BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002757
(884 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 239 bits (611), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 116/178 (65%), Positives = 136/178 (76%), Gaps = 1/178 (0%)
Query: 294 FMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVS 352
FMNSALQCL +T L DYFL D Y EIN DNPLGM GEIA A+ +L++++W+ A V+
Sbjct: 19 FMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVA 78
Query: 353 PRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDI 412
PR FK+++ RFAPQFSG+ Q DSQELLAFLLDGLHEDLNRVK KPY E KD +GR D +
Sbjct: 79 PRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVV 138
Query: 413 ADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMM 470
A E W+NH RNDS+IVD G +KSTLVCP C KVSVTFDPF YL+LPLP R+M
Sbjct: 139 AKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVM 196
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/154 (55%), Positives = 113/154 (73%), Gaps = 2/154 (1%)
Query: 727 KRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFS 786
K+ + +V+L C+E F T E LG D WYCP CKKH QA+KK DLW LP+ILV+HLKRFS
Sbjct: 205 KKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFS 264
Query: 787 YSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHH 846
Y+R+ ++KL+T V+FP+ L++S V +L+ + Y L AVSNHYG+MG GHYTA+ +
Sbjct: 265 YNRYWRDKLDTVVEFPIRGLNMSEFVCNLSAR-PYVYDLIAVSNHYGAMGVGHYTAYAKN 323
Query: 847 G-GGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
G+WY FDDS+V S+D+I T AAYVLFY+R
Sbjct: 324 KLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 357
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 396
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 111/174 (63%), Gaps = 1/174 (0%)
Query: 294 FMNSALQCLVHTPKLVDYFLGDYFRE-INHDNPLGMDGEIALAFGDLLRKLWAPGAAPVS 352
+MNS LQCL + P L DYF + +++ IN N LG GE+A FG +++ LW +S
Sbjct: 73 YMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYIS 132
Query: 353 PRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDI 412
P+ FK + + QF+G++Q DSQELL FL+DGLHEDLN+ + + ++ D D
Sbjct: 133 PKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKA 192
Query: 413 ADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTT 466
A+ WQ H N+SIIV L QGQ+KST+ C C K S TF+ FMYLSLPL ST+
Sbjct: 193 AEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS 246
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 2/161 (1%)
Query: 718 EIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEI 777
E F LP +L CL F EE L + +YC C+ + KK+++W+LP +
Sbjct: 233 EAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPV 292
Query: 778 LVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGG 837
L++HLKRFSY K KL+T VDFP++NLDLS +V + L +Y L++VSNHYG + G
Sbjct: 293 LLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLK-KYNLFSVSNHYGGLDG 351
Query: 838 GHYTAFVHHGGGQ-WYDFDDSHVYPISQDKIKTSAAYVLFY 877
GHYTA+ + Q W+ FDD V IS +K+SAAY+LFY
Sbjct: 352 GHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 392
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Query: 294 FMNSALQCLVHTPKLVDYFLGDYFRE-INHDNPLGMDGEIALAFGDLLRKLWAPGAAPVS 352
+ NS LQCL + P L DYF + +++ IN N LG GE+A FG + + LW +S
Sbjct: 73 YXNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIXKALWTGQYRYIS 132
Query: 353 PRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDI 412
P+ FK + + QF+G++Q DSQELL FL DGLHEDLN+ + + ++ D D
Sbjct: 133 PKDFKITIGKINDQFAGYSQQDSQELLLFLXDGLHEDLNKADNRKRYKEENNDHLDDFKA 192
Query: 413 ADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTT 466
A+ WQ H N+SIIV L QGQ+KST+ C C K S TF+ F YLSLPL ST+
Sbjct: 193 AEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFXYLSLPLASTS 246
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 2/161 (1%)
Query: 718 EIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEI 777
E F LP +L CL F EE L + +YC C+ + KK+++W+LP +
Sbjct: 233 EAFXYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPV 292
Query: 778 LVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGG 837
L++HLKRFSY K KL+T VDFP++NLDLS +V + L +Y L++VSNHYG + G
Sbjct: 293 LLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLK-KYNLFSVSNHYGGLDG 351
Query: 838 GHYTAFVHHGGGQ-WYDFDDSHVYPISQDKIKTSAAYVLFY 877
GHYTA+ + Q W+ FDD V IS +K+SAAY+LFY
Sbjct: 352 GHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 392
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With
Ubiquitin
Length = 348
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 119/206 (57%), Gaps = 22/206 (10%)
Query: 294 FMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALA--FGDLLRKLWAPGAAP 350
FMNS LQCL +T +L DY L Y R+++H G + AL F L++ +W ++P
Sbjct: 20 FMNSILQCLSNTRELRDYCLQRLYMRDLHH----GSNAHTALVEEFAKLIQTIWT--SSP 73
Query: 351 ---VSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGR 407
VSP FK+++ R+AP+F G+NQ D+QE L FLLDGLH ++NRV +P + ++ D
Sbjct: 74 NDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHL 133
Query: 408 SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPL----- 462
D++ + W+ +L R DS I DL GQ KS+L C C S FDPF LSLP+
Sbjct: 134 PDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGY 193
Query: 463 PSTT----VRMMTLTVVNTDGTAKPS 484
P T +R+ T V DG KP+
Sbjct: 194 PEVTLMDCMRLFTKEDV-LDGDEKPT 218
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 3/154 (1%)
Query: 725 LPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKR 784
+ KR V+L C+ F E+ L ++ C C+ + KK + R P+ILV+HLKR
Sbjct: 188 IAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKR 247
Query: 785 FSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFV 844
FS SR +KL T+V+FP+ +LDL + + Y LYAVSNH G+ GGHYTA+
Sbjct: 248 FSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV--YNLYAVSNHSGTTMGGHYTAYC 305
Query: 845 HH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877
G G+W+ F+DS V P+S +++TS AY+LFY
Sbjct: 306 RSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 339
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin
Length = 359
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 119/206 (57%), Gaps = 22/206 (10%)
Query: 294 FMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALA--FGDLLRKLWAPGAAP 350
FMNS LQCL +T +L DY L Y R+++H G + AL F L++ +W ++P
Sbjct: 20 FMNSILQCLSNTRELRDYCLQRLYMRDLHH----GSNAHTALVEEFAKLIQTIWT--SSP 73
Query: 351 ---VSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGR 407
VSP FK+++ R+AP+F G+NQ D+QE L FLLDGLH ++NRV +P + ++ D
Sbjct: 74 NDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHL 133
Query: 408 SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPL----- 462
D++ + W+ +L R DS I DL GQ KS+L C C S FDPF LSLP+
Sbjct: 134 PDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGY 193
Query: 463 PSTT----VRMMTLTVVNTDGTAKPS 484
P T +R+ T V DG KP+
Sbjct: 194 PEVTLMDCMRLFTKEDV-LDGDEKPT 218
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 3/154 (1%)
Query: 725 LPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKR 784
+ KR V+L C+ F E+ L ++ C C+ + KK + R P+ILV+HLKR
Sbjct: 188 IAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKR 247
Query: 785 FSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFV 844
FS SR +KL T+V+FP+ +LDL + + Y LYAVSNH G+ GGHYTA+
Sbjct: 248 FSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV--YNLYAVSNHSGTTMGGHYTAYC 305
Query: 845 HH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877
G G+W+ F+DS V P+S +++TS AY+LFY
Sbjct: 306 RSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 339
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
pdb|3V6E|A Chain A, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 367
Score = 139 bits (350), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 119/206 (57%), Gaps = 22/206 (10%)
Query: 294 FMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALA--FGDLLRKLWAPGAAP 350
FMNS LQCL +T +L DY L Y R+++H G + AL F L++ +W ++P
Sbjct: 39 FMNSILQCLSNTRELRDYCLQRLYMRDLHH----GSNAHTALVEEFAKLIQTIWT--SSP 92
Query: 351 ---VSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGR 407
VSP FK+++ R+AP+F G+NQ D+QE L FLLDGLH ++NRV +P + ++ D
Sbjct: 93 NDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHL 152
Query: 408 SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPL----- 462
D++ + W+ +L R DS I DL GQ KS+L C C S FDPF LSLP+
Sbjct: 153 PDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGY 212
Query: 463 PSTT----VRMMTLTVVNTDGTAKPS 484
P T +R+ T V DG KP+
Sbjct: 213 PEVTLMDCMRLFTKEDV-LDGDEKPT 237
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 3/154 (1%)
Query: 725 LPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKR 784
+ KR V+L C+ F E+ L ++ C C+ + KK + R P+ILV+HLKR
Sbjct: 207 IAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKR 266
Query: 785 FSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFV 844
FS SR +KL T+V+FP+ +LDL + + Y LYAVSNH G+ GGHYTA+
Sbjct: 267 FSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV--YNLYAVSNHSGTTMGGHYTAYC 324
Query: 845 HH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877
G G+W+ F+DS V P+S +++TS AY+LFY
Sbjct: 325 RSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 358
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex
Length = 374
Score = 139 bits (350), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 119/206 (57%), Gaps = 22/206 (10%)
Query: 294 FMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALA--FGDLLRKLWAPGAAP 350
FMNS LQCL +T +L DY L Y R+++H G + AL F L++ +W ++P
Sbjct: 46 FMNSILQCLSNTRELRDYCLQRLYMRDLHH----GSNAHTALVEEFAKLIQTIWT--SSP 99
Query: 351 ---VSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGR 407
VSP FK+++ R+AP+F G+NQ D+QE L FLLDGLH ++NRV +P + ++ D
Sbjct: 100 NDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHL 159
Query: 408 SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPL----- 462
D++ + W+ +L R DS I DL GQ KS+L C C S FDPF LSLP+
Sbjct: 160 PDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGY 219
Query: 463 PSTT----VRMMTLTVVNTDGTAKPS 484
P T +R+ T V DG A P+
Sbjct: 220 PEVTLMDCMRLFTKEDV-LDGDAAPT 244
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 92/154 (59%), Gaps = 3/154 (1%)
Query: 725 LPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKR 784
+ KR V+L C+ F E+ L + C C+ + KK + R P+ILV+HLKR
Sbjct: 214 IAKRGYPEVTLMDCMRLFTKEDVLDGDAAPTCCRCRGRKRCIKKFSIQRFPKILVLHLKR 273
Query: 785 FSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFV 844
FS SR +KL T+V+FP+ +LDL + + Y LYAVSNH G+ GGHYTA+
Sbjct: 274 FSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV--YNLYAVSNHSGTTMGGHYTAYC 331
Query: 845 HH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877
G G+W+ F+DS V P+S +++TS AY+LFY
Sbjct: 332 RSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 365
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|C Chain C, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|E Chain E, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|G Chain G, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
Length = 355
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 733 VSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSK 792
VSL C F EE L E+ C C++ +++KKL + R P ILV+HL RFS SR S
Sbjct: 206 VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSI 265
Query: 793 NKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQWY 852
K VDFP+ L L + + S Y LYA+ NH GS+ GHYTA G W+
Sbjct: 266 KKSSVGVDFPLQRLSLGDFAS--DKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTG-WH 322
Query: 853 DFDDSHVYPISQDKIKTSAAYVLFYRRVVE 882
++DS V P+S++++ +S YVLFY+ + E
Sbjct: 323 VYNDSRVSPVSENQVASSEGYVLFYQLMQE 352
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 95/186 (51%), Gaps = 18/186 (9%)
Query: 294 FMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAA-PVS 352
F+N+ LQCL T L D+ L FR+ G E+ AF D++ LW P + V+
Sbjct: 14 FLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG--GRAQELTEAFADVIGALWHPDSCEAVN 71
Query: 353 PRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNR--------VKCKPYAEAKDG 404
P F++ ++ P FSG++Q D+QE L L++ LH ++NR + P
Sbjct: 72 PTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRR 131
Query: 405 DGR-------SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMY 457
G SD+D A+ W+ +L R DS IVDL GQ KS L C C S TF+ F
Sbjct: 132 GGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCD 191
Query: 458 LSLPLP 463
LSLP+P
Sbjct: 192 LSLPIP 197
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|C Chain C, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 373
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 733 VSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSK 792
VSL C F EE L E+ C C++ +++KKL + R P ILV+HL RFS SR S
Sbjct: 225 VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSI 284
Query: 793 NKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQWY 852
K VDFP+ L L + + S Y LYA+ NH GS+ GHYTA G W+
Sbjct: 285 KKSSVGVDFPLQRLSLGDFAS--DKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTG-WH 341
Query: 853 DFDDSHVYPISQDKIKTSAAYVLFYRRVVE 882
++DS V P+S++++ +S YVLFY+ + E
Sbjct: 342 VYNDSRVSPVSENQVASSEGYVLFYQLMQE 371
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 95/186 (51%), Gaps = 18/186 (9%)
Query: 294 FMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAA-PVS 352
F+N+ LQCL T L D+ L FR+ G E+ AF D++ LW P + V+
Sbjct: 33 FLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG--GRAQELTEAFADVIGALWHPDSCEAVN 90
Query: 353 PRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNR--------VKCKPYAEAKDG 404
P F++ ++ P FSG++Q D+QE L L++ LH ++NR + P
Sbjct: 91 PTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRR 150
Query: 405 DGR-------SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMY 457
G SD+D A+ W+ +L R DS IVDL GQ KS L C C S TF+ F
Sbjct: 151 GGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCD 210
Query: 458 LSLPLP 463
LSLP+P
Sbjct: 211 LSLPIP 216
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|E Chain E, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 370
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 733 VSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSK 792
VSL C F EE L E+ C C++ +++KKL + R P ILV+HL RFS SR S
Sbjct: 219 VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSI 278
Query: 793 NKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQWY 852
K VDFP+ L L + + S Y LYA+ NH GS+ GHYTA G W+
Sbjct: 279 KKSSVGVDFPLQRLSLGDFAS--DKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTG-WH 335
Query: 853 DFDDSHVYPISQDKIKTSAAYVLFYRRVVE 882
++DS V P+S++++ +S YVLFY+ + E
Sbjct: 336 VYNDSRVSPVSENQVASSEGYVLFYQLMQE 365
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 95/186 (51%), Gaps = 18/186 (9%)
Query: 294 FMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAA-PVS 352
F+N+ LQCL T L D+ L FR+ G E+ AF D++ LW P + V+
Sbjct: 27 FLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG--GRAQELTEAFADVIGALWHPDSCEAVN 84
Query: 353 PRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNR--------VKCKPYAEAKDG 404
P F++ ++ P FSG++Q D+QE L L++ LH ++NR + P
Sbjct: 85 PTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRR 144
Query: 405 DGR-------SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMY 457
G SD+D A+ W+ +L R DS IVDL GQ KS L C C S TF+ F
Sbjct: 145 GGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCD 204
Query: 458 LSLPLP 463
LSLP+P
Sbjct: 205 LSLPIP 210
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|4FJC|A Chain A, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FJC|E Chain E, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
Length = 476
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 11/152 (7%)
Query: 735 LYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKN- 793
LY+CL++F +E L + ++C C A K+L + +LP +LV+ LKRF + N
Sbjct: 321 LYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNR 379
Query: 794 KLETYVDFPVDNLDLSTHVA-HLNDKLSNR-------YMLYAVSNHYGSMGGGHYTAFVH 845
KL+ +++FP L++ + + DK S Y L + +H G++ GHY AF
Sbjct: 380 KLDDFIEFPT-YLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCK 438
Query: 846 HGGGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877
GGQW+ F+DS V ISQ+++ AY+LFY
Sbjct: 439 ISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 470
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 43/188 (22%)
Query: 294 FMNSALQCLVHTPKLVDYFLGDYFREINHDN----------PLGMDGEIALAFGDLLRKL 343
FM+S LQCL+H P YF+ +I+ +N +D + +G L K
Sbjct: 152 FMSSILQCLIHNP----YFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQ 207
Query: 344 WAPGAAPVSPRTFKSKLARFA----PQFSGFNQHDSQELLAFLLDGLHE----DLNRVKC 395
+ + + +T L A +G++Q D+ E F+++ +H+ DL K
Sbjct: 208 ASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAK- 266
Query: 396 KPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVS-VTFDP 454
E + + E I + +G +S++VCP C+ S T DP
Sbjct: 267 ----EVSRANNKQCECIVHTVF---------------EGSLESSIVCPGCQNNSKTTIDP 307
Query: 455 FMYLSLPL 462
F+ LSL +
Sbjct: 308 FLDLSLDI 315
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FIP|E Chain E, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FK5|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
Length = 476
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 11/152 (7%)
Query: 735 LYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKN- 793
LY+CL++F +E L + ++C C A K+L + +LP +LV+ LKRF + N
Sbjct: 321 LYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNR 379
Query: 794 KLETYVDFPVDNLDLSTHVA-HLNDKLSNR-------YMLYAVSNHYGSMGGGHYTAFVH 845
KL+ +++FP L++ + + DK S Y L + +H G++ GHY AF
Sbjct: 380 KLDDFIEFPT-YLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCK 438
Query: 846 HGGGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877
GGQW+ F+DS V ISQ+++ AY+LFY
Sbjct: 439 ISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 470
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 43/188 (22%)
Query: 294 FMNSALQCLVHTPKLVDYFLGDYFREINHDN----------PLGMDGEIALAFGDLLRKL 343
FM+S LQCL+H P YF+ +I+ +N +D + +G L K
Sbjct: 152 FMSSILQCLIHNP----YFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQ 207
Query: 344 WAPGAAPVSPRT----FKSKLARFAPQFSGFNQHDSQELLAFLLDGLHE----DLNRVKC 395
+ + + +T + + +G++Q D+ E F+++ +H+ DL K
Sbjct: 208 ASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAK- 266
Query: 396 KPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVS-VTFDP 454
E + + E I + +G +S++VCP C+ S T DP
Sbjct: 267 ----EVSRANNKQCECIVHTVF---------------EGSLESSIVCPGCQNNSKTTIDP 307
Query: 455 FMYLSLPL 462
F+ LSL +
Sbjct: 308 FLDLSLDI 315
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
Length = 471
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 11/152 (7%)
Query: 735 LYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKN- 793
LY+CL++F +E L + ++C C A K+L + +LP +LV+ LKRF + N
Sbjct: 316 LYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNR 374
Query: 794 KLETYVDFPVDNLDLSTHVA-HLNDKLSNR-------YMLYAVSNHYGSMGGGHYTAFVH 845
KL+ +++FP L++ + + DK S Y L + +H G++ GHY AF
Sbjct: 375 KLDDFIEFPT-YLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCK 433
Query: 846 HGGGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877
GGQW+ F+DS V ISQ+++ AY+LFY
Sbjct: 434 ISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 465
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 43/188 (22%)
Query: 294 FMNSALQCLVHTPKLVDYFLGDYFREINHDN----------PLGMDGEIALAFGDLLRKL 343
FM+S LQCL+H P YF+ +I+ +N +D + +G L K
Sbjct: 147 FMSSILQCLIHNP----YFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQ 202
Query: 344 WAPGAAPVSPRT----FKSKLARFAPQFSGFNQHDSQELLAFLLDGLHE----DLNRVKC 395
+ + + +T + + +G++Q D+ E F+++ +H+ DL K
Sbjct: 203 ASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAK- 261
Query: 396 KPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVS-VTFDP 454
E + + E I + +G +S++VCP C+ S T DP
Sbjct: 262 ----EVSRANNKQCECIVHTVF---------------EGSLESSIVCPGCQNNSKTTIDP 302
Query: 455 FMYLSLPL 462
F+ LSL +
Sbjct: 303 FLDLSLDI 310
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp)
pdb|1NB8|B Chain B, Structure Of The Catalytic Domain Of Usp7 (Hausp)
Length = 353
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 764 QASKKLDLWRLPEILVIHLKRFSYS-RFSKN-KLETYVDFPVDNLDLSTHVAHLNDKLSN 821
+A K + LP +L + L RF Y + +N K+ +FP + L L + + K
Sbjct: 181 EAEKGVKFLTLPPVLHLQLXRFXYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPA 239
Query: 822 RYMLYAVSNHYGSMGGGHYTAFVH-HGGGQWYDFDDSHV 859
Y+L+AV H G GGHY +++ G G+W FDD V
Sbjct: 240 NYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVV 278
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|B Chain B, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|E Chain E, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
Length = 353
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 764 QASKKLDLWRLPEILVIHLKRFSYS-RFSKN-KLETYVDFPVDNLDLSTHVAHLNDKLSN 821
+A K + LP +L + L RF Y + +N K+ +FP + L L + + K
Sbjct: 181 EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPA 239
Query: 822 RYMLYAVSNHYGSMGGGHYTAFVH-HGGGQWYDFDDSHV 859
Y+L+AV H G GGHY +++ G G+W FDD V
Sbjct: 240 NYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVV 278
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 764 QASKKLDLWRLPEILVIHLKRFSYSRFSKN--KLETYVDFPVDNLDLSTHVAHLNDKLSN 821
+A K + LP +L + L RF Y + K+ +FP + L L + + K
Sbjct: 350 EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPA 408
Query: 822 RYMLYAVSNHYGSMGGGHYTAFVH-HGGGQWYDFDDSHV 859
Y+L+AV H G GGHY +++ G G+W FDD V
Sbjct: 409 NYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVV 447
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%)
Query: 299 LQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFK 357
LQ L T K+V Y+L D E+ P G D E+ + G LL K A P TFK
Sbjct: 78 LQLLAGTYKIVGYYLYDGLDEVLLAGPAGDDNELTVVSGGLLEKALTVDAVPHGTVTFK 136
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|B Chain B, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|C Chain C, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYO|A Chain A, Structure Of Usp14 Bound To Ubquitin Aldehyde
Length = 404
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 823 YMLYAVSNHYG-SMGGGHYTAFVHHGGGQWYDFDDSHVYPIS-QDKIKTSA------AYV 874
Y L AV H G S GHY ++V +W FDD V ++ +D ++ S AYV
Sbjct: 328 YDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYV 387
Query: 875 LFY--RRV 880
L Y RRV
Sbjct: 388 LLYGPRRV 395
>pdb|3JYU|A Chain A, Crystal Structure Of The N-Terminal Domains Of The
Ubiquitin Specific Peptidase 4 (Usp4)
pdb|3JYU|B Chain B, Crystal Structure Of The N-Terminal Domains Of The
Ubiquitin Specific Peptidase 4 (Usp4)
Length = 231
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 109 DYALVPGEMWLQALKWH----SDTKVAAKNRKSFLASEDDMADVYPLQLRLSVMRE-TNS 163
DY LVP E W + L W+ + K + L + +VY L+L+L + TN
Sbjct: 94 DYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNV 153
Query: 164 LGVKISKKDNAVELFKRACKIFSIESE 190
L SK D + K K+F+I +E
Sbjct: 154 LSCHFSKADTIATIEKEXRKLFNIPAE 180
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase
6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A
Resolution
Length = 415
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 823 YMLYAVSNHYGSMG-GGHYTAFVHH--GGGQWYDFDDSHVYPISQDKIKTSAA 872
Y L V H G+ GHY AF+ +WY F+D V + ++KI++ A
Sbjct: 346 YNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAG 398
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P E L
Sbjct: 183 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTEYSLI 242
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 243 QDPKYLSIVKEYANDQDKFF 262
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 182 THLKNSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPWDATNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 177 THLKNSGYEGPQGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 236
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 237 QDPKYLSIVKEYANDQDKFF 256
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 182 THLKNSGYEGPQGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 177 TELKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 236
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 237 QDPKYLSIVKEYANDQDKFF 256
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 182 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 177 THLKNSGYEGPYGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 236
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 237 QDPKYLSIVKEYANDQDKFF 256
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 179 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 238
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 239 QDPKYLSIVKEYANDQDKFF 258
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 182 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 177 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 236
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 237 QDPKYLSIVKEYANDQDKFF 256
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 182 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 182 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 182 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 177 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 236
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 237 QDPKYLSIVKEYANDQDKFF 256
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 182 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 183 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 242
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 243 QDPKYLSIVKEYANDQDKFF 262
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 177 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 236
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 237 QDPKYLSIVKEYANDQDKFF 256
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 177 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 236
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 237 QDPKYLSIVKEYANDQDKFF 256
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 182 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 182 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYIMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 182 THLKNSGYEGPWGCANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 173 THLKRSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 232
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 233 QDPKYLSIVKEYANDQDKFF 252
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 351 VSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLD 384
++PR FK+ + + P+FS Q D+QE L++
Sbjct: 431 IAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLIN 464
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 177 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 236
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 237 QDPKYLSIVKEYANDQDKFF 256
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 178 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 237
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 238 QDPKYLSIVKEYANDQDKFF 257
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 178 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 237
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 238 QDPKYLSIVKEYANDQDKFF 257
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 179 THLKRSGYEGPFGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 238
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 239 QDPKYLSIVKEYANDQDRFF 258
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 177 THLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 236
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 237 QDPKYLSIVKEYANDQDKFF 256
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 182 THLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 178 THLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 237
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 238 QDPKYLSIVKEYANDQDKFF 257
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 177 THLKRSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 236
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 237 QDPKYLSIVKEYANDQDKFF 256
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 177 THLKNSGYEGPWGAANNVFTNEYYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 236
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 237 QDPKYLSIVKEYANDQDKFF 256
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 182 THLKRSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPWGAANNVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P L
Sbjct: 182 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|3PPA|A Chain A, Structure Of The Dusp-Ubl Domains Of Usp15
Length = 237
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 23/162 (14%)
Query: 34 YLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV 93
YLV RW++ ++ DS K Y Y GP I NS L L+ +
Sbjct: 45 YLVDSRWFKQWKKYVGFDSWDK----YQMGDQNVYPGP------IDNSGL---LKDGDAQ 91
Query: 94 SLQNGENGEVGVSGRDYALVPGEMWLQALKWHS----DTKVAAKNRKSFLASEDDMADVY 149
SL+ E + DY L+P E W + + W++ +A K + + + +VY
Sbjct: 92 SLK-----EHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVY 146
Query: 150 PLQLRLSVMRETNSLGV-KISKKDNAVELFKRACKIFSIESE 190
+L+L N++ + SK D + K KIFSI E
Sbjct: 147 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDE 188
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P L
Sbjct: 183 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTAYSLI 242
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 243 QDPKYLSIVKEYANDQDKFF 262
>pdb|4A3O|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Monomer
pdb|4A3O|B Chain B, Crystal Structure Of The Usp15 Dusp-Ubl Monomer
Length = 220
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 23/162 (14%)
Query: 34 YLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV 93
YLV RW++ ++ DS K Y Y GP I NS L L+ +
Sbjct: 28 YLVDSRWFKQWKKYVGFDSWDK----YQMGDQNVYPGP------IDNSGL---LKDGDAQ 74
Query: 94 SLQNGENGEVGVSGRDYALVPGEMWLQALKWHS----DTKVAAKNRKSFLASEDDMADVY 149
SL+ E + DY L+P E W + + W++ +A K + + + +VY
Sbjct: 75 SLK-----EHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVY 129
Query: 150 PLQLRLSVMRETNSLGV-KISKKDNAVELFKRACKIFSIESE 190
+L+L N++ + SK D + K KIFSI E
Sbjct: 130 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDE 171
>pdb|1TZ1|A Chain A, Solution Structure Of The Pb1 Domain Of Cdc24p (Short
Form)
Length = 80
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 481 AKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQI-----IRYLEEPADS 535
A S FT+ V K F+DLI A++ ++ +N+ I I+Y +E D
Sbjct: 2 AMGSIFTLLVEKVWNFDDLIMAINSK----------ISNTHNNNISPITKIKYQDEDGDF 51
Query: 536 ISLIRDDDQLVAYRLRKENDK 556
+ L D+D VA + EN++
Sbjct: 52 VVLGSDEDWNVAKEMLAENNE 72
>pdb|3T9L|A Chain A, Structure Of N-Terminal Dusp-Ubl Domains Of Human Usp15
Length = 230
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 23/162 (14%)
Query: 34 YLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV 93
YLV RW++ ++ DS K Y Y GP I NS L L+ +
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDK----YQMGDQNVYPGP------IDNSGL---LKDGDAQ 77
Query: 94 SLQNGENGEVGVSGRDYALVPGEMWLQALKWHS----DTKVAAKNRKSFLASEDDMADVY 149
SL+ E + DY L+P E W + + W++ +A K + + + +VY
Sbjct: 78 SLK-----EHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVY 132
Query: 150 PLQLRLSVMRETNSLGV-KISKKDNAVELFKRACKIFSIESE 190
+L+L N++ + SK D + K KIFSI E
Sbjct: 133 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDE 174
>pdb|3PV1|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Domains
pdb|3PV1|B Chain B, Crystal Structure Of The Usp15 Dusp-Ubl Domains
Length = 225
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 23/162 (14%)
Query: 34 YLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV 93
YLV RW++ ++ DS K Y Y GP I NS L L+ +
Sbjct: 33 YLVDSRWFKQWKKYVGFDSWDK----YQMGDQNVYPGP------IDNSGL---LKDGDAQ 79
Query: 94 SLQNGENGEVGVSGRDYALVPGEMWLQALKWHS----DTKVAAKNRKSFLASEDDMADVY 149
SL+ E + DY L+P E W + + W++ +A K + + + +VY
Sbjct: 80 SLK-----EHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVY 134
Query: 150 PLQLRLSVMRETNSLGV-KISKKDNAVELFKRACKIFSIESE 190
+L+L N++ + SK D + K KIFSI E
Sbjct: 135 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDE 176
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 177 THLKNSGYEGPWGAANNVFTNEKYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 236
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 237 QDPKYLSIVKEYANDQDKFF 256
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P L
Sbjct: 180 THLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E +N N E S Y ++P + L
Sbjct: 182 THLKRSGYEGPWGAANNVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLI 241
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 242 QDPKYLSIVKEYANDQDKFF 261
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN F ++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPWGAANNCFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P L
Sbjct: 180 THLKRSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTXYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E +N N E S Y ++P + L
Sbjct: 180 THLKRSGYEGPWGAANNVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|2KFJ|A Chain A, Solution Structure Of The Loop Deletion Mutant Of Pb1
Domain Of Cdc24p
Length = 87
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 486 FTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQL 545
FT+ V K F+DLI A +N + I I+Y +E D + L D+D
Sbjct: 17 FTLLVEKVWNFDDLIMA--------INSKISNTHISPITKIKYQDEDGDFVVLGSDEDWN 68
Query: 546 VAYRLRKENDK 556
VA + EN++
Sbjct: 69 VAKEMLAENNE 79
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y ++P + L
Sbjct: 180 THLKNSGYEGPWGAANNVFTNEGYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|1Q1O|A Chain A, Solution Structure Of The Pb1 Domain Of Cdc24p (Long Form)
Length = 98
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 486 FTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQI-----IRYLEEPADSISLIR 540
FT+ V K F+DLI A++ ++ +N+ I I+Y +E D + L
Sbjct: 25 FTLLVEKVWNFDDLIMAINSK----------ISNTHNNNISPITKIKYQDEDGDFVVLGS 74
Query: 541 DDDQLVAYRLRKENDK 556
D+D VA + EN++
Sbjct: 75 DEDWNVAKEMLAENNE 90
>pdb|2KFK|B Chain B, Solution Structure Of Bem1p Pb1 Domain Complexed With
Cdc24p Pb1 Domain
Length = 86
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 486 FTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQL 545
FT+ V K F+DLI A +N + I I+Y +E D + L D+D
Sbjct: 16 FTLLVEKVWNFDDLIMA--------INSKISNTHISPITKIKYQDEDGDFVVLGSDEDWN 67
Query: 546 VAYRLRKENDK 556
VA + EN++
Sbjct: 68 VAKEMLAENNE 78
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F ++ NL E+ +N N E S Y +P + L
Sbjct: 177 THLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMHLPTDYSLI 236
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 237 QDPKYLSIVKEYANDQDKFF 256
>pdb|3IYP|A Chain A, The Interaction Of Decay-Accelerating Factor With
Echovirus 7
pdb|2X5I|A Chain A, Crystal Structure Echovirus 7
Length = 292
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 316 YFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDS 375
Y R +N D P M I + F ++W P +SP KS F P N D
Sbjct: 220 YARHVNKDTPYQMSSTIRVYFKPKHIRVWVPRPPRLSP-YIKSSNVNFNPT----NLTDE 274
Query: 376 QELLAFLLDGLHEDL 390
+ + ++ D + D+
Sbjct: 275 RSSITYVPDTIRPDV 289
>pdb|1PQS|A Chain A, Solution Structure Of The C-Terminal Opca Domain Of
Ycdc24p
Length = 77
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 15/76 (19%)
Query: 486 FTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQI-----IRYLEEPADSISLIR 540
FT+ V K F+DLI A++ ++ +N+ I I+Y +E D + L
Sbjct: 4 FTLLVEKVWNFDDLIMAINSK----------ISNTHNNNISPITKIKYQDEDGDFVVLGS 53
Query: 541 DDDQLVAYRLRKENDK 556
D+D VA + EN++
Sbjct: 54 DEDWNVAKEMLAENNE 69
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F++ NL E+ +N N E S Y +P + L
Sbjct: 180 THLKNSGYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 61 TATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWL- 119
T + + Y GP NN+F++ NL E+ +N N E S Y +P + L
Sbjct: 180 THLKNSGYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLI 239
Query: 120 QALKWHSDTKVAAKNRKSFL 139
Q K+ S K A ++ F
Sbjct: 240 QDPKYLSIVKEYANDQDKFF 259
>pdb|4A3P|A Chain A, Structure Of Usp15 Dusp-Ubl Deletion Mutant
Length = 217
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 24/161 (14%)
Query: 34 YLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV 93
YLV RW++ ++ DS K Y Y GP I NS L L+ +
Sbjct: 28 YLVDSRWFKQWKKYVGFDSWDK----YQMGDQNVYPGP------IDNSGL---LKDGDAQ 74
Query: 94 SLQNGENGEVGVSGRDYALVPGEMWLQALKWHSDTKVAAKNRKSFLASEDDM---ADVYP 150
SL+ E + DY L+P E W + + W+ T + + + E M +VY
Sbjct: 75 SLK-----EHLIDELDYILLPTEGWNKLVSWY--TLMEGQEPIARKVVEQGMFCKVEVYL 127
Query: 151 LQLRLSVMRETNSLGV-KISKKDNAVELFKRACKIFSIESE 190
+L+L N++ + SK D + K KIFSI E
Sbjct: 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDE 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,645,594
Number of Sequences: 62578
Number of extensions: 1151721
Number of successful extensions: 2762
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2619
Number of HSP's gapped (non-prelim): 111
length of query: 884
length of database: 14,973,337
effective HSP length: 107
effective length of query: 777
effective length of database: 8,277,491
effective search space: 6431610507
effective search space used: 6431610507
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)