RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002756
(884 letters)
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 205
Score = 116 bits (291), Expect = 3e-30
Identities = 51/237 (21%), Positives = 88/237 (37%), Gaps = 44/237 (18%)
Query: 490 LFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALA 549
+F +E+ +PGR++++G DY+G V I + K
Sbjct: 13 VFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKK--------- 63
Query: 550 RHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKW 609
V SE + + DL + + + W
Sbjct: 64 ---------------VKLYSENFPKLGVIEFDLDEV----------------EKKDGELW 92
Query: 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIH 669
+ YV ++V++ G + +L+ +P G+SSSAS+E+ + LN+
Sbjct: 93 SNYVK-GMIVMLKGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVP 151
Query: 670 PRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIR 726
+L L QK EN +G G++DQ A GE K + + C L +P +R
Sbjct: 152 RLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNT---LKYEMVPVELR 205
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 103 bits (257), Expect = 1e-25
Identities = 55/243 (22%), Positives = 88/243 (36%), Gaps = 42/243 (17%)
Query: 474 RTPE--KRQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHV 531
R P+ + R+A F E E+ APGR++++G DY+ LVL M + +
Sbjct: 4 RQPQVAELLAEARRAFREEFGAEPEL-AVSAPGRVNLIGEHTDYNQGLVLPMALELMTVL 62
Query: 532 ALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKP 591
L + + +
Sbjct: 63 VGSPRKDGLVSLLTTSE-----------------------------------GADEPQRL 87
Query: 592 MSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 651
+ + +WA YV G + S +V S+VP G G+SSSAS
Sbjct: 88 QFPLPTAQRSLEPGTPRWANYVKGV----IQYYPAAPLPGFSAVVVSSVPLGGGLSSSAS 143
Query: 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQ 711
+EVA+ + + + A +CQ+ E+ G PCG+MDQ S G+ L + C+
Sbjct: 144 LEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCR 203
Query: 712 PAE 714
E
Sbjct: 204 SLE 206
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 225
Score = 91.9 bits (227), Expect = 2e-21
Identities = 42/220 (19%), Positives = 76/220 (34%), Gaps = 27/220 (12%)
Query: 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKG 555
E+ + APG++ + G A G + L + + + L+ S K L + K
Sbjct: 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNV---GIKQ 60
Query: 556 QGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAG 615
+ LQ++ G P ++ + + + + + +A
Sbjct: 61 VWDVATLQLLDTGFLEQGDVPAPTLEQLEKLKK--------VAGLPRDCVGNEGLSLLAF 112
Query: 616 TILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRD--- 672
L L R S+ ++V S +P G G+ SSA+ V +A+ A +P
Sbjct: 113 LYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRG 172
Query: 673 ------------LALLCQKVENHIVGAPCGVMDQMASACG 700
+ + E I G P G +D S G
Sbjct: 173 SIGSWPEEDLKSINKWAYEGERVIHGNPSG-VDNSVSTWG 211
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 176
Score = 88.8 bits (219), Expect = 7e-21
Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 48/214 (22%)
Query: 501 RAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMP 560
++PGR++++G DY+ V+ M I + +K
Sbjct: 3 KSPGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEKYD----------------------- 39
Query: 561 VLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVL 620
+ + EK + W YV G + VL
Sbjct: 40 -----------------------KVQLYSEHFNEEKTFTLDNLTKEGSWIDYVKGVLWVL 76
Query: 621 MTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKV 680
+ E + ++ +P G G+SSSAS EV + + + LNI P ALL +K
Sbjct: 77 IQEGYKIG--GLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKA 134
Query: 681 ENHIVGAPCGVMDQMASACGEANKLLAMVCQPAE 714
EN VG PCG++DQ A G+ + ++ + Q +
Sbjct: 135 ENEFVGVPCGILDQFAVVFGKKDNVIFLDTQTLQ 168
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 180
Score = 76.0 bits (186), Expect = 2e-16
Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 41/203 (20%)
Query: 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQG 557
+ P ++ + G A G + M I + +++ + L + L
Sbjct: 6 MIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDL--------- 56
Query: 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTI 617
+ ++L++ + + Y I
Sbjct: 57 -----------------NKSLGLNLNEIKNI--------------NPNNFGDFKYCLCAI 85
Query: 618 LVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLC 677
+ L + + + +SS +P G+ SSAS+ + ++ A++ + + ++A L
Sbjct: 86 KNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLG 145
Query: 678 QKVENHIVGAPCGVMDQMASACG 700
VE I G + D
Sbjct: 146 YMVEKEIQG-KASITDTSTITYK 167
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 47.1 bits (110), Expect = 6e-06
Identities = 23/190 (12%), Positives = 54/190 (28%), Gaps = 11/190 (5%)
Query: 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF----VFTSEIQSPRLF 68
+ H+ + HA ++ VVR L +A + +F + + +
Sbjct: 1 NPHVAV---LAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCN 57
Query: 69 IRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVP 128
I+ + G + +E ++ A + + V +V+D
Sbjct: 58 IKSYDISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVA-ETGRPVSCLVADAFI 116
Query: 129 VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYC 188
A + + + +V + V + + L+
Sbjct: 117 WFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGV---SGIQGREDELLNFIPGM 173
Query: 189 PMPAFRDVID 198
FRD+ +
Sbjct: 174 SKVRFRDLQE 183
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 47.0 bits (110), Expect = 7e-06
Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 10/191 (5%)
Query: 12 SSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRK 71
+ L+F + G GH +E + L + ++++ F S +
Sbjct: 6 KNSELIF---IPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLA 62
Query: 72 VLLDCGAVQ---ADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVP 128
+ + + L S E Y T + +K ++ + S K +V D
Sbjct: 63 SQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFC 122
Query: 129 VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYC 188
V+ + + S + + + ++ +D L+ +PG
Sbjct: 123 VSMIDVGNEFGIPSYLFLTSNVGFLSLML----SLKNRQIEEVFDDSDRDHQLLNIPGIS 178
Query: 189 PMPAFRDVIDV 199
+ D
Sbjct: 179 NQVPSNVLPDA 189
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 401
Score = 44.7 bits (104), Expect = 4e-05
Identities = 26/358 (7%), Positives = 68/358 (18%), Gaps = 53/358 (14%)
Query: 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQA 81
G V + L + G + + + V L +
Sbjct: 6 SVCGTRGDVEIGVALADRLKALGVQTRMCAPPA---AEERLAEVGVPHVPVGLPQHMMLQ 62
Query: 82 DALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRS 141
+ + ++ + V + + A + V D+ + +
Sbjct: 63 EGMPPPPPEEEQRLAAMTVEMQFDAVPG---AAEGCAAVVAVGDLAAATGVRSVAEKLGL 119
Query: 142 VCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPG--------------- 186
+ A + + + E R
Sbjct: 120 PFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLWEERAARFADRYGPTLNRRRAEIGL 179
Query: 187 -----------------------YCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDV 223
P V ++ E+ L
Sbjct: 180 PPVEDVFGYGHGERPLLAADPVLAPLQPDVDAVQTGAWLLSDERPLPPELEAFLAAGSPP 239
Query: 224 KLLILNFGGQPAGWKLKEEYL----PSGWKCLVCGASDSQLPPNF---IKLPKDAYTPDF 276
+ + + G + ++ + P+ +
Sbjct: 240 VHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQAL 299
Query: 277 MAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDL 334
++ GT A +P + + ++P+ + GV
Sbjct: 300 FRRVAAVIHHGSAGTEHVATRAGVPQLVI--PRNTDQPYFAGRVAALGIGVAHDGPTP 355
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 42.5 bits (98), Expect = 2e-04
Identities = 27/201 (13%), Positives = 57/201 (28%), Gaps = 11/201 (5%)
Query: 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLL 74
H+V + GH + ++ + L G + V + + + P+ F
Sbjct: 3 HVVM---IPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF 59
Query: 75 DCGAVQA--------DALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV 126
+ ++ ++ D + + + P +L N +VSD
Sbjct: 60 NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDC 119
Query: 127 VPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPG 186
AA+ + S + R I+ E Y L
Sbjct: 120 CMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVD 179
Query: 187 YCPMPAFRDVIDVPLVVRRLH 207
+ P + D+ +R +
Sbjct: 180 WIPGLKNFRLKDIVDFIRTTN 200
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus
abyssi [TaxId: 29292]}
Length = 437
Score = 38.3 bits (87), Expect = 0.004
Identities = 31/223 (13%), Positives = 58/223 (26%), Gaps = 16/223 (7%)
Query: 16 LVFAYYVTGHGFGHATRVV-EVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLL 74
L+ + G + + L S GH+V V T + EI R+F +V +
Sbjct: 4 LLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQV 63
Query: 75 DCGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA 134
+ L + R+ SE P W I+ + +
Sbjct: 64 KVSYEERGNLRIYRIGGGLLDSEDVYGPG---------WDGLIRKAVTFGRASVLLLNDL 114
Query: 135 ADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFR 194
V W ++A ++ ++ H +LP + A
Sbjct: 115 LREEPLPDVVHFHDWHTVFAGALIKKYFKIPAVFTI------HRLNKSKLPAFYFHEAGL 168
Query: 195 DVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGW 237
+ + H + + F G
Sbjct: 169 SELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGK 211
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 391
Score = 37.0 bits (84), Expect = 0.008
Identities = 33/345 (9%), Positives = 75/345 (21%), Gaps = 39/345 (11%)
Query: 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQA 81
G +V + L G D + + + + V +
Sbjct: 6 TGCGSRGDTEPLVALAARLRELGADARMCLPPD---YVERC--AEVGVPMVPVGRAVRAG 60
Query: 82 DALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRS 141
+ + VA + +E +++ ++ V V A GI
Sbjct: 61 AREPGELPPGAAEVVTEVVAEWFDKVPAAIEGCDAVVTTGLLPAAVAVRS-MAEKLGIPY 119
Query: 142 VCVTNFSWDFIYAEYVMAAGHHHRSIVWQI------------------AEDYSHCEFLIR 183
+ +++ DY + +
Sbjct: 120 RYTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRASIGLPPVEHLYDYGYTDQPWL 179
Query: 184 LPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEY 243
P + + + + EL + G + +
Sbjct: 180 AADPVLSPLRPTDLGTVQTGAWILPDERPLSAELEAFLAAGSTPVYVGFGSSSRPATADA 239
Query: 244 LPSGWKCLV------------CGASDSQLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGT 291
K + + + + F + GT
Sbjct: 240 AKMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQELFGRV-AAAIHHDSAGT 298
Query: 292 VSEALAYKLPFVFVRR--DYFNEEPFLRNMLEFYQGGVEMIRRDL 334
A+ +P + VRR D E+ + + + GV +
Sbjct: 299 TLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVDGPVP 343
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 401
Score = 35.1 bits (79), Expect = 0.035
Identities = 37/355 (10%), Positives = 79/355 (22%), Gaps = 48/355 (13%)
Query: 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQA 81
T G +V + + G DV + + + V A
Sbjct: 6 ATCGSRGDTEPLVALAVRVRDLGADVRMCAPPD---CAERLAEVGVPHVPVGPSARAPIQ 62
Query: 82 DALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRS 141
A + +++ A+A + + E ++ +++ + V A
Sbjct: 63 RA-KPLTAEDVRRFTTEAIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYF 121
Query: 142 VCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPL 201
S+ G I + + + RD I +P
Sbjct: 122 YAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQWERNNQSAYQRYGGLLNSHRDAIGLPP 181
Query: 202 VVRRLHKSRKEVRKELGIE----------DDVKLLILNFGGQPAGWKLKEEYLPSGWKCL 251
V + D V+ + +L +G +
Sbjct: 182 VEDIFTFGYTDHPWVAADPVLAPLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGPPPV 241
Query: 252 VCGASDSQLPPNFIK--------------------------LPKDAYTPDF------MAA 279
G P + ++ D +
Sbjct: 242 YLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLFGR 301
Query: 280 SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDL 334
++ G GT A P + + ++P+ + GV
Sbjct: 302 VAAVIHHGGAGTTHVAARAGAPQILLP--QMADQPYYAGRVAELGVGVAHDGPIP 354
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis
protein RfaG {Escherichia coli [TaxId: 562]}
Length = 370
Score = 34.1 bits (76), Expect = 0.071
Identities = 24/238 (10%), Positives = 61/238 (25%), Gaps = 17/238 (7%)
Query: 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLD 75
++ Y+ G G + + + + GH V V T + + + ++ ++
Sbjct: 5 CLYKYFPFG---GLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHT-- 59
Query: 76 CGAVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAA 135
+Y K D V N + V A
Sbjct: 60 ------------NHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVA 107
Query: 136 DAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRD 195
+T+ + E ++ + + + +
Sbjct: 108 QEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPG 167
Query: 196 VIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLPSGWKCLVC 253
+ ++ SR+ R++ GI++ LL+ + + +
Sbjct: 168 IYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLR 225
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans,
strain 27774 [TaxId: 876]}
Length = 45
Score = 26.6 bits (59), Expect = 1.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 242 EYLPSGWKCLVCGASDSQLPP 262
+ LP W C VCG S Q P
Sbjct: 24 DQLPDDWCCPVCGVSKDQFSP 44
>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae
[TaxId: 4932]}
Length = 87
Score = 27.7 bits (61), Expect = 1.7
Identities = 8/59 (13%), Positives = 18/59 (30%)
Query: 124 SDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLI 182
S +VPV R V + W + + + + ++ F++
Sbjct: 1 SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIV 59
>d2j0na1 a.250.1.1 (A:144-314) Invasin IpaD {Shigella flexneri
[TaxId: 623]}
Length = 171
Score = 28.6 bits (64), Expect = 2.4
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 575 GPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELG---VRFE-- 629
+ L + ++ K A + KW + GTI + + G V
Sbjct: 49 VNSLKKALEELKEKYKDKPLYPANNTVSQEQANKWLTELGGTIGKVSQKNGGYVVSINMT 108
Query: 630 --DSISMLVSSAVPEGKGVSSSASVE 653
D++ + + G+ V +A +
Sbjct: 109 PIDNMLKSLDNLGGNGEVVLDNAKYQ 134
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId:
879]}
Length = 52
Score = 25.8 bits (57), Expect = 3.4
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 242 EYLPSGWKCLVCGASDSQ 259
E LP W C VCGAS
Sbjct: 31 EDLPDDWACPVCGASKDA 48
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId:
1501]}
Length = 53
Score = 25.8 bits (57), Expect = 3.7
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 231 GGQPAGWKLKEEYLPSGWKCLVCGASDSQ 259
G G K+ +P W C +CG Q
Sbjct: 22 NGVNPGTDFKD--IPDDWVCPLCGVGKDQ 48
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 53
Score = 25.8 bits (57), Expect = 4.0
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 231 GGQPAGWKLKEEYLPSGWKCLVCGASDSQ 259
G G K +E LP W C +CGA S+
Sbjct: 21 NGISPGTKFEE--LPDDWVCPICGAPKSE 47
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 28.1 bits (61), Expect = 5.0
Identities = 14/152 (9%), Positives = 33/152 (21%), Gaps = 20/152 (13%)
Query: 36 VVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95
++R + GH V + + + + Q L + + ++
Sbjct: 19 LIRVAAAVGHHVRAQVHSLK--------GLIAEELQAIPNVTLFQGPLL--NNVPLMDTL 68
Query: 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAE 155
+ ++N+ + AA AG + + D
Sbjct: 69 ----------FEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYG 118
Query: 156 YVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGY 187
A + G
Sbjct: 119 PWPAVPMWAPKFTVENYVRQLGLPSTFVYAGI 150
>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide
transhydrogenase dI component {Rhodospirillum rubrum
[TaxId: 1085]}
Length = 194
Score = 27.4 bits (60), Expect = 6.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 35 EVVRNLISAGHDVHVVTGAPDFVFTSEIQSP 65
EVV+ L+ G +V V GA ++
Sbjct: 21 EVVKKLVGLGFEVIVEQGAGVGASITDDALT 51
>d1bf2a2 b.71.1.1 (A:638-750) Isoamylase {Pseudomonas amyloderamosa
[TaxId: 32043]}
Length = 113
Score = 26.2 bits (57), Expect = 7.3
Identities = 4/55 (7%), Positives = 13/55 (23%)
Query: 220 EDDVKLLILNFGGQPAGWKLKEEYLPSGWKCLVCGASDSQLPPNFIKLPKDAYTP 274
+ + + N + L + W + + F+ +
Sbjct: 40 DSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVTDTCDWNDGASTFVAPGSETLIG 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.409
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,410,548
Number of extensions: 167965
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 33
Length of query: 884
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 791
Effective length of database: 1,130,706
Effective search space: 894388446
Effective search space used: 894388446
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)