Query 002756
Match_columns 884
No_of_seqs 443 out of 3293
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 18:52:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002756.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1469-1472//hhsearch_pdb/002756hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 1.0 1 1 448.8 23.1 350 480-884 23-425 (520)
2 2a2c_A N-acetylgalactosamine k 1.0 1 1 356.6 28.4 336 480-884 39-387 (478)
3 1pie_A Galactokinase; galactos 1.0 1 1 337.5 26.1 301 480-884 31-332 (419)
4 1wuu_A Galactokinase; galactos 1.0 1 1 327.2 24.0 297 479-884 19-317 (399)
5 3k85_A D-glycero-D-manno-hepto 1.0 1 1 294.7 17.8 197 497-739 3-211 (357)
6 2cz9_A Probable galactokinase; 1.0 1 1 293.7 21.0 267 498-884 2-268 (350)
7 1kvk_A MK, mevalonate kinase; 1.0 1 1 266.1 12.9 211 496-739 4-244 (395)
8 3k17_A LIN0012 protein; protei 1.0 1 1 261.9 23.8 192 496-739 5-227 (365)
9 2pg9_A Phosphomevalonate kinas 1.0 1 1 248.8 21.7 188 497-739 3-216 (337)
10 4amg_A Snogd; transferase, pol 1.0 1 1 245.0 22.7 340 12-370 19-398 (400)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=1.00 E-value=1 Score=448.77 Aligned_cols=350 Identities=19% Similarity=0.288 Sum_probs=246.6
Q ss_pred HHHHHHHHHCCCCCCCCCEEEECCCCEECCCCCCCCCCCEEECCCCCCCEEEEEEEC--CCCHHHHHHHHHHCCCCCCCC
Q ss_conf 899999985059987660799657410001363223897131321255259999845--860344666653104789999
Q 002756 480 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKI--SPSKQRLWKHALARHNDKGQG 557 (884)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~v~~~--~~~~~~~~~~~~~~~~~~~~~ 557 (884)
.......|...||.++ .++++||||||||||||||+||+||||||+++|+++++++ +|++
T Consensus 23 ~~~l~~~F~~~fg~~p-~~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~~d~~----------------- 84 (520)
T 3v2u_C 23 HLAVVDAFFQTYHVKP-DFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPS----------------- 84 (520)
T ss_dssp HHHHHHHHHHHHSSCC-SEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCCSSCE-----------------
T ss_pred HHHHHHHHHHHHCCCC-CEEEECCEEEEEECCCEEECCCEEEEEEEECCEEEEEEECCCCCCE-----------------
T ss_conf 9999999999868998-7799766058985467435797799999605569999954689987-----------------
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH---HHHH------CCCC
Q ss_conf 998089985356668999853357874236999752664301258999872578999999999---9992------9967
Q 002756 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVL---MTEL------GVRF 628 (884)
Q Consensus 558 ~~~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~g~i~~~---~~~~------g~~~ 628 (884)
+++.|.+..+. ...|++++++ .++.++ .....|++|++|++..+ +++. |...
T Consensus 85 ----i~i~S~~~~~~--~~~~~l~~~~-----~~~~i~--------~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~ 145 (520)
T 3v2u_C 85 ----ITLTNADPKFA--QRKFDLPLDG-----SYMAID--------PSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPL 145 (520)
T ss_dssp ----EEEEESSTTSC--CEEEECCTTC-----CCCCCC--------TTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCC
T ss_pred ----EEEEECCCCCC--CEEEEECCCC-----CCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf ----99998888887--3599832675-----544467--------6653178899999999999998622333346778
Q ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEE
Q ss_conf 997899998189899998647999999999999993---99999999999999999837089998220135314887708
Q 002756 629 EDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAH---GLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKL 705 (884)
Q Consensus 629 ~~g~~i~i~s~iP~g~GLsSSAAl~va~~~al~~~~---~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~a~~~g~~~~~ 705 (884)
.||++.|.|+||+|+|| |||++||++.|++.++ +..+++.+++++|+++|+ ++|.+||+|||++|++|++|++
T Consensus 146 -~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~-~vG~~~G~mDQ~as~~G~~g~~ 221 (520)
T 3v2u_C 146 -VGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEH-YVGVNNGGMDQATSVYGEEDHA 221 (520)
T ss_dssp -CCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGG-GGTCCCCSHHHHHHHHCBTTBE
T ss_pred -CCEEEEEECCCCCCCCH--HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHCCCCEE
T ss_conf -76699996578999877--9999999999999974216999899999999999999-8689975362999985788859
Q ss_pred EEEEECC-CCEEEEEECCC----CEEEEEEECCC---CCCCCCCCCCCHHHHHHHCHHHHHHHHCCCCCCCCCCCC----
Q ss_conf 9998228-73137631499----81899995999---543378785302557631435587532044887778999----
Q 002756 706 LAMVCQP-AELLGVVEIPS----HIRFWGIDSGI---RHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSN---- 773 (884)
Q Consensus 706 ~~~d~~~-~~~~~~i~~p~----~~~~vi~ds~~---~~~~~~~~y~~~r~~~~~~~~~~~~~a~~~l~~~~~~~~---- 773 (884)
+++||++ +++ +.+++|+ ++.|+|+||++ +|.+++++||.||++|..+.++|. ++++...
T Consensus 222 l~id~~~~l~~-~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~--------~~~g~~~~~~~ 292 (520)
T 3v2u_C 222 LYVEFRPKLKA-TPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALA--------TRYSVALPSHK 292 (520)
T ss_dssp EEEECSSSCEE-EEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHH--------HHTTBCCCCCC
T ss_pred EEEECCCCCEE-EEEECCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--------HHHCCCCCCCC
T ss_conf 99975787636-8962787667984899998998645254564233699999999999998--------86087632232
Q ss_pred ------CCCCCCCCHHHHH------------HHHHHHHHHHHHCCCCHHHHH---HHHC-CCCC--CCCHHHHHHHHCCC
Q ss_conf ------9999983014577------------788632223330589223444---3200-1464--56045776341799
Q 002756 774 ------GLNNIEPEVDGVE------------LLEAEASLDYLCNLSPHRFEA---LYAK-NIPE--SIVGEEFSKNYGDH 829 (884)
Q Consensus 774 ------~~~~~~~~~~~~~------------~l~~~~~~~~l~~~~~~~~~~---~~~~-~~~~--~~~~~~~~~~~~~~ 829 (884)
....++..+.... .......++.+.++..+.++. .|+. ++.+ .++.++|.+.|++.
T Consensus 293 ~~~~~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~ 372 (520)
T 3v2u_C 293 DNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTT 372 (520)
T ss_dssp SCSSCTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 32223434177776766531012222212211257777999988889875330245558999876457756654320234
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--C-HHHHHHHHHHHHCC
Q ss_conf 9970430687300123322563113452999999994159--9-68999999853239
Q 002756 830 NDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAA--S-DDQLTSLGELLYQL 884 (884)
Q Consensus 830 ~~~~~~~~~~~~~~~~~ra~Hv~~E~~RV~~~~~~l~~~~--~-~~~~~~lG~lm~~s 884 (884)
+++ .++.|.++|||+|||+||.||++|+++|++++ + +++++.||+||++|
T Consensus 373 -~~~----~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~s 425 (520)
T 3v2u_C 373 -FPV----RFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNES 425 (520)
T ss_dssp -SCE----EESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHH
T ss_pred -CCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf -531----11108999999999999999999999997477555335799999999987
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=1.00 E-value=1 Score=356.57 Aligned_cols=336 Identities=20% Similarity=0.274 Sum_probs=239.4
Q ss_pred HHHHHHHHHCCCCCCCCCEEEECCCCEECCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89999998505998766079965741000136322389713132125525999984586034466665310478999999
Q 002756 480 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPM 559 (884)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (884)
...-...|...||.++ .++++||||+||+|||+||+|+.||++||++++++++++++++.
T Consensus 39 ~~~~~~~f~~~fg~~~-~~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~~~~~------------------- 98 (478)
T 2a2c_A 39 LLKLKEMFNSKFGSIP-KFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYA------------------- 98 (478)
T ss_dssp HHHHHHHHHHHHSSCC-SEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECSSSC-------------------
T ss_pred HHHHHHHHHHHHCCCC-CEEEEECEEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCE-------------------
T ss_conf 9999999999858998-78999232898723341147976898872246899999889986-------------------
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 80899853566689998533578742369997526643012589998725789999999999992996799789999818
Q 002756 560 PVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSA 639 (884)
Q Consensus 560 ~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~ 639 (884)
+++.+.+.++ ..|+++++++. . ......|.||+++++..+++..+.....|+++.+.|+
T Consensus 99 --i~i~~~~~~~----~~~~~~~~~l~-------~--------~~~~~~~~n~v~~a~~~v~~~~~~~~~~g~~i~i~s~ 157 (478)
T 2a2c_A 99 --LQLANTNPLY----PDFSTSANNIQ-------I--------DKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGN 157 (478)
T ss_dssp --EEEEESSTTS----CCEEECCCCC-----------------CCSSCCHHHHHHHHHHHHHHHTTCCSCCCEEEEEEEC
T ss_pred --EEEEECCCCC----CCEECCCHHCC-------C--------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf --9999889887----60442410025-------6--------7776458899999999999997206998669999898
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEEECCCCEEEEE
Q ss_conf 98999986479999999999999939999999999999999983708999822013531488770899982287313763
Q 002756 640 VPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVV 719 (884)
Q Consensus 640 iP~g~GLsSSAAl~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~a~~~g~~~~~~~~d~~~~~~~~~i 719 (884)
||+|+|||||||++||++.|++.+++..+++.+++++|+++|+ ++|.+||+|||+++++|++|.+++++|++... .++
T Consensus 158 IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~-~~g~~~g~~D~~a~~~G~~g~~~~i~f~~~~~-~~~ 235 (478)
T 2a2c_A 158 IPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKLIEFSPLRA-TDV 235 (478)
T ss_dssp SCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHG-GGTCCCCSHHHHHHHHCBTTBEEEEETTTTEE-EEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHCCCCCEEEEECCCCCE-EEE
T ss_conf 9999884389999999999999973899899999999999996-45999851789998754689589997578805-773
Q ss_pred ECCCCEEEEEEECCCCCCC-CCCCCCCHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1499818999959995433-787853025576314355875320448877789999999983014577788632223330
Q 002756 720 EIPSHIRFWGIDSGIRHSV-GGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLC 798 (884)
Q Consensus 720 ~~p~~~~~vi~ds~~~~~~-~~~~y~~~r~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 798 (884)
++|+++.|+|+||++++++ .+++||.||.+|....+++.. +.+..+. +.+ .+..++ ...
T Consensus 236 ~~~~~~~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~~~L~~--------~~~~~~~-~~~-----~l~d~~------~~~ 295 (478)
T 2a2c_A 236 KLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAK--------YKSLQWD-KVL-----RLEEVQ------AKL 295 (478)
T ss_dssp CCCTTEEEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHHHH--------HTTCCTT-TCC-----CHHHHH------HHH
T ss_pred CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH--------HHCCCCC-CCC-----HHHHHH------HHH
T ss_conf 38998289999389865434554067899999999999876--------5166632-211-----287643------210
Q ss_pred CCCCHHHHHHHHCCCC----------C--CCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5892234443200146----------4--560457763417999970430687300123322563113452999999994
Q 002756 799 NLSPHRFEALYAKNIP----------E--SIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLT 866 (884)
Q Consensus 799 ~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~Hv~~E~~RV~~~~~~l~ 866 (884)
.....++-......+. + .++.++|.+.|.+.. ++ ..++|.+++|++|+++|+.||.+++.+|+
T Consensus 296 ~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~-~~----~~~~~~~~~ra~h~~~e~~rv~~~~~aL~ 370 (478)
T 2a2c_A 296 GISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPN-TQ----DVLIFKLYQRAKHVYSEAARVLQFKKICE 370 (478)
T ss_dssp TCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGG-GT----TCCCBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCCC-CC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11288999999875164546599999875765887776304533-21----10168999999999989999999999997
Q ss_pred CCCCHHHHHHHHHHHHCC
Q ss_conf 159968999999853239
Q 002756 867 AAASDDQLTSLGELLYQL 884 (884)
Q Consensus 867 ~~~~~~~~~~lG~lm~~s 884 (884)
+. +++|++.||+||++|
T Consensus 371 ~~-~~~d~~~lg~lm~~s 387 (478)
T 2a2c_A 371 EA-PENMVQLLGELMNQS 387 (478)
T ss_dssp HC-CTTHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHH
T ss_conf 52-203799999999998
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=1.00 E-value=1 Score=337.52 Aligned_cols=301 Identities=24% Similarity=0.354 Sum_probs=232.9
Q ss_pred HHHHHHHHHCCCCCCCCCEEEECCCCEECCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89999998505998766079965741000136322389713132125525999984586034466665310478999999
Q 002756 480 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPM 559 (884)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (884)
.......|...||.++..+.++||||+||+|||+||+|+.+|++||++++++.+++++++.
T Consensus 31 ~~~~~~~f~~~~g~~~~~~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~~~~~------------------- 91 (419)
T 1pie_A 31 LSALTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKK------------------- 91 (419)
T ss_dssp HHHHHHHHHHHHSCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSE-------------------
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCEEECCCEEEEEEECCCEEEEEEECCCCE-------------------
T ss_conf 9999999999858997639999657899715552107977999987054999999899997-------------------
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 80899853566689998533578742369997526643012589998725789999999999992996799789999818
Q 002756 560 PVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSA 639 (884)
Q Consensus 560 ~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~ 639 (884)
+++.+.+.+ .. ...+++++++. ..+...|.||+++++..+. +.+..+..|+++.+.|+
T Consensus 92 --i~i~~~~~~--~~-~~~~~~~~~~~----------------~~~~~~~~n~v~~~~~~l~-~~g~~~~~g~~i~i~s~ 149 (419)
T 1pie_A 92 --VKLYSENFP--KL-GVIEFDLDEVE----------------KKDGELWSNYVKGMIVMLK-GAGYEIDKGFELLIKGE 149 (419)
T ss_dssp --EEEEETTCG--GG-CCEEEETTCTT----------------SCCTTCTHHHHHHHHHHHH-HTTCCCCSCEEEEEEEC
T ss_pred --EEEEECCCC--CC-CEEEEECCCCC----------------CCCCCCHHHHHHHHHHHHH-HHCCCCCCCEEEEEECC
T ss_conf --999988888--76-52677644456----------------7777689999999999999-81898899879999888
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEEECCCCEEEEE
Q ss_conf 98999986479999999999999939999999999999999983708999822013531488770899982287313763
Q 002756 640 VPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVV 719 (884)
Q Consensus 640 iP~g~GLsSSAAl~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~a~~~g~~~~~~~~d~~~~~~~~~i 719 (884)
||+|+|||||||++||++.|++.+++..+++.+++++|+++|++++|.|||+|||+++++|+.+.++++++++..+ +++
T Consensus 150 IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~~~-~~l 228 (419)
T 1pie_A 150 IPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKY-EMV 228 (419)
T ss_dssp SCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCE-EEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCCE-EEE
T ss_conf 9999880579999999999999984799999999999999999853898640418999854678599963699826-895
Q ss_pred ECC-CCEEEEEEECCCCCCCCCCCCCCHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 149-9818999959995433787853025576314355875320448877789999999983014577788632223330
Q 002756 720 EIP-SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLC 798 (884)
Q Consensus 720 ~~p-~~~~~vi~ds~~~~~~~~~~y~~~r~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 798 (884)
++| +++.|+++++++++++.+++||.||.+|...+ +.+++...++.|+
T Consensus 229 ~~~~~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~-------------------------------~~l~~~~~v~~l~ 277 (419)
T 1pie_A 229 PVELRDYDIVIMNTNKPRALTESKYNERFAETREAL-------------------------------KRMQTRLDIQSLG 277 (419)
T ss_dssp ECCCTTEEEEEEECCCCCCTTCHHHHHHHHHHHHHH-------------------------------HHHHHHCCCSSGG
T ss_pred ECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH-------------------------------HHHHHCCCCCCHH
T ss_conf 069888389999789866456216799999999999-------------------------------9974234657445
Q ss_pred CCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 58922344432001464560457763417999970430687300123322563113452999999994159968999999
Q 002756 799 NLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLG 878 (884)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~Hv~~E~~RV~~~~~~l~~~~~~~~~~~lG 878 (884)
++.++.++... ..+++ ...++|+.|++.|+.||.+++.+|+++ |++.||
T Consensus 278 ~~~~~~~~~~~-~~l~~--------------------------~~~~~~~~~~v~e~~r~~~~~~al~~~----d~~~lg 326 (419)
T 1pie_A 278 ELSNEEFDANT-DLIGD--------------------------ETLIKRARHAVYENNRTKIAQKAFVAG----NLTKFG 326 (419)
T ss_dssp GCCHHHHHHTG-GGTCC--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHT----CHHHHH
T ss_pred HCCHHHHHHHH-HHCCC--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHH
T ss_conf 59999999887-31686--------------------------899999999987889999999998729----999999
Q ss_pred HHHHCC
Q ss_conf 853239
Q 002756 879 ELLYQL 884 (884)
Q Consensus 879 ~lm~~s 884 (884)
++|++|
T Consensus 327 ~lm~~~ 332 (419)
T 1pie_A 327 ELLNAS 332 (419)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=1.00 E-value=1 Score=327.21 Aligned_cols=297 Identities=24% Similarity=0.328 Sum_probs=226.9
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEECCCCEECCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 88999999850599876607996574100013632238971313212552599998458603446666531047899999
Q 002756 479 RQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGP 558 (884)
Q Consensus 479 ~~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (884)
........|...||.++ .+.++||||+||+|||+||+|+.+|++||++++++++++++++.
T Consensus 19 ~~~~~~~~f~~~~~~~~-~~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~~~~~------------------ 79 (399)
T 1wuu_A 19 LLAEARRAFREEFGAEP-ELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGL------------------ 79 (399)
T ss_dssp HHHHHHHHHHHHHSSCC-SEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCE------------------
T ss_pred HHHHHHHHHHHHHCCCC-CEEEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEEEECCCCE------------------
T ss_conf 99999999999858998-88999201698812262207988885770255999999999996------------------
Q ss_pred CCEEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 980899853566689998-5335787423699975266430125899987257899999999999929967997899998
Q 002756 559 MPVLQIVSYGSELSNRGP-TFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVS 637 (884)
Q Consensus 559 ~~~i~i~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~ 637 (884)
+++.+.+.+ .... .++++++.. ..+ ...+...|.||+++++..+ .+... .|+++.+.
T Consensus 80 ---i~i~~~~~~--~~~~~~~~~~~~~~----~~~---------~~~~~~~~~n~v~~a~~~l---~~~~~-~g~~i~i~ 137 (399)
T 1wuu_A 80 ---VSLLTTSEG--ADEPQRLQFPLPTA----QRS---------LEPGTPRWANYVKGVIQYY---PAAPL-PGFSAVVV 137 (399)
T ss_dssp ---EEEEECCSS--SCSCSEEEEECCCS----SCC---------CCCCSSGGGHHHHHHHHHC---SSSCC-CEEEEEEE
T ss_pred ---EEEEECCCC--CCCCCCEEEECCCC----CCC---------CCCCCCCHHHHHHHHHHHH---CCCCC-CCEEEEEE
T ss_conf ---999988888--76543047733733----234---------5667887899999999994---47998-87699997
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEEECCCCEEE
Q ss_conf 18989999864799999999999999399999999999999999837089998220135314887708999822873137
Q 002756 638 SAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLG 717 (884)
Q Consensus 638 s~iP~g~GLsSSAAl~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~a~~~g~~~~~~~~d~~~~~~~~ 717 (884)
|+||+|+|||||||++||++.|++.+++..+++.+++++|+++|+.++|.|||+|||.++++|+.+.++++++++..+ +
T Consensus 138 s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~-~ 216 (399)
T 1wuu_A 138 SSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLET-S 216 (399)
T ss_dssp ECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCE-E
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCCE-E
T ss_conf 889999883179999999999999982899899999999999999755898740889999856688089985689856-7
Q ss_pred EEECC-CCEEEEEEECCCCCCCCCCCCCCHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 63149-98189999599954337878530255763143558753204488777899999999830145777886322233
Q 002756 718 VVEIP-SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDY 796 (884)
Q Consensus 718 ~i~~p-~~~~~vi~ds~~~~~~~~~~y~~~r~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 796 (884)
++++| +++.++++++++++++..+.||.||.+|...+ ..|. .+.
T Consensus 217 ~~~~~~~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~--------~~l~---------------------------~~~ 261 (399)
T 1wuu_A 217 LVPLSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVA--------RALG---------------------------KES 261 (399)
T ss_dssp EEECCCSSEEEEEEEEEEEC--CTTTHHHHHHHHHHHH--------HHTT---------------------------CSS
T ss_pred EECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH--------HHHC---------------------------HHH
T ss_conf 84478888699999799865555331799999999999--------9957---------------------------210
Q ss_pred HHCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 30589223444320014645604577634179999704306873001233225631134529999999941599689999
Q 002756 797 LCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTS 876 (884)
Q Consensus 797 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~Hv~~E~~RV~~~~~~l~~~~~~~~~~~ 876 (884)
++++.++.+.... ..+++ ..++|++|++.|+.|+.+++.+|+++ |++.
T Consensus 262 l~~~~~~~~~~~~-~~l~~---------------------------~~~~r~~~~~~e~~r~~~~~~al~~~----d~~~ 309 (399)
T 1wuu_A 262 LREVQLEELEAAR-DLVSK---------------------------EGFRRARHVVGEIRRTAQAAAALRRG----DYRA 309 (399)
T ss_dssp TTSCCHHHHTTGG-GGSCH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHTT----CHHH
T ss_pred HHCCCHHHHHHHH-HHCCH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHCC----CHHH
T ss_conf 2128999999988-64489---------------------------99999999972689999999998759----9999
Q ss_pred HHHHHHCC
Q ss_conf 99853239
Q 002756 877 LGELLYQL 884 (884)
Q Consensus 877 lG~lm~~s 884 (884)
||++|++|
T Consensus 310 lg~~m~~~ 317 (399)
T 1wuu_A 310 FGRLMVES 317 (399)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999998
No 5
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=294.69 Aligned_cols=197 Identities=17% Similarity=0.178 Sum_probs=158.4
Q ss_pred CEEEECCCCEECCCCCCCC------CCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf 0799657410001363223------8971313212552599998458603446666531047899999980899853566
Q 002756 497 IFVARAPGRLDVMGGIADY------SGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSE 570 (884)
Q Consensus 497 ~~~~~APGRv~L~GeH~Dy------~gg~vl~~ai~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~~~~ 570 (884)
+++++|||||||+|||+|| +||+||++||++++++++++++|+++++ .|.+
T Consensus 3 mi~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~~d~~i~i---------------------~s~~-- 59 (357)
T 3k85_A 3 LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEI---------------------NAYD-- 59 (357)
T ss_dssp CEEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSSEEEE---------------------EETT--
T ss_pred EEEEECCEEEEEECCCCCCCCHHHCCCCEEEEEEEECCEEEEEEECCCCEEEE---------------------EECC--
T ss_conf 89998866899804875671213017988999997473899999978986999---------------------9878--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHH
Q ss_conf 68999853357874236999752664301258999872578999999999999299679978999981898999986479
Q 002756 571 LSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSA 650 (884)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLsSSA 650 (884)
+.. ..++++.+ + .+..+|.||+++++..+. ..+.....||++.+.|+||.|+||||||
T Consensus 60 ~~~---~~~~~~~~------~------------~~~~~~~~~v~~~~~~l~-~~~~~~~~g~~i~i~~~iP~g~GLgSSa 117 (357)
T 3k85_A 60 AQC---CKSYLSMS------Q------------LEIDGEASLIKGVYNRII-RDYRLEPKSFKITTYNDAPAGSGLGTSS 117 (357)
T ss_dssp TTE---EEEEECCS------S------------CCCCSSSHHHHHHHHHHH-HHTTCCCCCEEEEEEESSCSSSSSCHHH
T ss_pred CCC---EEEEECCC------C------------CCCCCHHHHHHHHHHHHH-HHCCCCCCCEEEEEECCCCCCCCCHHHH
T ss_conf 995---59982663------2------------344666779999999999-8468888877999956899998856999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEEECCCCEEEEEECCCC------
Q ss_conf 99999999999993999999999999999998370899982201353148877089998228731376314998------
Q 002756 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSH------ 724 (884)
Q Consensus 651 Al~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~a~~~g~~~~~~~~d~~~~~~~~~i~~p~~------ 724 (884)
|++||++.|++.+++..+++.+++++|+++|+.++|.|||+|||+++++||.+.+.+.++++..+ +++++++.
T Consensus 118 a~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~~~~~~~~-~~l~~~~~~~~~l~ 196 (357)
T 3k85_A 118 TMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIV-NPLKMKRWIVDELE 196 (357)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEETTTEEEE-EEECCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCEEE-EEEECCHHHHHHCC
T ss_conf 99999999999986799899999999999999871599727889999847963999707995269-99734834555148
Q ss_pred EEEEEEECCCCCCCC
Q ss_conf 189999599954337
Q 002756 725 IRFWGIDSGIRHSVG 739 (884)
Q Consensus 725 ~~~vi~ds~~~~~~~ 739 (884)
..++|++|+.+|++.
T Consensus 197 ~~lvi~~t~~~~~a~ 211 (357)
T 3k85_A 197 SSMVLYFTGRSRSSA 211 (357)
T ss_dssp HTEEEECC-------
T ss_pred CEEEEEECCCCCCHH
T ss_conf 669999899962079
No 6
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=1.00 E-value=1 Score=293.70 Aligned_cols=267 Identities=23% Similarity=0.377 Sum_probs=209.8
Q ss_pred EEEECCCCEECCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 79965741000136322389713132125525999984586034466665310478999999808998535666899985
Q 002756 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (884)
Q Consensus 498 ~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (884)
++++|||||||+|||+||+|+.+|++||++++++.+++++++.+++. +.+ ... .
T Consensus 2 ~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~~~~~i~i~---------------------~~~--~~~---~ 55 (350)
T 2cz9_A 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGEVILYSE---------------------HFG--EER---K 55 (350)
T ss_dssp EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEESSEEEEET---------------------TTT--EEE---E
T ss_pred EEEEECCEEEEEECCHHHCCCEEEEEEEECEEEEEEEECCCCEEEEE---------------------ECC--CCC---C
T ss_conf 69995307887502730079779999850329999998799959999---------------------889--886---4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 33578742369997526643012589998725789999999999992996799789999818989999864799999999
Q 002756 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 657 (884)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLsSSAAl~va~~ 657 (884)
.++ ++. .+...|.||+++++..+ +..+... .|+++.+.|+||.|+|||||||+++|++
T Consensus 56 ~~~-l~~-------------------~~~~~~~~~~~~~~~~l-~~~~~~~-~g~~i~i~s~IP~g~GLGSSaA~~vA~~ 113 (350)
T 2cz9_A 56 FSL-NDL-------------------RKENSWIDYVKGIFWVL-KESDYEV-GGIKGRVSGNLPLGAGLSSSASFEVGIL 113 (350)
T ss_dssp ECT-TCC-------------------CCCSSTHHHHHHHHHHH-HHTTCCC-CEEEEEEECSCCTTSSSCHHHHHHHHHH
T ss_pred CCC-CCC-------------------CCCCCHHHHHHHHHHHH-HHCCCCC-CCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 021-478-------------------98776889999999999-8649988-8739999789998888452999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 99999939999999999999999983708999822013531488770899982287313763149981899995999543
Q 002756 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737 (884)
Q Consensus 658 ~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~a~~~g~~~~~~~~d~~~~~~~~~i~~p~~~~~vi~ds~~~~~ 737 (884)
.|++.+++..+++.+++++|+++|++++|+|||+|||+++++|+.+.++++|+++..+ +++++|+++.+++++++++++
T Consensus 114 ~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d~~~~~~-~~l~~~~~~~~vl~~~~~~~~ 192 (350)
T 2cz9_A 114 ETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDY-EYIPFPKDVSILVFYTGVRRE 192 (350)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEETTTCCE-EEEECCTTEEEEEEECSCC--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCCE-EEECCCCCCEEEEEECCCCCC
T ss_conf 9999983799999999999999999743898641428899861788599996699857-997079996899997999775
Q ss_pred CCCCCCCCHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
Q ss_conf 37878530255763143558753204488777899999999830145777886322233305892234443200146456
Q 002756 738 VGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESI 817 (884)
Q Consensus 738 ~~~~~y~~~r~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 817 (884)
+.+..|+.||.+|...+ +.++ ++.|+++.++++ ..+|+.
T Consensus 193 ~~t~~~~~r~~~~~~a~-------------------------------~~~~----~~~lr~~~~~~~-----~~l~~~- 231 (350)
T 2cz9_A 193 LASSEYAERKHIAEESL-------------------------------KILG----KGSSKEVREGEL-----SKLPPL- 231 (350)
T ss_dssp --CHHHHHHHHHHHHHH-------------------------------HHHT----CSCGGGCCGGGG-----GGSCHH-
T ss_pred CCCCHHHHHHHHHHHHH-------------------------------HHHC----HHHHHHCCHHHH-----HHCCHH-
T ss_conf 56236899999999999-------------------------------9967----422422899998-----637989-
Q ss_pred CHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 0457763417999970430687300123322563113452999999994159968999999853239
Q 002756 818 VGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQL 884 (884)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~Hv~~E~~RV~~~~~~l~~~~~~~~~~~lG~lm~~s 884 (884)
+++|..|++.|+.|+.++..+|+++ |++.||++|++|
T Consensus 232 --------------------------~~~~~~~~~~~~~~~~~~~~al~~~----d~~~lg~~~~~~ 268 (350)
T 2cz9_A 232 --------------------------HRKFFGYIVRENARVLEVRDALKEG----NVEEVGKILTTA 268 (350)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHH
T ss_conf --------------------------9899999964889999999999809----999999999999
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=1.00 E-value=1 Score=266.07 Aligned_cols=211 Identities=18% Similarity=0.205 Sum_probs=147.2
Q ss_pred CCEEEECCCCEECCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 60799657410001363223897131321255259999845860344666653104789999998089985356668999
Q 002756 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (884)
Q Consensus 496 ~~~~~~APGRv~L~GeH~Dy~gg~vl~~ai~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (884)
+.++++|||||||+|||+||+|++||++||++++++++++++++++++.+.+. . .
T Consensus 4 ~~~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~-----------~-~------------- 58 (395)
T 1kvk_A 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNV-----------G-I------------- 58 (395)
T ss_dssp SCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTT-----------T-E-------------
T ss_pred CCEEEEECEEEEEECCCEEEECCEEEEEEEECCEEEEEEECCCCEEEEECCCC-----------C-C-------------
T ss_conf 75899937179996678346797766617006589999977997489973787-----------8-4-------------
Q ss_pred CCCCCCCCCCCCC----CCC-----CCHHHHHCCCCCCCCCCHHHHH--HHH---HHHHHHHHCCC-CCCCEEEEEEECC
Q ss_conf 8533578742369----997-----5266430125899987257899--999---99999992996-7997899998189
Q 002756 576 PTFDMDLSDFMDE----GKP-----MSYEKAKKYFDTNPSQKWAAYV--AGT---ILVLMTELGVR-FEDSISMLVSSAV 640 (884)
Q Consensus 576 ~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~w~~y~--~g~---i~~~~~~~g~~-~~~g~~i~i~s~i 640 (884)
.++++++++... +.+ +..+.....-......+|.+|+ .++ +..+....+.. ...|+++.+.|+|
T Consensus 59 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~i 137 (395)
T 1kvk_A 59 -KQVWDVATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSEL 137 (395)
T ss_dssp -EEEEEHHHHHTSCC----------------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESS
T ss_pred -EEEEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf -2787767602233034555654322689999998874245643113677999999999997352157888799998059
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCC-----CCC-------H---HHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEE
Q ss_conf 89999864799999999999999399-----999-------9---99999999999837089998220135314887708
Q 002756 641 PEGKGVSSSASVEVASMSAIAAAHGL-----NIH-------P---RDLALLCQKVENHIVGAPCGVMDQMASACGEANKL 705 (884)
Q Consensus 641 P~g~GLsSSAAl~va~~~al~~~~~~-----~l~-------~---~~la~~a~~~E~~~~G~~~G~mDq~a~~~g~~~~~ 705 (884)
|.|+|||||||++||++.|++.+++. .++ + .+++++|+.+|+.++|.+||+ ||.++++|+ +
T Consensus 138 P~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D~~~~~~Gg---~ 213 (395)
T 1kvk_A 138 PPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-DNSVSTWGG---A 213 (395)
T ss_dssp CTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-HHHHHHHCS---E
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCC-CHHHHHHCC---E
T ss_conf 988885289999999999999982756664334533344450369999999998520673688870-467743155---2
Q ss_pred EEEEECCCCEEEEEECCCCEEEEEEECCCCCCCC
Q ss_conf 9998228731376314998189999599954337
Q 002756 706 LAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (884)
Q Consensus 706 ~~~d~~~~~~~~~i~~p~~~~~vi~ds~~~~~~~ 739 (884)
+++ ++..+ +++++++++.|+++++++++++.
T Consensus 214 ~~~--~~~~~-~~l~~~~~~~~vl~~~~~~~~T~ 244 (395)
T 1kvk_A 214 LRY--QQGKM-SSLKRLPALQILLTNTKVPRSTK 244 (395)
T ss_dssp EEE--SSSCE-EECSCCCCEEEEEEECCCCCCHH
T ss_pred EEE--CCCCC-EECCCCCCCEEEEEECCCCCCHH
T ss_conf 797--07984-02368998479999899988669
No 8
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=1.00 E-value=1 Score=261.92 Aligned_cols=192 Identities=18% Similarity=0.229 Sum_probs=149.2
Q ss_pred CCEEEECCCCEECCCCCCCCC-CCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 607996574100013632238-9713132125525999984586034466665310478999999808998535666899
Q 002756 496 EIFVARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNR 574 (884)
Q Consensus 496 ~~~~~~APGRv~L~GeH~Dy~-gg~vl~~ai~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~ 574 (884)
.+++++|||||+|||||+||+ |++||++||+++++++++++++.. |.|.+ +..
T Consensus 5 ~~i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~~~~~-----------------------i~s~~--~~~- 58 (365)
T 3k17_A 5 NKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNE-----------------------LWIPH--YEN- 58 (365)
T ss_dssp CCEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCE-----------------------EECTT--CSS-
T ss_pred EEEEEEECCEEEEECCCEEECCCCEEEEEECCCCEEEEEEECCCCE-----------------------EEECC--CCC-
T ss_conf 6899995516999524578069987999982384899999779867-----------------------99568--886-
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHH---HHCCCCCCCEEEEEEECCCC----CCCCC
Q ss_conf 985335787423699975266430125899987257899999999999---92996799789999818989----99986
Q 002756 575 GPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVRFEDSISMLVSSAVPE----GKGVS 647 (884)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~---~~g~~~~~g~~i~i~s~iP~----g~GLs 647 (884)
.++++++.. + ..+...| +|++++++.+.+ ..|... .||++.|.|+||. ++|||
T Consensus 59 --~~~~~~~~~------~----------~~~~~~~-~yv~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~~g~~~GLg 118 (365)
T 3k17_A 59 --PVSWPIGGE------L----------KPDGEHW-TFTAEAINIATTFLKSEGIEL-TPVKMVIETELIDQSGAKYGLG 118 (365)
T ss_dssp --CBCCCTTSC------C----------CCSCGGG-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEEESSBCTTSCBCSSC
T ss_pred --CEEEECCCC------C----------CCCCCHH-HHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCCCCCCCCCC
T ss_conf --236640567------7----------7777757-999999999999998639998-8879999747998788887510
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEE-EC---------------
Q ss_conf 47999999999999993999999999999999998370899982201353148877089998-22---------------
Q 002756 648 SSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV-CQ--------------- 711 (884)
Q Consensus 648 SSAAl~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~a~~~g~~~~~~~~d-~~--------------- 711 (884)
||||++||++.|++.+++..+++.+++++|+.+|+.++| ++|+|||+++++|+ ++++. +.
T Consensus 119 SSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g-~~~g~D~~~~~~Gg---~~~~~~~~~~~~~~~~~~~~l~~ 194 (365)
T 3k17_A 119 SSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQG-NGSCGDIASCMYGG---WIAYTTFDQEWVKHRLAYKSLEW 194 (365)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-SCCSHHHHHHHHCS---EEEEECCCHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CCCCCCHHHHHCCC---EEEEECCCHHHHHHHCCCCHHHH
T ss_conf 899999999999999847999999999999999998678-98741278776088---79993278788653201100566
Q ss_pred -------CCCEEEEEECCCCEEEEEEECCCCCCCC
Q ss_conf -------8731376314998189999599954337
Q 002756 712 -------PAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (884)
Q Consensus 712 -------~~~~~~~i~~p~~~~~vi~ds~~~~~~~ 739 (884)
...+ +++++|.+ .++++||++++++.
T Consensus 195 l~~~~w~~~~~-~~l~~~~~-~lll~~t~~~~sT~ 227 (365)
T 3k17_A 195 FMKEPWPMLQI-ETLEEPVP-TFSVGWTGTPVSTG 227 (365)
T ss_dssp HHHSCCTTCEE-EEECCCSS-EEEEEECSCCCCHH
T ss_pred HHCCCCCCCCE-EECCCCCC-CEEEEECCCCCCHH
T ss_conf 64267877603-66468855-37999789965459
No 9
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=1.00 E-value=1 Score=248.81 Aligned_cols=188 Identities=18% Similarity=0.111 Sum_probs=147.9
Q ss_pred CEEEECCCCEECCCCCC-CCCCCEEECCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 07996574100013632-23897131321255259999845860344666653104789999998089985356668999
Q 002756 497 IFVARAPGRLDVMGGIA-DYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (884)
Q Consensus 497 ~~~~~APGRv~L~GeH~-Dy~gg~vl~~ai~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (884)
++.++|||||||+|||+ ||+|++||++||+++++++++++++ + +|.|.. +
T Consensus 3 mi~~~aPgkv~L~GeH~v~y~G~~~l~~Ai~~~~~v~v~~~~~--~---------------------~i~s~~--~---- 53 (337)
T 2pg9_A 3 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDS--Y---------------------RIYSDM--F---- 53 (337)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSS--C---------------------EEEETT--S----
T ss_pred EEEEEECCEEEEECCCEEECCCCEEEEEECCCCEEEEEEECCC--E---------------------EEECCC--C----
T ss_conf 6999617348995235682599879999810659999996794--7---------------------996589--8----
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH---HCCCCCCCEEEEEEECCCCC---CCCCHH
Q ss_conf 853357874236999752664301258999872578999999999999---29967997899998189899---998647
Q 002756 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTE---LGVRFEDSISMLVSSAVPEG---KGVSSS 649 (884)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~g~i~~~~~~---~g~~~~~g~~i~i~s~iP~g---~GLsSS 649 (884)
...++. .+..+| +|+++++..+.+. .|... .||++.+.|+||.| +|||||
T Consensus 54 ---~~~~~~-------------------~~~~~~-~~v~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~g~k~GLgSS 109 (337)
T 2pg9_A 54 ---DFAVDL-------------------RPNPDY-SLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMEREGKKFGLGSS 109 (337)
T ss_dssp ---SSCBCS-------------------SCCTTT-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEECCSEETTEECSSCHH
T ss_pred ---CCEEEE-------------------CCCCCC-HHHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCCCCCCCCCHH
T ss_conf ---850463-------------------578772-799999999999998618998-88799997169999888622099
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEEEC------------------
Q ss_conf 99999999999999399999999999999999837089998220135314887708999822------------------
Q 002756 650 ASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQ------------------ 711 (884)
Q Consensus 650 AAl~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~mDq~a~~~g~~~~~~~~d~~------------------ 711 (884)
||++||++.|++.+++..+++.+++++|+++|. ++|.+||+|||+++++|+......+++.
T Consensus 110 aa~~va~~~al~~~~~~~l~~~~l~~la~~~E~-~~~~~~~~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (337)
T 2pg9_A 110 GSVVVLVVKALLALYNLSVDQNLLFKLTSAVLL-KRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERD 188 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-HTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCHHHHCCCC
T ss_conf 999999999999982899999999999999999-8589987799999880787999648867743220122034430466
Q ss_pred -CCCEEEEEECCCCEEEEEEECCCCCCCC
Q ss_conf -8731376314998189999599954337
Q 002756 712 -PAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (884)
Q Consensus 712 -~~~~~~~i~~p~~~~~vi~ds~~~~~~~ 739 (884)
+..+ +++++|.++.|++++|++++++.
T Consensus 189 ~~~~~-~~l~~~~~~~lvl~~~~~~~~T~ 216 (337)
T 2pg9_A 189 WGFSI-SQVKPTLECDFLVGWTKEVAVSS 216 (337)
T ss_dssp CCCEE-EECCCCSCCEEEEEECCCCCCHH
T ss_pred CCCCE-EEECCCCCCEEEEEECCCCCCHH
T ss_conf 66613-66047888659999889964469
No 10
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=1.00 E-value=1 Score=244.97 Aligned_cols=340 Identities=15% Similarity=0.066 Sum_probs=190.3
Q ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC---C-CCCC--
Q ss_conf 975089999407898320898999999999899929999389984453445799457520014778633---5-5434--
Q 002756 12 SSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQ---A-DALT-- 85 (884)
Q Consensus 12 ~m~~~~il~~v~g~G~GH~~r~~~La~~L~~rGHeVtvis~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~-~~~~-- 85 (884)
--+.|+||| ++.++.||++|+++|+++|++|||+|+|+++... ..... ....+.+......... . ....
T Consensus 19 ~~~~MRIL~-~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~---~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (400)
T 4amg_A 19 YFQSMRALF-ITSPGLSHILPTVPLAQALRALGHEVRYATGGDI---RAVAE-AGLCAVDVSPGVNYAKLFVPDDTDVTD 93 (400)
T ss_dssp --CCCEEEE-ECCSSHHHHGGGHHHHHHHHHTTCEEEEEECSST---HHHHT-TTCEEEESSTTCCSHHHHSCCC-----
T ss_pred CCCCCEEEE-ECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH---HHHHH-CCCEEEECCCCHHHHHHCCCCCCCCCC
T ss_conf 789981899-8998460899999999999987998999938635---66886-587357558863076630454544455
Q ss_pred --CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECC-CCHHHHHHHHCCCCEEEEECCCHH--HHHHHHHHHC
Q ss_conf --69588899999971041687699999998619983999989-713899999809939999457426--8886654201
Q 002756 86 --VDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIYAEYVMAA 160 (884)
Q Consensus 86 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~kpDlVI~d~-~~~~~~aA~~~~iP~V~is~~~~~--~~~~~~~~~~ 160 (884)
.........+...+............+.+.+++||+||+|. .+++..+|+.+++|.+.+...... ..+......
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~- 172 (400)
T 4amg_A 94 PMHSEGLGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGLGALIRR- 172 (400)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHH-
T ss_conf 3100234478999999999999999999999862998899776338999999980998224146654334420367899-
Q ss_pred CCCHHHHHHHHHHHC-CCCCEEEEC-CCC--CCCC---CCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 775378999999510-434247733-899--9889---998704327432358779689998719999983999984998
Q 002756 161 GHHHRSIVWQIAEDY-SHCEFLIRL-PGY--CPMP---AFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQ 233 (884)
Q Consensus 161 ~~~~~~~~~~i~~~y-~~~~~l~~~-~~~--~~~p---~~~~v~~vg~~~~~~~~~~~e~~~~l~~~~~~~~VlvS~Gs~ 233 (884)
............. ......... +.. ...| ..+........... .+.....+++..+++++|||++||.
T Consensus 173 --~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~v~vs~Gs~ 247 (400)
T 4amg_A 173 --AMSKDYERHGVTGEPTGSVRLTTTPPSVEALLPEDRRSPGAWPMRYVPYN---GGAVLPDWLPPAAGRRRIAVTLGSI 247 (400)
T ss_dssp --HTHHHHHHTTCCCCCSCEEEEECCCHHHHHTSCGGGCCTTCEECCCCCCC---CCEECCTTCSCCTTCCEEEECCCSC
T ss_pred --HHHHHHHHHCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf --99989998288755430011024674021047400257765676653334---6556751223347985799968860
Q ss_pred CCH-------HHHHHHHCCCCCEEEE-ECCCCC----CCCCCEEECCCCCCHHHHHHHCCEEEECCCHHHHHHHHHCCCC
Q ss_conf 863-------6478762899949999-489999----9999859888999978897524788834772579999983996
Q 002756 234 PAG-------WKLKEEYLPSGWKCLV-CGASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLP 301 (884)
Q Consensus 234 ~~~-------~~ll~~ll~~~~~~vv-~G~~~~----~lp~NV~i~~~~~~~pdlLa~adl~IthgG~~Tv~Eal~~GvP 301 (884)
... ..++..+...++.+++ .+.... .+|+|+.+.+|.+ +.++|+++|+||||||+||++|++++|||
T Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~v~~~~~~p-~~~lL~~~~~~v~h~G~~s~~Eal~~GvP 326 (400)
T 4amg_A 248 DALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLALLGELPANVRVVEWIP-LGALLETCDAIIHHGGSGTLLTALAAGVP 326 (400)
T ss_dssp C--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCCCCCCCCTTEEEECCCC-HHHHHTTCSEEEECCCHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEECC-HHHHHHHHHHEECCCCCCHHHHHHHHCCC
T ss_conf 23676399999999986506936999946765432236898779975459-89973013512316775489999995999
Q ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC----------CCCCHHHHHHHHHHHH
Q ss_conf 99992999988388999998838479980566780019999999960799866----------8999899999999998
Q 002756 302 FVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE----------GGINGGEVAAHILQET 370 (884)
Q Consensus 302 ~I~iP~~~~~EQ~~NA~~l~~~G~g~~l~~~~~~~~~l~~~L~~lL~~~~~~~----------~~~~g~~~~A~~i~~~ 370 (884)
+|++| .+.||+.||+++++.|+|+.++..+.+ .++|+++|+++ .|+ ...+++.++|+.++++
T Consensus 327 ~v~~P--~~~dQ~~na~~v~~~G~g~~l~~~~~~----~~al~~lL~d~-~~r~~a~~l~~~~~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 327 QCVIP--HGSYQDTNRDVLTGLGIGFDAEAGSLG----AEQCRRLLDDA-GLREAALRVRQEMSEMPPPAETAAXLVAL 398 (400)
T ss_dssp EEECC--C---CHHHHHHHHHHTSEEECCTTTCS----HHHHHHHHHCH-HHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred EEEEC--CCCCHHHHHHHHHHCCCEEECCCCCCH----HHHHHHHHCCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99955--745479999999988988986888752----99999997599-99999999999987699999999999985
Done!