~ 528 (744)
T KOG0741|consen 453 SFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA----FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQ 528 (744)
T ss_pred HHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc----cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHH
Confidence 7776541 1359999999999865332 11222222 23456678888887
Q ss_pred HhC
Q 002754 688 VNF 690 (884)
Q Consensus 688 ~ll 690 (884)
.+-
T Consensus 529 qvk 531 (744)
T KOG0741|consen 529 QVK 531 (744)
T ss_pred Hhh
Confidence 654
No 40
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.93 E-value=8.8e-25 Score=265.94 Aligned_cols=451 Identities=19% Similarity=0.267 Sum_probs=289.6
Q ss_pred hhhhcccccccceeecccCCccccccccceEEeecCcceeeeccCCcccchhhh-hcccccccccccccccCCCCCCCCC
Q 002754 127 TEIFSLKDEGKLKHVIKSPSGSLRQKAEPVLVVLEDSRVLRTVLPSLDSNRKFW-ESWDELKIDSLCVNAYTPPLKKPEV 205 (884)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (884)
.+||+++++++|.++.++|||++++.++|+ .|..+-++....-|| +.-+.+.- ++.+..+.
T Consensus 66 ~dLy~VGtla~I~~~~~l~DG~~~Ilv~Gl---------~RfrI~~~~~~~py~~A~Ve~l~~---------~~~~~~e~ 127 (784)
T PRK10787 66 NDLFTVGTVASILQMLKLPDGTVKVLVEGL---------QRARISALSDNGEHFSAKAEYLES---------PTIDEREQ 127 (784)
T ss_pred ccccCccEEEEEEEeeECCCCeEEEEEEEE---------EEEEEEEEEcCCCCEEEEEEEecC---------CCCCchHH
Confidence 579999999999999999999999999999 777776665554443 33222211 11111111
Q ss_pred CC----------ccccccccCChhhhcccCCCchhhHHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002754 206 PN----------PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERR 275 (884)
Q Consensus 206 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~~l~~~~~~~~~l~~~~~~l~~e~~~~ 275 (884)
.. .|+.....++++++..+.+++.|.+|+|.+|+.+.+...+||+|.+.....++++..+..|++|.+.+
T Consensus 128 ~al~~~ll~~~~~~~~l~~~~~~e~~~~~~~~ddp~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil 207 (784)
T PRK10787 128 EVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLL 207 (784)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHhhhhccccHHHHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 45556667788888888999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002754 276 RKKEIRLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKK 355 (884)
Q Consensus 276 ~~~~~rl~~l~~el~~~~~e~~~l~~~w~~Ek~~~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~ 355 (884)
+.+.+.-.++++++++.|++|.- .++-..=++ +||.. .-.....+.|+..++ +...-.+-
T Consensus 208 ~l~~~I~~~v~~~~~k~q~e~~l-req~~~i~~------elg~~---~~~~~~~~~~~~~~~----------~~~~~~~~ 267 (784)
T PRK10787 208 QVEKRIRNRVKKQMEKSQREYYL-NEQMKAIQK------ELGEM---DDAPDENEALKRKID----------AAKMPKEA 267 (784)
T ss_pred HHHHHHHHHHHHHHhhhhhhhcc-hhhhhhhcc------cccCC---CcchhHHHHHHHHHH----------hcCCCHHH
Confidence 98888899999999999999983 222221111 11000 000011111211111 00011122
Q ss_pred HHHHHHHHHhccccchhHHhhhhhcChhHHHhhchhhhHHH-----HHHHhcCCCCcccccCccc------ccccccCch
Q 002754 356 LRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGAR-----VRRAYGKGLPQYLERGVDV------KFSDVAGLG 424 (884)
Q Consensus 356 i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~a~-----vsr~t~ip~~~~~~~~~~~------~f~~~~gl~ 424 (884)
.+...+|+.+++. +........ +.....+||.........+ .-.++.|+.
T Consensus 268 ~~~~~~e~~~~~~-------------------~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~ 328 (784)
T PRK10787 268 KEKAEAELQKLKM-------------------MSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLE 328 (784)
T ss_pred HHHHHHHHHHHHh-------------------CCCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHH
Confidence 2234444443331 111222222 3334467777665543322 224478888
Q ss_pred hHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh---------hhcccc
Q 002754 425 KIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE---------IYVGVG 495 (884)
Q Consensus 425 ~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~---------~~~g~~ 495 (884)
+++..+.+........ .. .....++|+||||+|||++++.+|+.++.++++++++...+ .|.|..
T Consensus 329 ~vK~~i~~~l~~~~~~---~~---~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~ 402 (784)
T PRK10787 329 RVKDRILEYLAVQSRV---NK---IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSM 402 (784)
T ss_pred HHHHHHHHHHHHHHhc---cc---CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCC
Confidence 8887776554432211 10 01123899999999999999999999999999998876543 266666
Q ss_pred chhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcc-----c--------cCCCceEEEec
Q 002754 496 ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-----F--------EGRGNVITIAS 562 (884)
Q Consensus 496 ~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~-----~--------~~~~~VlVIat 562 (884)
.+.+.+.+..+...+| |++|||+|++..+... .....|+..+|. + .+.+++++|+|
T Consensus 403 ~G~~~~~l~~~~~~~~-villDEidk~~~~~~g----------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~T 471 (784)
T PRK10787 403 PGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG----------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVAT 471 (784)
T ss_pred CcHHHHHHHhcCCCCC-EEEEEChhhcccccCC----------CHHHHHHHHhccccEEEEecccccccccCCceEEEEc
Confidence 6665555555544555 8999999998754211 134566666663 1 13378999999
Q ss_pred cCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccC-----CCC-C--ccc---HHHHH-hhCCCCCHHHHHHH
Q 002754 563 TNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-----PMA-D--DVD---YLAVA-SMTDGMVGAELANI 630 (884)
Q Consensus 563 TN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~-----~~~-~--did---l~~lA-~~t~G~s~adL~~L 630 (884)
+|... |+|+|++ ||. +|.|+.|+.++..+|++.++... ... . .++ +..++ ..+..+-.+.|+.+
T Consensus 472 aN~~~-i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~ 547 (784)
T PRK10787 472 SNSMN-IPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLERE 547 (784)
T ss_pred CCCCC-CCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHH
Confidence 99984 9999999 996 89999999999999999888421 111 1 111 33333 23334445566555
Q ss_pred HHHHHHHHH----HhCC---CccCHHHHHHHH
Q 002754 631 VEVAAINMM----RDGR---TEITTDDLLQAA 655 (884)
Q Consensus 631 v~~A~~~A~----~~~~---~~It~edi~~Al 655 (884)
+...+..+. ..+. -.|+.+++...+
T Consensus 548 I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~l 579 (784)
T PRK10787 548 ISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 579 (784)
T ss_pred HHHHHHHHHHHHHhcCCCceeeecHHHHHHHh
Confidence 544433322 2222 357888877665
No 41
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=2.5e-25 Score=272.06 Aligned_cols=245 Identities=45% Similarity=0.772 Sum_probs=217.0
Q ss_pred cccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhh
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~ 491 (884)
..+.|+++.|+...+..+.+++.. +..+..+..+|+..|.|++|+||||||||+|+++||++++.+++.++++++...|
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 568899999999999999988775 5677888999999999999999999999999999999999999999999998889
Q ss_pred ccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCc
Q 002754 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (884)
Q Consensus 492 ~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~Ldp 571 (884)
.|.....++.+|+.+....|+|+||||+|.+...+.. ..++..+.+++.|+..|+++.....++||++||.++.+|+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~---~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREE---VTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccC---CcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 9888888999999999999999999999999876532 2234445678899999998888888999999999999999
Q ss_pred cCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC---------
Q 002754 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG--------- 642 (884)
Q Consensus 572 aLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~--------- 642 (884)
+++++|||++.|.++.|+.++|.+|++.+.+...+..+.++..++..+.||+++|+..+++.|+..+.++.
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~ 409 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFE 409 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999988888888999999999999999999999999988776541
Q ss_pred ----------CCccCHHHHHHHHHHHHc
Q 002754 643 ----------RTEITTDDLLQAAQIEER 660 (884)
Q Consensus 643 ----------~~~It~edi~~Al~~~~~ 660 (884)
...++.+|+..|+..+..
T Consensus 410 ~~~i~~~~~~~~~v~~~df~~Al~~v~p 437 (733)
T TIGR01243 410 AEEIPAEVLKELKVTMKDFMEALKMVEP 437 (733)
T ss_pred cccccchhcccccccHHHHHHHHhhccc
Confidence 124788999999886643
No 42
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.93 E-value=8.3e-25 Score=270.54 Aligned_cols=361 Identities=22% Similarity=0.272 Sum_probs=254.2
Q ss_pred ccccccccCChhhhcccCCCchhhHHHHHHHHHHHHhHHhH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002754 208 PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRK-EELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYE 286 (884)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k-~~l~~~~~~~~~l~~~~~~l~~e~~~~~~~~~rl~~l~ 286 (884)
..+..+-.++++|++.+..||+|.+|+|+++|+..++...+ ++++.+.+++..++.+..++.++.+..... |+++++
T Consensus 363 ~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 440 (852)
T TIGR03346 363 PAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKE--RLEDLE 440 (852)
T ss_pred HHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHH--HHHHHH
Confidence 45556678899999999999999999999999988765332 356666666666666666665544333333 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002754 287 ESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGL 366 (884)
Q Consensus 287 ~el~~~~~e~~~l~~~w~~Ek~~~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~i~~Lekel~~~ 366 (884)
+++++++.++..+...|..++..++.+..+ ...+.......++.++..+..++.+..+..++.+++.+..+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (852)
T TIGR03346 441 KELAELEEEYADLEEQWKAEKAAIQGIQQI---------KEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAA 511 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHH
Confidence 999999999999999999999988877776 55555555555555555555566666666677777766544
Q ss_pred cccchhHHhhhhhcChhHHHhhchhhhHHHHHHHhcCCCCcccccCcccccccccCchhHHHHHHHHHHhhccccccccc
Q 002754 367 EGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRR 446 (884)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~k~~v~~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~ 446 (884)
+.... ........+..++...++.++++|||+|+......+..........+.+.+.++..++..+.........
T Consensus 512 ~~~~~-----~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~ 586 (852)
T TIGR03346 512 EAKLG-----EETKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRA 586 (852)
T ss_pred HHHhh-----hccccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhc
Confidence 31110 0011234455688899999999999999988776655443322223344444444444444333333334
Q ss_pred cccc---C-CcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh------------hccccchhhhhHHHHHH
Q 002754 447 GVRI---P-GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLYQEAK 507 (884)
Q Consensus 447 g~~i---~-~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~------------~~g~~~~~l~~lf~~a~ 507 (884)
|+.. | ..++|+||+|||||++|++||..+ +.++++++++++... |+|.... +.+...++
T Consensus 587 gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~--g~l~~~v~ 664 (852)
T TIGR03346 587 GLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEG--GQLTEAVR 664 (852)
T ss_pred cCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccc--cHHHHHHH
Confidence 4433 2 348999999999999999999976 468899999886543 2222221 34666777
Q ss_pred hcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc---------cCCCceEEEeccCCCC-----------
Q 002754 508 DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD----------- 567 (884)
Q Consensus 508 ~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~---------~~~~~VlVIatTN~~~----------- 567 (884)
..+.+|++||||+++.+. +++.|++.|+.- .+..+++||+|||...
T Consensus 665 ~~p~~vlllDeieka~~~--------------v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~ 730 (852)
T TIGR03346 665 RKPYSVVLFDEVEKAHPD--------------VFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDD 730 (852)
T ss_pred cCCCcEEEEeccccCCHH--------------HHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhccccc
Confidence 788889999999998766 788888888642 1246789999999732
Q ss_pred --------------CCCccCCCCCcccccccCCCCChhhHHHHHHHHHc
Q 002754 568 --------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 602 (884)
Q Consensus 568 --------------~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~ 602 (884)
.+.|+|+. |||.++.|.+++.+...+|+...+.
T Consensus 731 ~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 731 YEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred HHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 14577877 9999999999999999999987664
No 43
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.93 E-value=1e-24 Score=268.13 Aligned_cols=351 Identities=19% Similarity=0.233 Sum_probs=242.3
Q ss_pred CCCccccccccCChhhhcccCCCchhhHHHHHHHHHHHHhHHhH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002754 205 VPNPYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRK-EELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQ 283 (884)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k-~~l~~~~~~~~~l~~~~~~l~~e~~~~~~~~~rl~ 283 (884)
+++..+..+-.++.+|+..++.||++.+|+|++||+..+++... .+++.+.+.+..++.++..+..+.........+..
T Consensus 374 i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (852)
T TIGR03345 374 ILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLA 453 (852)
T ss_pred eCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHH
Confidence 44566677788999999999999999999999999999875432 24555666666666666555443211111123677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002754 284 KYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLEREL 363 (884)
Q Consensus 284 ~l~~el~~~~~e~~~l~~~w~~Ek~~~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~i~~Lekel 363 (884)
+++++++++++++..+..+|+.|+.....+..+ . .+.. .............+..++.+++++
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 515 (852)
T TIGR03345 454 ELRAELAALEAELAALEARWQQEKELVEAILAL---------R-------AELE--ADADAPADDDAALRAQLAELEAAL 515 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H-------HHhh--hcccchhhhhHHHHHHHHHHHHHH
Confidence 888999999999999999999998755433322 0 0000 000000122223445555555555
Q ss_pred HhccccchhHHhhhhhcChhHHHhhchhhhHHHHHHHhcCCCCcccccCcccccccccCchhHHHHHHHHHHhhcccccc
Q 002754 364 EGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMY 443 (884)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~ 443 (884)
.... ..+......++...+++++++|||||+.+....+..........+.+.+.+++.++..+......
T Consensus 516 ~~~~-----------~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~ 584 (852)
T TIGR03345 516 ASAQ-----------GEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRT 584 (852)
T ss_pred HHHh-----------hccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHH
Confidence 4332 11223445588889999999999999998877666554444445666666666666665554444
Q ss_pred cccccccC---Cc-EEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh------------hccccchhhhhHHH
Q 002754 444 RRRGVRIP---GG-ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLYQ 504 (884)
Q Consensus 444 ~~~g~~i~---~g-iLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~------------~~g~~~~~l~~lf~ 504 (884)
.+.|+..| .| ++|+||+|||||.+|++||..+ ...++.++++++.+. |+|...+ +.+.+
T Consensus 585 ~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~ 662 (852)
T TIGR03345 585 ARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTE 662 (852)
T ss_pred HhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc--chHHH
Confidence 44555433 34 8999999999999999999988 457899999987643 4444333 33667
Q ss_pred HHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc---------CCCceEEEeccCCCC--------
Q 002754 505 EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD-------- 567 (884)
Q Consensus 505 ~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~---------~~~~VlVIatTN~~~-------- 567 (884)
.++..+++||+||||+++++. +++.|++.+|... +..+++||+|||...
T Consensus 663 ~v~~~p~svvllDEieka~~~--------------v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~ 728 (852)
T TIGR03345 663 AVRRKPYSVVLLDEVEKAHPD--------------VLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCA 728 (852)
T ss_pred HHHhCCCcEEEEechhhcCHH--------------HHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhcc
Confidence 788889999999999998765 7788888887532 236799999998521
Q ss_pred ---------------------CCCccCCCCCcccccccCCCCChhhHHHHHHHHHcc
Q 002754 568 ---------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (884)
Q Consensus 568 ---------------------~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~ 603 (884)
.+.|+|++ |++ +|.|.+++.++...|+...+..
T Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 729 DPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred CcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 15678888 997 8999999999999999877644
No 44
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5e-25 Score=264.76 Aligned_cols=248 Identities=33% Similarity=0.576 Sum_probs=209.1
Q ss_pred ccCcccccccccCchhHHHHHHHHHHh-hcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh-----ccceeeee
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSIS 483 (884)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is 483 (884)
.....+.|++++|++.++..+++.+.. +-.++.|..+++..|+|+||+||||||||..|++||..+ ...|+.-+
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 345678899999999999999998875 677899999999999999999999999999999999987 34455556
Q ss_pred cchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEecc
Q 002754 484 ASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 563 (884)
Q Consensus 484 ~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatT 563 (884)
+++....|+|..+..++.+|+.++.+.|+|+|+||||.+++-+.. -..+....+...||..|||+..++.|+||++|
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs---kqEqih~SIvSTLLaLmdGldsRgqVvvigAT 413 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS---KQEQIHASIVSTLLALMDGLDSRGQVVVIGAT 413 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc---hHHHhhhhHHHHHHHhccCCCCCCceEEEccc
Confidence 677778899999999999999999999999999999988776521 11223345788999999999999999999999
Q ss_pred CCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCC-CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Q 002754 564 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG 642 (884)
Q Consensus 564 N~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~-~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~ 642 (884)
|+++.+||+++||||||+.++|+.|+.+.|..|+..|.++-.- ....-+..+|..+.||.|+||+.+|.+|+..+.++.
T Consensus 414 nRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 414 NRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 9999999999999999999999999999999999999876432 123346789999999999999999999999998763
Q ss_pred C----------------CccCHHHHHHHHHHHHc
Q 002754 643 R----------------TEITTDDLLQAAQIEER 660 (884)
Q Consensus 643 ~----------------~~It~edi~~Al~~~~~ 660 (884)
- ..|...||..|+.++..
T Consensus 494 ~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~p 527 (1080)
T KOG0732|consen 494 FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITP 527 (1080)
T ss_pred cCeeecccccccccchhhhhhhHhhhhhhhccCC
Confidence 2 23566666666665543
No 45
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.8e-24 Score=236.71 Aligned_cols=245 Identities=33% Similarity=0.523 Sum_probs=203.2
Q ss_pred ccCcccccccccCchhHHHHHHHHHHhh-ccccccccccccc-CCcEEEECCCCCCchhHHHHhhhhhccceeeeecchh
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRRGVRI-PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (884)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~-~~~~~~~~~g~~i-~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~ 487 (884)
....++.|++++|+...+..+.+++.+. ..+..|. |++. ++|+||.||||+|||.|+++||.+.+..|+.++.+.+
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~--glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFL--GLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhh--ccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 3456788999999999998888877764 3355553 3333 3679999999999999999999999999999999999
Q ss_pred hhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccC--CCceEEEeccCC
Q 002754 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNR 565 (884)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~--~~~VlVIatTN~ 565 (884)
...|+|..+..++.+|.-++...|+|+||||+|.++..+. +...+..+.....+|..+++... .++|+||+|||.
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs---~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS---DNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC---CcccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 9999999999999999999999999999999999998873 34455555677777777776543 457999999999
Q ss_pred CCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccC-CCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC--
Q 002754 566 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-PMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-- 642 (884)
Q Consensus 566 ~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~-~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~-- 642 (884)
|+.+|.+++| ||..+++||.|+.+.|..+|+..+.+. ....+.++..++..|+||++.||.++|.+|+.--.+..
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 999999999999999999999999877 33355789999999999999999999999975433322
Q ss_pred -----------CCccCHHHHHHHHHHHHcC
Q 002754 643 -----------RTEITTDDLLQAAQIEERG 661 (884)
Q Consensus 643 -----------~~~It~edi~~Al~~~~~g 661 (884)
...|+..|+..++..+...
T Consensus 378 ~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 378 TTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred chhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 2357777777777766443
No 46
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.86 E-value=3.8e-21 Score=237.49 Aligned_cols=303 Identities=17% Similarity=0.195 Sum_probs=213.8
Q ss_pred CCCccccccccCChhhhcccCCCchhhHHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhHH--HHH
Q 002754 205 VPNPYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKE--IRL 282 (884)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~~l~~~~~~~~~l~~~~~~l~~e~~~~~~~~--~rl 282 (884)
++...+..+..++.+|+..+..||++.+|+|.++|+..+.. ...|..+..+++++..++.|++.+.++. .+.
T Consensus 365 i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (821)
T CHL00095 365 ISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLIN------SRLPPAARELDKELREILKDKDEAIREQDFETA 438 (821)
T ss_pred CCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhc------cCCchhHHHHHHHHHHHHHHHHHHHhCcchHHH
Confidence 44456777788899999999999999999999999988765 3456666667777766666665554331 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002754 283 QKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERE 362 (884)
Q Consensus 283 ~~l~~el~~~~~e~~~l~~~w~~Ek~~~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~i~~Leke 362 (884)
.+++.+..++++++..+...|..++.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 464 (821)
T CHL00095 439 KQLRDREMEVRAQIAAIIQSKKTEEE------------------------------------------------------ 464 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc------------------------------------------------------
Confidence 33333333444444444433433211
Q ss_pred HHhccccchhHHhhhhhcChhHHHhhchhhhHHHHHHHhcCCCCcccccCcccccccccCchhHHHHHHHHHHhhccccc
Q 002754 363 LEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEM 442 (884)
Q Consensus 363 l~~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~ 442 (884)
.......++...+++++++|||+|+......+..........+.+.+.++++++..+.....
T Consensus 465 ------------------~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~ 526 (821)
T CHL00095 465 ------------------KRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIR 526 (821)
T ss_pred ------------------ccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHH
Confidence 00011347888999999999999999888776665555555566666777777666655544
Q ss_pred ccccccccC---C-cEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh------------hccccchhhhhHH
Q 002754 443 YRRRGVRIP---G-GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLY 503 (884)
Q Consensus 443 ~~~~g~~i~---~-giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~------------~~g~~~~~l~~lf 503 (884)
..+.|+..| . .++|+||+|||||+||++||..+ +.++++++++++.+. |+|.... +.+.
T Consensus 527 ~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~--~~l~ 604 (821)
T CHL00095 527 RARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEG--GQLT 604 (821)
T ss_pred HHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCcc--chHH
Confidence 455555443 2 38999999999999999999977 467899999887542 3333222 3577
Q ss_pred HHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc---------cCCCceEEEeccCCCCC------
Q 002754 504 QEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPDI------ 568 (884)
Q Consensus 504 ~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~---------~~~~~VlVIatTN~~~~------ 568 (884)
+.++..+++|++|||+|++.+. +++.|++.|+.. .+..+++||+|||....
T Consensus 605 ~~~~~~p~~VvllDeieka~~~--------------v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~ 670 (821)
T CHL00095 605 EAVRKKPYTVVLFDEIEKAHPD--------------IFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNS 670 (821)
T ss_pred HHHHhCCCeEEEECChhhCCHH--------------HHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhc
Confidence 7888888899999999998766 788888888852 12467999999985321
Q ss_pred -------------------------------CCccCCCCCcccccccCCCCChhhHHHHHHHHHcc
Q 002754 569 -------------------------------LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (884)
Q Consensus 569 -------------------------------LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~ 603 (884)
+.|+|++ |+|.+|.|.+.+.++...|+...+.+
T Consensus 671 ~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 671 GGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred cccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 2356777 99999999999999999999877753
No 47
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-20 Score=216.10 Aligned_cols=325 Identities=20% Similarity=0.282 Sum_probs=217.6
Q ss_pred cCCCchhhHHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002754 224 FRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYEESLQDARDNYRYMANVW 303 (884)
Q Consensus 224 ~~~~~~~~~l~d~~~~~~~~~~~~k~~l~~~~~~~~~l~~~~~~l~~e~~~~~~~~~rl~~l~~el~~~~~e~~~l~~~w 303 (884)
...-+++.+|+|+.||...+...+.+++.+--..-.+|+.-+.-+++|.+..+.+.+.-+++++++..-+++|- |.+|-
T Consensus 244 ~~~~~~~~~LaD~~aai~~~~~~elq~vL~~~di~~Rl~~al~llkke~e~~klq~ki~k~vE~k~~~~~r~yl-L~eQl 322 (906)
T KOG2004|consen 244 LIVEDNPIKLADFGAAISGAEFHELQEVLEETDIEKRLEKALELLKKELELAKLQQKIGKEVEEKIKQDHREYL-LREQL 322 (906)
T ss_pred HhcccChhHHHHHHHHHhccCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHH-HHHHH
Confidence 44578999999999999999999999999998999999999999999999888887777888888888777776 22222
Q ss_pred HHhhhhhhhhhccccceeeeecccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcCh
Q 002754 304 ENLAKDSTVATGLGIVFFVIFYRTV-VLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNP 382 (884)
Q Consensus 304 ~~Ek~~~~~~~~l~~~~~l~~ykGn-y~~y~~~le~~e~~~~~era~e~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~ 382 (884)
..=|..+..-.+- +.+ .+.|++.+. . ...-..-.+...+|+.++..-..
T Consensus 323 k~IKkeLg~e~Dd---------kd~~~~~~~er~~-------~---~~~P~~v~kv~~eEl~kL~~le~----------- 372 (906)
T KOG2004|consen 323 KAIKKELGIEKDD---------KDALVEKFRERIK-------S---LKMPDHVLKVIDEELTKLKLLEP----------- 372 (906)
T ss_pred HHHHHhhCCCccc---------hhhHHHHHHHHhh-------h---ccCcHHHHHHHHHHHHHHhccCc-----------
Confidence 2111111000000 000 000110000 0 00011122223333332220000
Q ss_pred hHHHhhchhhhHHHHHHHhcCCCCcccccCc------ccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEE
Q 002754 383 HLKMAMQFMKSGARVRRAYGKGLPQYLERGV------DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILL 456 (884)
Q Consensus 383 ~~k~~v~~~~~~a~vsr~t~ip~~~~~~~~~------~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL 456 (884)
....+.-...-+...+.+||.+...+.. .+.-+++.|+.+++.++-+.+.. ..+.......+ +||
T Consensus 373 ---~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV---~kLrgs~qGkI---lCf 443 (906)
T KOG2004|consen 373 ---SSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAV---GKLRGSVQGKI---LCF 443 (906)
T ss_pred ---cccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHH---HhhcccCCCcE---EEE
Confidence 0001111223344556778777665432 23346788999999777665542 22222222222 899
Q ss_pred ECCCCCCchhHHHHhhhhhccceeeeecchhhhh---------hccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcC
Q 002754 457 CGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI---------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (884)
Q Consensus 457 ~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~---------~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~ 527 (884)
+||||+|||+++|+||..++..|++++.+.+.+. |+|.+++++-+.+..+...+| +++|||||+++....
T Consensus 444 ~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~q 522 (906)
T KOG2004|consen 444 VGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQ 522 (906)
T ss_pred eCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCC
Confidence 9999999999999999999999999998877554 999999999899999999999 899999999984322
Q ss_pred CCCCCCchhHHHHHHHHHHhhcc-------------ccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHH
Q 002754 528 LIKGSGGQERDATLNQLLVCLDG-------------FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM 594 (884)
Q Consensus 528 ~~~~Sgge~~~~~l~~LL~~ld~-------------~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~ 594 (884)
+. --..||..||. -.+-+.|+||||.|..+.||++|+. |+. +|.++.|..++..
T Consensus 523 GD----------PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv 589 (906)
T KOG2004|consen 523 GD----------PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKV 589 (906)
T ss_pred CC----------hHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHH
Confidence 11 12344444442 1234679999999999999999999 987 9999999999999
Q ss_pred HHHHHHHc
Q 002754 595 EILKVHAR 602 (884)
Q Consensus 595 ~Il~~~l~ 602 (884)
.|.+.||-
T Consensus 590 ~IA~~yLi 597 (906)
T KOG2004|consen 590 KIAERYLI 597 (906)
T ss_pred HHHHHhhh
Confidence 99998884
No 48
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.4e-17 Score=180.75 Aligned_cols=177 Identities=28% Similarity=0.450 Sum_probs=138.4
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccchhhhhHHHHHHhcCC-cEEEhhhHHHhhhhcCCCC
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAP-SVVFIDELDAVGRERGLIK 530 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p-~Il~iDEId~l~~~r~~~~ 530 (884)
++|+||||||||||.+++-||...|.++-.+.+++..- .-.+....+..+|+.+..... -++||||.|.|+..+....
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkty 463 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY 463 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhh
Confidence 56999999999999999999999999988888776432 222344567889999987554 4689999999998876543
Q ss_pred CCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC---
Q 002754 531 GSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA--- 607 (884)
Q Consensus 531 ~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~--- 607 (884)
. .+-.+..+|.||-.-- .....++++.+||.|..+|.++-. |||.+|+||+|..++|..++..|+.+.-..
T Consensus 464 m--SEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~ 537 (630)
T KOG0742|consen 464 M--SEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPAT 537 (630)
T ss_pred h--cHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCC
Confidence 3 3556779999884332 334568888999999999999988 999999999999999999999888543100
Q ss_pred --------------------Cc----ccHHHHHhhCCCCCHHHHHHHHHHHH
Q 002754 608 --------------------DD----VDYLAVASMTDGMVGAELANIVEVAA 635 (884)
Q Consensus 608 --------------------~d----idl~~lA~~t~G~s~adL~~Lv~~A~ 635 (884)
.. -.+...|..|.||||++|..|+--..
T Consensus 538 ~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQ 589 (630)
T KOG0742|consen 538 SGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQ 589 (630)
T ss_pred CCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 01 12466789999999999999876443
No 49
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.7e-19 Score=214.93 Aligned_cols=310 Identities=19% Similarity=0.137 Sum_probs=236.7
Q ss_pred ccccccccCChhhhcccCCCchhhHHHHHHHHHHHHhHHhHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002754 208 PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKE-ELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYE 286 (884)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~-~l~~~~~~~~~l~~~~~~l~~e~~~~~~~~~rl~~l~ 286 (884)
..+..+..++++|++..-.+|.+.++.|+++|....+...+. +|+...+....++.++..|+++.+....+ |+. .
T Consensus 377 ~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~--r~~--~ 452 (898)
T KOG1051|consen 377 ESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHK--RPS--L 452 (898)
T ss_pred cccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhcc--ccc--c
Confidence 556677888899999999999999999999999998654433 36666666666666777777766644444 555 6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002754 287 ESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGL 366 (884)
Q Consensus 287 ~el~~~~~e~~~l~~~w~~Ek~~~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~i~~Lekel~~~ 366 (884)
+.+......+..++..|..++...+.+... +...+.-.- ++..++..+...+....+..++ .+...
T Consensus 453 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~---------~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p-~~~~~--- 518 (898)
T KOG1051|consen 453 ESLAPSKPTQQPLSASVDSERSVIEELKLK---------KNSLDRNSL-LAKAHRPNDYTRETDLRYGRIP-DELSE--- 518 (898)
T ss_pred ccccccccccccchhhhccchhHHhhhccc---------cCCcccchh-hhcccCCCCcchhhhccccccc-hhhhh---
Confidence 777788888889999999999988887765 444444443 4445666666666666666666 11100
Q ss_pred cccchhHHhhhhhcChhHHHhhchhhhHHHHHHHhcCCCCcccccCcccccccccCchhHHHHHHHHHHhhccccccccc
Q 002754 367 EGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRR 446 (884)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~k~~v~~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~ 446 (884)
....+. .....+..++++|+|+|+......+....+.....+++.+.++++++..+.......+.
T Consensus 519 ----------~~~~~~-----~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~ 583 (898)
T KOG1051|consen 519 ----------KSNDNQ-----GGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRA 583 (898)
T ss_pred ----------hccccc-----CCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc
Confidence 000111 16678899999999999999888877777788888999999999999999888888888
Q ss_pred ccccC--Cc-EEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh---------hccccchhhhhHHHHHHhcCC
Q 002754 447 GVRIP--GG-ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI---------YVGVGASRVRSLYQEAKDNAP 511 (884)
Q Consensus 447 g~~i~--~g-iLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~---------~~g~~~~~l~~lf~~a~~~~p 511 (884)
|+.-| .. ++|.||.|+|||-||++||..+ ...+++++++++++. |+|.... .++++.+++.++
T Consensus 584 gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~g--g~LteavrrrP~ 661 (898)
T KOG1051|consen 584 GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEG--GQLTEAVKRRPY 661 (898)
T ss_pred ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhH--HHHHHHHhcCCc
Confidence 88775 22 9999999999999999999976 568999999986653 4554443 579999999999
Q ss_pred cEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc---------CCCceEEEeccCCC
Q 002754 512 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP 566 (884)
Q Consensus 512 ~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~---------~~~~VlVIatTN~~ 566 (884)
+||+|||||+.+.. +++.|++.+|... +..|+|||+|+|..
T Consensus 662 sVVLfdeIEkAh~~--------------v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 662 SVVLFEEIEKAHPD--------------VLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVG 711 (898)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHHhcCccccCCCcEeeccceEEEEecccc
Confidence 99999999999877 8898888888632 24689999999874
No 50
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.74 E-value=3e-18 Score=163.98 Aligned_cols=130 Identities=45% Similarity=0.718 Sum_probs=114.2
Q ss_pred EEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccchhhhhHHHHHHhcC-CcEEEhhhHHHhhhhcCCCCCC
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGS 532 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~-p~Il~iDEId~l~~~r~~~~~S 532 (884)
++|+||||||||++++.+|..++.+++.++++.+...+.+.....+..+|+.+.... |+|++|||+|.+.... ..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 689999999999999999999999999999999987788888888999999998887 9999999999998775 234
Q ss_pred CchhHHHHHHHHHHhhccccCC-CceEEEeccCCCCCCCccCCCCCcccccccCCC
Q 002754 533 GGQERDATLNQLLVCLDGFEGR-GNVITIASTNRPDILDPALVRPGRFDRKIFIPK 587 (884)
Q Consensus 533 gge~~~~~l~~LL~~ld~~~~~-~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~ 587 (884)
........++.|+..++..... .+++||++||.++.+++++++ +||+..|++|.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 5566667888999999976654 569999999999999999997 89999999873
No 51
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.1e-17 Score=186.12 Aligned_cols=205 Identities=23% Similarity=0.354 Sum_probs=150.9
Q ss_pred ccccccCchhHHHH-HHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccc
Q 002754 416 KFSDVAGLGKIRLE-LEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGV 494 (884)
Q Consensus 416 ~f~~~~gl~~~~~~-l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~ 494 (884)
.|+.++--.+.+.+ ++++..+.....-|++.|....+|.||+||||||||+++-|+|+.++..++-++.++...
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~----- 273 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL----- 273 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----
Confidence 44444432333333 356777777888899999999999999999999999999999999999998888776322
Q ss_pred cchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcC--CCCCCCc--hhHHHHHHHHHHhhccccCCC--ceEEEeccCCCCC
Q 002754 495 GASRVRSLYQEAKDNAPSVVFIDELDAVGRERG--LIKGSGG--QERDATLNQLLVCLDGFEGRG--NVITIASTNRPDI 568 (884)
Q Consensus 495 ~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~--~~~~Sgg--e~~~~~l~~LL~~ld~~~~~~--~VlVIatTN~~~~ 568 (884)
... ++.++-.. .+-+||+|++||....-+. .....+. .....++..||..+||+.... .-|||.|||+.+.
T Consensus 274 n~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~Ek 350 (457)
T KOG0743|consen 274 DSD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEK 350 (457)
T ss_pred cHH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhh
Confidence 222 55555443 3457999999998744221 1111111 235578999999999987765 5789999999999
Q ss_pred CCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCC--CCHHHHHHH
Q 002754 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDG--MVGAELANI 630 (884)
Q Consensus 569 LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G--~s~adL~~L 630 (884)
|||||+||||+|.+|+++..+.++-..+++.++.-.. +..-+..+.....+ .||||+...
T Consensus 351 LDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 351 LDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred cCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 9999999999999999999999999999999986432 22234444444443 589988543
No 52
>CHL00181 cbbX CbbX; Provisional
Probab=99.73 E-value=5.2e-17 Score=177.50 Aligned_cols=211 Identities=17% Similarity=0.299 Sum_probs=152.6
Q ss_pred ccccccCchhHHHHHHHHHHhhcccccccccccccCC-c--EEEECCCCCCchhHHHHhhhhh-------ccceeeeecc
Q 002754 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG-G--ILLCGPPGVGKTLLAKAVAGEA-------GVNFFSISAS 485 (884)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~-g--iLL~GPpGtGKTtLakaLA~el-------~~~~~~is~s 485 (884)
.+++..|+..++..+.+++........+...|+..+. | ++|+||||||||++|+++|..+ ..+++.++.+
T Consensus 21 l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 21 LDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 3457889999999999988765545555667776653 3 8999999999999999999865 2358889988
Q ss_pred hhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCC
Q 002754 486 QFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR 565 (884)
Q Consensus 486 ~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~ 565 (884)
++...|+|........+++.+ .++|+||||++.+...+ +.+.....++..|+..|+. ...+++||++++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~-----~~~~~~~e~~~~L~~~me~--~~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPD-----NERDYGSEAIEILLQVMEN--QRDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCC-----CccchHHHHHHHHHHHHhc--CCCCEEEEEeCCc
Confidence 888889888776666666654 35799999999885421 1122335577888888874 3466788887764
Q ss_pred CC-----CCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCC--CCccc---HHHHHhh--CCCCC-HHHHHHHHH
Q 002754 566 PD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM--ADDVD---YLAVASM--TDGMV-GAELANIVE 632 (884)
Q Consensus 566 ~~-----~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~--~~did---l~~lA~~--t~G~s-~adL~~Lv~ 632 (884)
.. .++|+|.+ ||+.+|.|++|+.+++..|+..++.+... .++.. ...+... .+.|. ++++++++.
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 32 34699998 99999999999999999999999876532 22211 1222222 23444 899999998
Q ss_pred HHHHHH
Q 002754 633 VAAINM 638 (884)
Q Consensus 633 ~A~~~A 638 (884)
.|...-
T Consensus 249 ~~~~~~ 254 (287)
T CHL00181 249 RARMRQ 254 (287)
T ss_pred HHHHHH
Confidence 886543
No 53
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.73 E-value=7.2e-17 Score=174.38 Aligned_cols=210 Identities=20% Similarity=0.309 Sum_probs=150.5
Q ss_pred cccccCchhHHHHHHHHHHhhcccccccccccccCC---cEEEECCCCCCchhHHHHhhhhh-------ccceeeeecch
Q 002754 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG---GILLCGPPGVGKTLLAKAVAGEA-------GVNFFSISASQ 486 (884)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~---giLL~GPpGtGKTtLakaLA~el-------~~~~~~is~s~ 486 (884)
+++..|++.++..++++..++.....+...|...++ +++|+|||||||||+|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 566889999999999988876544444556666543 48999999999999999999864 23677888888
Q ss_pred hhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCC
Q 002754 487 FVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (884)
Q Consensus 487 ~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~ 566 (884)
+...|+|.....+..+|+.+. ++|+||||++.+... .........++.|+..|+.. ..++++|++++..
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~ 153 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSD 153 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCcc
Confidence 888899888777777777653 579999999998531 11122345778888888853 4556666655433
Q ss_pred C-----CCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCC-cccHHHHHh---------hCCCCCHHHHHHHH
Q 002754 567 D-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVAS---------MTDGMVGAELANIV 631 (884)
Q Consensus 567 ~-----~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~-didl~~lA~---------~t~G~s~adL~~Lv 631 (884)
+ .++|++.+ ||+..|.||+|+.+++.+|++.++......- +.-+..++. ....-+++.+.+++
T Consensus 154 ~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 154 EMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred hhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 2 37889988 9999999999999999999999987654321 111223321 11224578888888
Q ss_pred HHHHHHHH
Q 002754 632 EVAAINMM 639 (884)
Q Consensus 632 ~~A~~~A~ 639 (884)
..|.....
T Consensus 232 e~a~~~~~ 239 (261)
T TIGR02881 232 EKAIRRQA 239 (261)
T ss_pred HHHHHHHH
Confidence 88765543
No 54
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.5e-17 Score=174.98 Aligned_cols=200 Identities=25% Similarity=0.313 Sum_probs=154.3
Q ss_pred EEEECCCCCCchhHHHHhhhhhc---------cceeeeecchhhhhhccccchhhhhHHHHHHhc---CCc--EEEhhhH
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAG---------VNFFSISASQFVEIYVGVGASRVRSLYQEAKDN---APS--VVFIDEL 519 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~---------~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~---~p~--Il~iDEI 519 (884)
+||+||||||||+|+|+||..+. ..++++++..+..++++...+.+..+|++.... ..+ .++|||+
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEV 259 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHH
Confidence 89999999999999999999772 357889999999999999999899999887542 222 4789999
Q ss_pred HHhhhhcC-CCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHH
Q 002754 520 DAVGRERG-LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILK 598 (884)
Q Consensus 520 d~l~~~r~-~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~ 598 (884)
++++..|. ..+++.......++|.+|.+||.+....||++++|+|..+.||.+|.. |-|.+.++.+|+...+.+|++
T Consensus 260 ESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilk 337 (423)
T KOG0744|consen 260 ESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILK 337 (423)
T ss_pred HHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHH
Confidence 99987663 222233334456899999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHccC---CC----------CCc-----ccHHHHHhh-CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 002754 599 VHARKK---PM----------ADD-----VDYLAVASM-TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (884)
Q Consensus 599 ~~l~~~---~~----------~~d-----idl~~lA~~-t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~ 657 (884)
..+.+. ++ ... .....++.. +.|.||+.|+.|=--|.. ..-....|+.+++..|+-.
T Consensus 338 scieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha--~y~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 338 SCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHA--EYFRTFTVDLSNFLLALLE 413 (423)
T ss_pred HHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHH--hccCCCccChHHHHHHHHH
Confidence 876543 10 001 111222322 589999999887665542 2233357999998888653
No 55
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.70 E-value=1.5e-17 Score=201.66 Aligned_cols=198 Identities=19% Similarity=0.267 Sum_probs=137.0
Q ss_pred chhhhHHHHHHHhcCCCCcccccCcccccccccCchhHHHHHHHHHHhhccccccccccccc---C-CcEEEECCCCCCc
Q 002754 389 QFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI---P-GGILLCGPPGVGK 464 (884)
Q Consensus 389 ~~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i---~-~giLL~GPpGtGK 464 (884)
+..++++++++|+|+|+......+..........+.+.+.++.+++..+.........|+.. | +.++|+|||||||
T Consensus 422 ~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGK 501 (758)
T PRK11034 422 NVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGK 501 (758)
T ss_pred ChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCH
Confidence 34567788899999998877665543332222233333444444444333332223334432 3 3499999999999
Q ss_pred hhHHHHhhhhhccceeeeecchhhhh-----hccccchh-----hhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCc
Q 002754 465 TLLAKAVAGEAGVNFFSISASQFVEI-----YVGVGASR-----VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGG 534 (884)
Q Consensus 465 TtLakaLA~el~~~~~~is~s~~~~~-----~~g~~~~~-----l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgg 534 (884)
|++|++||..++.+++.++++++.+. .+|...+. -..+.+.++..+++|++|||+|++.+.
T Consensus 502 T~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~--------- 572 (758)
T PRK11034 502 TEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD--------- 572 (758)
T ss_pred HHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHH---------
Confidence 99999999999999999999987542 23321111 123556667778899999999999765
Q ss_pred hhHHHHHHHHHHhhccc---------cCCCceEEEeccCCC-------------------------CCCCccCCCCCccc
Q 002754 535 QERDATLNQLLVCLDGF---------EGRGNVITIASTNRP-------------------------DILDPALVRPGRFD 580 (884)
Q Consensus 535 e~~~~~l~~LL~~ld~~---------~~~~~VlVIatTN~~-------------------------~~LdpaLlr~gRfd 580 (884)
+++.|++.||.. .+..+++||+|||.. ..+.|+|++ |+|
T Consensus 573 -----v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid 645 (758)
T PRK11034 573 -----VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLD 645 (758)
T ss_pred -----HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCC
Confidence 788888888742 123578999999932 125688888 999
Q ss_pred ccccCCCCChhhHHHHHHHHHc
Q 002754 581 RKIFIPKPGLIGRMEILKVHAR 602 (884)
Q Consensus 581 ~~I~~~~P~~eeR~~Il~~~l~ 602 (884)
.+|.|++++.++...|+...+.
T Consensus 646 ~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 646 NIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEEcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999887664
No 56
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.69 E-value=2.4e-16 Score=172.29 Aligned_cols=209 Identities=19% Similarity=0.294 Sum_probs=153.1
Q ss_pred cccCchhHHHHHHHHHHhhccccccccccccc--CC-cEEEECCCCCCchhHHHHhhhhhc-------cceeeeecchhh
Q 002754 419 DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI--PG-GILLCGPPGVGKTLLAKAVAGEAG-------VNFFSISASQFV 488 (884)
Q Consensus 419 ~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i--~~-giLL~GPpGtGKTtLakaLA~el~-------~~~~~is~s~~~ 488 (884)
...|+..++..+.+++.....+..+...|+.. |+ +++|+||||||||++|+++|..+. .+++.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 47899999999999888766666667777765 32 599999999999999999988662 368899988888
Q ss_pred hhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCC--
Q 002754 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-- 566 (884)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~-- 566 (884)
..|+|.....+..+|+.+. +++|||||++.+...+. .......+++.|+..|+. ...+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRM 172 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHH
Confidence 8888887776777777653 47999999998853211 112334577788888873 34678888777543
Q ss_pred C---CCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhh-------CCCCCHHHHHHHHHHHH
Q 002754 567 D---ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASM-------TDGMVGAELANIVEVAA 635 (884)
Q Consensus 567 ~---~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~-------t~G~s~adL~~Lv~~A~ 635 (884)
+ .++|+|.+ ||+..|.||+|+.+++..|++.++.+.... +......+..+ ..--++++++++++.+.
T Consensus 173 ~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 173 DSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRAR 250 (284)
T ss_pred HHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 2 25899999 999999999999999999999999775432 11112233322 11235789999998886
Q ss_pred HHHH
Q 002754 636 INMM 639 (884)
Q Consensus 636 ~~A~ 639 (884)
..-.
T Consensus 251 ~~~~ 254 (284)
T TIGR02880 251 LRQA 254 (284)
T ss_pred HHHH
Confidence 5543
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.69 E-value=4.8e-17 Score=199.05 Aligned_cols=198 Identities=22% Similarity=0.257 Sum_probs=139.5
Q ss_pred hchhhhHHHHHHHhcCCCCcccccCcccccccccCchhHHHHHHHHHHhhccccccccccccc---CC-cEEEECCCCCC
Q 002754 388 MQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI---PG-GILLCGPPGVG 463 (884)
Q Consensus 388 v~~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i---~~-giLL~GPpGtG 463 (884)
++..++...+++|+|+|+......+..........+.+.+.++++++..+.......+.|+.. |. .++|+||+|||
T Consensus 417 v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvG 496 (731)
T TIGR02639 417 VSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVG 496 (731)
T ss_pred cCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCcc
Confidence 444566777778888887665444333222222233444444444444443333334455543 33 38999999999
Q ss_pred chhHHHHhhhhhccceeeeecchhhhh------------hccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCC
Q 002754 464 KTLLAKAVAGEAGVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 531 (884)
Q Consensus 464 KTtLakaLA~el~~~~~~is~s~~~~~------------~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~ 531 (884)
||+||++||..++.++++++++++.+. |+|.... +.+.+.++..+++|++|||+|++++.
T Consensus 497 KT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~--~~l~~~~~~~p~~VvllDEieka~~~------ 568 (731)
T TIGR02639 497 KTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQG--GLLTEAVRKHPHCVLLLDEIEKAHPD------ 568 (731)
T ss_pred HHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchh--hHHHHHHHhCCCeEEEEechhhcCHH------
Confidence 999999999999999999999987653 2332222 34667777888899999999998766
Q ss_pred CCchhHHHHHHHHHHhhccc---------cCCCceEEEeccCCCC-------------------------CCCccCCCCC
Q 002754 532 SGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD-------------------------ILDPALVRPG 577 (884)
Q Consensus 532 Sgge~~~~~l~~LL~~ld~~---------~~~~~VlVIatTN~~~-------------------------~LdpaLlr~g 577 (884)
+++.|++.||+. .+..+++||+|||... .+.|+|+.
T Consensus 569 --------~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~-- 638 (731)
T TIGR02639 569 --------IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN-- 638 (731)
T ss_pred --------HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--
Confidence 788888888752 1245789999998742 25678877
Q ss_pred cccccccCCCCChhhHHHHHHHHHcc
Q 002754 578 RFDRKIFIPKPGLIGRMEILKVHARK 603 (884)
Q Consensus 578 Rfd~~I~~~~P~~eeR~~Il~~~l~~ 603 (884)
|||.+|.|.+++.++...|++..+.+
T Consensus 639 Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 639 RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987753
No 58
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.9e-16 Score=178.89 Aligned_cols=221 Identities=24% Similarity=0.394 Sum_probs=176.4
Q ss_pred HHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccchhhhhHHHHHHhcCC
Q 002754 432 EIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAP 511 (884)
Q Consensus 432 ~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p 511 (884)
.++..+.-+..-...+.+....+||+|+||||||+++++.|.+++.+++.++|.++.....+..+..+...|..++...|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 34444443333344555666679999999999999999999999999999999999888777788888999999999999
Q ss_pred cEEEhhhHHHhhhhcCCCCCCCchhH--HHHHHHHHHhhcccc-CCCceEEEeccCCCCCCCccCCCCCcccccccCCCC
Q 002754 512 SVVFIDELDAVGRERGLIKGSGGQER--DATLNQLLVCLDGFE-GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKP 588 (884)
Q Consensus 512 ~Il~iDEId~l~~~r~~~~~Sgge~~--~~~l~~LL~~ld~~~-~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P 588 (884)
+|||+-++|.++.+.. ||+-. -..++.++. ++.+. ....++||++|+..+.+++.+.+ -|-..|.++.|
T Consensus 492 avifl~~~dvl~id~d-----gged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~l 563 (953)
T KOG0736|consen 492 AVLFLRNLDVLGIDQD-----GGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPAL 563 (953)
T ss_pred eEEEEeccceeeecCC-----CchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCC
Confidence 9999999999875432 22222 234445554 33333 56789999999999999999988 78889999999
Q ss_pred ChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH---hC-----------------CCccCH
Q 002754 589 GLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMR---DG-----------------RTEITT 648 (884)
Q Consensus 589 ~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~---~~-----------------~~~It~ 648 (884)
+.++|.+||+.++....+..++.+..++..+.||+.+|+..++..+-..+.. +. ...++.
T Consensus 564 se~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~ 643 (953)
T KOG0736|consen 564 SEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTE 643 (953)
T ss_pred CHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecH
Confidence 9999999999999999999999999999999999999999988766222211 11 146999
Q ss_pred HHHHHHHHHHHc
Q 002754 649 DDLLQAAQIEER 660 (884)
Q Consensus 649 edi~~Al~~~~~ 660 (884)
+||..|+.+...
T Consensus 644 edf~kals~~~~ 655 (953)
T KOG0736|consen 644 EDFDKALSRLQK 655 (953)
T ss_pred HHHHHHHHHHHH
Confidence 999999986643
No 59
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.67 E-value=3.8e-16 Score=182.52 Aligned_cols=239 Identities=23% Similarity=0.271 Sum_probs=165.6
Q ss_pred hhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcChhHHHhh
Q 002754 309 DSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAM 388 (884)
Q Consensus 309 ~~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v 388 (884)
.++.|.++ ..++++.|.|||+.|.+++++ +.....++++.+++++++++..+.+......+..++ .
T Consensus 216 V~t~I~~l-d~g~l~~y~Gny~~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a-----------~ 281 (530)
T COG0488 216 VATHILEL-DRGKLTPYKGNYSSYLEQKAE--RLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKA-----------K 281 (530)
T ss_pred HhhheEEe-cCCceeEecCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH-----------H
Confidence 46778888 888999999999999999994 444445555556777777777776544222211111 1
Q ss_pred chhhhHHHHHHHhcCCCCcccccCccccccccc-CchhHHHHHHHHHHhhcc-cccccccccccCCc--EEEECCCCCCc
Q 002754 389 QFMKSGARVRRAYGKGLPQYLERGVDVKFSDVA-GLGKIRLELEEIVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVGK 464 (884)
Q Consensus 389 ~~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~-gl~~~~~~l~~lv~~~~~-~~~~~~~g~~i~~g--iLL~GPpGtGK 464 (884)
+..+..+.+........+........+.|+... ..++.+++++++...|.. ..++.++++.+.+| |.|+||||+||
T Consensus 282 sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GK 361 (530)
T COG0488 282 SRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGK 361 (530)
T ss_pred HHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCH
Confidence 111111111110000011111222334666665 478899999999999966 47888999999887 99999999999
Q ss_pred hhHHHHhhhhhccceeeeecchhhhh-hccccchhh---hhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCC---------
Q 002754 465 TLLAKAVAGEAGVNFFSISASQFVEI-YVGVGASRV---RSLYQEAKDNAPSVVFIDELDAVGRERGLIKG--------- 531 (884)
Q Consensus 465 TtLakaLA~el~~~~~~is~s~~~~~-~~g~~~~~l---~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~--------- 531 (884)
|||+|.|++.+++..+.+.++..+.. |+.|....+ ..+++.++...|... --++..++...++.+.
T Consensus 362 STLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~-e~~~r~~L~~f~F~~~~~~~~v~~L 440 (530)
T COG0488 362 STLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD-EQEVRAYLGRFGFTGEDQEKPVGVL 440 (530)
T ss_pred HHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc-HHHHHHHHHHcCCChHHHhCchhhc
Confidence 99999999999888888887765433 666655433 367888888777533 5677777777665443
Q ss_pred CCchhHHHHHHHHHHhhccccCCCceEEE-eccCCCCC
Q 002754 532 SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 568 (884)
Q Consensus 532 Sgge~~~~~l~~LL~~ld~~~~~~~VlVI-atTN~~~~ 568 (884)
|||++.|..++.++ ..++|++|+ .+||++|.
T Consensus 441 SGGEk~Rl~La~ll------~~~pNvLiLDEPTNhLDi 472 (530)
T COG0488 441 SGGEKARLLLAKLL------LQPPNLLLLDEPTNHLDI 472 (530)
T ss_pred CHhHHHHHHHHHHh------ccCCCEEEEcCCCccCCH
Confidence 99999999999998 668899999 99999874
No 60
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.4e-15 Score=174.67 Aligned_cols=237 Identities=24% Similarity=0.254 Sum_probs=169.7
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhc----cceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcC
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAG----VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~----~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~ 527 (884)
++++|.||+|+|||.|+++|+.+.. .++..++|+.+...-+......+..+|..+..+.|+|+++|++|.+.+...
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~ 511 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS 511 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc
Confidence 4599999999999999999999774 456677888766554444555668889999999999999999999976211
Q ss_pred CCCCCCchhHHHHHHHHH-HhhccccC-CCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCC
Q 002754 528 LIKGSGGQERDATLNQLL-VCLDGFEG-RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 605 (884)
Q Consensus 528 ~~~~Sgge~~~~~l~~LL-~~ld~~~~-~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~ 605 (884)
. .++........++.++ +.+..+.. +..+.||++.+....++|.|.+|++|+.++.+|.|+..+|.+|++..+.+..
T Consensus 512 ~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 512 N-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred c-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 1 1111222222334444 33333333 3447889999999999999999999999999999999999999999887765
Q ss_pred CC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHHcCCcccccc--ch-hhh-HHH
Q 002754 606 MA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD----GRTEITTDDLLQAAQIEERGMLDRKER--SS-ETW-RQV 676 (884)
Q Consensus 606 ~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~----~~~~It~edi~~Al~~~~~g~~~~~~~--~~-~~~-~~v 676 (884)
.. ...|++.++..|+||...|+..++.+|...|..+ +...+|.++|..+++............ +. -.| ..-
T Consensus 591 ~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~dig 670 (952)
T KOG0735|consen 591 SDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIG 670 (952)
T ss_pred hhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecc
Confidence 22 2234555999999999999999999998887732 334899999999998653321111111 11 111 234
Q ss_pred HHHHHHHHHHHHh
Q 002754 677 AINEAAMAVVAVN 689 (884)
Q Consensus 677 A~hEaGhAvva~l 689 (884)
.+||+-.++-..+
T Consensus 671 g~~~~k~~l~~~i 683 (952)
T KOG0735|consen 671 GLFEAKKVLEEVI 683 (952)
T ss_pred cHHHHHHHHHHHH
Confidence 6777777775543
No 61
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.55 E-value=8.9e-14 Score=155.26 Aligned_cols=214 Identities=21% Similarity=0.249 Sum_probs=151.6
Q ss_pred cccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhc
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 492 (884)
.+..|++..|..+.+..+..++...... -..+.+++|+||||||||+||+++|++++..+..++...+.
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4557888889888887777666543211 12345699999999999999999999998877666544321
Q ss_pred cccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc----------------CCCc
Q 002754 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGN 556 (884)
Q Consensus 493 g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~----------------~~~~ 556 (884)
....+..++... ..++++||||++.+... ....++..|+... .-.+
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcchH--------------HHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 112233334332 34679999999988532 1122223232211 1134
Q ss_pred eEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 002754 557 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAA 635 (884)
Q Consensus 557 VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~ 635 (884)
+.+|++||.+..++++|.+ ||+..+.|++|+.+++.+|++..+....+. ++..+..++..+.|.. +.+..+++.+.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHH
Confidence 7888999999999999988 999899999999999999999887765443 2233677888887754 66778888887
Q ss_pred HHHHHhCCCccCHHHHHHHHHHH
Q 002754 636 INMMRDGRTEITTDDLLQAAQIE 658 (884)
Q Consensus 636 ~~A~~~~~~~It~edi~~Al~~~ 658 (884)
..+...+...|+.+++..++...
T Consensus 228 ~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 228 DFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHh
Confidence 77776666789999999998754
No 62
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.3e-13 Score=160.09 Aligned_cols=216 Identities=42% Similarity=0.681 Sum_probs=190.1
Q ss_pred cccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhH
Q 002754 440 GEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDEL 519 (884)
Q Consensus 440 ~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEI 519 (884)
+..+..++...+.+++++||||+|||+++++++.. +..+..++.......++|.....++.+|..+....|+++++|++
T Consensus 7 ~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~ 85 (494)
T COG0464 7 PELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEI 85 (494)
T ss_pred HHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechh
Confidence 44567788899999999999999999999999998 66567778888888899999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHH
Q 002754 520 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKV 599 (884)
Q Consensus 520 d~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~ 599 (884)
+.+.+.+.. ..+...+.+...++..++++. ...+++++.||.+..+++++.++|||++.+.++.|+...+.+|+..
T Consensus 86 ~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~ 161 (494)
T COG0464 86 DALAPKRSS---DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQI 161 (494)
T ss_pred hhcccCccc---cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHH
Confidence 999877654 445566678899999999888 4448888999999999999999999999999999999999999999
Q ss_pred HHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC------CCccCHHHHHHHHHHHHc
Q 002754 600 HARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG------RTEITTDDLLQAAQIEER 660 (884)
Q Consensus 600 ~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~------~~~It~edi~~Al~~~~~ 660 (884)
+........+.+...++..+.|++++++..++..+...+.++. ...++.+++..+++.+..
T Consensus 162 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 162 HTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 9988888778899999999999999999999999888887774 346899999999988643
No 63
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.54 E-value=1.4e-13 Score=151.82 Aligned_cols=210 Identities=21% Similarity=0.276 Sum_probs=145.6
Q ss_pred ccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhcccc
Q 002754 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG 495 (884)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~ 495 (884)
.|.+..|..+.+..+..++...... -..+.+++|+||||||||+|++++|.+++.++..+..+....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 4677788888877776665433211 123456999999999999999999999987765554432211
Q ss_pred chhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc----------------CCCceEE
Q 002754 496 ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGNVIT 559 (884)
Q Consensus 496 ~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~----------------~~~~VlV 559 (884)
...+...+... ..+.++||||++.+... ....|+..|++.. ....+++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 11122222222 34679999999988543 2222333332211 1234788
Q ss_pred EeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 002754 560 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINM 638 (884)
Q Consensus 560 IatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A 638 (884)
|++||.+..+++++++ ||...+.|++|+.+++.+|++..+...... ++..+..++..+.|.. +.+..+++.+...|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHH
Confidence 8999999999999988 998889999999999999999887654332 2334677888888755 66678888877777
Q ss_pred HHhCCCccCHHHHHHHHHH
Q 002754 639 MRDGRTEITTDDLLQAAQI 657 (884)
Q Consensus 639 ~~~~~~~It~edi~~Al~~ 657 (884)
...+...|+.+++..++..
T Consensus 210 ~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 210 QVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHcCCCCcCHHHHHHHHHH
Confidence 6666677999999999876
No 64
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.52 E-value=1.6e-13 Score=151.00 Aligned_cols=177 Identities=26% Similarity=0.417 Sum_probs=126.6
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccchhhhhHHHHHHhcC----CcEEEhhhHHHhhhhcC
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA----PSVVFIDELDAVGRERG 527 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~----p~Il~iDEId~l~~~r~ 527 (884)
.+++|||||||||||||++||+..+..|..++... .+.+.++.+++.++... -.|+|+|||+.|...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-- 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-- 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--
Confidence 45899999999999999999999999999988643 23355788888885433 369999999998654
Q ss_pred CCCCCCchhHHHHHHHHHHhhccccCCCceEEEecc--CCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHc--c
Q 002754 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR--K 603 (884)
Q Consensus 528 ~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatT--N~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~--~ 603 (884)
....||-.++ ++.+++|++| |..-.+.++|++++| ++.+.+.+.++...+++.-+. .
T Consensus 120 ------------QQD~lLp~vE----~G~iilIGATTENPsF~ln~ALlSR~~---vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 120 ------------QQDALLPHVE----NGTIILIGATTENPSFELNPALLSRAR---VFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred ------------hhhhhhhhhc----CCeEEEEeccCCCCCeeecHHHhhhhh---eeeeecCCHHHHHHHHHHHHhhhh
Confidence 4566776655 5677888655 666789999999553 788999999999999987432 2
Q ss_pred CCCC------CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 002754 604 KPMA------DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 659 (884)
Q Consensus 604 ~~~~------~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~ 659 (884)
.++. ++.-...++..+.|-..+-| ++++.+...+ +.+. .++.+++.+.+.+..
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL-N~LE~~~~~~-~~~~-~~~~~~l~~~l~~~~ 239 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARRAL-NLLELAALSA-EPDE-VLILELLEEILQRRS 239 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHHHH-HHHHHHHHhc-CCCc-ccCHHHHHHHHhhhh
Confidence 2222 23345667788877655555 5555554333 2222 455888888877643
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.52 E-value=7.6e-14 Score=144.71 Aligned_cols=190 Identities=22% Similarity=0.297 Sum_probs=121.6
Q ss_pred cccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhc
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 492 (884)
.+..|++..|..+.+..+.-++...... -....+++|+||||+||||||+.||++++.++..++...+..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 5668999999998887666555443211 112245899999999999999999999999998877643211
Q ss_pred cccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc-----C-----------CCc
Q 002754 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G-----------RGN 556 (884)
Q Consensus 493 g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~-----~-----------~~~ 556 (884)
...+..++..+. ...|+|||||+.+... +...|+..|+++. + -.+
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRlnk~--------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRLNKA--------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC--HH--------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhccHH--------------HHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 122333333332 3569999999998654 6677777777532 1 134
Q ss_pred eEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCc-ccHHHHHhhCCCCCHHHHHHHHHHH
Q 002754 557 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANIVEVA 634 (884)
Q Consensus 557 VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~d-idl~~lA~~t~G~s~adL~~Lv~~A 634 (884)
+.+|++|+....+.++|+. ||..+..+..|+.++...|++.......+.-+ .....+|.++.| +|+-..++++.+
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 8899999999999999998 99988899999999999999987766655433 335678888776 555455666554
No 66
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.51 E-value=5.1e-14 Score=161.61 Aligned_cols=211 Identities=19% Similarity=0.268 Sum_probs=141.8
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh-----ccceeeeecchhhhhhccccc-hhhhhHHHHHHhcCCcEEEhhhHHHhhhh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGA-SRVRSLYQEAKDNAPSVVFIDELDAVGRE 525 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~-~~l~~lf~~a~~~~p~Il~iDEId~l~~~ 525 (884)
.+++|+||+|+|||+|+++++.++ +..++++++.++...+..... ..+..+.+..+ .+++|+|||++.+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 348999999999999999999876 456788888776654332211 11222223332 3679999999987533
Q ss_pred cCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCC---CCccCCCCCccc--ccccCCCCChhhHHHHHHHH
Q 002754 526 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 600 (884)
Q Consensus 526 r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~---LdpaLlr~gRfd--~~I~~~~P~~eeR~~Il~~~ 600 (884)
. . ....|+..++........+||++++.|.. +++.+.+ ||. ..+.|++|+.++|..|++..
T Consensus 215 ~---------~---~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 215 E---------R---TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred H---------H---HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1 1 22334444443333444566666666654 5678887 885 47899999999999999999
Q ss_pred HccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCCccccccchhhhHHHHHH
Q 002754 601 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAIN 679 (884)
Q Consensus 601 l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~g~~~~~~~~~~~~~~vA~h 679 (884)
+...++. ++..+..+|.... -+.++|..+++.....|...+ ..||.+.+.+++...... ..+.+..+
T Consensus 281 ~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~~~----------~~~~it~~ 348 (405)
T TIGR00362 281 AEEEGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYASLTG-KPITLELAKEALKDLLRA----------KKKEITIE 348 (405)
T ss_pred HHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhccc----------cCCCCCHH
Confidence 8765443 3334667777665 467889999998877776555 469999999988754322 12246677
Q ss_pred HHHHHHHHHhC
Q 002754 680 EAAMAVVAVNF 690 (884)
Q Consensus 680 EaGhAvva~ll 690 (884)
++.++|..++-
T Consensus 349 ~I~~~Va~~~~ 359 (405)
T TIGR00362 349 NIQEVVAKYYN 359 (405)
T ss_pred HHHHHHHHHcC
Confidence 78888777654
No 67
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.50 E-value=4.9e-14 Score=163.91 Aligned_cols=269 Identities=16% Similarity=0.221 Sum_probs=164.5
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh-----ccceeeeecchhhhhhccccch-hhhhHHHHHHhcCCcEEEhhhHHHhhhh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGAS-RVRSLYQEAKDNAPSVVFIDELDAVGRE 525 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~~-~l~~lf~~a~~~~p~Il~iDEId~l~~~ 525 (884)
.+++|+||+|+|||+|+++++.++ +..++++++.++...+...... ....+.+..+ .+++|+|||++.+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 348999999999999999999987 4557788888776554332211 1122333333 4679999999987543
Q ss_pred cCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCC---CCccCCCCCccc--ccccCCCCChhhHHHHHHHH
Q 002754 526 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 600 (884)
Q Consensus 526 r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~---LdpaLlr~gRfd--~~I~~~~P~~eeR~~Il~~~ 600 (884)
. . ....|+..++.+...+..+||+++..|.. +++.+.+ ||. .++.|.+|+.++|..|++..
T Consensus 227 ~---------~---~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 227 E---------R---TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred H---------H---HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHH
Confidence 1 1 22334444444334444566666666654 6688887 885 57899999999999999998
Q ss_pred HccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCCccccccchhhhHHHHHH
Q 002754 601 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAIN 679 (884)
Q Consensus 601 l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~g~~~~~~~~~~~~~~vA~h 679 (884)
+...++. ++..+..+|.... -+.+.|..+++.....+...++ .||.+.+.+++...... .. +.+.+.
T Consensus 293 ~~~~~~~l~~e~l~~ia~~~~-~~~R~l~~~l~~l~~~~~~~~~-~it~~~~~~~l~~~~~~--~~--------~~~~~~ 360 (450)
T PRK00149 293 AEEEGIDLPDEVLEFIAKNIT-SNVRELEGALNRLIAYASLTGK-PITLELAKEALKDLLAA--QK--------KKITIE 360 (450)
T ss_pred HHHcCCCCCHHHHHHHHcCcC-CCHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHhhcc--CC--------CCCCHH
Confidence 8765432 3334666777665 4678888888888777665554 59999999999865322 11 123344
Q ss_pred HHHHHHHHHhCCCCCCcceeeecCCCCCcccceeeccccccccccccCHHHHHHHHHHhhhhhhHHHHHcCCCcccc
Q 002754 680 EAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLST 756 (884)
Q Consensus 680 EaGhAvva~ll~~~~~v~~vsI~pr~g~~lG~~~~~~~e~~~~~~~~Tr~~l~~~I~v~LaGRAAEel~fG~~~~st 756 (884)
++-.+|..++--....+..-+-.+....+....+|...+ +|.. -+..|+..||||-+-.++++...+..
T Consensus 361 ~i~~~v~~~~~i~~~~l~~~~R~~~~~~aR~iamyl~~~-------~~~~-s~~~Ig~~fg~rdhstV~~a~~~i~~ 429 (450)
T PRK00149 361 NIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKE-------LTDL-SLPEIGRAFGGRDHTTVLHAVRKIEK 429 (450)
T ss_pred HHHHHHHHHcCCCHHHHhCCCCCcccChHHHHHHHHHHH-------hcCC-CHHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 455555554432212211101010101122333333322 1111 15669999999988888887644433
No 68
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.48 E-value=8.1e-13 Score=139.43 Aligned_cols=214 Identities=22% Similarity=0.257 Sum_probs=159.7
Q ss_pred cccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhc
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 492 (884)
++..|.+..|..+++..++=.+.+-+.. -....++||+||||.||||||..||.+++..+-..++..+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 4667888889888886666555442211 223345999999999999999999999999887776654322
Q ss_pred cccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc----------------CCCc
Q 002754 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGN 556 (884)
Q Consensus 493 g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~----------------~~~~ 556 (884)
.+.+..++..+ ...+|+|||||+.+.+. +-..|+..|++|. +-..
T Consensus 91 ---~gDlaaiLt~L--e~~DVLFIDEIHrl~~~--------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ---PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ---hhhHHHHHhcC--CcCCeEEEehhhhcChh--------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 12222333332 34579999999998764 5556666776642 1245
Q ss_pred eEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCc-ccHHHHHhhCCCCCHHHHHHHHHHHH
Q 002754 557 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANIVEVAA 635 (884)
Q Consensus 557 VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~d-idl~~lA~~t~G~s~adL~~Lv~~A~ 635 (884)
+.+|++|.+..++...|+. ||.....+..|+.++...|+........+.-+ .....+|.++.| +++-...|+++..
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 8899999999999999988 99999999999999999999988766655433 335678888776 5555568999999
Q ss_pred HHHHHhCCCccCHHHHHHHHHHH
Q 002754 636 INMMRDGRTEITTDDLLQAAQIE 658 (884)
Q Consensus 636 ~~A~~~~~~~It~edi~~Al~~~ 658 (884)
..|.-.+...|+.+-...|+...
T Consensus 229 Dfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 229 DFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHhcCCcccHHHHHHHHHHh
Confidence 99988899999999999998765
No 69
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.48 E-value=4.1e-13 Score=164.68 Aligned_cols=198 Identities=24% Similarity=0.357 Sum_probs=143.5
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhh----------ccceeeeecchhh--hhhccccchhhhhHHHHHHhcCCcEEEhhh
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKDNAPSVVFIDE 518 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~--~~~~g~~~~~l~~lf~~a~~~~p~Il~iDE 518 (884)
..+++|+||||||||++++.||..+ +..++.++++.+. ..|.|.....++.+|+.+....++|+||||
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDE 282 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDE 282 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEec
Confidence 3468999999999999999999976 6678888888776 458888888999999998877889999999
Q ss_pred HHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCC-----CCCccCCCCCcccccccCCCCChhhH
Q 002754 519 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGR 593 (884)
Q Consensus 519 Id~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~-----~LdpaLlr~gRfd~~I~~~~P~~eeR 593 (884)
+|.+.+... .++|.. ...+.|...+. ++.+.+|++||..+ ..|++|.| ||. .|.|+.|+.+++
T Consensus 283 ih~l~~~g~---~~~~~~--~~~~~L~~~l~----~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~ 350 (731)
T TIGR02639 283 IHTIVGAGA---TSGGSM--DASNLLKPALS----SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEET 350 (731)
T ss_pred HHHHhccCC---CCCccH--HHHHHHHHHHh----CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHH
Confidence 999975431 122221 12233443333 56789999998643 47999999 997 799999999999
Q ss_pred HHHHHHHHccC----CC-CCcccHHHHHhhCCCCC-----HHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHH
Q 002754 594 MEILKVHARKK----PM-ADDVDYLAVASMTDGMV-----GAELANIVEVAAINMMRD----GRTEITTDDLLQAAQIEE 659 (884)
Q Consensus 594 ~~Il~~~l~~~----~~-~~didl~~lA~~t~G~s-----~adL~~Lv~~A~~~A~~~----~~~~It~edi~~Al~~~~ 659 (884)
..|++...... .+ ..+..+..++..+..|- |.....++++|+...... ....|+.+|+..++....
T Consensus 351 ~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 351 VKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 99999665431 11 23344556666655543 444457888877544332 234699999999998765
Q ss_pred c
Q 002754 660 R 660 (884)
Q Consensus 660 ~ 660 (884)
.
T Consensus 431 g 431 (731)
T TIGR02639 431 H 431 (731)
T ss_pred C
Confidence 3
No 70
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.43 E-value=2e-12 Score=157.33 Aligned_cols=198 Identities=24% Similarity=0.348 Sum_probs=137.8
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhh----------ccceeeeecchhh--hhhccccchhhhhHHHHHHhcCCcEEEhhh
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKDNAPSVVFIDE 518 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~--~~~~g~~~~~l~~lf~~a~~~~p~Il~iDE 518 (884)
..+++|+||||||||++++.++..+ +..++.++.+.+. ..|.|.....++.++..+....++|+||||
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDE 286 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE 286 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEecc
Confidence 3457999999999999999999754 3445555555544 346777777888899988888889999999
Q ss_pred HHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCC-----CCCccCCCCCcccccccCCCCChhhH
Q 002754 519 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGR 593 (884)
Q Consensus 519 Id~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~-----~LdpaLlr~gRfd~~I~~~~P~~eeR 593 (884)
++.+.+.+. .++++. ...+.|... ..++.+.+|++||..+ ..|++|.| ||+ .|.|+.|+.+++
T Consensus 287 Ih~L~g~g~---~~~g~~--d~~nlLkp~----L~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~ 354 (758)
T PRK11034 287 IHTIIGAGA---ASGGQV--DAANLIKPL----LSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEET 354 (758)
T ss_pred HHHHhccCC---CCCcHH--HHHHHHHHH----HhCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHH
Confidence 999976531 122221 122222222 2467899999998765 47999999 997 899999999999
Q ss_pred HHHHHHHHccCCCCCccc-----HHHHHh-----hCCCCCHHHHHHHHHHHHHHHHH----hCCCccCHHHHHHHHHHHH
Q 002754 594 MEILKVHARKKPMADDVD-----YLAVAS-----MTDGMVGAELANIVEVAAINMMR----DGRTEITTDDLLQAAQIEE 659 (884)
Q Consensus 594 ~~Il~~~l~~~~~~~did-----l~~lA~-----~t~G~s~adL~~Lv~~A~~~A~~----~~~~~It~edi~~Al~~~~ 659 (884)
..|++.+........++. +...+. .+..+.|.....++++|+..... ..+..|+.+|+.+.+.+..
T Consensus 355 ~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 355 VQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 999997765443322222 222222 23445677888999999854322 2234689999999888765
Q ss_pred c
Q 002754 660 R 660 (884)
Q Consensus 660 ~ 660 (884)
.
T Consensus 435 g 435 (758)
T PRK11034 435 R 435 (758)
T ss_pred C
Confidence 4
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2e-12 Score=148.49 Aligned_cols=210 Identities=20% Similarity=0.245 Sum_probs=142.4
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccce-------eee-
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-------FSI- 482 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~-------~~i- 482 (884)
+.++..|+++.|...++..+...+.. -+++..++|+||+||||||+|+.+|..++... +.+
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 34677899999988888766665542 23445589999999999999999999875421 000
Q ss_pred ecchh--------hhh--hccccchhhhhHHHHHH----hcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhh
Q 002754 483 SASQF--------VEI--YVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (884)
Q Consensus 483 s~s~~--------~~~--~~g~~~~~l~~lf~~a~----~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~l 548 (884)
+|..+ ... ....+...++.+.+.+. ...+.|++|||+|.+... .++.||..|
T Consensus 80 sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~--------------A~NALLKtL 145 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ--------------SFNALLKTL 145 (484)
T ss_pred HHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH--------------HHHHHHHHh
Confidence 00000 000 00011223444544443 234569999999998654 788999888
Q ss_pred ccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHH
Q 002754 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (884)
Q Consensus 549 d~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL 627 (884)
+ ....+++||.+|+.++.+++.+++ |+. ++.|.+++.++....++..+...++. ++..+..++..+.|- .++.
T Consensus 146 E--EPp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd-~RdA 219 (484)
T PRK14956 146 E--EPPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS-VRDM 219 (484)
T ss_pred h--cCCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh-HHHH
Confidence 8 455788999888889999999999 654 78899999988888888877654432 334467788877764 5556
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 628 ANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 628 ~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
.+++..+... ....||.+++.+.+
T Consensus 220 L~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 220 LSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 5777766532 22359999887765
No 72
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.41 E-value=1.8e-12 Score=153.25 Aligned_cols=214 Identities=27% Similarity=0.329 Sum_probs=144.6
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh----------ccceee
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFS 481 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~ 481 (884)
.+...|++..|....+..+..... ...+.+++|+||||||||++|+++...+ +.+|+.
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 355678888888877766654321 1124569999999999999999997642 357888
Q ss_pred eecchh-------hhhhcccc-------chhh------hhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHH
Q 002754 482 ISASQF-------VEIYVGVG-------ASRV------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATL 541 (884)
Q Consensus 482 is~s~~-------~~~~~g~~-------~~~l------~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l 541 (884)
+++... .+..++.. ...+ ..-...+.....+++||||++.+... .+
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~--------------~q 192 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV--------------QM 192 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH--------------HH
Confidence 887531 11111100 0000 00000122334579999999998665 56
Q ss_pred HHHHHhhcccc--------------------------CCCceEEE-eccCCCCCCCccCCCCCcccccccCCCCChhhHH
Q 002754 542 NQLLVCLDGFE--------------------------GRGNVITI-ASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM 594 (884)
Q Consensus 542 ~~LL~~ld~~~--------------------------~~~~VlVI-atTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~ 594 (884)
+.|+..|+... -..++.+| +|||.++.++|++++ |+. .|.|++++.+++.
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHH
Confidence 66666554310 01234444 667889999999998 875 7889999999999
Q ss_pred HHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 595 EILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 595 ~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
.|++..+++..+. ++..+..++..+ ++++++.++++.|+..|..+++..|+.+|+..++.
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 9999998766543 223345555554 37899999999999888888888999999999975
No 73
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.4e-12 Score=153.06 Aligned_cols=210 Identities=17% Similarity=0.219 Sum_probs=143.1
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc------------
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (884)
+.....|+++.|.+.++..+.+.+.. .+++..+||+||+|+||||+++.||..+...
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 34677899999999888777766542 2345668999999999999999999987641
Q ss_pred eeee-ecc-----hhhhhh-c----cccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHH
Q 002754 479 FFSI-SAS-----QFVEIY-V----GVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (884)
Q Consensus 479 ~~~i-s~s-----~~~~~~-~----g~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~ 543 (884)
.+.+ +|. .+.+.+ + ..+...++.+.+.+.. ....|++|||+|.+... .+|.
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~--------------AaNA 143 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH--------------AFNA 143 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH--------------HHHH
Confidence 1111 000 000100 0 0112334555555432 34579999999998654 7889
Q ss_pred HHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCc-ccHHHHHhhCCCC
Q 002754 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGM 622 (884)
Q Consensus 544 LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~d-idl~~lA~~t~G~ 622 (884)
||..|+ ....+++||.+||.++.|.+.+++ |+ ..+.|..++.++..+.++..+...++..+ ..+..++..+.|
T Consensus 144 LLKTLE--EPP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G- 217 (700)
T PRK12323 144 MLKTLE--EPPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG- 217 (700)
T ss_pred HHHhhc--cCCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 999998 455788999999999999999999 65 48999999999999988887765444322 335667777665
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 623 s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
+.++..+++..+.. .+...|+.+++...+
T Consensus 218 s~RdALsLLdQaia----~~~~~It~~~V~~~L 246 (700)
T PRK12323 218 SMRDALSLTDQAIA----YSAGNVSEEAVRGML 246 (700)
T ss_pred CHHHHHHHHHHHHH----hccCCcCHHHHHHHh
Confidence 45566677776653 233457777776543
No 74
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=3.9e-12 Score=147.87 Aligned_cols=204 Identities=20% Similarity=0.242 Sum_probs=136.9
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc-------------
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 478 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~------------- 478 (884)
.++..|+++.|....+..+...+.. -.+|.+++|+|||||||||+|+++|..++..
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 4677889999988776655554331 1356678999999999999999999987541
Q ss_pred -----------eeeeecchhhhhhccccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHH
Q 002754 479 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (884)
Q Consensus 479 -----------~~~is~s~~~~~~~g~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~ 543 (884)
++.++.+. ..+...++.+.+.+.. ....|++|||++.+... .++.
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~--------------a~~~ 136 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE--------------AFNA 136 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH--------------HHHH
Confidence 22222211 1112234444444432 23469999999988543 5678
Q ss_pred HHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCC-CCcccHHHHHhhCCCC
Q 002754 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGM 622 (884)
Q Consensus 544 LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~-~~didl~~lA~~t~G~ 622 (884)
|+..++. ...++++|++|+.+..+++++.+ |+. .+.|.+|+.++...+++..+...+. .++..+..++..+.|
T Consensus 137 LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G- 210 (472)
T PRK14962 137 LLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG- 210 (472)
T ss_pred HHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-
Confidence 8888874 34567777777777889999998 664 8999999999999999988765433 233446778877765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 623 s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
..+.+.+++..+... .+ ..||.+++..++.
T Consensus 211 dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 211 GLRDALTMLEQVWKF---SE-GKITLETVHEALG 240 (472)
T ss_pred CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHc
Confidence 334444555544322 22 2499999998864
No 75
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.39 E-value=4.6e-12 Score=136.82 Aligned_cols=213 Identities=25% Similarity=0.406 Sum_probs=139.8
Q ss_pred ccccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc---eeeeec
Q 002754 408 YLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISA 484 (884)
Q Consensus 408 ~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~---~~~is~ 484 (884)
..+..++..+++..|....+- .+.++..+-... .+ .+++|+|||||||||||+.|+.....+ |++++.
T Consensus 128 LaermRPktL~dyvGQ~hlv~-q~gllrs~ieq~-------~i-pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 128 LAERMRPKTLDDYVGQSHLVG-QDGLLRSLIEQN-------RI-PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred hhhhcCcchHHHhcchhhhcC-cchHHHHHHHcC-------CC-CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 334445667777777655443 244444332221 11 248999999999999999999987665 444443
Q ss_pred chhhhhhccccchhhhhHHHHHHh-----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEE
Q 002754 485 SQFVEIYVGVGASRVRSLYQEAKD-----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 559 (884)
Q Consensus 485 s~~~~~~~g~~~~~l~~lf~~a~~-----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlV 559 (884)
.. .....++.+|+.+.+ ....|+|||||+.|... ....||-.++ ++.+++
T Consensus 199 t~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks--------------QQD~fLP~VE----~G~I~l 253 (554)
T KOG2028|consen 199 TN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS--------------QQDTFLPHVE----NGDITL 253 (554)
T ss_pred cc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh--------------hhhcccceec----cCceEE
Confidence 22 223446778887764 33569999999998654 3445554433 577888
Q ss_pred Eecc--CCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccC--------CCC------CcccHHHHHhhCCCCC
Q 002754 560 IAST--NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--------PMA------DDVDYLAVASMTDGMV 623 (884)
Q Consensus 560 IatT--N~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~--------~~~------~didl~~lA~~t~G~s 623 (884)
|++| |..-.+..+|+++|| ++.+...+.+....|+..-+... ++. ++.-++.++..+.|-.
T Consensus 254 IGATTENPSFqln~aLlSRC~---VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLSRCR---VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred EecccCCCccchhHHHHhccc---eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 8665 666689999999665 67778888888888888644311 111 2333678899999988
Q ss_pred HHHHHHHHHHH-HHHHHHhC---CCccCHHHHHHHHHHH
Q 002754 624 GAELANIVEVA-AINMMRDG---RTEITTDDLLQAAQIE 658 (884)
Q Consensus 624 ~adL~~Lv~~A-~~~A~~~~---~~~It~edi~~Al~~~ 658 (884)
.+.|.. ++.+ .....+.+ +..++.+|+.+++++.
T Consensus 331 R~aLN~-Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 331 RAALNA-LEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHH-HHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 888743 3433 33333443 3579999999998754
No 76
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=3.2e-12 Score=151.69 Aligned_cols=210 Identities=19% Similarity=0.227 Sum_probs=141.9
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhcccee--eeecc---
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF--SISAS--- 485 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~--~is~s--- 485 (884)
+.+...|+++.|.+.++..+.+.+. +-+++..+||+||+||||||++++||..++.... ...|+
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 3467789999998888876666543 1234566899999999999999999998754211 00110
Q ss_pred ---hh-----hhhh-c----cccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhh
Q 002754 486 ---QF-----VEIY-V----GVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (884)
Q Consensus 486 ---~~-----~~~~-~----g~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~l 548 (884)
.+ .+.+ + ..+...++.+++.+.. ....|++|||+|.+... .+|.||..|
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~--------------A~NALLKtL 143 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH--------------AFNAMLKTL 143 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH--------------HHHHHHHHH
Confidence 00 0000 0 0112234555555432 23569999999998644 678899888
Q ss_pred ccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHH
Q 002754 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (884)
Q Consensus 549 d~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL 627 (884)
+ ....++.||.+||.++.|.+.+++ |+ ..+.|..++.++...+|+..+...++. ++..+..|+..+.|-. ++.
T Consensus 144 E--EPP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm-RdA 217 (830)
T PRK07003 144 E--EPPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM-RDA 217 (830)
T ss_pred H--hcCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHH
Confidence 8 345688999999999999999999 65 489999999999999998887655443 3344677788887754 555
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 628 ANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 628 ~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
.+++.++... +...|+.+++...+
T Consensus 218 LsLLdQAia~----~~~~It~~~V~~~L 241 (830)
T PRK07003 218 LSLTDQAIAY----SANEVTETAVSGML 241 (830)
T ss_pred HHHHHHHHHh----ccCCcCHHHHHHHh
Confidence 5776666532 22357777665543
No 77
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6e-12 Score=142.50 Aligned_cols=210 Identities=19% Similarity=0.222 Sum_probs=140.2
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeee--------e
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI--------S 483 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~i--------s 483 (884)
..+..|+++.|.+..+..+.+.+.. -++|..++|+||+|+||||+|+++|..+....... +
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3567889999988888766655431 13456689999999999999999999875321100 0
Q ss_pred cchhh-----hhh-cc----ccchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhc
Q 002754 484 ASQFV-----EIY-VG----VGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (884)
Q Consensus 484 ~s~~~-----~~~-~g----~~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld 549 (884)
|.++. +.+ +. .....++.+.+.+... ...|++|||++.+... .++.|+..++
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~--------------a~naLLk~lE 144 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH--------------SFNALLKTLE 144 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH--------------HHHHHHHHHh
Confidence 11100 000 00 1112244455444322 2459999999987543 6778888888
Q ss_pred cccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCC-CCcccHHHHHhhCCCCCHHHHH
Q 002754 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELA 628 (884)
Q Consensus 550 ~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~-~~didl~~lA~~t~G~s~adL~ 628 (884)
. ...++.+|.+|+.++.+.+.+.+ |+ ..+.|++|+.++...++...+...+. .++..+..++..+.| +++++.
T Consensus 145 e--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al 218 (363)
T PRK14961 145 E--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDAL 218 (363)
T ss_pred c--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 44567777777778889989988 66 47899999999999999988766543 233446667777765 566676
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 629 NIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 629 ~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
++++.+... +...||.+++.+++.
T Consensus 219 ~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 219 NLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 777766532 456799998887753
No 78
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=5.1e-12 Score=148.75 Aligned_cols=203 Identities=19% Similarity=0.252 Sum_probs=141.9
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc-------------
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 478 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~------------- 478 (884)
.++..|+++.|.+.++..+.+.+. +.+++..+||+||+|+||||+|+++|..++..
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 467789999998888776666554 12445668999999999999999999987542
Q ss_pred -----------eeeeecchhhhhhccccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHH
Q 002754 479 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (884)
Q Consensus 479 -----------~~~is~s~~~~~~~g~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~ 543 (884)
++.++.+. ......++.+.+.+.. ..+.|++|||++.+... .++.
T Consensus 78 C~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~--------------A~NA 137 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH--------------SFNA 137 (702)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH--------------HHHH
Confidence 11121111 0112234555554432 34569999999988644 6788
Q ss_pred HHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCC
Q 002754 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (884)
Q Consensus 544 LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~ 622 (884)
|+..|+. ...++.||.+|+.+..+++.+++ |+. ++.|.+++.++....++..+...+.. ++..+..++..+.|
T Consensus 138 LLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G- 211 (702)
T PRK14960 138 LLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG- 211 (702)
T ss_pred HHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888884 44667788778888888888887 664 89999999999999998888665443 33446677777765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 623 s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
+.+++.+++..+... +...||.+++...+
T Consensus 212 dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 212 SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 666777777766532 45569988887754
No 79
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=1e-12 Score=152.18 Aligned_cols=275 Identities=13% Similarity=0.151 Sum_probs=165.4
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh-----ccceeeeecchhhhhhccccc---hhhhhHHHHHHhcCCcEEEhhhHHHhh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGA---SRVRSLYQEAKDNAPSVVFIDELDAVG 523 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~---~~l~~lf~~a~~~~p~Il~iDEId~l~ 523 (884)
.+++|+|++|+|||+|+++++..+ +..++++++.++...+..... ..+..+.+.. ..+++++|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 358999999999999999999855 356778888777665442211 1111121222 346799999998774
Q ss_pred hhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCC---CCCccCCCCCccc--ccccCCCCChhhHHHHHH
Q 002754 524 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRFD--RKIFIPKPGLIGRMEILK 598 (884)
Q Consensus 524 ~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~---~LdpaLlr~gRfd--~~I~~~~P~~eeR~~Il~ 598 (884)
.. +. ....|+..++........+||.+...|. .+++.|.+ ||. .++.+.+|+.++|..|++
T Consensus 220 ~k---------~~---~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 220 YK---------EK---TNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CC---------HH---HHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 32 11 2333433344333444445555555554 35678877 774 677899999999999999
Q ss_pred HHHccCCC---CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC-CCccCHHHHHHHHHHHHcCCccccccchhhhH
Q 002754 599 VHARKKPM---ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-RTEITTDDLLQAAQIEERGMLDRKERSSETWR 674 (884)
Q Consensus 599 ~~l~~~~~---~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~-~~~It~edi~~Al~~~~~g~~~~~~~~~~~~~ 674 (884)
..+...++ .++.-+..|+..+.| +.+.+..+++.+...+.... ...||.+.+.+++...... . .+
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~~--~--------~~ 354 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPTS--K--------LG 354 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcccc--c--------cC
Confidence 99876542 233335667777665 67888899988876665542 2579999999998754211 0 11
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcceeeecCCCCCcccceeeccccccccccccCHHHHHHHHHHhhhhhhHHHHHcCCCcc
Q 002754 675 QVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQL 754 (884)
Q Consensus 675 ~vA~hEaGhAvva~ll~~~~~v~~vsI~pr~g~~lG~~~~~~~e~~~~~~~~Tr~~l~~~I~v~LaGRAAEel~fG~~~~ 754 (884)
.+.+..+-++|..++--....+..-+-......+.-..+|...+ +|... +..|+..+|||-+-.|+++...+
T Consensus 355 ~~t~~~I~~~Va~~~~i~~~dl~s~~R~~~i~~~RqiamyL~r~-------~t~~s-l~~IG~~FggrdHsTV~~a~~ki 426 (450)
T PRK14087 355 ILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLTKE-------ILNHT-LAQIGEEFGGRDHTTVINAERKI 426 (450)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHhCCCCCccccHHHHHHHHHHHH-------HcCCC-HHHHHHHhCCCChHHHHHHHHHH
Confidence 24455566666665533222221111100001122333444333 12222 56699999999999999987444
Q ss_pred cccccch
Q 002754 755 STIWAET 761 (884)
Q Consensus 755 stga~~D 761 (884)
...-..|
T Consensus 427 ~~~~~~d 433 (450)
T PRK14087 427 EKMLKKD 433 (450)
T ss_pred HHHHHhC
Confidence 4433333
No 80
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=7.4e-12 Score=146.17 Aligned_cols=213 Identities=19% Similarity=0.270 Sum_probs=147.2
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeee--------
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI-------- 482 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~i-------- 482 (884)
+..+..|.++.|....+..+.+.+.. -+++.+++|+||+||||||+|+++|..++......
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 34677889999988888766654431 24567799999999999999999999875422100
Q ss_pred ----ecchhhhh------hc----cccchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHH
Q 002754 483 ----SASQFVEI------YV----GVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQL 544 (884)
Q Consensus 483 ----s~s~~~~~------~~----g~~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~L 544 (884)
+|..+... .+ ..+...++.+++.+... ...|++|||++.+... .++.|
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~--------------a~naL 148 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG--------------AFNAL 148 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH--------------HHHHH
Confidence 11111100 00 01223456666665432 3469999999887543 67888
Q ss_pred HHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCC
Q 002754 545 LVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMV 623 (884)
Q Consensus 545 L~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s 623 (884)
+..++ ....++++|.+|+.++.+++.+.+ |+ ..+.|.+++.++...+++..+...+.. ++..+..++..+.| +
T Consensus 149 Lk~LE--epp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-s 222 (507)
T PRK06645 149 LKTLE--EPPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-S 222 (507)
T ss_pred HHHHh--hcCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88888 345677888778888889999988 65 378899999999999999988765543 23346778887766 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 624 GAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 624 ~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
.+++.++++.+...+... ...||.+++...+
T Consensus 223 lR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 223 ARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred HHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 788888888876554211 2368998888765
No 81
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.36 E-value=2e-11 Score=140.51 Aligned_cols=200 Identities=27% Similarity=0.385 Sum_probs=134.7
Q ss_pred cccccccccCchhHHHH---HHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh
Q 002754 413 VDVKFSDVAGLGKIRLE---LEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~---l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
++..|++..|....+.. +..++. . ..+.+++|+|||||||||||++|+..++.++..++....
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~---~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIE---A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHH---c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 44567777777666544 333332 1 112368999999999999999999999999988876532
Q ss_pred hhccccchhhhhHHHHHH----hcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEecc--
Q 002754 490 IYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST-- 563 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~----~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatT-- 563 (884)
+...++.+++.+. .....++||||++.+... ..+.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~--------------~q~~LL~~le~----~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA--------------QQDALLPHVED----GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH--------------HHHHHHHHhhc----CcEEEEEeCCC
Confidence 1223445555543 224679999999988543 44566665552 456666544
Q ss_pred CCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccC--CC--CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 002754 564 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--PM--ADDVDYLAVASMTDGMVGAELANIVEVAAINMM 639 (884)
Q Consensus 564 N~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~--~~--~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~ 639 (884)
|....+++++++ |+ ..+.|++|+.++...+++..+... .. .++..+..++..+.| ..+.+.+++..+...
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~-- 203 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG-- 203 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--
Confidence 445578999998 77 588999999999999999876542 11 123335667777754 455555666665532
Q ss_pred HhCCCccCHHHHHHHHHHH
Q 002754 640 RDGRTEITTDDLLQAAQIE 658 (884)
Q Consensus 640 ~~~~~~It~edi~~Al~~~ 658 (884)
...|+.+++..++...
T Consensus 204 ---~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 204 ---VDSITLELLEEALQKR 219 (413)
T ss_pred ---cCCCCHHHHHHHHhhh
Confidence 4579999999998754
No 82
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.36 E-value=1.9e-11 Score=138.15 Aligned_cols=194 Identities=24% Similarity=0.295 Sum_probs=127.9
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhhc---------cceeeeecchhhhh----------hc--ccc--------chhhhh
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEAG---------VNFFSISASQFVEI----------YV--GVG--------ASRVRS 501 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el~---------~~~~~is~s~~~~~----------~~--g~~--------~~~l~~ 501 (884)
+++++|+||||||||++++.++..+. ..++.+++...... .. |.. ...+..
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 119 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRR 119 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHH
Confidence 45699999999999999999998653 46777777543221 10 110 011233
Q ss_pred HHHHHH-hcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcc-ccCCCceEEEeccCCCC---CCCccCCCC
Q 002754 502 LYQEAK-DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-FEGRGNVITIASTNRPD---ILDPALVRP 576 (884)
Q Consensus 502 lf~~a~-~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~-~~~~~~VlVIatTN~~~---~LdpaLlr~ 576 (884)
++..+. ...+.|++|||+|.+.... ...+..|+...+. .....++.+|+++|.++ .+++.+.+
T Consensus 120 l~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s- 187 (365)
T TIGR02928 120 LYKELNERGDSLIIVLDEIDYLVGDD-----------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS- 187 (365)
T ss_pred HHHHHHhcCCeEEEEECchhhhccCC-----------cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc-
Confidence 444443 2346789999999996221 1145555543211 12336788899998876 47777776
Q ss_pred Cccc-ccccCCCCChhhHHHHHHHHHccC----CCCCcc-c-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 002754 577 GRFD-RKIFIPKPGLIGRMEILKVHARKK----PMADDV-D-YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 577 gRfd-~~I~~~~P~~eeR~~Il~~~l~~~----~~~~di-d-l~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~e 649 (884)
||. ..|.|++|+.++..+|++.++... .+.++. + +..++..+.|.... +.++|+.|...|..++...||.+
T Consensus 188 -~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~-al~~l~~a~~~a~~~~~~~it~~ 265 (365)
T TIGR02928 188 -SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK-AIDLLRVAGEIAEREGAERVTED 265 (365)
T ss_pred -cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHcCCCCCCHH
Confidence 664 679999999999999999888521 122211 1 23344555565444 45788899988888888899999
Q ss_pred HHHHHHHHH
Q 002754 650 DLLQAAQIE 658 (884)
Q Consensus 650 di~~Al~~~ 658 (884)
|+..|+...
T Consensus 266 ~v~~a~~~~ 274 (365)
T TIGR02928 266 HVEKAQEKI 274 (365)
T ss_pred HHHHHHHHH
Confidence 999998866
No 83
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=2.6e-12 Score=148.67 Aligned_cols=213 Identities=16% Similarity=0.187 Sum_probs=137.2
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh-----ccceeeeecchhhhhhcccc-chhhhhHHHHHHhcCCcEEEhhhHHHhhhh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVG-ASRVRSLYQEAKDNAPSVVFIDELDAVGRE 525 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~-~~~l~~lf~~a~~~~p~Il~iDEId~l~~~ 525 (884)
.+++|+||+|+|||+|++++++++ +..+.++++.++...+.... ...+..+.+.. ...+++++|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~-~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY-RKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHH-HhcCCEEEEechhhhcCc
Confidence 349999999999999999999976 34677888877765543221 11122222222 235789999999987533
Q ss_pred cCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCC---CCccCCCCCcc--cccccCCCCChhhHHHHHHHH
Q 002754 526 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRF--DRKIFIPKPGLIGRMEILKVH 600 (884)
Q Consensus 526 r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~---LdpaLlr~gRf--d~~I~~~~P~~eeR~~Il~~~ 600 (884)
. . ....|+..++.+......+||++.+.|.. +.+.+.+ || +..+.|.+|+.+.|..|++..
T Consensus 210 ~---------~---~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 210 T---------G---VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred H---------H---HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 1 0 12233333343334445566666666654 4567777 66 457789999999999999988
Q ss_pred HccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCCccccccchhhhHHHHHH
Q 002754 601 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAIN 679 (884)
Q Consensus 601 l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~g~~~~~~~~~~~~~~vA~h 679 (884)
+...++. ++..+..|+....| +.++|..+++.....+...++ .||.+.+.+++...... . .....+.++
T Consensus 276 ~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~~-~it~~~a~~~L~~~~~~-~-------~~~~~i~~~ 345 (440)
T PRK14088 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTGE-EVDLKEAILLLKDFIKP-N-------RVKAMDPID 345 (440)
T ss_pred HHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhcc-c-------cccCCCCHH
Confidence 8654332 23336667777654 678888888887766666554 69999999998765322 0 111224555
Q ss_pred HHHHHHHHHh
Q 002754 680 EAAMAVVAVN 689 (884)
Q Consensus 680 EaGhAvva~l 689 (884)
++-.+|..++
T Consensus 346 ~I~~~V~~~~ 355 (440)
T PRK14088 346 ELIEIVAKVT 355 (440)
T ss_pred HHHHHHHHHc
Confidence 5666665554
No 84
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=3.6e-12 Score=147.32 Aligned_cols=269 Identities=16% Similarity=0.131 Sum_probs=155.2
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCC
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~ 528 (884)
.+++|+||+|+|||+|++++++.+ +..+++++...+...+.......-...|.... ..+++++|||++.+.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh--
Confidence 458999999999999999999876 56778888776655433211111111233222 346799999998874321
Q ss_pred CCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCC---CCCccCCCCCccc--ccccCCCCChhhHHHHHHHHHcc
Q 002754 529 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARK 603 (884)
Q Consensus 529 ~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~---~LdpaLlr~gRfd--~~I~~~~P~~eeR~~Il~~~l~~ 603 (884)
. ....++..++.+...+..+|+++++.|. .+++.|.+ ||. ..+.+++|+.++|..|++..+..
T Consensus 219 -------~---~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 219 -------A---TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred -------h---hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 1 1222333333222334456666655554 46788888 884 78899999999999999988876
Q ss_pred CCCCC-cccHHHHHhhCCCCCHHHHHHHHHHHH---HHHHHhCCCccCHHHHHHHHHHHHcCCccccccchhhhHHHHHH
Q 002754 604 KPMAD-DVDYLAVASMTDGMVGAELANIVEVAA---INMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAIN 679 (884)
Q Consensus 604 ~~~~~-didl~~lA~~t~G~s~adL~~Lv~~A~---~~A~~~~~~~It~edi~~Al~~~~~g~~~~~~~~~~~~~~vA~h 679 (884)
.++.- +..+..++....+ ..+.|..+++..+ ..+...+ ..||.+.+.+++...... ..+. .+.+-
T Consensus 287 ~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~-~~i~~~~~~~~l~~~~~~-~~~~--------~~t~~ 355 (445)
T PRK12422 287 LSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSH-QLLYVDDIKALLHDVLEA-AESV--------RLTPS 355 (445)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhhc-ccCC--------CCCHH
Confidence 65432 2234556665553 4566777777664 2222233 469999999998765322 1111 12333
Q ss_pred HHHHHHHHHhCCCCCCcceeeecCCCCCcccceeeccccccccccccCHHHHHHHHHHhhhhhhHHHHHcCCCccc
Q 002754 680 EAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLS 755 (884)
Q Consensus 680 EaGhAvva~ll~~~~~v~~vsI~pr~g~~lG~~~~~~~e~~~~~~~~Tr~~l~~~I~v~LaGRAAEel~fG~~~~s 755 (884)
.+-.+|..++--....+..-+-......+....+|...+ +|... +..|+..|| |-+-.++++...+.
T Consensus 356 ~I~~~Va~~~~v~~~dl~s~~R~~~i~~~Rqiamyl~r~-------~t~~s-~~~IG~~fg-rdHsTV~~a~~ki~ 422 (445)
T PRK12422 356 KIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQ-------KLSLS-YVKIGDVFS-RDHSTVISSIRAIS 422 (445)
T ss_pred HHHHHHHHHhCCCHHHHhcCCCCcccccHHHHHHHHHHH-------hcCCC-HHHHHHHhC-CChHHHHHHHHHHH
Confidence 444555554432222221111111111122333444333 12222 556999997 99999998874444
No 85
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=6.6e-12 Score=147.36 Aligned_cols=204 Identities=16% Similarity=0.218 Sum_probs=143.8
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc------------
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (884)
+.++..|+++.|...++..+.+.+.. -.++..+||+||+|+||||+|+++|..+...
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 34677899999999888777766542 2345668999999999999999999987542
Q ss_pred ------------eeeeecchhhhhhccccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHH
Q 002754 479 ------------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (884)
Q Consensus 479 ------------~~~is~s~~~~~~~g~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~ 542 (884)
+++++.+. ..+...++.+.+.+.. ....|++|||+|.+... .++
T Consensus 78 ~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~--------------a~n 137 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH--------------SFN 137 (509)
T ss_pred HHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH--------------HHH
Confidence 12222111 1112234555555432 33569999999998654 688
Q ss_pred HHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCC
Q 002754 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 621 (884)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G 621 (884)
.|+..|+. ...++.||.+|+.+..+.+.+++ |+ ..+.|.+++.++....++..+...+.. ++..+..++..+.|
T Consensus 138 aLLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G 212 (509)
T PRK14958 138 ALLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG 212 (509)
T ss_pred HHHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 89998884 45677888777888888888988 55 378899999998888888777665443 33346677777654
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 622 ~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
+.+++.+++..+... +...||.+++...+
T Consensus 213 -slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 213 -SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred -cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 677888888776532 34569998888765
No 86
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=3.8e-12 Score=149.76 Aligned_cols=189 Identities=15% Similarity=0.194 Sum_probs=126.1
Q ss_pred EEEECCCCCCchhHHHHhhhhh-----ccceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCC
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~ 528 (884)
++|+|++|+|||+|+.+|++.+ +..+.++++.++...+...........|... -..+++|+||+|+.+....
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke-- 393 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE-- 393 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH--
Confidence 8999999999999999999976 4567888888877665432211111123221 2346899999999875431
Q ss_pred CCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCC---CCCccCCCCCcc--cccccCCCCChhhHHHHHHHHHcc
Q 002754 529 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARK 603 (884)
Q Consensus 529 ~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~---~LdpaLlr~gRf--d~~I~~~~P~~eeR~~Il~~~l~~ 603 (884)
.. ...|+..++.+...+..+||++...+. .+++.|.+ || ..++.+..|+.+.|..||+..+..
T Consensus 394 -------~t---qeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 394 -------ST---QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred -------HH---HHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 11 122333333333334445554443343 56788888 77 566789999999999999998877
Q ss_pred CCCCCc-ccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 002754 604 KPMADD-VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 659 (884)
Q Consensus 604 ~~~~~d-idl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~ 659 (884)
.++.-. .-+..|+.... -+.+.|..+++.....+...+ ..||.+.+..+++.+.
T Consensus 462 r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~ 516 (617)
T PRK14086 462 EQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLI 516 (617)
T ss_pred cCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 655433 33566666654 367888888888776666555 4699999998887553
No 87
>PRK04195 replication factor C large subunit; Provisional
Probab=99.33 E-value=1.6e-11 Score=144.11 Aligned_cols=210 Identities=23% Similarity=0.327 Sum_probs=142.0
Q ss_pred cccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhh
Q 002754 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (884)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 488 (884)
.++..+..|+++.|....+..+...+..+... ..+++++|+||||+||||++++||.+++.+++.++.++..
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g--------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLKG--------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 34556778889999998888888777654321 2256799999999999999999999999999999887643
Q ss_pred hhhccccchhhhhHHHHHHh------cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEec
Q 002754 489 EIYVGVGASRVRSLYQEAKD------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS 562 (884)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~------~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIat 562 (884)
.. ..+..+...+.. ..+.+|+|||+|.+.... .+..+..|+..++ ..+..||++
T Consensus 77 ~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~----~~~~~iIli 136 (482)
T PRK04195 77 TA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIK----KAKQPIILT 136 (482)
T ss_pred cH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHH----cCCCCEEEe
Confidence 21 111222222111 246799999999875421 0113455555555 233456667
Q ss_pred cCCCCCCCc-cCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 002754 563 TNRPDILDP-ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMR 640 (884)
Q Consensus 563 TN~~~~Ldp-aLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~ 640 (884)
+|.+..+++ .+.+ |+ ..|.|++|+..++..+++..+...++. ++..+..|+..+.| |++.+++.... ..
T Consensus 137 ~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~--~a 207 (482)
T PRK04195 137 ANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQA--IA 207 (482)
T ss_pred ccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH--Hh
Confidence 888887776 5655 33 489999999999999999888655442 33446777777654 66667665554 23
Q ss_pred hCCCccCHHHHHHHH
Q 002754 641 DGRTEITTDDLLQAA 655 (884)
Q Consensus 641 ~~~~~It~edi~~Al 655 (884)
.+...|+.+++....
T Consensus 208 ~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 EGYGKLTLEDVKTLG 222 (482)
T ss_pred cCCCCCcHHHHHHhh
Confidence 455678998887653
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=1.7e-11 Score=146.12 Aligned_cols=208 Identities=20% Similarity=0.280 Sum_probs=139.3
Q ss_pred cccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceee--eecc-----
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISAS----- 485 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~--is~s----- 485 (884)
....|+++.|.+.++..+.+.+.. -+++..+||+||+|+||||+++++|..++...+. ..|+
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 567899999988888766655442 1345568999999999999999999987553110 0010
Q ss_pred -hhh-----hhh-cc----ccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcc
Q 002754 486 -QFV-----EIY-VG----VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 550 (884)
Q Consensus 486 -~~~-----~~~-~g----~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~ 550 (884)
.+. +.+ +. .....++.+.+.+.. ....|++|||+|.+... .++.||..|+
T Consensus 80 ~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~--------------a~NALLKtLE- 144 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH--------------SFNALLKTLE- 144 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH--------------HHHHHHHHHH-
Confidence 000 000 00 111234555555432 34569999999998654 7899999998
Q ss_pred ccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHH
Q 002754 551 FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELAN 629 (884)
Q Consensus 551 ~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~ 629 (884)
....+++||.+|+.+..|.+.+++ |+ ..+.|.+++.++....+...+...++. ++..+..++..+.| +.++..+
T Consensus 145 -EPp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~ 219 (647)
T PRK07994 145 -EPPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDALS 219 (647)
T ss_pred -cCCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 455678888788888999999998 65 589999999999999998887654432 33446677777766 4555557
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 630 IVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 630 Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
++..|... +...|+.+++...+
T Consensus 220 lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 220 LTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHh----cCCCcCHHHHHHHH
Confidence 77665422 23347776666544
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=1.8e-11 Score=141.93 Aligned_cols=203 Identities=21% Similarity=0.249 Sum_probs=144.1
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc-------------
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 478 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~------------- 478 (884)
.++..|+++.|.+..+..+.++... -++|.++||+||+|+||||+|+.+|..+...
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 4567899999988887666654431 2456779999999999999999999865321
Q ss_pred -----------eeeeecchhhhhhccccchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHH
Q 002754 479 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (884)
Q Consensus 479 -----------~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~ 543 (884)
++.++.++ ..+...++.+.+.+... .+.|++|||++.+... .++.
T Consensus 76 C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~--------------A~Na 135 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS--------------AFNA 135 (491)
T ss_pred HHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHH--------------HHHH
Confidence 22222221 11223456666665432 3569999999887543 7889
Q ss_pred HHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCC
Q 002754 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (884)
Q Consensus 544 LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~ 622 (884)
|+..|+. ...++++|.+|+.++.+.+.+++ |+. .+.|.+++.++....+...+...+.. ++..+..++..+.|
T Consensus 136 LLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G- 209 (491)
T PRK14964 136 LLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG- 209 (491)
T ss_pred HHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9999984 45678888778888889999988 553 78999999999999999887665443 33446677777754
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 623 s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
+.+++.+++..+.... ...||.+++...+
T Consensus 210 slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 210 SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 7777778887776432 2469999988764
No 90
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.31 E-value=2.5e-11 Score=138.70 Aligned_cols=195 Identities=22% Similarity=0.297 Sum_probs=128.6
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhh-----ccceeeeecchhhhh----------hccc----cchhh----hhHHHHHH
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEI----------YVGV----GASRV----RSLYQEAK 507 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~----------~~g~----~~~~l----~~lf~~a~ 507 (884)
+.+++|+||||+|||++++.++..+ +..++++++...... ..+. ..... ..+.+.+.
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4558999999999999999999876 466788887543221 1110 00011 22223332
Q ss_pred h-cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCC---CCCccCCCCCcc-ccc
Q 002754 508 D-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF-DRK 582 (884)
Q Consensus 508 ~-~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~---~LdpaLlr~gRf-d~~ 582 (884)
. ..+.||+|||+|.+..... ...+..|+..++... ..++.+|+++|..+ .+++.+.+ || ...
T Consensus 135 ~~~~~~viviDE~d~l~~~~~----------~~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~ 201 (394)
T PRK00411 135 ERDRVLIVALDDINYLFEKEG----------NDVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEE 201 (394)
T ss_pred hcCCEEEEEECCHhHhhccCC----------chHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcce
Confidence 2 3457899999999862110 125666665555432 34788888887654 46676665 55 357
Q ss_pred ccCCCCChhhHHHHHHHHHccCC---CCCcccHHHHHhhCCCC--CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 002754 583 IFIPKPGLIGRMEILKVHARKKP---MADDVDYLAVASMTDGM--VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (884)
Q Consensus 583 I~~~~P~~eeR~~Il~~~l~~~~---~~~didl~~lA~~t~G~--s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~ 657 (884)
|.|++|+.++..+|++.++.... ..++..+..++..+.+. ..+.+..++..|...|..++...|+.+|+..|+..
T Consensus 202 i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 202 IYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEK 281 (394)
T ss_pred eecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 89999999999999998885421 12233355566655321 23445588888888888888889999999999987
Q ss_pred H
Q 002754 658 E 658 (884)
Q Consensus 658 ~ 658 (884)
.
T Consensus 282 ~ 282 (394)
T PRK00411 282 S 282 (394)
T ss_pred H
Confidence 6
No 91
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.31 E-value=1.6e-10 Score=138.77 Aligned_cols=215 Identities=26% Similarity=0.310 Sum_probs=128.3
Q ss_pred cccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh----------ccceeee
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSI 482 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~i 482 (884)
....|+++.|....+..+...+ .. ..+..++|+|||||||||+|+++++.. +.+|+.+
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~i---a~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKV---AS---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHH---hc---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 4567778888777665443222 11 123459999999999999999998755 3467888
Q ss_pred ecchhh-------hhhccccchhh----hhHHH----------HHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHH
Q 002754 483 SASQFV-------EIYVGVGASRV----RSLYQ----------EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATL 541 (884)
Q Consensus 483 s~s~~~-------~~~~g~~~~~l----~~lf~----------~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l 541 (884)
++..+. ...+|...... ...+. .......+++||||++.+... ..
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--------------~Q 282 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--------------LQ 282 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------------HH
Confidence 876531 11122111000 00000 011223569999999877543 33
Q ss_pred HHHHHhhccc--------------------------cCCCceEEE-eccCCCCCCCccCCCCCcccccccCCCCChhhHH
Q 002754 542 NQLLVCLDGF--------------------------EGRGNVITI-ASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM 594 (884)
Q Consensus 542 ~~LL~~ld~~--------------------------~~~~~VlVI-atTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~ 594 (884)
..|+..++.. ....++++| +||+.++.++++|++ ||. .+.|++++.+++.
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 4444444321 012335555 456778889999988 887 6789999999999
Q ss_pred HHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHh--------CCCccCHHHHHHHHHHH
Q 002754 595 EILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD--------GRTEITTDDLLQAAQIE 658 (884)
Q Consensus 595 ~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~--------~~~~It~edi~~Al~~~ 658 (884)
.|++..+...... ++.-+..++..+. .++...+++..+...+..+ +...|+.+|+.+++...
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 9999988765432 2223455555543 3444445555554443211 23369999999997643
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=2.5e-11 Score=144.38 Aligned_cols=209 Identities=17% Similarity=0.201 Sum_probs=141.1
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc------------e
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------F 479 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~------------~ 479 (884)
.+...|+++.|.+.++..+.+++.. .+++..+||+||+|+||||+++++|+.+... .
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 3567899999988887666665542 2345668999999999999999999877531 0
Q ss_pred eee-ecchh-----hhh-hc----cccchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHH
Q 002754 480 FSI-SASQF-----VEI-YV----GVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQL 544 (884)
Q Consensus 480 ~~i-s~s~~-----~~~-~~----g~~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~L 544 (884)
+.+ +|..+ .+. .+ ..+...++.+.+.+... ...|++|||+|.+... .++.|
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~--------------a~NaL 144 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT--------------AFNAM 144 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH--------------HHHHH
Confidence 111 01100 000 00 01112345565554432 2469999999998654 68889
Q ss_pred HHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCC
Q 002754 545 LVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMV 623 (884)
Q Consensus 545 L~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s 623 (884)
+..|+. ...+++||.+|+.+..+.+.+++ |+ .++.|..++.++....++..+...++. ++..+..++..+.| +
T Consensus 145 LKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-s 218 (618)
T PRK14951 145 LKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-S 218 (618)
T ss_pred HHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 988884 45677788777788888888888 55 489999999999999998887665543 23346777777765 6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 624 GAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 624 ~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
.+++.+++..+... +...||.+++...+
T Consensus 219 lR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 219 MRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 67777777666533 34468888777654
No 93
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.30 E-value=3.4e-11 Score=137.73 Aligned_cols=186 Identities=25% Similarity=0.307 Sum_probs=116.0
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh-hhccccchhh-hhHHHH----HHhcCCcEEEhhhHHHhhhh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGASRV-RSLYQE----AKDNAPSVVFIDELDAVGRE 525 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~-~~~g~~~~~l-~~lf~~----a~~~~p~Il~iDEId~l~~~ 525 (884)
.++||+||||||||++|++||..++.+|+.++++.+.. .|+|.....+ ..+++. +....++|+||||||.+...
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK 188 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc
Confidence 45999999999999999999999999999999988654 4777654432 333332 22346789999999999765
Q ss_pred cCCCCCCCchhHHHHHHHHHHhhcccc-----------CCCceEEEeccCCCC---------------------------
Q 002754 526 RGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD--------------------------- 567 (884)
Q Consensus 526 r~~~~~Sgge~~~~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~~--------------------------- 567 (884)
....+...+-....+++.||..|++.. ...++++|.|+|...
T Consensus 189 ~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~ 268 (412)
T PRK05342 189 SENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAE 268 (412)
T ss_pred cCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccc
Confidence 221111001111236677777777521 112345555555410
Q ss_pred -------------------------CCCccCCCCCcccccccCCCCChhhHHHHHHH----HHc-------cCCCC---C
Q 002754 568 -------------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKV----HAR-------KKPMA---D 608 (884)
Q Consensus 568 -------------------------~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~----~l~-------~~~~~---~ 608 (884)
.+.|+|+. |+|.++.|.+.+.++..+|+.. .++ ..++. +
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t 346 (412)
T PRK05342 269 VKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFT 346 (412)
T ss_pred cccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEC
Confidence 03566766 9999999999999999999973 221 11221 1
Q ss_pred cccHHHHHhh--CCCCCHHHHHHHHHHHHHHHH
Q 002754 609 DVDYLAVASM--TDGMVGAELANIVEVAAINMM 639 (884)
Q Consensus 609 didl~~lA~~--t~G~s~adL~~Lv~~A~~~A~ 639 (884)
+.-+..|+.. ..++-.+.|+.+++....-..
T Consensus 347 ~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~ 379 (412)
T PRK05342 347 DEALEAIAKKAIERKTGARGLRSILEEILLDVM 379 (412)
T ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHH
Confidence 1223445543 444556666666665554433
No 94
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=2.1e-11 Score=144.88 Aligned_cols=211 Identities=18% Similarity=0.250 Sum_probs=144.4
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceee--eecc---
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISAS--- 485 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~--is~s--- 485 (884)
+.+...|+++.|...++..+.+.+.. -+++.++||+||+|+||||+++++|..+...... ..|+
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 34677899999999888777766542 2456679999999999999999999987543210 0011
Q ss_pred --------hhhhhh-c----cccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhh
Q 002754 486 --------QFVEIY-V----GVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (884)
Q Consensus 486 --------~~~~~~-~----g~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~l 548 (884)
.+.+.+ + ..+...++.+++.+.. ....|++|||++.+... .++.||..|
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~--------------A~NALLKtL 143 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS--------------AFNAMLKTL 143 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH--------------HHHHHHHHH
Confidence 011100 0 1112235556655432 23469999999876433 678888888
Q ss_pred ccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHH
Q 002754 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (884)
Q Consensus 549 d~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL 627 (884)
+. ...++.||.+||.+..+.+.+++ |+ ..+.|+.++.++....++..+...++. ++..+..|+..+. -+.+++
T Consensus 144 EE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-GslRdA 217 (709)
T PRK08691 144 EE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSMRDA 217 (709)
T ss_pred Hh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHH
Confidence 84 44677888888888899999887 66 478888999999999999888765543 2334667777765 467777
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 628 ANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 628 ~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
.+++..+... +...|+.+++...+.
T Consensus 218 lnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 218 LSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 7888777643 344688888877653
No 95
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.30 E-value=1.5e-11 Score=139.31 Aligned_cols=240 Identities=17% Similarity=0.188 Sum_probs=164.2
Q ss_pred hhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcChhHHHhh
Q 002754 309 DSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAM 388 (884)
Q Consensus 309 ~~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v 388 (884)
.++.|..+ ...++.+|.|||+.|..-+. +....+.++++.+++++...+..+.......+ ...+++.
T Consensus 285 vCT~Ii~l-~~kkl~~y~Gnydqy~~tr~--E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a----------~~~rka~ 351 (614)
T KOG0927|consen 285 VCTNIIHL-DNKKLIYYEGNYDQYVKTRS--ELEENQMKAYEKQQKQIAHMKDLIARFGHGSA----------KLGRKAQ 351 (614)
T ss_pred Hhhhhhee-cccceeeecCCHHHHhhHHH--HHhHHHHHHHHHHHhHHHHhhHHHHhhcccch----------hhhHHHh
Confidence 46778888 77889999999999998887 77777888888888998888888875542211 1122222
Q ss_pred chhhhHHHHHHHhcCCCCcccccCcccccccccCchhHHHHHHHHHHhhcc-cccccccccccCC--cEEEECCCCCCch
Q 002754 389 QFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTH-GEMYRRRGVRIPG--GILLCGPPGVGKT 465 (884)
Q Consensus 389 ~~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~-~~~~~~~g~~i~~--giLL~GPpGtGKT 465 (884)
+..+..+.... .|.-.....++...+.|+++..++..++...++.+.|.+ +-+|..+++-+.. .+.++||||||||
T Consensus 352 s~~K~~~km~~-~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKs 430 (614)
T KOG0927|consen 352 SKEKTLDKMEA-DGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKS 430 (614)
T ss_pred hhhhhHHHHhh-ccccccccCCceEEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchh
Confidence 22222222211 122223344556788899998888888888888887764 3567766655543 4999999999999
Q ss_pred hHHHHhhhhhccceeeeecchhhhh-hccccchhh----hhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCC---------
Q 002754 466 LLAKAVAGEAGVNFFSISASQFVEI-YVGVGASRV----RSLYQEAKDNAPSVVFIDELDAVGRERGLIKG--------- 531 (884)
Q Consensus 466 tLakaLA~el~~~~~~is~s~~~~~-~~g~~~~~l----~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~--------- 531 (884)
||+|.+.+.+.+..+.++....... ++.+..... ....+.+....|..-=++++..+.+..++.+.
T Consensus 431 TLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~L 510 (614)
T KOG0927|consen 431 TLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQL 510 (614)
T ss_pred hhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhc
Confidence 9999999999998888876654322 222211100 12233333333434567888888877766543
Q ss_pred CCchhHHHHHHHHHHhhccccCCCceEEE-eccCCCCC
Q 002754 532 SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 568 (884)
Q Consensus 532 Sgge~~~~~l~~LL~~ld~~~~~~~VlVI-atTN~~~~ 568 (884)
|+|++.+.+++.++ ...++++++ .+||+.|.
T Consensus 511 S~Gqr~rVlFa~l~------~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 511 SDGQRRRVLFARLA------VKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred ccccchhHHHHHHH------hcCCcEEEecCCCcCCCc
Confidence 89999999999988 667788888 89998774
No 96
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=3.1e-11 Score=143.45 Aligned_cols=203 Identities=25% Similarity=0.325 Sum_probs=143.0
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc-------------
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 478 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~------------- 478 (884)
.++..|+++.|.+.++..+.+.+.. ..++..+||+||+|+|||++|+.+|..+...
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 3577899999988888777766553 1345568999999999999999999876432
Q ss_pred -----------eeeeecchhhhhhccccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHH
Q 002754 479 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (884)
Q Consensus 479 -----------~~~is~s~~~~~~~g~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~ 543 (884)
++.++.+. +.+...++.+.+.+.. ..+.|++|||++.+... .++.
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~--------------a~na 138 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG--------------AFNA 138 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH--------------HHHH
Confidence 11221110 1122335566666543 23569999999887543 7888
Q ss_pred HHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCC
Q 002754 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (884)
Q Consensus 544 LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~ 622 (884)
|+..++. ...++++|.+|+.++.+++.+++ |+. .+.|++|+.++...+++..+...++. ++..+..++..+.|
T Consensus 139 LLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G- 212 (559)
T PRK05563 139 LLKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG- 212 (559)
T ss_pred HHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9988884 45677888777788999999988 665 68899999999999999888765543 33446667777765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 623 s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
+.+++.+++..+... +...||.+++...+
T Consensus 213 ~~R~al~~Ldq~~~~----~~~~It~~~V~~vl 241 (559)
T PRK05563 213 GMRDALSILDQAISF----GDGKVTYEDALEVT 241 (559)
T ss_pred CHHHHHHHHHHHHHh----ccCCCCHHHHHHHh
Confidence 677777777776543 23468888877654
No 97
>PRK06893 DNA replication initiation factor; Validated
Probab=99.29 E-value=3.5e-11 Score=127.67 Aligned_cols=179 Identities=16% Similarity=0.170 Sum_probs=113.4
Q ss_pred cEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCC
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 529 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~ 529 (884)
.++|+||||||||+|+.++|+++ +....+++....... ...+++.+. ..++++|||++.+.+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~~~--~~dlLilDDi~~~~~~~--- 107 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF--------SPAVLENLE--QQDLVCLDDLQAVIGNE--- 107 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh--------hHHHHhhcc--cCCEEEEeChhhhcCCh---
Confidence 47999999999999999999876 334444544321110 012233332 45799999999875331
Q ss_pred CCCCchhHHHHHHHHHHhhccccCCCc-eEEEeccCCCCCCC---ccCCCCCcccccccCCCCChhhHHHHHHHHHccCC
Q 002754 530 KGSGGQERDATLNQLLVCLDGFEGRGN-VITIASTNRPDILD---PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 605 (884)
Q Consensus 530 ~~Sgge~~~~~l~~LL~~ld~~~~~~~-VlVIatTN~~~~Ld---paLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~ 605 (884)
..... |+..++.....++ ++|++++..|..++ |.|.++.+++..+.+++|+.++|..|++..+...+
T Consensus 108 ------~~~~~---l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 ------EWELA---IFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ------HHHHH---HHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 11122 3333333333343 44556666666554 78888556678889999999999999998876544
Q ss_pred CC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 606 MA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 606 ~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
+. ++.-+..|+.+..| +.+.+..+++.....+...++ .||...+.+++
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~~-~it~~~v~~~L 227 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQAQR-KLTIPFVKEIL 227 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHh
Confidence 43 33345677777764 456666777765433333344 69999888775
No 98
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=3e-11 Score=146.08 Aligned_cols=208 Identities=18% Similarity=0.198 Sum_probs=138.3
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhcccee-------ee-e
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-------SI-S 483 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~-------~i-s 483 (884)
.++..|+++.|...++..+.+++.. -+++..+||+||+||||||+++++|..++.... .+ +
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 3567899999988888776665442 134566899999999999999999998865311 10 0
Q ss_pred cchhhhh------hcc----ccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhc
Q 002754 484 ASQFVEI------YVG----VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (884)
Q Consensus 484 ~s~~~~~------~~g----~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld 549 (884)
|-.+... .+. .....++.+.+.+.. ....|++|||++.+... .++.||..|+
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e--------------AqNALLKtLE 144 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS--------------SFNALLKTLE 144 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH--------------HHHHHHHHHh
Confidence 0000000 010 111234555554432 33469999999998654 8899999998
Q ss_pred cccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHH
Q 002754 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELA 628 (884)
Q Consensus 550 ~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~ 628 (884)
. ...++.||++|+.+..|.+.+++ |+ .++.|.+++.++....++..+...++. .+..+..++..+.| +.+++.
T Consensus 145 E--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~AL 218 (944)
T PRK14949 145 E--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDAL 218 (944)
T ss_pred c--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4 45677788778888889999998 55 488999999999999998877654332 22346667777765 455566
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHH
Q 002754 629 NIVEVAAINMMRDGRTEITTDDLLQA 654 (884)
Q Consensus 629 ~Lv~~A~~~A~~~~~~~It~edi~~A 654 (884)
+++..+.. . +...++.+.+...
T Consensus 219 nLLdQala--~--~~~~It~~~V~~l 240 (944)
T PRK14949 219 SLTDQAIA--F--GGGQVMLTQVQTM 240 (944)
T ss_pred HHHHHHHH--h--cCCcccHHHHHHH
Confidence 77776662 2 2335666665544
No 99
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.28 E-value=5.7e-11 Score=141.53 Aligned_cols=192 Identities=20% Similarity=0.224 Sum_probs=122.2
Q ss_pred CCc-EEEECCCCCCchhHHHHhhhhh----------ccceeeeecchhhhhh---------c-ccc-------chhhhhH
Q 002754 451 PGG-ILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEIY---------V-GVG-------ASRVRSL 502 (884)
Q Consensus 451 ~~g-iLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~~~~---------~-g~~-------~~~l~~l 502 (884)
|.+ ++|+|+||||||++++.+..++ ...+++|+|..+...+ + +.. ...+..+
T Consensus 780 pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerL 859 (1164)
T PTZ00112 780 SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRL 859 (1164)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 334 5699999999999999998765 1456788885433221 1 111 1123445
Q ss_pred HHHHH--hcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCC---CCCCCccCCCCC
Q 002754 503 YQEAK--DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR---PDILDPALVRPG 577 (884)
Q Consensus 503 f~~a~--~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~---~~~LdpaLlr~g 577 (884)
|.... .....||+|||||.+.... ..+|..|+.... .....++||+.+|. ++.++|.+.+
T Consensus 860 F~~L~k~~r~v~IIILDEID~L~kK~-----------QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS-- 924 (1164)
T PTZ00112 860 FNQNKKDNRNVSILIIDEIDYLITKT-----------QKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS-- 924 (1164)
T ss_pred HhhhhcccccceEEEeehHhhhCccH-----------HHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--
Confidence 54442 2335689999999986431 224555554433 23467889999986 4467788877
Q ss_pred cccc-cccCCCCChhhHHHHHHHHHccCC-CCCcccHHHHHh---hCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 002754 578 RFDR-KIFIPKPGLIGRMEILKVHARKKP-MADDVDYLAVAS---MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (884)
Q Consensus 578 Rfd~-~I~~~~P~~eeR~~Il~~~l~~~~-~~~didl~~lA~---~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~ 652 (884)
||.. .|.|++|+.+++.+||+.++.... ..++..+..+|. ...|-.+..| .+|+.|+.. .+...|+.+|+.
T Consensus 925 RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKAL-DILRrAgEi---kegskVT~eHVr 1000 (1164)
T PTZ00112 925 RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKAL-QICRKAFEN---KRGQKIVPRDIT 1000 (1164)
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHH-HHHHHHHhh---cCCCccCHHHHH
Confidence 5543 588999999999999999887532 223333555555 3334333333 566666643 344589999999
Q ss_pred HHHHHHHcC
Q 002754 653 QAAQIEERG 661 (884)
Q Consensus 653 ~Al~~~~~g 661 (884)
.|+..+...
T Consensus 1001 kAleeiE~s 1009 (1164)
T PTZ00112 1001 EATNQLFDS 1009 (1164)
T ss_pred HHHHHHHhh
Confidence 998766443
No 100
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.27 E-value=4e-11 Score=148.57 Aligned_cols=217 Identities=23% Similarity=0.328 Sum_probs=143.4
Q ss_pred ccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh----------ccceeeee
Q 002754 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 483 (884)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is 483 (884)
+-.++.+.|.+.. ++.++..+... -..+++|+||||||||++++.||..+ +..++.++
T Consensus 183 ~~~ld~~iGr~~e---i~~~i~~l~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 183 EGKIDPVLGRDDE---IRQMIDILLRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCCcccCCHHH---HHHHHHHHhcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 3456667676654 34444433221 12358999999999999999999865 24567777
Q ss_pred cchhhh--hhccccchhhhhHHHHHHh-cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEE
Q 002754 484 ASQFVE--IYVGVGASRVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 560 (884)
Q Consensus 484 ~s~~~~--~~~g~~~~~l~~lf~~a~~-~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVI 560 (884)
++.+.. .|.|.....++.+++.+.. ..++|+||||++.+.+.++. +++.. .-+.|...+ .++.+.+|
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~---~~~~d---~~n~Lkp~l----~~G~l~~I 320 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ---AGQGD---AANLLKPAL----ARGELRTI 320 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc---ccccc---HHHHhhHHh----hCCCeEEE
Confidence 776552 4777777889999998865 45789999999999765321 11111 222333333 46788999
Q ss_pred eccCCCC-----CCCccCCCCCcccccccCCCCChhhHHHHHHHHHccC----CC-CCcccHHHHHhhCCCC-----CHH
Q 002754 561 ASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK----PM-ADDVDYLAVASMTDGM-----VGA 625 (884)
Q Consensus 561 atTN~~~-----~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~----~~-~~didl~~lA~~t~G~-----s~a 625 (884)
++|+..+ .+||+|.| ||. .|.|+.|+.+++..||+...... .+ ..+..+..++..+.+| -|.
T Consensus 321 gaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPD 397 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPD 397 (852)
T ss_pred EecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCcc
Confidence 8887643 48999999 996 89999999999999986555332 11 1344466667766655 345
Q ss_pred HHHHHHHHHHHHHHHh-CCCccCHHHHHHHH
Q 002754 626 ELANIVEVAAINMMRD-GRTEITTDDLLQAA 655 (884)
Q Consensus 626 dL~~Lv~~A~~~A~~~-~~~~It~edi~~Al 655 (884)
....++++|+...... ....+..+++...+
T Consensus 398 KAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 398 KAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred HHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 5568889987655443 33345555555444
No 101
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.27 E-value=3.3e-11 Score=126.86 Aligned_cols=179 Identities=16% Similarity=0.202 Sum_probs=116.0
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcC
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~ 527 (884)
+..++|+||+|||||+|+++++..+ +.+++.++++.+.... ..++.... .+.+++|||++.+....
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~- 106 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP- 106 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh-
Confidence 4569999999999999999999876 4567788877654321 12333222 24589999999875321
Q ss_pred CCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCC---ccCCCCCcc--cccccCCCCChhhHHHHHHHHHc
Q 002754 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD---PALVRPGRF--DRKIFIPKPGLIGRMEILKVHAR 602 (884)
Q Consensus 528 ~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~Ld---paLlr~gRf--d~~I~~~~P~~eeR~~Il~~~l~ 602 (884)
. ....|+..++........+|+.++..+..++ +.+.+ || ..+|.+|+|+.+++..+++.++.
T Consensus 107 --------~---~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 107 --------E---WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred --------H---HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 0 1223333333222223344444444443332 56666 55 47899999999999999998776
Q ss_pred cCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 603 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 603 ~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
..... ++.-+..|+.. -+-+.+++.++++.+...+...+ ..||.+.+.+.+
T Consensus 174 ~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 174 RRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred HcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 54432 23335667774 56688999999998876555555 469998887764
No 102
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.27 E-value=2e-11 Score=139.01 Aligned_cols=187 Identities=25% Similarity=0.303 Sum_probs=118.6
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh-hhccccchh-hhhHHHH----HHhcCCcEEEhhhHHHhhhh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGASR-VRSLYQE----AKDNAPSVVFIDELDAVGRE 525 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~-~~~g~~~~~-l~~lf~~----a~~~~p~Il~iDEId~l~~~ 525 (884)
.++||+||||||||++|++||..++.++..++++.+.. .|+|..... +..++.. +....++||||||+|++...
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK 196 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh
Confidence 45999999999999999999999999999998877643 377764322 2333322 22345779999999999764
Q ss_pred cCCCCCCCchhHHHHHHHHHHhhcccc-----------CCCceEEEeccCCCC---------------------------
Q 002754 526 RGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD--------------------------- 567 (884)
Q Consensus 526 r~~~~~Sgge~~~~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~~--------------------------- 567 (884)
....+.+.+-....+++.||+.|++.. +..++++|.|+|...
T Consensus 197 ~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~ 276 (413)
T TIGR00382 197 SENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAE 276 (413)
T ss_pred hccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccc
Confidence 321110000011136677777776532 124577888887610
Q ss_pred -----------------------CCCccCCCCCcccccccCCCCChhhHHHHHHHH----Hcc-------CCCC---Ccc
Q 002754 568 -----------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH----ARK-------KPMA---DDV 610 (884)
Q Consensus 568 -----------------------~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~----l~~-------~~~~---~di 610 (884)
.+.|+|+. |+|.++.|.+.+.+++.+|+... ++. .++. ++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~ 354 (413)
T TIGR00382 277 VKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEE 354 (413)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHH
Confidence 03467766 99999999999999999998753 211 1111 111
Q ss_pred cHHHHHhh--CCCCCHHHHHHHHHHHHHHHHH
Q 002754 611 DYLAVASM--TDGMVGAELANIVEVAAINMMR 640 (884)
Q Consensus 611 dl~~lA~~--t~G~s~adL~~Lv~~A~~~A~~ 640 (884)
-+..++.. ...+-.+.|+.+++....-...
T Consensus 355 a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 355 ALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred HHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 24445543 3455567777777766554444
No 103
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=5e-11 Score=140.78 Aligned_cols=209 Identities=19% Similarity=0.242 Sum_probs=139.9
Q ss_pred cccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceee--eecch----
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ---- 486 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~--is~s~---- 486 (884)
.+..|+++.|...++..+.+.+.. .+++..++|+||+|+||||+|+++|..+...... -.|+.
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 567889999988888766665542 2345568999999999999999999987542110 00110
Q ss_pred -------hhhhh-c----cccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcc
Q 002754 487 -------FVEIY-V----GVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 550 (884)
Q Consensus 487 -------~~~~~-~----g~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~ 550 (884)
+.+.+ + ......++.+.+.+.. ..+.|++|||+|.+... .++.|+..++.
T Consensus 80 ~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~--------------a~naLLK~LEe 145 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS--------------AFNAMLKTLEE 145 (527)
T ss_pred HHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH--------------HHHHHHHHHhC
Confidence 00000 0 0112234556655543 22469999999887543 67889988884
Q ss_pred ccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHH
Q 002754 551 FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELAN 629 (884)
Q Consensus 551 ~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~ 629 (884)
...++++|.+|+.+..+.+.+++ |+ ..+.|.+++.++....+...+...++. ++..+..++..+.| +.+++.+
T Consensus 146 --pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~ 219 (527)
T PRK14969 146 --PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALS 219 (527)
T ss_pred --CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 45677788777778888888888 65 489999999999998888877654443 22335666776654 5666778
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 630 IVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 630 Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
++..+... +...|+.+++...+.
T Consensus 220 lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 220 LLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHh----cCCCcCHHHHHHHHC
Confidence 88777533 455688888877653
No 104
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.1e-11 Score=136.31 Aligned_cols=243 Identities=20% Similarity=0.235 Sum_probs=142.2
Q ss_pred hhhhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhh--cChhHH
Q 002754 308 KDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAE--QNPHLK 385 (884)
Q Consensus 308 ~~~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~i~~Lekel~~~~~~~~~~~~~~~~--~~~~~k 385 (884)
..++.|..| +.-++++|+|||.-|...+. |.+....+.++.++++++++.++-........+....-.+ .....+
T Consensus 474 ~VCtdIIHL-D~qkLhyYrGNY~~FKKmY~--Qk~~e~~K~yekQeK~LkelKa~GkS~KqAEkq~Ke~ltrKq~K~~~K 550 (807)
T KOG0066|consen 474 SVCTDIIHL-DNQKLHYYRGNYTLFKKMYA--QKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQKKGGKK 550 (807)
T ss_pred HHHHHHhhh-hhhhhhhhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhcccc
Confidence 456778888 88899999999999999999 6666677888888888888776543222111100000000 000011
Q ss_pred HhhchhhhHHHHHHHhcCCCCcccccCcccccccccCchhHHHHHHHHHHhh-ccccccccc--ccccCCcEEEECCCCC
Q 002754 386 MAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRR--GVRIPGGILLCGPPGV 462 (884)
Q Consensus 386 ~~v~~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~-~~~~~~~~~--g~~i~~giLL~GPpGt 462 (884)
...+.++..+.. -+.+..+-...+.|++...+...++++.++.+.| +...+|..+ |+.....|+|+||||+
T Consensus 551 nq~dded~gapE------LL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGV 624 (807)
T KOG0066|consen 551 NQNDDEDAGAPE------LLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGV 624 (807)
T ss_pred ccCccccccCHH------HHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCc
Confidence 111111111100 0011233345778899999999999999999988 445566654 5555566999999999
Q ss_pred CchhHHHHhhhhhccceeeeecchhhhh-hccccch-hh---hhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCC------
Q 002754 463 GKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGAS-RV---RSLYQEAKDNAPSVVFIDELDAVGRERGLIKG------ 531 (884)
Q Consensus 463 GKTtLakaLA~el~~~~~~is~s~~~~~-~~g~~~~-~l---~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~------ 531 (884)
|||||++.|.|.+.+.-+.+.-...... ++.+... .+ ....+.+.+. . -+--.+.+..++..++.+.
T Consensus 625 GKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~-F-Nlpyq~ARK~LG~fGL~sHAHTiki 702 (807)
T KOG0066|consen 625 GKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRK-F-NLPYQEARKQLGTFGLASHAHTIKI 702 (807)
T ss_pred cHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHh-c-CCChHHHHHHhhhhhhhhccceEee
Confidence 9999999999999876665433221111 1111110 00 0011111110 0 0222344444444333221
Q ss_pred ---CCchhHHHHHHHHHHhhccccCCCceEEE-eccCCCC
Q 002754 532 ---SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (884)
Q Consensus 532 ---Sgge~~~~~l~~LL~~ld~~~~~~~VlVI-atTN~~~ 567 (884)
|||++.+.+++.|. .....|+|+ .+||.++
T Consensus 703 kdLSGGQKaRValaeLa------l~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 703 KDLSGGQKARVALAELA------LGGPDVLILDEPTNNLD 736 (807)
T ss_pred eecCCcchHHHHHHHHh------cCCCCEEEecCCCCCcc
Confidence 89999999999887 456677777 7888765
No 105
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=5.9e-11 Score=139.11 Aligned_cols=203 Identities=22% Similarity=0.290 Sum_probs=137.9
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc------------
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (884)
+.++..|+++.|.+.++..+.+.+.. ..++..+||+|||||||||+++++|..+...
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 34677889999988887777666542 2345558999999999999999999977431
Q ss_pred -----------eeeeecchhhhhhccccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHH
Q 002754 479 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (884)
Q Consensus 479 -----------~~~is~s~~~~~~~g~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~ 543 (884)
+..++.+. ..+...++.+.+.+.. ..+.+++|||+|.+... .++.
T Consensus 76 c~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~--------------a~na 135 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS--------------AFNA 135 (504)
T ss_pred hHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHH--------------HHHH
Confidence 11111110 1112234444444332 34569999999876432 6788
Q ss_pred HHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCC
Q 002754 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (884)
Q Consensus 544 LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~ 622 (884)
|+..++. ...++++|.+||.+..+.+.+.+ |+. .+.|.+|+.++....++..+...++. ++..+..++..+.|
T Consensus 136 LLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G- 209 (504)
T PRK14963 136 LLKTLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG- 209 (504)
T ss_pred HHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888883 44567777788888899999988 654 78999999999999999888765543 33346667777765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 623 s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
..+++.++++.+.. . ...||.+++...+
T Consensus 210 dlR~aln~Lekl~~---~--~~~It~~~V~~~l 237 (504)
T PRK14963 210 AMRDAESLLERLLA---L--GTPVTRKQVEEAL 237 (504)
T ss_pred CHHHHHHHHHHHHh---c--CCCCCHHHHHHHH
Confidence 44555566665532 1 2369998887764
No 106
>PLN03025 replication factor C subunit; Provisional
Probab=99.26 E-value=8.3e-11 Score=130.94 Aligned_cols=203 Identities=16% Similarity=0.174 Sum_probs=129.3
Q ss_pred cccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhcc-----ceeeee
Q 002754 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-----NFFSIS 483 (884)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~-----~~~~is 483 (884)
.++..+..|+++.|....+..+..++.. ... .+++|+|||||||||+++++|.++.. .++.++
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVSRLQVIARD-----------GNM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 3455677888888888777666655431 112 24899999999999999999998722 244444
Q ss_pred cchhhhhhccccchhhhhHHHHHH-------hcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCc
Q 002754 484 ASQFVEIYVGVGASRVRSLYQEAK-------DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN 556 (884)
Q Consensus 484 ~s~~~~~~~g~~~~~l~~lf~~a~-------~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~ 556 (884)
.++... ...++....... ...+.+++|||+|.+... ..+.|+..|+.. ..+
T Consensus 72 ~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~~lE~~--~~~ 129 (319)
T PLN03025 72 ASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRRTMEIY--SNT 129 (319)
T ss_pred cccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHHHHhcc--cCC
Confidence 433211 111222222111 123569999999998544 455666666632 334
Q ss_pred eEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 002754 557 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAA 635 (884)
Q Consensus 557 VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~ 635 (884)
+.+|.++|....+.+++++ |+ ..+.|++|+.++....++..+...++. ++..+..++..+.| |++.+++...
T Consensus 130 t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~Lq 202 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNLQ 202 (319)
T ss_pred ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHH
Confidence 5677778888888889988 65 389999999999999999887654432 33446777777654 4444443332
Q ss_pred HHHHHhCCCccCHHHHHHH
Q 002754 636 INMMRDGRTEITTDDLLQA 654 (884)
Q Consensus 636 ~~A~~~~~~~It~edi~~A 654 (884)
..+ .+...||.+++...
T Consensus 203 ~~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 203 ATH--SGFGFVNQENVFKV 219 (319)
T ss_pred HHH--hcCCCCCHHHHHHH
Confidence 111 23456898888654
No 107
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.25 E-value=6.4e-11 Score=133.27 Aligned_cols=204 Identities=24% Similarity=0.309 Sum_probs=138.8
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc------------
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (884)
+..+..|+++.|....+..+.+.+.. ...+..++|+||+|+|||+++++++..+...
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34567888899988888766655432 1345668999999999999999999876432
Q ss_pred ------------eeeeecchhhhhhccccchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHH
Q 002754 479 ------------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (884)
Q Consensus 479 ------------~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~ 542 (884)
++.++.+. ......++.+++.+... ...|++|||+|.+... .++
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~--------------~~~ 135 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS--------------AFN 135 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH--------------HHH
Confidence 11111110 01112345566655432 2358999999887543 577
Q ss_pred HHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCC
Q 002754 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 621 (884)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G 621 (884)
.|+..++. ...++++|.+||.++.+.+.+.+ |+. .+.|++|+.++...++..++...+.. ++..+..++..+.|
T Consensus 136 ~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 136 ALLKTLEE--PPEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHHhC--CccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888874 34567777778888888888888 764 78999999999999999888766543 23345566777655
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 622 ~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
+++.+.+.++.+.... ...||.+++.+++
T Consensus 211 -~~~~a~~~lekl~~~~----~~~it~~~v~~~~ 239 (355)
T TIGR02397 211 -SLRDALSLLDQLISFG----NGNITYEDVNELL 239 (355)
T ss_pred -ChHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 5566666666655432 2359999998775
No 108
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=3.6e-11 Score=136.82 Aligned_cols=189 Identities=20% Similarity=0.300 Sum_probs=125.1
Q ss_pred ccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccce------eee-ecchhh
Q 002754 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF------FSI-SASQFV 488 (884)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~------~~i-s~s~~~ 488 (884)
.|+++.|.+.++..+.+++..-.. .+...+..++.++||+||+|+|||++|+++|..+.... +.+ +|..+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 367788888888888887764221 23345556788899999999999999999998663321 100 000000
Q ss_pred -----hh-hc---c--ccchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccC
Q 002754 489 -----EI-YV---G--VGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG 553 (884)
Q Consensus 489 -----~~-~~---g--~~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~ 553 (884)
+. ++ + .....++.+++.+... .+.|++|||+|.+... ..+.||..|+. .
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~--------------aanaLLk~LEe--p 144 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER--------------AANALLKAVEE--P 144 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH--------------HHHHHHHHhhc--C
Confidence 00 00 0 1123356677766542 3469999999998654 56788888884 3
Q ss_pred CCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHH
Q 002754 554 RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELAN 629 (884)
Q Consensus 554 ~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~ 629 (884)
..++++|.+|+.++.+.|.+++ |+ ..++|++|+.++...++.... +. +......++..+.|..+..+.-
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 4456666556568999999999 65 489999999999887776332 22 2334567788888887766543
No 109
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=7.6e-11 Score=138.63 Aligned_cols=209 Identities=18% Similarity=0.232 Sum_probs=136.7
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccce-------eee-e
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-------FSI-S 483 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~-------~~i-s 483 (884)
.++..|+++.|.+..+..+.+.+.. .+++..++|+||+|+||||+|+.+|..+.... +.+ +
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 3567899999988888666655442 13455689999999999999999999765311 100 0
Q ss_pred c-----chhhhhh-c-c---ccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhc
Q 002754 484 A-----SQFVEIY-V-G---VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (884)
Q Consensus 484 ~-----s~~~~~~-~-g---~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld 549 (884)
| +.+.+.+ + + .+...++.+.+.+.. ....|++|||+|.+... .++.|+..|+
T Consensus 79 C~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~--------------a~naLLK~LE 144 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ--------------SFNALLKTLE 144 (546)
T ss_pred HHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHH--------------HHHHHHHHHh
Confidence 0 0000000 0 0 011223445544432 23569999999988644 7888998888
Q ss_pred cccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHH
Q 002754 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELA 628 (884)
Q Consensus 550 ~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~ 628 (884)
. ...++++|.+|+.+..+.+.+++ |. ..+.|.+++.++....+...+...+.. ++..+..++..+. -+.+++.
T Consensus 145 e--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-GdlR~al 218 (546)
T PRK14957 145 E--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GSLRDAL 218 (546)
T ss_pred c--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHH
Confidence 4 44667777666778888888888 55 489999999999988888877654433 3334566676664 5666666
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 629 NIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 629 ~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
++++.+.... + ..|+.+++..++
T Consensus 219 nlLek~i~~~---~-~~It~~~V~~~l 241 (546)
T PRK14957 219 SLLDQAISFC---G-GELKQAQIKQML 241 (546)
T ss_pred HHHHHHHHhc---c-CCCCHHHHHHHH
Confidence 7777665332 2 468888888754
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=9e-11 Score=138.89 Aligned_cols=204 Identities=21% Similarity=0.260 Sum_probs=136.9
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc------------
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (884)
+.+...|+++.|...++..+.+++.. -+++..+||+||+|+||||+|++||..+...
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 34677888998888877666665542 1345669999999999999999999987542
Q ss_pred ------------eeeeecchhhhhhccccchhhhhHHHHHH----hcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHH
Q 002754 479 ------------FFSISASQFVEIYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (884)
Q Consensus 479 ------------~~~is~s~~~~~~~g~~~~~l~~lf~~a~----~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~ 542 (884)
++.++... ......++.+.+.+. .....|++|||++.+... .++
T Consensus 78 sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~--------------a~n 137 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE--------------AFN 137 (624)
T ss_pred HHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH--------------HHH
Confidence 11121110 001122333333322 233569999999998544 678
Q ss_pred HHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCC-CCcccHHHHHhhCCC
Q 002754 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDG 621 (884)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~-~~didl~~lA~~t~G 621 (884)
.|+..|+. ...++++|.+||.+..+.+.+++ |+. +|.|++++.++...++...+..... .++..+..++..+.|
T Consensus 138 aLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 138 ALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888884 34578888888888888888888 664 7899999999999999887765543 233446677777765
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 622 ~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
. .+++.++++.+. ..+...||.+++..++
T Consensus 213 d-lR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 213 S-VRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred C-HHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 3 444445555442 2344579998887665
No 111
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.23 E-value=2e-10 Score=128.17 Aligned_cols=210 Identities=20% Similarity=0.284 Sum_probs=129.1
Q ss_pred ccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhc-----cceeeeec
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISA 484 (884)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~-----~~~~~is~ 484 (884)
++..+..|++..|....+..+..++.. . . .++++|+||||||||+++++++.++. .+++.+++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~---~--------~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDS---P--------N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhC---C--------C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 444566788888877777666655431 0 1 12589999999999999999999773 34567777
Q ss_pred chhhhhh---c----------cc-------cchhhhhHHHHHHh-----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHH
Q 002754 485 SQFVEIY---V----------GV-------GASRVRSLYQEAKD-----NAPSVVFIDELDAVGRERGLIKGSGGQERDA 539 (884)
Q Consensus 485 s~~~~~~---~----------g~-------~~~~l~~lf~~a~~-----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~ 539 (884)
+++.... . +. ....++.+...... ..+.++++||++.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-------------- 140 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-------------- 140 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH--------------
Confidence 6543211 0 00 01112222222222 23469999999877432
Q ss_pred HHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhh
Q 002754 540 TLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASM 618 (884)
Q Consensus 540 ~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~ 618 (884)
..+.|...++... .++.+|.+++.+..+.+.+.+ |+ ..+.|++|+.++...+++..+...+.. ++..+..++..
T Consensus 141 ~~~~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~ 215 (337)
T PRK12402 141 AQQALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY 215 (337)
T ss_pred HHHHHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3344555555332 234455555556667777877 55 378999999999999999888765543 34456777777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 619 TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 619 t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
+.| |++.+++.....+ . +...||.+++.+++.
T Consensus 216 ~~g----dlr~l~~~l~~~~-~-~~~~It~~~v~~~~~ 247 (337)
T PRK12402 216 AGG----DLRKAILTLQTAA-L-AAGEITMEAAYEALG 247 (337)
T ss_pred cCC----CHHHHHHHHHHHH-H-cCCCCCHHHHHHHhC
Confidence 643 4444444443333 2 233699999988653
No 112
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=8.1e-11 Score=144.45 Aligned_cols=211 Identities=18% Similarity=0.171 Sum_probs=138.9
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhcccee-------ee-
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-------SI- 482 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~-------~i- 482 (884)
+.....|+++.|.+.++..+.+.+.. -+++..+||+||+||||||++++||..+.+..+ .+
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 44677899999988877666655431 234556899999999999999999998854211 11
Q ss_pred ecchh-------hhh-hc-c---ccchhhhhHHHHHH----hcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHH
Q 002754 483 SASQF-------VEI-YV-G---VGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLV 546 (884)
Q Consensus 483 s~s~~-------~~~-~~-g---~~~~~l~~lf~~a~----~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~ 546 (884)
+|-.+ .+. .+ + .+...++.+.+.+. ...+.|++|||+|.+... .+|.||.
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~--------------a~NaLLK 142 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ--------------GFNALLK 142 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHH--------------HHHHHHH
Confidence 00000 000 00 0 01122344333322 244569999999998654 7889999
Q ss_pred hhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHH
Q 002754 547 CLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGA 625 (884)
Q Consensus 547 ~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~a 625 (884)
.|+. ...+++||++|+.++.|.+.|++ |. .++.|..++.++...+|...+...++. ++..+..++..+.| +.+
T Consensus 143 ~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR 216 (824)
T PRK07764 143 IVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVR 216 (824)
T ss_pred HHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9984 45677888778888888889988 54 388999999999999998888665543 23335566666655 667
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 626 ELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 626 dL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
++.++++..+.. .+...||.+++...+
T Consensus 217 ~Al~eLEKLia~---~~~~~IT~e~V~all 243 (824)
T PRK07764 217 DSLSVLDQLLAG---AGPEGVTYERAVALL 243 (824)
T ss_pred HHHHHHHHHHhh---cCCCCCCHHHHHHHh
Confidence 777777765522 234468888776543
No 113
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.22 E-value=2.3e-10 Score=138.87 Aligned_cols=208 Identities=23% Similarity=0.278 Sum_probs=131.4
Q ss_pred cccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhc
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 492 (884)
++..|++..|....+....-+...+.. .-..+++|+|||||||||+|++++...+.+++.+++....
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~---- 89 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG---- 89 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh----
Confidence 456677777766655332222222211 1123589999999999999999999998888877764211
Q ss_pred cccchhhhhHHHHHH-----hcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEecc--CC
Q 002754 493 GVGASRVRSLYQEAK-----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NR 565 (884)
Q Consensus 493 g~~~~~l~~lf~~a~-----~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatT--N~ 565 (884)
...++..+..+. .....++||||+|.+... ..+.|+..++ ...+++|++| |.
T Consensus 90 ---i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~--------------qQdaLL~~lE----~g~IiLI~aTTenp 148 (725)
T PRK13341 90 ---VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA--------------QQDALLPWVE----NGTITLIGATTENP 148 (725)
T ss_pred ---hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH--------------HHHHHHHHhc----CceEEEEEecCCCh
Confidence 111223333321 124569999999988543 3455665554 3456677554 44
Q ss_pred CCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHcc-------CCC-CCcccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 002754 566 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK-------KPM-ADDVDYLAVASMTDGMVGAELANIVEVAAIN 637 (884)
Q Consensus 566 ~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~-------~~~-~~didl~~lA~~t~G~s~adL~~Lv~~A~~~ 637 (884)
...+++++++ |. .++.|++++.+++..|++..+.. ..+ .++..+..++..+.| ..+.+.++++.+...
T Consensus 149 ~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~~ 224 (725)
T PRK13341 149 YFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVES 224 (725)
T ss_pred HhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 4568899998 54 37899999999999999988762 111 123336677777754 456666777776643
Q ss_pred HHHhC--CCccCHHHHHHHHHHH
Q 002754 638 MMRDG--RTEITTDDLLQAAQIE 658 (884)
Q Consensus 638 A~~~~--~~~It~edi~~Al~~~ 658 (884)
+...+ ...||.+++.+++...
T Consensus 225 ~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 225 TPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred cccCCCCceeccHHHHHHHHHHh
Confidence 32222 2238888888887653
No 114
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=1.3e-10 Score=135.70 Aligned_cols=210 Identities=21% Similarity=0.283 Sum_probs=138.0
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc-------eeee-
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSI- 482 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~-------~~~i- 482 (884)
+.++..|.++.|....+..+.+.+.. -.++..++|+||+|+||||+|+.+|..+... .+.+
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 34566888898988888766665542 1244568999999999999999999987531 1110
Q ss_pred ecc-----hhhhhh-c----cccchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhh
Q 002754 483 SAS-----QFVEIY-V----GVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (884)
Q Consensus 483 s~s-----~~~~~~-~----g~~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~l 548 (884)
+|. .+.+.+ + ..+...++.+.+.+... .+.|++|||++.+... .++.|+..+
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~--------------a~naLLk~L 143 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE--------------AFNALLKTL 143 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH--------------HHHHHHHHH
Confidence 110 001111 0 01112234555444432 3469999999987543 677888888
Q ss_pred ccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCC-cccHHHHHhhCCCCCHHHH
Q 002754 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGAEL 627 (884)
Q Consensus 549 d~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~-didl~~lA~~t~G~s~adL 627 (884)
+. ...++++|.+|+.++.+++++.+ |+. .+.|++|+.++...++..++...++.- +..+..++..+.| +.+++
T Consensus 144 Ee--pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~a 217 (486)
T PRK14953 144 EE--PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDA 217 (486)
T ss_pred hc--CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 74 34556666666777888888888 654 789999999999999998887665432 2335667777654 45666
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 628 ANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 628 ~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
.++++.+... +...||.+++..++
T Consensus 218 l~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 218 ASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 6777766533 34468999988765
No 115
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=7.7e-11 Score=139.72 Aligned_cols=210 Identities=20% Similarity=0.215 Sum_probs=138.9
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccce-------eee-e
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-------FSI-S 483 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~-------~~i-s 483 (884)
.++..|+++.|...++..+.+.+.. .+++..+||+||+||||||+++++|..+.... +.+ +
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 4567889999988887776665542 23556689999999999999999999775321 111 0
Q ss_pred cchh-------hhh-hc-c---ccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHh
Q 002754 484 ASQF-------VEI-YV-G---VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVC 547 (884)
Q Consensus 484 ~s~~-------~~~-~~-g---~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ 547 (884)
|-.+ .+. .+ + .+...++.+.+.+.. ....|++|||++.+... .++.||..
T Consensus 76 C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~--------------A~NALLK~ 141 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA--------------GFNALLKI 141 (584)
T ss_pred HHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH--------------HHHHHHHH
Confidence 0000 000 00 0 011223444433322 33469999999887543 78899999
Q ss_pred hccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHH
Q 002754 548 LDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAE 626 (884)
Q Consensus 548 ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~ad 626 (884)
|+ ....+++||.+|+.++.+.+.+++ |. .++.|..++.++....+...+...+.. ++..+..++..+ |-+.++
T Consensus 142 LE--Epp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s-~GdlR~ 215 (584)
T PRK14952 142 VE--EPPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG-GGSPRD 215 (584)
T ss_pred Hh--cCCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHH
Confidence 98 455688888888888899999988 53 489999999999998998888765543 233345555554 456677
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 627 LANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 627 L~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
+.++++.+... .+...||.+++...+
T Consensus 216 aln~Ldql~~~---~~~~~It~~~v~~ll 241 (584)
T PRK14952 216 TLSVLDQLLAG---AADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHHHhc---cCCCCcCHHHHHHHH
Confidence 77888776532 234568888877664
No 116
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=1.4e-10 Score=139.11 Aligned_cols=210 Identities=21% Similarity=0.287 Sum_probs=142.0
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceee---eecchh
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---ISASQF 487 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~---is~s~~ 487 (884)
+.++..|.++.|.+.++..+.+.+.. -.++..+||+||+|+|||++|+++|..+.+.... -.|+..
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 34677899999988888777665542 1345668999999999999999999977542110 011110
Q ss_pred -------hhhhcc-----ccchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc
Q 002754 488 -------VEIYVG-----VGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF 551 (884)
Q Consensus 488 -------~~~~~g-----~~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~ 551 (884)
...+.+ .+...++.+.+.+... .+.|++|||++.+... .++.|+..|+.
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~--------------A~NALLKtLEE- 144 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS--------------AFNALLKTLEE- 144 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH--------------HHHHHHHHhhc-
Confidence 000101 1123356666666543 3469999999987543 78889988884
Q ss_pred cCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCC-cccHHHHHhhCCCCCHHHHHHH
Q 002754 552 EGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGAELANI 630 (884)
Q Consensus 552 ~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~-didl~~lA~~t~G~s~adL~~L 630 (884)
....+++|.+|+.++.|++.+++ |+. ++.|.+|+.++...++...+...+..- +..+..++..+.| +.+++..+
T Consensus 145 -PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Alsl 219 (725)
T PRK07133 145 -PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSI 219 (725)
T ss_pred -CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 45677888788888999999988 664 899999999999999988776554432 2335667777664 45566666
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 631 VEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 631 v~~A~~~A~~~~~~~It~edi~~Al 655 (884)
+..+... +...|+.+++...+
T Consensus 220 Lekl~~y----~~~~It~e~V~ell 240 (725)
T PRK07133 220 AEQVSIF----GNNKITLKNVEELF 240 (725)
T ss_pred HHHHHHh----ccCCCCHHHHHHHH
Confidence 6665432 23348888887654
No 117
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.21 E-value=2.5e-10 Score=141.96 Aligned_cols=174 Identities=24% Similarity=0.385 Sum_probs=120.0
Q ss_pred cCCcEEEECCCCCCchhHHHHhhhhh----------ccceeeeecchhh--hhhccccchhhhhHHHHHHhcCCcEEEhh
Q 002754 450 IPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKDNAPSVVFID 517 (884)
Q Consensus 450 i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~--~~~~g~~~~~l~~lf~~a~~~~p~Il~iD 517 (884)
.+.+++|+||||||||++++.||..+ +.+++.++++.+. ..|.|+.+..++.+++.+....++|+|||
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiD 278 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVID 278 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34568999999999999999999876 3678888888765 35777778889999999987788899999
Q ss_pred hHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCC-----CCCccCCCCCcccccccCCCCChhh
Q 002754 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIG 592 (884)
Q Consensus 518 EId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~-----~LdpaLlr~gRfd~~I~~~~P~~ee 592 (884)
|++.+.+.... .|+. ...+.|...+ .++.+.+|++|+..+ ..||+|.+ ||. .|.++.|+.++
T Consensus 279 Eih~l~~~g~~---~g~~---~~a~lLkp~l----~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e 345 (821)
T CHL00095 279 EVHTLIGAGAA---EGAI---DAANILKPAL----ARGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEE 345 (821)
T ss_pred cHHHHhcCCCC---CCcc---cHHHHhHHHH----hCCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHH
Confidence 99998754321 1111 1222222222 357788998888654 46899999 997 58999999999
Q ss_pred HHHHHHHHHc----cCCC-CCcccHHHHHhhCCCCC-----HHHHHHHHHHHHH
Q 002754 593 RMEILKVHAR----KKPM-ADDVDYLAVASMTDGMV-----GAELANIVEVAAI 636 (884)
Q Consensus 593 R~~Il~~~l~----~~~~-~~didl~~lA~~t~G~s-----~adL~~Lv~~A~~ 636 (884)
...|++.... ...+ .++..+..++..+.+|. |.....++++|+.
T Consensus 346 ~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 346 TIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 9898875432 1121 12333555555555543 3344456666554
No 118
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=1.6e-10 Score=138.05 Aligned_cols=208 Identities=22% Similarity=0.287 Sum_probs=141.1
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhcccee-------ee-e
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-------SI-S 483 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~-------~i-s 483 (884)
.++..|+++.|...++..+.+.+.. .+++..+||+||+|+||||+++++|..+...-. .+ +
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 3567899999999888777766542 245666899999999999999999998753211 00 0
Q ss_pred cchh-----hhh--hcc---ccchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhc
Q 002754 484 ASQF-----VEI--YVG---VGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (884)
Q Consensus 484 ~s~~-----~~~--~~g---~~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld 549 (884)
|-.+ .+. +-| .+...++.+.+.+... ...|++|||+|.+... .++.|+..|+
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~--------------a~naLLk~LE 144 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN--------------AFNALLKTLE 144 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH--------------HHHHHHHHHH
Confidence 0000 000 001 1122345565555432 2459999999988644 7889999998
Q ss_pred cccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHH
Q 002754 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELA 628 (884)
Q Consensus 550 ~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~ 628 (884)
....+++||.+||.++.|.+.+++ |+. .+.|..++.++....+...+...++. ++..+..++..+.| +.+++.
T Consensus 145 --epp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al 218 (576)
T PRK14965 145 --EPPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSL 218 (576)
T ss_pred --cCCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 445678888888888999999998 554 88999999999888888877665543 33446677777765 556666
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHH
Q 002754 629 NIVEVAAINMMRDGRTEITTDDLLQA 654 (884)
Q Consensus 629 ~Lv~~A~~~A~~~~~~~It~edi~~A 654 (884)
+++..+.... + ..||.+++...
T Consensus 219 ~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 219 STLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHhc---c-CCCCHHHHHHH
Confidence 7776655332 2 35888887665
No 119
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.20 E-value=7.7e-11 Score=130.70 Aligned_cols=161 Identities=22% Similarity=0.268 Sum_probs=108.3
Q ss_pred cccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhh
Q 002754 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (884)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~ 488 (884)
.++.++..|+++.|.+..+..+...+.. ...|..++|+||+|+|||+++++++..++.+++.++++. .
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~ 79 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C 79 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c
Confidence 4556677888998888887666655541 123455777999999999999999999988888888765 1
Q ss_pred hhhccccchhhhhHHHHHH-hcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCC
Q 002754 489 EIYVGVGASRVRSLYQEAK-DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (884)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~-~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~ 567 (884)
. .......+..+..... ...+.+++|||+|.+... . ....|...++. ...++.||.+||.++
T Consensus 80 ~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~---~~~~L~~~le~--~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 80 R--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------D---AQRHLRSFMEA--YSKNCSFIITANNKN 142 (316)
T ss_pred c--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------H---HHHHHHHHHHh--cCCCceEEEEcCChh
Confidence 1 1110011111111111 134679999999877322 1 22333334443 235677888999999
Q ss_pred CCCccCCCCCcccccccCCCCChhhHHHHHHHHH
Q 002754 568 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 601 (884)
Q Consensus 568 ~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l 601 (884)
.+++++++ ||. .+.|+.|+.+++..+++.++
T Consensus 143 ~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 143 GIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred hchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 99999998 775 78999999999988876543
No 120
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.20 E-value=1.6e-10 Score=125.07 Aligned_cols=183 Identities=21% Similarity=0.221 Sum_probs=116.3
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh--hhccc----cchhh---------------------hhHHH
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE--IYVGV----GASRV---------------------RSLYQ 504 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~--~~~g~----~~~~l---------------------~~lf~ 504 (884)
..++|.||||||||++|++||..++.+++.+++..... ..+|. ....+ +.++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 34899999999999999999999999999998765321 11111 11100 11222
Q ss_pred HHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc--------------CCCceEEEeccCCCC---
Q 002754 505 EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------------GRGNVITIASTNRPD--- 567 (884)
Q Consensus 505 ~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~--------------~~~~VlVIatTN~~~--- 567 (884)
.+. .+.++++||++.+... +.+.|+..|+... ...++.||+|+|...
T Consensus 102 A~~--~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 102 AVR--EGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HHH--cCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 222 2459999999987654 5666666665311 124678999999763
Q ss_pred --CCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcc--cHHHHH---h-h--CCCCCHHHHHHHHHHHHHH
Q 002754 568 --ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDV--DYLAVA---S-M--TDGMVGAELANIVEVAAIN 637 (884)
Q Consensus 568 --~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~di--dl~~lA---~-~--t~G~s~adL~~Lv~~A~~~ 637 (884)
.++++|++ || ..+.++.|+.++..+|++.+.. ..+.. .+..++ + . ....+ ++.++.-|...
T Consensus 166 ~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~ 236 (262)
T TIGR02640 166 VHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG---LRASLMIAEVA 236 (262)
T ss_pred eecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHH
Confidence 56888988 88 4889999999999999998762 22111 011111 1 0 11222 44455544444
Q ss_pred HHHhCCCccCHHHHHHHHHHHH
Q 002754 638 MMRDGRTEITTDDLLQAAQIEE 659 (884)
Q Consensus 638 A~~~~~~~It~edi~~Al~~~~ 659 (884)
+....+..++.+||.+.+.-+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~ 258 (262)
T TIGR02640 237 TQQDIPVDVDDEDFVDLCIDIL 258 (262)
T ss_pred HHcCCCCCCCcHHHHHHHHHHh
Confidence 4556677888888888776553
No 121
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=1.1e-10 Score=137.52 Aligned_cols=204 Identities=21% Similarity=0.277 Sum_probs=137.4
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc------------
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (884)
+.++..|+++.|....+..+.+.+. +..++.++||+||+|+|||++|+++|..+...
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 3467788899898887766655432 12445679999999999999999999976421
Q ss_pred ------------eeeeecchhhhhhccccchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHH
Q 002754 479 ------------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (884)
Q Consensus 479 ------------~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~ 542 (884)
++.++.+. ..+...++.+.+.+... ...|++|||++.+... ..+
T Consensus 78 sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~--------------A~N 137 (605)
T PRK05896 78 VCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS--------------AWN 137 (605)
T ss_pred HHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH--------------HHH
Confidence 11111100 01112345555544432 2458999999987543 678
Q ss_pred HHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCC-CCcccHHHHHhhCCC
Q 002754 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDG 621 (884)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~-~~didl~~lA~~t~G 621 (884)
.|+..|+ ....++++|.+|+.+..+.+.+++ |+. .+.|++|+..+....+...+...+. .++..+..++..+.|
T Consensus 138 aLLKtLE--EPp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G 212 (605)
T PRK05896 138 ALLKTLE--EPPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG 212 (605)
T ss_pred HHHHHHH--hCCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8888888 345677888788888999999988 654 8999999999999999887765543 233346667777765
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 622 ~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
+.+++.++++.+.. ..+. .|+.+++...+
T Consensus 213 -dlR~AlnlLekL~~---y~~~-~It~e~V~ell 241 (605)
T PRK05896 213 -SLRDGLSILDQLST---FKNS-EIDIEDINKTF 241 (605)
T ss_pred -cHHHHHHHHHHHHh---hcCC-CCCHHHHHHHh
Confidence 56666666666442 2233 38888887653
No 122
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.1e-10 Score=128.07 Aligned_cols=195 Identities=25% Similarity=0.331 Sum_probs=134.7
Q ss_pred ccCCcEEEECCCCCCchhHHHHhhhhhccc-----eeeeecchhhhhh---------ccc------c-chhhhhHHHHHH
Q 002754 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-----FFSISASQFVEIY---------VGV------G-ASRVRSLYQEAK 507 (884)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~-----~~~is~s~~~~~~---------~g~------~-~~~l~~lf~~a~ 507 (884)
..|.+++++||||||||..++.++.++... +++++|-...+.| ++. . ...+..+++...
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~ 119 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLS 119 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH
Confidence 445569999999999999999999987443 7888887655431 111 0 111233444443
Q ss_pred h-cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCC---CCCccCCCCCcc-ccc
Q 002754 508 D-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF-DRK 582 (884)
Q Consensus 508 ~-~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~---~LdpaLlr~gRf-d~~ 582 (884)
. ...-|+++||+|.+....+ .++-.|+...+.. ..+|.+|+.+|..+ .+||.+.+ +| ...
T Consensus 120 ~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~ 184 (366)
T COG1474 120 KKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSE 184 (366)
T ss_pred hcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcce
Confidence 3 3455899999999976521 3666666555533 56788899998764 68888877 44 345
Q ss_pred ccCCCCChhhHHHHHHHHHccCCCC---CcccH---HHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 583 IFIPKPGLIGRMEILKVHARKKPMA---DDVDY---LAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 583 I~~~~P~~eeR~~Il~~~l~~~~~~---~didl---~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
|.||+++.+|...|+.......... ++.-+ ..++....| ..+-...+++.|+..|.+++...++.+++..|..
T Consensus 185 I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~ 263 (366)
T COG1474 185 IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQE 263 (366)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Confidence 8999999999999999887643211 11112 333445555 3444448999999999999999999999999965
Q ss_pred HHH
Q 002754 657 IEE 659 (884)
Q Consensus 657 ~~~ 659 (884)
.+.
T Consensus 264 ~~~ 266 (366)
T COG1474 264 EIE 266 (366)
T ss_pred Hhh
Confidence 443
No 123
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.19 E-value=9e-11 Score=145.83 Aligned_cols=164 Identities=24% Similarity=0.410 Sum_probs=116.9
Q ss_pred cccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh----------ccceeeeec
Q 002754 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISA 484 (884)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is~ 484 (884)
-.++.+.|-+.. ++.++..+... -..+++|+||||||||++++.||..+ +.+++.+++
T Consensus 175 ~~l~~vigr~~e---i~~~i~iL~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 175 GKLDPVIGRDEE---IRRTIQVLQRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCCcCCCCHHH---HHHHHHHHhcC---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 345666666654 34444433221 12348999999999999999999977 567888888
Q ss_pred chhh--hhhccccchhhhhHHHHHHh-cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEe
Q 002754 485 SQFV--EIYVGVGASRVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIA 561 (884)
Q Consensus 485 s~~~--~~~~g~~~~~l~~lf~~a~~-~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIa 561 (884)
+.+. ..|.|.....++.+|+.+.. ..++|+||||++.+.+... .+|+.. ..+.|... ..++.+.+|+
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~---~~~~~d---~~~~lkp~----l~~g~l~~Ig 312 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK---ADGAMD---AGNMLKPA----LARGELHCVG 312 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCC---Cccchh---HHHHhcch----hhcCCCeEEE
Confidence 8765 34777777888899988654 5678999999999975432 112111 22223222 3467899999
Q ss_pred ccCCCC-----CCCccCCCCCcccccccCCCCChhhHHHHHHHHHcc
Q 002754 562 STNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (884)
Q Consensus 562 tTN~~~-----~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~ 603 (884)
+|+..+ .+|+++.| ||+ .|.++.|+.+++..|++.....
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 998876 48999999 998 6889999999999999876543
No 124
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=2.3e-10 Score=129.75 Aligned_cols=209 Identities=21% Similarity=0.278 Sum_probs=134.5
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecchh-h--
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF-V-- 488 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~-~-- 488 (884)
..+..|+++.|....+..+.+.+.. -.++.+++|+||+|+|||+++++++..+..+........+ .
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 4567888888888777555554431 1345679999999999999999999987542211111000 0
Q ss_pred ---hhhccccchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEe
Q 002754 489 ---EIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIA 561 (884)
Q Consensus 489 ---~~~~g~~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIa 561 (884)
+.........++.+++.+... .+.++++||++.+... .++.|+..++. ...++++|.
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~~ll~~le~--~~~~~~~Il 143 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFNAFLKTLEE--PPAHAIFIL 143 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHHHHHHHHhC--CCCceEEEE
Confidence 000011123455666655432 3469999999877543 56777777764 344566666
Q ss_pred ccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 002754 562 STNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMR 640 (884)
Q Consensus 562 tTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~ 640 (884)
+|+.+..+.+++.+ |+. .+.|++|+.++...++...+...+.. ++..+..++..+.| +.+.+.+.++.....+
T Consensus 144 ~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~-- 217 (367)
T PRK14970 144 ATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC-- 217 (367)
T ss_pred EeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc--
Confidence 67777888888887 543 68999999999999998877665542 34446667776654 5555556666554332
Q ss_pred hCCCccCHHHHHHHH
Q 002754 641 DGRTEITTDDLLQAA 655 (884)
Q Consensus 641 ~~~~~It~edi~~Al 655 (884)
+.. ||.+++...+
T Consensus 218 -~~~-it~~~v~~~~ 230 (367)
T PRK14970 218 -GKN-ITRQAVTENL 230 (367)
T ss_pred -CCC-CCHHHHHHHh
Confidence 333 8888887665
No 125
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=3.1e-10 Score=135.23 Aligned_cols=211 Identities=19% Similarity=0.194 Sum_probs=143.5
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeeee-------
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS------- 483 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is------- 483 (884)
+..+..|+++.|.+..+..+.+.+.. .+++.++||+||+|+||||+|+++|..+.......+
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 34567899999988888776665541 245677999999999999999999998754321111
Q ss_pred cc------hhhhh-h-----c----cccchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHH
Q 002754 484 AS------QFVEI-Y-----V----GVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (884)
Q Consensus 484 ~s------~~~~~-~-----~----g~~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~ 543 (884)
|+ .+... + + ..+...++.+.+.+... .+.|++|||++.+... .++.
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~--------------a~na 151 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA--------------AFNA 151 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH--------------HHHH
Confidence 10 00000 0 0 01123356666665432 3569999999888543 6888
Q ss_pred HHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCC-cccHHHHHhhCCCC
Q 002754 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGM 622 (884)
Q Consensus 544 LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~-didl~~lA~~t~G~ 622 (884)
|+..|+. ...+++||.+|+.++.+.+.+++ |+. .+.|..|+.++....+...+...+..- +..+..++..+.|
T Consensus 152 LLKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G- 225 (598)
T PRK09111 152 LLKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG- 225 (598)
T ss_pred HHHHHHh--CCCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9988884 44567777777777888888888 653 799999999999999998887655432 2345666776655
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 623 s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
+.+++.++++.+... +...||.+++...+.
T Consensus 226 dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 226 SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 677777887776533 234699999887653
No 126
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.17 E-value=2.3e-10 Score=121.89 Aligned_cols=178 Identities=15% Similarity=0.147 Sum_probs=111.5
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhc---cceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCC
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~---~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~ 528 (884)
..++|+||+|||||+|+.+++..+. ....+++....... ...+.+.... .++++|||++.+...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~--- 112 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGD--- 112 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcCC---
Confidence 3589999999999999999998653 33444544432211 1122222222 358999999987432
Q ss_pred CCCCCchhHHHHHHHHHHhhccccCCCc-eEEEeccCCCCC---CCccCCCCCccc--ccccCCCCChhhHHHHHHHHHc
Q 002754 529 IKGSGGQERDATLNQLLVCLDGFEGRGN-VITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHAR 602 (884)
Q Consensus 529 ~~~Sgge~~~~~l~~LL~~ld~~~~~~~-VlVIatTN~~~~---LdpaLlr~gRfd--~~I~~~~P~~eeR~~Il~~~l~ 602 (884)
......+..++..+ ...++ .+++++++.|.. +.|.|.+ |+. .++.+.+|+.+++.++++..+.
T Consensus 113 ------~~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 113 ------ELWEMAIFDLYNRI---LESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred ------HHHHHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 11222232333222 22333 455666666655 5789988 774 7889999999999999998666
Q ss_pred cCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 603 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 603 ~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
..++. ++.-+..++.+..| +.+.+..+++.....+.. ....||.+.+.+++
T Consensus 182 ~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 182 LRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASIT-AQRKLTIPFVKEIL 233 (235)
T ss_pred HcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHH
Confidence 54443 33335667777664 566677777775433333 33459999888775
No 127
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.17 E-value=2.9e-10 Score=120.24 Aligned_cols=174 Identities=14% Similarity=0.124 Sum_probs=112.2
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcC
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~ 527 (884)
..+++|+||+|||||+|+++++... +.++..+++..+... +. ....+++++|||++.+...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~~-- 105 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLDDA-- 105 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcCch--
Confidence 3469999999999999999999865 557777777654321 11 1123568999999876422
Q ss_pred CCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCC-CC--CCCccCCCCCcc--cccccCCCCChhhHHHHHHHHHc
Q 002754 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR-PD--ILDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHAR 602 (884)
Q Consensus 528 ~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~-~~--~LdpaLlr~gRf--d~~I~~~~P~~eeR~~Il~~~l~ 602 (884)
....|+..++........++|.+++. +. .+.+.+.+ || ...|.+++|+.+++..++.....
T Consensus 106 ------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 106 ------------QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred ------------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 22334444443333444334444433 21 24466666 66 46899999999999899887765
Q ss_pred cCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 603 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 603 ~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
..++. ++.-+..++.. .+-+.+++.++++.-...|...+ ..||...+.+++.
T Consensus 172 ~~~v~l~~~al~~L~~~-~~gn~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 172 ERGLQLADEVPDYLLTH-FRRDMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 54433 22335666664 44567788888887554454444 5799999988764
No 128
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.17 E-value=5.9e-10 Score=119.19 Aligned_cols=181 Identities=22% Similarity=0.213 Sum_probs=123.6
Q ss_pred cccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc----ee--ee
Q 002754 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----FF--SI 482 (884)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~----~~--~i 482 (884)
.++..+..|++..|.+.++..+.+.+.. . +-..+||+||||||||+.++++|.++..+ .+ ..
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 4566788899999988888777776653 1 12238999999999999999999988541 11 11
Q ss_pred ecchhhhhhccccchhhhhHHHHHHhc----------CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc
Q 002754 483 SASQFVEIYVGVGASRVRSLYQEAKDN----------APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE 552 (884)
Q Consensus 483 s~s~~~~~~~g~~~~~l~~lf~~a~~~----------~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~ 552 (884)
+.+......+ ...++ .-|.+.... ++-|++|||.|.+..+ +++.|...|+.+
T Consensus 95 naSderGisv--vr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--------------aq~aLrr~mE~~- 156 (346)
T KOG0989|consen 95 NASDERGISV--VREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--------------AQAALRRTMEDF- 156 (346)
T ss_pred cccccccccc--hhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHH--------------HHHHHHHHHhcc-
Confidence 2222111111 11111 123332211 1269999999999766 888999999953
Q ss_pred CCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCc-ccHHHHHhhCCCCC
Q 002754 553 GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMV 623 (884)
Q Consensus 553 ~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~d-idl~~lA~~t~G~s 623 (884)
...+.||..||.++.|++.+.+ |.. .+.|++...+.....|+....+-++.-+ ..+..++..+.|--
T Consensus 157 -s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 157 -SRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDL 224 (346)
T ss_pred -ccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH
Confidence 4577888889999999999998 665 7888888888888888877766555433 33666777776643
No 129
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.16 E-value=2.1e-10 Score=126.25 Aligned_cols=138 Identities=16% Similarity=0.149 Sum_probs=97.7
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhh--hccccchh------h----hhHHHHHHhcCCcEEEhhh
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGASR------V----RSLYQEAKDNAPSVVFIDE 518 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~--~~g~~~~~------l----~~lf~~a~~~~p~Il~iDE 518 (884)
.++++|.||||||||++++.||..++.++++++++..... .+|...-. . ...+-.+. ..++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEech
Confidence 4569999999999999999999999999999998876655 44432110 0 11222333 3456899999
Q ss_pred HHHhhhhcCCCCCCCchhHHHHHHHHHHh-----hcc----ccCCCceEEEeccCCCC------------CCCccCCCCC
Q 002754 519 LDAVGRERGLIKGSGGQERDATLNQLLVC-----LDG----FEGRGNVITIASTNRPD------------ILDPALVRPG 577 (884)
Q Consensus 519 Id~l~~~r~~~~~Sgge~~~~~l~~LL~~-----ld~----~~~~~~VlVIatTN~~~------------~LdpaLlr~g 577 (884)
++...++ ....++.+|.. +.+ +....++.||+|+|..+ .++.+++.
T Consensus 143 in~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 9987544 12244445442 111 12335788999999854 36889998
Q ss_pred cccccccCCCCChhhHHHHHHHHHc
Q 002754 578 RFDRKIFIPKPGLIGRMEILKVHAR 602 (884)
Q Consensus 578 Rfd~~I~~~~P~~eeR~~Il~~~l~ 602 (884)
||-.++.++.|+.++-.+|+.....
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9988889999999999999987653
No 130
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.16 E-value=3.1e-10 Score=131.52 Aligned_cols=209 Identities=21% Similarity=0.278 Sum_probs=148.3
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccce-------eee--
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-------FSI-- 482 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~-------~~i-- 482 (884)
.++..|+++.|...++..+.+++.. -++..+.+|+||.||||||+||.+|..+++.- +.+
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 3677899999988888777776653 24456689999999999999999999775432 111
Q ss_pred ----ecchhhhh-----hccccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhc
Q 002754 483 ----SASQFVEI-----YVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (884)
Q Consensus 483 ----s~s~~~~~-----~~g~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld 549 (884)
+-+.+.+. -...+...++.+.+.+.. ..+.|.+|||++-+... .+|.||..++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~--------------afNALLKTLE 144 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ--------------AFNALLKTLE 144 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH--------------HHHHHhcccc
Confidence 11111110 011122345666666543 34679999999888654 8999999999
Q ss_pred cccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCccc-HHHHHhhCCCCCHHHHH
Q 002754 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD-YLAVASMTDGMVGAELA 628 (884)
Q Consensus 550 ~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~did-l~~lA~~t~G~s~adL~ 628 (884)
.+..+|+||.+|..++.+++.+++ |.. ++.|...+.++....+...+.+.++.-+.+ +..+++...| +.+|..
T Consensus 145 --EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDal 218 (515)
T COG2812 145 --EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDAL 218 (515)
T ss_pred --cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHH
Confidence 677899999999999999999999 543 788888999999999998887766654433 5666676665 667888
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 629 NIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 629 ~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
.+++.|.... ...||.+.+...+
T Consensus 219 slLDq~i~~~----~~~It~~~v~~~l 241 (515)
T COG2812 219 SLLDQAIAFG----EGEITLESVRDML 241 (515)
T ss_pred HHHHHHHHcc----CCcccHHHHHHHh
Confidence 9999886432 2456666665543
No 131
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.15 E-value=6.6e-10 Score=123.99 Aligned_cols=134 Identities=22% Similarity=0.214 Sum_probs=94.1
Q ss_pred CcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc-----------CCCceEEEeccCCCC-CCCccCCCCCc
Q 002754 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-ILDPALVRPGR 578 (884)
Q Consensus 511 p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~~-~LdpaLlr~gR 578 (884)
.+++|+||++.+... ++..|+..|+.-. ....+++|+++|..+ .++++++. |
T Consensus 132 ~GvL~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--R 195 (337)
T TIGR02030 132 RGILYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--R 195 (337)
T ss_pred CCEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--h
Confidence 469999999987554 6667777665321 124588889988765 68899999 9
Q ss_pred ccccccCCCCCh-hhHHHHHHHHHccC-------------------------------CCCCcc--cHHHHHhhCCCCCH
Q 002754 579 FDRKIFIPKPGL-IGRMEILKVHARKK-------------------------------PMADDV--DYLAVASMTDGMVG 624 (884)
Q Consensus 579 fd~~I~~~~P~~-eeR~~Il~~~l~~~-------------------------------~~~~di--dl~~lA~~t~G~s~ 624 (884)
|...+.++.|.. ++|.+|++...... .+.+.+ .+..++..+..-+.
T Consensus 196 f~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~ 275 (337)
T TIGR02030 196 FGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGL 275 (337)
T ss_pred cceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCC
Confidence 999999998875 88889988743210 011110 12333344433344
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHc
Q 002754 625 AELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 660 (884)
Q Consensus 625 adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~ 660 (884)
+.-..+++.|...|..+|+..|+.+|+..++..+..
T Consensus 276 Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 276 RGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 555589999999999999999999999999886644
No 132
>PRK08727 hypothetical protein; Validated
Probab=99.15 E-value=3.1e-10 Score=120.87 Aligned_cols=178 Identities=22% Similarity=0.285 Sum_probs=111.9
Q ss_pred cEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCC
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 529 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~ 529 (884)
.++|+||+|||||+|+.+++..+ +....++++.++... +...++.. ....+++|||++.+....
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l--~~~dlLiIDDi~~l~~~~--- 109 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEAL--EGRSLVALDGLESIAGQR--- 109 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHH--hcCCEEEEeCcccccCCh---
Confidence 38999999999999999998765 445556665443221 22334433 245699999998774321
Q ss_pred CCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC---CccCCCCCcc--cccccCCCCChhhHHHHHHHHHccC
Q 002754 530 KGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL---DPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARKK 604 (884)
Q Consensus 530 ~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L---dpaLlr~gRf--d~~I~~~~P~~eeR~~Il~~~l~~~ 604 (884)
.....+-.++ +.....+.-+|+.+.+.|..+ +|.+.+ || ..++.+++|+.+++..|++.++...
T Consensus 110 ------~~~~~lf~l~---n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 110 ------EDEVALFDFH---NRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred ------HHHHHHHHHH---HHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 1111222333 332223333455555566654 688888 76 5678999999999999999877544
Q ss_pred CCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 605 PMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 605 ~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
++. ++..+..++..+.|- .+.+.++++.....+...++ .||.+.+.+.+.
T Consensus 179 ~l~l~~e~~~~La~~~~rd-~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l~ 229 (233)
T PRK08727 179 GLALDEAAIDWLLTHGERE-LAGLVALLDRLDRESLAAKR-RVTVPFLRRVLE 229 (233)
T ss_pred CCCCCHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHh
Confidence 442 333467778777643 33344556655544444444 699999988775
No 133
>PRK05642 DNA replication initiation factor; Validated
Probab=99.15 E-value=5.3e-10 Score=119.09 Aligned_cols=178 Identities=16% Similarity=0.201 Sum_probs=116.7
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCC
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~ 528 (884)
..++|+||+|+|||+|++++++++ +...++++..++...+ ..+.+.... .++++||+++.+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 458999999999999999998754 4566777776655321 123333332 3589999998774321
Q ss_pred CCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCC---CCccCCCCCcc--cccccCCCCChhhHHHHHHHHHcc
Q 002754 529 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARK 603 (884)
Q Consensus 529 ~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~---LdpaLlr~gRf--d~~I~~~~P~~eeR~~Il~~~l~~ 603 (884)
. ....|+..++.+...+..+||+++..|.. ..|.|.+ || ..++.+.+|+.+++..+++..+..
T Consensus 114 -------~---~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 114 -------D---WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred -------H---HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1 12334444444445556677777765543 3688888 77 467788999999999999966655
Q ss_pred CCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 604 KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 604 ~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
.++. ++.-+..++.... -+.+.+..+++.-...+.. ....||..-+.+++
T Consensus 182 ~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGT-RSMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 4442 2333555666655 4667777877766543333 33468988887765
No 134
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.14 E-value=2.6e-10 Score=142.17 Aligned_cols=175 Identities=23% Similarity=0.379 Sum_probs=123.2
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh----------ccceeeeecchhh--hhhccccchhhhhHHHHHHhc-CCcEEEhhh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFV--EIYVGVGASRVRSLYQEAKDN-APSVVFIDE 518 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~--~~~~g~~~~~l~~lf~~a~~~-~p~Il~iDE 518 (884)
.+++|+||||||||++++.||..+ +.+++.++++.+. ..|.|.....+..++..+... .++|+||||
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDE 274 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDE 274 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 347899999999999999999875 5567788877765 347777777888899888653 588999999
Q ss_pred HHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCC-----CCCccCCCCCcccccccCCCCChhhH
Q 002754 519 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGR 593 (884)
Q Consensus 519 Id~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~-----~LdpaLlr~gRfd~~I~~~~P~~eeR 593 (884)
++.+.+.+. +.|. ....+.|... ..++.+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++
T Consensus 275 ih~l~~~g~----~~~~--~d~~~~Lk~~----l~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~ 341 (852)
T TIGR03346 275 LHTLVGAGK----AEGA--MDAGNMLKPA----LARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDT 341 (852)
T ss_pred HHHhhcCCC----Ccch--hHHHHHhchh----hhcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHH
Confidence 999875321 1111 1123333322 3467789998888763 47999999 997 689999999999
Q ss_pred HHHHHHHHccCCCC-----CcccHHHHHhhCCCC-----CHHHHHHHHHHHHHHHH
Q 002754 594 MEILKVHARKKPMA-----DDVDYLAVASMTDGM-----VGAELANIVEVAAINMM 639 (884)
Q Consensus 594 ~~Il~~~l~~~~~~-----~didl~~lA~~t~G~-----s~adL~~Lv~~A~~~A~ 639 (884)
..|++......... .+..+...+..+.+| -|.-...++++|+....
T Consensus 342 ~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~ 397 (852)
T TIGR03346 342 ISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIR 397 (852)
T ss_pred HHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHH
Confidence 99998775544322 233345555555544 45555688888876543
No 135
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=4.2e-10 Score=128.96 Aligned_cols=214 Identities=17% Similarity=0.230 Sum_probs=136.5
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceee---------
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--------- 481 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~--------- 481 (884)
+.++..|+++.|.+.++..+...+. +-+++..++|+||+|+||||+|+++|..+......
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 3456788899888877766655443 12456679999999999999999999987542100
Q ss_pred -eecch------hh-----hh--hccc---cchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHH
Q 002754 482 -ISASQ------FV-----EI--YVGV---GASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDAT 540 (884)
Q Consensus 482 -is~s~------~~-----~~--~~g~---~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~ 540 (884)
-.|+. +. +. +-+. ....++.+.+.+.. ....|++|||++.+... .
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~--------------~ 143 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA--------------A 143 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH--------------H
Confidence 01110 00 00 0111 11234444444432 22458999999888543 5
Q ss_pred HHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCC-CCcccHHHHHhhC
Q 002754 541 LNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMT 619 (884)
Q Consensus 541 l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~-~~didl~~lA~~t 619 (884)
++.|+..++. ....+++|.+|+.+..+.+.+.+ |.. ++.|.+++.++....+...+...+. .++..+..++..+
T Consensus 144 ~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 144 FNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6778888773 34456666666667788888887 654 8999999999988888887765443 2334456677776
Q ss_pred CCCCHHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 002754 620 DGMVGAELANIVEVAAINMMR-DGRTEITTDDLLQAA 655 (884)
Q Consensus 620 ~G~s~adL~~Lv~~A~~~A~~-~~~~~It~edi~~Al 655 (884)
.| +.+.+.+.++.+...+.. .....||.+++.+.+
T Consensus 219 ~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 219 QG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 54 556666667666544422 234579998888765
No 136
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=3.7e-10 Score=132.32 Aligned_cols=210 Identities=19% Similarity=0.208 Sum_probs=139.7
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccce-------eee-
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-------FSI- 482 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~-------~~i- 482 (884)
+.++..|+++.|.+.++..+...+.. ..++..+||+||+|+|||++++++|..+...- +.+
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34677899999988888777665541 23566689999999999999999998763211 000
Q ss_pred ecchhh-----hhhccc-----cchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhh
Q 002754 483 SASQFV-----EIYVGV-----GASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (884)
Q Consensus 483 s~s~~~-----~~~~g~-----~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~l 548 (884)
+|.... ..+.+. +...++.+.+..... ...|++|||++.+... .++.|+..|
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~--------------A~NALLK~L 141 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE--------------AFNALLKTL 141 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH--------------HHHHHHHHH
Confidence 000000 000000 112344444443222 2358999999887544 788899999
Q ss_pred ccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHH
Q 002754 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (884)
Q Consensus 549 d~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL 627 (884)
+. ...++.+|.+|+.+..+.+++++ |. .+++|.+++.++....+...+...+.. ++..+..++..+.| +.+++
T Consensus 142 EE--pp~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~a 215 (535)
T PRK08451 142 EE--PPSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDT 215 (535)
T ss_pred hh--cCCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHH
Confidence 85 35567777777778999999998 64 488999999999988888877665443 33446667777665 77777
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 628 ANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 628 ~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
.+++..+...+ ...||.+++...+
T Consensus 216 lnlLdqai~~~----~~~It~~~V~~~l 239 (535)
T PRK08451 216 LTLLDQAIIYC----KNAITESKVADML 239 (535)
T ss_pred HHHHHHHHHhc----CCCCCHHHHHHHh
Confidence 78887776443 3458888777653
No 137
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.13 E-value=4.5e-10 Score=125.13 Aligned_cols=217 Identities=20% Similarity=0.284 Sum_probs=131.4
Q ss_pred ccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhcc---------ceeeeec
Q 002754 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV---------NFFSISA 484 (884)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~---------~~~~is~ 484 (884)
.+.|.++.|....+..+.-.. + ++ | .+++||.|+||+||||+++++++.+.. .+..+.+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~--~-~~------~---~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTA--I-DP------G---IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHH--h-cc------C---CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 456777777777664443211 1 00 0 145999999999999999999998732 1111111
Q ss_pred c----------------hhhhhhccccchhh-hh-HHHHH-------------HhcCCcEEEhhhHHHhhhhcCCCCCCC
Q 002754 485 S----------------QFVEIYVGVGASRV-RS-LYQEA-------------KDNAPSVVFIDELDAVGRERGLIKGSG 533 (884)
Q Consensus 485 s----------------~~~~~~~g~~~~~l-~~-lf~~a-------------~~~~p~Il~iDEId~l~~~r~~~~~Sg 533 (884)
. .+.....+.+...+ +. .++.. .....+++++||++.+...
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~-------- 143 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH-------- 143 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH--------
Confidence 0 00111111111100 00 01111 1122358999999988654
Q ss_pred chhHHHHHHHHHHhhcccc-----------CCCceEEEeccCCCC-CCCccCCCCCcccccccCCCCCh-hhHHHHHHHH
Q 002754 534 GQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-ILDPALVRPGRFDRKIFIPKPGL-IGRMEILKVH 600 (884)
Q Consensus 534 ge~~~~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~~-~LdpaLlr~gRfd~~I~~~~P~~-eeR~~Il~~~ 600 (884)
+++.|+..|+... ....+++|+++|..+ .++++++. ||...|.+++|.. ++|.+|+...
T Consensus 144 ------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 144 ------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 6677777775321 235688999999755 58889988 9999999998876 8899999875
Q ss_pred HccCC----C------C--------------------Cccc---HHHHHhhCC-CCCHHHHHHHHHHHHHHHHHhCCCcc
Q 002754 601 ARKKP----M------A--------------------DDVD---YLAVASMTD-GMVGAELANIVEVAAINMMRDGRTEI 646 (884)
Q Consensus 601 l~~~~----~------~--------------------~did---l~~lA~~t~-G~s~adL~~Lv~~A~~~A~~~~~~~I 646 (884)
..... + . ++.. +..++..+. .-..+++. +++.|...|..+|+..|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V 294 (334)
T PRK13407 216 DAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAV 294 (334)
T ss_pred hcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCee
Confidence 32110 0 0 0100 122222222 23566665 99999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 002754 647 TTDDLLQAAQIEE 659 (884)
Q Consensus 647 t~edi~~Al~~~~ 659 (884)
+.+|+..+...+.
T Consensus 295 ~~~Di~~~~~~vl 307 (334)
T PRK13407 295 GRSHLRSVATMAL 307 (334)
T ss_pred CHHHHHHHHHHhh
Confidence 9999988875443
No 138
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.12 E-value=2.4e-10 Score=128.99 Aligned_cols=270 Identities=17% Similarity=0.204 Sum_probs=166.2
Q ss_pred EEEECCCCCCchhHHHHhhhhh---cc--ceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCC
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEA---GV--NFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~--~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~ 528 (884)
++|+||.|+|||+|++++++.. ++ .++.++...|...++......-..-|.... .-++++||+++.+.+..
T Consensus 116 lfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~-- 191 (408)
T COG0593 116 LFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE-- 191 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh--
Confidence 8999999999999999999865 33 466677666655544222111112233322 45689999999886542
Q ss_pred CCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC---CccCCCCCccc--ccccCCCCChhhHHHHHHHHHcc
Q 002754 529 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL---DPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARK 603 (884)
Q Consensus 529 ~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L---dpaLlr~gRfd--~~I~~~~P~~eeR~~Il~~~l~~ 603 (884)
. ....|...+..+...++.+|+.+...|..+ .|.|.+ ||. .++.+.+|+.+.|..|++.....
T Consensus 192 -------~---~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 192 -------R---TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred -------h---HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 1 233333333443455567777777777654 478877 775 46688999999999999997766
Q ss_pred CCCCCccc-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCCccccccchhhhHHHHHHHHH
Q 002754 604 KPMADDVD-YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINEAA 682 (884)
Q Consensus 604 ~~~~~did-l~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~g~~~~~~~~~~~~~~vA~hEaG 682 (884)
.++.-+.+ ...++... .-+.++|..+++.....+...++ .||.+.+.+++....... + + +.+..+-
T Consensus 260 ~~~~i~~ev~~~la~~~-~~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~~---------~-~-itie~I~ 326 (408)
T COG0593 260 RGIEIPDEVLEFLAKRL-DRNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRAG---------E-K-ITIEDIQ 326 (408)
T ss_pred cCCCCCHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhccc---------c-c-CCHHHHH
Confidence 55543333 44455544 35788899999888877776666 799999999998765441 1 3 5566666
Q ss_pred HHHHHHhCCCCCCcceeeecCCCCCcccceeeccccccccccccCHHHHHHHHHHhhhhhhHHHHHcCCCcccccccch
Q 002754 683 MAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAET 761 (884)
Q Consensus 683 hAvva~ll~~~~~v~~vsI~pr~g~~lG~~~~~~~e~~~~~~~~Tr~~l~~~I~v~LaGRAAEel~fG~~~~stga~~D 761 (884)
+.|+.++--....+..-+-......+...++|...+ +|-.+ +.+|+-.+| |-+-.|++....++..-.+|
T Consensus 327 ~~Va~~y~v~~~dl~s~~R~~~i~~~RqiamyL~r~-------lt~~S-lp~IG~~Fg-rdHtTV~~a~~kI~~~~~~d 396 (408)
T COG0593 327 KIVAEYYNVKVSDLLSKSRTRNIVRPRQIAMYLARE-------LTNLS-LPEIGKAFG-RDHTTVLHAVRKIEQLIEED 396 (408)
T ss_pred HHHHHHhCCCHHHhhccccccccchHHHHHHHHHHH-------HccCc-HHHHHHHhC-CCccHHHHHHHHHHHHHhcC
Confidence 777666543322222111111111111333333332 12112 456888888 88888888764444333333
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=5.6e-10 Score=132.52 Aligned_cols=209 Identities=18% Similarity=0.211 Sum_probs=139.8
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc-------eeee-e
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSI-S 483 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~-------~~~i-s 483 (884)
.++..|+++.|.+.++..+.+.+.. -.++..++|+||+|+|||++|+++|..+... .+.+ +
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 3567899999988888777665542 1345669999999999999999999987532 1111 0
Q ss_pred cchh-----hhh--hccc---cchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhc
Q 002754 484 ASQF-----VEI--YVGV---GASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (884)
Q Consensus 484 ~s~~-----~~~--~~g~---~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld 549 (884)
|-.+ .+. +-|. ....++.+.+.+.. ..+.|++|||++.+... .++.|+..++
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~--------------a~naLLK~LE 144 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS--------------AFNALLKTIE 144 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH--------------HHHHHHHhhc
Confidence 0000 000 0111 11233444433332 34569999999887543 6788998888
Q ss_pred cccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHH
Q 002754 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELA 628 (884)
Q Consensus 550 ~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~ 628 (884)
. ...++++|.+|+.+..+.+++++ |+. .+.|.+++.++...+++..+...+.. ++..+..++..+.| +.+++.
T Consensus 145 e--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~al 218 (563)
T PRK06647 145 E--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAY 218 (563)
T ss_pred c--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 3 45677888777778889999988 655 68899999999999998877655433 33446667777665 677777
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 629 NIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 629 ~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
++++.+...+ ...||.+++..++
T Consensus 219 slLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 219 TLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHhhc----CCCCCHHHHHHHh
Confidence 8877665332 2458888887764
No 140
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.10 E-value=1.1e-10 Score=131.35 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=60.7
Q ss_pred CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcc--------ccCCCceEEEecc----CCCCCCCccCCCCC
Q 002754 510 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG--------FEGRGNVITIAST----NRPDILDPALVRPG 577 (884)
Q Consensus 510 ~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~--------~~~~~~VlVIatT----N~~~~LdpaLlr~g 577 (884)
..+|+||||||++...... .+.+-...-+...||..+++ ..+..+++||++. ..|+.+=|+|..
T Consensus 247 ~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G-- 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG-- 322 (441)
T ss_pred cCCEEEEEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--
Confidence 3469999999999765321 11111222377788888887 2345789999776 235566778865
Q ss_pred cccccccCCCCChhhHHHHHH
Q 002754 578 RFDRKIFIPKPGLIGRMEILK 598 (884)
Q Consensus 578 Rfd~~I~~~~P~~eeR~~Il~ 598 (884)
||+.++.+.+++.++..+||.
T Consensus 323 R~Pi~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 323 RFPIRVELQALTTDDFERILT 343 (441)
T ss_pred ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999999883
No 141
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=1.2e-09 Score=126.81 Aligned_cols=209 Identities=18% Similarity=0.250 Sum_probs=135.8
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccce--------ee-e
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--------FS-I 482 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~--------~~-i 482 (884)
.++..|+++.|.+.++..+.+.+.. -.++..+||+||+|+|||++|+++|..+.... +. .
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 3567899999988888766665542 23466799999999999999999998764321 00 0
Q ss_pred ecchhh-----hh--hccc---cchhhhhHHHHHH----hcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhh
Q 002754 483 SASQFV-----EI--YVGV---GASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (884)
Q Consensus 483 s~s~~~-----~~--~~g~---~~~~l~~lf~~a~----~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~l 548 (884)
+|..+. .. +-|. +...++.+.+.+. ...+.|++|||+|.+... ..+.|+..|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~--------------~~n~LLk~l 145 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE--------------AFNSLLKTL 145 (451)
T ss_pred HHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH--------------HHHHHHHHh
Confidence 000000 00 0111 1122333333222 234679999999988543 578888888
Q ss_pred ccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHH
Q 002754 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (884)
Q Consensus 549 d~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL 627 (884)
+. ...++++|.+||.+..+.+.+.+ |+. .+.|++++.++....+...+...+.. ++..+..++..+.| +.+++
T Consensus 146 Ee--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a 219 (451)
T PRK06305 146 EE--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDA 219 (451)
T ss_pred hc--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 85 34577777777888889999988 654 78999999999999888877655432 33446677777754 44555
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 628 ANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 628 ~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
.++++..... .+ ..|+.+++..++
T Consensus 220 ~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 220 ESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 5555544322 23 349999887665
No 142
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=1.6e-09 Score=129.99 Aligned_cols=210 Identities=18% Similarity=0.213 Sum_probs=135.1
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceee---eecc--
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---ISAS-- 485 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~---is~s-- 485 (884)
+.....|+++.|.+.++..+.+.+.. -.++..+||+||+|+||||+++++|..+...... ..|+
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 34677899999998888776655442 1244558999999999999999999887532110 0010
Q ss_pred ----hhhhh----h--c----cccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHh
Q 002754 486 ----QFVEI----Y--V----GVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVC 547 (884)
Q Consensus 486 ----~~~~~----~--~----g~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ 547 (884)
.+... + + ......++.+.+.+.. ....|++|||++.+... .++.|+..
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~--------------a~naLLk~ 143 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTA--------------AFNALLKT 143 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH--------------HHHHHHHH
Confidence 00000 0 0 0111223444433332 23469999999987543 67888888
Q ss_pred hccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHH
Q 002754 548 LDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAE 626 (884)
Q Consensus 548 ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~ad 626 (884)
++. ...+++||.+++..+.+.+.+.+ |+. .+.|..++..+...++...+...++. ++..+..++..+.| +.++
T Consensus 144 LEe--pp~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~ 217 (585)
T PRK14950 144 LEE--PPPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRD 217 (585)
T ss_pred Hhc--CCCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 884 33566777667777778888877 554 78899999999999888877665442 23346677777765 6777
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 627 LANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 627 L~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
+.++++..... +...||.+++...+
T Consensus 218 al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 218 AENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 77777654332 23468988877654
No 143
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=1.2e-09 Score=130.39 Aligned_cols=213 Identities=17% Similarity=0.232 Sum_probs=136.3
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceee----------
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---------- 481 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~---------- 481 (884)
.++..|+++.|...++..+.+.+. +-+++.++||+||+|+||||+|+.+|..+......
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 356788899898877766665433 12556779999999999999999999987552100
Q ss_pred eecch------hh-----hh--hcccc---chhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHH
Q 002754 482 ISASQ------FV-----EI--YVGVG---ASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATL 541 (884)
Q Consensus 482 is~s~------~~-----~~--~~g~~---~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l 541 (884)
-.|+. +. +. +.+.. ...++.+.+.+.. ....|++|||+|.+... .+
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~--------------a~ 144 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA--------------AF 144 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH--------------HH
Confidence 01110 00 00 11111 1234445444422 23459999999888543 57
Q ss_pred HHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCC-CCcccHHHHHhhCC
Q 002754 542 NQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTD 620 (884)
Q Consensus 542 ~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~-~~didl~~lA~~t~ 620 (884)
+.|+..|+. ....+++|.+|+.+..+.+.+.+ |. ..+.|.+++.++....+...+...+. .++..+..++..+.
T Consensus 145 naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 145 NAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 888888884 34556666666667888888888 44 38999999999988888877765443 23445667777776
Q ss_pred CCCHHHHHHHHHHHHHHHH-HhCCCccCHHHHHHHH
Q 002754 621 GMVGAELANIVEVAAINMM-RDGRTEITTDDLLQAA 655 (884)
Q Consensus 621 G~s~adL~~Lv~~A~~~A~-~~~~~~It~edi~~Al 655 (884)
| +.+++.+.++.....+. ......||.+++.+.+
T Consensus 220 G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 220 G-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred C-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 5 55555566665544331 1224568888887665
No 144
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.08 E-value=1.2e-09 Score=121.97 Aligned_cols=221 Identities=20% Similarity=0.233 Sum_probs=135.4
Q ss_pred cccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhcc-------ceeeee--
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------NFFSIS-- 483 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~-------~~~~is-- 483 (884)
..+.|.++.|.++.+..+.... .++ -.+|++|.|++||||||++++++..+.. +|....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~---~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNV---IDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhc---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 4567888888887775553222 121 1256999999999999999999876531 221000
Q ss_pred ----cc-------------------hhhhhhccccchhh------hhHHHHH---------HhcCCcEEEhhhHHHhhhh
Q 002754 484 ----AS-------------------QFVEIYVGVGASRV------RSLYQEA---------KDNAPSVVFIDELDAVGRE 525 (884)
Q Consensus 484 ----~s-------------------~~~~~~~g~~~~~l------~~lf~~a---------~~~~p~Il~iDEId~l~~~ 525 (884)
++ .++..-.|.....+ ...|... .....+++++||++.+...
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~ 159 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH 159 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH
Confidence 00 00000011111110 0011100 1122469999999988655
Q ss_pred cCCCCCCCchhHHHHHHHHHHhhccc-----------cCCCceEEEeccCCCC-CCCccCCCCCcccccccCCCCC-hhh
Q 002754 526 RGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGNVITIASTNRPD-ILDPALVRPGRFDRKIFIPKPG-LIG 592 (884)
Q Consensus 526 r~~~~~Sgge~~~~~l~~LL~~ld~~-----------~~~~~VlVIatTN~~~-~LdpaLlr~gRfd~~I~~~~P~-~ee 592 (884)
+...|+..|+.. .....+++|+|.|..+ .++++++. ||...|.+..|+ .+.
T Consensus 160 --------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~ 223 (350)
T CHL00081 160 --------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPEL 223 (350)
T ss_pred --------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHH
Confidence 566677666531 1134688889888765 58999999 999999999997 588
Q ss_pred HHHHHHHHHccC--CC----------------------------CCccc---HHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 002754 593 RMEILKVHARKK--PM----------------------------ADDVD---YLAVASMTDGMVGAELANIVEVAAINMM 639 (884)
Q Consensus 593 R~~Il~~~l~~~--~~----------------------------~~did---l~~lA~~t~G~s~adL~~Lv~~A~~~A~ 639 (884)
+.+|++...... +. .++.. +..++..+.--+++--..+++.|...|.
T Consensus 224 e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aa 303 (350)
T CHL00081 224 RVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAA 303 (350)
T ss_pred HHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHH
Confidence 999998753210 00 00101 2223333332344444588899999999
Q ss_pred HhCCCccCHHHHHHHHHHHHcC
Q 002754 640 RDGRTEITTDDLLQAAQIEERG 661 (884)
Q Consensus 640 ~~~~~~It~edi~~Al~~~~~g 661 (884)
.+|+..|+.+|+..++..+...
T Consensus 304 l~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 304 FEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998876543
No 145
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.07 E-value=3.3e-10 Score=127.77 Aligned_cols=85 Identities=26% Similarity=0.380 Sum_probs=61.1
Q ss_pred CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcc--------ccCCCceEEEecc----CCCCCCCccCCCCC
Q 002754 510 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG--------FEGRGNVITIAST----NRPDILDPALVRPG 577 (884)
Q Consensus 510 ~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~--------~~~~~~VlVIatT----N~~~~LdpaLlr~g 577 (884)
.-+|+||||||++....+.. +.+-...-+...||..+++ ..+..+++||++. ..|+.+-|+|..
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G-- 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG-- 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--
Confidence 34699999999997653211 1111222377788888887 2345789999776 335566788876
Q ss_pred cccccccCCCCChhhHHHHHH
Q 002754 578 RFDRKIFIPKPGLIGRMEILK 598 (884)
Q Consensus 578 Rfd~~I~~~~P~~eeR~~Il~ 598 (884)
||+.++.+.+++.++..+||.
T Consensus 325 R~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 325 RFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999999884
No 146
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.07 E-value=1.8e-09 Score=119.51 Aligned_cols=204 Identities=23% Similarity=0.279 Sum_probs=127.2
Q ss_pred cccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhcc-----ceeeee
Q 002754 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-----NFFSIS 483 (884)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~-----~~~~is 483 (884)
.++..+..|++..|...++..+...+.. . .. .+++|+||+|+|||++++++++.+.. .++.++
T Consensus 8 ~~kyrP~~~~~~~g~~~~~~~l~~~i~~---~--------~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 8 VEKYRPRTLDEIVGQEEIVERLKSYVKE---K--------NM-PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred chhhCCCcHHHhcCcHHHHHHHHHHHhC---C--------CC-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 3445567788888877777666555431 1 11 24899999999999999999998632 233333
Q ss_pred cchhhhhhccccchhhhhHHHH-HHh-----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCce
Q 002754 484 ASQFVEIYVGVGASRVRSLYQE-AKD-----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNV 557 (884)
Q Consensus 484 ~s~~~~~~~g~~~~~l~~lf~~-a~~-----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~V 557 (884)
.+... ....+...+.. +.. ..+.++++||++.+... ....|+..++... .++
T Consensus 76 ~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~--------------~~~~L~~~le~~~--~~~ 133 (319)
T PRK00440 76 ASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD--------------AQQALRRTMEMYS--QNT 133 (319)
T ss_pred ccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH--------------HHHHHHHHHhcCC--CCC
Confidence 32211 01111122211 111 22458999999887433 3445555566433 334
Q ss_pred EEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 002754 558 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAI 636 (884)
Q Consensus 558 lVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~ 636 (884)
.+|.++|.+..+.+++.+ |+. ++.|++|+.++...+++.++...+.. ++..+..++..+.| +.+.+.+.++.+..
T Consensus 134 ~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~ 209 (319)
T PRK00440 134 RFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAA 209 (319)
T ss_pred eEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 556666777777777877 665 68999999999999999888765542 34456777777655 34444455554432
Q ss_pred HHHHhCCCccCHHHHHHHH
Q 002754 637 NMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 637 ~A~~~~~~~It~edi~~Al 655 (884)
. ...||.+++..++
T Consensus 210 ----~-~~~it~~~v~~~~ 223 (319)
T PRK00440 210 ----T-GKEVTEEAVYKIT 223 (319)
T ss_pred ----c-CCCCCHHHHHHHh
Confidence 2 3479999998875
No 147
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=5.7e-10 Score=135.25 Aligned_cols=233 Identities=18% Similarity=0.173 Sum_probs=129.8
Q ss_pred hhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcChhHHHhhc
Q 002754 310 STVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQ 389 (884)
Q Consensus 310 ~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~ 389 (884)
++.+..+ ..+++..|.|+|+.|..+++ ++.....++++.++.++++++..+.+....+.+ .+...+
T Consensus 213 ~d~i~~L-~~G~i~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~-----------~~~a~~ 278 (638)
T PRK10636 213 VDKIIHI-EQQSLFEYTGNYSSFEVQRA--TRLAQQQAMYESQQERVAHLQSYIDRFRAKATK-----------AKQAQS 278 (638)
T ss_pred cCEEEEE-eCCEEEEecCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----------HHHHHH
Confidence 4555666 66889899999999987766 333444555555666666666655432210000 000000
Q ss_pred hhhhHHHHHHHhcCCCCcccccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhH
Q 002754 390 FMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLL 467 (884)
Q Consensus 390 ~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtL 467 (884)
..+....+.+ +. +........+.|+.....++.++.++++...|++...+.++++.+..| +.|+||||+|||||
T Consensus 279 r~~~l~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTL 354 (638)
T PRK10636 279 RIKMLERMEL---IA-PAHVDNPFHFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTL 354 (638)
T ss_pred HHHHHHHhhc---cc-ccccCCceeEecCCCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHH
Confidence 0011111111 00 000012233444443334555667777777776666888999999988 99999999999999
Q ss_pred HHHhhhhhccceeeeecchhh-hhhccccc-hhh---hhHHHHHHhcCCcEEEhhhHHHhhhhcCCC---------CCCC
Q 002754 468 AKAVAGEAGVNFFSISASQFV-EIYVGVGA-SRV---RSLYQEAKDNAPSVVFIDELDAVGRERGLI---------KGSG 533 (884)
Q Consensus 468 akaLA~el~~~~~~is~s~~~-~~~~g~~~-~~l---~~lf~~a~~~~p~Il~iDEId~l~~~r~~~---------~~Sg 533 (884)
+++|+|...+..+.+....-. -.|+.+.. ..+ ..+++......+. ..-..+..++...++. .-||
T Consensus 355 lk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSg 433 (638)
T PRK10636 355 IKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQ-ELEQKLRDYLGGFGFQGDKVTEETRRFSG 433 (638)
T ss_pred HHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCch-hhHHHHHHHHHHcCCChhHhcCchhhCCH
Confidence 999999987777776653211 12333321 001 1122222221121 1112333333332221 1299
Q ss_pred chhHHHHHHHHHHhhccccCCCceEEE-eccCCCC
Q 002754 534 GQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (884)
Q Consensus 534 ge~~~~~l~~LL~~ld~~~~~~~VlVI-atTN~~~ 567 (884)
|++.+..+..++ ....+++++ .+||+.|
T Consensus 434 GekqRl~La~~l------~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 434 GEKARLVLALIV------WQRPNLLLLDEPTNHLD 462 (638)
T ss_pred HHHHHHHHHHHH------hcCCCEEEEcCCCCCCC
Confidence 999999998888 456778888 7777654
No 148
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=1.5e-09 Score=130.16 Aligned_cols=208 Identities=20% Similarity=0.264 Sum_probs=133.9
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceee----eecch
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS----ISASQ 486 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~----is~s~ 486 (884)
+.....|.++.|....+..+..++.. .+++.++||+||+|+|||++|+++|..+...... -.|+.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 34567888999988888777665542 1245568999999999999999999987542110 01110
Q ss_pred --------------hh--hhhccccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHH
Q 002754 487 --------------FV--EIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLV 546 (884)
Q Consensus 487 --------------~~--~~~~g~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~ 546 (884)
+. +...+.....++.+.+.+.. ....|++|||+|.+... .++.||.
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~--------------a~naLLK 143 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTA--------------AFNALLK 143 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHH--------------HHHHHHH
Confidence 00 00011122345666655543 23469999999988543 6788998
Q ss_pred hhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHH
Q 002754 547 CLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGA 625 (884)
Q Consensus 547 ~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~a 625 (884)
.|+ .....+++|++|+.++.+.+.+++ |+. .+.|+.++.++....+...+.+.+.. +...+..++..+.|. .+
T Consensus 144 ~LE--ePp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~-lr 217 (620)
T PRK14948 144 TLE--EPPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG-LR 217 (620)
T ss_pred HHh--cCCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HH
Confidence 888 345667788777888888889988 654 78898888888887777666554332 223466777777664 35
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 002754 626 ELANIVEVAAINMMRDGRTEITTDDLLQA 654 (884)
Q Consensus 626 dL~~Lv~~A~~~A~~~~~~~It~edi~~A 654 (884)
++.++++..... . ..||.+++...
T Consensus 218 ~A~~lLeklsL~---~--~~It~e~V~~l 241 (620)
T PRK14948 218 DAESLLDQLSLL---P--GPITPEAVWDL 241 (620)
T ss_pred HHHHHHHHHHhc---c--CCCCHHHHHHH
Confidence 555666643322 1 24777666543
No 149
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.03 E-value=5.6e-10 Score=117.75 Aligned_cols=168 Identities=21% Similarity=0.321 Sum_probs=107.4
Q ss_pred EEEECCCCCCchhHHHHhhhhh-----ccceeeeecchhhhhhccccc-hhhhhHHHHHHhcCCcEEEhhhHHHhhhhcC
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGA-SRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~-~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~ 527 (884)
++|+||+|+|||+|+.++++++ +..+++++..+|...+..... ..+..+.+..+ ..++++||+++.+...
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~-- 112 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK-- 112 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH--
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc--
Confidence 8999999999999999999865 456788888887766543221 11222333332 4579999999988543
Q ss_pred CCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCC---CCccCCCCCccc--ccccCCCCChhhHHHHHHHHHc
Q 002754 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHAR 602 (884)
Q Consensus 528 ~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~---LdpaLlr~gRfd--~~I~~~~P~~eeR~~Il~~~l~ 602 (884)
.. ....|+..++.+...++.+||++...|.. +++.|.+ ||. ..+.+.+|+.+.|..|++..+.
T Consensus 113 -------~~---~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 113 -------QR---TQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp -------HH---HHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred -------hH---HHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 11 34455555555555666677777666664 4566767 764 4778899999999999999988
Q ss_pred cCCCCCccc-HHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 002754 603 KKPMADDVD-YLAVASMTDGMVGAELANIVEVAAINM 638 (884)
Q Consensus 603 ~~~~~~did-l~~lA~~t~G~s~adL~~Lv~~A~~~A 638 (884)
..++.-+.+ +..++.... -+.++|..+++.-...+
T Consensus 181 ~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp HTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 776654333 444555543 47788888887765544
No 150
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.02 E-value=4.8e-09 Score=110.61 Aligned_cols=190 Identities=22% Similarity=0.314 Sum_probs=124.4
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhh
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFV 488 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~ 488 (884)
...+.+++..|++..+..+.+-...|-. .....++||+|+.|||||+++|++..+. |..++.+.-..+.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 4567788888999888777665554432 1234559999999999999999999866 5567777655543
Q ss_pred hhhccccchhhhhHHHHHHhc-CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc--CCCceEEEeccCC
Q 002754 489 EIYVGVGASRVRSLYQEAKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--GRGNVITIASTNR 565 (884)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~-~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~--~~~~VlVIatTN~ 565 (884)
. +..+++.++.. ..-|||+|++- +-. ++ .....|-..|+|.. ...||+|.+|+|+
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs-Fe~---------~d---~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS-FEE---------GD---TEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC-CCC---------Cc---HHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 2 34466666643 34589999862 111 11 13455666667643 3578999999998
Q ss_pred CCCCCccCC----------C-----------CCcccccccCCCCChhhHHHHHHHHHccCCCCCcc-c----HHHHHhhC
Q 002754 566 PDILDPALV----------R-----------PGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDV-D----YLAVASMT 619 (884)
Q Consensus 566 ~~~LdpaLl----------r-----------~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~di-d----l~~lA~~t 619 (884)
...++..+. . ..||+..|.|.+|+.++-++|++.++...++.-+. . -...|...
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR 230 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc
Confidence 654432111 1 23999999999999999999999999766554331 1 12233444
Q ss_pred CCCCHHHHHHHH
Q 002754 620 DGMVGAELANIV 631 (884)
Q Consensus 620 ~G~s~adL~~Lv 631 (884)
.|.||+-..+.+
T Consensus 231 g~RSGRtA~QF~ 242 (249)
T PF05673_consen 231 GGRSGRTARQFI 242 (249)
T ss_pred CCCCHHHHHHHH
Confidence 455555444443
No 151
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.01 E-value=7.7e-10 Score=106.03 Aligned_cols=119 Identities=45% Similarity=0.659 Sum_probs=78.1
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccccchh---hhhHHHHHHhcCCcEEEhhhHHHhhhh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASR---VRSLYQEAKDNAPSVVFIDELDAVGRE 525 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~~~---l~~lf~~a~~~~p~Il~iDEId~l~~~ 525 (884)
.+++|+||||+|||++++.++..+ +.+++.+++.............. ....+.......+.++++||++.+...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~ 99 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRG 99 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHH
Confidence 458999999999999999999988 78888888776544322111110 011122333456789999999987322
Q ss_pred cCCCCCCCchhHHHHHHHHHHhhccccC----CCceEEEeccCCCC--CCCccCCCCCcccccccCC
Q 002754 526 RGLIKGSGGQERDATLNQLLVCLDGFEG----RGNVITIASTNRPD--ILDPALVRPGRFDRKIFIP 586 (884)
Q Consensus 526 r~~~~~Sgge~~~~~l~~LL~~ld~~~~----~~~VlVIatTN~~~--~LdpaLlr~gRfd~~I~~~ 586 (884)
....++..+..... ..++.+|+++|... .+++.+.+ ||+.++.++
T Consensus 100 --------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 100 --------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred --------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 22333333333222 46788888888776 67777777 998777775
No 152
>PRK06620 hypothetical protein; Validated
Probab=99.01 E-value=1.9e-09 Score=113.27 Aligned_cols=164 Identities=14% Similarity=0.150 Sum_probs=104.9
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCC
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 531 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~ 531 (884)
..++|+||+|+|||+|+++++...+..+.. ..... ...+ ...++++||||+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~-----------~~~~-----~~~d~lliDdi~~~~~------- 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN-----------EEIL-----EKYNAFIIEDIENWQE------- 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc-----------hhHH-----hcCCEEEEeccccchH-------
Confidence 458999999999999999999876542211 11000 0111 1236899999984311
Q ss_pred CCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCC--CCccCCCCCccc--ccccCCCCChhhHHHHHHHHHccCCCC
Q 002754 532 SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI--LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARKKPMA 607 (884)
Q Consensus 532 Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~--LdpaLlr~gRfd--~~I~~~~P~~eeR~~Il~~~l~~~~~~ 607 (884)
..+-.++..+ ...+..++|+++..|.. + |.|++ |+. .++.+.+|+.+.+..+++..+...++.
T Consensus 100 -------~~lf~l~N~~---~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 100 -------PALLHIFNII---NEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred -------HHHHHHHHHH---HhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 1222333332 34456777777755554 5 77877 775 468899999999999999887655442
Q ss_pred -CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 608 -DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 608 -~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
++..+..++....| +.+.+.++++.....+...+ ..||...+.+++
T Consensus 167 l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 167 ISRQIIDFLLVNLPR-EYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 33345667777654 56667777777543343333 469998888764
No 153
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.00 E-value=4.3e-10 Score=114.08 Aligned_cols=110 Identities=33% Similarity=0.373 Sum_probs=74.3
Q ss_pred cEEEECCCCCCchhHHHHhhhhhcc----ceeeeecchhhhhhccccchhhhhHHHH----HHhcCCcEEEhhhHHHhhh
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGV----NFFSISASQFVEIYVGVGASRVRSLYQE----AKDNAPSVVFIDELDAVGR 524 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~----~~~~is~s~~~~~~~g~~~~~l~~lf~~----a~~~~p~Il~iDEId~l~~ 524 (884)
.++|+||+|||||.++++||..+.. +++.++++++....- ....+..++.. .......||+|||||++++
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~--~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD--VESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH--CSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch--HHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 3899999999999999999999985 999999999876100 00111111111 1111224999999999987
Q ss_pred hcCCCCCCCchhHHHHHHHHHHhhccc---------cCCCceEEEeccCCCC
Q 002754 525 ERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD 567 (884)
Q Consensus 525 ~r~~~~~Sgge~~~~~l~~LL~~ld~~---------~~~~~VlVIatTN~~~ 567 (884)
. .+...+.....+++.||..+++. .+..+++||+|+|.-.
T Consensus 83 ~---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 83 S---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp T---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred c---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 5 22233344446888888888751 2346899999998754
No 154
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=5.1e-09 Score=125.65 Aligned_cols=209 Identities=20% Similarity=0.282 Sum_probs=134.8
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhcccee--------ee-
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF--------SI- 482 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~--------~i- 482 (884)
.++..|+++.|....+..+.+.+.. -.++..+||+||+|+|||++++++|..+.+... .+
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 3567889999988887666655441 235667999999999999999999997643110 00
Q ss_pred ecchhhh-----h--hccc---cchhhhhHHHHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhh
Q 002754 483 SASQFVE-----I--YVGV---GASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (884)
Q Consensus 483 s~s~~~~-----~--~~g~---~~~~l~~lf~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~l 548 (884)
+|..+.. . +-+. ....++.+.+.+... ...|++|||++.+... .++.|+..|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~--------------a~naLLK~L 145 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA--------------AFNAFLKTL 145 (614)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH--------------HHHHHHHHH
Confidence 0000000 0 0011 112345555555432 2458999999887543 678899888
Q ss_pred ccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCc-ccHHHHHhhCCCCCHHHH
Q 002754 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAEL 627 (884)
Q Consensus 549 d~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~d-idl~~lA~~t~G~s~adL 627 (884)
+. ...++++|.+|+....+-+.+++ |.. .+.|.+++.++....+...+...++.-+ ..+..++..+.| +.+++
T Consensus 146 Ee--pp~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~a 219 (614)
T PRK14971 146 EE--PPSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMRDA 219 (614)
T ss_pred hC--CCCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 84 44566777777777888899988 553 7999999999999999887776655432 346677777644 55556
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 628 ANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 628 ~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
.++++.....+ +.. ||.+++...+
T Consensus 220 l~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 220 LSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 56665544322 322 7776665543
No 155
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.97 E-value=2.1e-09 Score=130.37 Aligned_cols=234 Identities=18% Similarity=0.186 Sum_probs=127.1
Q ss_pred hhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcChhHHHhhc
Q 002754 310 STVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQ 389 (884)
Q Consensus 310 ~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~ 389 (884)
++.+..+ ..+++..|.|+|+.|..+++.. .......++.+.+++++++..+++ . .+....+. ....+
T Consensus 220 ~d~i~~L-~~G~i~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~---~~a~~~~~--~~r~~---- 286 (635)
T PRK11147 220 ATRIVDL-DRGKLVSYPGNYDQYLLEKEEA--LRVEELQNAEFDRKLAQEEVWIRQ-G---IKARRTRN--EGRVR---- 286 (635)
T ss_pred cCeEEEE-ECCEEEEecCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh-h---hhhhhhhH--HHHHH----
Confidence 4556666 5688888999999999887743 222333444444555555544432 1 11100000 00000
Q ss_pred hhhhHHHHHHHhcCCCCcccccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhH
Q 002754 390 FMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLL 467 (884)
Q Consensus 390 ~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtL 467 (884)
....+... ... +........+.|+.....++.++.++++...|+...++.++++.+..| +.|+||||+|||||
T Consensus 287 ---~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTL 361 (635)
T PRK11147 287 ---ALKALRRE-RSE-RREVMGTAKMQVEEASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTL 361 (635)
T ss_pred ---HHHHhhhh-hcc-ccccCCceeEEeCCCCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHH
Confidence 00111000 000 000012234445443334555667777777776666889999999988 89999999999999
Q ss_pred HHHhhhhhccceeeeecchhh-hhhccccchhh---hhHHHHHHhcCCcEEE---hhhHHHhhhhcCC---------CCC
Q 002754 468 AKAVAGEAGVNFFSISASQFV-EIYVGVGASRV---RSLYQEAKDNAPSVVF---IDELDAVGRERGL---------IKG 531 (884)
Q Consensus 468 akaLA~el~~~~~~is~s~~~-~~~~g~~~~~l---~~lf~~a~~~~p~Il~---iDEId~l~~~r~~---------~~~ 531 (884)
+++|+|.+.+..+.+..+.-. -.|+.+....+ ..+++.+....+.... -.++..+....++ ..=
T Consensus 362 lk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 441 (635)
T PRK11147 362 LKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKAL 441 (635)
T ss_pred HHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhC
Confidence 999999887777777653211 12343322111 1234433321111000 1223333322222 112
Q ss_pred CCchhHHHHHHHHHHhhccccCCCceEEE-eccCCCC
Q 002754 532 SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (884)
Q Consensus 532 Sgge~~~~~l~~LL~~ld~~~~~~~VlVI-atTN~~~ 567 (884)
|||++.+..+..++ ....+++++ .+||+.|
T Consensus 442 SgGekqRl~la~al------~~~p~lLlLDEPt~~LD 472 (635)
T PRK11147 442 SGGERNRLLLARLF------LKPSNLLILDEPTNDLD 472 (635)
T ss_pred CHHHHHHHHHHHHH------hcCCCEEEEcCCCCCCC
Confidence 99999999998887 456778888 7777654
No 156
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.97 E-value=2.7e-09 Score=119.43 Aligned_cols=127 Identities=33% Similarity=0.459 Sum_probs=89.5
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhh--hccccch-------h-----hhhHHHHHHhcCCcEEEhh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGAS-------R-----VRSLYQEAKDNAPSVVFID 517 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~--~~g~~~~-------~-----l~~lf~~a~~~~p~Il~iD 517 (884)
+.++|.||||||||+|++.+|..++.+++++.|...... .+|...- . -+-+|.... +++++|
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~D 119 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLD 119 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEe
Confidence 448999999999999999999999999999999865543 1111000 0 011222222 499999
Q ss_pred hHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcc----------ccCCCceEEEeccC-----CCCCCCccCCCCCccccc
Q 002754 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDG----------FEGRGNVITIASTN-----RPDILDPALVRPGRFDRK 582 (884)
Q Consensus 518 EId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~----------~~~~~~VlVIatTN-----~~~~LdpaLlr~gRfd~~ 582 (884)
||+...+. +.+.|+..|+. +.-...++||+|+| ....++.++++ ||...
T Consensus 120 EInra~p~--------------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~ 183 (329)
T COG0714 120 EINRAPPE--------------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLR 183 (329)
T ss_pred ccccCCHH--------------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEE
Confidence 99887655 67777777775 22235688999999 44568899999 99889
Q ss_pred ccCCCCChhh-HHHHHH
Q 002754 583 IFIPKPGLIG-RMEILK 598 (884)
Q Consensus 583 I~~~~P~~ee-R~~Il~ 598 (884)
++++.|+.++ ...++.
T Consensus 184 ~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 184 IYVDYPDSEEEERIILA 200 (329)
T ss_pred EecCCCCchHHHHHHHH
Confidence 9999995444 444443
No 157
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.95 E-value=7.7e-09 Score=125.15 Aligned_cols=191 Identities=20% Similarity=0.264 Sum_probs=120.2
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhc-----------------------------------cceeeeecchhhhhhccccc
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAG-----------------------------------VNFFSISASQFVEIYVGVGA 496 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~-----------------------------------~~~~~is~s~~~~~~~g~~~ 496 (884)
+|+||.|++|||||+++++|+..+. .+|+.+.++......+|...
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 4599999999999999999998772 34444444332222222110
Q ss_pred --hhh---hhHHH--HHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc-----------cCCCceE
Q 002754 497 --SRV---RSLYQ--EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGNVI 558 (884)
Q Consensus 497 --~~l---~~lf~--~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~-----------~~~~~Vl 558 (884)
..+ ...++ .+.....+++||||++.+... +++.|+..|+.- ....+++
T Consensus 106 ~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~ 171 (633)
T TIGR02442 106 IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH--------------LVDVLLDAAAMGVNRVEREGLSVSHPARFV 171 (633)
T ss_pred HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH--------------HHHHHHHHHhcCCEEEEECCceeeecCCeE
Confidence 000 00000 001123459999999998655 677787777632 1124689
Q ss_pred EEeccCCC-CCCCccCCCCCcccccccCCCCC-hhhHHHHHHHHHcc-------------------------------CC
Q 002754 559 TIASTNRP-DILDPALVRPGRFDRKIFIPKPG-LIGRMEILKVHARK-------------------------------KP 605 (884)
Q Consensus 559 VIatTN~~-~~LdpaLlr~gRfd~~I~~~~P~-~eeR~~Il~~~l~~-------------------------------~~ 605 (884)
+|+|+|.. ..+.++|+. ||+..|.++.+. .+++.+|+...+.. ..
T Consensus 172 lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~ 249 (633)
T TIGR02442 172 LIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVR 249 (633)
T ss_pred EEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCC
Confidence 99999864 357889998 999889888764 56777777643210 00
Q ss_pred CCCcccHHHHHhhC--CCC-CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 002754 606 MADDVDYLAVASMT--DGM-VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 659 (884)
Q Consensus 606 ~~~didl~~lA~~t--~G~-s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~ 659 (884)
+ ++..+..++... .|. +.+....+++.|...|..+++..|+.+|+..|+..+.
T Consensus 250 i-s~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 250 I-SDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred C-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHh
Confidence 1 111122222221 233 3444457889998999999999999999999998775
No 158
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.95 E-value=1e-08 Score=121.21 Aligned_cols=190 Identities=16% Similarity=0.149 Sum_probs=119.4
Q ss_pred cEEEECCCCCCchhHHHHhhhhhccceeee----ecchhhhhhccc-cchhhhhHHH--HHHhcCCcEEEhhhHHHhhhh
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI----SASQFVEIYVGV-GASRVRSLYQ--EAKDNAPSVVFIDELDAVGRE 525 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~i----s~s~~~~~~~g~-~~~~l~~lf~--~a~~~~p~Il~iDEId~l~~~ 525 (884)
++||+|+||+|||+++++++.......+.. ++..+....+.. ..+.. .++ .......++++|||++.+...
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~--~~~~G~l~~A~~Gil~iDEi~~l~~~ 315 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF--TLEGGALVLADNGVCCIDEFDKMDDS 315 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE--EecCccEEecCCCEEEEechhhCCHH
Confidence 599999999999999999998765432211 111111100000 00000 000 011123469999999998544
Q ss_pred cCCCCCCCchhHHHHHHHHHHhhcccc-----------CCCceEEEeccCCCC-------------CCCccCCCCCcccc
Q 002754 526 RGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALVRPGRFDR 581 (884)
Q Consensus 526 r~~~~~Sgge~~~~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~~-------------~LdpaLlr~gRfd~ 581 (884)
....|+..|+.-. -+..+.||+|+|... .+++++++ |||.
T Consensus 316 --------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdL 379 (509)
T smart00350 316 --------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDL 379 (509)
T ss_pred --------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceee
Confidence 4555565554311 125688999999753 58999999 9997
Q ss_pred ccc-CCCCChhhHHHHHHHHHccCC-----------------------------CCCccc---HHHHH-----hh-----
Q 002754 582 KIF-IPKPGLIGRMEILKVHARKKP-----------------------------MADDVD---YLAVA-----SM----- 618 (884)
Q Consensus 582 ~I~-~~~P~~eeR~~Il~~~l~~~~-----------------------------~~~did---l~~lA-----~~----- 618 (884)
.+. .+.|+.+...+|.++.+.... ..+.+. ...+. .+
T Consensus 380 i~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~ 459 (509)
T smart00350 380 LFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQ 459 (509)
T ss_pred EEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccc
Confidence 654 467888888888876432110 000010 11110 11
Q ss_pred -----CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHc
Q 002754 619 -----TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEER 660 (884)
Q Consensus 619 -----t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~ 660 (884)
..+.|++.+..+++-|...|..+.+..|+.+|+..|+..+..
T Consensus 460 ~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 460 SEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRE 506 (509)
T ss_pred cccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHH
Confidence 235689999999999999999999999999999999987643
No 159
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.94 E-value=8.1e-09 Score=123.70 Aligned_cols=191 Identities=20% Similarity=0.230 Sum_probs=124.5
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhcc--ceeeeecchhhhhhccccc--hhh--hh-HHH--HHHhcCCcEEEhhhHHHh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEIYVGVGA--SRV--RS-LYQ--EAKDNAPSVVFIDELDAV 522 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~--~~~~is~s~~~~~~~g~~~--~~l--~~-lf~--~a~~~~p~Il~iDEId~l 522 (884)
++|||.|++|||||+++++|+..++. +|+++..+......+|... ..+ .. .|+ .+.....+++|+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 46999999999999999999997753 5887775332222232210 000 00 000 001123358999999998
Q ss_pred hhhcCCCCCCCchhHHHHHHHHHHhhcccc-----------CCCceEEEeccCCCC---CCCccCCCCCcccccccCC-C
Q 002754 523 GRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD---ILDPALVRPGRFDRKIFIP-K 587 (884)
Q Consensus 523 ~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~~---~LdpaLlr~gRfd~~I~~~-~ 587 (884)
... +++.|+..|+.-. ...++.||+|+|..+ .++++|+. ||+.+|.+. .
T Consensus 97 ~~~--------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~ 160 (589)
T TIGR02031 97 DDG--------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDV 160 (589)
T ss_pred CHH--------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCC
Confidence 765 6777777776321 124688999999865 68889999 999887766 4
Q ss_pred CChhhHHHHHHHHHccC-------------------------CCCCcccHHHHHhh--CCCCC-HHHHHHHHHHHHHHHH
Q 002754 588 PGLIGRMEILKVHARKK-------------------------PMADDVDYLAVASM--TDGMV-GAELANIVEVAAINMM 639 (884)
Q Consensus 588 P~~eeR~~Il~~~l~~~-------------------------~~~~didl~~lA~~--t~G~s-~adL~~Lv~~A~~~A~ 639 (884)
|+.++|.+|++.++... .+.++ .+..++.. ..|.+ .+....+++.|...|.
T Consensus 161 ~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aa 239 (589)
T TIGR02031 161 ASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAKAHAA 239 (589)
T ss_pred CCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH
Confidence 57777888887654211 11111 11222211 22333 3334488899999999
Q ss_pred HhCCCccCHHHHHHHHHHHH
Q 002754 640 RDGRTEITTDDLLQAAQIEE 659 (884)
Q Consensus 640 ~~~~~~It~edi~~Al~~~~ 659 (884)
.+++..|+.+|+..|+..+.
T Consensus 240 l~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 240 LHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HhCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998775
No 160
>PHA02244 ATPase-like protein
Probab=98.93 E-value=6.2e-08 Score=108.14 Aligned_cols=125 Identities=22% Similarity=0.265 Sum_probs=81.6
Q ss_pred cEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccc--cchhh--hhHHHHHHhcCCcEEEhhhHHHhhhhcCC
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGV--GASRV--RSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~--~~~~l--~~lf~~a~~~~p~Il~iDEId~l~~~r~~ 528 (884)
.++|+||||||||+|+++||..++.+++.++...-.....|. ....+ ..++..+ ..+++++|||++.+.+.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~--- 195 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIPE--- 195 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCHH---
Confidence 489999999999999999999999999988742100001111 11111 1233332 34579999999887554
Q ss_pred CCCCCchhHHHHHHHHHHhhcc---------ccCCCceEEEeccCCC-----------CCCCccCCCCCcccccccCCCC
Q 002754 529 IKGSGGQERDATLNQLLVCLDG---------FEGRGNVITIASTNRP-----------DILDPALVRPGRFDRKIFIPKP 588 (884)
Q Consensus 529 ~~~Sgge~~~~~l~~LL~~ld~---------~~~~~~VlVIatTN~~-----------~~LdpaLlr~gRfd~~I~~~~P 588 (884)
++..|...++. .....++.+|+|+|.+ ..+++++++ ||- .|+|+.|
T Consensus 196 -----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 196 -----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred -----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 33444444431 1224678999999973 467899999 996 7999998
Q ss_pred ChhhHHHHH
Q 002754 589 GLIGRMEIL 597 (884)
Q Consensus 589 ~~eeR~~Il 597 (884)
+. ....|+
T Consensus 262 ~~-~E~~i~ 269 (383)
T PHA02244 262 EK-IEHLIS 269 (383)
T ss_pred cH-HHHHHh
Confidence 73 333444
No 161
>PRK09087 hypothetical protein; Validated
Probab=98.92 E-value=5.3e-09 Score=110.86 Aligned_cols=170 Identities=18% Similarity=0.173 Sum_probs=109.5
Q ss_pred EEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCC
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSG 533 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sg 533 (884)
++|+||+|+|||+|+++++...+.. .++...+... ++..... .+++||+++.+...
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~-------- 102 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD-------- 102 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC--------
Confidence 8999999999999999999875443 3333222211 1222211 47899999865211
Q ss_pred chhHHHHHHHHHHhhccccCCCceEEEeccCCCCC---CCccCCCCCccc--ccccCCCCChhhHHHHHHHHHccCCCC-
Q 002754 534 GQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARKKPMA- 607 (884)
Q Consensus 534 ge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~---LdpaLlr~gRfd--~~I~~~~P~~eeR~~Il~~~l~~~~~~- 607 (884)
+ ..|+..++.....+..+||+++..|.. ..|.|++ ||. .++.+.+|+.+.|..|++.++...++.
T Consensus 103 -~------~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 -E------TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred -H------HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 1 123333333344455677776655543 3677887 774 688999999999999999998765443
Q ss_pred CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 002754 608 DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (884)
Q Consensus 608 ~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~ 658 (884)
++..+..|+....| +.+.+..+++.....+...+ ..||...+.+++...
T Consensus 174 ~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 33346667777663 44555565666555554444 459999999988754
No 162
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.92 E-value=1.3e-08 Score=110.80 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=92.8
Q ss_pred CcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCC------------CCCCCccCCCCCc
Q 002754 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR------------PDILDPALVRPGR 578 (884)
Q Consensus 511 p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~------------~~~LdpaLlr~gR 578 (884)
|+|+||||++-+.-. .|..|-..|+. .-.. +||++||+ |.-+|..|+. |
T Consensus 292 pGVLFIDEvHmLDIE--------------~FsFlnrAlEs--e~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHMLDIE--------------CFSFLNRALES--ELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhhhHH--------------HHHHHHHHhhc--ccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 667888887766332 34444444442 2222 56666775 5567888887 6
Q ss_pred ccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 002754 579 FDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (884)
Q Consensus 579 fd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~ 657 (884)
+- +|...+++.++...|++..+....+. ++.-++.|+....--|-+--.+|+.-|...|.++++..|..+|+..|.+.
T Consensus 353 ll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 LL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred ee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 54 77888999999999999998765443 33346777777776777777788889999999999999999999999875
Q ss_pred HH
Q 002754 658 EE 659 (884)
Q Consensus 658 ~~ 659 (884)
..
T Consensus 432 F~ 433 (450)
T COG1224 432 FL 433 (450)
T ss_pred Hh
Confidence 53
No 163
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.92 E-value=2.2e-08 Score=108.24 Aligned_cols=189 Identities=13% Similarity=0.166 Sum_probs=114.5
Q ss_pred EEEECCCCCCchhHHHHhhhhhccc-eeee---e----cchhhhh---hccccch------hhhhHH----HHHHhcCCc
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAGVN-FFSI---S----ASQFVEI---YVGVGAS------RVRSLY----QEAKDNAPS 512 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~-~~~i---s----~s~~~~~---~~g~~~~------~l~~lf----~~a~~~~p~ 512 (884)
++|+||||+||||+++.+++.+... +... + ..++... .+|.... .+..+. .......+.
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 125 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRA 125 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCe
Confidence 7899999999999999999987532 1111 1 1111111 1221110 111222 122345567
Q ss_pred EEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEecc--CCCCCCC----ccCCCCCcccccccCC
Q 002754 513 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NRPDILD----PALVRPGRFDRKIFIP 586 (884)
Q Consensus 513 Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatT--N~~~~Ld----paLlr~gRfd~~I~~~ 586 (884)
++++||++.+... ....+..+..... .....+.|+.+. ...+.+. ..+.+ |+...+.++
T Consensus 126 vliiDe~~~l~~~-----------~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~ 190 (269)
T TIGR03015 126 LLVVDEAQNLTPE-----------LLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLG 190 (269)
T ss_pred EEEEECcccCCHH-----------HHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCC
Confidence 9999999876432 1112222221111 112223333332 2221221 12444 777788999
Q ss_pred CCChhhHHHHHHHHHccCCC-----CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 002754 587 KPGLIGRMEILKVHARKKPM-----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (884)
Q Consensus 587 ~P~~eeR~~Il~~~l~~~~~-----~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~ 658 (884)
+.+.++...++...+...+. -.+..+..+...+.|.... |..+++.+...|..++...|+.+++..++..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 99999999999988864332 2334567788899888654 99999999999989999999999999998754
No 164
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.90 E-value=8.5e-10 Score=107.43 Aligned_cols=109 Identities=32% Similarity=0.458 Sum_probs=71.1
Q ss_pred cEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhh--hccccc---hh----hhhHHHHHHhcCCcEEEhhhHHHhh
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGA---SR----VRSLYQEAKDNAPSVVFIDELDAVG 523 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~--~~g~~~---~~----l~~lf~~a~~~~p~Il~iDEId~l~ 523 (884)
+|+|+||||||||+|++.+|..++.++..++++...+. .+|.-. .. -..+...+. .+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 37999999999999999999999999999988775433 111100 00 011111111 46799999998775
Q ss_pred hhcCCCCCCCchhHHHHHHHHHHhhcccc-----------CCC------ceEEEeccCCCC----CCCccCCCCCcc
Q 002754 524 RERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRG------NVITIASTNRPD----ILDPALVRPGRF 579 (884)
Q Consensus 524 ~~r~~~~~Sgge~~~~~l~~LL~~ld~~~-----------~~~------~VlVIatTN~~~----~LdpaLlr~gRf 579 (884)
.. ++..|+..++.-. ... ++.||+|+|..+ .++++|++ ||
T Consensus 79 ~~--------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 PE--------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp HH--------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred HH--------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 44 5666665555410 011 489999999988 88999998 76
No 165
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.90 E-value=6.9e-09 Score=106.58 Aligned_cols=145 Identities=23% Similarity=0.313 Sum_probs=97.0
Q ss_pred ccCCcEEEECCCCCCchhHHHHhhhhhccc------------------------eeeeecchhhhhhccccchhhhhHHH
Q 002754 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------------------FFSISASQFVEIYVGVGASRVRSLYQ 504 (884)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~------------------------~~~is~s~~~~~~~g~~~~~l~~lf~ 504 (884)
+++..+||+||+|+|||++++.++..+... +..+.... . ......++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 456679999999999999999999876321 11111100 0 001123444455
Q ss_pred HHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCccc
Q 002754 505 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 580 (884)
Q Consensus 505 ~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd 580 (884)
.+.. ....|++|||++.+... ..+.|+..|+. ...++++|.+||.+..+.+++.+ |+.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~~ 148 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RCQ 148 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hcE
Confidence 5443 23469999999998654 56778888885 34566677667777899999988 654
Q ss_pred ccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCC
Q 002754 581 RKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGM 622 (884)
Q Consensus 581 ~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~ 622 (884)
.+.|++|+.++...++..+ ++ ++..+..++..+.|.
T Consensus 149 -~~~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGS 184 (188)
T ss_pred -EeeCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCC
Confidence 8999999999998888776 22 233355566665553
No 166
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.87 E-value=2.1e-08 Score=115.36 Aligned_cols=193 Identities=19% Similarity=0.230 Sum_probs=114.0
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhcc--ceeeeecc-hhhhhhcccc-chhh--hhHHHHHHhc---CCcEEEhhhHHHh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISAS-QFVEIYVGVG-ASRV--RSLYQEAKDN---APSVVFIDELDAV 522 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~--~~~~is~s-~~~~~~~g~~-~~~l--~~lf~~a~~~---~p~Il~iDEId~l 522 (884)
++++|.||||||||++|++|+...+. +|..+.+. ......+|.. .... ..-|...... ...++|+|||..+
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra 119 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA 119 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccC
Confidence 44999999999999999999986643 33333222 0111222211 0000 1112211111 2348999999876
Q ss_pred hhhcCCCCCCCchhHHHHHHHHHHhhcccc-CC-------CceEEEeccCCCCC---CCccCCCCCcccccccCCCCC-h
Q 002754 523 GRERGLIKGSGGQERDATLNQLLVCLDGFE-GR-------GNVITIASTNRPDI---LDPALVRPGRFDRKIFIPKPG-L 590 (884)
Q Consensus 523 ~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~-~~-------~~VlVIatTN~~~~---LdpaLlr~gRfd~~I~~~~P~-~ 590 (884)
.+. +++.||..|+... .. ..-+++++||.+.. ..+++.. ||-..|.+|+|+ .
T Consensus 120 sp~--------------~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~ 183 (498)
T PRK13531 120 GPA--------------ILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDK 183 (498)
T ss_pred CHH--------------HHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCch
Confidence 554 7888888884321 11 11244455574322 2347888 998889999997 4
Q ss_pred hhHHHHHHHHHcc--CCC-----------------------CCcc--cHHHHHhh---C---CCCCHHHHHHHHHHHHHH
Q 002754 591 IGRMEILKVHARK--KPM-----------------------ADDV--DYLAVASM---T---DGMVGAELANIVEVAAIN 637 (884)
Q Consensus 591 eeR~~Il~~~l~~--~~~-----------------------~~di--dl~~lA~~---t---~G~s~adL~~Lv~~A~~~ 637 (884)
++-.+|+...... ... .+.+ .+..+... + ...|++--..+++-|...
T Consensus 184 ~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~ 263 (498)
T PRK13531 184 ANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQAS 263 (498)
T ss_pred HHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHH
Confidence 5557777653211 101 0000 01222221 2 237888888999999999
Q ss_pred HHHhCCCccCHHHHHHHHHHHHcC
Q 002754 638 MMRDGRTEITTDDLLQAAQIEERG 661 (884)
Q Consensus 638 A~~~~~~~It~edi~~Al~~~~~g 661 (884)
|...|+..|+.+|+. .+.-+.+.
T Consensus 264 A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 264 AFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHCCCCCCCHHHHH-HhHHHhcc
Confidence 999999999999999 56555544
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.83 E-value=5.6e-09 Score=98.86 Aligned_cols=125 Identities=34% Similarity=0.437 Sum_probs=76.7
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhccc---eeeeecchhhhhh--------------ccccchhhhhHHHHHHhcCCcEE
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISASQFVEIY--------------VGVGASRVRSLYQEAKDNAPSVV 514 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~---~~~is~s~~~~~~--------------~g~~~~~l~~lf~~a~~~~p~Il 514 (884)
..++|+||||||||++++.|+..+... ++.++++...... ..........+++.+....++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 348999999999999999999988765 7777766543211 11222334567777777778999
Q ss_pred EhhhHHHhhhhcCCCCCCCchhHHHHHHHH--HHhhccccCCCceEEEeccCCC-CCCCccCCCCCcccccccCCCC
Q 002754 515 FIDELDAVGRERGLIKGSGGQERDATLNQL--LVCLDGFEGRGNVITIASTNRP-DILDPALVRPGRFDRKIFIPKP 588 (884)
Q Consensus 515 ~iDEId~l~~~r~~~~~Sgge~~~~~l~~L--L~~ld~~~~~~~VlVIatTN~~-~~LdpaLlr~gRfd~~I~~~~P 588 (884)
++||++.+...... ...... ...........+..+|+++|.. ...+..+.+ |++..+.+..+
T Consensus 83 iiDei~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQE----------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHHH----------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999887544210 000000 0001111234567888888862 333334443 78877777554
No 168
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.83 E-value=1.9e-08 Score=117.78 Aligned_cols=185 Identities=23% Similarity=0.259 Sum_probs=112.5
Q ss_pred cEEEECCCCCCchhHHHHhhhhhccceee--eecch------------------hhhh--------hccccchhhhhHHH
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ------------------FVEI--------YVGVGASRVRSLYQ 504 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~--is~s~------------------~~~~--------~~g~~~~~l~~lf~ 504 (884)
.++|+||||+|||+|++.+++.+.+..+. +.... |... .+|.+...-...+
T Consensus 213 ~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i- 291 (499)
T TIGR00368 213 NLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEI- 291 (499)
T ss_pred EEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchhhh-
Confidence 38999999999999999999865332111 11110 0000 1111000000011
Q ss_pred HHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc-----------CCCceEEEeccCCC------C
Q 002754 505 EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRP------D 567 (884)
Q Consensus 505 ~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~------~ 567 (884)
.....+++||||++.+... ++..|++.|+... -..++.+|+++|.- +
T Consensus 292 --~lA~~GvLfLDEi~e~~~~--------------~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~ 355 (499)
T TIGR00368 292 --SLAHNGVLFLDELPEFKRS--------------VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGG 355 (499)
T ss_pred --hccCCCeEecCChhhCCHH--------------HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCC
Confidence 2223469999999987654 6677777665421 12568999999862 1
Q ss_pred -----------------CCCccCCCCCcccccccCCCCChhh-------------HHHHHHH------HHccC---CCCC
Q 002754 568 -----------------ILDPALVRPGRFDRKIFIPKPGLIG-------------RMEILKV------HARKK---PMAD 608 (884)
Q Consensus 568 -----------------~LdpaLlr~gRfd~~I~~~~P~~ee-------------R~~Il~~------~l~~~---~~~~ 608 (884)
.+...|++ |||.++.++.++..+ |..+.+. .+... ..+.
T Consensus 356 ~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~ 433 (499)
T TIGR00368 356 KNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNA 433 (499)
T ss_pred CcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Confidence 47778888 999999998765432 2223221 11111 1111
Q ss_pred ccc----------------HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 609 DVD----------------YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 609 did----------------l~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
.+. +..-+....++|.+....+++.|..+|..++...|+.+|+.+|+.
T Consensus 434 ~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 434 DLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred cCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 111 111123344689999999999999999999999999999999974
No 169
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=2.1e-08 Score=111.93 Aligned_cols=155 Identities=22% Similarity=0.324 Sum_probs=102.6
Q ss_pred cccCCcEEEECCCCCCchhHHHHhhhhhccce--eeeecch------hh-----hh-hc---c----ccchhhhhHHHHH
Q 002754 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--FSISASQ------FV-----EI-YV---G----VGASRVRSLYQEA 506 (884)
Q Consensus 448 ~~i~~giLL~GPpGtGKTtLakaLA~el~~~~--~~is~s~------~~-----~~-~~---g----~~~~~l~~lf~~a 506 (884)
-+++.++||+||+|+|||++|+.+|..+.... ..-.|+. +. +. ++ + -....++.+.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 45677799999999999999999998763210 0001110 00 00 00 0 0123445555554
Q ss_pred Hh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCccccc
Q 002754 507 KD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRK 582 (884)
Q Consensus 507 ~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~ 582 (884)
.. ....|++||++|.+... ..|.||..++. +..++++|.+|+.++.+.|.+++ |.. .
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~-~ 159 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ-Q 159 (328)
T ss_pred hhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-e
Confidence 43 33568999999998655 78999999994 55788999999999999999999 654 6
Q ss_pred ccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCH
Q 002754 583 IFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 624 (884)
Q Consensus 583 I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~ 624 (884)
+.|++|+.++....+...... ..+.+...++..+.|-.+
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPL 198 (328)
T ss_pred eeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHH
Confidence 999999999888888765321 122233445555655443
No 170
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=4.4e-08 Score=110.88 Aligned_cols=180 Identities=21% Similarity=0.240 Sum_probs=114.5
Q ss_pred cccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccce----e-------e
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF----F-------S 481 (884)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~----~-------~ 481 (884)
.+..++++.|.+.++..+.+.+.. -++|..+||+||+|+||+++|.++|..+-..- . .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 455677788877777666554432 35677799999999999999999998662110 0 0
Q ss_pred e----ecchh--hh------h-hc-----ccc--------chhhhhHHHHHH----hcCCcEEEhhhHHHhhhhcCCCCC
Q 002754 482 I----SASQF--VE------I-YV-----GVG--------ASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKG 531 (884)
Q Consensus 482 i----s~s~~--~~------~-~~-----g~~--------~~~l~~lf~~a~----~~~p~Il~iDEId~l~~~r~~~~~ 531 (884)
+ .|... +. . ++ +.+ ...++.+.+.+. ...|.|++|||+|.+...
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~------ 156 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNAN------ 156 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHH------
Confidence 0 00000 00 0 01 000 112233333322 245679999999988654
Q ss_pred CCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCccc
Q 002754 532 SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD 611 (884)
Q Consensus 532 Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~did 611 (884)
..+.|+..++ ....++++|.+|+.++.+.|.+++ |.. .|.|++|+.++..+++...... ..+..
T Consensus 157 --------aanaLLK~LE--epp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 157 --------AANALLKVLE--EPPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred --------HHHHHHHHHh--cCCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 7888888888 445677888888889889999988 554 8999999999999998876422 11222
Q ss_pred HHHHHhhCCCCCHH
Q 002754 612 YLAVASMTDGMVGA 625 (884)
Q Consensus 612 l~~lA~~t~G~s~a 625 (884)
+..++..+.|..+.
T Consensus 221 ~~~l~~~s~Gsp~~ 234 (365)
T PRK07471 221 RAALAALAEGSVGR 234 (365)
T ss_pred HHHHHHHcCCCHHH
Confidence 24566666665443
No 171
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.75 E-value=6e-08 Score=113.36 Aligned_cols=185 Identities=24% Similarity=0.264 Sum_probs=113.1
Q ss_pred cEEEECCCCCCchhHHHHhhhhhccceee--eecchh------------------hhh--------hccccchhhhhHHH
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQF------------------VEI--------YVGVGASRVRSLYQ 504 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~--is~s~~------------------~~~--------~~g~~~~~l~~lf~ 504 (884)
.++|+||||+|||+|++.|++.+.+..+. +....+ ... .+|.+...-...
T Consensus 212 ~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~-- 289 (506)
T PRK09862 212 NLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE-- 289 (506)
T ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH--
Confidence 39999999999999999999876543221 111111 000 111110000011
Q ss_pred HHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc-----------CCCceEEEeccCCCC------
Q 002754 505 EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD------ 567 (884)
Q Consensus 505 ~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~~------ 567 (884)
+......++|+||++.+... ++..|++.|+.-. ...++.+|+|+|...
T Consensus 290 -l~~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~ 354 (506)
T PRK09862 290 -ISLAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQG 354 (506)
T ss_pred -hhhccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCC
Confidence 22233459999999876543 6677776664311 135689999998752
Q ss_pred ---------------CCCccCCCCCcccccccCCCCChhh----------HHHHH----H---HH-HccCCCCCccc---
Q 002754 568 ---------------ILDPALVRPGRFDRKIFIPKPGLIG----------RMEIL----K---VH-ARKKPMADDVD--- 611 (884)
Q Consensus 568 ---------------~LdpaLlr~gRfd~~I~~~~P~~ee----------R~~Il----~---~~-l~~~~~~~did--- 611 (884)
.++.++++ |||.++.++.|+.++ ...|- . .. .+.......+.
T Consensus 355 ~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~ 432 (506)
T PRK09862 355 NHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPE 432 (506)
T ss_pred CCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHH
Confidence 36678888 999999999874321 11121 1 00 00000010000
Q ss_pred -------------HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 612 -------------YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 612 -------------l~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
+..-+....|.|.+....+++.|..+|..+++..|+.+|+.+|+.
T Consensus 433 l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 433 IRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 111123455789999999999999999999999999999999986
No 172
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.8e-08 Score=114.17 Aligned_cols=232 Identities=15% Similarity=0.124 Sum_probs=142.8
Q ss_pred hhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcChhHHHhhc
Q 002754 310 STVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQ 389 (884)
Q Consensus 310 ~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~ 389 (884)
++.|..+ ...++.+|+|||+.|.+.+. ++...++++++.+......++.++..++-.+++....+++
T Consensus 262 ~tdIIH~-~~~kL~~YkGN~~~Fvk~k~--E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSR---------- 328 (582)
T KOG0062|consen 262 CTDIIHL-ENLKLDYYKGNYSQFVKTKP--EAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSR---------- 328 (582)
T ss_pred HHHHHHH-hhhhhhhhcCcHHHHHHhhH--HhhhhhhhhcchHHHHHHHHHHHHHHhccCcccchhHHHH----------
Confidence 4445555 55688999999999999999 5557778888888888889999998877433321111111
Q ss_pred hhhhHHHHHHHhcCCC--CcccccCcccccccc-cCchhHHHHHHHHHHhhccc--ccccccccccC--CcEEEECCCCC
Q 002754 390 FMKSGARVRRAYGKGL--PQYLERGVDVKFSDV-AGLGKIRLELEEIVKFFTHG--EMYRRRGVRIP--GGILLCGPPGV 462 (884)
Q Consensus 390 ~~~~~a~vsr~t~ip~--~~~~~~~~~~~f~~~-~gl~~~~~~l~~lv~~~~~~--~~~~~~g~~i~--~giLL~GPpGt 462 (884)
+...-..|. +...+....+.|+.. .-+....+++.++...+.-. ..+.++|.... ..++.+|+||.
T Consensus 329 -------Ik~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~ 401 (582)
T KOG0062|consen 329 -------IKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGD 401 (582)
T ss_pred -------HHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCch
Confidence 111111121 122223344555552 23344445555555444322 35555665554 34999999999
Q ss_pred CchhHHHHhhhhhccceeeeecchhhhh-hcccc----chhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCC------
Q 002754 463 GKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVG----ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG------ 531 (884)
Q Consensus 463 GKTtLakaLA~el~~~~~~is~s~~~~~-~~g~~----~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~------ 531 (884)
||||+.|.+.+++.+.-+.+....-... |+.+. ....-..++.+....|+. .-.|++.-++..+..+.
T Consensus 402 gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~-~~ee~r~hl~~~Gl~g~la~~si 480 (582)
T KOG0062|consen 402 GKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK-TEEEIRRHLGSFGLSGELALQSI 480 (582)
T ss_pred hHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC-CHHHHHHHHHhcCCCchhhhccc
Confidence 9999999999988765554443332211 21111 111233455555566663 55677766655544332
Q ss_pred ---CCchhHHHHHHHHHHhhccccCCCceEEE-eccCCCCC
Q 002754 532 ---SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 568 (884)
Q Consensus 532 ---Sgge~~~~~l~~LL~~ld~~~~~~~VlVI-atTN~~~~ 568 (884)
|||++.+.+++.+. ..+++++|+ .+||++|.
T Consensus 481 ~~LSGGQKsrvafA~~~------~~~PhlLVLDEPTNhLD~ 515 (582)
T KOG0062|consen 481 ASLSGGQKSRVAFAACT------WNNPHLLVLDEPTNHLDR 515 (582)
T ss_pred cccCCcchhHHHHHHHh------cCCCcEEEecCCCccccH
Confidence 99999999999887 678899998 99999874
No 173
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=4.1e-08 Score=110.54 Aligned_cols=180 Identities=18% Similarity=0.159 Sum_probs=111.1
Q ss_pred ccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhcc-------ceeee-ec-
Q 002754 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------NFFSI-SA- 484 (884)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~-------~~~~i-s~- 484 (884)
+..++.+.|...++..+..++. .-+.|..++|+||+|+||||+++.+|..+.. +.... .+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~ 87 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDP 87 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCC
Confidence 4456667777777655554443 1245667999999999999999999987643 11100 11
Q ss_pred --chhhhh---------hcc----cc---------chhhhhHHHHHH----hcCCcEEEhhhHHHhhhhcCCCCCCCchh
Q 002754 485 --SQFVEI---------YVG----VG---------ASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQE 536 (884)
Q Consensus 485 --s~~~~~---------~~g----~~---------~~~l~~lf~~a~----~~~p~Il~iDEId~l~~~r~~~~~Sgge~ 536 (884)
...... ++. .. ...++.+.+.+. .....|++|||+|.+...
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~----------- 156 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN----------- 156 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH-----------
Confidence 000000 010 00 112233332222 234569999999998654
Q ss_pred HHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHH
Q 002754 537 RDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVA 616 (884)
Q Consensus 537 ~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA 616 (884)
..+.||..++. ...++++|..|+.++.+.|.+++ |+ ..+.|++|+.++...++........+ ++..+..++
T Consensus 157 ---aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~i~ 227 (351)
T PRK09112 157 ---AANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEALL 227 (351)
T ss_pred ---HHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHHHH
Confidence 67888888885 44566666667778888899988 66 49999999999999999874322221 122245566
Q ss_pred hhCCCCCH
Q 002754 617 SMTDGMVG 624 (884)
Q Consensus 617 ~~t~G~s~ 624 (884)
..+.|..+
T Consensus 228 ~~s~G~pr 235 (351)
T PRK09112 228 QRSKGSVR 235 (351)
T ss_pred HHcCCCHH
Confidence 66655443
No 174
>PRK04132 replication factor C small subunit; Provisional
Probab=98.75 E-value=4.7e-08 Score=119.78 Aligned_cols=178 Identities=22% Similarity=0.251 Sum_probs=126.2
Q ss_pred ccccCCc-EEEEC--CCCCCchhHHHHhhhhh-----ccceeeeecchhhhhhccccchhhhhHHHHHHhc------CCc
Q 002754 447 GVRIPGG-ILLCG--PPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDN------APS 512 (884)
Q Consensus 447 g~~i~~g-iLL~G--PpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~------~p~ 512 (884)
.+.+|+- -+..| |++.||||+|++||+++ +.+++.++.++.... ..++.+...+... .+.
T Consensus 559 ~~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~K 632 (846)
T PRK04132 559 DLHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFK 632 (846)
T ss_pred EeccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCE
Confidence 3445543 56678 99999999999999987 457899998874221 2345454443322 235
Q ss_pred EEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhh
Q 002754 513 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 592 (884)
Q Consensus 513 Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~ee 592 (884)
|++|||+|.+... ..+.|+..|+. ...++.||++||.+..+.+++++ |+ ..+.|++|+.++
T Consensus 633 VvIIDEaD~Lt~~--------------AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~ 693 (846)
T PRK04132 633 IIFLDEADALTQD--------------AQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDED 693 (846)
T ss_pred EEEEECcccCCHH--------------HHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHH
Confidence 9999999998654 67888888883 45678899999999999999998 55 388999999999
Q ss_pred HHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 593 RMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 593 R~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
....++..+...++. ++..+..++..+.|-.+.-| ++++.++. . ...||.+++....
T Consensus 694 i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AI-n~Lq~~~~---~--~~~It~~~V~~~~ 751 (846)
T PRK04132 694 IAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI-NILQAAAA---L--DDKITDENVFLVA 751 (846)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHH-HHHHHHHH---h--cCCCCHHHHHHHh
Confidence 988888777644332 34567888888887555544 55554431 1 2358888877653
No 175
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=5.2e-08 Score=108.28 Aligned_cols=170 Identities=15% Similarity=0.254 Sum_probs=111.7
Q ss_pred ccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhcc--------ceeeeecchh
Q 002754 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV--------NFFSISASQF 487 (884)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~--------~~~~is~s~~ 487 (884)
.|+++.|...++..+.+.+. .-.+|..++|+||+|+|||++|+.+|..+-. .+..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 46777787777766555442 1245666899999999999999999986522 12222211
Q ss_pred hhhhccc--cchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEe
Q 002754 488 VEIYVGV--GASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIA 561 (884)
Q Consensus 488 ~~~~~g~--~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIa 561 (884)
-|. ....++.+.+.+.. ....|++||++|.+... ..+.|+..++. ...++++|.
T Consensus 69 ----~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~naLLK~LEe--pp~~t~~il 128 (313)
T PRK05564 69 ----NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQNAFLKTIEE--PPKGVFIIL 128 (313)
T ss_pred ----cCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHHHHHHHhcC--CCCCeEEEE
Confidence 111 11234555443322 23459999999888654 78899999984 556777777
Q ss_pred ccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCH
Q 002754 562 STNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 624 (884)
Q Consensus 562 tTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~ 624 (884)
+|+.++.+.|.+++ |. ..+.|++|+.++....+...+.. . +......++..+.|..+
T Consensus 129 ~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 129 LCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCCCHH
Confidence 77788999999998 54 38999999999988877765531 1 22334456666655433
No 176
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.71 E-value=1.2e-07 Score=105.17 Aligned_cols=129 Identities=32% Similarity=0.444 Sum_probs=89.6
Q ss_pred ccCCcEEEECCCCCCchhHHHHhhhhhc------------------------cceeeeecchhhhhhccccchhhhhHHH
Q 002754 449 RIPGGILLCGPPGVGKTLLAKAVAGEAG------------------------VNFFSISASQFVEIYVGVGASRVRSLYQ 504 (884)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~------------------------~~~~~is~s~~~~~~~g~~~~~l~~lf~ 504 (884)
..|..+||+||||+|||++|.++|+.+. +.+..++.++....- .....++.+-+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHH
Confidence 3455699999999999999999999886 455566555432210 11222333333
Q ss_pred HHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCccc
Q 002754 505 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 580 (884)
Q Consensus 505 ~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd 580 (884)
.... ...-|++|||+|.+..+ ..+.++..++ ....++.+|.+||.+..+-|.+.++| .
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~--------------A~nallk~lE--ep~~~~~~il~~n~~~~il~tI~SRc--~ 161 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED--------------AANALLKTLE--EPPKNTRFILITNDPSKILPTIRSRC--Q 161 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhc--cCCCCeEEEEEcCChhhccchhhhcc--e
Confidence 3322 33569999999999765 7788888888 56778899999999999999999844 3
Q ss_pred ccccCCCCChhhHHHHHH
Q 002754 581 RKIFIPKPGLIGRMEILK 598 (884)
Q Consensus 581 ~~I~~~~P~~eeR~~Il~ 598 (884)
.+.|++|+.........
T Consensus 162 -~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 162 -RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred -eeecCCchHHHHHHHhh
Confidence 78887765544444333
No 177
>PLN03073 ABC transporter F family; Provisional
Probab=98.70 E-value=3.9e-08 Score=120.35 Aligned_cols=233 Identities=15% Similarity=0.151 Sum_probs=120.5
Q ss_pred hhhhhccccceeeeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhhhhcChhHHHhhc
Q 002754 310 STVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQ 389 (884)
Q Consensus 310 ~~~~~~l~~~~~l~~ykGny~~y~~~le~~e~~~~~era~e~~~~~i~~Lekel~~~~~~~~~~~~~~~~~~~~~k~~v~ 389 (884)
++.+..+ ..+++..|.|+|+.|....+ ++....++.++.++++++.+++.+.+.+....+....+.. .+..
T Consensus 408 ~d~i~~l-~~g~i~~~~g~~~~~~~~~~--~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~----~k~l-- 478 (718)
T PLN03073 408 VTDILHL-HGQKLVTYKGDYDTFERTRE--EQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSR----IKAL-- 478 (718)
T ss_pred CCEEEEE-ECCEEEEeCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhc----chHH--
Confidence 4556666 56888899999999988766 3444455555666677777777666433211111000000 0000
Q ss_pred hhhhHHHHHHHhcCCCCcccccCccccccccc-CchhHHHHHHHHHHhhc-ccccccccccccCCc--EEEECCCCCCch
Q 002754 390 FMKSGARVRRAYGKGLPQYLERGVDVKFSDVA-GLGKIRLELEEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKT 465 (884)
Q Consensus 390 ~~~~~a~vsr~t~ip~~~~~~~~~~~~f~~~~-gl~~~~~~l~~lv~~~~-~~~~~~~~g~~i~~g--iLL~GPpGtGKT 465 (884)
+.+.... +.. ......+.|+... ..+...+.++++...|. ....+.++++.+..| ++|+||||+|||
T Consensus 479 -----~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKS 549 (718)
T PLN03073 479 -----DRLGHVD--AVV--NDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKS 549 (718)
T ss_pred -----HHHhhhh--ccc--cCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHH
Confidence 0000000 000 0001111222111 11223445556655563 234788899999887 899999999999
Q ss_pred hHHHHhhhhhccceeeeecchhhh-hhccccc-hh--h-hhHHHHHHhcCCcEEEhhhHHHhhhhcCC---------CCC
Q 002754 466 LLAKAVAGEAGVNFFSISASQFVE-IYVGVGA-SR--V-RSLYQEAKDNAPSVVFIDELDAVGRERGL---------IKG 531 (884)
Q Consensus 466 tLakaLA~el~~~~~~is~s~~~~-~~~g~~~-~~--l-~~lf~~a~~~~p~Il~iDEId~l~~~r~~---------~~~ 531 (884)
||+++|+|.+.+..+.+....... .|+.+.. .. + ...........+. ..-.++..++...+. ..-
T Consensus 550 TLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~L~~~gl~~~~~~~~~~~L 628 (718)
T PLN03073 550 TILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTL 628 (718)
T ss_pred HHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCC-CCHHHHHHHHHHCCCChHHhcCCcccc
Confidence 999999998877666665432111 1222211 00 0 0000011111111 111233333322222 123
Q ss_pred CCchhHHHHHHHHHHhhccccCCCceEEE-eccCCCC
Q 002754 532 SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (884)
Q Consensus 532 Sgge~~~~~l~~LL~~ld~~~~~~~VlVI-atTN~~~ 567 (884)
|||++.+..+...+ ....+++++ .+||..|
T Consensus 629 SgGqkqRvaLAraL------~~~p~lLLLDEPT~~LD 659 (718)
T PLN03073 629 SGGQKSRVAFAKIT------FKKPHILLLDEPSNHLD 659 (718)
T ss_pred CHHHHHHHHHHHHH------hcCCCEEEEcCCCCCCC
Confidence 99999999988877 446677777 7777644
No 178
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.1e-08 Score=104.16 Aligned_cols=99 Identities=32% Similarity=0.560 Sum_probs=70.0
Q ss_pred ccCC-cEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhh-hccccchhh-hhHHHHH----HhcCCcEEEhhhHHH
Q 002754 449 RIPG-GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGASRV-RSLYQEA----KDNAPSVVFIDELDA 521 (884)
Q Consensus 449 ~i~~-giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~-~~g~~~~~l-~~lf~~a----~~~~p~Il~iDEId~ 521 (884)
.+.+ ++||+||+|+|||.||+.||..++.||-..+...+.+. |+|....++ ..+++.+ .+...+|++|||||+
T Consensus 94 EL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDK 173 (408)
T COG1219 94 ELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDK 173 (408)
T ss_pred eeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhh
Confidence 3444 39999999999999999999999999999988887654 888876654 3344432 122346999999999
Q ss_pred hhhhcC---CCCCCCchhHHHHHHHHHHhhcc
Q 002754 522 VGRERG---LIKGSGGQERDATLNQLLVCLDG 550 (884)
Q Consensus 522 l~~~r~---~~~~Sgge~~~~~l~~LL~~ld~ 550 (884)
+..... ..++-.|+. +...||..+++
T Consensus 174 IarkSeN~SITRDVSGEG---VQQALLKiiEG 202 (408)
T COG1219 174 IARKSENPSITRDVSGEG---VQQALLKIIEG 202 (408)
T ss_pred hhccCCCCCcccccCchH---HHHHHHHHHcC
Confidence 975421 112223333 55667777776
No 179
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.5e-07 Score=104.65 Aligned_cols=95 Identities=34% Similarity=0.541 Sum_probs=66.6
Q ss_pred cEEEECCCCCCchhHHHHhhhhhccceeeeecchhhh-hhccccchhh-hhHHHHHH----hcCCcEEEhhhHHHhhhhc
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGASRV-RSLYQEAK----DNAPSVVFIDELDAVGRER 526 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~-~~~g~~~~~l-~~lf~~a~----~~~p~Il~iDEId~l~~~r 526 (884)
+|||+||+|+|||.|++.||.-+++||.-.+|..+.. .|+|.....+ ..+++.+. +..-.|+||||+|++....
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 3999999999999999999999999999999988754 4888765443 44444432 2334699999999997332
Q ss_pred CC---CCCCCchhHHHHHHHHHHhhcc
Q 002754 527 GL---IKGSGGQERDATLNQLLVCLDG 550 (884)
Q Consensus 527 ~~---~~~Sgge~~~~~l~~LL~~ld~ 550 (884)
.. .++-+|+. +...||..+++
T Consensus 308 ~~i~~~RDVsGEG---VQQaLLKllEG 331 (564)
T KOG0745|consen 308 ESIHTSRDVSGEG---VQQALLKLLEG 331 (564)
T ss_pred ccccccccccchh---HHHHHHHHhcc
Confidence 11 12233444 45555655555
No 180
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.67 E-value=4e-08 Score=112.25 Aligned_cols=121 Identities=31% Similarity=0.439 Sum_probs=74.2
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhhcc--ceeeeecc---------hhhhhh----cccc--chhhhhHHHHHHhc--CC
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISAS---------QFVEIY----VGVG--ASRVRSLYQEAKDN--AP 511 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el~~--~~~~is~s---------~~~~~~----~g~~--~~~l~~lf~~a~~~--~p 511 (884)
.++++|+||||||||++|+.+|..+.. .+..+.+- +++..+ .|.. .+.+..+...+... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 345899999999999999999987632 11122211 222111 1110 11123344555543 47
Q ss_pred cEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhc--------------------cccCCCceEEEeccCCCC----
Q 002754 512 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD--------------------GFEGRGNVITIASTNRPD---- 567 (884)
Q Consensus 512 ~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld--------------------~~~~~~~VlVIatTN~~~---- 567 (884)
++++||||+...... ++..++..|+ .+.-..|+.||+|.|..+
T Consensus 274 ~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 274 YVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred cEEEEehhhccCHHH-------------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 899999998765432 1222222221 244567899999999988
Q ss_pred CCCccCCCCCcccccccCCC
Q 002754 568 ILDPALVRPGRFDRKIFIPK 587 (884)
Q Consensus 568 ~LdpaLlr~gRfd~~I~~~~ 587 (884)
.+|.||+| ||. .|.+.+
T Consensus 341 ~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 341 VVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred hccHHHHh--hhh-eEEecC
Confidence 79999999 996 566654
No 181
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.64 E-value=9.2e-09 Score=98.30 Aligned_cols=104 Identities=29% Similarity=0.426 Sum_probs=58.5
Q ss_pred cEEEECCCCCCchhHHHHhhhhhccceeeeecch-hhh-hhcc-----ccchhh----hhHHHHHHhcCCcEEEhhhHHH
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ-FVE-IYVG-----VGASRV----RSLYQEAKDNAPSVVFIDELDA 521 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~-~~~-~~~g-----~~~~~l----~~lf~~a~~~~p~Il~iDEId~ 521 (884)
++||.|+||+|||++++++|..++..|.+|.+.. +.- ...| .....+ .-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 3799999999999999999999999999988753 221 1111 111111 1122 25999999988
Q ss_pred hhhhcCCCCCCCchhHHHHHHHHHHhhccc---------cCCCceEEEeccCCCC-----CCCccCCCCCcc
Q 002754 522 VGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD-----ILDPALVRPGRF 579 (884)
Q Consensus 522 l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~---------~~~~~VlVIatTN~~~-----~LdpaLlr~gRf 579 (884)
..++ +.+.||+.|.+. .-...++||+|-|..+ .++.+++. ||
T Consensus 74 appk--------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APPK--------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-HH--------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCHH--------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 7665 677777777642 1135589999999865 46667766 65
No 182
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.64 E-value=1.2e-07 Score=111.20 Aligned_cols=169 Identities=25% Similarity=0.359 Sum_probs=106.1
Q ss_pred EEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccchhhhhHHHHH----HhcCCcEEEhhhHHHhhhhcCCC
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEA----KDNAPSVVFIDELDAVGRERGLI 529 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a----~~~~p~Il~iDEId~l~~~r~~~ 529 (884)
+||+||||.||||||+.||..+|..++.|+.++-..... -...+..+.+.- ....|..+++||||.....
T Consensus 329 lLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~--v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~---- 402 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPM--VKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA---- 402 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHH--HHHHHHHHHhhccccccCCCcceEEEecccCCcHH----
Confidence 889999999999999999999999999999987433211 011121222111 1245777999999854311
Q ss_pred CCCCchhHHHHHHHHHHhhcc-------ccC---------CCc---eEEEeccCCCCCCCccCCCCCcccccccCCCCCh
Q 002754 530 KGSGGQERDATLNQLLVCLDG-------FEG---------RGN---VITIASTNRPDILDPALVRPGRFDRKIFIPKPGL 590 (884)
Q Consensus 530 ~~Sgge~~~~~l~~LL~~ld~-------~~~---------~~~---VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~ 590 (884)
.+..++..+.. -.. ..+ =-|||.+|... -|+|+.---|-.+|+|.+|..
T Consensus 403 ----------~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~ 470 (877)
T KOG1969|consen 403 ----------AVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQ 470 (877)
T ss_pred ----------HHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCCh
Confidence 34444443331 000 000 24778888654 466642213777899999988
Q ss_pred hhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q 002754 591 IGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR 643 (884)
Q Consensus 591 eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~ 643 (884)
....+-|+..+..-++. .|...|+..++ ++-.||+.++|.-...+....+
T Consensus 471 s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 471 SRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred hHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhccc
Confidence 88777777776555443 34444444443 4456999999988877765433
No 183
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.63 E-value=7.5e-07 Score=92.81 Aligned_cols=167 Identities=21% Similarity=0.298 Sum_probs=115.0
Q ss_pred cCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchh
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQF 487 (884)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~ 487 (884)
....+.+.+..|.+.++..+-+-...|.. .....++||+|..|||||+|+|++.++. +..+++|+-.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 34567788888988887666544443321 1123459999999999999999998876 567788877665
Q ss_pred hhhhccccchhhhhHHHHHHhcC-CcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc--CCCceEEEeccC
Q 002754 488 VEIYVGVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--GRGNVITIASTN 564 (884)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~a~~~~-p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~--~~~~VlVIatTN 564 (884)
.. +-.+++..+..+ .-|+|.|++- +- .+ ......|-..|+|-. ...||+|.+|+|
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-Fe--------~g----d~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLS-FE--------EG----DDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCC-CC--------CC----chHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 43 344666666543 4588889872 11 11 114445555666633 357899999999
Q ss_pred CCCCCCcc--------------------CCCCCcccccccCCCCChhhHHHHHHHHHccCCCC
Q 002754 565 RPDILDPA--------------------LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA 607 (884)
Q Consensus 565 ~~~~Ldpa--------------------Llr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~ 607 (884)
+...++.. +--+.||+..+.|++++.++-+.|+..++....+.
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 87655421 11134999999999999999999999999877654
No 184
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=2.2e-07 Score=110.72 Aligned_cols=61 Identities=28% Similarity=0.481 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 425 KIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 425 ~~~~~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+..+.++++...|.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~ 379 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWS 379 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 34455666666665556788889999887 88999999999999999999887777776544
No 185
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.4e-07 Score=109.42 Aligned_cols=176 Identities=24% Similarity=0.410 Sum_probs=120.4
Q ss_pred EEEECCCCCCchhHHHHhhhhh----------ccceeeeecchhhh--hhccccchhhhhHHHHHHhcCCcEEEhhhHHH
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVE--IYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 521 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~~--~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~ 521 (884)
-+|+|+||+|||.++.-||... +..++.++++.++. .|-|..+.+++.+.+.+....+.|+||||++.
T Consensus 194 PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHt 273 (786)
T COG0542 194 PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHT 273 (786)
T ss_pred CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 5899999999999999998754 45577888888764 48899999999999999988888999999999
Q ss_pred hhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCC-----CCCccCCCCCcccccccCCCCChhhHHHH
Q 002754 522 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEI 596 (884)
Q Consensus 522 l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~-----~LdpaLlr~gRfd~~I~~~~P~~eeR~~I 596 (884)
+.+.... +|+ .-..-|.|--.+ .++.+-+|++|..-+ .-|++|-| ||. .|.+.-|+.++-..|
T Consensus 274 iVGAG~~---~G~--a~DAaNiLKPaL----ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~I 341 (786)
T COG0542 274 IVGAGAT---EGG--AMDAANLLKPAL----ARGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAI 341 (786)
T ss_pred hcCCCcc---ccc--ccchhhhhHHHH----hcCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHH
Confidence 8654221 111 111223332222 356678887775432 35899999 998 899999999999999
Q ss_pred HHHHHccCCCC-----CcccHHHHHhh-----CCCCCHHHHHHHHHHHHHHHHHh
Q 002754 597 LKVHARKKPMA-----DDVDYLAVASM-----TDGMVGAELANIVEVAAINMMRD 641 (884)
Q Consensus 597 l~~~l~~~~~~-----~didl~~lA~~-----t~G~s~adL~~Lv~~A~~~A~~~ 641 (884)
++..-...... .|.-+...+.. +..+-|.--..++.+|+......
T Consensus 342 LrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 342 LRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred HHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhc
Confidence 98544332111 22222222222 34455555668888887655443
No 186
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.60 E-value=2.2e-07 Score=111.37 Aligned_cols=224 Identities=12% Similarity=0.117 Sum_probs=117.7
Q ss_pred ccccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeee-ec--
Q 002754 408 YLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI-SA-- 484 (884)
Q Consensus 408 ~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~i-s~-- 484 (884)
+.++..+..++++.+..+.+..+..++.... ++......++|+||||+||||+++++|+.++..+... +.
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~-------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~ 146 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQV-------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTL 146 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcc-------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 3445567778888887777766665544321 1111112389999999999999999999887655331 11
Q ss_pred -chhhhhh------------ccccchhhhhHHHHHHh----------cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHH
Q 002754 485 -SQFVEIY------------VGVGASRVRSLYQEAKD----------NAPSVVFIDELDAVGRERGLIKGSGGQERDATL 541 (884)
Q Consensus 485 -s~~~~~~------------~g~~~~~l~~lf~~a~~----------~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l 541 (884)
......| +......+..++..+.. ....||+|||++.+.... ...+
T Consensus 147 ~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~-----------~~~l 215 (637)
T TIGR00602 147 PDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD-----------TRAL 215 (637)
T ss_pred hcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh-----------HHHH
Confidence 0000000 00111223334443331 235699999998765321 1134
Q ss_pred HHHHH-hhccccCCCceEEEeccCCC------C-------CCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCC--
Q 002754 542 NQLLV-CLDGFEGRGNVITIASTNRP------D-------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP-- 605 (884)
Q Consensus 542 ~~LL~-~ld~~~~~~~VlVIatTN~~------~-------~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~-- 605 (884)
..+|. .... .....+|+|.+-|.. + .+.+++++..|.. +|.|++++.......|...+....
T Consensus 216 q~lLr~~~~e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~ 293 (637)
T TIGR00602 216 HEILRWKYVS-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKK 293 (637)
T ss_pred HHHHHHHhhc-CCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhc
Confidence 44444 2111 122223333332211 1 1336777533443 789999999997776666554321
Q ss_pred ------CCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHH-------HhCCCccCHHHHHHHH
Q 002754 606 ------MADDVDYLAVASMTDGMVGAELANIVEVAAINMM-------RDGRTEITTDDLLQAA 655 (884)
Q Consensus 606 ------~~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~-------~~~~~~It~edi~~Al 655 (884)
+.....+..++....| |++.+++.-...+. ..+...++..++..+.
T Consensus 294 ~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~ 352 (637)
T TIGR00602 294 NGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSK 352 (637)
T ss_pred cccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhcc
Confidence 1122345666665554 55555554333322 2233456666666554
No 187
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.60 E-value=3.4e-07 Score=110.12 Aligned_cols=103 Identities=18% Similarity=0.275 Sum_probs=67.4
Q ss_pred CceEEEeccCCC--CCCCccCCCCCccc---ccccCCC--C-ChhhHHHHHHH---HHccCCCCCcccH---HHHH---h
Q 002754 555 GNVITIASTNRP--DILDPALVRPGRFD---RKIFIPK--P-GLIGRMEILKV---HARKKPMADDVDY---LAVA---S 617 (884)
Q Consensus 555 ~~VlVIatTN~~--~~LdpaLlr~gRfd---~~I~~~~--P-~~eeR~~Il~~---~l~~~~~~~didl---~~lA---~ 617 (884)
.++.||+++|.. ..++|.|+. ||+ ..+.|+. | +.+.+..+++. .++..+....++- ..+. .
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~ 344 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQ 344 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH
Confidence 367889988864 578999998 998 6566543 3 45555555443 2322222223332 2222 1
Q ss_pred hCC------CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 002754 618 MTD------GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 659 (884)
Q Consensus 618 ~t~------G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~ 659 (884)
+.. ..+.++|.++++.|...|..++...|+.+|+.+|++...
T Consensus 345 R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 345 RRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 111 245799999999998888888888999999999987553
No 188
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.56 E-value=5.6e-07 Score=100.99 Aligned_cols=131 Identities=21% Similarity=0.345 Sum_probs=85.5
Q ss_pred CcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcc-----------ccCCCceEEEeccCCCC-CCCccCCCCCc
Q 002754 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-----------FEGRGNVITIASTNRPD-ILDPALVRPGR 578 (884)
Q Consensus 511 p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~-----------~~~~~~VlVIatTN~~~-~LdpaLlr~gR 578 (884)
-+|+++||+..+... +.+.||..+.. +....++++|+|.|.-. .|-|.|+. |
T Consensus 145 RGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--R 208 (423)
T COG1239 145 RGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--R 208 (423)
T ss_pred CCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--h
Confidence 459999999776543 66677765543 22346799999999864 68888988 9
Q ss_pred ccccccCCCC-ChhhHHHHHHHHHccCCCC-------------------------Ccc-----cHHHHHhh----CCCCC
Q 002754 579 FDRKIFIPKP-GLIGRMEILKVHARKKPMA-------------------------DDV-----DYLAVASM----TDGMV 623 (884)
Q Consensus 579 fd~~I~~~~P-~~eeR~~Il~~~l~~~~~~-------------------------~di-----dl~~lA~~----t~G~s 623 (884)
|+..|.+..| +.++|.+|+...+.-.... +.+ -...++.. ...-.
T Consensus 209 fg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~ 288 (423)
T COG1239 209 FGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGH 288 (423)
T ss_pred hcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCC
Confidence 9999988765 6778988887655321100 000 01111111 11113
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 002754 624 GAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (884)
Q Consensus 624 ~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~ 658 (884)
.+|+ .+++.|...|...|+..++.+|+.+|....
T Consensus 289 radi-~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~ 322 (423)
T COG1239 289 RADI-VVVRAAKALAALRGRTEVEEEDIREAAELA 322 (423)
T ss_pred chhh-HHHHHHHHHHHhcCceeeehhhHHHHHhhh
Confidence 3444 566677777888899999999999988765
No 189
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.56 E-value=3.4e-07 Score=109.16 Aligned_cols=206 Identities=20% Similarity=0.185 Sum_probs=116.7
Q ss_pred ccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh
Q 002754 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI 490 (884)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~ 490 (884)
...|....|.......+.+.+..+.. ....|+|+|++|||||++|++|.... +.+|+.++|+.+...
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 34566777777777666665554432 12348999999999999999998764 569999999876332
Q ss_pred -----hccccchhh-------hhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc--C---
Q 002754 491 -----YVGVGASRV-------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--G--- 553 (884)
Q Consensus 491 -----~~g~~~~~l-------~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~--~--- 553 (884)
.+|...+.+ ...++. ...+++|||||+.+... ....|+..++... .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA--------------FQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH--------------HHHHHHHHHhcCcEEECCC
Confidence 223221111 011222 23568999999998655 5566666665311 0
Q ss_pred ----CCceEEEeccCCCC-------CCCccCCCCCcccccccCCCCChhh----HHHHHHHHHccC----CCCCcccH--
Q 002754 554 ----RGNVITIASTNRPD-------ILDPALVRPGRFDRKIFIPKPGLIG----RMEILKVHARKK----PMADDVDY-- 612 (884)
Q Consensus 554 ----~~~VlVIatTN~~~-------~LdpaLlr~gRfd~~I~~~~P~~ee----R~~Il~~~l~~~----~~~~didl-- 612 (884)
..++.+|++|+..- .+.+.|.. |+. .+.+..|...+ ...++..++... +....++-
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 12478888876531 12233333 333 33334444443 444555555422 11122333
Q ss_pred -HHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 002754 613 -LAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (884)
Q Consensus 613 -~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~ 652 (884)
..|....-.-+.++|.++++.|+.. .....|+.+|+.
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~---~~~~~I~~~~l~ 439 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATL---SRSGTITRSDFS 439 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHh---CCCCcccHHHCc
Confidence 3334433233456666667666543 344578888874
No 190
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.55 E-value=2.5e-07 Score=95.61 Aligned_cols=208 Identities=17% Similarity=0.237 Sum_probs=117.6
Q ss_pred ccccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh-cc----ceeee
Q 002754 408 YLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-GV----NFFSI 482 (884)
Q Consensus 408 ~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el-~~----~~~~i 482 (884)
+.++..+..+.++.|-++.+..+.-+...-.. .+++|.||||+||||-+.+||+++ |. .+.++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnm------------P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNM------------PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcCCC------------CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 34556777888999988888766654442111 238999999999999999999876 32 23344
Q ss_pred ecchhhhhhccccchhhhhHHHHHH-hcCC---cEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceE
Q 002754 483 SASQFVEIYVGVGASRVRSLYQEAK-DNAP---SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVI 558 (884)
Q Consensus 483 s~s~~~~~~~g~~~~~l~~lf~~a~-~~~p---~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~Vl 558 (884)
+.++-... +.-...+ ..|.+-+ ..+| .|+++||.|++... ....|-..|+-. ....-
T Consensus 85 NASdeRGI--DvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT~g--------------AQQAlRRtMEiy--S~ttR 145 (333)
T KOG0991|consen 85 NASDERGI--DVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMTAG--------------AQQALRRTMEIY--SNTTR 145 (333)
T ss_pred cCcccccc--HHHHHHH-HHHHHhhccCCCCceeEEEeeccchhhhH--------------HHHHHHHHHHHH--cccch
Confidence 44432111 1111112 2333322 2233 48999999987533 233333333321 23345
Q ss_pred EEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 002754 559 TIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAIN 637 (884)
Q Consensus 559 VIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL~~Lv~~A~~~ 637 (884)
|..++|..+.+-..+.+ |.- .+.|...+..+.+.-+....+.-.+. .+.-++.+.-...| |.++.+|.- +
T Consensus 146 FalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNnL--Q 216 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNNL--Q 216 (333)
T ss_pred hhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHHH--H
Confidence 67778888877777777 433 44555555555443333332222221 23335555555554 555665543 3
Q ss_pred HHHhCCCccCHHHHHHHH
Q 002754 638 MMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 638 A~~~~~~~It~edi~~Al 655 (884)
+...+-..|+.+.+...+
T Consensus 217 st~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 217 STVNGFGLVNQENVFKVC 234 (333)
T ss_pred HHhccccccchhhhhhcc
Confidence 556677788888887654
No 191
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=3e-07 Score=102.27 Aligned_cols=134 Identities=19% Similarity=0.263 Sum_probs=92.6
Q ss_pred ccCCcEEEECCCCCCchhHHHHhhhhhccce--eeeecchh-----h------hh-hc----cc--cchhhhhHHHHHHh
Q 002754 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--FSISASQF-----V------EI-YV----GV--GASRVRSLYQEAKD 508 (884)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~~--~~is~s~~-----~------~~-~~----g~--~~~~l~~lf~~a~~ 508 (884)
+++.+++|+||.|+||+++|+.+|..+-..- ..-.|+.- + +. ++ |. +...++.+.+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 4567799999999999999999998652210 00011110 0 00 01 10 12234554444432
Q ss_pred ----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCccccccc
Q 002754 509 ----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIF 584 (884)
Q Consensus 509 ----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~ 584 (884)
....|++||++|.+... ..|.||..++ .+..++++|.+|+.++.+.|.+++ |.. .+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC~-~~~ 162 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTEA--------------AANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RCQ-TWL 162 (325)
T ss_pred ccccCCceEEEEechhhhCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hce-EEe
Confidence 33468999999998655 7899999999 567889999999999999999999 443 889
Q ss_pred CCCCChhhHHHHHHHHH
Q 002754 585 IPKPGLIGRMEILKVHA 601 (884)
Q Consensus 585 ~~~P~~eeR~~Il~~~l 601 (884)
|++|+.++..+.+....
T Consensus 163 ~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 163 IHPPEEQQALDWLQAQS 179 (325)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999998887777553
No 192
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.54 E-value=1e-07 Score=98.61 Aligned_cols=46 Identities=39% Similarity=0.629 Sum_probs=32.4
Q ss_pred cccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhc
Q 002754 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG 476 (884)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~ 476 (884)
|.++.|....+..+.-+.. | ..+++|+||||||||++|+.+...+.
T Consensus 2 f~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 6778888877755543322 1 24699999999999999999998663
No 193
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=2.8e-07 Score=102.46 Aligned_cols=179 Identities=20% Similarity=0.243 Sum_probs=113.4
Q ss_pred ccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccc-----------------
Q 002754 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----------------- 478 (884)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~----------------- 478 (884)
.|+++.|...++..+...+.. -+++..+||+||.|+||+++|.++|..+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 466777877777666655542 2456779999999999999999999865221
Q ss_pred -eeeeecchhhhh---------hcc-------c-cchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchh
Q 002754 479 -FFSISASQFVEI---------YVG-------V-GASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQE 536 (884)
Q Consensus 479 -~~~is~s~~~~~---------~~g-------~-~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~ 536 (884)
+..+........ ..| . ....++.+.+.+.. ....|++||++|.+...
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~----------- 139 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA----------- 139 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH-----------
Confidence 111111000000 000 0 00123444444332 33568999998887544
Q ss_pred HHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHH
Q 002754 537 RDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVA 616 (884)
Q Consensus 537 ~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA 616 (884)
..|.||..|+.. . ++++|..|+.++.+.|.+++ |. ..+.|++|+.++..+++........ .+.+...++
T Consensus 140 ---aaNaLLK~LEEP--p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~ 208 (314)
T PRK07399 140 ---AANALLKTLEEP--G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELL 208 (314)
T ss_pred ---HHHHHHHHHhCC--C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHH
Confidence 778899999853 3 55677777788999999999 54 3899999999999999887643211 122346677
Q ss_pred hhCCCCCHHHH
Q 002754 617 SMTDGMVGAEL 627 (884)
Q Consensus 617 ~~t~G~s~adL 627 (884)
....|-.+.-+
T Consensus 209 ~~a~Gs~~~al 219 (314)
T PRK07399 209 ALAQGSPGAAI 219 (314)
T ss_pred HHcCCCHHHHH
Confidence 77766555443
No 194
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=3e-07 Score=102.94 Aligned_cols=155 Identities=20% Similarity=0.227 Sum_probs=101.0
Q ss_pred cccCCcEEEECCCCCCchhHHHHhhhhhcc--ceeeeecch-----hhh------h-hc-c------ccchhhhhHHHHH
Q 002754 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQ-----FVE------I-YV-G------VGASRVRSLYQEA 506 (884)
Q Consensus 448 ~~i~~giLL~GPpGtGKTtLakaLA~el~~--~~~~is~s~-----~~~------~-~~-g------~~~~~l~~lf~~a 506 (884)
-++|.++||+||.|+||+++|.++|..+-. +.....|+. .+. . ++ . -....++.+.+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 356777999999999999999999986521 110001111 000 0 00 0 0112345554444
Q ss_pred Hh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCccccc
Q 002754 507 KD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRK 582 (884)
Q Consensus 507 ~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~ 582 (884)
.. ....|++||++|.+... ..|.||..|+ .+..+++||..|+.++.+.|.+++ |.. .
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~ 161 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTDA--------------AANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-L 161 (334)
T ss_pred hhccccCCceEEEEcchHhhCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-c
Confidence 32 34569999999998655 7899999999 567889999999999999999999 554 7
Q ss_pred ccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHH
Q 002754 583 IFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGA 625 (884)
Q Consensus 583 I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~a 625 (884)
+.|++|+.++....+.... +.. ......++..+.|-.+.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGAPGA 200 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHHH
Confidence 8999999888777765431 222 22234455566654443
No 195
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.53 E-value=1.3e-06 Score=95.08 Aligned_cols=214 Identities=18% Similarity=0.291 Sum_probs=122.6
Q ss_pred CchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh---------ccceeeeecchhhhh--
Q 002754 422 GLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQFVEI-- 490 (884)
Q Consensus 422 gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el---------~~~~~~is~s~~~~~-- 490 (884)
|+.....-++.+...+..+.. .-..+++|+|++|.|||++++..+..- ..|++.+.+...-+.
T Consensus 38 gY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 38 GYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred cCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 445555444544444444421 112459999999999999999998643 235555554322111
Q ss_pred -h------cc--c----cchh-hhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCc
Q 002754 491 -Y------VG--V----GASR-VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN 556 (884)
Q Consensus 491 -~------~g--~----~~~~-l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~ 556 (884)
| +| . .... -..+..-.+...+.+++|||++.++... ..+.+.+++.| ..+.+ .-.-.
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs-------~~~qr~~Ln~L-K~L~N-eL~ip 182 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS-------YRKQREFLNAL-KFLGN-ELQIP 182 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc-------HHHHHHHHHHH-HHHhh-ccCCC
Confidence 1 11 0 1111 1233455667788899999999976431 22333344433 23321 11223
Q ss_pred eEEEeccCCCC--CCCccCCCCCcccccccCCCCChh-hHHHHHHHHHccCCCC--Cccc----HHHHHhhCCCCCHHHH
Q 002754 557 VITIASTNRPD--ILDPALVRPGRFDRKIFIPKPGLI-GRMEILKVHARKKPMA--DDVD----YLAVASMTDGMVGAEL 627 (884)
Q Consensus 557 VlVIatTN~~~--~LdpaLlr~gRfd~~I~~~~P~~e-eR~~Il~~~l~~~~~~--~did----l~~lA~~t~G~s~adL 627 (884)
++.++|..-.. .-|+.+-+ ||+ .+.+|....+ +-..++..+-...++. +.+. ...+-..|.|.+| ++
T Consensus 183 iV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l 258 (302)
T PF05621_consen 183 IVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-EL 258 (302)
T ss_pred eEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HH
Confidence 44445432111 23677767 998 6667764333 3445555554444432 2222 2445566777665 58
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHH
Q 002754 628 ANIVEVAAINMMRDGRTEITTDDLLQA 654 (884)
Q Consensus 628 ~~Lv~~A~~~A~~~~~~~It~edi~~A 654 (884)
..+++.|+..|.+.|...||.+.+...
T Consensus 259 ~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 259 SRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 899999999999999999999998764
No 196
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.6e-07 Score=100.07 Aligned_cols=84 Identities=27% Similarity=0.407 Sum_probs=61.6
Q ss_pred CcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc--------cCCCceEEEecc----CCCCCCCccCCCCCc
Q 002754 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--------EGRGNVITIAST----NRPDILDPALVRPGR 578 (884)
Q Consensus 511 p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~--------~~~~~VlVIatT----N~~~~LdpaLlr~gR 578 (884)
-+|+||||||++....+ .++++-...-+...||-.++|. ....+++||++. ..|..|-|.|.. |
T Consensus 251 ~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--R 326 (444)
T COG1220 251 NGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--R 326 (444)
T ss_pred cCeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--C
Confidence 35999999999986543 1122333445677788777763 235679999877 457778888854 9
Q ss_pred ccccccCCCCChhhHHHHHH
Q 002754 579 FDRKIFIPKPGLIGRMEILK 598 (884)
Q Consensus 579 fd~~I~~~~P~~eeR~~Il~ 598 (884)
|+..+.+...+.+.-..||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999998888874
No 197
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=1.3e-07 Score=105.92 Aligned_cols=133 Identities=23% Similarity=0.279 Sum_probs=89.6
Q ss_pred ccCCcEEEECCCCCCchhHHHHhhhhhccce--e-eeecchh-----hh------h-hcc--------------------
Q 002754 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--F-SISASQF-----VE------I-YVG-------------------- 493 (884)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~~--~-~is~s~~-----~~------~-~~g-------------------- 493 (884)
++|.++||+||+|+||+++|+.+|..+.... . .-.|+.- +. . ++.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 7788899999999999999999998763321 0 0011110 00 0 000
Q ss_pred -------------ccchhhhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCc
Q 002754 494 -------------VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN 556 (884)
Q Consensus 494 -------------~~~~~l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~ 556 (884)
-....++.+.+.+.. ....|++||++|.+... ..|.||..++ .+..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA--------------AANALLKTLE--EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH--------------HHHHHHHHhc--CCCcC
Confidence 001122333333221 22346777777776544 7899999999 56788
Q ss_pred eEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHH
Q 002754 557 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 600 (884)
Q Consensus 557 VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~ 600 (884)
++||.+|+.++.+.|.+++ |. ..|.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999 65 48999999999888888654
No 198
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.53 E-value=8.8e-07 Score=99.19 Aligned_cols=176 Identities=22% Similarity=0.238 Sum_probs=97.2
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh-----hccccchhh-------hhHHHHHHhcCCcEEEh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFI 516 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~l-------~~lf~~a~~~~p~Il~i 516 (884)
..|+|+|++||||+++|++|.... +.+|+.++|+.+... .+|...+.+ ..+|+.+ ..+++||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 348999999999999999997644 569999999865322 223221111 1123332 3568999
Q ss_pred hhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc---------CCCceEEEeccCCC-------CCCCccCCCCCccc
Q 002754 517 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGRFD 580 (884)
Q Consensus 517 DEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~---------~~~~VlVIatTN~~-------~~LdpaLlr~gRfd 580 (884)
|||+.+... ....|+..++... ...++.||++||.. ..+.+.|.. ||.
T Consensus 100 dei~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~ 163 (329)
T TIGR02974 100 DELATASLL--------------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA 163 (329)
T ss_pred CChHhCCHH--------------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc
Confidence 999998654 5666666665321 12457888888653 123344444 553
Q ss_pred ccccCCCCChhhHHH----HHHHHHcc----CCCC--CcccHHHHHhhCCCC---CHHHHHHHHHHHHHHHHHhCCCccC
Q 002754 581 RKIFIPKPGLIGRME----ILKVHARK----KPMA--DDVDYLAVASMTDGM---VGAELANIVEVAAINMMRDGRTEIT 647 (884)
Q Consensus 581 ~~I~~~~P~~eeR~~----Il~~~l~~----~~~~--~didl~~lA~~t~G~---s~adL~~Lv~~A~~~A~~~~~~~It 647 (884)
.+.|..|...+|.+ ++..++.. .+.. ..++-..+......- +.++|.++++.++..+ ....++
T Consensus 164 -~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~---~~~~~~ 239 (329)
T TIGR02974 164 -FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH---GLEEAP 239 (329)
T ss_pred -chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC---CCCccc
Confidence 34455555555543 44444432 1111 233433343333322 3455555565555332 223455
Q ss_pred HHH
Q 002754 648 TDD 650 (884)
Q Consensus 648 ~ed 650 (884)
.++
T Consensus 240 ~~~ 242 (329)
T TIGR02974 240 IDE 242 (329)
T ss_pred hhh
Confidence 555
No 199
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.5e-07 Score=103.70 Aligned_cols=137 Identities=24% Similarity=0.457 Sum_probs=97.4
Q ss_pred cEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhcccc----chhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCC
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG----ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~----~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~ 528 (884)
++||.||||+|||+||-.+|...+.||+.+-..+-+ +|.. ...+..+|+.+.+.+-+|+++|+|+.+..--
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v-- 614 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV-- 614 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc--
Confidence 499999999999999999999999999987433322 2222 2346889999999999999999999885321
Q ss_pred CCCCCchhHHHHHHHHHHhhccccCCC-ceEEEeccCCCCCCC-ccCCCCCcccccccCCCCCh-hhHHHHHH
Q 002754 529 IKGSGGQERDATLNQLLVCLDGFEGRG-NVITIASTNRPDILD-PALVRPGRFDRKIFIPKPGL-IGRMEILK 598 (884)
Q Consensus 529 ~~~Sgge~~~~~l~~LL~~ld~~~~~~-~VlVIatTN~~~~Ld-paLlr~gRfd~~I~~~~P~~-eeR~~Il~ 598 (884)
.-|-...+.++..|+..+....+.+ ..+|++||...+.+. -.++. .|+..|.+|..+. ++..+++.
T Consensus 615 --pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 615 --PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred --ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 1233344567777777777655443 467778887655433 24445 7999999998765 55666654
No 200
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.49 E-value=6.1e-07 Score=100.41 Aligned_cols=189 Identities=21% Similarity=0.219 Sum_probs=103.8
Q ss_pred ccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh----
Q 002754 418 SDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI---- 490 (884)
Q Consensus 418 ~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~---- 490 (884)
++..|-......+.+.+..+.. .+..|+|+|++||||+++|++|.... +.+|+.++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~ 75 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS 75 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHH
Confidence 3455556666555555444321 13348999999999999999997644 468999999875322
Q ss_pred -hccccchhh-------hhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc--C-------
Q 002754 491 -YVGVGASRV-------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--G------- 553 (884)
Q Consensus 491 -~~g~~~~~l-------~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~--~------- 553 (884)
.+|.....+ ...++. ...+.+||||++.+... ....|+..++... .
T Consensus 76 ~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 76 ELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPML--------------VQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCcee
Confidence 223221100 112322 33568999999998654 5566666554311 1
Q ss_pred CCceEEEeccCCC-------CCCCccCCCCCcccccccCCCCChhhHH----HHHHHHHcc----CCCC--CcccHHHHH
Q 002754 554 RGNVITIASTNRP-------DILDPALVRPGRFDRKIFIPKPGLIGRM----EILKVHARK----KPMA--DDVDYLAVA 616 (884)
Q Consensus 554 ~~~VlVIatTN~~-------~~LdpaLlr~gRfd~~I~~~~P~~eeR~----~Il~~~l~~----~~~~--~didl~~lA 616 (884)
..++.||++|+.. ..+.+.|.. ||. .+.+..|...+|. .++..++.. .+.. ..++-..+.
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~ 215 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARE 215 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 1357888887653 234445554 553 3344455555554 344444422 1111 234444444
Q ss_pred hhCCCC---CHHHHHHHHHHHHH
Q 002754 617 SMTDGM---VGAELANIVEVAAI 636 (884)
Q Consensus 617 ~~t~G~---s~adL~~Lv~~A~~ 636 (884)
.....- +-++|.++++.|+.
T Consensus 216 ~L~~y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 216 TLLNYRWPGNIRELKNVVERSVY 238 (326)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHH
Confidence 333323 34556666666553
No 201
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.49 E-value=1.9e-06 Score=105.46 Aligned_cols=124 Identities=22% Similarity=0.254 Sum_probs=72.2
Q ss_pred cEEEECCCCCCchhHHHHhhhhhc-------cceeeeecchhhhhhccccchhhhhHHH--HHHhcCCcEEEhhhHHHhh
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAG-------VNFFSISASQFVEIYVGVGASRVRSLYQ--EAKDNAPSVVFIDELDAVG 523 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~-------~~~~~is~s~~~~~~~g~~~~~l~~lf~--~a~~~~p~Il~iDEId~l~ 523 (884)
.|||+|.||||||++|++++.... .++..+.+..... +.+...+.. .++ .+.....++++|||++.+.
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~--~le~GaLvlAdgGtL~IDEidkms 570 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRA--MIQPGAVVLANGGVCCIDELDKCH 570 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcc--cccCCcEEEcCCCeEEecchhhCC
Confidence 499999999999999999987543 2222222222211 011000000 000 0111234689999999985
Q ss_pred hhcCCCCCCCchhHHHHHHHHHHhhcccc-----------CCCceEEEeccCCCC-------------CCCccCCCCCcc
Q 002754 524 RERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALVRPGRF 579 (884)
Q Consensus 524 ~~r~~~~~Sgge~~~~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~~-------------~LdpaLlr~gRf 579 (884)
.. ....|+..|+.-. -+.++.||+++|... .++++|++ ||
T Consensus 571 ~~--------------~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RF 634 (915)
T PTZ00111 571 NE--------------SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RF 634 (915)
T ss_pred HH--------------HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hh
Confidence 44 4455555554311 135689999999852 37889999 99
Q ss_pred ccccc-CCCCChhhHHH
Q 002754 580 DRKIF-IPKPGLIGRME 595 (884)
Q Consensus 580 d~~I~-~~~P~~eeR~~ 595 (884)
|.++. ++.|+.+.=..
T Consensus 635 DLIf~l~D~~d~~~D~~ 651 (915)
T PTZ00111 635 DLIYLVLDHIDQDTDQL 651 (915)
T ss_pred cEEEEecCCCChHHHHH
Confidence 96653 45566544333
No 202
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.48 E-value=7.3e-07 Score=106.38 Aligned_cols=192 Identities=15% Similarity=0.093 Sum_probs=126.4
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhcc--ceeeeecchhhhhhccccc--hhh---hhHHH--HHHhcCCcEEEhhhHHHh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEIYVGVGA--SRV---RSLYQ--EAKDNAPSVVFIDELDAV 522 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~--~~~~is~s~~~~~~~g~~~--~~l---~~lf~--~a~~~~p~Il~iDEId~l 522 (884)
+||+|.|+.|+|||+++++++.-+.. ||..+..+-.....+|... ..+ ...++ .+...+..|+|+||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 67999999999999999999998754 7776655544444444320 000 00010 011223469999999877
Q ss_pred hhhcCCCCCCCchhHHHHHHHHHHhhccc-----------cCCCceEEEeccCCC---CCCCccCCCCCcccccccCCCC
Q 002754 523 GRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGNVITIASTNRP---DILDPALVRPGRFDRKIFIPKP 588 (884)
Q Consensus 523 ~~~r~~~~~Sgge~~~~~l~~LL~~ld~~-----------~~~~~VlVIatTN~~---~~LdpaLlr~gRfd~~I~~~~P 588 (884)
... ++..|++.|+.- .-..++++|++.|.. ..|+++++. ||+..|.++.|
T Consensus 106 ~~~--------------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 106 EPG--------------TAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred CHH--------------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 655 888999888752 113568888875432 348889999 99999999987
Q ss_pred ChhhHH-------HHHH--HHHccCCCCCcccHHHHHhh--CCCC-CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 589 GLIGRM-------EILK--VHARKKPMADDVDYLAVASM--TDGM-VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 589 ~~eeR~-------~Il~--~~l~~~~~~~didl~~lA~~--t~G~-s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
+..+.. +|.. ..+.+..+.+ ..+..++.. .-|. |.+-...+++.|..+|..+++..|+.+||.+|+.
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v~~-~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~ 248 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGPPP-EAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAAR 248 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 755321 2332 2333333322 222222221 2354 5566668999999999999999999999999998
Q ss_pred HHHc
Q 002754 657 IEER 660 (884)
Q Consensus 657 ~~~~ 660 (884)
.+..
T Consensus 249 lvL~ 252 (584)
T PRK13406 249 LVLA 252 (584)
T ss_pred HHHH
Confidence 7753
No 203
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.47 E-value=6.3e-07 Score=103.01 Aligned_cols=206 Identities=20% Similarity=0.257 Sum_probs=130.1
Q ss_pred cccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh---
Q 002754 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI--- 490 (884)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~--- 490 (884)
.....|-......+.+.+..+... ...|+|+|.+||||-.+|++|-... +.||+.++|+.+-..
T Consensus 140 ~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~E 209 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLE 209 (464)
T ss_pred cCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHH
Confidence 445566677777777777765433 2248999999999999999998755 569999999876443
Q ss_pred --hccccchhh-------hhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc---------
Q 002754 491 --YVGVGASRV-------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------- 552 (884)
Q Consensus 491 --~~g~~~~~l-------~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~--------- 552 (884)
.+|...+.+ ...|+.+ ..+.+|||||..+... +...||..+..-.
T Consensus 210 SELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl~--------------~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 210 SELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPLE--------------LQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCCHH--------------HHHHHHHHHHcCeeEecCCCcc
Confidence 445433321 1133333 3458999999887544 6677777666311
Q ss_pred CCCceEEEeccCCC--CC-----CCccCCCCCcccccccCCCCChhhHHH----HHHHHHcc----CC-CCCcccHHHHH
Q 002754 553 GRGNVITIASTNRP--DI-----LDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARK----KP-MADDVDYLAVA 616 (884)
Q Consensus 553 ~~~~VlVIatTN~~--~~-----LdpaLlr~gRfd~~I~~~~P~~eeR~~----Il~~~l~~----~~-~~~didl~~lA 616 (884)
-.-+|-||++||.. +. +-+.|.- |+. ++.+..|...+|.+ ++.+++.. .+ -...++-..+.
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~ 349 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALA 349 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 12368899999863 11 2223333 443 67777888888765 33444432 22 23456666777
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 002754 617 SMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (884)
Q Consensus 617 ~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~ 652 (884)
.....-.|+.++.|-|.+...+.......|+.+++.
T Consensus 350 ~L~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~ 385 (464)
T COG2204 350 ALLAYDWPGNVRELENVVERAVILSEGPEIEVEDLP 385 (464)
T ss_pred HHHhCCCChHHHHHHHHHHHHHhcCCccccchhhcc
Confidence 776666666666665555544555566678887765
No 204
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=3.6e-07 Score=102.30 Aligned_cols=132 Identities=20% Similarity=0.194 Sum_probs=88.4
Q ss_pred ccCCcEEEECCCCCCchhHHHHhhhhhccce--eeeecc------hhh-----hh-hc---cc--cchhhhhHHHHHHh-
Q 002754 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNF--FSISAS------QFV-----EI-YV---GV--GASRVRSLYQEAKD- 508 (884)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~~--~~is~s------~~~-----~~-~~---g~--~~~~l~~lf~~a~~- 508 (884)
++|..+||+||+|+|||++|+.+|..+-..- ....|+ .+. +. ++ |. ....++.+.+.+..
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~ 105 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKS 105 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhC
Confidence 5667789999999999999999998753211 000000 000 00 00 11 11233444444331
Q ss_pred ---cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccC
Q 002754 509 ---NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFI 585 (884)
Q Consensus 509 ---~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~ 585 (884)
....|++||++|.+... ..|.||..|+ ....++++|.+|+.+..+.|.++++| . +++|
T Consensus 106 ~~~~~~kvviI~~a~~~~~~--------------a~NaLLK~LE--EPp~~~~~Il~t~~~~~ll~TIrSRc--~-~i~~ 166 (329)
T PRK08058 106 GVESNKKVYIIEHADKMTAS--------------AANSLLKFLE--EPSGGTTAILLTENKHQILPTILSRC--Q-VVEF 166 (329)
T ss_pred CcccCceEEEeehHhhhCHH--------------HHHHHHHHhc--CCCCCceEEEEeCChHhCcHHHHhhc--e-eeeC
Confidence 23459999999988654 7889999999 45677888888888889999999944 3 8999
Q ss_pred CCCChhhHHHHHHH
Q 002754 586 PKPGLIGRMEILKV 599 (884)
Q Consensus 586 ~~P~~eeR~~Il~~ 599 (884)
++|+.++...+++.
T Consensus 167 ~~~~~~~~~~~L~~ 180 (329)
T PRK08058 167 RPLPPESLIQRLQE 180 (329)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999888777753
No 205
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.47 E-value=1.2e-06 Score=93.10 Aligned_cols=131 Identities=22% Similarity=0.243 Sum_probs=90.2
Q ss_pred cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCC-------------CCCCCccCCC
Q 002754 509 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR-------------PDILDPALVR 575 (884)
Q Consensus 509 ~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~-------------~~~LdpaLlr 575 (884)
.-|+|+||||++-+.-. .+..|-..++.. -.-+||.+||+ |..+++.|+.
T Consensus 295 lvPGVLFIDEVhMLDiE--------------cFTyL~kalES~---iaPivifAsNrG~~~irGt~d~~sPhGip~dllD 357 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLDIE--------------CFTYLHKALESP---IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD 357 (456)
T ss_pred hcCcceEeeehhhhhhH--------------HHHHHHHHhcCC---CCceEEEecCCcceeecCCcCCCCCCCCCHHHhh
Confidence 34788999998776433 455555555532 12245555654 4557777877
Q ss_pred CCcccccccCCCCChhhHHHHHHHHHccCCCCC-cccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 002754 576 PGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 654 (884)
Q Consensus 576 ~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~-didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~A 654 (884)
|+- +|..-+++.++.++|++.+...-.+.- +.-+..++.....-|-+-..+|+.-|...|...|+..|+.+|+.++
T Consensus 358 --Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 358 --RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred --hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 653 566667889999999998876554432 2335666766666666666788888888898999999999999998
Q ss_pred HHHHH
Q 002754 655 AQIEE 659 (884)
Q Consensus 655 l~~~~ 659 (884)
-+...
T Consensus 435 ~~Lf~ 439 (456)
T KOG1942|consen 435 TELFL 439 (456)
T ss_pred HHHHH
Confidence 77553
No 206
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.45 E-value=1.4e-06 Score=103.02 Aligned_cols=208 Identities=20% Similarity=0.274 Sum_probs=118.6
Q ss_pred cccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhh-----------hccceeeee
Q 002754 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGE-----------AGVNFFSIS 483 (884)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~e-----------l~~~~~~is 483 (884)
..|++..|....+..+.+.+..+... +..|+|+|++||||+++|++|-.. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 35677778777777777766654322 234899999999999999999776 367999999
Q ss_pred cchhhhh-----hccccchhh--------hhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcc
Q 002754 484 ASQFVEI-----YVGVGASRV--------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 550 (884)
Q Consensus 484 ~s~~~~~-----~~g~~~~~l--------~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~ 550 (884)
|+.+.+. .+|...+.+ ..+|+.+ ..+.+|||||+.+... ....|+..++.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~--------------~Q~kLl~~L~e 348 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPLP--------------LQTRLLRVLEE 348 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCHH--------------HHHHHHhhhhc
Confidence 9875432 233222111 1244433 3458999999998655 56666666653
Q ss_pred cc---------CCCceEEEeccCCCCCCCccCCCCCcccc-------cccCCCCChhhHHH----HHHHHHcc----CC-
Q 002754 551 FE---------GRGNVITIASTNRPDILDPALVRPGRFDR-------KIFIPKPGLIGRME----ILKVHARK----KP- 605 (884)
Q Consensus 551 ~~---------~~~~VlVIatTN~~~~LdpaLlr~gRfd~-------~I~~~~P~~eeR~~----Il~~~l~~----~~- 605 (884)
.. -..++-||++||..- . .+...|+|.. .+.+..|...+|.+ ++..++.. ..
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L--~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDL--E-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCH--H-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 11 123567888886531 1 1112233331 45566676666653 44455543 11
Q ss_pred -CCCccc------HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 002754 606 -MADDVD------YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (884)
Q Consensus 606 -~~~did------l~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~ 652 (884)
+..+.- +..|..+.---+-++|.+++++++..+.......|+.+++.
T Consensus 426 ~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 426 PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 111110 01222222223457777777777654322222456666653
No 207
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=6.3e-07 Score=99.50 Aligned_cols=156 Identities=23% Similarity=0.319 Sum_probs=100.3
Q ss_pred cccCCcEEEECCCCCCchhHHHHhhhhhccce----eeeecchhhh------h-hc-------c------ccchhhhhHH
Q 002754 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF----FSISASQFVE------I-YV-------G------VGASRVRSLY 503 (884)
Q Consensus 448 ~~i~~giLL~GPpGtGKTtLakaLA~el~~~~----~~is~s~~~~------~-~~-------g------~~~~~l~~lf 503 (884)
-++|.++||+||.|+||+++|.++|..+-..- ....+..++. . ++ | -....++.+.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 35677899999999999999999998652210 0011000000 0 01 0 0112334444
Q ss_pred HHHHhc----CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcc
Q 002754 504 QEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRF 579 (884)
Q Consensus 504 ~~a~~~----~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRf 579 (884)
+.+... ...|++||++|.+... ..|.||..|+ ....+++||.+|+.++.+.|.+++ |.
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrS--RC 164 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--RC 164 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHh--hh
Confidence 444322 2359999999998655 7899999999 456788888889999999999999 55
Q ss_pred cccccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhhCCCCCHHHH
Q 002754 580 DRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAEL 627 (884)
Q Consensus 580 d~~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~t~G~s~adL 627 (884)
. .|.|++|+.++....+... +.. ..+...++..+.|..+..+
T Consensus 165 q-~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 165 Q-RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred e-EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHH
Confidence 4 8899999998877777542 222 2223355666666555433
No 208
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.44 E-value=1.3e-06 Score=106.36 Aligned_cols=208 Identities=20% Similarity=0.224 Sum_probs=117.0
Q ss_pred cccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhh--
Q 002754 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVE-- 489 (884)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~-- 489 (884)
..|++..|.......+.+.+..+.. ....|+|+|++||||+++|++|.... +.+|+.++|+.+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 4577777766666555554443321 12348999999999999999998754 46999999987532
Q ss_pred ---hhccccc----hhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc----C-----
Q 002754 490 ---IYVGVGA----SRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----G----- 553 (884)
Q Consensus 490 ---~~~g~~~----~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~----~----- 553 (884)
..+|... ......|+. ...+.||||||+.+... ....|+..++.-. +
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE--------------LQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceE
Confidence 2333221 001112332 23568999999998655 5566666665321 1
Q ss_pred CCceEEEeccCCCC-------CCCccCCCCCcccccccCCCCChhhHH----HHHHHHHccC----CCCCccc---HHHH
Q 002754 554 RGNVITIASTNRPD-------ILDPALVRPGRFDRKIFIPKPGLIGRM----EILKVHARKK----PMADDVD---YLAV 615 (884)
Q Consensus 554 ~~~VlVIatTN~~~-------~LdpaLlr~gRfd~~I~~~~P~~eeR~----~Il~~~l~~~----~~~~did---l~~l 615 (884)
..++-||+|||..- .+.+.|.. |+. .+.+..|...+|. .++..++... .....++ +..|
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 531 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 12577888887531 12222222 222 3455566666664 2444444321 1111233 3334
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 616 ASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 616 A~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
..+.=.-+.++|.++++.|+.. .....|+.+|+...+
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~---~~~~~i~~~~lp~~~ 568 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALS---SDNGRIRLSDLPEHL 568 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHh---CCCCeecHHHCchhh
Confidence 4433233456677777766643 234478888886554
No 209
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.44 E-value=1.3e-06 Score=97.69 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=46.4
Q ss_pred cc-cccCchhHHHHHHHHHHhhcccccccccccccC-CcEEEECCCCCCchhHHHHhhhhhcc-------ceeeeec---
Q 002754 417 FS-DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIP-GGILLCGPPGVGKTLLAKAVAGEAGV-------NFFSISA--- 484 (884)
Q Consensus 417 f~-~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~-~giLL~GPpGtGKTtLakaLA~el~~-------~~~~is~--- 484 (884)
|+ ++.|+.+.+..+-+.+.... .|...+ ..++|+||||+|||||+++|++.++. +++.+.+
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a-------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA-------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH-------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 55 68888888655444333221 122222 34899999999999999999999866 8888887
Q ss_pred -chhhhh
Q 002754 485 -SQFVEI 490 (884)
Q Consensus 485 -s~~~~~ 490 (884)
+.+.+.
T Consensus 122 ~sp~~e~ 128 (361)
T smart00763 122 ESPMHED 128 (361)
T ss_pred CCCCccC
Confidence 555444
No 210
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.41 E-value=1.3e-06 Score=100.58 Aligned_cols=213 Identities=24% Similarity=0.267 Sum_probs=128.8
Q ss_pred CcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhh
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFV 488 (884)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~ 488 (884)
.....|+++.|-......+.+.++.+.. -+..|||.|.+||||..+|++|-... +.||+.++|+.+-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~----------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAK----------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcC----------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 3456788888887777777766665432 23458999999999999999998754 6799999998765
Q ss_pred hh-----hccccchhh--------hhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc----
Q 002754 489 EI-----YVGVGASRV--------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---- 551 (884)
Q Consensus 489 ~~-----~~g~~~~~l--------~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~---- 551 (884)
+. .+|+..+.+ .-+|+.|. .+-+|+|||..+... ....||..+..-
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gGTLFLDEIgempl~--------------LQaKLLRVLQEkei~r 371 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELAN---GGTLFLDEIGEMPLP--------------LQAKLLRVLQEKEIER 371 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeecc---CCeEEehhhccCCHH--------------HHHHHHHHHhhceEEe
Confidence 43 344433321 22444432 347999999776433 667777776641
Q ss_pred -----cCCCceEEEeccCCC--CC-----CCccCCCCCcccccccCCCCChhhHHH----HHHHHHc----cCCCC-Ccc
Q 002754 552 -----EGRGNVITIASTNRP--DI-----LDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHAR----KKPMA-DDV 610 (884)
Q Consensus 552 -----~~~~~VlVIatTN~~--~~-----LdpaLlr~gRfd~~I~~~~P~~eeR~~----Il~~~l~----~~~~~-~di 610 (884)
....+|-||+|||.. ++ +-..|.- |++ ++.+..|...+|.+ +...++. +.+.. ..+
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~l 448 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGL 448 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccC
Confidence 113468999999873 11 1222222 333 66677777777754 2223332 22111 122
Q ss_pred cHHH---HHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH-HHHH
Q 002754 611 DYLA---VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL-QAAQ 656 (884)
Q Consensus 611 dl~~---lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~-~Al~ 656 (884)
.-+. |.+..---+-++|++++..+... ......|+.+|+. .++.
T Consensus 449 s~~a~~~L~~y~WPGNVRELeNviER~v~~--~~~~~~I~~~~lp~~~l~ 496 (560)
T COG3829 449 SPDALALLLRYDWPGNVRELENVIERAVNL--VESDGLIDADDLPAFALE 496 (560)
T ss_pred CHHHHHHHHhCCCCchHHHHHHHHHHHHhc--cCCcceeehhhcchhhhc
Confidence 2223 33332222457788888888753 3344458888887 4443
No 211
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.40 E-value=1.1e-06 Score=99.57 Aligned_cols=196 Identities=23% Similarity=0.252 Sum_probs=111.7
Q ss_pred ccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhh----hccceeeeecchhhh
Q 002754 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGE----AGVNFFSISASQFVE 489 (884)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~e----l~~~~~~is~s~~~~ 489 (884)
...+.+..|-......+.+-++.+.. . ...||+.|++||||+.+|+.|... .+.||+.++|+.+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap------~----~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAP------S----GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCC------C----CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 34455566666555555555544321 1 123899999999999999999642 367999999998765
Q ss_pred h-----hccccch-------hhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc------
Q 002754 490 I-----YVGVGAS-------RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF------ 551 (884)
Q Consensus 490 ~-----~~g~~~~-------~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~------ 551 (884)
. .+|...+ .-..+|+.+ ..+.+|+|||..+-.. ....|+..|+..
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP~~--------------~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLPPE--------------GQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhCCHh--------------HHHHHHHHHHcCceEecC
Confidence 4 2222211 112345444 3458999999988654 556666666651
Q ss_pred ---cCCCceEEEeccCC--CCCCCc--cCCCCCcccccccCCCCChhhHH----HHHHHHH----ccCCCCCccc----H
Q 002754 552 ---EGRGNVITIASTNR--PDILDP--ALVRPGRFDRKIFIPKPGLIGRM----EILKVHA----RKKPMADDVD----Y 612 (884)
Q Consensus 552 ---~~~~~VlVIatTN~--~~~Ldp--aLlr~gRfd~~I~~~~P~~eeR~----~Il~~~l----~~~~~~~did----l 612 (884)
....+|.+|++||. .+.+-. .|.+. |+...|.+| ...+|. .++..++ ++.......+ +
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LP--pLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~ 283 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLP--PLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEAL 283 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCC--ChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 12356899988864 223333 44441 444455554 444443 2333333 3333322222 2
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 002754 613 LAVASMTDGMVGAELANIVEVAAINMM 639 (884)
Q Consensus 613 ~~lA~~t~G~s~adL~~Lv~~A~~~A~ 639 (884)
..+-...---+-++|.+++..++..+.
T Consensus 284 ~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 284 RALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 223233222356788888988886653
No 212
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.40 E-value=3e-06 Score=99.61 Aligned_cols=191 Identities=18% Similarity=0.194 Sum_probs=116.2
Q ss_pred EEEECCCCCCchhHHHHhhhhh----------ccceeeeecchhhhh---h-------ccccch------hhhhHHHHH-
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEI---Y-------VGVGAS------RVRSLYQEA- 506 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el----------~~~~~~is~s~~~~~---~-------~g~~~~------~l~~lf~~a- 506 (884)
+.+.|-||||||.++..+..++ ..++++|++-.+... | .|.... .+..-|...
T Consensus 425 mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k 504 (767)
T KOG1514|consen 425 MYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPK 504 (767)
T ss_pred EEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCC
Confidence 8899999999999998887755 345667766554432 2 111111 011111100
Q ss_pred HhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC----CccCCCCCccc-c
Q 002754 507 KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL----DPALVRPGRFD-R 581 (884)
Q Consensus 507 ~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L----dpaLlr~gRfd-~ 581 (884)
-...++|++|||+|.+..... .++..++.... ..+..++||+..|..+.. ....-+ |++ .
T Consensus 505 ~~~~~~VvLiDElD~Lvtr~Q-----------dVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~t 569 (767)
T KOG1514|consen 505 PKRSTTVVLIDELDILVTRSQ-----------DVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGLT 569 (767)
T ss_pred CCCCCEEEEeccHHHHhcccH-----------HHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccce
Confidence 134578999999999976521 14444443333 446778888888887642 222222 443 4
Q ss_pred cccCCCCChhhHHHHHHHHHccCCCCCcccHHHHHhh---CCCCCHHHHHHHHHHHHHHHHHhCC-------CccCHHHH
Q 002754 582 KIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASM---TDGMVGAELANIVEVAAINMMRDGR-------TEITTDDL 651 (884)
Q Consensus 582 ~I~~~~P~~eeR~~Il~~~l~~~~~~~didl~~lA~~---t~G~s~adL~~Lv~~A~~~A~~~~~-------~~It~edi 651 (884)
.|.|.+++..+..+|+...+.....-.+.-...+|.. ..|-..+.+ .+|+.|...|..+.. ..|+.-|+
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRral-dic~RA~Eia~~~~~~~k~~~~q~v~~~~v 648 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRAL-DICRRAAEIAEERNVKGKLAVSQLVGILHV 648 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHH-HHHHHHHHHhhhhcccccccccceeehHHH
Confidence 7899999999999999999876622222112222222 223333333 778888887776544 56778888
Q ss_pred HHHHHHHHc
Q 002754 652 LQAAQIEER 660 (884)
Q Consensus 652 ~~Al~~~~~ 660 (884)
.+|+..+..
T Consensus 649 ~~Ai~em~~ 657 (767)
T KOG1514|consen 649 MEAINEMLA 657 (767)
T ss_pred HHHHHHHhh
Confidence 888765543
No 213
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.40 E-value=2.5e-06 Score=101.30 Aligned_cols=205 Identities=18% Similarity=0.237 Sum_probs=112.8
Q ss_pred ccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh
Q 002754 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI 490 (884)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~ 490 (884)
...|++..|.......+.+.+..+.. ....|+|+|++||||+++|++|.... ..+|+.++|+.+...
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 45677777766655555444433321 12348999999999999999986543 468999999875432
Q ss_pred -----hccccchh-------hhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc--c----
Q 002754 491 -----YVGVGASR-------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--E---- 552 (884)
Q Consensus 491 -----~~g~~~~~-------l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~--~---- 552 (884)
.+|...+. -..+|+.+ ..+.+|||||+.+... ....|+..+... .
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR--------------MQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH--------------HHHHHHHHHhcCCcccCCC
Confidence 23322211 11234433 3458999999998654 455666555431 1
Q ss_pred ---CCCceEEEeccCCC--C-----CCCccCCCCCcccccccCCCCChhhHHH----HHHHHHc----cCCC-CCcccHH
Q 002754 553 ---GRGNVITIASTNRP--D-----ILDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHAR----KKPM-ADDVDYL 613 (884)
Q Consensus 553 ---~~~~VlVIatTN~~--~-----~LdpaLlr~gRfd~~I~~~~P~~eeR~~----Il~~~l~----~~~~-~~didl~ 613 (884)
...++-||++|+.. + .+.+.|.. |+. .+.+..|...+|.+ ++..++. ..+. ...+..+
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 12357788877653 1 13333443 443 34555566666552 3333332 2222 1234444
Q ss_pred HHHhhCCCCCH---HHHHHHHHHHHHHHHHhCCCccCHHHH
Q 002754 614 AVASMTDGMVG---AELANIVEVAAINMMRDGRTEITTDDL 651 (884)
Q Consensus 614 ~lA~~t~G~s~---adL~~Lv~~A~~~A~~~~~~~It~edi 651 (884)
.+......-.+ ++|.+++..|+. ......|+.+|+
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~---~~~~~~i~~~~~ 447 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALT---QLEGYELRPQDI 447 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHH---hCCCCcccHHHc
Confidence 44444433334 455555555543 334456888876
No 214
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.40 E-value=1.4e-06 Score=103.04 Aligned_cols=211 Identities=20% Similarity=0.229 Sum_probs=118.9
Q ss_pred cccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh-
Q 002754 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI- 490 (884)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~- 490 (884)
..|++..|....+..+.+.+..+... +..|+|+|++||||+++|++|.... +.||+.++|+.+.+.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARS----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 55777778777777777766655322 2348999999999999999998643 579999999876432
Q ss_pred ----hccccchh--------hhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc------
Q 002754 491 ----YVGVGASR--------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE------ 552 (884)
Q Consensus 491 ----~~g~~~~~--------l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~------ 552 (884)
.+|...+. -..+|+.+ ..+.+|||||+.+... ....|+..++...
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~--------------~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPLP--------------LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCHH--------------HHHHHHHHHhcCcEEecCC
Confidence 23322211 11234433 3458999999998655 5566666665311
Q ss_pred ---CCCceEEEeccCCCC--CCCccCCCCC---cccccccCCCCChhhHHH----HHHHHHccCCC--CCcccHHH----
Q 002754 553 ---GRGNVITIASTNRPD--ILDPALVRPG---RFDRKIFIPKPGLIGRME----ILKVHARKKPM--ADDVDYLA---- 614 (884)
Q Consensus 553 ---~~~~VlVIatTN~~~--~LdpaLlr~g---Rfd~~I~~~~P~~eeR~~----Il~~~l~~~~~--~~didl~~---- 614 (884)
...++-+|++||..- .+....+++. |+. .+.+..|...+|.+ ++..++..... ...++-..
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 113467888886531 2222111110 332 34555666666543 44455443210 01122222
Q ss_pred ------HHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 002754 615 ------VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQ 653 (884)
Q Consensus 615 ------lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~ 653 (884)
|....---+-++|.++++.++..+.......|+.+++..
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 333332234567777777776543222234688888653
No 215
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.40 E-value=5.1e-07 Score=108.15 Aligned_cols=59 Identities=25% Similarity=0.400 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 427 RLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 427 ~~~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
.+.++++...|.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..+
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~ 384 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG 384 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 455566666565556788899999888 88999999999999999999887777777653
No 216
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.39 E-value=6e-07 Score=107.51 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 427 RLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 427 ~~~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+.++++...|.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~ 381 (552)
T TIGR03719 322 VIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI 381 (552)
T ss_pred EEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE
Confidence 455566666665556788899999888 8899999999999999999988777777655
No 217
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=7.6e-07 Score=98.82 Aligned_cols=133 Identities=24% Similarity=0.350 Sum_probs=90.6
Q ss_pred cccCCcEEEECCCCCCchhHHHHhhhhhcccee-eeecch-----hh------hh-hc-----cc--cchhhhhHHHHHH
Q 002754 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-SISASQ-----FV------EI-YV-----GV--GASRVRSLYQEAK 507 (884)
Q Consensus 448 ~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~-~is~s~-----~~------~~-~~-----g~--~~~~l~~lf~~a~ 507 (884)
-++|.+++|+||.|+||+++|+.+|..+-..-. ...|+. .+ +. ++ |. ....++.+.+.+.
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQ 101 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHh
Confidence 356778999999999999999999986522100 001110 00 00 01 00 1122344433332
Q ss_pred h----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccc
Q 002754 508 D----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKI 583 (884)
Q Consensus 508 ~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I 583 (884)
. ....|++||++|.+... ..|.||..++ .+..++++|..|+.++.+.|.+++ |.. .+
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq-~~ 162 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMNES--------------ASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RCQ-QW 162 (319)
T ss_pred hCcccCCceEEEecchhhhCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cce-eE
Confidence 2 23469999999998655 7899999999 567789999999999999999999 544 88
Q ss_pred cCCCCChhhHHHHHHH
Q 002754 584 FIPKPGLIGRMEILKV 599 (884)
Q Consensus 584 ~~~~P~~eeR~~Il~~ 599 (884)
.|++|+.++..+.+..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 163 VVTPPSTAQAMQWLKG 178 (319)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999888777754
No 218
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=6.6e-07 Score=99.88 Aligned_cols=131 Identities=23% Similarity=0.348 Sum_probs=87.8
Q ss_pred ccCCcEEEECCCCCCchhHHHHhhhhhcc-------------------------ceeeeecchhhhhhcc-----ccchh
Q 002754 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGV-------------------------NFFSISASQFVEIYVG-----VGASR 498 (884)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~-------------------------~~~~is~s~~~~~~~g-----~~~~~ 498 (884)
++|.+++|+||+|+|||++|+.+|+.+.. +++.++...-. ..-| -....
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 67788999999999999999999987532 12222211000 0000 01233
Q ss_pred hhhHHHHHHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCC
Q 002754 499 VRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALV 574 (884)
Q Consensus 499 l~~lf~~a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLl 574 (884)
++.+.+.+.. ....|+++|+++.+... ..+.|+..++... .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 4555555543 23458889999887554 6677887777543 45667778888889999998
Q ss_pred CCCcccccccCCCCChhhHHHHHHH
Q 002754 575 RPGRFDRKIFIPKPGLIGRMEILKV 599 (884)
Q Consensus 575 r~gRfd~~I~~~~P~~eeR~~Il~~ 599 (884)
+ |. ..+.|++|+.++....+..
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 8 44 3889999999887777754
No 219
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.32 E-value=2.8e-07 Score=97.28 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=42.5
Q ss_pred HHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 433 lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+...|.....+.++++.++.| +.|+||+|||||||++.|||-..+..+.+..
T Consensus 9 v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~ 62 (248)
T COG1116 9 VSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62 (248)
T ss_pred eEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 334455566788899999998 8999999999999999999988777766544
No 220
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.32 E-value=4.4e-06 Score=99.08 Aligned_cols=192 Identities=19% Similarity=0.207 Sum_probs=109.0
Q ss_pred ccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh----
Q 002754 418 SDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI---- 490 (884)
Q Consensus 418 ~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~---- 490 (884)
..+.|....+..+.+.+..+.. .+..|+|+|++||||+++|++|.... +.+|+.++|+.+-+.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~ 256 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAES 256 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHH
Confidence 3445555666555555554332 13348999999999999999998754 579999999876432
Q ss_pred -hccccchhh-------hhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc---------C
Q 002754 491 -YVGVGASRV-------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------G 553 (884)
Q Consensus 491 -~~g~~~~~l-------~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~---------~ 553 (884)
.+|...+.+ ...|+. ...+.+|||||+.+... ....|+..++... .
T Consensus 257 ~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 257 ELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELPLA--------------LQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCCHH--------------HHHHHHHHHhcCCEeeCCCCcce
Confidence 233221111 112333 23568999999998655 5566666665311 1
Q ss_pred CCceEEEeccCCCC-------CCCccCCCCCcccccccCCCCChhhHHH----HHHHHHccC----C-CCCccc---HHH
Q 002754 554 RGNVITIASTNRPD-------ILDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARKK----P-MADDVD---YLA 614 (884)
Q Consensus 554 ~~~VlVIatTN~~~-------~LdpaLlr~gRfd~~I~~~~P~~eeR~~----Il~~~l~~~----~-~~~did---l~~ 614 (884)
..++-||++||..- .+.+.|.. |+. .+.|..|...+|.+ ++..++... + -...++ +..
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~ 396 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAA 396 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 23678888887631 12233332 333 34455666666643 333443321 1 111233 333
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHH
Q 002754 615 VASMTDGMVGAELANIVEVAAINMM 639 (884)
Q Consensus 615 lA~~t~G~s~adL~~Lv~~A~~~A~ 639 (884)
|....=--+.++|+++++.|+..+.
T Consensus 397 L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 397 LLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 4444333456778888888876553
No 221
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.32 E-value=8.8e-07 Score=89.17 Aligned_cols=117 Identities=29% Similarity=0.385 Sum_probs=74.5
Q ss_pred ccCCcEEEECCCCCCchhHHHHhhhhhccc-----------------------eeeeecchhhhhhccccchhhhhHHHH
Q 002754 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-----------------------FFSISASQFVEIYVGVGASRVRSLYQE 505 (884)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~-----------------------~~~is~s~~~~~~~g~~~~~l~~lf~~ 505 (884)
++|..++|+||+|+||+++|..+|..+-.. +..++...... .-....++.+.+.
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~~~ 93 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---SIKIDQIREIIEF 93 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---SBSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---hhhHHHHHHHHHH
Confidence 567779999999999999999999865221 11111111000 0011233444444
Q ss_pred HHh----cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccc
Q 002754 506 AKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDR 581 (884)
Q Consensus 506 a~~----~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~ 581 (884)
+.. ...-|++||++|.+... ..+.||..|+ ....++++|.+|+.++.+.|.+++ |.-
T Consensus 94 ~~~~~~~~~~KviiI~~ad~l~~~--------------a~NaLLK~LE--epp~~~~fiL~t~~~~~il~TI~S--Rc~- 154 (162)
T PF13177_consen 94 LSLSPSEGKYKVIIIDEADKLTEE--------------AQNALLKTLE--EPPENTYFILITNNPSKILPTIRS--RCQ- 154 (162)
T ss_dssp CTSS-TTSSSEEEEEETGGGS-HH--------------HHHHHHHHHH--STTTTEEEEEEES-GGGS-HHHHT--TSE-
T ss_pred HHHHHhcCCceEEEeehHhhhhHH--------------HHHHHHHHhc--CCCCCEEEEEEECChHHChHHHHh--hce-
Confidence 332 23569999999998765 8899999999 556789999999999999999999 543
Q ss_pred cccCCC
Q 002754 582 KIFIPK 587 (884)
Q Consensus 582 ~I~~~~ 587 (884)
.|.|++
T Consensus 155 ~i~~~~ 160 (162)
T PF13177_consen 155 VIRFRP 160 (162)
T ss_dssp EEEE--
T ss_pred EEecCC
Confidence 555554
No 222
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.30 E-value=2.7e-05 Score=88.90 Aligned_cols=198 Identities=21% Similarity=0.245 Sum_probs=117.9
Q ss_pred ccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh
Q 002754 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI 490 (884)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~ 490 (884)
...+..+.|.......+.+.+..+... ...|||.|.+||||..+||+|-... +.||+.++|+.+-+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~S----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKS----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcC----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 344556777777777777766655432 2238999999999999999997654 679999999987544
Q ss_pred -----hccccchhhhhHHHHHH----hcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc-----cC---
Q 002754 491 -----YVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----EG--- 553 (884)
Q Consensus 491 -----~~g~~~~~l~~lf~~a~----~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~-----~~--- 553 (884)
.+|+..+.+...+..-+ -...+-+|+|||..+... ....||..+..- -+
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHH--------------HHHHHHHHHhhcceeecCCCce
Confidence 44444332211111100 122457999999776443 566777666531 11
Q ss_pred -CCceEEEeccCCCCCCCccCCCCCcccc-------cccCCCCChhhHHH----HHHHHHc----cCCC-CCccc---HH
Q 002754 554 -RGNVITIASTNRPDILDPALVRPGRFDR-------KIFIPKPGLIGRME----ILKVHAR----KKPM-ADDVD---YL 613 (884)
Q Consensus 554 -~~~VlVIatTN~~~~LdpaLlr~gRfd~-------~I~~~~P~~eeR~~----Il~~~l~----~~~~-~~did---l~ 613 (884)
.-+|-||++||.- |-.++ +.|+|-. ++.+..|...+|.. +..+++. ..+. ...++ ++
T Consensus 355 ikVDVRiIAATNRD--L~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~ 431 (550)
T COG3604 355 IKVDVRVIAATNRD--LEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALE 431 (550)
T ss_pred eEEEEEEEeccchh--HHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHH
Confidence 2358999999972 22222 2233321 55566677777643 2223332 2222 11222 33
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHH
Q 002754 614 AVASMTDGMVGAELANIVEVAAINM 638 (884)
Q Consensus 614 ~lA~~t~G~s~adL~~Lv~~A~~~A 638 (884)
.+..+.---+-++|++++++|+..|
T Consensus 432 ~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 432 LLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 3444433335689999999999877
No 223
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.6e-06 Score=98.67 Aligned_cols=209 Identities=25% Similarity=0.284 Sum_probs=121.5
Q ss_pred cccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccce----eeeecchhhhh
Q 002754 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF----FSISASQFVEI 490 (884)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~----~~is~s~~~~~ 490 (884)
..|.|+.|....+..+.-.... ..+++++||||||||+|++-+.+-+.+-. ++++. +..
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~---I~s 238 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSA---IHS 238 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHH---Hhh
Confidence 3677888887776555433321 23489999999999999999988764311 11110 000
Q ss_pred hccccchh-----------------hhhHH--------HHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHH
Q 002754 491 YVGVGASR-----------------VRSLY--------QEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLL 545 (884)
Q Consensus 491 ~~g~~~~~-----------------l~~lf--------~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL 545 (884)
+.|..... ...+. -.....+.+|+|+||+-.+-. .+++.|.
T Consensus 239 ~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~--------------~iLe~LR 304 (490)
T COG0606 239 LAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKR--------------SILEALR 304 (490)
T ss_pred hcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhH--------------HHHHHHh
Confidence 11110000 00000 001112235999999865533 4888888
Q ss_pred Hhhcccc-----------CCCceEEEeccCCCC-----------------------CCCccCCCCCcccccccCCCCChh
Q 002754 546 VCLDGFE-----------GRGNVITIASTNRPD-----------------------ILDPALVRPGRFDRKIFIPKPGLI 591 (884)
Q Consensus 546 ~~ld~~~-----------~~~~VlVIatTN~~~-----------------------~LdpaLlr~gRfd~~I~~~~P~~e 591 (884)
+=|++-. -..++.+|+++|.-- .+...|++ |||..+.++.++..
T Consensus 305 ~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~ 382 (490)
T COG0606 305 EPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAG 382 (490)
T ss_pred CccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHH
Confidence 7776411 124577788888531 23346666 99999988876633
Q ss_pred hH--------------HHHHHH------HHccCCCC----------------CcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 002754 592 GR--------------MEILKV------HARKKPMA----------------DDVDYLAVASMTDGMVGAELANIVEVAA 635 (884)
Q Consensus 592 eR--------------~~Il~~------~l~~~~~~----------------~didl~~lA~~t~G~s~adL~~Lv~~A~ 635 (884)
++ ..+.+. +..+...+ .+.++...+-..-++|.+....+++.|.
T Consensus 383 e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvar 462 (490)
T COG0606 383 ELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVAR 462 (490)
T ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 33 122221 11111011 1223333444556778888888888888
Q ss_pred HHHHHhCCCccCHHHHHHHHH
Q 002754 636 INMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 636 ~~A~~~~~~~It~edi~~Al~ 656 (884)
.+|-.++...|...|+.+|+.
T Consensus 463 TiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 463 TIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hhhcccCcchhhHHHHHHHHh
Confidence 888888888899999988875
No 224
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=1.3e-05 Score=90.63 Aligned_cols=183 Identities=19% Similarity=0.209 Sum_probs=112.4
Q ss_pred ccccCCcEEEECCCCCCchhHHHHhhhhh-----ccceeeeecchhhhh----------h----ccccch-hhhhHHH-H
Q 002754 447 GVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEI----------Y----VGVGAS-RVRSLYQ-E 505 (884)
Q Consensus 447 g~~i~~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s~~~~~----------~----~g~~~~-~l~~lf~-~ 505 (884)
...-++++.+.|.||+|||.++.-+...+ .+..++++|.++... + .+.+.+ .....|+ .
T Consensus 171 e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h 250 (529)
T KOG2227|consen 171 ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKH 250 (529)
T ss_pred hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 34456679999999999999888665433 224467777653321 1 111111 1112232 2
Q ss_pred HHhc-CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCC----CCccc
Q 002754 506 AKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVR----PGRFD 580 (884)
Q Consensus 506 a~~~-~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr----~gRfd 580 (884)
.... .+-++++||+|.++.... .++..+.. +.. ..+..+++|+-.|..|.-|..|-+ .+.-.
T Consensus 251 ~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~lFe-wp~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P 317 (529)
T KOG2227|consen 251 TKQSKFMLLLVLDEMDHLITRSQ-----------TVLYTLFE-WPK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKP 317 (529)
T ss_pred HhcccceEEEEechhhHHhhccc-----------ceeeeehh-ccc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCC
Confidence 2222 366899999999985422 13333332 221 235678889999998865543321 22345
Q ss_pred ccccCCCCChhhHHHHHHHHHccCCCCCccc--HHHHHhhCCCCCHHHHH---HHHHHHHHHHHHhCC
Q 002754 581 RKIFIPKPGLIGRMEILKVHARKKPMADDVD--YLAVASMTDGMVGAELA---NIVEVAAINMMRDGR 643 (884)
Q Consensus 581 ~~I~~~~P~~eeR~~Il~~~l~~~~~~~did--l~~lA~~t~G~s~adL~---~Lv~~A~~~A~~~~~ 643 (884)
..+.|++|+.++..+|++..+.........+ +..+|+...|.|| |++ .+|+.|..++....+
T Consensus 318 ~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e~r 384 (529)
T KOG2227|consen 318 KLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIAEIEKR 384 (529)
T ss_pred ceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHh
Confidence 6889999999999999999998775544333 5667777777776 344 456666666655443
No 225
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.25 E-value=1.1e-06 Score=94.07 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=43.5
Q ss_pred HHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 432 ~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
++...|+....+.++++.++.| ++|.||||||||||+|+|++.+.+..+.|..
T Consensus 7 ~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l 61 (258)
T COG1120 7 NLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61 (258)
T ss_pred EEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence 3344566677889999999988 8899999999999999999988776665543
No 226
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.20 E-value=2.5e-06 Score=94.70 Aligned_cols=77 Identities=29% Similarity=0.342 Sum_probs=43.6
Q ss_pred CcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCC------------CCCCCccCCCCCc
Q 002754 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR------------PDILDPALVRPGR 578 (884)
Q Consensus 511 p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~------------~~~LdpaLlr~gR 578 (884)
|+|+||||++-+.-. .+..|-..|+. ..+. +||.+||+ |..+|..|+. |
T Consensus 279 pGVLFIDEvHmLDiE--------------cFsfLnralEs--~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIE--------------CFSFLNRALES--ELSP-IIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGSBHH--------------HHHHHHHHHTS--TT---EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhccHH--------------HHHHHHHHhcC--CCCc-EEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 668888888766433 33333334442 2233 56667774 4567778888 6
Q ss_pred ccccccCCCCChhhHHHHHHHHHccCCCC
Q 002754 579 FDRKIFIPKPGLIGRMEILKVHARKKPMA 607 (884)
Q Consensus 579 fd~~I~~~~P~~eeR~~Il~~~l~~~~~~ 607 (884)
+- .|...+|+.++..+|++.++..-.+.
T Consensus 340 ll-II~t~py~~~ei~~Il~iR~~~E~v~ 367 (398)
T PF06068_consen 340 LL-IIRTKPYSEEEIKQILKIRAKEEDVE 367 (398)
T ss_dssp EE-EEEE----HHHHHHHHHHHHHHCT--
T ss_pred cE-EEECCCCCHHHHHHHHHhhhhhhcCc
Confidence 54 77888999999999999999765543
No 227
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.20 E-value=7.1e-07 Score=92.02 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=45.3
Q ss_pred HHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 430 l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
++++.+.|+....++++++.+..| ++|+||+|+|||||+|+|.+--.+..+.|..
T Consensus 5 i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i 61 (240)
T COG1126 5 IKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61 (240)
T ss_pred EEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEE
Confidence 456677788888999999999998 8999999999999999999866555555443
No 228
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.20 E-value=1.3e-05 Score=98.64 Aligned_cols=195 Identities=22% Similarity=0.265 Sum_probs=108.4
Q ss_pred cccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh-
Q 002754 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI- 490 (884)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~- 490 (884)
..|.+..|....+..+.+-+..+.. ....|+|+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 4566677777776666555554432 12348999999999999999998744 569999999865322
Q ss_pred ----hccccchh-------hhhHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc-------
Q 002754 491 ----YVGVGASR-------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE------- 552 (884)
Q Consensus 491 ----~~g~~~~~-------l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~------- 552 (884)
.+|...+. ....|+ ....+++|||||+.+... ....|+..++...
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLE--------------LQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hhhhhcCcccccccccccchhhHHH---hcCCCeEEEechhhCCHH--------------HHHHHHHHHHhCCEEeCCCC
Confidence 22321110 011232 233568999999998654 5566666654311
Q ss_pred --CCCceEEEeccCCCC--CCCccCCCCC---cccccccCCCCChhhHHH----HHHHHHccC----CCC-Cccc---HH
Q 002754 553 --GRGNVITIASTNRPD--ILDPALVRPG---RFDRKIFIPKPGLIGRME----ILKVHARKK----PMA-DDVD---YL 613 (884)
Q Consensus 553 --~~~~VlVIatTN~~~--~LdpaLlr~g---Rfd~~I~~~~P~~eeR~~----Il~~~l~~~----~~~-~did---l~ 613 (884)
...++-+|++|+..- .+....+++. |+. .+.+..|...+|.+ +++.++... +.. ..+. +.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 124678888887531 2222111110 222 34556666666654 344444321 111 1123 33
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHH
Q 002754 614 AVASMTDGMVGAELANIVEVAAIN 637 (884)
Q Consensus 614 ~lA~~t~G~s~adL~~Lv~~A~~~ 637 (884)
.|....=--+-++|+++++.|+..
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHh
Confidence 343333333556777777777643
No 229
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.19 E-value=4.8e-06 Score=84.39 Aligned_cols=97 Identities=28% Similarity=0.399 Sum_probs=64.4
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh-----hccccchh-------hhhHHHHHHhcCCcEEEh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASR-------VRSLYQEAKDNAPSVVFI 516 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~-------l~~lf~~a~~~~p~Il~i 516 (884)
..|+|+|++||||+.+|++|-... +.||+.++|+.+... .+|..... -..+++.+. .+.+||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~---~GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQAN---GGTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTT---TSEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeecc---ceEEee
Confidence 458999999999999999998754 569999999876432 34432211 123555543 458999
Q ss_pred hhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc--c-------CCCceEEEeccCC
Q 002754 517 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--E-------GRGNVITIASTNR 565 (884)
Q Consensus 517 DEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~--~-------~~~~VlVIatTN~ 565 (884)
|||+.+... +...|+..|+.- . ...++-||++|+.
T Consensus 100 d~I~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDLPPE--------------LQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS-HH--------------HHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cchhhhHHH--------------HHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 999998765 666777766631 1 1246899999875
No 230
>PRK08116 hypothetical protein; Validated
Probab=98.19 E-value=1.1e-06 Score=95.54 Aligned_cols=128 Identities=23% Similarity=0.286 Sum_probs=73.0
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhcc----ccchhhhhHHHHHHhcCCcEEEhhhHHHhhh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVG----VGASRVRSLYQEAKDNAPSVVFIDELDAVGR 524 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g----~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~ 524 (884)
.|++|+|++|+|||+|+.+|+..+ +.+++.++.+++...+.. ........+++.+. ..++|+|||+....
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~- 191 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER- 191 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC-
Confidence 469999999999999999999976 677888888776654321 11111123333332 34699999984321
Q ss_pred hcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCC-CC----CCccCCCCCcc---cccccCCCCChhhHHHH
Q 002754 525 ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-DI----LDPALVRPGRF---DRKIFIPKPGLIGRMEI 596 (884)
Q Consensus 525 ~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~-~~----LdpaLlr~gRf---d~~I~~~~P~~eeR~~I 596 (884)
..+. ....|+..++..... +..+|.|||.+ +. ++..+.+ |+ ...|.+..++. |..+
T Consensus 192 --------~t~~---~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~ 255 (268)
T PRK08116 192 --------DTEW---AREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEI 255 (268)
T ss_pred --------CCHH---HHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHH
Confidence 1122 334455555544332 33466677754 22 3455555 43 22345555553 4444
Q ss_pred HH
Q 002754 597 LK 598 (884)
Q Consensus 597 l~ 598 (884)
.+
T Consensus 256 ~~ 257 (268)
T PRK08116 256 AK 257 (268)
T ss_pred HH
Confidence 43
No 231
>PRK06526 transposase; Provisional
Probab=98.18 E-value=4.4e-06 Score=90.17 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=45.7
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccc-cchhhhhHHHHHHhcCCcEEEhhhHHHhh
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAVG 523 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~-~~~~l~~lf~~a~~~~p~Il~iDEId~l~ 523 (884)
+.+++|+||||||||+|+.+|+.++ |..+..+++.+++...... ..+.+...+... ..+++++|||++...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 3569999999999999999998865 5555566666655443211 111222223322 346799999997653
No 232
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.16 E-value=2.1e-06 Score=96.30 Aligned_cols=190 Identities=22% Similarity=0.238 Sum_probs=104.2
Q ss_pred cEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhh----hccccchhhhhHHH--HHHhcCCcEEEhhhHHHhhhhc
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI----YVGVGASRVRSLYQ--EAKDNAPSVVFIDELDAVGRER 526 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~----~~g~~~~~l~~lf~--~a~~~~p~Il~iDEId~l~~~r 526 (884)
++||+|.||+|||.|++.++.-... .+++++...... .+......-...++ .+-....+|++|||+|.+...
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~pr-~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~- 136 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAPR-SVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED- 136 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-SS-EEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH-
T ss_pred ceeeccchhhhHHHHHHHHHhhCCc-eEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccch-
Confidence 4999999999999999988765433 334433221111 11000000000111 112234569999999998543
Q ss_pred CCCCCCCchhHHHHHHHHHHhhccc----cC-------CCceEEEeccCCCC-------------CCCccCCCCCccccc
Q 002754 527 GLIKGSGGQERDATLNQLLVCLDGF----EG-------RGNVITIASTNRPD-------------ILDPALVRPGRFDRK 582 (884)
Q Consensus 527 ~~~~~Sgge~~~~~l~~LL~~ld~~----~~-------~~~VlVIatTN~~~-------------~LdpaLlr~gRfd~~ 582 (884)
....|+..|+.- .. +...-|++++|... .+++.|++ |||.+
T Consensus 137 -------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLi 201 (331)
T PF00493_consen 137 -------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLI 201 (331)
T ss_dssp -------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEE
T ss_pred -------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEE
Confidence 455666666641 11 24567889988764 47889999 99987
Q ss_pred ccC-CCCChhhHHHHHHHHHccCC----------------CCCccc--HHHHHh--------------------------
Q 002754 583 IFI-PKPGLIGRMEILKVHARKKP----------------MADDVD--YLAVAS-------------------------- 617 (884)
Q Consensus 583 I~~-~~P~~eeR~~Il~~~l~~~~----------------~~~did--l~~lA~-------------------------- 617 (884)
+.+ ..|+.+.-..|..+.+.... +..+.- +-..++
T Consensus 202 f~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~ 281 (331)
T PF00493_consen 202 FLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKES 281 (331)
T ss_dssp ECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCH
T ss_pred EEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccc
Confidence 665 55665555455554332221 000000 011111
Q ss_pred ----hCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 002754 618 ----MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 659 (884)
Q Consensus 618 ----~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~ 659 (884)
.....|.+.|+.+++-|...|..+-+..|+.+|+..|+..+.
T Consensus 282 ~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 282 KSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFE 327 (331)
T ss_dssp HCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHH
Confidence 112356778889999999999999999999999999998654
No 233
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.16 E-value=8.9e-07 Score=94.46 Aligned_cols=54 Identities=24% Similarity=0.331 Sum_probs=42.8
Q ss_pred HHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 431 ~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+++...|.+...+.++++.++.| +.|+||||+|||||+|+|.|-+.+..+++..
T Consensus 8 ~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~ 63 (254)
T COG1121 8 ENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63 (254)
T ss_pred eeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEE
Confidence 34444555434788899999987 8899999999999999999988777666653
No 234
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.15 E-value=1.2e-05 Score=93.47 Aligned_cols=177 Identities=23% Similarity=0.225 Sum_probs=100.7
Q ss_pred cEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh-----hccccchhh-------hhHHHHHHhcCCcEEEhh
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFID 517 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~l-------~~lf~~a~~~~p~Il~iD 517 (884)
.++|+|++||||+++|+++.... +.+|+.++|+.+... .+|...+.+ ...++ ....+.+|||
T Consensus 164 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ 240 (445)
T TIGR02915 164 TVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLD 240 (445)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEEe
Confidence 48999999999999999997654 468999999875332 222211110 01121 2335689999
Q ss_pred hHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc---------CCCceEEEeccCCC-------CCCCccCCCCCcccc
Q 002754 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGRFDR 581 (884)
Q Consensus 518 EId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~---------~~~~VlVIatTN~~-------~~LdpaLlr~gRfd~ 581 (884)
|++.+... ....|+..++... ...++.+|++|+.. ..+.+.|.. |+.
T Consensus 241 ~i~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~- 303 (445)
T TIGR02915 241 EIGDLPLN--------------LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA- 303 (445)
T ss_pred chhhCCHH--------------HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-
Confidence 99998655 5566666654311 01357888888654 123333333 443
Q ss_pred cccCCCCChhhHHH----HHHHHHccC----CCC-Cccc---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 002754 582 KIFIPKPGLIGRME----ILKVHARKK----PMA-DDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 582 ~I~~~~P~~eeR~~----Il~~~l~~~----~~~-~did---l~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~e 649 (884)
.+.+..|...+|.+ ++..++... ... ..++ +..|....-.-+.++|+++++.|+..+ ....|+.+
T Consensus 304 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~ 380 (445)
T TIGR02915 304 EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAE 380 (445)
T ss_pred cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHH
Confidence 34555666666654 344444321 111 1233 334444443345577777777776432 34568877
Q ss_pred HHH
Q 002754 650 DLL 652 (884)
Q Consensus 650 di~ 652 (884)
++.
T Consensus 381 ~l~ 383 (445)
T TIGR02915 381 DLG 383 (445)
T ss_pred HcC
Confidence 763
No 235
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.14 E-value=5.8e-07 Score=100.32 Aligned_cols=57 Identities=26% Similarity=0.315 Sum_probs=47.1
Q ss_pred HHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecch
Q 002754 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (884)
Q Consensus 430 l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 486 (884)
++++.+.|++.....++++.+..| +.|.||+||||||++|+|||...+..+.|....
T Consensus 8 i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G 66 (352)
T COG3842 8 IRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDG 66 (352)
T ss_pred EEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 344566677777788899999998 779999999999999999998888887776543
No 236
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.14 E-value=6.5e-07 Score=99.38 Aligned_cols=56 Identities=27% Similarity=0.389 Sum_probs=43.6
Q ss_pred HHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecch
Q 002754 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (884)
Q Consensus 431 ~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 486 (884)
+++.+.|++...+.++++.+..| +.|+||+|||||||+|+|||-..+..++|..++
T Consensus 7 ~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g 64 (338)
T COG3839 7 KNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred eeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 34444455433567788888887 889999999999999999999888888776554
No 237
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.12 E-value=1e-06 Score=89.94 Aligned_cols=74 Identities=24% Similarity=0.177 Sum_probs=48.9
Q ss_pred cccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccc-----hhhhhHHHHHHhcCCcEEEhhhHH
Q 002754 448 VRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGA-----SRVRSLYQEAKDNAPSVVFIDELD 520 (884)
Q Consensus 448 ~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~-----~~l~~lf~~a~~~~p~Il~iDEId 520 (884)
+.++.| +.|+||||+|||||+++|+|...+..+.+......-.|..+.. ..-+-.+..+....|.++++||.-
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 455555 8899999999999999999988777777665431111221110 111223444556778999999985
Q ss_pred H
Q 002754 521 A 521 (884)
Q Consensus 521 ~ 521 (884)
.
T Consensus 100 s 100 (177)
T cd03222 100 A 100 (177)
T ss_pred c
Confidence 4
No 238
>PRK08181 transposase; Validated
Probab=98.11 E-value=1.3e-05 Score=87.21 Aligned_cols=69 Identities=25% Similarity=0.354 Sum_probs=47.7
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhcc-ccchhhhhHHHHHHhcCCcEEEhhhHHHh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVG-VGASRVRSLYQEAKDNAPSVVFIDELDAV 522 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g-~~~~~l~~lf~~a~~~~p~Il~iDEId~l 522 (884)
.+++|+||+|||||+|+.+|+.++ +..++.++..+++..+.. .........+.... .+++|+|||+...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccc
Confidence 459999999999999999999755 667777887777664321 11122233444433 4679999999765
No 239
>PRK09183 transposase/IS protein; Provisional
Probab=98.09 E-value=1.1e-05 Score=87.34 Aligned_cols=70 Identities=33% Similarity=0.442 Sum_probs=45.8
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhcc-ccchhhhhHHHHHHhcCCcEEEhhhHHHh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVG-VGASRVRSLYQEAKDNAPSVVFIDELDAV 522 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g-~~~~~l~~lf~~a~~~~p~Il~iDEId~l 522 (884)
.+++|+||||||||+|+.+|+..+ +..+..+++.++...+.. .....+...+... ...+++++|||+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 348999999999999999997754 555666666665533211 1112233445443 245679999999654
No 240
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.07 E-value=3.4e-06 Score=86.70 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=42.3
Q ss_pred HHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 433 lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+...+....++..+++....| +.|+||||+|||||+|+|+|++.+..+.+...
T Consensus 7 ls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~ 61 (259)
T COG4559 7 LSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61 (259)
T ss_pred eEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeC
Confidence 333444556677788888888 78999999999999999999998877776554
No 241
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.07 E-value=2.7e-06 Score=100.45 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=47.5
Q ss_pred HHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecch
Q 002754 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (884)
Q Consensus 431 ~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 486 (884)
.++...|+...++.+.++.+..| +.|+|+||+|||||+|+|+|...+..+.|....
T Consensus 7 ~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~ 64 (530)
T COG0488 7 ENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64 (530)
T ss_pred eeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC
Confidence 34555677788889999998877 999999999999999999999988888877655
No 242
>PF13173 AAA_14: AAA domain
Probab=98.06 E-value=9e-06 Score=78.36 Aligned_cols=67 Identities=28% Similarity=0.381 Sum_probs=44.4
Q ss_pred EEEECCCCCCchhHHHHhhhhhc--cceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHh
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAG--VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 522 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~--~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l 522 (884)
++|.||.||||||+++.++..+. ...+.+++.+......... . +...+.........+++|||+..+
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh
Confidence 78999999999999999998876 6777888776443211100 0 112222221124578999999876
No 243
>PRK12377 putative replication protein; Provisional
Probab=98.06 E-value=3.3e-05 Score=83.02 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=46.1
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccc--cchhhhhHHHHHHhcCCcEEEhhhHHHh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV--GASRVRSLYQEAKDNAPSVVFIDELDAV 522 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~--~~~~l~~lf~~a~~~~p~Il~iDEId~l 522 (884)
.+++|+||||||||+|+.+|+..+ +..++.++..++....... .......+++.+ ...++|+|||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 469999999999999999999977 5667777777766542110 000112233333 34579999999543
No 244
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.05 E-value=9.7e-06 Score=77.53 Aligned_cols=96 Identities=23% Similarity=0.308 Sum_probs=57.6
Q ss_pred cEEEECCCCCCchhHHHHhhhhh--------ccceeeeecchhhhh---------hccc------cchh-hhhHHHHHHh
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEA--------GVNFFSISASQFVEI---------YVGV------GASR-VRSLYQEAKD 508 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el--------~~~~~~is~s~~~~~---------~~g~------~~~~-l~~lf~~a~~ 508 (884)
.++++||+|+|||++++.++... ..+++.+++...... .++. .... ...+.+.+..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 38899999999999999999977 677777776554421 1111 1111 2334444455
Q ss_pred cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEecc
Q 002754 509 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 563 (884)
Q Consensus 509 ~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatT 563 (884)
....+++|||+|.+. . ...++.|...++ ...-.++++++.
T Consensus 86 ~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLF-S------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHH-T------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred cCCeEEEEeChHhcC-C------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 545589999999973 1 226666655555 223345555554
No 245
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=5.5e-06 Score=87.18 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=40.0
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecch
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 486 (884)
...++++++.+..| +.|+|+||+|||||+|.|||...+..+.+.+..
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G 88 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG 88 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc
Confidence 34567888999888 999999999999999999999988877776543
No 246
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.04 E-value=4.4e-06 Score=90.21 Aligned_cols=88 Identities=22% Similarity=0.270 Sum_probs=59.2
Q ss_pred HHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecchh--h-hhhccccchhhhhHHHH
Q 002754 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF--V-EIYVGVGASRVRSLYQE 505 (884)
Q Consensus 431 ~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~--~-~~~~g~~~~~l~~lf~~ 505 (884)
+++.+.+.....+.++++.++.| +.|+||+|+|||||+|+|||-..+..++|....- . .........+++-+|+.
T Consensus 6 ~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~ 85 (345)
T COG1118 6 NNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQH 85 (345)
T ss_pred hhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEec
Confidence 44555566655666788888888 8899999999999999999998888777765432 1 11123334455556666
Q ss_pred HHhcCCcEEEhhhH
Q 002754 506 AKDNAPSVVFIDEL 519 (884)
Q Consensus 506 a~~~~p~Il~iDEI 519 (884)
..- -|...+.|+|
T Consensus 86 YAL-F~HmtVa~NI 98 (345)
T COG1118 86 YAL-FPHMTVADNI 98 (345)
T ss_pred hhh-cccchHHhhh
Confidence 552 2334556665
No 247
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.03 E-value=4.4e-05 Score=81.88 Aligned_cols=69 Identities=22% Similarity=0.420 Sum_probs=48.8
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccc---cchhhhhHHHHHHhcCCcEEEhhhHHHh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV---GASRVRSLYQEAKDNAPSVVFIDELDAV 522 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~---~~~~l~~lf~~a~~~~p~Il~iDEId~l 522 (884)
.+++|+|++|||||+|+.+|+..+ +..+..++.+++.....+. .......+++.+. .+++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 469999999999999999999987 6677788887776542211 1112234455443 4679999999654
No 248
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.03 E-value=5.6e-05 Score=81.06 Aligned_cols=92 Identities=10% Similarity=0.086 Sum_probs=66.8
Q ss_pred CCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCc-ccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 002754 566 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRT 644 (884)
Q Consensus 566 ~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~d-idl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~ 644 (884)
|..+|-.|+. |+- +|.-.+++.++...||+..+.+-.+..+ ..+..|......-+-+--.+|+..|...+.++...
T Consensus 339 phGiP~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 4567777777 653 6777889999999999998866544322 22444555544455555668888888888888888
Q ss_pred ccCHHHHHHHHHHHHc
Q 002754 645 EITTDDLLQAAQIEER 660 (884)
Q Consensus 645 ~It~edi~~Al~~~~~ 660 (884)
.+..+|+..+......
T Consensus 416 ~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFLD 431 (454)
T ss_pred eeehhHHHHHHHHHhh
Confidence 9999999999876643
No 249
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.02 E-value=1.8e-05 Score=95.01 Aligned_cols=223 Identities=22% Similarity=0.256 Sum_probs=120.9
Q ss_pred cccccCchhHHHHHHHHHHhhcccccccccccccCC--cEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccc
Q 002754 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG--GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGV 494 (884)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~--giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~ 494 (884)
.+.+.|...++..+- ...|+.......-|..+.+ ++||+|-||+|||.|+|.+++.+...++. ++..- ..+|-
T Consensus 285 aPsIyG~e~VKkAil--LqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgkgs--s~~GL 359 (682)
T COG1241 285 APSIYGHEDVKKAIL--LQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGKGS--SAAGL 359 (682)
T ss_pred cccccCcHHHHHHHH--HHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEE-ccccc--cccCc
Confidence 445667777664442 2223333222222233332 49999999999999999999876544332 21110 01111
Q ss_pred cchhhhhHH--H---H---HHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc---cC--------CC
Q 002754 495 GASRVRSLY--Q---E---AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---EG--------RG 555 (884)
Q Consensus 495 ~~~~l~~lf--~---~---a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~---~~--------~~ 555 (884)
+...++.-+ + . +--..++|.+|||+|++... ..+.+...|+.. .. +.
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~aihEaMEQQtIsIaKAGI~atLnA 425 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE--------------DRVAIHEAMEQQTISIAKAGITATLNA 425 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH--------------HHHHHHHHHHhcEeeecccceeeecch
Confidence 111111111 0 0 01134579999999987433 233444444421 01 22
Q ss_pred ceEEEeccCCCC-------------CCCccCCCCCcccccccCC-CCChhhHHH----HHHHHHccC-------------
Q 002754 556 NVITIASTNRPD-------------ILDPALVRPGRFDRKIFIP-KPGLIGRME----ILKVHARKK------------- 604 (884)
Q Consensus 556 ~VlVIatTN~~~-------------~LdpaLlr~gRfd~~I~~~-~P~~eeR~~----Il~~~l~~~------------- 604 (884)
..-|++++|... .++++|++ |||..+.+. .|+.+.-.. |+..|....
T Consensus 426 RcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~ 503 (682)
T COG1241 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503 (682)
T ss_pred hhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccc
Confidence 345778888764 37889999 999766543 455543222 444442110
Q ss_pred --------------------CCCCcccHHHHH-----hh----------CCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 002754 605 --------------------PMADDVDYLAVA-----SM----------TDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 605 --------------------~~~~didl~~lA-----~~----------t~G~s~adL~~Lv~~A~~~A~~~~~~~It~e 649 (884)
+...+.....+. .+ +...|.++|+.+++-|-..|..+-+..|+.+
T Consensus 504 ~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~e 583 (682)
T COG1241 504 EERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEE 583 (682)
T ss_pred ccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHH
Confidence 111111111111 11 1236788899999988888888888889999
Q ss_pred HHHHHHHHHHc
Q 002754 650 DLLQAAQIEER 660 (884)
Q Consensus 650 di~~Al~~~~~ 660 (884)
|+.+|+..+..
T Consensus 584 D~~eAi~lv~~ 594 (682)
T COG1241 584 DVDEAIRLVDF 594 (682)
T ss_pred HHHHHHHHHHH
Confidence 99998876643
No 250
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.02 E-value=3.3e-05 Score=83.87 Aligned_cols=134 Identities=22% Similarity=0.254 Sum_probs=86.5
Q ss_pred cEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccchhh---hhHHHHHHh-------cCCcEEEhhhHHHh
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRV---RSLYQEAKD-------NAPSVVFIDELDAV 522 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l---~~lf~~a~~-------~~p~Il~iDEId~l 522 (884)
+.|++||||+|||+...+.|..+..+...-++--..+..-..+...+ ...|...+. ..+..+++||.|..
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM 143 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM 143 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHh
Confidence 68999999999999999999987554222111100100000011111 123433332 25678999999998
Q ss_pred hhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHc
Q 002754 523 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 602 (884)
Q Consensus 523 ~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~ 602 (884)
..+ +.+.|-..+..+ ..++-|+.-+|++..+.|++.+ ||. .+.|.+.+......++.+++.
T Consensus 144 T~~--------------AQnALRRviek~--t~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 144 TRD--------------AQNALRRVIEKY--TANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred hHH--------------HHHHHHHHHHHh--ccceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHh
Confidence 655 667777777644 3566666778999999999998 776 667777777777777777765
Q ss_pred cCC
Q 002754 603 KKP 605 (884)
Q Consensus 603 ~~~ 605 (884)
.-.
T Consensus 205 ~e~ 207 (360)
T KOG0990|consen 205 SEQ 207 (360)
T ss_pred cch
Confidence 443
No 251
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.02 E-value=7.3e-06 Score=82.44 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=67.7
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecchh--h--------hh---hccccch--hhhhHH
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF--V--------EI---YVGVGAS--RVRSLY 503 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~--~--------~~---~~g~~~~--~l~~lf 503 (884)
..+.++++.++.| +.|.||||+|||||+++|+|...+..+.+..... . .. |+.+-.. .-+-.+
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~l 93 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEI 93 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHH
Confidence 4667788888877 8899999999999999999988766665543221 0 00 1111111 112335
Q ss_pred HHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCC
Q 002754 504 QEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (884)
Q Consensus 504 ~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~ 567 (884)
..+....|.++++||...-+. ...+..+..++..+. .. +..+|.+|+.++
T Consensus 94 aral~~~p~illlDEP~~~LD----------~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 143 (163)
T cd03216 94 ARALARNARLLILDEPTAALT----------PAEVERLFKVIRRLR---AQ-GVAVIFISHRLD 143 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCC----------HHHHHHHHHHHHHHH---HC-CCEEEEEeCCHH
Confidence 555667899999999844322 223334555554442 22 345555566544
No 252
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.02 E-value=7e-05 Score=87.91 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=82.3
Q ss_pred ccccCchhHHHHHHHHHHhhcc-cccccccc-cccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecch--h--hhhh
Q 002754 418 SDVAGLGKIRLELEEIVKFFTH-GEMYRRRG-VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ--F--VEIY 491 (884)
Q Consensus 418 ~~~~gl~~~~~~l~~lv~~~~~-~~~~~~~g-~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~--~--~~~~ 491 (884)
+.+.+++.+|.++.= ..|+. ...+...| ++-.-+|||+|-||||||.+++.+...+..-.++ ++-. - ...|
T Consensus 429 PsIye~edvKkglLL--qLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSavGLTay 505 (804)
T KOG0478|consen 429 PSIYELEDVKKGLLL--QLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSAVGLTAY 505 (804)
T ss_pred hhhhcccchhhhHHH--HHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccchhcceee
Confidence 345567777765532 22322 12222222 2223359999999999999999999876543322 2211 0 1112
Q ss_pred ccccchhhhhHHHHH---HhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhc------cc--cCCCceEEE
Q 002754 492 VGVGASRVRSLYQEA---KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD------GF--EGRGNVITI 560 (884)
Q Consensus 492 ~g~~~~~l~~lf~~a---~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld------~~--~~~~~VlVI 560 (884)
+...... +++..+. -....++-.|||+|++... .+.+|.+.+++=. |+ .-+...-||
T Consensus 506 Vtrd~dt-kqlVLesGALVLSD~GiCCIDEFDKM~dS-----------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVL 573 (804)
T KOG0478|consen 506 VTKDPDT-RQLVLESGALVLSDNGICCIDEFDKMSDS-----------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVL 573 (804)
T ss_pred EEecCcc-ceeeeecCcEEEcCCceEEchhhhhhhHH-----------HHHHHHHHHHHhhhhHhhcceeeeccccceee
Confidence 2111110 1111111 1123457899999998543 2234444433211 00 112345688
Q ss_pred eccCCCC-------------CCCccCCCCCccccccc-CCCCChh
Q 002754 561 ASTNRPD-------------ILDPALVRPGRFDRKIF-IPKPGLI 591 (884)
Q Consensus 561 atTN~~~-------------~LdpaLlr~gRfd~~I~-~~~P~~e 591 (884)
++.|... .|+|.|++ |||.++- +..|+..
T Consensus 574 AaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 574 AAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred eeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 8888532 47899999 9996653 4556654
No 253
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.1e-05 Score=81.71 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=44.1
Q ss_pred HHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 432 ~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
++...-+...+|.++++.+..| +.+.||||+|||||+|.|||-+.+..++|.+.
T Consensus 7 ~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~ 62 (209)
T COG4133 7 NLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 (209)
T ss_pred hhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence 3333344567888899999887 88999999999999999999998888887654
No 254
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.97 E-value=6.4e-05 Score=80.10 Aligned_cols=156 Identities=20% Similarity=0.239 Sum_probs=101.9
Q ss_pred cEEEECCCCCCchhHHHHhhhhh-c--cceeeeecchhhh-------------h--------hccccch-hhhhHHHHHH
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEA-G--VNFFSISASQFVE-------------I--------YVGVGAS-RVRSLYQEAK 507 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el-~--~~~~~is~s~~~~-------------~--------~~g~~~~-~l~~lf~~a~ 507 (884)
+++++||+|+||-|.+.+|.+++ | ..-..+..-.|.. . -.|.... -+..+...+.
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 48999999999999999998876 2 1111111111110 0 1121111 1234444433
Q ss_pred hc---------CCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCc
Q 002754 508 DN---------APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGR 578 (884)
Q Consensus 508 ~~---------~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gR 578 (884)
+. ...+++|-|.|.+..+ +...|-..|+... +++-+|..+|....+-+++.+++
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEkYs--~~~RlIl~cns~SriIepIrSRC- 178 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRSRC- 178 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHHHh--cCceEEEEecCcccchhHHhhhe-
Confidence 22 3458999999998655 6777777777544 45567777788888888998843
Q ss_pred ccccccCCCCChhhHHHHHHHHHccCCCC-CcccHHHHHhhCCCCCHHHH
Q 002754 579 FDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (884)
Q Consensus 579 fd~~I~~~~P~~eeR~~Il~~~l~~~~~~-~didl~~lA~~t~G~s~adL 627 (884)
..|.+|.|+.++...++...+.+-++. +..-+..++..+.|.-.+.|
T Consensus 179 --l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAl 226 (351)
T KOG2035|consen 179 --LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRAL 226 (351)
T ss_pred --eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHH
Confidence 268999999999999999888765544 23346677888777655554
No 255
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.97 E-value=6.3e-05 Score=87.67 Aligned_cols=226 Identities=14% Similarity=0.180 Sum_probs=127.2
Q ss_pred cccccccCchhHHHHHHHHHHhhcccccccccccccC--CcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhc
Q 002754 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIP--GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (884)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~--~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 492 (884)
-.|+.+.|-+.++.++-= ..|+.......-|..+. -+|||+|.||+|||-++++.++.++...+ +++..... .
T Consensus 342 Sl~PsIyGhe~VK~GilL--~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSSa--A 416 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGILL--SLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASSA--A 416 (764)
T ss_pred hhCccccchHHHHhhHHH--HHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCccccc--c
Confidence 357778888888766532 22333332333233333 34999999999999999999998765443 22221111 0
Q ss_pred cccch------hhhhHHHH--HHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccc---c--------C
Q 002754 493 GVGAS------RVRSLYQE--AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---E--------G 553 (884)
Q Consensus 493 g~~~~------~l~~lf~~--a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~---~--------~ 553 (884)
|-+.. .-...++. +.-..-+|-.|||+|++... -...+...|+.- . -
T Consensus 417 GLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqvAihEAMEQQtISIaKAGv~aTL 482 (764)
T KOG0480|consen 417 GLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQVAIHEAMEQQTISIAKAGVVATL 482 (764)
T ss_pred cceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH--------------hHHHHHHHHHhheehheecceEEee
Confidence 11100 00011111 01122358899999998543 123344444421 0 1
Q ss_pred CCceEEEeccCCCC-------------CCCccCCCCCcccccc-cCCCCChhhHHHHHHHHHccC---------------
Q 002754 554 RGNVITIASTNRPD-------------ILDPALVRPGRFDRKI-FIPKPGLIGRMEILKVHARKK--------------- 604 (884)
Q Consensus 554 ~~~VlVIatTN~~~-------------~LdpaLlr~gRfd~~I-~~~~P~~eeR~~Il~~~l~~~--------------- 604 (884)
+...-||+++|+.. .+.+++++ |||..+ -++.|+...-..|-++.+..+
T Consensus 483 nARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~ 560 (764)
T KOG0480|consen 483 NARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTL 560 (764)
T ss_pred cchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccH
Confidence 23456788888753 36789998 999654 455666655444444333211
Q ss_pred --------------CCCCcccHHHH---------------HhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 002754 605 --------------PMADDVDYLAV---------------ASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (884)
Q Consensus 605 --------------~~~~didl~~l---------------A~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al 655 (884)
+......-..+ ...+-+.|.++|+.|++-+-..|...-+..+|.+|+.+|+
T Consensus 561 e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~ 640 (764)
T KOG0480|consen 561 EQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAV 640 (764)
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHH
Confidence 10000000001 0113357889999999988888887778889999999998
Q ss_pred HHHHcC
Q 002754 656 QIEERG 661 (884)
Q Consensus 656 ~~~~~g 661 (884)
+.....
T Consensus 641 eLlk~S 646 (764)
T KOG0480|consen 641 ELLKKS 646 (764)
T ss_pred HHHHhh
Confidence 866544
No 256
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.96 E-value=2.7e-05 Score=77.45 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=44.7
Q ss_pred HHHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeee
Q 002754 428 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (884)
Q Consensus 428 ~~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (884)
.++.++...-.+..++...++.+..| ++|+||+|||||||+|++|.-..+..+.+-
T Consensus 4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~ 61 (223)
T COG4619 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61 (223)
T ss_pred hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEE
Confidence 34555555566777888888888887 999999999999999999997776666554
No 257
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.94 E-value=3.2e-06 Score=88.46 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=38.7
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (213)
T cd03259 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59 (213)
T ss_pred eCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 33344677888888887 8899999999999999999988776666544
No 258
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.94 E-value=3.4e-06 Score=86.12 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=34.8
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeee
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (884)
..+.++++.+..| ++|.||||+|||||+++|+|...+.-+.+
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v 56 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI 56 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 4567778888877 88999999999999999999876655544
No 259
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.93 E-value=1e-05 Score=79.81 Aligned_cols=81 Identities=25% Similarity=0.293 Sum_probs=54.1
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecchhhhh-hccccc-hhh-hhHHHHHHhcCCcEEE
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGA-SRV-RSLYQEAKDNAPSVVF 515 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~-~~g~~~-~~l-~~lf~~a~~~~p~Il~ 515 (884)
..+..+++.+..| ++|.||||+|||||+++|+|...+..+.+........ |+.+-. +.. +-.+..+....|.+++
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3566777777776 8899999999999999999988777776655431111 222111 111 2234445567788999
Q ss_pred hhhHHH
Q 002754 516 IDELDA 521 (884)
Q Consensus 516 iDEId~ 521 (884)
+||...
T Consensus 94 lDEP~~ 99 (144)
T cd03221 94 LDEPTN 99 (144)
T ss_pred EeCCcc
Confidence 999854
No 260
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=6.8e-06 Score=81.84 Aligned_cols=115 Identities=23% Similarity=0.261 Sum_probs=67.3
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecchh--hh-------h---hccc-cchh-hhhHHH
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF--VE-------I---YVGV-GASR-VRSLYQ 504 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~--~~-------~---~~g~-~~~~-l~~lf~ 504 (884)
..+...++.++.| ++|+||||+|||||+++|++.+.+..+++..... .. . |+.+ ..+. -+-.+.
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~ 92 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALA 92 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHH
Confidence 3566777887776 8899999999999999999988776665554331 00 0 1111 1111 122344
Q ss_pred HHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC
Q 002754 505 EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (884)
Q Consensus 505 ~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L 569 (884)
.+....|.++++||...-+. ...+..+..++..+. .. +..+|.+|+.++.+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD----------~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~ 143 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLD----------PASRERLLELLRELA---EE-GRTVIIVTHDPELA 143 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCC----------HHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 44556688999999854322 222334444444432 22 34556666665543
No 261
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.93 E-value=9.4e-06 Score=85.43 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhc
Q 002754 425 KIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (884)
Q Consensus 425 ~~~~~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~ 476 (884)
+..++++++...+....++.++++.+..| +.|+||||+|||||++.++++..
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ 82 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP 82 (257)
T ss_pred cceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC
Confidence 34456666666777788889999999877 99999999999999999998763
No 262
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.92 E-value=3.6e-05 Score=92.82 Aligned_cols=100 Identities=22% Similarity=0.298 Sum_probs=62.9
Q ss_pred ceEEEeccCCC--CCCCccCCCCCccc---ccccCCC--C-ChhhHHHHHHHHHccCC---CCCcccHHHH---H---hh
Q 002754 556 NVITIASTNRP--DILDPALVRPGRFD---RKIFIPK--P-GLIGRMEILKVHARKKP---MADDVDYLAV---A---SM 618 (884)
Q Consensus 556 ~VlVIatTN~~--~~LdpaLlr~gRfd---~~I~~~~--P-~~eeR~~Il~~~l~~~~---~~~didl~~l---A---~~ 618 (884)
++.||+++|.. ..++|+|.. ||. ..+.|.. + +.+.+..+++...+... ....++-..+ . .+
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57788888764 567899887 775 4455542 2 34445555553332211 1122332222 1 11
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 002754 619 TDG------MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (884)
Q Consensus 619 t~G------~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~ 657 (884)
..| ...++|..+++.|...|...+...|+.+|+.+|..+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 122 347899999999999999999999999999998754
No 263
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.92 E-value=5e-06 Score=85.02 Aligned_cols=68 Identities=32% Similarity=0.522 Sum_probs=46.3
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccc-cchhhhhHHHHHHhcCCcEEEhhhHH
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELD 520 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~-~~~~l~~lf~~a~~~~p~Il~iDEId 520 (884)
..|++|+||+|+|||+||-+|+.++ +.+...++..+++...-.. ........++... .+++++|||+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG 118 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLG 118 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCT
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccc
Confidence 4569999999999999999999865 7778888888877653221 1122344555554 34689999984
No 264
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.92 E-value=1.1e-05 Score=81.92 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=34.8
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeee
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (884)
..+..+++.+..| +.|+||||+|||||++.|+|...+..+.+
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 3567788888877 88999999999999999999876655544
No 265
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.92 E-value=1.1e-05 Score=81.59 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=34.7
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeee
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (884)
.+.++++.++.| ++|+||||+|||||+++|+|...+..+++.
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~ 60 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence 566777888777 899999999999999999998866655553
No 266
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.91 E-value=3.8e-05 Score=89.64 Aligned_cols=180 Identities=23% Similarity=0.289 Sum_probs=101.9
Q ss_pred cEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh-----hccccchhh-------hhHHHHHHhcCCcEEEhh
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFID 517 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~l-------~~lf~~a~~~~p~Il~iD 517 (884)
.+++.|++||||+++++++.... +.+++.++|..+... .+|...+.+ ...+. ....+++|||
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ld 244 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFE---RANEGTLLLD 244 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceE---ECCCCEEEEe
Confidence 48999999999999999997643 568999999875332 223211110 01122 2234689999
Q ss_pred hHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc---------CCCceEEEeccCCCC-------CCCccCCCCCcccc
Q 002754 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD-------ILDPALVRPGRFDR 581 (884)
Q Consensus 518 EId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~---------~~~~VlVIatTN~~~-------~LdpaLlr~gRfd~ 581 (884)
|++.+... ....|+..++... ...++.||++||..- .+.+.+.. |+.
T Consensus 245 ~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~- 307 (457)
T PRK11361 245 EIGEMPLV--------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN- 307 (457)
T ss_pred chhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-
Confidence 99998655 5566666655311 013578888887531 22233332 332
Q ss_pred cccCCCCChhhHHH----HHHHHHccC----CCC-Cccc---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 002754 582 KIFIPKPGLIGRME----ILKVHARKK----PMA-DDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 582 ~I~~~~P~~eeR~~----Il~~~l~~~----~~~-~did---l~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~e 649 (884)
.+.+..|...+|.+ ++..++... ... ..++ +..+....-.-+.++|.++++.|+.. .....|+.+
T Consensus 308 ~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~---~~~~~i~~~ 384 (457)
T PRK11361 308 VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM---NSGPIIFSE 384 (457)
T ss_pred cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh---CCCCcccHH
Confidence 34566666666643 333333221 111 1233 33344444334567777777777643 344578888
Q ss_pred HHHHHH
Q 002754 650 DLLQAA 655 (884)
Q Consensus 650 di~~Al 655 (884)
|+...+
T Consensus 385 ~l~~~~ 390 (457)
T PRK11361 385 DLPPQI 390 (457)
T ss_pred HChHhh
Confidence 875443
No 267
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=2.2e-05 Score=85.83 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=80.2
Q ss_pred cccCCcEEEECCCCCCchhHHHHhhhhhccc----------------eeeeecchhhhhhccccchhhhhHHHHHHh---
Q 002754 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----------------FFSISASQFVEIYVGVGASRVRSLYQEAKD--- 508 (884)
Q Consensus 448 ~~i~~giLL~GPpGtGKTtLakaLA~el~~~----------------~~~is~s~~~~~~~g~~~~~l~~lf~~a~~--- 508 (884)
.+++..++|+||.|+||+++|..+|..+-.. +..+....-. .. -....++.+.+.+..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-~~--I~idqiR~l~~~~~~~p~ 92 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-RL--HSIETPRAIKKQIWIHPY 92 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC-Cc--CcHHHHHHHHHHHhhCcc
Confidence 3567779999999999999999998865321 1111110000 00 011223444444432
Q ss_pred -cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCC
Q 002754 509 -NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 587 (884)
Q Consensus 509 -~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~ 587 (884)
....|++||++|.+... ..|.||..++ .+..++++|..|+.++.+.|.+++ |.. .+.|++
T Consensus 93 e~~~kv~ii~~ad~mt~~--------------AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~ 153 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLD--------------AISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPM 153 (290)
T ss_pred CCCceEEEEechhhcCHH--------------HHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cce-EEEccc
Confidence 23458999999998765 7899999999 567788999888899999999998 543 667766
Q ss_pred C
Q 002754 588 P 588 (884)
Q Consensus 588 P 588 (884)
+
T Consensus 154 ~ 154 (290)
T PRK05917 154 E 154 (290)
T ss_pred h
Confidence 4
No 268
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.90 E-value=5.2e-05 Score=88.95 Aligned_cols=179 Identities=18% Similarity=0.239 Sum_probs=101.9
Q ss_pred cEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh-----hccccchhh-------hhHHHHHHhcCCcEEEhh
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFID 517 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~l-------~~lf~~a~~~~p~Il~iD 517 (884)
.++|.|++|||||++|++|.... +.+|+.++|+.+... .+|...+.. ...|+. ...+.+|||
T Consensus 163 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~ 239 (469)
T PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLD 239 (469)
T ss_pred eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEe
Confidence 38999999999999999998865 468999999875322 223221110 011222 234579999
Q ss_pred hHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc---------CCCceEEEeccCCC-------CCCCccCCCCCcccc
Q 002754 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGRFDR 581 (884)
Q Consensus 518 EId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~---------~~~~VlVIatTN~~-------~~LdpaLlr~gRfd~ 581 (884)
|++.+... ....|+..++... ...++-||+||+.. ..+.+.|.. ||.
T Consensus 240 ~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~- 302 (469)
T PRK10923 240 EIGDMPLD--------------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN- 302 (469)
T ss_pred ccccCCHH--------------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-
Confidence 99988654 4556666555311 12356788888653 123444544 553
Q ss_pred cccCCCCChhhHH----HHHHHHHccC----CCC-Cccc---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 002754 582 KIFIPKPGLIGRM----EILKVHARKK----PMA-DDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 582 ~I~~~~P~~eeR~----~Il~~~l~~~----~~~-~did---l~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~e 649 (884)
.+.+..|...+|. .++..++... ... ..+. +..|..+.-.-+-++|+++++.++.. .....|+.+
T Consensus 303 ~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~---~~~~~i~~~ 379 (469)
T PRK10923 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVM---AAGQEVLIQ 379 (469)
T ss_pred ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CCCCcccHH
Confidence 3444445555544 3455554321 111 1122 33444444334556777777776643 344578888
Q ss_pred HHHHH
Q 002754 650 DLLQA 654 (884)
Q Consensus 650 di~~A 654 (884)
|+...
T Consensus 380 ~l~~~ 384 (469)
T PRK10923 380 DLPGE 384 (469)
T ss_pred HCcHh
Confidence 87544
No 269
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.89 E-value=2.5e-05 Score=91.40 Aligned_cols=184 Identities=17% Similarity=0.192 Sum_probs=100.3
Q ss_pred cEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh-----hccccchhhhhH----HHHHHhcCCcEEEhhhHH
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRVRSL----YQEAKDNAPSVVFIDELD 520 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~l~~l----f~~a~~~~p~Il~iDEId 520 (884)
.+++.|.+||||+++++++.... +.+|+.++|+.+... .+|...+.+... .........+.+||||++
T Consensus 159 ~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~ 238 (463)
T TIGR01818 159 TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIG 238 (463)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchh
Confidence 48999999999999999998754 568999998875332 233221111000 001112335689999999
Q ss_pred HhhhhcCCCCCCCchhHHHHHHHHHHhhcccc---------CCCceEEEeccCCCC-------CCCccCCCCCccc-ccc
Q 002754 521 AVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD-------ILDPALVRPGRFD-RKI 583 (884)
Q Consensus 521 ~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~---------~~~~VlVIatTN~~~-------~LdpaLlr~gRfd-~~I 583 (884)
.+... ....|+..++... ...++-||++|+..- .+.+.|.. |+. ..|
T Consensus 239 ~l~~~--------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i 302 (463)
T TIGR01818 239 DMPLD--------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRI 302 (463)
T ss_pred hCCHH--------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCccee
Confidence 98654 4555555554311 113567888876531 22233333 333 244
Q ss_pred cCCCCC--hhhHHHHHHHHHccC----CCC-CcccHHH---HHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 002754 584 FIPKPG--LIGRMEILKVHARKK----PMA-DDVDYLA---VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQ 653 (884)
Q Consensus 584 ~~~~P~--~eeR~~Il~~~l~~~----~~~-~didl~~---lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~ 653 (884)
.+|+.. .++...++..++... +.. ..++-.. |....---+-++|.++++.|+..+ ....|+.+|+..
T Consensus 303 ~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~ 379 (463)
T TIGR01818 303 HLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPA 379 (463)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchH
Confidence 555443 234444555554322 111 1233333 333322223477777777776443 345788888865
Q ss_pred HH
Q 002754 654 AA 655 (884)
Q Consensus 654 Al 655 (884)
.+
T Consensus 380 ~~ 381 (463)
T TIGR01818 380 EL 381 (463)
T ss_pred HH
Confidence 54
No 270
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.86 E-value=4.7e-06 Score=87.16 Aligned_cols=46 Identities=26% Similarity=0.339 Sum_probs=37.3
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
....+.++++.+..| ++|.||||+|||||+++|+|...+..+++..
T Consensus 12 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~ 59 (213)
T cd03301 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59 (213)
T ss_pred CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 334577788888877 8899999999999999999988766665543
No 271
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.86 E-value=1.8e-05 Score=84.17 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=37.3
Q ss_pred ccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecch
Q 002754 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (884)
Q Consensus 443 ~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 486 (884)
..++++.+|.| ++|+||||+||||++|.|.|.+-+..+.+....
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G 85 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG 85 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecC
Confidence 36788999998 899999999999999999998877776665443
No 272
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.85 E-value=5.6e-06 Score=86.19 Aligned_cols=45 Identities=36% Similarity=0.363 Sum_probs=37.3
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
...+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 34677788888877 8999999999999999999988777666643
No 273
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=1.3e-05 Score=81.65 Aligned_cols=43 Identities=30% Similarity=0.460 Sum_probs=35.4
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeee
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (884)
...+.++++.++.| +.|+||||+|||||+++|+|...+..+++
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 34577788888877 88999999999999999999876655554
No 274
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.84 E-value=0.00015 Score=85.83 Aligned_cols=66 Identities=26% Similarity=0.266 Sum_probs=40.5
Q ss_pred ccCcccccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccceeee
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (884)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (884)
++..+...+++.--.+.+.+++......-. +-...+-++|+||+||||||+++.||.+++..+.+.
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 334445555555444555455444432110 111112378899999999999999999998776654
No 275
>PRK15115 response regulator GlrR; Provisional
Probab=97.84 E-value=3.1e-05 Score=90.19 Aligned_cols=180 Identities=21% Similarity=0.261 Sum_probs=101.7
Q ss_pred cEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh-----hccccchhh-------hhHHHHHHhcCCcEEEhh
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFID 517 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~l-------~~lf~~a~~~~p~Il~iD 517 (884)
.++|+|++|||||++|++|.... +.+|+.++|..+... .+|...+.+ ..+++ ....+.+|||
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ 235 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGTLFLD 235 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCEEEEE
Confidence 38999999999999999997754 568999999865332 122211100 01222 2234689999
Q ss_pred hHHHhhhhcCCCCCCCchhHHHHHHHHHHhhcccc---------CCCceEEEeccCCCCCCCccCCCCCcccc-------
Q 002754 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPDILDPALVRPGRFDR------- 581 (884)
Q Consensus 518 EId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~---------~~~~VlVIatTN~~~~LdpaLlr~gRfd~------- 581 (884)
|++.+... ....|+..++... ...++.+|++|+.. ++. +...|+|..
T Consensus 236 ~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~-~~~~~~f~~~l~~~l~ 298 (444)
T PRK15115 236 EIGDMPAP--------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPK-AMARGEFREDLYYRLN 298 (444)
T ss_pred ccccCCHH--------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHH-HHHcCCccHHHHHhhc
Confidence 99998654 4556666554311 11367888888752 222 222344421
Q ss_pred cccCCCCChhhHHH----HHHHHHccC----CC----CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 002754 582 KIFIPKPGLIGRME----ILKVHARKK----PM----ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 582 ~I~~~~P~~eeR~~----Il~~~l~~~----~~----~~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~e 649 (884)
.+.+..|...+|.+ ++..++... .. .+..-+..|..+.-.-+.++|.++++.|+.. .....|+.+
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~---~~~~~i~~~ 375 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL---TSSPVISDA 375 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CCCCccChh
Confidence 34455566666643 334444321 11 1222244444444334556777777776643 344578888
Q ss_pred HHHHHH
Q 002754 650 DLLQAA 655 (884)
Q Consensus 650 di~~Al 655 (884)
++...+
T Consensus 376 ~l~~~~ 381 (444)
T PRK15115 376 LVEQAL 381 (444)
T ss_pred hhhhhh
Confidence 876443
No 276
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.83 E-value=2.6e-05 Score=79.08 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=34.9
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeee
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (884)
.+.++++.++.| +.|+||||+|||||+++|+|...+..+.+.
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 567778888877 889999999999999999998766655544
No 277
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.83 E-value=1.8e-05 Score=80.68 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=35.2
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeee
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (884)
.+.++++.++.| ++|.||||+|||||+++|+|...+..+++.
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 567788888877 889999999999999999998766655553
No 278
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.82 E-value=2.4e-05 Score=78.95 Aligned_cols=44 Identities=30% Similarity=0.401 Sum_probs=35.5
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+..| ++|+||||+|||||+++|+|...+..+++..
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 3567778888777 8999999999999999999987665555443
No 279
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.82 E-value=2.6e-05 Score=81.50 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=36.4
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeee
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (884)
....+.++++.++.| ++|+||||+|||||+++|+|...+..+.+.
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 60 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK 60 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 334577788888877 889999999999999999998766555553
No 280
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.82 E-value=6.3e-06 Score=86.36 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeee
Q 002754 426 IRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (884)
Q Consensus 426 ~~~~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (884)
.+++++++.+.|++...+.++++++++| +.+.||+|+|||||+|.|.|.+.+..+.+
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI 65 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE
Confidence 4556677888899999999999999998 78999999999999999999886665544
No 281
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.81 E-value=8.7e-06 Score=86.78 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=36.7
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.+.++.++.| ++|+||||+|||||++.++|-+.+..+.+..
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~ 63 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEE
Confidence 4556778888877 9999999999999999999998887766643
No 282
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.80 E-value=8.2e-06 Score=85.21 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=36.9
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
...+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 34677788888877 8899999999999999999988766665543
No 283
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.80 E-value=2.3e-05 Score=86.53 Aligned_cols=55 Identities=25% Similarity=0.265 Sum_probs=45.5
Q ss_pred HHHHHhhc-ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 431 EEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 431 ~~lv~~~~-~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
.++.+.|+ ....+.++++.++.| +.|.||||+|||||+|+|+|...+..+++...
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~ 65 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVL 65 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEc
Confidence 44555566 467788999999988 88999999999999999999998887776544
No 284
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.79 E-value=3.6e-05 Score=78.12 Aligned_cols=57 Identities=33% Similarity=0.530 Sum_probs=45.3
Q ss_pred HHHHHHhhccc-ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecch
Q 002754 430 LEEIVKFFTHG-EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (884)
Q Consensus 430 l~~lv~~~~~~-~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 486 (884)
.+++.+.|.+. ..+.++++.++.| ++++||+|+|||||+|.|.++..+..+.+....
T Consensus 4 f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~ 63 (223)
T COG2884 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG 63 (223)
T ss_pred ehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECC
Confidence 45666666543 4778899999998 889999999999999999998877766665443
No 285
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.78 E-value=2.5e-05 Score=81.56 Aligned_cols=161 Identities=25% Similarity=0.264 Sum_probs=82.4
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhcc---ceeeeec-chhhh----hh-------------cc-----------------
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGV---NFFSISA-SQFVE----IY-------------VG----------------- 493 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~---~~~~is~-s~~~~----~~-------------~g----------------- 493 (884)
..++|+||.|+|||+|++.+...+.. ..+.+.. ..... .. .+
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSE 100 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-G
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchh
Confidence 34899999999999999999987722 1111111 10000 00 00
Q ss_pred ccchhhhhHHHHHHhcC-CcEEEhhhHHHhh-hhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEE-eccCC--C--
Q 002754 494 VGASRVRSLYQEAKDNA-PSVVFIDELDAVG-RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNR--P-- 566 (884)
Q Consensus 494 ~~~~~l~~lf~~a~~~~-p~Il~iDEId~l~-~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVI-atTN~--~-- 566 (884)
.....+..+++.+.... ..+++|||++.+. ... .....+..|...++......++.+| ++|+. .
T Consensus 101 ~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~ 171 (234)
T PF01637_consen 101 DSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEE 171 (234)
T ss_dssp G-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHHH
Confidence 01122344555554432 3799999999987 211 1122455555555543444554444 33321 0
Q ss_pred -CCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCC-C-CCcccHHHHHhhCCCCCH
Q 002754 567 -DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP-M-ADDVDYLAVASMTDGMVG 624 (884)
Q Consensus 567 -~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~-~-~~didl~~lA~~t~G~s~ 624 (884)
..-...+.. |+.. +.+++.+.++..+++...+.+.. + .++.++..+...+.|..+
T Consensus 172 ~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 172 FLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp TT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HH
T ss_pred hhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHH
Confidence 112334444 7876 99999999999999998876651 1 255667777777776543
No 286
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.78 E-value=2.5e-05 Score=84.34 Aligned_cols=71 Identities=27% Similarity=0.418 Sum_probs=47.4
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccccc-hhhhhHHHHHHhcCCcEEEhhhHHHh
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGA-SRVRSLYQEAKDNAPSVVFIDELDAV 522 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~~~-~~l~~lf~~a~~~~p~Il~iDEId~l 522 (884)
..+++|+||||+|||+|+-+|+.++ |.++..++..+++...-.... +....-+... -...++++|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 4569999999999999999999876 678888888887765221111 1111111121 234569999999553
No 287
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.76 E-value=2.7e-05 Score=81.42 Aligned_cols=56 Identities=23% Similarity=0.273 Sum_probs=46.4
Q ss_pred HHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 430 l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
++++...|+....+..+++.++.| ++|+||||+|||||+++|+|...+..++|.+.
T Consensus 6 v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~ 63 (237)
T COG0410 6 VENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFD 63 (237)
T ss_pred EEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEEC
Confidence 344555677777888899999988 89999999999999999999988877777543
No 288
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.76 E-value=5.2e-05 Score=82.08 Aligned_cols=48 Identities=23% Similarity=0.405 Sum_probs=38.5
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 22 ~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 71 (257)
T PRK11247 22 YGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71 (257)
T ss_pred ECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 33334667788888877 8999999999999999999988776666643
No 289
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.76 E-value=2.2e-05 Score=87.74 Aligned_cols=69 Identities=25% Similarity=0.449 Sum_probs=46.6
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccc---cchhhhhHHHHHHhcCCcEEEhhhHHHh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV---GASRVRSLYQEAKDNAPSVVFIDELDAV 522 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~---~~~~l~~lf~~a~~~~p~Il~iDEId~l 522 (884)
.+++|+||+|||||+|+.+||.++ +..++.++..++....... ........++.+. ..++|+||++...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 569999999999999999999976 6677788887776543211 1111111233333 3479999999554
No 290
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.75 E-value=0.0001 Score=72.38 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=44.6
Q ss_pred EEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhh-------------------cccc-chhh----hhHHHHH
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY-------------------VGVG-ASRV----RSLYQEA 506 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~-------------------~g~~-~~~l----~~lf~~a 506 (884)
++|+||||+|||+++..+++.. +.+.+.++........ .... .... ......+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999876 3455555554322110 0000 0001 1123344
Q ss_pred HhcCCcEEEhhhHHHhhhh
Q 002754 507 KDNAPSVVFIDELDAVGRE 525 (884)
Q Consensus 507 ~~~~p~Il~iDEId~l~~~ 525 (884)
....|.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5567889999999988643
No 291
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=3.2e-05 Score=80.78 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=38.1
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+...
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 334667788888877 88999999999999999999887777766543
No 292
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.74 E-value=2.9e-05 Score=86.12 Aligned_cols=69 Identities=28% Similarity=0.432 Sum_probs=47.6
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhhccc-cchhhhhHHHHHHhcCCcEEEhhhHHH
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDA 521 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~~g~-~~~~l~~lf~~a~~~~p~Il~iDEId~ 521 (884)
..|++|+||+|||||+|+.+||.++ +.++..+.+.+++...... ....+...++.+. ..++|+|||+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCC
Confidence 4679999999999999999999987 6677777777765442211 1112233444433 456999999944
No 293
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.73 E-value=6.2e-06 Score=91.53 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=42.7
Q ss_pred HHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 431 ~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+++.+.|++...+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 11 ~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i 66 (306)
T PRK13537 11 RNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66 (306)
T ss_pred EeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 34444455555778888999887 8999999999999999999988777666644
No 294
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.73 E-value=5.2e-05 Score=77.42 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=28.5
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhh
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAG 473 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~ 473 (884)
..+.++++.++.| +.|+||||+|||||+++++.
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3467788888887 88999999999999999974
No 295
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.72 E-value=1e-05 Score=85.79 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=37.8
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (232)
T cd03218 10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL 59 (232)
T ss_pred eCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 33344677788888877 8899999999999999999988766665543
No 296
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.72 E-value=8.7e-05 Score=86.17 Aligned_cols=183 Identities=22% Similarity=0.219 Sum_probs=100.0
Q ss_pred cEEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh-----hccccchhh----hhHHHHHHhcCCcEEEhhhHH
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV----RSLYQEAKDNAPSVVFIDELD 520 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~~~l----~~lf~~a~~~~p~Il~iDEId 520 (884)
.++++|.+|+||+++++++.... +.+|+.++|+..... .+|...+.+ ...........++++|||||+
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~ 243 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccc
Confidence 48999999999999999997543 578999999865332 222211111 000001122346789999999
Q ss_pred HhhhhcCCCCCCCchhHHHHHHHHHHhhcccc---------CCCceEEEeccCCCCCCCccCCCCCcccc-------ccc
Q 002754 521 AVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPDILDPALVRPGRFDR-------KIF 584 (884)
Q Consensus 521 ~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~---------~~~~VlVIatTN~~~~LdpaLlr~gRfd~-------~I~ 584 (884)
.+... ....|+..++... ...++.+|++|+..- .....+|+|.. .+.
T Consensus 244 ~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~ 306 (441)
T PRK10365 244 DISPM--------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVA 306 (441)
T ss_pred cCCHH--------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccce
Confidence 98655 4556666555311 012466787775531 12223344432 345
Q ss_pred CCCCChhhHHH----HHHHHHccC----CC-CCccc---HHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 002754 585 IPKPGLIGRME----ILKVHARKK----PM-ADDVD---YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (884)
Q Consensus 585 ~~~P~~eeR~~----Il~~~l~~~----~~-~~did---l~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~ 652 (884)
+..|...+|.+ ++..++... .. ...++ +..|....-.-+.++|.++++.|+.. .....|+.+++.
T Consensus 307 i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~---~~~~~i~~~~l~ 383 (441)
T PRK10365 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL---LTGEYISERELP 383 (441)
T ss_pred ecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh---CCCCccchHhCc
Confidence 55566665543 444444321 11 11123 33344433223456666777766543 344568888876
Q ss_pred HHH
Q 002754 653 QAA 655 (884)
Q Consensus 653 ~Al 655 (884)
..+
T Consensus 384 ~~~ 386 (441)
T PRK10365 384 LAI 386 (441)
T ss_pred hhh
Confidence 543
No 297
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=9.1e-06 Score=92.06 Aligned_cols=45 Identities=29% Similarity=0.476 Sum_probs=37.3
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
..+.++++.++.| +.|+||||+|||||+++|||...+..+.+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~ 64 (356)
T PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIG 64 (356)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEEC
Confidence 4567778888877 88999999999999999999887777766543
No 298
>PF05729 NACHT: NACHT domain
Probab=97.71 E-value=0.00016 Score=71.46 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=70.7
Q ss_pred EEEECCCCCCchhHHHHhhhhhcc---------ceeeeecchhhhh------------hccccchhhhhHH-HHHHhcCC
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAGV---------NFFSISASQFVEI------------YVGVGASRVRSLY-QEAKDNAP 511 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~---------~~~~is~s~~~~~------------~~g~~~~~l~~lf-~~a~~~~p 511 (884)
++|+|++|+|||++++.++..+.. ..+.+.+...... ........+...+ ........
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 789999999999999999875511 1223333322211 0001111111111 22234456
Q ss_pred cEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChh
Q 002754 512 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLI 591 (884)
Q Consensus 512 ~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~e 591 (884)
.+++||.+|.+...... ++.......+..++.. ....+..++|.+.+.....+...+... ..+.+++.+.+
T Consensus 83 ~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~----~~~~l~~~~~~ 153 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQA----QILELEPFSEE 153 (166)
T ss_pred eEEEEechHhcccchhh---hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCC----cEEEECCCCHH
Confidence 68999999998653211 0111122223333321 012223333333322222223222221 46788899999
Q ss_pred hHHHHHHHHHcc
Q 002754 592 GRMEILKVHARK 603 (884)
Q Consensus 592 eR~~Il~~~l~~ 603 (884)
++.++++.++..
T Consensus 154 ~~~~~~~~~f~~ 165 (166)
T PF05729_consen 154 DIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHhhc
Confidence 999999988753
No 299
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.70 E-value=1.6e-05 Score=96.83 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=42.7
Q ss_pred HHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 433 lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+...|+...++.++++.+..| ++|+||||+|||||+++|+|...+..|.|..
T Consensus 7 ls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~ 60 (638)
T PRK10636 7 LQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF 60 (638)
T ss_pred EEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 334455566788899999888 9999999999999999999988777776654
No 300
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.70 E-value=6e-05 Score=92.02 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=84.6
Q ss_pred HHHHHHHhhcc--cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecchhhhh------------hc
Q 002754 429 ELEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI------------YV 492 (884)
Q Consensus 429 ~l~~lv~~~~~--~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~------------~~ 492 (884)
.++++...|.. +..+.++++.++.| +.|+|++|||||||+|.|.|-..+..|++..+..--. |+
T Consensus 473 ~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V 552 (709)
T COG2274 473 EFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYV 552 (709)
T ss_pred EEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEE
Confidence 34455555543 35778899999999 9999999999999999999988887777655432111 22
Q ss_pred cccchhh-hhHHHHHHhcCCcEEEhhhHHHhhhh-------------------cCCCCCCCchhHHHHHHHHHHhhcccc
Q 002754 493 GVGASRV-RSLYQEAKDNAPSVVFIDELDAVGRE-------------------RGLIKGSGGQERDATLNQLLVCLDGFE 552 (884)
Q Consensus 493 g~~~~~l-~~lf~~a~~~~p~Il~iDEId~l~~~-------------------r~~~~~Sgge~~~~~l~~LL~~ld~~~ 552 (884)
.+..--. +.+.++..-..|.. -.+|+-..+.. .++..=|||++.+..++..+ .
T Consensus 553 ~Q~~~Lf~gSI~eNi~l~~p~~-~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL------l 625 (709)
T COG2274 553 LQDPFLFSGSIRENIALGNPEA-TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL------L 625 (709)
T ss_pred cccchhhcCcHHHHHhcCCCCC-CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh------c
Confidence 2222111 45566666666642 23444332111 01111299999999999888 6
Q ss_pred CCCceEEE-eccCCCC
Q 002754 553 GRGNVITI-ASTNRPD 567 (884)
Q Consensus 553 ~~~~VlVI-atTN~~~ 567 (884)
.+++++++ .+|+..|
T Consensus 626 ~~P~ILlLDEaTSaLD 641 (709)
T COG2274 626 SKPKILLLDEATSALD 641 (709)
T ss_pred cCCCEEEEeCcccccC
Confidence 67788888 6665544
No 301
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=2.7e-05 Score=88.09 Aligned_cols=49 Identities=29% Similarity=0.365 Sum_probs=38.9
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
|+....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+...
T Consensus 16 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~ 66 (351)
T PRK11432 16 FGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66 (351)
T ss_pred ECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEEC
Confidence 33334567788888877 89999999999999999999887777766543
No 302
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.70 E-value=2.8e-05 Score=81.88 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=37.4
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecch
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 486 (884)
.+.++++.+..| +.|+|++|||||||+++|+|-..+..+.|....
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G 68 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG 68 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 567778888877 889999999999999999998877777665543
No 303
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.69 E-value=1.8e-05 Score=83.11 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=41.8
Q ss_pred HHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 431 ~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+++...+.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+...
T Consensus 15 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 71 (214)
T PRK13543 15 HALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID 71 (214)
T ss_pred eeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEEC
Confidence 33434444445678888888877 88999999999999999999887666665443
No 304
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.68 E-value=4.2e-05 Score=93.25 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=42.9
Q ss_pred HHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 432 ~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
++...|+....+.++++.++.| +.|+||||+|||||+++|+|...+..+.|..
T Consensus 8 ~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~ 62 (635)
T PRK11147 8 GAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY 62 (635)
T ss_pred eEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence 3444455556788899999887 8999999999999999999988777776654
No 305
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.68 E-value=4e-05 Score=80.36 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=36.9
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 62 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF 62 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3567788888877 8899999999999999999988776666644
No 306
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.67 E-value=1.3e-05 Score=88.90 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=40.2
Q ss_pred HhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 435 ~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..|++...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 12 ~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 63 (303)
T TIGR01288 12 KSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63 (303)
T ss_pred EEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3344445678888898887 8999999999999999999988776666644
No 307
>PRK06921 hypothetical protein; Provisional
Probab=97.67 E-value=4.1e-05 Score=83.30 Aligned_cols=67 Identities=28% Similarity=0.302 Sum_probs=42.6
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhh----ccceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHH
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELD 520 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el----~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId 520 (884)
..+++|+||+|+|||+|+.+||.++ +..++.++..++....... .......++.. ...++|+|||++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~ 187 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLF 187 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEeccc
Confidence 3569999999999999999999976 4556666665544322110 01111222222 345799999993
No 308
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.67 E-value=4.7e-05 Score=82.15 Aligned_cols=49 Identities=24% Similarity=0.393 Sum_probs=39.4
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+.+...+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+...
T Consensus 14 ~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~ 64 (251)
T PRK09544 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRN 64 (251)
T ss_pred ECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 33344677788888877 99999999999999999999887777766543
No 309
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.66 E-value=3.9e-05 Score=84.99 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=38.1
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
....+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 52 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARV 52 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 334677888888887 8899999999999999999988777776654
No 310
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.66 E-value=4.6e-05 Score=81.31 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=40.6
Q ss_pred HhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 435 ~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.....+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~ 80 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 3345556788889998887 8899999999999999999988766666544
No 311
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.65 E-value=4.4e-05 Score=79.64 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=37.6
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 334677788888877 8899999999999999999988766666654
No 312
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.65 E-value=6.2e-05 Score=77.06 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=33.6
Q ss_pred ccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 443 ~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
..++++....| +.|.||||+||||++|.||.-+.+..+.+...
T Consensus 18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~id 62 (245)
T COG4555 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTID 62 (245)
T ss_pred hhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEe
Confidence 34556666666 78999999999999999999987776665443
No 313
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.64 E-value=3.1e-05 Score=88.17 Aligned_cols=48 Identities=21% Similarity=0.404 Sum_probs=38.3
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.+...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 13 ~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~ 62 (369)
T PRK11000 13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62 (369)
T ss_pred eCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 33334567788888877 8999999999999999999988776666643
No 314
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.63 E-value=4.6e-05 Score=86.31 Aligned_cols=142 Identities=22% Similarity=0.333 Sum_probs=81.0
Q ss_pred ccccCCcEEEECCCCCCchhHHHHhhhhhcc-ceeeeecchhhhhhc------cccchhhhhHHHHHHhcCCcEEEhhhH
Q 002754 447 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-NFFSISASQFVEIYV------GVGASRVRSLYQEAKDNAPSVVFIDEL 519 (884)
Q Consensus 447 g~~i~~giLL~GPpGtGKTtLakaLA~el~~-~~~~is~s~~~~~~~------g~~~~~l~~lf~~a~~~~p~Il~iDEI 519 (884)
....|+|+.|+||+|+|||+|+.+....+.. .-.++...+|+.... ......+..+-+..... ..+|++||+
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLcfDEF 136 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLCFDEF 136 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEEEeee
Confidence 3456899999999999999999999888755 333444455543211 11112233333333333 348999998
Q ss_pred HHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHH
Q 002754 520 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKV 599 (884)
Q Consensus 520 d~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~ 599 (884)
.--... .-.++..|+..+= ..++++|+|||.+ |.-+-++.+.+....| -..+++.
T Consensus 137 ~V~Dia-----------DAmil~rLf~~l~----~~gvvlVaTSN~~----P~~Ly~~gl~r~~Flp------~I~~l~~ 191 (362)
T PF03969_consen 137 QVTDIA-----------DAMILKRLFEALF----KRGVVLVATSNRP----PEDLYKNGLQRERFLP------FIDLLKR 191 (362)
T ss_pred eccchh-----------HHHHHHHHHHHHH----HCCCEEEecCCCC----hHHHcCCcccHHHHHH------HHHHHHh
Confidence 532110 0125555655442 4688999999973 2222223333322222 2456666
Q ss_pred HHccCCCCCcccHHH
Q 002754 600 HARKKPMADDVDYLA 614 (884)
Q Consensus 600 ~l~~~~~~~didl~~ 614 (884)
++.-..+....|+..
T Consensus 192 ~~~vv~ld~~~DyR~ 206 (362)
T PF03969_consen 192 RCDVVELDGGVDYRR 206 (362)
T ss_pred ceEEEEecCCCchhh
Confidence 666566666666554
No 315
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.62 E-value=5.1e-05 Score=77.63 Aligned_cols=42 Identities=26% Similarity=0.273 Sum_probs=34.6
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeee
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (884)
.+.++++.++.| ++|+||||+|||||+++|+|...+..+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT 58 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 456677787777 899999999999999999998876666553
No 316
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.61 E-value=4.1e-05 Score=80.89 Aligned_cols=56 Identities=25% Similarity=0.314 Sum_probs=47.6
Q ss_pred HHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 429 ELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 429 ~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+++++.+.|.+.....++++.++.| ++|+||+||||||++|+|-+-..+..+.+-.
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i 60 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEE
Confidence 3456777788888889999999998 8899999999999999999988887776643
No 317
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=5e-05 Score=82.76 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=37.5
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
....+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 13 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (271)
T PRK13638 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60 (271)
T ss_pred CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEE
Confidence 334677888888877 8899999999999999999988776665543
No 318
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.61 E-value=4.5e-05 Score=86.35 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=38.3
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.+...+.++++.++.| +.|+||||+|||||+++|||...+..+.+..
T Consensus 14 ~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (353)
T TIGR03265 14 FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQ 63 (353)
T ss_pred eCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEE
Confidence 33334567778888766 8999999999999999999988777776654
No 319
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.60 E-value=0.0001 Score=71.89 Aligned_cols=83 Identities=33% Similarity=0.522 Sum_probs=53.7
Q ss_pred cEEEECCCCCCchhHHHHhhhhhcc---ceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhhhcCCC
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGV---NFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 529 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~---~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~~r~~~ 529 (884)
.|+|+|++||||+++|++|....+. +++.+++.... ..+++.+ ..+.++|+|+|.+...
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~~---- 84 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSPE---- 84 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-HH----
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCHH----
Confidence 4899999999999999999886543 45555554321 2344443 5568999999998655
Q ss_pred CCCCchhHHHHHHHHHHhhccccCCCceEEEeccC
Q 002754 530 KGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 564 (884)
Q Consensus 530 ~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN 564 (884)
....|+..+.... ..++-+|+++.
T Consensus 85 ----------~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 85 ----------AQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp ----------HHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred ----------HHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 4555555555322 45556665554
No 320
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.60 E-value=5.2e-05 Score=79.61 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=36.3
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV 64 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 4677888888877 8899999999999999999987666665543
No 321
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.58 E-value=6.9e-05 Score=75.58 Aligned_cols=41 Identities=29% Similarity=0.465 Sum_probs=33.8
Q ss_pred ccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 445 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 445 ~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
.+++.++.| +.+.||+|+|||||+..|||..-+..+.+...
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~ 59 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEc
Confidence 456677776 89999999999999999999887777766543
No 322
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.58 E-value=0.00099 Score=70.80 Aligned_cols=185 Identities=18% Similarity=0.224 Sum_probs=108.7
Q ss_pred EEEECCCCCCchhHHHHhhhhhccc---eeeeecchh-----hhhhcc--cc--chhh--------hhHHHHHH-hcCCc
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAGVN---FFSISASQF-----VEIYVG--VG--ASRV--------RSLYQEAK-DNAPS 512 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~---~~~is~s~~-----~~~~~g--~~--~~~l--------~~lf~~a~-~~~p~ 512 (884)
+.++|+-|+|||++.|++...++-. .+.++-..+ ....+. .. ...+ +.+.+... ...|-
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 7899999999999999777655322 223322211 111111 11 1111 12222222 34457
Q ss_pred EEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCC-C---ccCCCCCcccccccCCCC
Q 002754 513 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL-D---PALVRPGRFDRKIFIPKP 588 (884)
Q Consensus 513 Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~L-d---paLlr~gRfd~~I~~~~P 588 (884)
++++||.+.+..+- -..+..|...-++..+.-.++.|+=...-..+ - ..+-. |++..|.+++.
T Consensus 134 ~l~vdEah~L~~~~-----------le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir~~l~P~ 200 (269)
T COG3267 134 VLMVDEAHDLNDSA-----------LEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIRIELPPL 200 (269)
T ss_pred EEeehhHhhhChhH-----------HHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEEEecCCc
Confidence 89999999886541 11222222222222233345555533111100 0 12223 78867889999
Q ss_pred ChhhHHHHHHHHHccCCCC----CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 002754 589 GLIGRMEILKVHARKKPMA----DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (884)
Q Consensus 589 ~~eeR~~Il~~~l~~~~~~----~didl~~lA~~t~G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~ 652 (884)
+.++-...++.++...... ++..+..+...+.| .|.-+.+++..|...|...++..|+...+.
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 9998889999888765333 34446667777777 677899999999999988888888877654
No 323
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.58 E-value=5.2e-05 Score=78.38 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=32.6
Q ss_pred cccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 446 RGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 446 ~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 77777776 8999999999999999999987766665543
No 324
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.58 E-value=2e-05 Score=88.77 Aligned_cols=57 Identities=21% Similarity=0.383 Sum_probs=45.6
Q ss_pred HHHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 428 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 428 ~~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+.++++.+.|++...+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i 100 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEE
Confidence 44455555566556788889999888 8899999999999999999988777776654
No 325
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=2e-05 Score=89.91 Aligned_cols=49 Identities=24% Similarity=0.246 Sum_probs=38.0
Q ss_pred hhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 436 ~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+.....+.++++.+..| ++|+||||+|||||+++|||...+..+.+..
T Consensus 28 ~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i 78 (377)
T PRK11607 28 SFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78 (377)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 333334566778888776 8899999999999999999988776666544
No 326
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.55 E-value=0.00021 Score=74.28 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=37.0
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
....+.++++.++.| +.|+|+||+|||||+++|+|...+..+.+..
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLL 59 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 334567788888877 8999999999999999999987666665543
No 327
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.55 E-value=0.00016 Score=75.26 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=23.5
Q ss_pred ccccccCCcEEEECCCCCCchhHHHHhhhhh
Q 002754 445 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 475 (884)
Q Consensus 445 ~~g~~i~~giLL~GPpGtGKTtLakaLA~el 475 (884)
++.+....-++|+||||+|||||+|.|++..
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3333333348999999999999999998743
No 328
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.54 E-value=0.00011 Score=75.97 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=36.1
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhh--ccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el--~~~~~~is~ 484 (884)
..+.++++.+..| ++|.||||+|||||+++|+|.. .+..+.+..
T Consensus 23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~ 70 (194)
T cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI 70 (194)
T ss_pred cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence 3567778888877 8899999999999999999988 666665543
No 329
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.54 E-value=5.9e-05 Score=85.66 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=38.2
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccce--eeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNF--FSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~--~~is~ 484 (884)
|.....+.++++.++.| +.|+||||+|||||+++|||...+.. +.+..
T Consensus 15 ~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~ 66 (362)
T TIGR03258 15 YGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAI 66 (362)
T ss_pred ECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEE
Confidence 33334567788888877 88999999999999999999887776 76644
No 330
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.00039 Score=76.36 Aligned_cols=128 Identities=17% Similarity=0.236 Sum_probs=82.4
Q ss_pred ccCCcEEEECCCCCCchhHHHHhhhhhccc-------eeeee-cchh-----hhh-hc---cc--cchhhhhHHHHHHh-
Q 002754 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSIS-ASQF-----VEI-YV---GV--GASRVRSLYQEAKD- 508 (884)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~-------~~~is-~s~~-----~~~-~~---g~--~~~~l~~lf~~a~~- 508 (884)
+++.++||+|| +||+++|+.+|..+-.. -+... |..+ -+. ++ |. ....++.+...+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 56777999996 68999999999855221 11110 0000 000 11 11 11234555444432
Q ss_pred ---cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccC
Q 002754 509 ---NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFI 585 (884)
Q Consensus 509 ---~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~ 585 (884)
....|++||++|.+... ..|.||..++ .+..++++|..|+.++.+.|.+++ |.. .|+|
T Consensus 100 p~~~~~kV~II~~ad~m~~~--------------AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVN--------------AANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS--RTQ-IFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhcCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--cce-eeeC
Confidence 23468999999998655 7899999999 566778899888889999999999 543 7888
Q ss_pred CCCChhhHHHHHH
Q 002754 586 PKPGLIGRMEILK 598 (884)
Q Consensus 586 ~~P~~eeR~~Il~ 598 (884)
++ +.+...+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 66 5555555554
No 331
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.53 E-value=6.2e-05 Score=85.85 Aligned_cols=44 Identities=30% Similarity=0.404 Sum_probs=36.3
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+..| ++|+||||+|||||+++|||...+..+.+..
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~ 73 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIML 73 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 3566777888777 8999999999999999999988777666644
No 332
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.53 E-value=0.00014 Score=86.85 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=43.2
Q ss_pred HHHHHHhhcc-cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 430 LEEIVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 430 l~~lv~~~~~-~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
++++...|.+ ...++++++.+++| +.|+||+|+|||||++.|+|...+..+.+..+
T Consensus 337 ~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 337 LRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred EEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 3444444432 23678899999988 99999999999999999999988777666443
No 333
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.53 E-value=7.9e-05 Score=78.56 Aligned_cols=42 Identities=24% Similarity=0.418 Sum_probs=35.4
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeee
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (884)
..+...++.++.| +.|+||+|||||||+..|++-..+..+.+
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v 62 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV 62 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 3567788889888 88999999999999999999776666554
No 334
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.52 E-value=0.0001 Score=80.22 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=35.6
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeee
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (884)
...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I 81 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 34677888888877 88999999999999999999876555544
No 335
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.00022 Score=76.74 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=78.8
Q ss_pred ccCCcEEEECCCCCCchhHHHHhhhhhccceeeeecch------hh-----hhhc--cc----cchhhhhHHHHHHh---
Q 002754 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ------FV-----EIYV--GV----GASRVRSLYQEAKD--- 508 (884)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~------~~-----~~~~--g~----~~~~l~~lf~~a~~--- 508 (884)
..|..+||+||.|+||..+|.++|..+-..-..-.|+. +. +.++ .. ....++.+.+.+..
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 34567999999999999999999976522110001111 00 0011 00 11223444333321
Q ss_pred --cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCC
Q 002754 509 --NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 586 (884)
Q Consensus 509 --~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~ 586 (884)
....|++|+++|.+... ..|.||..++ .+..++++|..|+.++.+.|.+++ |.. .+.|+
T Consensus 85 e~~~~KV~II~~ae~m~~~--------------AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQ--------------SANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhhCHH--------------HHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 23568999999888655 7899999999 577889999999999999999999 643 45666
Q ss_pred CC
Q 002754 587 KP 588 (884)
Q Consensus 587 ~P 588 (884)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 65
No 336
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.51 E-value=0.0012 Score=76.33 Aligned_cols=30 Identities=37% Similarity=0.640 Sum_probs=27.2
Q ss_pred EEEECCCCCCchhHHHHhhhhhccceeeee
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (884)
+||+||+||||||.++.|+.++|..+.+..
T Consensus 113 LLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred EEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 889999999999999999999998877654
No 337
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.51 E-value=0.00014 Score=87.73 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=39.2
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
...+.++++.+++| ++|+||+|+|||||+++|+|...+..+.+..+
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 403 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLD 403 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEEC
Confidence 34678889999888 99999999999999999999988877766443
No 338
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=3e-05 Score=87.43 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=37.4
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~ 64 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLV 64 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 4677888898888 8899999999999999999988776666644
No 339
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.50 E-value=8.2e-05 Score=82.41 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=39.5
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|++...+.++++.++.| +.|+||||+|||||+++|+|...+..+++..
T Consensus 12 ~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i 61 (301)
T TIGR03522 12 YGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61 (301)
T ss_pred ECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 44445678888888887 8999999999999999999988777776643
No 340
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.49 E-value=0.00015 Score=89.26 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=43.0
Q ss_pred HHHHHHhhc--ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 430 LEEIVKFFT--HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 430 l~~lv~~~~--~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
++++...|. ....++++++.++.| +.|+||+|+|||||++.|+|...+..+.+..
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 512 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 344444452 234688899999888 9999999999999999999988777666643
No 341
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.49 E-value=5.2e-05 Score=91.00 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=42.4
Q ss_pred HHHHHhhc-ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 431 EEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 431 ~~lv~~~~-~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+++...|. ....+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 10 ~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~ 66 (556)
T PRK11819 10 NRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP 66 (556)
T ss_pred eeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 34444454 445788899999988 8899999999999999999988776666643
No 342
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.48 E-value=2.5e-05 Score=82.02 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=38.2
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
...+.++++.++.| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 63 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV 63 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence 34678888888887 8899999999999999999998777776654
No 343
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.46 E-value=0.0003 Score=88.30 Aligned_cols=133 Identities=26% Similarity=0.366 Sum_probs=91.9
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhh--hcccc-----chhh---hhHHHHHHhcCCcEEEhhhHHH
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVG-----ASRV---RSLYQEAKDNAPSVVFIDELDA 521 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~--~~g~~-----~~~l---~~lf~~a~~~~p~Il~iDEId~ 521 (884)
++++|-|.||+|||+|+-+||+..|...++|+.++..+. .+|.. .+.+ ..-|-.+.+. ..-+++||+.-
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhhh
Confidence 559999999999999999999999999999999875443 22221 1111 1223333333 24689999965
Q ss_pred hhhhcCCCCCCCchhHHHHHHHHHHhhcc------------ccCCCceEEEeccCCCC------CCCccCCCCCcccccc
Q 002754 522 VGRERGLIKGSGGQERDATLNQLLVCLDG------------FEGRGNVITIASTNRPD------ILDPALVRPGRFDRKI 583 (884)
Q Consensus 522 l~~~r~~~~~Sgge~~~~~l~~LL~~ld~------------~~~~~~VlVIatTN~~~------~LdpaLlr~gRfd~~I 583 (884)
.... ++..|=.++|. +.-..++.|.+|-|+-+ .+|..+++ ||. +|
T Consensus 1623 aSQS--------------VlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV 1685 (4600)
T COG5271 1623 ASQS--------------VLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VV 1685 (4600)
T ss_pred hHHH--------------HHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eE
Confidence 4322 55444444443 22246788888888654 58999999 997 88
Q ss_pred cCCCCChhhHHHHHHHHHc
Q 002754 584 FIPKPGLIGRMEILKVHAR 602 (884)
Q Consensus 584 ~~~~P~~eeR~~Il~~~l~ 602 (884)
++..++.+....|......
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred EecccccchHHHHHHhhCC
Confidence 8888888888888776553
No 344
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.46 E-value=0.00015 Score=87.54 Aligned_cols=45 Identities=31% Similarity=0.399 Sum_probs=38.1
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
...+.++++.+++| ++|+||+|+|||||++.|++.. +..+.+..+
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~ 409 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKIN 409 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEEC
Confidence 34678889999888 9999999999999999999988 666666443
No 345
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00011 Score=76.49 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=35.9
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhc---cceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG---VNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~---~~~~~is~ 484 (884)
..+.++++.++.| ++|+||||+|||||++.|+|... +..+.+..
T Consensus 21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i 69 (202)
T cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY 69 (202)
T ss_pred eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEE
Confidence 4567788888877 88999999999999999999876 55665544
No 346
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00014 Score=77.35 Aligned_cols=45 Identities=29% Similarity=0.279 Sum_probs=37.2
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
...+.++++.+..| ++|+||||+|||||+++|+|...+.-+.+..
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~ 59 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 34677888888877 9999999999999999999988776665543
No 347
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=8.8e-05 Score=81.38 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=33.0
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccce
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNF 479 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~ 479 (884)
.+.++++.++.| +.|+||||+|||||+++|+|.+.+..
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~ 61 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCC
Confidence 677788888887 89999999999999999999876543
No 348
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.0004 Score=80.39 Aligned_cols=119 Identities=18% Similarity=0.273 Sum_probs=71.9
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceee--eecchhhhh----------hccccchhh-hhHHHH
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQFVEI----------YVGVGASRV-RSLYQE 505 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~--is~s~~~~~----------~~g~~~~~l-~~lf~~ 505 (884)
..++..++.+|.| +.|+|+||+||||++|+|.+... ..++ +++-++.+. |+.|....+ ..++.+
T Consensus 366 ~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~N 444 (591)
T KOG0057|consen 366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYN 444 (591)
T ss_pred ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHH
Confidence 3778899999998 99999999999999999998775 4333 343333222 333332222 345555
Q ss_pred HHhcCCcEEEhhhHHHhhhhc-----------CC--------CCCCCchhHHHHHHHHHHhhccccCCCceEEE-eccCC
Q 002754 506 AKDNAPSVVFIDELDAVGRER-----------GL--------IKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNR 565 (884)
Q Consensus 506 a~~~~p~Il~iDEId~l~~~r-----------~~--------~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVI-atTN~ 565 (884)
..-.+|+ .-.+|+-..+... +. -.-|||++.+..+...+ .++..++++ .+|..
T Consensus 445 I~YGn~s-as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~------lKda~Il~~DEaTS~ 517 (591)
T KOG0057|consen 445 IKYGNPS-ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF------LKDAPILLLDEATSA 517 (591)
T ss_pred hhcCCCC-cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH------hcCCCeEEecCcccc
Confidence 5555554 2334443322211 00 01199999998887666 455666666 45544
Q ss_pred CC
Q 002754 566 PD 567 (884)
Q Consensus 566 ~~ 567 (884)
.|
T Consensus 518 LD 519 (591)
T KOG0057|consen 518 LD 519 (591)
T ss_pred cc
Confidence 33
No 349
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00037 Score=73.69 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=36.1
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+.++++.++.| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 567788888887 8899999999999999999988766665543
No 350
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00017 Score=83.22 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhcccc--cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecch
Q 002754 427 RLELEEIVKFFTHGE--MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (884)
Q Consensus 427 ~~~l~~lv~~~~~~~--~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 486 (884)
..+++++...|.+.. .++++++.+..| +.|+|++||||||+++.|++...+..+++..+.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 677888888887654 789999999988 999999999999999999999888877776554
No 351
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.43 E-value=0.00023 Score=88.02 Aligned_cols=56 Identities=27% Similarity=0.263 Sum_probs=43.6
Q ss_pred HHHHHHHhhcc--cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 429 ELEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 429 ~l~~lv~~~~~--~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+++++...|.. ...++++++.++.| +.|+||+|+|||||++.|+|...+..+.+..
T Consensus 479 ~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 479 ELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred EEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 34444444542 34688899999888 9999999999999999999998877666644
No 352
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.41 E-value=4.8e-05 Score=79.59 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=39.9
Q ss_pred HhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 435 ~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..|.....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 7 ~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 58 (213)
T cd03235 7 VSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58 (213)
T ss_pred eEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 3344444678888888877 8999999999999999999988776666654
No 353
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.40 E-value=4.8e-05 Score=79.06 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=39.3
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+.+...+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 58 (206)
T TIGR03608 8 FGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58 (206)
T ss_pred ECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 33344677888888877 89999999999999999999887777766543
No 354
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.40 E-value=0.00037 Score=72.63 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=60.6
Q ss_pred ccCCc--EEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh--------h----ccc-------c----chhhh
Q 002754 449 RIPGG--ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI--------Y----VGV-------G----ASRVR 500 (884)
Q Consensus 449 ~i~~g--iLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~--------~----~g~-------~----~~~l~ 500 (884)
-+|.| ++|+||||+|||+|+..++... +...+.++..++... + .+. . ...+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 34444 8999999999999998887543 556677766542110 0 000 0 00122
Q ss_pred hHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccC
Q 002754 501 SLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 564 (884)
Q Consensus 501 ~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN 564 (884)
.+...+....+++++||-+..+..... . +........+..++..|..+....++.+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~--~-~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLEL--S-DDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHh--C-CccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 223334445789999999988753211 1 111112223333444444444456666666643
No 355
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.39 E-value=0.00018 Score=74.80 Aligned_cols=44 Identities=34% Similarity=0.457 Sum_probs=34.8
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhh--ccceeeee
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSIS 483 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el--~~~~~~is 483 (884)
...+.++++.+..| ++|+||||+|||||+++|+|.. .+..+.+.
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~ 60 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL 60 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEE
Confidence 34677888888877 8999999999999999999983 44455443
No 356
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.39 E-value=0.00025 Score=84.01 Aligned_cols=116 Identities=22% Similarity=0.217 Sum_probs=66.4
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecchhh-------hhhccccchhhhhHHHHHHhcCC
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-------EIYVGVGASRVRSLYQEAKDNAP 511 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~-------~~~~g~~~~~l~~lf~~a~~~~p 511 (884)
.+.+.+++.++.| +++.||+|||||+|.|+|||--..-.+.+.+..-. ..|+..+ .+++..-......
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~G--tLre~l~YP~~~~- 483 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQG--TLREALCYPNAAP- 483 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCc--cHHHHHhCCCCCC-
Confidence 4566777888777 99999999999999999999765544555554211 1133222 2222221111110
Q ss_pred cEEEhhhHHHhhhh---------cCCCC-----CCCchhHHHHHHHHHHhhccccCCCceEEE-eccCCC
Q 002754 512 SVVFIDELDAVGRE---------RGLIK-----GSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRP 566 (884)
Q Consensus 512 ~Il~iDEId~l~~~---------r~~~~-----~Sgge~~~~~l~~LL~~ld~~~~~~~VlVI-atTN~~ 566 (884)
. +--+|+-..+.. ..... =|+|++.+..++.++ ...+.++|+ .+|+..
T Consensus 484 ~-~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil------L~kP~~v~LDEATsAL 546 (604)
T COG4178 484 D-FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL------LHKPKWVFLDEATSAL 546 (604)
T ss_pred C-CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH------HcCCCEEEEecchhcc
Confidence 0 111122111111 00001 189999999999998 556777888 666543
No 357
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00012 Score=80.16 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=36.5
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~ 66 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV 66 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 567788888887 8899999999999999999998777666543
No 358
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.38 E-value=0.00013 Score=77.19 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 428 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 428 ~~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+.+..+...|.....+.++++.+..| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 82 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR 82 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 55667777788878899999999887 88999999999999999999887777766543
No 359
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=3.3e-05 Score=82.19 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=39.4
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.....+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (235)
T cd03261 10 FGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59 (235)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33334677888888887 8999999999999999999988777777654
No 360
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.38 E-value=0.00014 Score=67.89 Aligned_cols=25 Identities=44% Similarity=0.752 Sum_probs=21.6
Q ss_pred EEEECCCCCCchhHHHHhhhhhccc
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAGVN 478 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~ 478 (884)
|.|+||||+|||+|++.|+..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999876543
No 361
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00014 Score=79.40 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=37.0
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 64 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV 64 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE
Confidence 3567788888887 8999999999999999999988777666644
No 362
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=0.00015 Score=79.05 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=46.1
Q ss_pred HHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 430 l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..++...++....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i 83 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI 83 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 356677777777889999999888 8899999999999999999988776666644
No 363
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00013 Score=79.80 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=36.1
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII 66 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 567788888877 8999999999999999999988766665543
No 364
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.37 E-value=0.00015 Score=82.07 Aligned_cols=45 Identities=31% Similarity=0.451 Sum_probs=37.2
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
...+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i 61 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 34567788888877 8999999999999999999988776666644
No 365
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=4.7e-05 Score=80.86 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=37.5
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 64 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLV 64 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 4677888888877 8999999999999999999998776666654
No 366
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.36 E-value=0.0035 Score=71.70 Aligned_cols=226 Identities=20% Similarity=0.240 Sum_probs=125.9
Q ss_pred ccccCchhHHHHHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhcccc
Q 002754 418 SDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG 495 (884)
Q Consensus 418 ~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~ 495 (884)
+.+.|..+++..+.-+. ++.+.....-|.++.+. |||.|.||+.||-|++.|..-.....++.--+. ..+|-+
T Consensus 342 PEIyGheDVKKaLLLlL--VGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLT 416 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLL--VGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLT 416 (721)
T ss_pred hhhccchHHHHHHHHHh--hCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccc
Confidence 34556667765543332 23333334457777664 999999999999999999876544333321111 112222
Q ss_pred chhhhhH-HHHH-------HhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhc------ccc--CCCceEE
Q 002754 496 ASRVRSL-YQEA-------KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD------GFE--GRGNVIT 559 (884)
Q Consensus 496 ~~~l~~l-f~~a-------~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld------~~~--~~~~VlV 559 (884)
..-++.- ...+ --...+|-.|||+|++... .|..+...+.+-. |+. -+..+-|
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-----------DRtAIHEVMEQQTISIaKAGI~TtLNAR~sI 485 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-----------DRTAIHEVMEQQTISIAKAGINTTLNARTSI 485 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-----------hhHHHHHHHHhhhhhhhhhccccchhhhHHh
Confidence 1111100 0000 0112357899999998543 1224444432211 111 1344668
Q ss_pred EeccCCCC-------------CCCccCCCCCcccccccC-CCCChhhHHHHHHH----HHccCCCCCc---ccHH-----
Q 002754 560 IASTNRPD-------------ILDPALVRPGRFDRKIFI-PKPGLIGRMEILKV----HARKKPMADD---VDYL----- 613 (884)
Q Consensus 560 IatTN~~~-------------~LdpaLlr~gRfd~~I~~-~~P~~eeR~~Il~~----~l~~~~~~~d---idl~----- 613 (884)
+++.|... .||++|++ |||...-+ ..|+.+.-..+.++ |....+-..+ ++..
T Consensus 486 LaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~y 563 (721)
T KOG0482|consen 486 LAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRY 563 (721)
T ss_pred hhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHH
Confidence 88888653 47899999 99976544 35666554444432 2222111100 1110
Q ss_pred -----------------HH----------H--hhCC-CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 002754 614 -----------------AV----------A--SMTD-GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 661 (884)
Q Consensus 614 -----------------~l----------A--~~t~-G~s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~~~~~g 661 (884)
.+ + .... -.|++.|-.+++.+...|..+-...|..+|+.+|+......
T Consensus 564 I~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~s 641 (721)
T KOG0482|consen 564 ISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMS 641 (721)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhh
Confidence 01 0 0011 24688888888888888888888889999999999877654
No 367
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00029 Score=72.05 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=49.5
Q ss_pred HHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecch
Q 002754 429 ELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (884)
Q Consensus 429 ~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~ 486 (884)
.++++.+.|+......+.++.+|.| -.|.||||+|||||+..++.-++...+.+....
T Consensus 3 ~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g 62 (252)
T COG4604 3 TIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG 62 (252)
T ss_pred eehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEee
Confidence 4577888899888999999999987 679999999999999999998888777765543
No 368
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.35 E-value=5.3e-05 Score=80.87 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=37.8
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence 344677888888887 8899999999999999999988766666543
No 369
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.35 E-value=0.00041 Score=74.68 Aligned_cols=32 Identities=34% Similarity=0.424 Sum_probs=27.9
Q ss_pred EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+.|+||||+|||||+++|+|...+..+.+...
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~ 59 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE 59 (246)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCCeEEEC
Confidence 88999999999999999999887777766544
No 370
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.35 E-value=0.0001 Score=88.42 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=41.1
Q ss_pred HHHHhhc-ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 432 EIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 432 ~lv~~~~-~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
++...|. ....+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 9 nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~ 64 (552)
T TIGR03719 9 RVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP 64 (552)
T ss_pred eEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 3333444 345778889999988 8899999999999999999988666665543
No 371
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=9.8e-05 Score=76.24 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=30.0
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhh
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el 475 (884)
..+.++++.+..| ++|+||||+|||||+++|+|..
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567778888777 8899999999999999999853
No 372
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00013 Score=80.31 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=36.9
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV 65 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 567788888887 9999999999999999999988777766644
No 373
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.34 E-value=6.5e-05 Score=79.52 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=41.3
Q ss_pred HHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 433 lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+...+.....+.++++.++.| ++|+||||+|||||+++|+|...+..+.+...
T Consensus 13 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 67 (225)
T PRK10247 13 VGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFE 67 (225)
T ss_pred cEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEEC
Confidence 333344445678888888887 89999999999999999999877766666543
No 374
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.34 E-value=5.9e-05 Score=89.81 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=37.4
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhh--ccceeeee
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSIS 483 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el--~~~~~~is 483 (884)
|.....+.++++.+..| ++|+||||+|||||+++|+|.. .+..+.+.
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~ 60 (520)
T TIGR03269 10 FDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60 (520)
T ss_pred ECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEE
Confidence 44445677888888887 8999999999999999999986 45555554
No 375
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00013 Score=79.66 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=36.0
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeee
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (884)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 60 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 3577888888887 899999999999999999998766656553
No 376
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.33 E-value=5.1e-05 Score=80.69 Aligned_cols=48 Identities=25% Similarity=0.191 Sum_probs=38.7
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.....+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (236)
T cd03219 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF 59 (236)
T ss_pred ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 33344677888888877 8899999999999999999988776666654
No 377
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.33 E-value=0.00031 Score=84.47 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=37.8
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
..+.++++.+++| ++|+|++|+|||||+++|+|...+..+.+...
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~ 392 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD 392 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence 3577888888877 99999999999999999999987776666443
No 378
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.32 E-value=0.00032 Score=76.44 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=43.3
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhccceeeeecc-----------hhhhh--hcccc-----------chhhhhHHHHHH
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS-----------QFVEI--YVGVG-----------ASRVRSLYQEAK 507 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s-----------~~~~~--~~g~~-----------~~~l~~lf~~a~ 507 (884)
.+++|+||||+|||||+++|++.+.+..+.+... ++... ++.+. ......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 4689999999999999999999886544332211 11111 11111 011123555667
Q ss_pred hcCCcEEEhhhH
Q 002754 508 DNAPSVVFIDEL 519 (884)
Q Consensus 508 ~~~p~Il~iDEI 519 (884)
.+.|.++++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 788999999996
No 379
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00014 Score=80.78 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=36.7
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+.+
T Consensus 22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~ 66 (305)
T PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66 (305)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 567788888877 9999999999999999999988776666544
No 380
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.31 E-value=0.00029 Score=76.94 Aligned_cols=142 Identities=25% Similarity=0.365 Sum_probs=72.0
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhccc---eeeeecchhhhhh-c-cccchhh----hhHHHHHHhcCCcEEEhhhHHHh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISASQFVEIY-V-GVGASRV----RSLYQEAKDNAPSVVFIDELDAV 522 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~---~~~is~s~~~~~~-~-g~~~~~l----~~lf~~a~~~~p~Il~iDEId~l 522 (884)
..++|+||+|||||++++.+...+... ...++++...... + ...+..+ +..+.- ......|+|+|++.--
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP-~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP-PGGKKLVLFIDDLNMP 112 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE-ESSSEEEEEEETTT-S
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC-CCCcEEEEEecccCCC
Confidence 348999999999999998887665432 2234444322110 0 0000000 001100 1122358999999654
Q ss_pred hhhcCCCCCCCchhHHHHHHHHHHhhccccCC--------CceEEEeccCCCC---CCCccCCCCCcccccccCCCCChh
Q 002754 523 GRERGLIKGSGGQERDATLNQLLVCLDGFEGR--------GNVITIASTNRPD---ILDPALVRPGRFDRKIFIPKPGLI 591 (884)
Q Consensus 523 ~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~--------~~VlVIatTN~~~---~LdpaLlr~gRfd~~I~~~~P~~e 591 (884)
..+. -|.+.....+.+++.. .++.+. .++.+|++.|... .+++.|+| .|. ++.++.|+.+
T Consensus 113 ~~d~-----ygtq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~~~p~~~ 183 (272)
T PF12775_consen 113 QPDK-----YGTQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNIPYPSDE 183 (272)
T ss_dssp ---T-----TS--HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE----TCC
T ss_pred CCCC-----CCCcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEecCCChH
Confidence 3331 1222222333333321 122222 3578888877543 36667776 554 7889999999
Q ss_pred hHHHHHHHHHcc
Q 002754 592 GRMEILKVHARK 603 (884)
Q Consensus 592 eR~~Il~~~l~~ 603 (884)
....|+...+..
T Consensus 184 sl~~If~~il~~ 195 (272)
T PF12775_consen 184 SLNTIFSSILQS 195 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999988876653
No 381
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00011 Score=77.09 Aligned_cols=55 Identities=20% Similarity=0.348 Sum_probs=43.8
Q ss_pred HHHHHhh-cccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 431 EEIVKFF-THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 431 ~~lv~~~-~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+++.+.| +....+.+.++.++.| +.|+||+|+|||||+|+|.+..++..+++-..
T Consensus 7 ~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~ 64 (258)
T COG3638 7 KNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFN 64 (258)
T ss_pred eeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEec
Confidence 4445555 5566778889999988 99999999999999999999877777666443
No 382
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.30 E-value=4.9e-05 Score=79.93 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=38.5
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (222)
T cd03224 10 YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59 (222)
T ss_pred cCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 33334677788888877 8999999999999999999988776666654
No 383
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=4.8e-05 Score=80.07 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=37.2
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 63 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV 63 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 4677888888877 8899999999999999999988776666654
No 384
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.30 E-value=4.6e-05 Score=80.46 Aligned_cols=44 Identities=30% Similarity=0.299 Sum_probs=37.6
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.++.| ++|+||||+|||||+++|+|...+..+++..
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 64 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIF 64 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 4677888888887 9999999999999999999988777776654
No 385
>PRK13409 putative ATPase RIL; Provisional
Probab=97.30 E-value=0.0004 Score=83.86 Aligned_cols=42 Identities=33% Similarity=0.430 Sum_probs=34.7
Q ss_pred ccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 443 ~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+...++.+..| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~ 398 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP 398 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 55667777777 8899999999999999999988777666654
No 386
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.30 E-value=0.00039 Score=85.76 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=42.4
Q ss_pred HHHHHhhcc--cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 431 EEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 431 ~~lv~~~~~--~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+++...|.. ...+.++++.++.| +.|+||+|+|||||++.|+|...+..+.+...
T Consensus 467 ~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 525 (694)
T TIGR03375 467 RNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525 (694)
T ss_pred EEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 344444432 34678899999888 99999999999999999999887777665443
No 387
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.29 E-value=4.4e-05 Score=80.87 Aligned_cols=49 Identities=31% Similarity=0.431 Sum_probs=39.6
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+++...
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (230)
T TIGR03410 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60 (230)
T ss_pred eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 33334667788888877 99999999999999999999987777776553
No 388
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=6.2e-05 Score=80.34 Aligned_cols=49 Identities=31% Similarity=0.399 Sum_probs=39.4
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+...
T Consensus 12 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 62 (239)
T cd03296 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62 (239)
T ss_pred ECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 33444677888888877 88999999999999999999887776766543
No 389
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.28 E-value=5.5e-05 Score=79.52 Aligned_cols=45 Identities=22% Similarity=0.167 Sum_probs=37.6
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 34677888888877 8899999999999999999988777666654
No 390
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.28 E-value=0.0003 Score=73.76 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=33.1
Q ss_pred cccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 444 ~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.++++.+..| ++|.||||+|||||+++|+|...+..+++..
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 57 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 4566777666 9999999999999999999988766665543
No 391
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.27 E-value=0.00018 Score=74.02 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=37.1
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
...+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 51 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI 51 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE
Confidence 34567788888877 8899999999999999999988776666644
No 392
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.27 E-value=0.0002 Score=80.80 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=37.3
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.++.| +.|+||||+|||||+++|++...+..+.+..
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i 64 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIV 64 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 3577888888887 8899999999999999999988777776644
No 393
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.27 E-value=7.5e-05 Score=78.15 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=37.0
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+..| ++|+||||+|||||+++|+|...+..+++..
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 61 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 4567788888877 8899999999999999999988776666654
No 394
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=5.9e-05 Score=80.35 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=37.3
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 60 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 34677888888887 8999999999999999999988766666543
No 395
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.26 E-value=0.00017 Score=68.07 Aligned_cols=30 Identities=43% Similarity=0.793 Sum_probs=25.8
Q ss_pred EEEECCCCCCchhHHHHhhhhhccceeeee
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (884)
|+|.||||+||||+++.||..++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 689999999999999999999887665443
No 396
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.26 E-value=0.0002 Score=78.59 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=37.0
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i 65 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEE
Confidence 4677888888887 8999999999999999999988776666544
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00035 Score=80.20 Aligned_cols=128 Identities=20% Similarity=0.268 Sum_probs=68.6
Q ss_pred HHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeee--c-chhhhhh---ccccchhhhhHH
Q 002754 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS--A-SQFVEIY---VGVGASRVRSLY 503 (884)
Q Consensus 432 ~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is--~-s~~~~~~---~g~~~~~l~~lf 503 (884)
++..+|+...++...++.+.+| ..|+|+||+|||||+|+||.. ....+.+. + +...... .........-+.
T Consensus 85 ~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~ 163 (582)
T KOG0062|consen 85 NFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-QVSGFHVEQEVRGDDTEALQSVLESDTERLDFLA 163 (582)
T ss_pred eeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-CcCccCchhheeccchHHHhhhhhccHHHHHHHH
Confidence 3344566666777777777766 999999999999999999981 11111110 0 0000000 000001011111
Q ss_pred HHHHhcCCcEEEhhhHHH-hhhhcCCCC---------CCCchhHHHHHHHHHHhhccccCCCceEEE-eccCCCCC
Q 002754 504 QEAKDNAPSVVFIDELDA-VGRERGLIK---------GSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 568 (884)
Q Consensus 504 ~~a~~~~p~Il~iDEId~-l~~~r~~~~---------~Sgge~~~~~l~~LL~~ld~~~~~~~VlVI-atTN~~~~ 568 (884)
+... - ..-+-++||-. ++...++.. -|||-+.+..++..+ .....++++ .+||++|.
T Consensus 164 ~e~~-l-~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAl------f~~pDlLLLDEPTNhLDv 231 (582)
T KOG0062|consen 164 EEKE-L-LAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARAL------FAKPDLLLLDEPTNHLDV 231 (582)
T ss_pred hhhh-h-hccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHH------hcCCCEEeecCCcccchh
Confidence 1100 0 00113455544 333333222 289999999988877 445667777 89998875
No 398
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.25 E-value=6.1e-05 Score=79.66 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=37.5
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhh-----ccceeeeec
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISA 484 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el-----~~~~~~is~ 484 (884)
....+.++++.+..| +.|+||||+|||||+++|+|.. .+..+.+..
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 64 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEE
Confidence 334677888888877 8899999999999999999988 666666644
No 399
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.25 E-value=8.5e-05 Score=79.33 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=39.1
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.....+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 13 ~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (241)
T PRK10895 13 YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII 62 (241)
T ss_pred eCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 33344677888888877 8999999999999999999988776666654
No 400
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.24 E-value=0.0016 Score=84.89 Aligned_cols=176 Identities=20% Similarity=0.225 Sum_probs=92.2
Q ss_pred cccccccCchhHHHHHHHHHHhhcccccccccccccCCcEEEECCCCCCchhHHHHhhhhhccce---eeeecc---hhh
Q 002754 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF---FSISAS---QFV 488 (884)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~g~~i~~giLL~GPpGtGKTtLakaLA~el~~~~---~~is~s---~~~ 488 (884)
..+++..|.+..+.++..++.. +....+-+.|+|++|+||||||+++++.+...| +.++.. ...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~ 250 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM 250 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch
Confidence 3466777888777666654421 111122388999999999999999988764432 111110 000
Q ss_pred hhh----------------------ccccchhhh--hHHHHHHhcCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHH
Q 002754 489 EIY----------------------VGVGASRVR--SLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQL 544 (884)
Q Consensus 489 ~~~----------------------~g~~~~~l~--~lf~~a~~~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~L 544 (884)
..+ .+.....+. ..........+.++++|+++... .+..+
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~----------------~l~~L 314 (1153)
T PLN03210 251 EIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQD----------------VLDAL 314 (1153)
T ss_pred hhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHH----------------HHHHH
Confidence 000 000000000 11112223445678889875421 33333
Q ss_pred HHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCChhhHHHHHHHHHccCCCCCccc----HHHHHhhCC
Q 002754 545 LVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD----YLAVASMTD 620 (884)
Q Consensus 545 L~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~~~~~~~did----l~~lA~~t~ 620 (884)
....+.+ ..+..||.||..... ++....++++.++.|+.++-.++|..++-...... .+ ...++..+.
T Consensus 315 ~~~~~~~--~~GsrIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~c~ 386 (1153)
T PLN03210 315 AGQTQWF--GSGSRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALRAG 386 (1153)
T ss_pred HhhCccC--CCCcEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhC
Confidence 3322222 233445556654332 22234667889999999999999998875432222 12 234566666
Q ss_pred CCCH
Q 002754 621 GMVG 624 (884)
Q Consensus 621 G~s~ 624 (884)
|..-
T Consensus 387 GLPL 390 (1153)
T PLN03210 387 NLPL 390 (1153)
T ss_pred CCcH
Confidence 6553
No 401
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.00036 Score=72.21 Aligned_cols=47 Identities=21% Similarity=0.480 Sum_probs=39.1
Q ss_pred HHHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhh
Q 002754 428 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGE 474 (884)
Q Consensus 428 ~~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~e 474 (884)
..++++..+|+....+.+.++.+|.+ ..|.||+|||||||+|++-.-
T Consensus 8 ~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred eEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhh
Confidence 44456666777778888999999987 789999999999999999763
No 402
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.24 E-value=0.00015 Score=70.16 Aligned_cols=42 Identities=33% Similarity=0.444 Sum_probs=33.8
Q ss_pred cccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 444 ~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+++++.++.| ++|+|+||+|||||+++|++...+..+.+...
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~ 45 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILIN 45 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEET
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccc
Confidence 3456666666 89999999999999999999987777766443
No 403
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.24 E-value=0.00044 Score=75.34 Aligned_cols=148 Identities=19% Similarity=0.213 Sum_probs=75.8
Q ss_pred EEEECCCCCCchhHHHHhhhh--hccce---eeeecchhhh------h---hcccc---------chhhhhHHHHHHhcC
Q 002754 454 ILLCGPPGVGKTLLAKAVAGE--AGVNF---FSISASQFVE------I---YVGVG---------ASRVRSLYQEAKDNA 510 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e--l~~~~---~~is~s~~~~------~---~~g~~---------~~~l~~lf~~a~~~~ 510 (884)
++|+|++|+|||+||..++.. ....| +.++.+.... . .++.. .......+.......
T Consensus 22 v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 101 (287)
T PF00931_consen 22 VAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDK 101 (287)
T ss_dssp EEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCT
T ss_pred EEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccc
Confidence 899999999999999999987 33332 2223222110 0 11111 111122223333445
Q ss_pred CcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCCCh
Q 002754 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGL 590 (884)
Q Consensus 511 p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P~~ 590 (884)
++++++|+++... .+..+...+... ..+.-||.||....... .+- .-...+.++..+.
T Consensus 102 ~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR~~~v~~-~~~---~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 102 RCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTRDRSVAG-SLG---GTDKVIELEPLSE 159 (287)
T ss_dssp SEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEESCGGGGT-THH---SCEEEEECSS--H
T ss_pred cceeeeeeecccc----------------cccccccccccc--ccccccccccccccccc-ccc---ccccccccccccc
Confidence 8899999986542 222233222211 23445666665433211 111 1145789999999
Q ss_pred hhHHHHHHHHHccCC----CCCcccHHHHHhhCCCCC
Q 002754 591 IGRMEILKVHARKKP----MADDVDYLAVASMTDGMV 623 (884)
Q Consensus 591 eeR~~Il~~~l~~~~----~~~didl~~lA~~t~G~s 623 (884)
++-.++|........ .........++..+.|..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 196 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLP 196 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-H
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 999999998875443 111223567888887643
No 404
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.24 E-value=0.0015 Score=71.95 Aligned_cols=178 Identities=20% Similarity=0.280 Sum_probs=100.3
Q ss_pred EEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh-----hccccc--hhhhhHHHHHHhcCCcEEEhhhHHHhh
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGA--SRVRSLYQEAKDNAPSVVFIDELDAVG 523 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~-----~~g~~~--~~l~~lf~~a~~~~p~Il~iDEId~l~ 523 (884)
+||.|.+||||-.+||+.-... ..||+.++|..+-+. .+|... +.-..+|+.+.. +-+|+|||..+.
T Consensus 230 LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmS 306 (511)
T COG3283 230 LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMS 306 (511)
T ss_pred eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcC
Confidence 7999999999999999876533 578999999876543 344433 223457777643 479999998776
Q ss_pred hhcCCCCCCCchhHHHHHHHHHHhhcc-ccC--------CCceEEEeccCCC--CCCCccCCCCC---cccccccCCCCC
Q 002754 524 RERGLIKGSGGQERDATLNQLLVCLDG-FEG--------RGNVITIASTNRP--DILDPALVRPG---RFDRKIFIPKPG 589 (884)
Q Consensus 524 ~~r~~~~~Sgge~~~~~l~~LL~~ld~-~~~--------~~~VlVIatTN~~--~~LdpaLlr~g---Rfd~~I~~~~P~ 589 (884)
+. ....||..+.+ ... ..+|-||++|..+ +.....-.|.. |+. ++.+..|.
T Consensus 307 p~--------------lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~Pp 371 (511)
T COG3283 307 PR--------------LQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPP 371 (511)
T ss_pred HH--------------HHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCc
Confidence 54 56677766653 111 1358999999553 22222222111 332 45555666
Q ss_pred hhhHHH--------HHHHHHccCCCC-CcccHHHHHhhCCC---CCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 002754 590 LIGRME--------ILKVHARKKPMA-DDVDYLAVASMTDG---MVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (884)
Q Consensus 590 ~eeR~~--------Il~~~l~~~~~~-~didl~~lA~~t~G---~s~adL~~Lv~~A~~~A~~~~~~~It~edi~ 652 (884)
..+|.. .++.+..+.+.. +..+-..+-..+.. -+-++|.+++-+|+... ....++.++|.
T Consensus 372 LRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~---Eg~~l~i~~i~ 443 (511)
T COG3283 372 LRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLL---EGYELRIEDIL 443 (511)
T ss_pred cccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHh---ccCccchhhcc
Confidence 665543 222333333322 22332333333322 23456666666665332 23356666654
No 405
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.24 E-value=0.00047 Score=85.27 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=43.0
Q ss_pred HHHHHHhhc-ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 430 LEEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 430 l~~lv~~~~-~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
++++...|. +...++++++.+++| +.|+||+|+|||||++.|+|...+.-+.+...
T Consensus 476 ~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~id 534 (708)
T TIGR01193 476 INDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLN 534 (708)
T ss_pred EEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEC
Confidence 344444443 235678889999887 99999999999999999999887776666443
No 406
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.23 E-value=0.0005 Score=85.08 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=42.5
Q ss_pred HHHHHHhhcc---cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 430 LEEIVKFFTH---GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 430 l~~lv~~~~~---~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
++++...|.+ ...++++++.+++| +.|+||+|+|||||++.|+|...+..+.+..
T Consensus 481 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred EEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 3444444432 24678899999988 9999999999999999999998877666543
No 407
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00037 Score=74.88 Aligned_cols=82 Identities=21% Similarity=0.127 Sum_probs=56.2
Q ss_pred ccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecchh----------hhh-----------------hcc
Q 002754 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF----------VEI-----------------YVG 493 (884)
Q Consensus 443 ~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~----------~~~-----------------~~g 493 (884)
..+.++.+..| +.|+|.+||||||++|.|.+-..+..+.|..... .+. |..
T Consensus 29 vd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPh 108 (268)
T COG4608 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPH 108 (268)
T ss_pred ecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCc
Confidence 35567788877 8899999999999999999998888777754421 010 111
Q ss_pred ccchh--hhhHHHHHHhcCCcEEEhhhHHHhhh
Q 002754 494 VGASR--VRSLYQEAKDNAPSVVFIDELDAVGR 524 (884)
Q Consensus 494 ~~~~~--l~~lf~~a~~~~p~Il~iDEId~l~~ 524 (884)
+..+. -+-.+..+....|.+++.||.-+.+.
T Consensus 109 elSGGQrQRi~IARALal~P~liV~DEpvSaLD 141 (268)
T COG4608 109 ELSGGQRQRIGIARALALNPKLIVADEPVSALD 141 (268)
T ss_pred ccCchhhhhHHHHHHHhhCCcEEEecCchhhcc
Confidence 11111 12345556677899999999977654
No 408
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.23 E-value=0.00046 Score=73.53 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=49.2
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHhhh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGR 524 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l~~ 524 (884)
.|..+.||.|||||..+|.||..+|.+++.++|++.++. ..+.++|.-+... .+-+++||++.+..
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRLSE 98 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCSSH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-CchhhhhhhhhhhH
Confidence 346789999999999999999999999999999985543 3356666665554 45789999987643
No 409
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.22 E-value=8.9e-05 Score=78.98 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=39.0
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 60 (236)
T TIGR03864 11 YGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV 60 (236)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 33344677888888877 8899999999999999999988777776654
No 410
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.22 E-value=0.00071 Score=81.65 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=42.9
Q ss_pred HHHHHHhhcc--cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 430 LEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 430 l~~lv~~~~~--~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
++++...|.+ ...+.++++.++.| ++|+||+|+|||||++.|+|...+..+.+..+
T Consensus 341 ~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 341 LNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred EEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 3444444432 23678889999887 99999999999999999999988777766543
No 411
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.21 E-value=0.0001 Score=79.08 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=39.0
Q ss_pred hhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 436 ~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.|.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 12 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (250)
T PRK11264 12 KFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV 62 (250)
T ss_pred EECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 343444677888888877 8899999999999999999988766666644
No 412
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.00023 Score=74.90 Aligned_cols=48 Identities=25% Similarity=0.236 Sum_probs=38.5
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.....+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 59 (220)
T cd03265 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV 59 (220)
T ss_pred ECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33344667788888777 8899999999999999999988777776654
No 413
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.21 E-value=0.00022 Score=74.49 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=37.1
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 34567778888777 8999999999999999999988776666654
No 414
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.20 E-value=0.00048 Score=83.30 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=37.0
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeee
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (884)
..+.++++.+++| ++|+|++|+|||||++.|+|...+.-+.+.
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 4678888999888 999999999999999999998877665553
No 415
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.20 E-value=9.3e-05 Score=79.61 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=38.0
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+.+.
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYI 63 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe
Confidence 34567788888877 89999999999999999999887777766543
No 416
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.00072 Score=74.77 Aligned_cols=125 Identities=13% Similarity=0.097 Sum_probs=85.0
Q ss_pred ccCCcEEEECCCCCCchhHHHHhhhhhcc-------------ceeeeecchhhhhhcccc--chhhhhHHHHHHh-----
Q 002754 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGV-------------NFFSISASQFVEIYVGVG--ASRVRSLYQEAKD----- 508 (884)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~-------------~~~~is~s~~~~~~~g~~--~~~l~~lf~~a~~----- 508 (884)
+++...||+|+.|.||+++++.++..+-+ .+..++. .|.. ...++.+.+.+..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~-------~g~~i~vd~Ir~l~~~~~~~~~~~ 88 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI-------FDKDLSKSEFLSAINKLYFSSFVQ 88 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc-------CCCcCCHHHHHHHHHHhccCCccc
Confidence 34556899999999999999999987621 1111110 0111 1233444444321
Q ss_pred cCCcEEEhhhHHHhhhhcCCCCCCCchhHHHHHHHHHHhhccccCCCceEEEeccCCCCCCCccCCCCCcccccccCCCC
Q 002754 509 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKP 588 (884)
Q Consensus 509 ~~p~Il~iDEId~l~~~r~~~~~Sgge~~~~~l~~LL~~ld~~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I~~~~P 588 (884)
....|++||+++.+... ..+.||..++. +..++++|..|+.++.+-|.++++| . ++.|.+|
T Consensus 89 ~~~KvvII~~~e~m~~~--------------a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~SRc--~-~~~f~~l 149 (299)
T PRK07132 89 SQKKILIIKNIEKTSNS--------------LLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVSRC--Q-VFNVKEP 149 (299)
T ss_pred CCceEEEEecccccCHH--------------HHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHhCe--E-EEECCCC
Confidence 24568999998877543 77889999994 5677788877777888999998844 3 8999999
Q ss_pred ChhhHHHHHHH
Q 002754 589 GLIGRMEILKV 599 (884)
Q Consensus 589 ~~eeR~~Il~~ 599 (884)
+.++....+..
T Consensus 150 ~~~~l~~~l~~ 160 (299)
T PRK07132 150 DQQKILAKLLS 160 (299)
T ss_pred CHHHHHHHHHH
Confidence 98887776654
No 417
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.18 E-value=8.5e-05 Score=79.27 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=37.7
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhh--ccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el--~~~~~~is~ 484 (884)
|.+...+.++++.++.| ++|+||||+|||||+++|+|.. .+..+.+..
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~ 61 (243)
T TIGR01978 10 VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61 (243)
T ss_pred ECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEE
Confidence 43445678888898887 8899999999999999999984 455565543
No 418
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00036 Score=74.32 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=34.7
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeee
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (884)
.+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~ 57 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL 57 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 466777887776 899999999999999999998776666553
No 419
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.18 E-value=0.00047 Score=71.68 Aligned_cols=67 Identities=25% Similarity=0.460 Sum_probs=41.0
Q ss_pred EEEECCCCCCchhHHHHhhhhhccc----eeeeec-chhhhh----h-----ccccchhhhhHHHHHHhcCCcEEEhhhH
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAGVN----FFSISA-SQFVEI----Y-----VGVGASRVRSLYQEAKDNAPSVVFIDEL 519 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~----~~~is~-s~~~~~----~-----~g~~~~~l~~lf~~a~~~~p~Il~iDEI 519 (884)
++|+||+|+||||++++|++.+..+ .+.+.- .++... + +|.....+...+..+....|+++++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 8999999999999999999877532 122211 111100 1 1112222344455556678999999998
Q ss_pred H
Q 002754 520 D 520 (884)
Q Consensus 520 d 520 (884)
.
T Consensus 84 r 84 (198)
T cd01131 84 R 84 (198)
T ss_pred C
Confidence 3
No 420
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.17 E-value=0.00073 Score=70.27 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=22.0
Q ss_pred cccccCCc---EEEECCCCCCchhHHHHhh
Q 002754 446 RGVRIPGG---ILLCGPPGVGKTLLAKAVA 472 (884)
Q Consensus 446 ~g~~i~~g---iLL~GPpGtGKTtLakaLA 472 (884)
.++.+..+ ++|+||||+|||||++.|+
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 34444443 8999999999999999998
No 421
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.17 E-value=0.0007 Score=80.82 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=37.7
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..++++++.+++| +.|+||+|+|||||++.|+|...+.-+.+..
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~ 381 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 3678889999988 9999999999999999999988777666543
No 422
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=5.7e-05 Score=81.32 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=40.1
Q ss_pred hhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 436 ~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
.+.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+...
T Consensus 14 ~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 65 (255)
T PRK11300 14 RFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR 65 (255)
T ss_pred EECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEEC
Confidence 344445677888888877 88999999999999999999987777766553
No 423
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.17 E-value=7.9e-05 Score=80.17 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=38.0
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (252)
T TIGR03005 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV 59 (252)
T ss_pred CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 334667788888877 8999999999999999999988777776654
No 424
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.16 E-value=0.0019 Score=65.76 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=24.0
Q ss_pred EEEECCCCCCchhHHHHhhhhh---ccceeeeecc
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISAS 485 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~s 485 (884)
+++.||||+|||+|+-.++... +.+.+.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999998776533 5556566543
No 425
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.16 E-value=0.0001 Score=80.25 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=39.3
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.....+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 17 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (269)
T PRK11831 17 RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF 66 (269)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 43444678888998887 8999999999999999999988776666654
No 426
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.16 E-value=0.00044 Score=71.10 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=43.8
Q ss_pred cEEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhh------cc----------ccchhhhhHHHHHHhcCCcEEEh
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY------VG----------VGASRVRSLYQEAKDNAPSVVFI 516 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~------~g----------~~~~~l~~lf~~a~~~~p~Il~i 516 (884)
.++|+||||+|||||+++|++.+......+...+..+.. ++ .....+..++..+.+..|+++++
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~i 106 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRIIV 106 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEEE
Confidence 389999999999999999999875443333222211110 00 01112345566667788999999
Q ss_pred hhHH
Q 002754 517 DELD 520 (884)
Q Consensus 517 DEId 520 (884)
+|+.
T Consensus 107 gEir 110 (186)
T cd01130 107 GEVR 110 (186)
T ss_pred EccC
Confidence 9994
No 427
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.00025 Score=76.63 Aligned_cols=45 Identities=27% Similarity=0.399 Sum_probs=37.5
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 34567788888887 8899999999999999999988776666654
No 428
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.00093 Score=79.82 Aligned_cols=133 Identities=20% Similarity=0.258 Sum_probs=80.1
Q ss_pred HHHHHHHHhhccc---ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecch--hhhh----------
Q 002754 428 LELEEIVKFFTHG---EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ--FVEI---------- 490 (884)
Q Consensus 428 ~~l~~lv~~~~~~---~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~--~~~~---------- 490 (884)
++.+++...|..+ ..+++++++++.| +.|+||+|.||||++..|-+..++..++|-.+. +.+.
T Consensus 466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig 545 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIG 545 (716)
T ss_pred EEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHee
Confidence 3445555555432 3788999999988 999999999999999999998888877765433 2211
Q ss_pred hccccchhh-hhHHHHHHhcCCcEEEhhhHHHhhhh-----------cC--------CCCCCCchhHHHHHHHHHHhhcc
Q 002754 491 YVGVGASRV-RSLYQEAKDNAPSVVFIDELDAVGRE-----------RG--------LIKGSGGQERDATLNQLLVCLDG 550 (884)
Q Consensus 491 ~~g~~~~~l-~~lf~~a~~~~p~Il~iDEId~l~~~-----------r~--------~~~~Sgge~~~~~l~~LL~~ld~ 550 (884)
++||.+-.+ +.+-++..-.-+ -.--||+...... .+ +..-|||++.|.+++.-|
T Consensus 546 ~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL----- 619 (716)
T KOG0058|consen 546 LVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL----- 619 (716)
T ss_pred eeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH-----
Confidence 233332211 222233222222 1222333322110 00 112299999999998887
Q ss_pred ccCCCceEEE-eccCCCC
Q 002754 551 FEGRGNVITI-ASTNRPD 567 (884)
Q Consensus 551 ~~~~~~VlVI-atTN~~~ 567 (884)
..++.|+|+ .+|.-+|
T Consensus 620 -lr~P~VLILDEATSALD 636 (716)
T KOG0058|consen 620 -LRNPRVLILDEATSALD 636 (716)
T ss_pred -hcCCCEEEEechhhhcc
Confidence 567888888 5665444
No 429
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.15 E-value=0.00029 Score=72.18 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=48.0
Q ss_pred HHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 430 l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+.++.+.|+......+.++.+..| +.|.||||+||||..-++.|-..+..+.+-..
T Consensus 7 a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld 64 (243)
T COG1137 7 AENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLD 64 (243)
T ss_pred ehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEEC
Confidence 467788888888889999999988 89999999999999999999887777766543
No 430
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.14 E-value=0.00096 Score=69.21 Aligned_cols=84 Identities=25% Similarity=0.343 Sum_probs=55.8
Q ss_pred ccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecch--hhhhhccccchhhhhHHHHHHhc-CCcEEEhh
Q 002754 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ--FVEIYVGVGASRVRSLYQEAKDN-APSVVFID 517 (884)
Q Consensus 443 ~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~--~~~~~~g~~~~~l~~lf~~a~~~-~p~Il~iD 517 (884)
+..+++.++.| +.+.|.||+|||||+++|||.+.+..+.|.... .......+....+..+|+..... .|. +-|.
T Consensus 22 l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~-lTie 100 (263)
T COG1101 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE-LTIE 100 (263)
T ss_pred HhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc-ccHH
Confidence 45567788877 779999999999999999999988877665443 22333344455567788776543 354 4444
Q ss_pred hHHHhhhhcC
Q 002754 518 ELDAVGRERG 527 (884)
Q Consensus 518 EId~l~~~r~ 527 (884)
|=-.+...|+
T Consensus 101 ENl~la~~Rg 110 (263)
T COG1101 101 ENLALAESRG 110 (263)
T ss_pred HHHHHHHhcC
Confidence 4334444443
No 431
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00041 Score=81.17 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=45.0
Q ss_pred HHHHHHhhccc-ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 430 LEEIVKFFTHG-EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 430 l~~lv~~~~~~-~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
++++...+.+. ....++++.+++| +.|+|++|+|||||+.+|+|.+.+.-+++...
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vn 381 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVN 381 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEEC
Confidence 44565555543 5678889999988 99999999999999999999988777766554
No 432
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.14 E-value=0.00012 Score=78.22 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=39.2
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+.....+.++++.+..| ++|.||||+|||||+++|+|...+..+.+...
T Consensus 12 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 62 (242)
T TIGR03411 12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFG 62 (242)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC
Confidence 43344677888888877 88999999999999999999887776666543
No 433
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.14 E-value=0.00012 Score=79.14 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=39.1
Q ss_pred hhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 436 ~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.|.+...+.++++.+..| ++|.||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (258)
T PRK11701 15 LYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHY 65 (258)
T ss_pred EcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 333334667788888877 9999999999999999999988777676654
No 434
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.14 E-value=0.00028 Score=73.47 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=38.2
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
....+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~ 60 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 334677888888887 8999999999999999999988777666654
No 435
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.14 E-value=8.2e-05 Score=80.35 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=41.6
Q ss_pred HHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 432 ~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
++...+.....+.++++.+..| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 10 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 65 (257)
T PRK10619 10 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65 (257)
T ss_pred eeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 3333444445677888888887 88999999999999999999887766766543
No 436
>PRK10908 cell division protein FtsE; Provisional
Probab=97.13 E-value=0.00012 Score=77.08 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=37.0
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+..| ++|+||||+|||||+++|+|...+..+++..
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 4567778888777 8899999999999999999988777776654
No 437
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.13 E-value=0.0018 Score=73.72 Aligned_cols=71 Identities=27% Similarity=0.475 Sum_probs=48.1
Q ss_pred EEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhh------hccc--------cchhhhhHHHHHHhcCCcEEEh
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------YVGV--------GASRVRSLYQEAKDNAPSVVFI 516 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~------~~g~--------~~~~l~~lf~~a~~~~p~Il~i 516 (884)
++|.|+||+|||||+..++... +.+.++++..+.... .+|. ....+..+++.+....|.+++|
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVI 164 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVII 164 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEE
Confidence 8999999999999999998755 235666655432211 1111 1122455666677778999999
Q ss_pred hhHHHhhh
Q 002754 517 DELDAVGR 524 (884)
Q Consensus 517 DEId~l~~ 524 (884)
|++..+..
T Consensus 165 DSIq~l~~ 172 (372)
T cd01121 165 DSIQTVYS 172 (372)
T ss_pred cchHHhhc
Confidence 99988753
No 438
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.12 E-value=0.0007 Score=81.58 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=36.7
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+.++++.+++| ++++||+|+|||||++.|+|...+..+.+..
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i 399 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL 399 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 567888888887 9999999999999999999988776666543
No 439
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.12 E-value=0.0008 Score=70.05 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=19.1
Q ss_pred EEEECCCCCCchhHHHHhhh
Q 002754 454 ILLCGPPGVGKTLLAKAVAG 473 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~ 473 (884)
++|+||||+|||||+++|++
T Consensus 32 ~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 32 LLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEECCCCCccHHHHHHHHH
Confidence 89999999999999999994
No 440
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.00032 Score=74.95 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=38.5
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
....+.++++.+..| ++|.||||+|||||+++|+|...+..+.+...
T Consensus 14 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 62 (242)
T PRK11124 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62 (242)
T ss_pred CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 334677888888877 89999999999999999999887777766543
No 441
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.12 E-value=0.00047 Score=81.05 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=35.7
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I 83 (549)
T PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI 83 (549)
T ss_pred EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 567788888877 8899999999999999999988666565543
No 442
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.10 E-value=0.00033 Score=73.29 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=36.8
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 3567788888877 8899999999999999999988777676654
No 443
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.10 E-value=0.00034 Score=72.63 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=39.0
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~ 60 (200)
T PRK13540 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60 (200)
T ss_pred eCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEE
Confidence 33344678888888877 8999999999999999999988777666654
No 444
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.00033 Score=74.95 Aligned_cols=45 Identities=29% Similarity=0.399 Sum_probs=37.3
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 62 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 34567788888877 8899999999999999999988776666654
No 445
>PRK08118 topology modulation protein; Reviewed
Probab=97.09 E-value=0.00061 Score=69.00 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=28.7
Q ss_pred cEEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.|+++||||+|||||++.|+..++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 38999999999999999999999998877663
No 446
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00034 Score=73.08 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=35.7
Q ss_pred ccccccccccCCc-EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG-ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g-iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 58 (211)
T cd03264 14 RALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58 (211)
T ss_pred EEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence 4566777777666 7799999999999999999988776666654
No 447
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.08 E-value=0.00096 Score=80.45 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=37.4
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+++| ++|+||+|+|||||++.|+|...+..+.+..
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~ 374 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRF 374 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 3577888888888 9999999999999999999988777666543
No 448
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.08 E-value=0.00034 Score=73.62 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=37.0
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 64 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF 64 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 3667788888877 8899999999999999999988777776654
No 449
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00011 Score=80.35 Aligned_cols=42 Identities=36% Similarity=0.482 Sum_probs=34.7
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccc
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 478 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~ 478 (884)
+.+...+.++++.+..| +.|+||||+|||||+++|+|.+.+.
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 34445677888888877 8899999999999999999987654
No 450
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.07 E-value=0.00085 Score=82.80 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=43.1
Q ss_pred HHHHHHHhhcc--cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 429 ELEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 429 ~l~~lv~~~~~--~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+++++...|.. ...+.++++.++.| +.|+|++|+|||||++.|+|...+..+.+..+
T Consensus 457 ~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~id 517 (694)
T TIGR01846 457 TFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVD 517 (694)
T ss_pred EEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 33444444532 34678889999887 99999999999999999999887776665443
No 451
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.00036 Score=74.18 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=37.8
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
..+.++++.++.| ++|+||||+|||||+++|+|.+.+..+++...
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 69 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFN 69 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 3577888888877 88999999999999999999887777766543
No 452
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.07 E-value=0.00037 Score=74.36 Aligned_cols=47 Identities=17% Similarity=0.351 Sum_probs=38.2
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
+...+.++++.+..| +.|+||||+|||||+++|+|...+..+++...
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (240)
T PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVD 61 (240)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 334677888888777 88999999999999999999887766766543
No 453
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.07 E-value=0.00037 Score=72.19 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=37.4
Q ss_pred ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 439 ~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRW 59 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence 344667788888877 8999999999999999999988766666543
No 454
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.07 E-value=0.00011 Score=79.29 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=38.8
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+.....+.++++.+..| ++|+||||+|||||+++|+|.+.+..+++..
T Consensus 11 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 60 (256)
T TIGR03873 11 AGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60 (256)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 33445677888888877 8899999999999999999988776666654
No 455
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.06 E-value=0.00083 Score=79.18 Aligned_cols=183 Identities=25% Similarity=0.308 Sum_probs=102.8
Q ss_pred EEEECCCCCCchhHHHHhhhh--hccceeeeecchhhhh-----hccccchhhhhHHHHH-----HhcCCcEEEhhhHHH
Q 002754 454 ILLCGPPGVGKTLLAKAVAGE--AGVNFFSISASQFVEI-----YVGVGASRVRSLYQEA-----KDNAPSVVFIDELDA 521 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e--l~~~~~~is~s~~~~~-----~~g~~~~~l~~lf~~a-----~~~~p~Il~iDEId~ 521 (884)
+++.|.+||||-.|+++|-.. ..-||+.++|+.+-+. .+|+..+.....+.+- .......+|+|||..
T Consensus 339 vll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd 418 (606)
T COG3284 339 VLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGD 418 (606)
T ss_pred eEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHhhh
Confidence 799999999999999999764 4568999999876543 4454444322222111 112235799999987
Q ss_pred hhhhcCCCCCCCchhHHHHHHHHHHhhcc--------ccCCCceEEEeccCCCCCCCccCCCCCcccccc-------cCC
Q 002754 522 VGRERGLIKGSGGQERDATLNQLLVCLDG--------FEGRGNVITIASTNRPDILDPALVRPGRFDRKI-------FIP 586 (884)
Q Consensus 522 l~~~r~~~~~Sgge~~~~~l~~LL~~ld~--------~~~~~~VlVIatTN~~~~LdpaLlr~gRfd~~I-------~~~ 586 (884)
+.-. ....||..+.. ....-.|-||++|+..= ..|.+-|||-+-+ .|.
T Consensus 419 ~p~~--------------~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i~ 481 (606)
T COG3284 419 MPLA--------------LQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVIT 481 (606)
T ss_pred chHH--------------HHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCeeec
Confidence 7443 55667766653 11223478898887631 2445566775433 345
Q ss_pred CCChhhHHH---HHHHHHcc-CCCCCcccHHHHHhhCCCC---CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 002754 587 KPGLIGRME---ILKVHARK-KPMADDVDYLAVASMTDGM---VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (884)
Q Consensus 587 ~P~~eeR~~---Il~~~l~~-~~~~~didl~~lA~~t~G~---s~adL~~Lv~~A~~~A~~~~~~~It~edi~~Al~ 656 (884)
.|...+|.+ .+..++.. ....-.++-+.++....-- +-++|.++++.++. ......|...|+...+-
T Consensus 482 lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~---l~~~g~~~~~dlp~~l~ 555 (606)
T COG3284 482 LPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAA---LSDGGRIRVSDLPPELL 555 (606)
T ss_pred cCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHH---cCCCCeeEcccCCHHHH
Confidence 566666543 33333332 2222233333333332222 34566666666653 33344466666655443
No 456
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.002 Score=67.60 Aligned_cols=35 Identities=29% Similarity=0.554 Sum_probs=31.2
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhh
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el 475 (884)
..++.+++.+..| ..|.||||+|||||+.+|+|.-
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 6678888999888 7799999999999999999965
No 457
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.06 E-value=0.0009 Score=81.00 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=37.7
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+++| ++|+|++|+|||||++.|+|...+.-+.+..
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 3678889999888 9999999999999999999988777666543
No 458
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.00092 Score=68.32 Aligned_cols=43 Identities=30% Similarity=0.417 Sum_probs=34.3
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+.++++.+..| +.+.||+|||||||++.+||...+.-+++..
T Consensus 20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l 64 (259)
T COG4525 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQL 64 (259)
T ss_pred hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEE
Confidence 456677777777 8899999999999999999988666555543
No 459
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.05 E-value=0.00059 Score=76.70 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=36.4
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+..| +.|+|+||+|||||+++|+|.+.+..+.+..
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~ 80 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAW 80 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEE
Confidence 3567788888888 8899999999999999999988666665543
No 460
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.04 E-value=0.0004 Score=73.50 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=36.7
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~ 69 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL 69 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEE
Confidence 577788888877 9999999999999999999988777676654
No 461
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.04 E-value=0.00013 Score=77.09 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=36.7
Q ss_pred cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 440 ~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
...+.++++.+..| ++|.||||+|||||+++|+|.+.+..+.+..
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIF 59 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 34567778888777 8899999999999999999988776666644
No 462
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.00016 Score=77.06 Aligned_cols=48 Identities=23% Similarity=0.323 Sum_probs=38.3
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 64 (237)
T PRK11614 15 YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 64 (237)
T ss_pred eCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 33344677788888877 8899999999999999999988776666544
No 463
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.03 E-value=0.0013 Score=78.91 Aligned_cols=44 Identities=25% Similarity=0.201 Sum_probs=37.9
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+++| +.|+||+|+|||||++.|+|...+..+.+..
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 382 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 3678889999888 9999999999999999999988777766644
No 464
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.001 Score=66.13 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=21.6
Q ss_pred CcEEEECCCCCCchhHHHHhhhhh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEA 475 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el 475 (884)
..++++|+||+||||++.-|++.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 348999999999999999999866
No 465
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.03 E-value=0.001 Score=79.77 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=37.2
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+++| +.|+||+|+|||||++.|+|...+..+.+..
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 377 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRL 377 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 4577888888887 9999999999999999999988776665543
No 466
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00016 Score=78.09 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=38.6
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (255)
T PRK11231 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61 (255)
T ss_pred ECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEE
Confidence 44445678888888877 8899999999999999999987766665543
No 467
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.02 E-value=0.00016 Score=78.48 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=40.8
Q ss_pred HHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 431 ~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
+++...+.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 70 (265)
T PRK10575 15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70 (265)
T ss_pred eeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 33333444445678888888877 8899999999999999999987766666543
No 468
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.00042 Score=74.10 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=36.6
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 4567788888877 8899999999999999999988776666544
No 469
>PRK07261 topology modulation protein; Provisional
Probab=97.02 E-value=0.00079 Score=68.40 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=27.4
Q ss_pred EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
++|+|+||+|||||++.|+..++.+.+.++.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7899999999999999999998888776653
No 470
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.02 E-value=0.0004 Score=75.15 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=38.6
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~ 61 (258)
T PRK13548 12 LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61 (258)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 33344677888888877 8899999999999999999988776666654
No 471
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=97.02 E-value=0.00056 Score=79.55 Aligned_cols=153 Identities=16% Similarity=0.253 Sum_probs=82.9
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecchhh--h-h-hccccchh-hhhHHHHH-------
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV--E-I-YVGVGASR-VRSLYQEA------- 506 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~--~-~-~~g~~~~~-l~~lf~~a------- 506 (884)
.+..++++.+|.| +||+||+|||||+|.|.+++--...-+.+.+..-. . . |+.|.+-. ++.+=+++
T Consensus 449 ~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~ 528 (659)
T KOG0060|consen 449 LLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAE 528 (659)
T ss_pred eeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccc
Confidence 3456689999977 99999999999999999998654444444432211 1 0 11111100 00000000
Q ss_pred --HhcCC-c--E-EEhhhH--HHhhhhcCCCC----------CCCchhHHHHHHHHHHhhccccCCCceEEE--eccCCC
Q 002754 507 --KDNAP-S--V-VFIDEL--DAVGRERGLIK----------GSGGQERDATLNQLLVCLDGFEGRGNVITI--ASTNRP 566 (884)
Q Consensus 507 --~~~~p-~--I-l~iDEI--d~l~~~r~~~~----------~Sgge~~~~~l~~LL~~ld~~~~~~~VlVI--atTN~~ 566 (884)
....+ + + -+++++ ..+....+.-. =|+||..|..++.|+ ...+.+.|+ +|++..
T Consensus 529 ~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf------y~kPk~AiLDE~TSAv~ 602 (659)
T KOG0060|consen 529 DMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF------YHKPKFAILDECTSAVT 602 (659)
T ss_pred cccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH------hcCCceEEeechhhhcc
Confidence 00000 0 0 001111 00111111111 188999999999998 556777777 555555
Q ss_pred CCCCccCCCCCcccccccCCCCChhhHHHHHHHHHc
Q 002754 567 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 602 (884)
Q Consensus 567 ~~LdpaLlr~gRfd~~I~~~~P~~eeR~~Il~~~l~ 602 (884)
..+..++-+-+ +...+..-+...|..+++.|=.
T Consensus 603 ~dvE~~~Yr~~---r~~giT~iSVgHRkSL~kfHd~ 635 (659)
T KOG0060|consen 603 EDVEGALYRKC---REMGITFISVGHRKSLWKFHDY 635 (659)
T ss_pred HHHHHHHHHHH---HHcCCeEEEeccHHHHHhhhhE
Confidence 55555555433 3455555677788888887753
No 472
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.02 E-value=0.0011 Score=80.35 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=36.5
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+.++++.++.| ++|+||+|+|||||++.|+|...+..+.+..
T Consensus 350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 567888888887 9999999999999999999988776665543
No 473
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.0026 Score=66.61 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=43.1
Q ss_pred EEEECCCCCCchhHHHHhhhhh--------ccceeeeecch-hhhhhcc--c-----------cchhhhhHHHHHHhcCC
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEA--------GVNFFSISASQ-FVEIYVG--V-----------GASRVRSLYQEAKDNAP 511 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el--------~~~~~~is~s~-~~~~~~g--~-----------~~~~l~~lf~~a~~~~p 511 (884)
.|+.||||||||||++-||.-+ +..++-++-.. ......| + ....-.-++...+.+.|
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~P 219 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMSP 219 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcCC
Confidence 6899999999999999998754 23344444322 1111111 0 11111345667788999
Q ss_pred cEEEhhhHHH
Q 002754 512 SVVFIDELDA 521 (884)
Q Consensus 512 ~Il~iDEId~ 521 (884)
.|+++|||..
T Consensus 220 EViIvDEIGt 229 (308)
T COG3854 220 EVIIVDEIGT 229 (308)
T ss_pred cEEEEecccc
Confidence 9999999954
No 474
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.98 E-value=0.00019 Score=77.20 Aligned_cols=48 Identities=21% Similarity=0.372 Sum_probs=37.4
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccc-----eeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN-----FFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~-----~~~is~ 484 (884)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+. .+.+..
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~ 68 (253)
T PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL 68 (253)
T ss_pred eCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 33334678888888877 8899999999999999999987542 555543
No 475
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.02 Score=65.04 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=26.7
Q ss_pred cEEEECCCCCCchhHHHHhhhhh---ccceeeeecchh
Q 002754 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQF 487 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~ 487 (884)
-++|+||+|+||||++..||..+ +.....+++..+
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 38999999999999999998755 445555655443
No 476
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.98 E-value=0.00022 Score=76.74 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=32.7
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhc
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~ 476 (884)
|.....+.++++.+..| ++|+||||+|||||+++|+|..+
T Consensus 16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 16 YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred ECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 33334667788888877 89999999999999999999753
No 477
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.00014 Score=80.02 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhh
Q 002754 424 GKIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (884)
Q Consensus 424 ~~~~~~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el 475 (884)
++..+.++++...|.....+.++++.+..| ++|+||||+|||||+++|+|..
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 89 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMN 89 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 334445555555555555778888888877 8899999999999999999964
No 478
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.97 E-value=0.0053 Score=76.28 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.5
Q ss_pred cEEEECCCCCCchhHHHHhhhh
Q 002754 453 GILLCGPPGVGKTLLAKAVAGE 474 (884)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~e 474 (884)
.++|+||||+|||||+|.+++.
T Consensus 324 ~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 324 VLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred EEEEECCCCCCchHHHHHHHHH
Confidence 4899999999999999999986
No 479
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.00023 Score=76.46 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=37.2
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhcc-----ceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGV-----NFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~-----~~~~is~ 484 (884)
+.+...+.++++.++.| ++|+||||+|||||+++|+|...+ ..+.+..
T Consensus 13 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 67 (250)
T PRK14247 13 FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL 67 (250)
T ss_pred ECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE
Confidence 33344677888888877 889999999999999999998753 3565543
No 480
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.96 E-value=0.0028 Score=72.42 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=36.6
Q ss_pred CcEEEECCCCCCchhHHHHhhhhhccce-eeeecchhhhhhccccchhhhhHHHHHHhcCCcEEEhhhHHHh
Q 002754 452 GGILLCGPPGVGKTLLAKAVAGEAGVNF-FSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 522 (884)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~-~~is~s~~~~~~~g~~~~~l~~lf~~a~~~~p~Il~iDEId~l 522 (884)
.+++++||+|||||+++.+|+....... +.++.+.++.... . ..+.. -..+++|+|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCC
Confidence 4589999999999999999876621111 2333333221110 0 11111 234679999999664
No 481
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.0005 Score=74.69 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=38.9
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
|.....+.++++.+..| +.|+||||+|||||+++|+|...+..+++..
T Consensus 17 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 66 (265)
T PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL 66 (265)
T ss_pred ECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEE
Confidence 33344677888888887 8999999999999999999988776666654
No 482
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.96 E-value=0.00043 Score=72.75 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=33.6
Q ss_pred ccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeee
Q 002754 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (884)
Q Consensus 443 ~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (884)
+.++++.++.| +.|+||||+|||||+++|+|...+..+.+
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i 44 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF 44 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE
Confidence 46677888877 88999999999999999999876665655
No 483
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.00051 Score=79.02 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=44.8
Q ss_pred HHHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 429 ELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 429 ~l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
...++.+.++....+.++++.++.| ++|+||||+|||||+++|++...+..+.+..
T Consensus 30 ~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i 87 (400)
T PRK10070 30 SKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLI 87 (400)
T ss_pred cHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEE
Confidence 3455666666655678889999888 8999999999999999999988776666543
No 484
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.95 E-value=0.0031 Score=73.69 Aligned_cols=71 Identities=23% Similarity=0.470 Sum_probs=49.3
Q ss_pred EEEECCCCCCchhHHHHhhhhh---ccceeeeecchhhhhh------ccc--------cchhhhhHHHHHHhcCCcEEEh
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY------VGV--------GASRVRSLYQEAKDNAPSVVFI 516 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~~~~~~------~g~--------~~~~l~~lf~~a~~~~p~Il~i 516 (884)
++|+|+||+|||||+..++... +...++++..+..... +|. ....+..+++.+....|.+++|
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVVI 162 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVVI 162 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEEE
Confidence 8999999999999999998755 4566777655433211 111 1123455666677778999999
Q ss_pred hhHHHhhh
Q 002754 517 DELDAVGR 524 (884)
Q Consensus 517 DEId~l~~ 524 (884)
|.+..+..
T Consensus 163 DSIq~l~~ 170 (446)
T PRK11823 163 DSIQTMYS 170 (446)
T ss_pred echhhhcc
Confidence 99988754
No 485
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.95 E-value=0.00057 Score=73.33 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=36.3
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccc-----eeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN-----FFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~-----~~~is~ 484 (884)
..+.++++.++.| +.|+||||+|||||+++|+|...+. .+.+..
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~ 65 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF 65 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE
Confidence 4567788888887 8899999999999999999988664 565544
No 486
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.95 E-value=0.0017 Score=68.59 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=20.4
Q ss_pred CCcEEEECCCCCCchhHHHHhhh
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAG 473 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~ 473 (884)
|.-++|+|+||+||||+|+.+++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 44599999999999999999975
No 487
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.94 E-value=0.00052 Score=72.90 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=32.8
Q ss_pred ccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 445 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 445 ~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 44 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL 44 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 456666666 8999999999999999999988776666654
No 488
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00074 Score=82.26 Aligned_cols=120 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhcccc-----chhhhhHHHHHH-hcCCcE
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG-----ASRVRSLYQEAK-DNAPSV 513 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~-----~~~l~~lf~~a~-~~~p~I 513 (884)
.+.++++.+..| +.|+||||+|||||+++|+|.+.+..+.|.+...--...... ...+..+|+... ...|..
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~ 418 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQ 418 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCC
Q ss_pred EEhhhHHHhhhhcCCCCC----------------------------CCchhHHHHHHHHHHhhccccCCCceEEE-eccC
Q 002754 514 VFIDELDAVGRERGLIKG----------------------------SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTN 564 (884)
Q Consensus 514 l~iDEId~l~~~r~~~~~----------------------------Sgge~~~~~l~~LL~~ld~~~~~~~VlVI-atTN 564 (884)
.+.|.+.......+.... |||++.+..+...| .....++|+ .+|+
T Consensus 419 tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL------~~~p~llllDEPts 492 (623)
T PRK10261 419 TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARAL------ALNPKVIIADEAVS 492 (623)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHH------hcCCCEEEEeCCcc
Q ss_pred CCC
Q 002754 565 RPD 567 (884)
Q Consensus 565 ~~~ 567 (884)
..|
T Consensus 493 ~LD 495 (623)
T PRK10261 493 ALD 495 (623)
T ss_pred cCC
No 489
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.93 E-value=0.00055 Score=71.20 Aligned_cols=45 Identities=29% Similarity=0.413 Sum_probs=38.1
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecc
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (884)
..+.++++.++.| ++|.||||+|||||+++|+|...+..+.+...
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~ 65 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVP 65 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEc
Confidence 3677888888887 89999999999999999999887777766543
No 490
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.93 E-value=0.0013 Score=79.28 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=43.1
Q ss_pred HHHHHHhhc-ccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 430 LEEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 430 l~~lv~~~~-~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+++...|. +...++++++.++.| +.|+||+|+||||+++.|.+..++..|.+-.
T Consensus 331 f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 331 FENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred EEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 344444454 456788899999888 8899999999999999999988776655544
No 491
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0017 Score=73.68 Aligned_cols=36 Identities=31% Similarity=0.287 Sum_probs=27.7
Q ss_pred CCcEEEECCCCCCchhHHHHhhhhh---ccceeeeecch
Q 002754 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQ 486 (884)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s~ 486 (884)
|+-++|+||+|+||||++..||..+ +..++.+++..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 3459999999999999999999866 34555555543
No 492
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.00014 Score=78.59 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=35.4
Q ss_pred HHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhc
Q 002754 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (884)
Q Consensus 432 ~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~ 476 (884)
++...|.....+.++++.++.| +.|+||||+|||||+++|+|...
T Consensus 17 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 17 GMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred eEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3333343344677888888877 89999999999999999999865
No 493
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.93 E-value=0.00031 Score=73.95 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=63.2
Q ss_pred HHHHHHhhcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeecchhhhhhccccchhhhhHHHHHH
Q 002754 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAK 507 (884)
Q Consensus 430 l~~lv~~~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~~~g~~~~~l~~lf~~a~ 507 (884)
++++.+.|++.....++++.+|.| +.|.||||+||||+.|+|.+.+.+..++|++..---.+ .....+..+-+. |
T Consensus 5 ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~--~~~~rIGyLPEE-R 81 (300)
T COG4152 5 IEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ--EIKNRIGYLPEE-R 81 (300)
T ss_pred EecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh--hhhhhcccChhh-h
Confidence 456777888888889999999988 78999999999999999999999988888765411100 001112222222 2
Q ss_pred hcCCcEEEhhhHHHhhh
Q 002754 508 DNAPSVVFIDELDAVGR 524 (884)
Q Consensus 508 ~~~p~Il~iDEId~l~~ 524 (884)
..-|...+.|.+-.++.
T Consensus 82 GLy~k~tv~dql~yla~ 98 (300)
T COG4152 82 GLYPKMTVEDQLKYLAE 98 (300)
T ss_pred ccCccCcHHHHHHHHHH
Confidence 33455677777766643
No 494
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.93 E-value=0.0013 Score=63.73 Aligned_cols=35 Identities=46% Similarity=0.758 Sum_probs=27.7
Q ss_pred EEEECCCCCCchhHHHHhhhhhccceeeeecchhhhh
Q 002754 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (884)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~s~~~~~ 490 (884)
|+++||||+||||+++.++..++ ...++...+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~ 36 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRR 36 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHH
Confidence 68999999999999999999888 444555554443
No 495
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.93 E-value=0.00053 Score=72.07 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=35.9
Q ss_pred cccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 442 ~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
.+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 63 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLL 63 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEE
Confidence 567788888877 8899999999999999999987666665544
No 496
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.93 E-value=0.0024 Score=64.08 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcc----cccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeee
Q 002754 428 LELEEIVKFFTH----GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (884)
Q Consensus 428 ~~l~~lv~~~~~----~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (884)
+++..+.+.+.. -.+++.+++.+..| +.|+||+|+|||||+-.+||--.+..+.+.
T Consensus 7 i~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~ 68 (228)
T COG4181 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVR 68 (228)
T ss_pred eehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEE
Confidence 344444444432 23567777888777 999999999999999999996665555554
No 497
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.92 E-value=0.00058 Score=72.48 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=32.7
Q ss_pred cccccccCCc--EEEECCCCCCchhHHHHhhhhhcc----ceeeeec
Q 002754 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGV----NFFSISA 484 (884)
Q Consensus 444 ~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~----~~~~is~ 484 (884)
.++++.+..| ++|+||||+|||||+++|+|...+ ..+.+..
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~ 49 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILL 49 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEE
Confidence 4566777766 889999999999999999998776 5555543
No 498
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.00025 Score=76.20 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=33.1
Q ss_pred hcccccccccccccCCc--EEEECCCCCCchhHHHHhhhhhc
Q 002754 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (884)
Q Consensus 437 ~~~~~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~ 476 (884)
+.....+.++++.+..| +.|+||||+|||||+++|+|...
T Consensus 13 ~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred eCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 33344677888888877 88999999999999999999765
No 499
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.00058 Score=72.51 Aligned_cols=44 Identities=30% Similarity=0.443 Sum_probs=36.3
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeeeec
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (884)
..+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI 61 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEE
Confidence 3567778888777 8899999999999999999998776666544
No 500
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.00037 Score=75.81 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=34.1
Q ss_pred ccccccccccCCc--EEEECCCCCCchhHHHHhhhhhccceeee
Q 002754 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (884)
Q Consensus 441 ~~~~~~g~~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (884)
...++.++.++.| +.++|.+|+|||||+|++-+--.+..+.+
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v 63 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE
Confidence 4567788999988 88999999999999999987655555544
Done!