Query 002754
Match_columns 884
No_of_seqs 495 out of 5553
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 18:22:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002754.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1469-1472//hhsearch_pdb/002754hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 1.0 1 1 558.7 40.9 429 412-846 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 1.0 1 1 539.4 41.6 428 413-848 26-470 (499)
3 4b4t_J 26S protease regulatory 1.0 1 1 352.9 20.4 252 410-661 140-392 (405)
4 4b4t_H 26S protease regulatory 1.0 1 1 344.3 20.6 251 411-661 202-453 (467)
5 4b4t_I 26S protease regulatory 1.0 1 1 343.7 23.0 253 409-661 173-426 (437)
6 4b4t_L 26S protease subunit RP 1.0 1 1 343.3 22.6 251 411-661 174-425 (437)
7 4b4t_M 26S protease regulatory 1.0 1 1 342.7 21.2 251 410-660 173-424 (434)
8 4b4t_K 26S protease regulatory 1.0 1 1 336.7 22.4 251 410-660 164-416 (428)
9 3cf2_A TER ATPase, transitiona 1.0 1 1 323.0 6.7 230 412-641 471-701 (806)
10 3cf2_A TER ATPase, transitiona 1.0 1 1 302.0 18.3 247 411-660 197-461 (806)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=1.00 E-value=1 Score=558.67 Aligned_cols=429 Identities=45% Similarity=0.715 Sum_probs=390.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHH
Q ss_conf 76422346558636999999999860143001034663477179978999982257888663305634663122012322
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (884)
Q Consensus 412 ~~~~~l~~~~gl~~~v~~l~~iv~~l~~~~l~~~~g~~i~~gilL~GppGtGKTtLakaLA~el~~~~~~is~s~~~~~~ 491 (884)
.....|+++.|.+..+..+.+++..+..+..+.+++..+|.|++|+||||||||+|+++++++++.+++.++++++...+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHH
T ss_conf 89999888188499999999999984072877643788897389988999888999999999819986607899999997
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 03541123327899883699578826478864202777899811489999999873116457896489822599887896
Q 002754 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (884)
Q Consensus 492 ~g~~~~~l~~lf~~a~~~~p~Ii~lDEid~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI~tTN~~~~ldp 571 (884)
+|.....++.+|..+....|||+||||+|.++..++...+++......+++.|+..|+++....+++||++||.++.+|+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCH
T ss_conf 34108899999999984599789985666542100466676768899999999999753378888899995687566363
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 67789953333457999966699999999812999870018999841899979999999999999999909985599899
Q 002754 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (884)
Q Consensus 572 aLlrpgRfd~~I~i~~P~~eer~~Il~~~l~~~~~~~~~~l~~lA~~t~G~s~adL~~lv~~A~~~A~~~~~~~It~edi 651 (884)
+++|||||++.|.|++|+.++|.+|++.++...++..++++..++..++|++++||.++|+.|+..+.+++...|+.+|+
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl 249 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHH
T ss_conf 31226753068615899989999999999972788605549999875579839999999999999999748982339999
Q ss_pred HHHHHHHHCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCHH
Q ss_conf 999999982975434--540014577888999999999837999875216623799875420430355211014566899
Q 002754 652 LQAAQIEERGMLDRK--ERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQ 729 (884)
Q Consensus 652 ~~Ai~~~~~g~~~~~--~~s~~~~~~vAihEAGhAVva~ll~~~~~i~~vsI~pr~g~~lG~~~~~~~e~~~~~~~~tr~ 729 (884)
..|+.++..+ +.++ ..++.++..+|+||+|||++++.+++.+++.+++|.|++.+++||+++.|.+ +.++.|+.
T Consensus 250 ~~al~~v~~~-~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~---~~~~~~~~ 325 (476)
T 2ce7_A 250 EEAIDRVIAG-PARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEE---DKYLVSRN 325 (476)
T ss_dssp HHHHHHHC---------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC--------------------CCSCBHH
T ss_pred HHHHHHHHCC-CCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEECCCC---CCCCCCHH
T ss_conf 9999998557-4434303210010463799862478763147765435046605742004127876731---12326799
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCC----CCCC-------------CHHHHH
Q ss_conf 999999996214567887709996442300049999999999885-2998877----7887-------------120584
Q 002754 730 SLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH----FGLS-------------NFWVAD 791 (884)
Q Consensus 730 ~l~~~I~v~LAGraAEei~~G~~~~s~ga~~Dl~~At~lA~~mv~-~Gm~~~~----~~~~-------------~~~~~~ 791 (884)
+++++|+++|||||||+++||+ +|+|+++|+++||.+|+.||+ |||++.. |+.. ..|+++
T Consensus 326 ~l~~~i~~~l~Gr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~ 403 (476)
T 2ce7_A 326 ELLDKLTALLGGRAAEEVVFGD--VTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEE 403 (476)
T ss_dssp HHHHHHHHHTHHHHHHHHHHSS--CCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHH
T ss_conf 9999999987589999602379--77450789999999999999984888768851314777654456543345665677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 4999999999999999999999999949999999999999056699999999963
Q 002754 792 RINEIDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVEL 846 (884)
Q Consensus 792 ~~~~id~ev~~~L~~ay~rA~~iL~~nr~~l~~iA~~LLeke~L~~~ei~~il~~ 846 (884)
+...+|.+|+++++.||++|++||.+|++.|+++|++|+++++|+++||.+|++.
T Consensus 404 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 404 VASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHCC
T ss_conf 8999999999999999999999999969999999999997490589999999645
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=539.41 Aligned_cols=428 Identities=44% Similarity=0.669 Sum_probs=384.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHC
Q ss_conf 64223465586369999999998601430010346634771799789999822578886633056346631220123220
Q 002754 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (884)
Q Consensus 413 ~~~~l~~~~gl~~~v~~l~~iv~~l~~~~l~~~~g~~i~~gilL~GppGtGKTtLakaLA~el~~~~~~is~s~~~~~~~ 492 (884)
....|+++.|.+..+..+.+++..+..+..+.++++.++.|++|+||||||||+|+++|++.++.+++.++++++...++
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
T ss_conf 99999981883999999999999830606554146878863899899998899999999887489879983368777642
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 35411233278998836995788264788642027778998114899999998731164578964898225998878966
Q 002754 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 572 (884)
Q Consensus 493 g~~~~~l~~lf~~a~~~~p~Ii~lDEid~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI~tTN~~~~ldpa 572 (884)
|.....++.+|+.+....|+++|+||+|.++..++...+.+.......++.++..|+++.....++++++||.++.+|++
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHCCCC
T ss_conf 15899999999998715998899742988987424676787489999999999874146667618999956884543831
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 77899533334579999666999999998129998700189998418999799999999999999999099855998999
Q 002754 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (884)
Q Consensus 573 LlrpgRfd~~I~i~~P~~eer~~Il~~~l~~~~~~~~~~l~~lA~~t~G~s~adL~~lv~~A~~~A~~~~~~~It~edi~ 652 (884)
++|||||++.|.|++|+.++|.+|++.+++...+..++++..++..++|++|+||.++|++|+..|.+++...|+.+|+.
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~ 265 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 265 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHH
T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 25566145698528999999999999998269997688899999863899799999999999999998289865799999
Q ss_pred HHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEECCC-CCCCCCCCCCHHH
Q ss_conf 9999998297543-4540014577888999999999837999875216623799875420430355-2110145668999
Q 002754 653 QAAQIEERGMLDR-KERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMD-HMKFKEGMLSRQS 730 (884)
Q Consensus 653 ~Ai~~~~~g~~~~-~~~s~~~~~~vAihEAGhAVva~ll~~~~~i~~vsI~pr~g~~lG~~~~~~~-e~~~~~~~~tr~~ 730 (884)
.|++.+..+.... ...++.+++.+++||+||+++++++++.+++.++||.|+ ++++||+. |. + +.++.|+.+
T Consensus 266 ~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr-~~~~g~~~--p~q~---~~~~~t~~~ 339 (499)
T 2dhr_A 266 EAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPR-GRALGFMM--PRRE---DMLHWSRKR 339 (499)
T ss_dssp HHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCS-SCTTCSSH--HHHT---TCCCCCHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC-CCCCCCCC--CCHH---HHHCCCHHH
T ss_conf 99998723644332112477776218999989999866578870667874047-77676003--4146---543048999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCC----CCC----------CCHHHHHHHHH
Q ss_conf 99999996214567887709996442300049999999999885-2998877----788----------71205844999
Q 002754 731 LLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVL-GGLSDKH----FGL----------SNFWVADRINE 795 (884)
Q Consensus 731 l~~~I~v~LAGraAEei~~G~~~~s~ga~~Dl~~At~lA~~mv~-~Gm~~~~----~~~----------~~~~~~~~~~~ 795 (884)
++++|+++||||+||+++||+ +|+|+++|+++||.+|+.||+ |||++.. |+. ...+++++...
T Consensus 340 l~~~i~~~lgGr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~ 417 (499)
T 2dhr_A 340 LLDQIAVALAGRAAEEIVFDD--VTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKR 417 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHSCS--CCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 999999996437677863035--676608799999999999999838888788435357776433443434458999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 99999999999999999999994999999999999905669999999996309
Q 002754 796 IDTEALRILNLCYERAKEILQRNRNLLDAVVNELVEKKSLTKQEFFHLVELHG 848 (884)
Q Consensus 796 id~ev~~~L~~ay~rA~~iL~~nr~~l~~iA~~LLeke~L~~~ei~~il~~~~ 848 (884)
+|.+|+++|+.||++|++||.+|++.|++||++|+++++|+++||.+|++...
T Consensus 418 i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~ 470 (499)
T 2dhr_A 418 IDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLP 470 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHCCCC
T ss_conf 99999999999999999999997999999999999748567999999966388
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=352.87 Aligned_cols=252 Identities=38% Similarity=0.660 Sum_probs=237.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCHHH
Q ss_conf 467642234655863699999999986-0143001034663477179978999982257888663305634663122012
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (884)
Q Consensus 410 ~~~~~~~l~~~~gl~~~v~~l~~iv~~-l~~~~l~~~~g~~i~~gilL~GppGtGKTtLakaLA~el~~~~~~is~s~~~ 488 (884)
.+.+++.|+++.|+++.+..+.+++.. +.++.+|...|..+|+|+||+||||||||++|+++|++++.+++.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 57999988882888999999999999987499999867999888258858999987899999998518885288868951
Q ss_pred HHHCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 32203541123327899883699578826478864202777899811489999999873116457896489822599887
Q 002754 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (884)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Ii~lDEid~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI~tTN~~~~ 568 (884)
..|+|.+...++.+|..++..+|||+||||+|.+++.|....++++...+.+++.||..||++....+|+||+|||+++.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHH
T ss_conf 13354689999999999987099467653341111577888999768999999999996043388887578812698144
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 89667789953333457999966699999999812999870018999841899979999999999999999909985599
Q 002754 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (884)
Q Consensus 569 ldpaLlrpgRfd~~I~i~~P~~eer~~Il~~~l~~~~~~~~~~l~~lA~~t~G~s~adL~~lv~~A~~~A~~~~~~~It~ 648 (884)
+||+|+||||||+.|+|++|+.++|.+||+.+++..++..++++..+|..|.||+|+||.++|++|+..|.++++..|+.
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~ 379 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQ 379 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCH
T ss_pred CCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 89967287767669976996999999999998559999965799999987799999999999999999999869987599
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 8999999999829
Q 002754 649 DDLLQAAQIEERG 661 (884)
Q Consensus 649 edi~~Ai~~~~~g 661 (884)
+||..|+.++...
T Consensus 380 ~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 380 EDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998572
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=344.27 Aligned_cols=251 Identities=37% Similarity=0.615 Sum_probs=237.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCHHHH
Q ss_conf 67642234655863699999999986-01430010346634771799789999822578886633056346631220123
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 411 ~~~~~~l~~~~gl~~~v~~l~~iv~~-l~~~~l~~~~g~~i~~gilL~GppGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
+.+++.|+++.|+++.+..+.+.+.. +.++..|..+|+.+|+|+||+||||||||+||+++|++++.+|+.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHC
T ss_conf 79999878854599999999999998842999998779999981476489998099999999844689869988699502
Q ss_pred HHCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
Q ss_conf 22035411233278998836995788264788642027778998114899999998731164578964898225998878
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Ii~lDEid~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI~tTN~~~~l 569 (884)
.|+|.+...++.+|..++...|||+||||+|.++..|+....++......+++.+|..||++....+|+||+|||+++.+
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 66778999999999998761784675223211013556767786278999999999986555788837988287893117
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 96677899533334579999666999999998129998700189998418999799999999999999999099855998
Q 002754 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 570 dpaLlrpgRfd~~I~i~~P~~eer~~Il~~~l~~~~~~~~~~l~~lA~~t~G~s~adL~~lv~~A~~~A~~~~~~~It~e 649 (884)
||+|+||||||+.|+|++|+.++|.+||+.+++......++++..+|..|.||+|+||.++|++|+..|.++++..|+.+
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~ 441 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEK 441 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHH
T ss_pred CHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 95463666550799838969999999999985489998777999999777999999999999999999998388766999
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999999829
Q 002754 650 DLLQAAQIEERG 661 (884)
Q Consensus 650 di~~Ai~~~~~g 661 (884)
||..|++++..|
T Consensus 442 Df~~Al~kV~~g 453 (467)
T 4b4t_H 442 DFLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999647
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=343.66 Aligned_cols=253 Identities=38% Similarity=0.670 Sum_probs=237.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCHH
Q ss_conf 3467642234655863699999999986-014300103466347717997899998225788866330563466312201
Q 002754 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (884)
Q Consensus 409 ~~~~~~~~l~~~~gl~~~v~~l~~iv~~-l~~~~l~~~~g~~i~~gilL~GppGtGKTtLakaLA~el~~~~~~is~s~~ 487 (884)
..+.+.+.|+++.|+++.+..+.+.+.. +.++..|...|...|+|+||+||||||||++|+++|++++.+++.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred ECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf 33689986005576999999999999998769999986799977788448899963999999999985998799887995
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 23220354112332789988369957882647886420277789981148999999987311645789648982259988
Q 002754 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (884)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~a~~~~p~Ii~lDEid~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI~tTN~~~ 567 (884)
.+.|+|.....++.+|..++..+|||+||||+|.++..|.....++......+++.||..||++....+|+||+|||+++
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHH
T ss_conf 31447669999999999998659918987612220366778887765899999999999724767889979999579805
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 78966778995333345799996669999999981299987001899984189997999999999999999990998559
Q 002754 568 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 647 (884)
Q Consensus 568 ~ldpaLlrpgRfd~~I~i~~P~~eer~~Il~~~l~~~~~~~~~~l~~lA~~t~G~s~adL~~lv~~A~~~A~~~~~~~It 647 (884)
.+||+|+||||||+.|+|++|+.++|.+||+.|++...+..++++..+|..|.||||+||.++|++|+..|.++++..|+
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It 412 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVT 412 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBC
T ss_pred HCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 55998864886027998089699999999999964899997679999997679998999999999999999984899669
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 98999999999829
Q 002754 648 TDDLLQAAQIEERG 661 (884)
Q Consensus 648 ~edi~~Ai~~~~~g 661 (884)
.+||..|++++..+
T Consensus 413 ~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 413 AEDFKQAKERVMKN 426 (437)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999987079
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=343.26 Aligned_cols=251 Identities=41% Similarity=0.688 Sum_probs=236.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCHHHH
Q ss_conf 67642234655863699999999986-01430010346634771799789999822578886633056346631220123
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 411 ~~~~~~l~~~~gl~~~v~~l~~iv~~-l~~~~l~~~~g~~i~~gilL~GppGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
+.+.+.|+++.|+++.+..+.+++.. +.++.+|...|..+|+|+||+||||||||++++++|++++.+++.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHCC
T ss_conf 59998966717859999999999999874999998679897876999899998499999999998599989984146205
Q ss_pred HHCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
Q ss_conf 22035411233278998836995788264788642027778998114899999998731164578964898225998878
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Ii~lDEid~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI~tTN~~~~l 569 (884)
.|+|.....++.+|..++...|||+||||+|.++..|.....+++.....+++.||..||++....+++||+|||+++.+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHH
T ss_conf 52017899999999999863896464204433333334478875368999999999983466677986999933990331
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 96677899533334579999666999999998129998700189998418999799999999999999999099855998
Q 002754 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (884)
Q Consensus 570 dpaLlrpgRfd~~I~i~~P~~eer~~Il~~~l~~~~~~~~~~l~~lA~~t~G~s~adL~~lv~~A~~~A~~~~~~~It~e 649 (884)
||+|+||||||+.|+|++|+.++|.+||+.|++..+...++++..+|..|.||+|+||.++|++|+..|.++++..|+.+
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~ 413 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPD 413 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 89782777102001359969999999999986589998645899999768999999999999999999998699877999
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999999829
Q 002754 650 DLLQAAQIEERG 661 (884)
Q Consensus 650 di~~Ai~~~~~g 661 (884)
||..|++.+...
T Consensus 414 d~~~Al~~v~~~ 425 (437)
T 4b4t_L 414 DLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
T ss_conf 999999998750
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=342.72 Aligned_cols=251 Identities=39% Similarity=0.657 Sum_probs=234.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCHHH
Q ss_conf 467642234655863699999999986-0143001034663477179978999982257888663305634663122012
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (884)
Q Consensus 410 ~~~~~~~l~~~~gl~~~v~~l~~iv~~-l~~~~l~~~~g~~i~~gilL~GppGtGKTtLakaLA~el~~~~~~is~s~~~ 488 (884)
...+...|+++.|+++.+..+.+.+.. +.++..|...|...|+|+||+||||||||++|+++|++++.+++.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 88979986760957999999999999997499999867999887268779499988999999999959988998644643
Q ss_pred HHHCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 32203541123327899883699578826478864202777899811489999999873116457896489822599887
Q 002754 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (884)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Ii~lDEid~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI~tTN~~~~ 568 (884)
..|+|.....++.+|..++...|||+||||+|.++..|.....++......+++.||..||++....+|+||+|||+++.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH
T ss_conf 13456389999999999986199089603325665225778888746999999999997136688899899994899223
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 89667789953333457999966699999999812999870018999841899979999999999999999909985599
Q 002754 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (884)
Q Consensus 569 ldpaLlrpgRfd~~I~i~~P~~eer~~Il~~~l~~~~~~~~~~l~~lA~~t~G~s~adL~~lv~~A~~~A~~~~~~~It~ 648 (884)
+||+|+||||||+.|+|++|+.++|.+||+.+++..+...++++..+|..|.||+|+||.++|++|+..|.++++..|+.
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~ 412 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKH 412 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred CCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 39967157740389980895999999999998568999876799999986899899999999999999999869987699
Q ss_pred HHHHHHHHHHHC
Q ss_conf 899999999982
Q 002754 649 DDLLQAAQIEER 660 (884)
Q Consensus 649 edi~~Ai~~~~~ 660 (884)
+||..|+..+..
T Consensus 413 ~Df~~Al~~v~~ 424 (434)
T 4b4t_M 413 EDFVEGISEVQA 424 (434)
T ss_dssp HHHHHHHHSCSS
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999737
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=336.66 Aligned_cols=251 Identities=37% Similarity=0.603 Sum_probs=234.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCHHH
Q ss_conf 467642234655863699999999986-0143001034663477179978999982257888663305634663122012
Q 002754 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (884)
Q Consensus 410 ~~~~~~~l~~~~gl~~~v~~l~~iv~~-l~~~~l~~~~g~~i~~gilL~GppGtGKTtLakaLA~el~~~~~~is~s~~~ 488 (884)
...+++.|++++|+++.+..+.+.+.. +.++..|...|...|+|+||+||||||||++++++|++++.+++.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 78999988885169999999999999987399999867999886588889899888999999999867996999330443
Q ss_pred HHHCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 32203541123327899883699578826478864202777899811489999999873116457896489822599887
Q 002754 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (884)
Q Consensus 489 ~~~~g~~~~~l~~lf~~a~~~~p~Ii~lDEid~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI~tTN~~~~ 568 (884)
+.|+|.....++.+|..++...|||+|+||+|.++..|.....+++.....+++.||..||++....+++||+|||+++.
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH
T ss_conf 14546059999999999997399746300224330355678788871899999999998438787799799996198155
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 896677899533334579-9996669999999981299987001899984189997999999999999999990998559
Q 002754 569 LDPALVRPGRFDRKIFIP-KPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 647 (884)
Q Consensus 569 ldpaLlrpgRfd~~I~i~-~P~~eer~~Il~~~l~~~~~~~~~~l~~lA~~t~G~s~adL~~lv~~A~~~A~~~~~~~It 647 (884)
+||+|+||||||+.|+|| +|+.++|..||+.+++..+...++++..+|..|.||+|+||.++|++|+..|.++++..|+
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~ 403 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVIL 403 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 69666368751599981999999999999999855799996358999997779988999999999999999987998779
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9899999999982
Q 002754 648 TDDLLQAAQIEER 660 (884)
Q Consensus 648 ~edi~~Ai~~~~~ 660 (884)
.+||..|+..+..
T Consensus 404 ~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 404 QSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999997617
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=322.99 Aligned_cols=230 Identities=41% Similarity=0.748 Sum_probs=181.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 7642234655863699999999986-014300103466347717997899998225788866330563466312201232
Q 002754 412 GVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (884)
Q Consensus 412 ~~~~~l~~~~gl~~~v~~l~~iv~~-l~~~~l~~~~g~~i~~gilL~GppGtGKTtLakaLA~el~~~~~~is~s~~~~~ 490 (884)
.+.+.++++.|+.+++..+.+++.. +.++..|.+.|...++|+||+||||||||.+++++|++++.+++.++.+++.+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCC
T ss_conf 78878888178899999999999756668999971488888607986687789639999999983896687424112103
Q ss_pred HCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 20354112332789988369957882647886420277789981148999999987311645789648982259988789
Q 002754 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (884)
Q Consensus 491 ~~g~~~~~l~~lf~~a~~~~p~Ii~lDEid~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI~tTN~~~~ld 570 (884)
|+|.....++.+|+.|+...|||+||||+|.+...|+...++++...+.++++||.+||++....+|+||++||+++.+|
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD 630 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCC
T ss_conf 34368999999999999729963520425677631588888986699999999999974878779989999379804389
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 66778995333345799996669999999981299987001899984189997999999999999999990
Q 002754 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (884)
Q Consensus 571 paLlrpgRfd~~I~i~~P~~eer~~Il~~~l~~~~~~~~~~l~~lA~~t~G~s~adL~~lv~~A~~~A~~~ 641 (884)
|+++|||||++.|+|++|+.++|.+||+.++++.+...++++..+|..|.||||+||.++|++|+..|.++
T Consensus 631 ~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp HHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 84717785507999799699999999999856799987789999997689999999999999999999999
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=302.03 Aligned_cols=247 Identities=40% Similarity=0.673 Sum_probs=225.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCHHHH
Q ss_conf 67642234655863699999999986-01430010346634771799789999822578886633056346631220123
Q 002754 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (884)
Q Consensus 411 ~~~~~~l~~~~gl~~~v~~l~~iv~~-l~~~~l~~~~g~~i~~gilL~GppGtGKTtLakaLA~el~~~~~~is~s~~~~ 489 (884)
....+.|+++.|+++.+..+++++.. +.++.+|..+|..+|+|+||+||||||||+|++++|++++.+++.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHC
T ss_conf 58999903514999999999999998751989886358999975897798999889999999997198399997379543
Q ss_pred HHCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
Q ss_conf 22035411233278998836995788264788642027778998114899999998731164578964898225998878
Q 002754 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (884)
Q Consensus 490 ~~~g~~~~~l~~lf~~a~~~~p~Ii~lDEid~l~~~r~~~~~sgge~~~~~l~~LL~~ld~~~~~~~viVI~tTN~~~~l 569 (884)
.|+|.....++.+|+.++...|||+||||+|.+++.+.. ++++..+.++++|+..||++..+.+|+||++||+++.+
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~---~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTT---CCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCC---CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHC
T ss_conf 331678999999999999729929998510023344577---88739999999999997466666987999966980326
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-------
Q ss_conf 9667789953333457999966699999999812999870018999841899979999999999999999909-------
Q 002754 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG------- 642 (884)
Q Consensus 570 dpaLlrpgRfd~~I~i~~P~~eer~~Il~~~l~~~~~~~~~~l~~lA~~t~G~s~adL~~lv~~A~~~A~~~~------- 642 (884)
||+|+|||||++.|+++.|+.++|.+||+.+++......++++..+|..|.||+++||..+|++|+..|.++.
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98885786361688668979899999999985689988643899999756899899999999999999998414512000
Q ss_pred ----------CCCCCHHHHHHHHHHHHC
Q ss_conf ----------985599899999999982
Q 002754 643 ----------RTEITTDDLLQAAQIEER 660 (884)
Q Consensus 643 ----------~~~It~edi~~Ai~~~~~ 660 (884)
...++.+|+..|+..+..
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSC
T ss_pred CCCCCHHHHCCCEEEHHHHHHHHHHCCC
T ss_conf 1332045522556519999999972878
Done!