BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002757
(884 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana
GN=UBP8 PE=1 SV=2
Length = 871
Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/883 (63%), Positives = 694/883 (78%), Gaps = 25/883 (2%)
Query: 6 EDHSDSTHRVDSDNSSSNNNNNDNDQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQG 65
E +T R+DS N +QRVY VP RWW+DAQ+S S+S +KR +LYTA+ G
Sbjct: 8 ESPDSTTQRIDSFN---------GEQRVYFVPLRWWKDAQDSMPSESVEKREILYTASCG 58
Query: 66 TSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWLQALKWH 125
+SYGGPMK+INNIFNSD++F+LRRE + +LQNGE GE VSGRD+ALV +MWLQALKW+
Sbjct: 59 SSYGGPMKLINNIFNSDILFDLRREGD-ALQNGETGEASVSGRDFALVSSDMWLQALKWY 117
Query: 126 SDTKVAAKNRKSFLASEDDMADVYPLQLRLSVMRETNSLGVKISKKDNAVELFKRACKIF 185
D K K KSF A D DVYP+QLRLSV++ETNSL VKI KKDN+VE F+RACKIF
Sbjct: 118 HDDKNTEKGVKSFSAGGVDRGDVYPVQLRLSVLQETNSLAVKICKKDNSVECFRRACKIF 177
Query: 186 SIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQIYGLSDSLKCREGRKD 245
S++SE L IWD SGQTTL+F +D + SKDC + +D EILLELQIYGLSDS+K +E +K+
Sbjct: 178 SLDSEQLRIWDISGQTTLFFESDVSN-SKDCQQQADQEILLELQIYGLSDSIKLKESKKE 236
Query: 246 EMAVQHSNGSLTNGS-----FGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQ 300
+ + Q +NG +TNG F R++S++F G++GEAG LGLTGLQNLGNTCFMNS+LQ
Sbjct: 237 DGSTQQTNG-ITNGMNGGTVFRFGRSNSLSFLGKAGEAGTLGLTGLQNLGNTCFMNSSLQ 295
Query: 301 CLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKL 360
CL HTPKLVD+FLG+Y +EIN DNPLGM GEIALAFGDLLR LWAPGA+ V+PRTFK+KL
Sbjct: 296 CLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALAFGDLLRSLWAPGASTVAPRTFKAKL 355
Query: 361 ARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNH 420
ARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVK KPY EAKDGDGR D ++ADEYW+NH
Sbjct: 356 ARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKNKPYVEAKDGDGRPDAEVADEYWRNH 415
Query: 421 LARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGT 480
+ARNDSIIVD+CQGQYKSTLVCP+CKKVSV FDPFMYLSLPLP T++R M LTV++ DG+
Sbjct: 416 VARNDSIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLPCTSMRTMDLTVMSADGS 475
Query: 481 AKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIR 540
+ P P T+ VPK+GKFEDL +AL AC+L ETLLV E+YN++IIR+LEEP DS++LIR
Sbjct: 476 SLPIPLTVNVPKFGKFEDLHKALVTACSLPEEETLLVTEVYNNRIIRFLEEPTDSLTLIR 535
Query: 541 DDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDI 600
D D+LV YRL+K+ + PL+V+MHQ+LEEQ+I GK + A GIPLV+++ + +G D+
Sbjct: 536 DGDKLVVYRLKKDANNSPLIVYMHQKLEEQFISGKSSPTWKAFGIPLVSRLCDVENGSDV 595
Query: 601 RNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKE-VEPPS 659
NLYL+LL F +P + F N+ T E + + + + VKE E
Sbjct: 596 ENLYLKLLSSFKMPT-EFFTENL-ENPTEEEATDKTDTDGTTSVEDTNSTDVKETTESLP 653
Query: 660 DAELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEI 719
D L+ YLTD++G ++++ +P+ + + ++VL W K ++ YDT LLSS PE+
Sbjct: 654 DPVLRLYLTDDRGNSIEAEMLKEKPVNKS---KRLNVLARWPVKELDVYDTCLLSSLPEV 710
Query: 720 FKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILV 779
KSG KRPQESVSL+KCLEAFLTEEPLGP+DMWYCPGCK+H QA KKLDLWRLPEILV
Sbjct: 711 SKSG--TKRPQESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQAIKKLDLWRLPEILV 768
Query: 780 IHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGH 839
IHLKRFSYSRF KNKLE YVDFP+DNLDLS+++++ N + + RYMLYA+SNHYGSMGGGH
Sbjct: 769 IHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYGSMGGGH 828
Query: 840 YTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVE 882
YTA+VHHGG +WYDFDDSHV+ ISQ+KIKTSAAYVLFY+R+V+
Sbjct: 829 YTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKRLVD 871
>sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana
GN=UBP5 PE=1 SV=2
Length = 924
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/893 (44%), Positives = 536/893 (60%), Gaps = 50/893 (5%)
Query: 26 NNDNDQRVYLVPYRWWRDAQESTSSDS--DKKRGVLYTATQGTSYGGPMKIINNIFNSDL 83
N+ YL+ RWW++ E + D + G + + +K + I NSDL
Sbjct: 34 NSKEGDTFYLITQRWWQEWIEYVNQDQPCNTNDGSSLSEHCDSPGSSTLKKPSRIDNSDL 93
Query: 84 VFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWLQALKWHSDTKVAAKNRKSFLASED 143
+++ E+ + E E GRDY L+P E+W Q W+ A+ S S+
Sbjct: 94 IYDSSLEDPSN--TSEIIETLQEGRDYVLLPQEVWNQLRSWYGGGPTLARRVISSGLSQT 151
Query: 144 DMA-DVYPLQLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTT 202
++A +VYPL+L+L +M +++ ++ISKK+ EL +RAC+IF ++SE + IWD+ G
Sbjct: 152 ELAVEVYPLRLQLLLMPKSDHSAIRISKKETIRELHRRACEIFDLDSEHVRIWDYYGHQK 211
Query: 203 LYFLNDKNKFSKDCLRLSDHEILLE-LQIYGLSDSLKCR--------EGRKDEMAVQHSN 253
+ND +K D D +IL+E L I G S + +G + ++ S
Sbjct: 212 YSLMNDLDKTLDDANLQMDQDILVEVLDINGTLSSAHIQSAQENGLVDGDSTSILIEPSK 271
Query: 254 GSLTN-GSFGIVRNS--------------SITFSGRSGEAGCLGLTGLQNLGNTCFMNSA 298
SL G F RN+ + + +G + GLTGL NLGNTCFMNSA
Sbjct: 272 SSLAAAGGFSSSRNAFRTGSVEVSQSFDNTYSSTGVTTRGSTAGLTGLLNLGNTCFMNSA 331
Query: 299 LQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKS 358
+QCLVHTP+ YF DY +EIN NPLGM GE+ALAFGDLLRKLWAPG P++PR FK+
Sbjct: 332 IQCLVHTPEFASYFQEDYHQEINWQNPLGMVGELALAFGDLLRKLWAPGRTPIAPRPFKA 391
Query: 359 KLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQ 418
KLARFAPQFSG+NQHDSQELLAFLLDGLHEDLNRVK KPY ++D DGR DE++ADE+W+
Sbjct: 392 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYINSRDADGRPDEEVADEFWK 451
Query: 419 NHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTD 478
NH+ARNDSIIVD+CQGQYKSTLVCP+C KVSVTFDPFMYLSLPL T R +T+TV + D
Sbjct: 452 NHIARNDSIIVDVCQGQYKSTLVCPICNKVSVTFDPFMYLSLPLQFNTTRAITVTVFSCD 511
Query: 479 GTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISL 538
TA PS T+ V K G+ DLI+AL+ AC+L +E L +AEI N+ I R E+P +S
Sbjct: 512 KTALPSTITVNVSKQGRCRDLIQALTNACSLKQSEELKLAEIRNNFIHRLFEDPLIPLSS 571
Query: 539 IRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVS---YLA 595
I+DDD L AY+L K ++ L+ + ++ +++ + T G PL++ S L
Sbjct: 572 IKDDDHLAAYKLSKSSENTTLLRLVLRRRDQKAGERESTVQLKPCGTPLLSSASCGDALT 631
Query: 596 HGLDIRNLYLELLKPF----CIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSS 651
G I L +L PF + K ++++ +A T D V GG+
Sbjct: 632 KG-KIHCLVQNMLSPFRREESVGKKGNSDSSIPERRSARFNNTEEEDKV---GGLKKAKK 687
Query: 652 VKEVE-PPSDAELQFYLTDEKGI--VKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQY 708
+ S LQ D K I N M P + T V + + W+ +L Y
Sbjct: 688 SNSSDLGASKLSLQLIDEDNKTINLPDNEAEAMKLPSSAT-----VTIYLDWTPELSGMY 742
Query: 709 DTRLLSSFPEIFKSGFLPKRPQ-ESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASK 767
D L S PE+ K G K+ + E +SLY CLEAFL EEPL P++MW+CP C + QASK
Sbjct: 743 DITCLESLPEVLKYGPTTKKARSEPLSLYACLEAFLREEPLVPDEMWFCPQCNERRQASK 802
Query: 768 KLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYA 827
KLDLWRLPE+LVIHLKRFSYSR K+KLET+V+FP+ +LDL+ +VA+ N Y LYA
Sbjct: 803 KLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDLDLTKYVANKNLSQPQLYELYA 862
Query: 828 VSNHYGSMGGGHYTAFVH-HGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
++NHYG MG GHYTA + +WY+FDDSH+ I++D +K+ AAYVLFYRR
Sbjct: 863 LTNHYGGMGSGHYTAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRR 915
>sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana
GN=UBP10 PE=2 SV=2
Length = 923
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/900 (43%), Positives = 538/900 (59%), Gaps = 63/900 (7%)
Query: 14 RVDSDNSSSNNNNNDNDQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMK 73
R+ S+ +S + +N +++ RW+ QE + +++ + G S P
Sbjct: 26 RIVSELTSESEDNLKQGNLYFVISKRWYTSWQEYVENSANE-------CSTGESSEAPRP 78
Query: 74 IINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWLQALKWHSD-TKVAA 132
I N D++ E + + + + + V G DY LVP ++W + ++W+S +
Sbjct: 79 --GPIDNHDII-----ESDSDINDPQLRRLLVEGEDYVLVPKQVWKRLVEWYSGGPPIER 131
Query: 133 KNRKSFLASEDDMADVYPLQLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELL 192
K + +VYPL L L+ R+ + +++ K+ + EL+++ C + + E
Sbjct: 132 KLICQGFYTRSYSVEVYPLCLMLTDGRDESRTVIRLGKQASIRELYEKVCAMTGVPQEKA 191
Query: 193 HIWDFSGQTTLYFLN--DKNKFSKDCLRLSDHEILLELQ-----------IYGLSDSLKC 239
HIWD+ + L+ + L + D +IL+E+ G +L
Sbjct: 192 HIWDYFDKRKNGLLDPLSYKSLEESSLHM-DQDILVEVDGLSSSSQSAMSSTGNELALVP 250
Query: 240 REGRKDEMAVQH----SNGSLTNGSFGIVRNSSITFSGR-------SGEAGCLGLTGLQN 288
E + + + SNG T +F + + GR GE G GL GL N
Sbjct: 251 LEPSRSIVTIAGGPTLSNGHSTTSNFSLFPRITSEDDGRDSLSILGKGEKG--GLAGLSN 308
Query: 289 LGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGA 348
LGNTCFMNSALQCL HTP +V+YFL DY +IN DNPLGM GE+A+AFGDLL+KLW+ G
Sbjct: 309 LGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGR 368
Query: 349 APVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRS 408
V+PR FK+KLARFAPQFSG+NQHDSQELLAFLLDGLHEDLN+VK KPY E KD D R
Sbjct: 369 NAVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRP 428
Query: 409 DEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVR 468
D+++A+E W H ARNDS+IVD+CQGQYKSTLVCPVC K+S+TFDPFMYLS+PLPST R
Sbjct: 429 DDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTR 488
Query: 469 MMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRY 528
MT+TV DG+ P P+T+ VPK G DLI AL AC L +E+LL+AE+Y+H+I RY
Sbjct: 489 SMTITVFYCDGSRLPMPYTVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRY 548
Query: 529 LEEPADSISLIRDDDQLVAYRLRK--ENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIP 586
E P DS+S I+DD+ +VAYRL + + + + +H E + S G P
Sbjct: 549 FEIPLDSLSAIKDDEHIVAYRLNQIPKGSRKAKLEILHGGQERAVLDSVRGSDVKLFGTP 608
Query: 587 LVAKVSYLA-HGLDIRNLYLELLKPF-CIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTG 644
V V+ G DI + L P + A +N G A V + +G
Sbjct: 609 FVTYVNTEPLSGTDIDAVISGFLSPLHKVHAPSKIHNGSDNGHLADATVDQ------ASG 662
Query: 645 GVATPSSVKEVEPPSDAELQF--YLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSG 702
+++P + E++ SD EL F +LTDE+G+ N K + +E G VLV W+
Sbjct: 663 ILSSPDT--EIDNASDRELSFRIFLTDERGL--NIKPLQSESSISPGT--VTRVLVEWNE 716
Query: 703 KLIEQYDTRLLSSFPEIFKSGFLPKRP-QESVSLYKCLEAFLTEEPLGPEDMWYCPGCKK 761
E+YD+ LS PE+ K+ F K+ QES+SL+ CLEAFL EEPLGP+DMW+CP CK+
Sbjct: 717 GEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLAEEPLGPDDMWFCPSCKE 776
Query: 762 HCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSN 821
H QA+KKLDLW+LP+ILV HLKRF+YSR+ KNK++T+V+FPV +LDLS +V + N + S
Sbjct: 777 HRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNGQ-SY 835
Query: 822 RYMLYAVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRV 880
Y LYAVSNHYG +GGGHYTA+ +WY FDDSHV +++ +I+ SAAYVLFYRRV
Sbjct: 836 LYELYAVSNHYGGLGGGHYTAYAKLIDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYRRV 895
>sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana
GN=UBP9 PE=2 SV=1
Length = 910
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/897 (43%), Positives = 540/897 (60%), Gaps = 73/897 (8%)
Query: 22 SNNNNNDNDQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNS 81
+ + +N + +Y V + W + E S K+ Y + + + P I N+
Sbjct: 33 TESEDNLKEGNLYFVISKRWYTSWEKYVEQSTKE----YISGESSEASRPGPIDNH---- 84
Query: 82 DLVFNLRREEEVSLQNGENGEVGVSGRDYALVPGEMWLQALKWHSD-TKVAAKNRKSFLA 140
D++ E E + + + + + DY LVP E+W + ++W+S + K
Sbjct: 85 DII-----ESESDVNDPQLRRLLMERVDYVLVPQEVWKRLVEWYSGGPPIERKLICQGFY 139
Query: 141 SEDDMADVYPLQLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQ 200
+ +VYPL L L+ R+ + +++ K+ + EL+++ C + + E HIWD+ +
Sbjct: 140 TRSYSVEVYPLCLMLTDGRDESRTVIRLGKQASIRELYEKVCALTGVPQEKAHIWDYFDK 199
Query: 201 TTLYFLNDKNKFSKDCLRLS-DHEILLELQIYGLSDSLKCREGRKDEMAV---------- 249
L+ + S + L D +ILLE+ G S S +E+A+
Sbjct: 200 RKNGLLDSLSYKSLEESSLHMDQDILLEVD--GSSSSQSAMSSTGNELALVPLEPSRSSV 257
Query: 250 ------QHSNGSLTNGSFGIVR--------NSSITFSGRSGEAGCLGLTGLQNLGNTCFM 295
SNG T +F + ++S++ G+ GE G GL GL NLGNTCFM
Sbjct: 258 TIAGGPTLSNGHSTTSNFSLFPRITSEDDGSNSLSILGK-GEKG--GLAGLSNLGNTCFM 314
Query: 296 NSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRT 355
NSALQCL HTP +V+YFL DY +IN DNPLGM GE+A+AFGDLL+KLW+ G V+PR
Sbjct: 315 NSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNSVAPRA 374
Query: 356 FKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADE 415
FK+KLARFAPQFSG+NQHDSQELLAFLLDGLHEDLN+VK KPY E KD D R D+++A+E
Sbjct: 375 FKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEE 434
Query: 416 YWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVV 475
W H ARNDS+IVD+CQGQYKSTLVCP C K+S+TFDPFMYLS+PLPST R MT+TV
Sbjct: 435 LWNYHKARNDSVIVDVCQGQYKSTLVCPACGKISITFDPFMYLSVPLPSTLTRSMTVTVF 494
Query: 476 NTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADS 535
DG+ P P+T+ VPK G DLI AL AC L +E+LL+AE+Y+H+I +Y E P DS
Sbjct: 495 YCDGSHLPMPYTVIVPKNGSIRDLITALGTACLLAEDESLLLAEVYDHKIFKYFENPLDS 554
Query: 536 ISLIRDDDQLVAYRLR---KENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVS 592
+S I+DD+ +VAYRL K + K L + +H + + G P V V+
Sbjct: 555 LSSIKDDEHIVAYRLNQMPKGSGKAKLEI-LHGGQKRPILESVRGRDVKLFGTPFVTYVN 613
Query: 593 YLA-HGLDIRNLYLELLKPFC-IPAKDTFNNNVTAG---STAIEEVTRIVDNVPVTGGVA 647
G DI + L P + A +N G ++E + I ++
Sbjct: 614 TEPLSGADIDAVLSRFLSPLHKVHAPSKIHNGSENGHLPDATVDEASEI---------LS 664
Query: 648 TPSSVKEVEPPSDAELQF--YLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLI 705
+P + E++ SD EL F +LTDE+G+ N K + +E G+ VLV W+
Sbjct: 665 SPDT--EIDDASDRELSFRIFLTDERGL--NFKPLQSESSISLGIA--TRVLVEWNEGEH 718
Query: 706 EQYDTRLLSSFPEIFKSGFLPKRP-QESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQ 764
E+YD+ LS PE+ K+ F K+ QES+SL+ CLEAFL EEPLGP+DMW+CP CK+H Q
Sbjct: 719 ERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQ 778
Query: 765 ASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYM 824
A+KKLDLW+LP+ILV HLKRF+YSR+ KNK++T+V+FPV +LDLS +V + ND+ S Y
Sbjct: 779 ANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNDQ-SYLYE 837
Query: 825 LYAVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRV 880
LYAVSNHYG +GGGHYTA+ +WY FDDSHV +++ +IK SAAYVLFYRRV
Sbjct: 838 LYAVSNHYGGLGGGHYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFYRRV 894
>sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis
thaliana GN=UBP11 PE=3 SV=2
Length = 892
Score = 617 bits (1591), Expect = e-175, Method: Compositional matrix adjust.
Identities = 356/803 (44%), Positives = 495/803 (61%), Gaps = 54/803 (6%)
Query: 107 GRDYALVPGEMWLQALKWH-SDTKVAAKNRKSFLASEDDMADVYPLQLRLSVMRETNSLG 165
G DY LV E+W + +KW+ V K ++ +VY L L L+ R+ ++
Sbjct: 103 GVDYTLVQQEVWRKLVKWYKGGPPVPRKLISQGFYTKSFSVEVYLLCLTLTDSRDESTTI 162
Query: 166 VKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLS-DHEI 224
+++SK+ + +L++ C + E IWD+ + L+ ++ S + L + +I
Sbjct: 163 IRLSKQASIGQLYEMVCAGKGVAKEKARIWDYFEKKKSVLLDPSSEQSVEEAGLQFNQDI 222
Query: 225 LLELQ-------IYGLSDS----LKCREGRKDEMAVQHSNGSLTNGSFGIVRNSSITFSG 273
LLE+ + L+++ + R D M + G+L+NG + +F G
Sbjct: 223 LLEVDGSASSQFVMSLAENELAMVPLEPMRSDAMDIVRGGGTLSNGHSNGFK---FSFFG 279
Query: 274 RS-----------GEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINH 322
R+ G+ GL GLQNLGNTCFMNS LQCL HTP +V+YFL DY +IN
Sbjct: 280 RNTFKDDVSSRTFGKGEKRGLGGLQNLGNTCFMNSTLQCLAHTPPIVEYFLQDYRSDINA 339
Query: 323 DNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFL 382
NPLGM GE+A+AFG+LLRKLW+ G V+PR FK+KLARFAPQFSG+NQHDSQE+LAFL
Sbjct: 340 KNPLGMRGELAIAFGELLRKLWSSGQNTVAPRAFKTKLARFAPQFSGYNQHDSQEMLAFL 399
Query: 383 LDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVC 442
LDGLHEDLN+VK KPY EAKD DGR D+++A+E W+ H ARNDS+IVD+ QGQYKSTLVC
Sbjct: 400 LDGLHEDLNKVKRKPYIEAKDSDGRPDDEVAEEKWKYHKARNDSVIVDVFQGQYKSTLVC 459
Query: 443 PVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRA 502
P C K+S+TFDPFMYLSLPLPS+ R MT+TV DG+ P P+T+TVPK G DL A
Sbjct: 460 PDCGKISITFDPFMYLSLPLPSSRTRSMTVTVFYGDGSHLPMPYTVTVPKDGSCRDLSNA 519
Query: 503 LSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVV- 561
L AC L +E+LL+AE+Y+H++ +Y E P + ++ I+D++ +VAYR K+ K P V
Sbjct: 520 LGTACCLDNDESLLLAEVYDHKVFKYYENPRELLNGIKDNEHIVAYRF-KQMHKGPGKVK 578
Query: 562 --FMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLA-HGLDIRNLYLELLKPFCIPAKDT 618
+H + E+ G P G PLV ++ G DI LL P
Sbjct: 579 LEILHGEQEKSSDRG-----PKCFGTPLVTYINKEPLSGTDIATSISGLLSPLRRVHMSC 633
Query: 619 FNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSK 678
N+ +E +R + ++ T + +E+ S + L+ Y + +++
Sbjct: 634 VVNSGNENGHVPDESSRSI----LSRDTETEDNDREL---SLSLLRDYYSFNLQPLESDS 686
Query: 679 IVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKC 738
+V P ++T VLV W+ K E+YD+ L+ P++ K+ K QE +SL+ C
Sbjct: 687 VV--NPGSVT------KVLVKWNEKEHEKYDSSYLNDLPKVHKNVLAKKTMQEGISLFSC 738
Query: 739 LEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETY 798
LEAFL EEPLGP+DMWYCPGCK+H QA+KKLDLW+LP+ILV HLKRF+YSR+ KNK++T
Sbjct: 739 LEAFLAEEPLGPDDMWYCPGCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYFKNKIDTL 798
Query: 799 VDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVH-HGGGQWYDFDDS 857
V+F + +LDLS +V + D S Y LYA+SNHYG +GGGHYTA+ +WY+FDDS
Sbjct: 799 VNFHIHDLDLSKYVKN-EDGQSYLYELYAISNHYGGLGGGHYTAYAKLMDETKWYNFDDS 857
Query: 858 HVYPISQDKIKTSAAYVLFYRRV 880
V +++ +IKTSAAYVLFY+RV
Sbjct: 858 RVSAVNESEIKTSAAYVLFYQRV 880
>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus
GN=Usp4 PE=1 SV=1
Length = 961
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 310/842 (36%), Positives = 432/842 (51%), Gaps = 84/842 (9%)
Query: 109 DYALVPGEMWLQALKWHS----DTKVAAKNRKSFLASEDDMADVYPLQLRLSVMRE-TNS 163
DY LVP E W + L W+ + K + L + +VY L+L+L + TN
Sbjct: 92 DYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNV 151
Query: 164 LGVKISKKDNAVELFKRACKIFSIESEL-LHIWDFSGQTTLYFLNDKNKFSKDCLRLSDH 222
L SK D + K K+F+I +E +W+ T L+ + +D
Sbjct: 152 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQ 211
Query: 223 EILLELQ-------------------IYGLSDSLKCREGRKDEMAVQH-SNGSLTNGSFG 262
+++E Q + S K M+ +NG TN S
Sbjct: 212 VLVIEPQNEDGTWPRQTLQSKSSTAPSRNFTTSSKPSASPYSSMSASLIANGDSTNSSG- 270
Query: 263 IVRNSSITFSGR--SGEAGCL---------GLTGLQNLGNTCFMNSALQCLVHTPKLVDY 311
+ NS ++ G S C GL GL NLGNTCFMNSALQCL +T L +Y
Sbjct: 271 -MHNSGVSRGGAGFSASYNCQEPPSPHIQPGLCGLGNLGNTCFMNSALQCLSNTGPLTEY 329
Query: 312 FLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGF 370
FL D Y EIN DNPLGM GEIA A+ +L++++W+ V+PR FK+++ RFAPQFSG+
Sbjct: 330 FLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGY 389
Query: 371 NQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVD 430
Q DSQELLAF+LDGLHEDLNRVK KPY E KD +GR D +A E W+NH RNDS+IVD
Sbjct: 390 QQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENHRLRNDSVIVD 449
Query: 431 LCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITV 490
G +KSTLVCP C KVSVTFDPF YL+LPLP R+M + +V D +P + +TV
Sbjct: 450 TFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPHCRPIQYRVTV 509
Query: 491 PKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRL 550
P G DL ALS + E ++V ++YNH+ + + + +S I D + Y +
Sbjct: 510 PLMGAISDLCEALSKLSGIAA-ENMVVTDVYNHRFHKIFQM-DEGLSHITPRDDIFVYEI 567
Query: 551 RKENDKDPLVVFMHQQLEEQYIHGKLTSCPNAL-GIPLVAKVSYLAHGLDIRNLYLEL-- 607
+ + E+ TS L G PL+ VS H L + +LY +
Sbjct: 568 CTTPMDGSEYITLPVYFREKKSRPSSTSSGAVLYGQPLL--VSVPKHRLTLESLYQAVCE 625
Query: 608 ------------------LKP-FCIPAKDTFN------NNVTAGSTAIEEVTRIVDNVPV 642
L+P C ++ ++ ++ G + EV ++
Sbjct: 626 RISRYIKQPLPEEFLSSPLEPGACNGSRGSYEGDEEEMDHQEEGKEQLSEVEESGED--S 683
Query: 643 TGGVATPSSVKEVEPPSDAEL-QFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWS 701
GG T ++ K PP L F L + G + + + + + + + W
Sbjct: 684 QGGDPTETTQKAKGPPRHKRLFTFSLVNSCGTADINSLATDG--KLLKLNSRSTLAIDWD 741
Query: 702 GKLIEQYDTRLLSSFPEIFKSGFLP-KRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCK 760
+ Y S E S P K+ + +++L +C+E F T E LG D WYCP CK
Sbjct: 742 SETRSLYFDEQESEACEKHTSMSQPQKKKKAAIALRECIELFTTMETLGEHDPWYCPTCK 801
Query: 761 KHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLS 820
KH QA+KK DLW LP+ILV+HLKRFSY+R+ ++KL+T V+FPV L++S V D+ +
Sbjct: 802 KHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVC---DRAA 858
Query: 821 NRYM--LYAVSNHYGSMGGGHYTAFVHHG-GGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877
Y+ L AVSNHYG+MG GHYTA+ + G+WY FDDS V S+D+I T AAYVLFY
Sbjct: 859 RPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFY 918
Query: 878 RR 879
+R
Sbjct: 919 QR 920
>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2
SV=1
Length = 963
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 324/916 (35%), Positives = 448/916 (48%), Gaps = 98/916 (10%)
Query: 34 YLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV 93
YL+ RW++ ++ DS +Y + Y GP I NS L + E
Sbjct: 35 YLIDSRWFKQWKKYVGFDS----WDMYNVGEHNLYPGP------IDNSGLFSD---PESQ 81
Query: 94 SLQNGENGEVGVSGRDYALVPGEMWLQALKWHS----DTKVAAKNRKSFLASEDDMADVY 149
+L+ E + DY LVP E W + L W+ + K + L + +VY
Sbjct: 82 TLK-----EHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVY 136
Query: 150 PLQLRLSVMRE-TNSLGVKISKKDNAVELFKRACKIFSIESEL-LHIWDFSGQTTLYFLN 207
L+L+L + TN L SK D + K K+F+I +E +W+ T L+
Sbjct: 137 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLS 196
Query: 208 DKNKFSKDCLRLSDHEILLELQIYGLSDSLKCREGRKDEMAVQHS--------------- 252
+ +D +++E Q D R+ ++ + + S
Sbjct: 197 KLDNTVQDAGLYQGQVLVIEPQN---EDGTWPRQTQQSKSSTAPSRNFTTSPKSSASPYS 253
Query: 253 --------NGSLTNGSFGIVRNSSITFSGRSGEAGCL---------GLTGLQNLGNTCFM 295
NG TN S S SG S C GL GL NLGNTCFM
Sbjct: 254 SVSASPIANGDSTNTSGMHSSGVSRGGSGFSASYNCQESPLTHVQPGLCGLGNLGNTCFM 313
Query: 296 NSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPR 354
NSALQCL +T L DYFL D Y EIN DNPLGM GEIA A+ +L++++W+ A V+PR
Sbjct: 314 NSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR 373
Query: 355 TFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIAD 414
FK+++ RFAPQFSG+ Q DSQELLAFLLDGLHEDLNRVK KPY E KD +GR D +A
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAK 433
Query: 415 EYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTV 474
E W+NH RNDS+IVD G +KSTLVCP C KVSVTFDPF YL+LPLP R+M + +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEIFL 493
Query: 475 VNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPAD 534
V D +P+ + + VP G DL ALS + E ++V ++YNH+ + + +
Sbjct: 494 VPADPRCRPTQYRVVVPLMGAVSDLCEALSKLSGIAA-ENMVVTDVYNHRFHKIFQM-DE 551
Query: 535 SISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNAL-GIPLVAKVSY 593
++ I D + Y + + V + E+ TS L G PL+ VS
Sbjct: 552 GLNHIMPRDDIFVYEVCSTSPDGSECVTLPVYFRERKSRPSSTSTGAVLYGQPLL--VSV 609
Query: 594 LAHGLDIRNLY-----------------------LEL-----LKPFCIPAKDTFNNNVTA 625
H L + +LY LEL + C + +
Sbjct: 610 PKHKLTLESLYQAVCERISRYIKQPLPDESGSSPLELGACNGSRSGCAGEDEEEMEHQEE 669
Query: 626 GSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMNEPI 685
G + E D+ P + + P F L + G + + +
Sbjct: 670 GREQLSETEGSGDDEPGSDHGEATQKKNKGRPCPRRLFTFSLVNSYGTADINSLATDG-- 727
Query: 686 AMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLP-KRPQESVSLYKCLEAFLT 744
+ + + + W + Y S E S P K+ + +V+L C+E F T
Sbjct: 728 KLLKLNSRSTLAIDWDSETRSCYYNEQESETYEKHVSMLQPQKKKKTAVALRDCIELFTT 787
Query: 745 EEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVD 804
E LG D WYCP CKKH QA+KK DLW LP+ILV+HLKRFSY+R+ ++KL+T V+FPV
Sbjct: 788 METLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVR 847
Query: 805 NLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHG-GGQWYDFDDSHVYPIS 863
L++S V + + Y L AVSNHYG+MG GHYTA+ + G+WY FDDS+V
Sbjct: 848 GLNMSEFVCDPSAR-PYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLAC 906
Query: 864 QDKIKTSAAYVLFYRR 879
+D+I T AAYVLFY+R
Sbjct: 907 EDQIVTKAAYVLFYQR 922
>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4
PE=1 SV=3
Length = 963
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 262/630 (41%), Positives = 355/630 (56%), Gaps = 39/630 (6%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLL 340
GL GL NLGNTCFMNSALQCL +T L DYFL D Y EIN DNPLGM GEIA A+ +L+
Sbjct: 300 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 359
Query: 341 RKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAE 400
+++W+ A V+PR FK+++ RFAPQFSG+ Q DSQELLAFLLDGLHEDLNRVK KPY E
Sbjct: 360 KQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLE 419
Query: 401 AKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSL 460
KD +GR D +A E W+NH RNDS+IVD G +KSTLVCP C KVSVTFDPF YL+L
Sbjct: 420 LKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL 479
Query: 461 PLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEI 520
PLP R+M + +V D +P+ + +TVP G DL ALS + E ++VA++
Sbjct: 480 PLPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIAA-ENMVVADV 538
Query: 521 YNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCP 580
YNH+ + + + ++ I D + Y + + V + E+ TS
Sbjct: 539 YNHRFHKIFQM-DEGLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSA 597
Query: 581 NAL-GIPLVAKVSYLAHGLDIRNLYLELLKPFC----IPAKDTFNNN------------- 622
+AL G PL+ V H L + +LY + P D F ++
Sbjct: 598 SALYGQPLLLSVP--KHKLTLESLYQAVCDRISRYVKQPLPDEFGSSPLEPGACNGSRNS 655
Query: 623 -----------VTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEK 671
G + E ++ P T + +P F L +
Sbjct: 656 CEGEDEEEMEHQEEGKEQLSETEGSGEDEPGNDPSETTQKKIKGQPCPKRLFTFSLVNSY 715
Query: 672 GIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQE 731
G + + + + + + + W + Y S E S P++ ++
Sbjct: 716 GTADINSLAADG--KLLKLNSRSTLAMDWDSETRRLYYDEQESEAYEKHVSMLQPQKKKK 773
Query: 732 S-VSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF 790
+ V+L C+E F T E LG D WYCP CKKH QA+KK DLW LP+ILV+HLKRFSY+R+
Sbjct: 774 TTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRY 833
Query: 791 SKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHG-GG 849
++KL+T V+FP+ L++S V +L+ + Y L AVSNHYG+MG GHYTA+ + G
Sbjct: 834 WRDKLDTVVEFPIRGLNMSEFVCNLSAR-PYVYDLIAVSNHYGAMGVGHYTAYAKNKLNG 892
Query: 850 QWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
+WY FDDS+V S+D+I T AAYVLFY+R
Sbjct: 893 KWYYFDDSNVSLASEDQIVTKAAYVLFYQR 922
Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 23/162 (14%)
Query: 34 YLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV 93
YL+ RW++ ++ DS +Y + + GP I N+ SD E
Sbjct: 35 YLIDSRWFKQWKKYVGFDS----WDMYNVGEHNLFPGP--IDNSGLFSD-------PESQ 81
Query: 94 SLQNGENGEVGVSGRDYALVPGEMWLQALKWH----SDTKVAAKNRKSFLASEDDMADVY 149
+L+ E + DY LVP E W + L W+ + K + L + +VY
Sbjct: 82 TLK-----EHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVY 136
Query: 150 PLQLRLSVMRE-TNSLGVKISKKDNAVELFKRACKIFSIESE 190
L+L+L + TN L SK D + K K+F+I +E
Sbjct: 137 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAE 178
>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4
PE=2 SV=1
Length = 963
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/630 (41%), Positives = 356/630 (56%), Gaps = 39/630 (6%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLL 340
GL GL NLGNTCFMNSALQCL +T L DYFL D Y EIN DNPLGM GEIA A+ +L+
Sbjct: 300 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 359
Query: 341 RKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAE 400
+++W+ A V+PR FK+++ RFAPQFSG+ Q DSQELLAFLLDGLHEDLNRVK KPY E
Sbjct: 360 KQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLE 419
Query: 401 AKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSL 460
KD +GR D +A E W+NH RNDS+IVD G +KSTLVCP C KVSVTFDPF YL+L
Sbjct: 420 LKDANGRPDVVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTL 479
Query: 461 PLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEI 520
PLP R+M + +V D +P+ + +TVP G DL ALS + E ++VA++
Sbjct: 480 PLPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMGAVSDLCEALSRLSGIAA-ENMVVADV 538
Query: 521 YNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCP 580
YNH+ + + + ++ I D + Y + + V + E+ TS
Sbjct: 539 YNHRFHKIFQM-DEGLNHIMPRDDIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSA 597
Query: 581 NAL-GIPLVAKVSYLAHGLDIRNLYLELLKPFC----IPAKDTFNNN------------- 622
+AL G PL+ V H L + +LY + P D F ++
Sbjct: 598 SALYGQPLLLSVP--KHKLTLESLYQAVCDRISRYVKQPLPDEFGSSPLEPGACNGSRNS 655
Query: 623 -----------VTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEK 671
G + E ++ P + T + +P F L +
Sbjct: 656 CEGEDEEEMEHQEEGKEQLSETEGSGEDEPGSDPSETTQKKIKGQPCPKRLFTFSLVNSY 715
Query: 672 GIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQE 731
G + + + + + + + W + Y S E S P++ ++
Sbjct: 716 GTADINSLAADG--KLLKLNSRSTLAMDWDSETRSLYYDEQESEAYEKHVSMLQPQKKKK 773
Query: 732 -SVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF 790
+V+L C+E F T E LG D WYCP CKKH QA+KK DLW LP+ILV+HLKRFSY+R+
Sbjct: 774 TTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKSDLWSLPKILVVHLKRFSYNRY 833
Query: 791 SKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHG-GG 849
++KL+T V+FP+ L++S V +L+ + Y L AVSNHYG+MG GHYTA+ + G
Sbjct: 834 WRDKLDTVVEFPIRGLNMSEFVCNLSAR-PYVYDLIAVSNHYGAMGVGHYTAYAKNKLNG 892
Query: 850 QWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
+WY FDDS+V S+D+I T AAYVLFY+R
Sbjct: 893 KWYYFDDSNVSLASEDQIVTKAAYVLFYQR 922
Score = 36.6 bits (83), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 109 DYALVPGEMWLQALKWH----SDTKVAAKNRKSFLASEDDMADVYPLQLRLSVMRE-TNS 163
DY LVP E W + L W+ + K + L + +VY L+L+L + TN
Sbjct: 92 DYVLVPTEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNV 151
Query: 164 LGVKISKKDNAVELFKRACKIFSIESE 190
L SK D + K K+F+I +E
Sbjct: 152 LSCHFSKADTIATIEKEMRKLFNIPAE 178
>sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15
PE=2 SV=1
Length = 952
Score = 321 bits (823), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 228/640 (35%), Positives = 331/640 (51%), Gaps = 46/640 (7%)
Query: 34 YLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV 93
YLV RW++ ++ DS K Y Y GP I NS L LR +
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDK----YQMGDQNVYPGP------IDNSGL---LRDGDAQ 77
Query: 94 SLQNGENGEVGVSGRDYALVPGEMWLQALKWHS----DTKVAAKNRKSFLASEDDMADVY 149
SL+ E + DY L+P E W + + W++ +A K + + + +VY
Sbjct: 78 SLK-----EHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVY 132
Query: 150 PLQLRLSVMRETNSLGVK-ISKKDNAVELFKRACKIFSIESEL-LHIWDFSGQTTLYFLN 207
+L+L N++ + SK D + K KIF+I E +W+ T LN
Sbjct: 133 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKYMSNTFEPLN 192
Query: 208 DKNKFSKDCLRLSDHEILLELQIYGLSDSLKCREGRKDEMAVQHSNGSLTNGSFGIVRNS 267
+ +D +++E + D R V++SN L S+ +N
Sbjct: 193 KPDSTIQDAGLYQGQVLVIEQKN---EDGTWPRGPSTPN--VKNSNYCLP--SYTAYKNY 245
Query: 268 SITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPL 326
+ GR+ E GL GL NLGNTCFMNSA QCL +TP L +YFL D Y E+N DNPL
Sbjct: 246 DYSEPGRNNEQP--GLCGLSNLGNTCFMNSAFQCLSNTPPLTEYFLNDKYQEELNFDNPL 303
Query: 327 GMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGL 386
GM GEIA ++ +L++++W+ + V+PR FK+++ RFAPQFSG+ Q D QELLAFLLDGL
Sbjct: 304 GMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGL 363
Query: 387 HEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCK 446
HEDLNR++ KPY + KD DGR D+ +A+E W+NHL RNDSIIVD+ G +KSTLVCP C
Sbjct: 364 HEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECA 423
Query: 447 KVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIA 506
K+SVTFDPF YL+LPLP R + + +V D KP + + VPK G DL ALS+
Sbjct: 424 KISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSLL 483
Query: 507 CALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQ 566
+ ++ ++V +IYNH+ R +++S I + D + + + +D V +
Sbjct: 484 SGVPADK-MIVTDIYNHRFHRIFAM-DENLSSIMERDDIYVFEININRTEDTEHVIIPVC 541
Query: 567 LEEQYIHGKLT--SCPNALGIPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVT 624
L E++ H T + + G P + V + NL LL C K + + T
Sbjct: 542 LREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNL---LLVRMCRYVKISTDTEDT 598
Query: 625 AGSTAIEEVTRIVDNVPVTGGV---ATPSSVKEVEPPSDA 661
GS + I N P G+ +PS ++ EP ++
Sbjct: 599 EGSLHCCKDQNINGNGP--NGIHEEGSPSEMETDEPDDES 636
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/155 (58%), Positives = 114/155 (73%), Gaps = 4/155 (2%)
Query: 726 PKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRF 785
PK+P V L C+E F T+E LG ED WYCP CK+H QA+KKLDLW LP +LV+HLKRF
Sbjct: 752 PKKP--FVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809
Query: 786 SYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFV- 844
SYSR+ ++KL+T VDFP+++LD+S + + N RY L AVSNHYG MGGGHYTAF
Sbjct: 810 SYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPC-RYNLIAVSNHYGGMGGGHYTAFAK 868
Query: 845 HHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
+ G+WY FDDS V S+D+I + AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903
>sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus
GN=Usp15 PE=1 SV=1
Length = 952
Score = 319 bits (818), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 226/638 (35%), Positives = 326/638 (51%), Gaps = 50/638 (7%)
Query: 34 YLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV 93
YLV RW++ ++ DS K Y Y GP I NS L L+ +
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDK----YQMGDQNVYPGP------IDNSGL---LKDGDAQ 77
Query: 94 SLQNGENGEVGVSGRDYALVPGEMWLQALKWHS----DTKVAAKNRKSFLASEDDMADVY 149
SL+ E + DY L+P E W + + W++ +A K + + + +VY
Sbjct: 78 SLK-----EHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVY 132
Query: 150 PLQLRLSVMRETNSLGVK-ISKKDNAVELFKRACKIFSIESEL-LHIWDFSGQTTLYFLN 207
+L+L N++ + SK D + K KIF+I E +W+ T LN
Sbjct: 133 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLN 192
Query: 208 DKNKFSKDCLRLSDHEILLELQIYGLSDSLKCREGR--KDEMAVQHSNGSLTNGSFGIVR 265
+ +D +++E K +G + A N + S+ +
Sbjct: 193 KPDSTIQDAGLYQGQVLVIEQ---------KNEDGTWPRGPSAPNVKNSNYCLPSYTAYK 243
Query: 266 NSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDN 324
N + GR+ E GL GL NLGNTCFMNSA+QCL +TP L +YFL D Y E+N DN
Sbjct: 244 NYDYSEPGRNNEQP--GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDN 301
Query: 325 PLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLD 384
PLGM GEIA ++ +L++++W+ + V+PR FK+++ RFAPQFSG+ Q D QELLAFLLD
Sbjct: 302 PLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLD 361
Query: 385 GLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPV 444
GLHEDLNR++ KPY + KD DGR D+ +A+E W+NHL RNDSIIVD+ G +KSTLVCP
Sbjct: 362 GLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPE 421
Query: 445 CKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALS 504
C K+SVTFDPF YL+LPLP R + + +V D AKP + + VPK G DL ALS
Sbjct: 422 CAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKIGNILDLCTALS 481
Query: 505 IACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMH 564
+ ++ ++V +IYNH+ R +++S I + D + + + +D V +
Sbjct: 482 ALSGVPADK-MIVTDIYNHRFHRIFAM-DENLSSIMERDDIYVFEININRTEDTEHVVIP 539
Query: 565 QQLEEQYIHGKLT--SCPNALGIPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNN 622
L E++ H T + + G P + V + NL LL C K +
Sbjct: 540 VCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNL---LLLRMCRYVKMSTETE 596
Query: 623 VTAGSTAIEEVTRIVDNVPVTGGV---ATPSSVKEVEP 657
T G E I N P G+ +PS ++ EP
Sbjct: 597 ETDGPLRCCEDQNINGNGP--NGIHEEGSPSEMETDEP 632
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/155 (59%), Positives = 113/155 (72%), Gaps = 4/155 (2%)
Query: 726 PKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRF 785
PKRP V L C+E F T+E LG ED WYCP CK+H QA+KKLDLW LP +LV+HLKRF
Sbjct: 752 PKRP--FVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 809
Query: 786 SYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFV- 844
SYSR+ ++KL+T VDFP+ +LD+S + + N RY L AVSNHYG MGGGHYTAF
Sbjct: 810 SYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPC-RYNLIAVSNHYGGMGGGHYTAFAK 868
Query: 845 HHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
+ G+WY FDDS V S+D+I + AAYVLFY+R
Sbjct: 869 NKDDGKWYYFDDSSVSSASEDQIVSKAAYVLFYQR 903
>sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis
GN=usp15 PE=2 SV=2
Length = 982
Score = 318 bits (814), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 226/668 (33%), Positives = 338/668 (50%), Gaps = 82/668 (12%)
Query: 34 YLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV 93
YL+ RW++ ++ DS K Y Y GP I NS L L+ +
Sbjct: 31 YLIDSRWFKQWKKYVGFDSWDK----YQMGDQNVYPGP------IDNSGL---LKDTDTQ 77
Query: 94 SLQNGENGEVGVSGRDYALVPGEMWLQALKWHS----DTKVAAKNRKSFLASEDDMADVY 149
SL+ E + DY L+P E W + + W+S +A K + + + +VY
Sbjct: 78 SLK-----EHLIDELDYILLPTEGWNKLVSWYSVVESQQPIARKVVEQGMFVKHCKVEVY 132
Query: 150 PLQLRLSVMRETNSLGVKISKKDNAVELFKRACK-IFSIESEL-LHIWDFSGQTTLYFLN 207
+L+L N++ + K + +++ ++ + IFSI E +W+ T LN
Sbjct: 133 LTELKLCENGNMNNVVTRRFSKADTIDMIEKEMRTIFSIPDEKETRLWNKYMSNTFEPLN 192
Query: 208 DKNKFSKDCLRLSDHEILLELQIYGLSDSLKCREGRKDEMAVQHSNG------------- 254
+D +++E K +EG+ ++ S+G
Sbjct: 193 KPESTIQDAGLYQGQMLVIEQ---------KNQEGQWPRGSMPKSSGIPNFSTLPKISPS 243
Query: 255 SLTNG-----------------SFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNS 297
SL+N S+ +N + GR E GL GL NLGNTCFMNS
Sbjct: 244 SLSNNYNNFNSRIMKNSNYCLPSYAAYKNYEYSEPGRHNEQP--GLCGLSNLGNTCFMNS 301
Query: 298 ALQCLVHTPKLVDYFLGDYFR-EINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTF 356
A+QCL +TP L +YFL D ++ E+N DNPLGM GEIA ++ +L++++W+ + V+PR F
Sbjct: 302 AIQCLSNTPPLTEYFLNDKYQDELNMDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAF 361
Query: 357 KSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEY 416
K+++ RFAPQFSG+ Q D QELLAFLLDGLHEDLNR++ KPY + KD DGR D+ +A+E
Sbjct: 362 KTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEA 421
Query: 417 WQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVN 476
W+NH+ RNDSIIVD+ G +KSTLVCP C K+SVTFDPF YL+LPLP R + + +V
Sbjct: 422 WENHIKRNDSIIVDIFHGLFKSTLVCPECSKISVTFDPFCYLTLPLPMKKERALEVYLVR 481
Query: 477 TDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRY--LEEPAD 534
D AKP + + VPK G DL ALS + E ++V +IYNH+ R ++E
Sbjct: 482 MDPLAKPMQYKVIVPKIGNIMDLCTALSSLSGIAP-EKMVVTDIYNHRFHRIFAMDENLS 540
Query: 535 SISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNA--LGIPLVAKVS 592
SI + RDD + + + D + +++ ++ L E++ H + + G P + V
Sbjct: 541 SI-MERDDIYVFETSINRTEDTEQVIIPVY--LREKFRHTSYSHHHGSTLFGQPFLITV- 596
Query: 593 YLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGV---ATP 649
+ LY LL C K T + GS + + N P G+ +P
Sbjct: 597 --PRNITEDKLYNLLLLRMCRYVKATNDTEENDGSLHCNKEHTVNGNGP--NGIHEEGSP 652
Query: 650 SSVKEVEP 657
S ++ EP
Sbjct: 653 SEMETDEP 660
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 127/190 (66%), Gaps = 4/190 (2%)
Query: 692 EEVHVLVCWSGKLIEQY-DTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGP 750
E ++ + W KL +++ D F + F P++ + + L C+E F T+E LG
Sbjct: 745 ERSYLALDWDPKLKKKFFDENAAEDFEKHESVDFTPQK-KAFMKLKDCIELFTTKEKLGA 803
Query: 751 EDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLST 810
ED WYCP CK+H QA+KKLDLW LP +LV+HLKRFSYSR+ ++KL+T VDFP+ +LD+ST
Sbjct: 804 EDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMST 863
Query: 811 HVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFV-HHGGGQWYDFDDSHVYPISQDKIKT 869
+ + N Y L AVSNHYG MGGGHYTAF + G+WY FDDS V S+++I +
Sbjct: 864 FLINPNAGPCC-YNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEEQIVS 922
Query: 870 SAAYVLFYRR 879
AAYVLFY+R
Sbjct: 923 KAAYVLFYQR 932
>sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15
PE=1 SV=3
Length = 981
Score = 311 bits (796), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 228/660 (34%), Positives = 330/660 (50%), Gaps = 65/660 (9%)
Query: 34 YLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV 93
YLV RW++ ++ DS K Y Y GP I NS L L+ +
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDK----YQMGDQNVYPGP------IDNSGL---LKDGDAQ 77
Query: 94 SLQNGENGEVGVSGRDYALVPGEMWLQALKWHS----DTKVAAKNRKSFLASEDDMADVY 149
SL+ E + DY L+P E W + + W++ +A K + + + +VY
Sbjct: 78 SLK-----EHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVY 132
Query: 150 PLQLRLSVMRETNSLGVK-ISKKDNAVELFKRACKIFSIESEL-LHIWDFSGQTTLYFLN 207
+L+L N++ + SK D + K KIFSI E +W+ T LN
Sbjct: 133 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLN 192
Query: 208 DKNKFSKDCLRLSDHEILLELQ----IYGLSDSLKCREGRKD------------------ 245
+ +D +++E + + S G +
Sbjct: 193 KPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNN 252
Query: 246 --EMAVQHSNGSLTNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLV 303
V++SN L S+ +N + GR+ E GL GL NLGNTCFMNSA+QCL
Sbjct: 253 MNNRNVKNSNYCLP--SYTAYKNYDYSEPGRNNEQP--GLCGLSNLGNTCFMNSAIQCLS 308
Query: 304 HTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLAR 362
+TP L +YFL D Y E+N DNPLGM GEIA ++ +L++++W+ + V+PR FK+++ R
Sbjct: 309 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 368
Query: 363 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLA 422
FAPQFSG+ Q D QELLAFLLDGLHEDLNR++ KPY + KD DGR D+ +A+E W+NHL
Sbjct: 369 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 428
Query: 423 RNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAK 482
RNDSIIVD+ G +KSTLVCP C K+SVTFDPF YL+LPLP R + + +V D K
Sbjct: 429 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTK 488
Query: 483 PSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDD 542
P + + VPK G DL ALS + ++ ++V +IYNH+ R +++S I +
Sbjct: 489 PMQYKVVVPKIGNILDLCTALSALSGIPADK-MIVTDIYNHRFHRIFAM-DENLSSIMER 546
Query: 543 DQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLT--SCPNALGIPLVAKVSYLAHGLDI 600
D + + + +D V + L E++ H T + + G P + V +
Sbjct: 547 DDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKL 606
Query: 601 RNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGV---ATPSSVKEVEP 657
NL LL C K + T GS + I N P G+ +PS ++ EP
Sbjct: 607 YNL---LLLRMCRYVKISTETEETEGSLHCCKDQNINGNGP--NGIHEEGSPSEMETDEP 661
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/155 (58%), Positives = 114/155 (73%), Gaps = 4/155 (2%)
Query: 726 PKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRF 785
PK+P V L C+E F T+E LG ED WYCP CK+H QA+KKLDLW LP +LV+HLKRF
Sbjct: 781 PKKP--FVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 838
Query: 786 SYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFV- 844
SYSR+ ++KL+T VDFP+++LD+S + + N RY L AVSNHYG MGGGHYTAF
Sbjct: 839 SYSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPC-RYNLIAVSNHYGGMGGGHYTAFAK 897
Query: 845 HHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
+ G+WY FDDS V S+D+I + AAYVLFY+R
Sbjct: 898 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932
>sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15
PE=2 SV=1
Length = 981
Score = 307 bits (787), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 208/575 (36%), Positives = 301/575 (52%), Gaps = 55/575 (9%)
Query: 34 YLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV 93
YLV RW++ ++ DS K Y Y GP I NS L L+ +
Sbjct: 31 YLVDSRWFKQWKKYVGFDSWDK----YQMGDQNVYPGP------IDNSGL---LKDGDAQ 77
Query: 94 SLQNGENGEVGVSGRDYALVPGEMWLQALKWHS----DTKVAAKNRKSFLASEDDMADVY 149
SL+ E + DY L+P E W + + W++ +A K + + + +VY
Sbjct: 78 SLK-----EHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVY 132
Query: 150 PLQLRLSVMRETNSLGVK-ISKKDNAVELFKRACKIFSIESEL-LHIWDFSGQTTLYFLN 207
+L+L N++ + SK D + K KIF+I E +W+ T LN
Sbjct: 133 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLN 192
Query: 208 DKNKFSKDCLRLSDHEILLELQ----IYGLSDSLKCREGRKD------------------ 245
+ +D +++E + + S G +
Sbjct: 193 KPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNN 252
Query: 246 --EMAVQHSNGSLTNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLV 303
V++SN L S+ +N + GR+ E GL GL NLGNTCFMNSA+QCL
Sbjct: 253 INNRNVKNSNYCLP--SYTAYKNYDYSEPGRNNEQP--GLCGLSNLGNTCFMNSAIQCLS 308
Query: 304 HTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLAR 362
+TP L +YFL D Y E+N DNPLGM GEIA ++ +L++++W+ + V+PR FK+++ R
Sbjct: 309 NTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGR 368
Query: 363 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLA 422
FAPQFSG+ Q D QELLAFLLDGLHEDLNR++ KPY + KD DGR D+ +A+E W+NHL
Sbjct: 369 FAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLK 428
Query: 423 RNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAK 482
RNDSIIVD+ G +KSTLVCP C K+SVTFDPF YL+LPLP R + + +V D AK
Sbjct: 429 RNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAK 488
Query: 483 PSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDD 542
P + + VPK G DL ALS + ++ ++V +IYNH+ R +++S I +
Sbjct: 489 PMQYKVIVPKIGNILDLCTALSALSGVPADK-MIVTDIYNHRFHRIF-AVDENLSSIMER 546
Query: 543 DQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLT 577
D + + + +D V + L E++ H T
Sbjct: 547 DDIYVFEININRAEDTEHVVIPVCLREKFRHSSYT 581
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/155 (59%), Positives = 113/155 (72%), Gaps = 4/155 (2%)
Query: 726 PKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRF 785
PKRP V L C+E F T+E LG ED WYCP CK+H QA+KKLDLW LP +LV+HLKRF
Sbjct: 781 PKRP--FVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRF 838
Query: 786 SYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFV- 844
SYSR+ ++KL+T VDFP+ +LD+S + + N RY L AVSNHYG MGGGHYTAF
Sbjct: 839 SYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPC-RYNLIAVSNHYGGMGGGHYTAFAK 897
Query: 845 HHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
+ G+WY FDDS V S+D+I + AAYVLFY+R
Sbjct: 898 NKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 932
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4
PE=1 SV=3
Length = 962
Score = 300 bits (769), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 217/610 (35%), Positives = 297/610 (48%), Gaps = 63/610 (10%)
Query: 34 YLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV 93
YL+ RW++ ++ DS +Y + + GP I NS L + E
Sbjct: 35 YLIDSRWFKQWKKYVGFDS----WDMYNVGEHNLFPGP------IDNSGLFSD---PESQ 81
Query: 94 SLQNGENGEVGVSGRDYALVPGEMWLQALKWHS----DTKVAAKNRKSFLASEDDMADVY 149
+L+ E + DY LVP E W + L W+ + K + L + +VY
Sbjct: 82 TLK-----EHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVY 136
Query: 150 PLQLRLSVMRE-TNSLGVKISKKDNAVELFKRACKIFSIESEL-LHIWDFSGQTTLYFLN 207
L+L+L + TN L SK D + K K+F+I +E +W+ T L+
Sbjct: 137 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLS 196
Query: 208 DKNKFSKDCLRLSDHEILLELQIYGLSDSLKCREGRKDEMAVQHS--------------- 252
+ +D +++E Q D R+ + + + S
Sbjct: 197 KLDNTIQDAGLYQGQVLVIEPQN---EDGTWPRQSLQSKSSTAPSRNFTTSSKPSASPYC 253
Query: 253 --------NGSLTNGSFGIVRNSSITFSGRSGEAGCL---------GLTGLQNLGNTCFM 295
NG TN S S SG S C GL GL NLGNTCFM
Sbjct: 254 SVSASLIANGDSTNSSGMHSSGVSRGGSGFSASYNCQEPPSPHIQPGLCGLGNLGNTCFM 313
Query: 296 NSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPR 354
NSALQCL +T L +YFL D Y EIN DNPLGM GEIA A+ +L++++W+ V+PR
Sbjct: 314 NSALQCLSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPR 373
Query: 355 TFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIAD 414
FK+++ RFAPQFSG+ Q DSQELLAF+LDGLHEDLNRVK KPY E KD +GR D +A
Sbjct: 374 MFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAK 433
Query: 415 EYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTV 474
E W+NH RNDS+IVD G +KSTLVCP C KVSVTFDPF YL+LPLP R+M + +
Sbjct: 434 EAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFL 493
Query: 475 VNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPAD 534
V D +P + +TVP G DL ALS + E ++V ++YNH+ + +
Sbjct: 494 VPADPQCRPIQYRVTVPLMGAISDLCEALSKLSGIAA-ENMVVTDVYNHRFHKIFQMDEG 552
Query: 535 SISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYL 594
+ DD V D + E++ +S G PL+ VS
Sbjct: 553 LSHITPRDDIFVYEVCNTSMDGSECITLPVYFREKKSRPSSASSGAVLYGQPLL--VSVP 610
Query: 595 AHGLDIRNLY 604
H L + +LY
Sbjct: 611 KHKLTLESLY 620
Score = 172 bits (437), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 113/156 (72%), Gaps = 6/156 (3%)
Query: 727 KRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFS 786
K+ + +V+L +C+E F T E LG D WYCP CKKH QA+KK DLW LP+ILV+HLKRFS
Sbjct: 769 KKKKAAVALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFS 828
Query: 787 YSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYM--LYAVSNHYGSMGGGHYTAFV 844
Y+R+ ++KL+T V+FPV L++S V D+ + Y+ L AVSNHYG+MG GHYTA+
Sbjct: 829 YNRYWRDKLDTVVEFPVRALNMSEFVC---DRSARPYVYDLIAVSNHYGAMGVGHYTAYA 885
Query: 845 HHG-GGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
+ G+WY FDDS V S+D+I T AAYVLFY+R
Sbjct: 886 KNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQR 921
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11
PE=1 SV=3
Length = 963
Score = 288 bits (736), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 177/450 (39%), Positives = 245/450 (54%), Gaps = 43/450 (9%)
Query: 105 VSGRDYALVPGEMWLQALKWHS-DTKVAAKNRKSFLASEDDMADVYPLQLRLSVMRETNS 163
V G DY L+P W + W+ + RK +VYP++L ++ N
Sbjct: 150 VEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQKVEVYPVEL---LLVRHND 206
Query: 164 LG----VKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRL 219
LG V+ S D+ + + A + F +E + T L+ N + +
Sbjct: 207 LGKSHTVQFSHTDSIGLVLRTARERFLVEPQ--------EDTRLWAKNSEGSLDR----- 253
Query: 220 SDHEILLELQIYGLSDSLKCREGRKDEMAVQHSNGSLTNGSFGIVRNSSIT----FSGRS 275
L + I L +L+ G+ M + +G+ + ++ N+ F G+
Sbjct: 254 -----LYDTHITVLDAALET--GQLIIMETRKKDGTWPSAQLHVMNNNMSEEDEDFKGQP 306
Query: 276 GEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIAL 334
G + GL NLGNTCFMNSALQCL + P+L +YFL + Y E+N NPLGM GEIA
Sbjct: 307 G------ICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAE 360
Query: 335 AFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVK 394
A+ DL+++ W+ + P FK+K+ FA QF G+ QHDSQELL+FLLDGLHEDLNRVK
Sbjct: 361 AYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVK 420
Query: 395 CKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDP 454
K Y E D GR D+++A E WQNH RNDS+IVD G +KSTLVCP C VSVTFDP
Sbjct: 421 KKEYVELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDP 480
Query: 455 FMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNET 514
F YLS+PLP + R++ + + D KP + VPK GK DL ALS + E
Sbjct: 481 FCYLSVPLPISHKRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVALSKHTGIS-PER 539
Query: 515 LLVAEIYNHQIIRY--LEEPADSISLIRDD 542
++VA++++H+ + LEEP SI L RDD
Sbjct: 540 MMVADVFSHRFYKLYQLEEPLSSI-LDRDD 568
Score = 170 bits (430), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 131/202 (64%), Gaps = 13/202 (6%)
Query: 688 TGVPEEVH----VLVCWSGKLIEQY-DTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAF 742
T PEEVH + + W ++ ++Y D + + G++ K+ V L +C+E F
Sbjct: 731 TTSPEEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKK--APVRLQECIELF 788
Query: 743 LTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFP 802
T E L E+ WYCP CK+H A+KKLDLW LPEIL+IHLKRFSY++FS+ KL+T V+FP
Sbjct: 789 TTVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFP 848
Query: 803 VDNLDLSTHVAHLNDKLSN----RYMLYAVSNHYGSMGGGHYTAFV-HHGGGQWYDFDDS 857
+ +LD S V ++ SN +Y L AVSNHYG M GHYT F + GQW+ FDD+
Sbjct: 849 IRDLDFSEFVIQPQNE-SNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDN 907
Query: 858 HVYPISQDKIKTSAAYVLFYRR 879
V P+++++I++ AAYVLFY+R
Sbjct: 908 SVSPVNENQIESKAAYVLFYQR 929
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11
PE=2 SV=4
Length = 921
Score = 281 bits (719), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 176/466 (37%), Positives = 251/466 (53%), Gaps = 35/466 (7%)
Query: 105 VSGRDYALVPGEMWLQALKWHS--DTKVAAKNRKSFLASEDDMADVYPLQLRLSVMRET- 161
+ G DY L+P W + W+ D + + RK +VYPL+L L +
Sbjct: 99 LEGDDYVLLPAPAWNYMVSWYGLMDGQPPIE-RKVIELPGIRKVEVYPLELLLVQHSDME 157
Query: 162 NSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSD 221
+L ++ S D+ + + A + F +E + T L+ N + + C
Sbjct: 158 TALTIQFSYTDSVELVLQTAREQFLVEPQ--------EDTRLWTKNSEGSLDRLC----- 204
Query: 222 HEILLELQIYGLSDSLKCREGRKDEMAVQHSNGSLTNGSFGIVRNSSITFSGRSGEAGCL 281
QI L L+ G+ M ++ +G+ + + N G+ G
Sbjct: 205 -----NTQITLLDACLET--GQLVIMETRNKDGTWPSAQLCGMNNIPDEDEDFQGQPGIC 257
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLL 340
GLT NLGNTCFMNSALQCL + P+L +YFL + Y E+N NPLGM GE+A A+ DL+
Sbjct: 258 GLT---NLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLV 314
Query: 341 RKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAE 400
++ W+ + P FK+K+ FA QF G+ QHDSQELL+FLLDGLHEDLNRVK K Y E
Sbjct: 315 KQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVE 374
Query: 401 AKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSL 460
+G GR D ++A E WQNH RNDS+IVD G +KSTLVCP C VSVTFDPF YLS+
Sbjct: 375 LCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSV 434
Query: 461 PLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEI 520
PLP + R++ + V D KP + VPK G DL ALS ++ ++ ++VA++
Sbjct: 435 PLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVAPDK-MIVADV 493
Query: 521 YNHQIIRYLEEPADSISLIRDDDQLVAYRLRK-----ENDKDPLVV 561
++H+ + L + D +S I D D + Y + E +D +VV
Sbjct: 494 FSHRFYK-LYQLEDPLSGILDRDDIFVYEVTGRIEPVEGSRDDIVV 538
Score = 159 bits (403), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/161 (49%), Positives = 110/161 (68%), Gaps = 6/161 (3%)
Query: 723 GFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHL 782
G++ K+ V L +C++ F T E L E+ WYC CK+H A+KKLDLW LPE+L+IHL
Sbjct: 730 GYMLKK--SPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHL 787
Query: 783 KRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSN---RYMLYAVSNHYGSMGGGH 839
KRFS+S+ S+ KL+T V FP+ +LD S V ++ S +Y L AVSNHYG M GH
Sbjct: 788 KRFSFSKISREKLDTLVQFPIRDLDFSEFVIKPKNESSPDLYKYDLIAVSNHYGGMRDGH 847
Query: 840 YTAFV-HHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
YT F + GQW+ FDD+ V P+++++I++ AAYVLFY+R
Sbjct: 848 YTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 888
>sp|Q8NFA0|UBP32_HUMAN Ubiquitin carboxyl-terminal hydrolase 32 OS=Homo sapiens GN=USP32
PE=1 SV=1
Length = 1604
Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/454 (34%), Positives = 234/454 (51%), Gaps = 54/454 (11%)
Query: 105 VSGRDYALVPGEMWLQALKWHSDT----KVAAKNRKSFLASEDDMADVYPLQLRLSVMRE 160
+ GRDY +VP +W W+ + KN K+ + E ++ Y L LR
Sbjct: 554 IHGRDYEMVPEPVWRALYHWYGANLALPRPVIKNSKTDIP-ELELFPRYLLFLRQQPATR 612
Query: 161 TNSLGVKI----------------------SKKDNAVELFKRACKIFSIESELLHIWDFS 198
T + + S+ E+ + + I+ E + +W ++
Sbjct: 613 TQQSNIWVNMGNVPSPNAPLKRVLAYTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYN 672
Query: 199 GQTTLYFLNDKNKFSKDCLRLSDHEILLELQIYGLSDSLKCREGRKDEMAVQHSNGSLTN 258
+ L L+D+ DH++ + LK ++ + + V++ + S
Sbjct: 673 SENYLTLLDDE-----------DHKL----------EYLKIQDEQHLVIEVRNKDMSWPE 711
Query: 259 GSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFL-GDYF 317
I +S I E G TGL NLGNTCFMNS++QC+ +T L YF+ G +
Sbjct: 712 EMSFIANSSKIDRHKVPTEKGA---TGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHL 768
Query: 318 REINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQE 377
E+N NP+GM G +A +GDL+++LW+ V+P + +A++AP+F+GF Q DSQE
Sbjct: 769 YELNRTNPIGMKGHMAKCYGDLVQELWSGTQKNVAPLKLRWTIAKYAPRFNGFQQQDSQE 828
Query: 378 LLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYK 437
LLAFLLDGLHEDLNRV KPY E KD DGR D ++A E W NHL RN SI+VDL GQ +
Sbjct: 829 LLAFLLDGLHEDLNRVHEKPYVELKDSDGRPDWEVAAEAWDNHLRRNRSIVVDLFHGQLR 888
Query: 438 STLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFE 497
S + C C +SV FDPF +LSLPLP + + +TV+ DGT P + + + K+
Sbjct: 889 SQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLEITVIKLDGTT-PVRYGLRLNMDEKYT 947
Query: 498 DLIRALSIACALGVNETLLVAEIYNHQIIRYLEE 531
L + LS C L +E +L+AE++ I + ++
Sbjct: 948 GLKKQLSDLCGLN-SEQILLAEVHGSNIKNFPQD 980
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 727 KRPQ-ESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRF 785
+R Q E ++L CL AF +EE LG +M+YC CK HC A+KKLDLWRLP IL+IHLKRF
Sbjct: 1226 RRAQAEPINLDSCLRAFTSEEELGENEMYYCSKCKTHCLATKKLDLWRLPPILIIHLKRF 1285
Query: 786 SYSRFSKNKLETYVDFPVDNLDLST 810
+ K + V FP ++ D S
Sbjct: 1286 QFVNGRWIKSQKIVKFPRESFDPSA 1310
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 823 YMLYAVSNHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
Y LYA+S H G +GGGHY + + +WY ++DS + D+I T +AY+LFY +
Sbjct: 1510 YNLYAISCHSGILGGGHYVTYAKNPNCKWYCYNDSSCKELHPDEIDTDSAYILFYEQ 1566
>sp|O60079|UBP12_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp12 PE=1 SV=1
Length = 979
Score = 242 bits (618), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 160/518 (30%), Positives = 255/518 (49%), Gaps = 48/518 (9%)
Query: 109 DYALVPGEMWLQALKWHSDTKVAAKNRKSFLASEDD---MADVYPLQLRLSVMRETNSLG 165
D+ ++ ++W ++W+ L SE + +VYP L+++ TN++
Sbjct: 124 DFTIISRDVWDLLVRWYGLKGPEFPRETVNLGSESHPHLVVEVYPPIFSLTLL-STNAVD 182
Query: 166 ---------VKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKF---- 212
+ +S K +L + S+ S+ +W L+ D + F
Sbjct: 183 ANESHKPKKISLSSKSTLEDLLEGVKYTLSLPSDQFRLWRVDTDQPLHRTIDPSSFIKIN 242
Query: 213 SKDCLR-LSDHEILLELQIYG---------LSDSLKCREGRKDEMAVQHSNGSLTNGSFG 262
SK+ + L + L+EL + ++++ + + +Q N +N
Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAECMINETWPVDRALRLQFLIQQRNNQSSNEE-- 300
Query: 263 IVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFR-EIN 321
+ E G GL NLGNTC+MNSALQCL HT +L D+F D ++ ++N
Sbjct: 301 -----------QKQEKRVPGTCGLSNLGNTCYMNSALQCLTHTRELRDFFTSDEWKNQVN 349
Query: 322 HDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAF 381
NPLGM G++A F L++ L++P + +PR FK+ + +F F G+ Q DSQE LAF
Sbjct: 350 ESNPLGMGGQVASIFASLIKSLYSPEHSSFAPRQFKATIGKFNHSFLGYGQQDSQEFLAF 409
Query: 382 LLDGLHEDLNRVKCKPYAEAKD---GDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKS 438
LLDGLHEDLNR+ KPY D D ++ A+E W+ H RNDS+IVDL QG Y+S
Sbjct: 410 LLDGLHEDLNRIYQKPYTSKPDLYEVDEEKIKNTAEECWRLHKLRNDSLIVDLFQGMYRS 469
Query: 439 TLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITV-PKYGKFE 497
TLVCPVC VS+TFDPFM L+LPLP V T+T + D P + + K E
Sbjct: 470 TLVCPVCNTVSITFDPFMDLTLPLPVKQVWSHTVTFIPADTNLTPLAIEVVLESKAATIE 529
Query: 498 DLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISL-IRDDDQLVAYRLRK--EN 554
DL++ ++ +LV E Y + R+L + + S+ + I ++D++ Y L + E+
Sbjct: 530 DLVKYVAEKSGCSDYRKILVTETYKGRFYRFLTQLSKSLLMEISEEDEIYLYELERPYED 589
Query: 555 DKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVS 592
D ++V ++ ++ G P V ++S
Sbjct: 590 GSDDILVPVYHISDDSTNSANSYMSSRDFGHPFVLQLS 627
Score = 153 bits (386), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 105/155 (67%), Gaps = 9/155 (5%)
Query: 732 SVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFS 791
+++L CL+ F E LG ED WYCP CK+ QASK++++WR PEIL+ HLKRFS R
Sbjct: 824 TITLNDCLDEFEKTEQLGEEDPWYCPTCKEFRQASKQMEIWRCPEILIFHLKRFSSERRF 883
Query: 792 KNKLETYVDFPVDNLDLSTHVAHLNDKLSNR------YMLYAVSNHYGSMGGGHYTAFVH 845
++K++ V+FP+DNLD+S KLS + Y LYAV NHYG +GGGHYTAF
Sbjct: 884 RDKIDDLVEFPIDNLDMSMRTGSY--KLSEKENPKLIYELYAVDNHYGGLGGGHYTAFAK 941
Query: 846 H-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
+ GQ+Y FDDS V P+ ++ TSAAY+LFYRR
Sbjct: 942 NPDNGQFYCFDDSRVTPVCPEETVTSAAYLLFYRR 976
>sp|P35125|UBP6_HUMAN Ubiquitin carboxyl-terminal hydrolase 6 OS=Homo sapiens GN=USP6
PE=1 SV=2
Length = 1406
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 164/251 (65%), Gaps = 3/251 (1%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFL-GDYFREINHDNPLGMDGEIALAFGDLL 340
G TGL NLGNTCFMNS++QC+ +T L YF+ G + E+N NP+GM G +A +GDL+
Sbjct: 530 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLV 589
Query: 341 RKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAE 400
++LW+ V+P + +A++AP+F GF Q DSQELLAFLLDGLHEDLNRV KPY E
Sbjct: 590 QELWSGTQKSVAPLKLRRTIAKYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVE 649
Query: 401 AKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSL 460
KD DGR D ++A E W NHL RN SIIVDL GQ +S + C C +SV FDPF +LSL
Sbjct: 650 LKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSL 709
Query: 461 PLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEI 520
PLP + + +TV+ DGT P + + + K+ L + L C L +E +L+AE+
Sbjct: 710 PLPMDSYMDLEITVIKLDGTT-PVRYGLRLNMDEKYTGLKKQLRDLCGLN-SEQILLAEV 767
Query: 521 YNHQIIRYLEE 531
++ I + ++
Sbjct: 768 HDSNIKNFPQD 778
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 50/80 (62%)
Query: 731 ESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF 790
E ++L CL AF +EE LG +M+YC CK HC A+KKLDLWRLP L+IHLKRF +
Sbjct: 1029 EPINLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFLIIHLKRFQFVND 1088
Query: 791 SKNKLETYVDFPVDNLDLST 810
K + V F ++ D S
Sbjct: 1089 QWIKSQKIVRFLRESFDPSA 1108
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 823 YMLYAVSNHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
Y LYA+S H G + GGHY + + +WY ++DS + D+I T +AY+LFY +
Sbjct: 1312 YNLYAISCHSGILSGGHYITYAKNPNCKWYCYNDSSCEELHPDEIDTDSAYILFYEQ 1368
>sp|Q6J1Y9|UBP19_RAT Ubiquitin carboxyl-terminal hydrolase 19 OS=Rattus norvegicus
GN=Usp19 PE=1 SV=1
Length = 1357
Score = 240 bits (612), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/303 (43%), Positives = 181/303 (59%), Gaps = 6/303 (1%)
Query: 280 CL-GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFR-EINHDNPLGMDGEIALAFG 337
CL G TGL NLGNTCFMNS +Q L +T +L D+F F EIN++NPLG G +A+ F
Sbjct: 531 CLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFA 590
Query: 338 DLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKP 397
LLR LW P K+ +A A QF+G+ QHD+QE +AFLLDGLHEDLNR++ KP
Sbjct: 591 VLLRALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKP 650
Query: 398 YAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMY 457
Y E D DGR DE +A+E WQ H RNDS IVDL QGQYKS LVCPVC KVS+TFDPF+Y
Sbjct: 651 YTETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLY 710
Query: 458 LSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKY-GKFEDLIRALSIACALGVNETLL 516
L +PLP +++ + + +KP F ++V K +++ +LS + + E+L
Sbjct: 711 LPVPLPQKQ-KVLPIYYFAREPHSKPIKFLVSVSKENSSASEVLESLSQSVHVK-PESLR 768
Query: 517 VAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKL 576
+AE+ ++ R P+ S+ + D L+ + L VV + Q Q +
Sbjct: 769 LAEVIKNRFHRVF-LPSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQVPSIPI 827
Query: 577 TSC 579
+ C
Sbjct: 828 SKC 830
Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 93/155 (60%), Gaps = 9/155 (5%)
Query: 734 SLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFS-K 792
+L +CL F E L PE+ WYCP CK+H +ASK+L LWRLP +L++ LKRFS+ F +
Sbjct: 1098 TLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSFRSFIWR 1157
Query: 793 NKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQ-- 850
+K+ V+FPV NLDLS ++ Y LYAV NHYG M GGHYTA +
Sbjct: 1158 DKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPSDRSS 1217
Query: 851 ------WYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
W FDDS V + + ++ T AYVLFYRR
Sbjct: 1218 QRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1252
>sp|O94966|UBP19_HUMAN Ubiquitin carboxyl-terminal hydrolase 19 OS=Homo sapiens GN=USP19
PE=1 SV=2
Length = 1318
Score = 238 bits (608), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/303 (43%), Positives = 180/303 (59%), Gaps = 6/303 (1%)
Query: 280 CL-GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFR-EINHDNPLGMDGEIALAFG 337
CL G TGL NLGNTCFMNS +Q L +T +L D+F F EIN++NPLG G +A+ F
Sbjct: 492 CLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFA 551
Query: 338 DLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKP 397
LLR LW P K+ +A A QF+G+ QHD+QE +AFLLDGLHEDLNR++ KP
Sbjct: 552 VLLRALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKP 611
Query: 398 YAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMY 457
Y E D DGR DE +A+E WQ H RNDS IVDL QGQYKS LVCPVC KVS+TFDPF+Y
Sbjct: 612 YTETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLY 671
Query: 458 LSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGK-FEDLIRALSIACALGVNETLL 516
L +PLP +++ + + +KP F ++V K +++ +LS + + E L
Sbjct: 672 LPVPLPQKQ-KVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLR 729
Query: 517 VAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKL 576
+AE+ ++ R P+ S+ + D L+ + L VV + Q Q +
Sbjct: 730 LAEVIKNRFHRVF-LPSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQVPSVPI 788
Query: 577 TSC 579
+ C
Sbjct: 789 SKC 791
Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 93/155 (60%), Gaps = 9/155 (5%)
Query: 734 SLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFS-K 792
+L +CL F E L PE+ WYCP CK+H +ASK+L LWRLP +L++ LKRFS+ F +
Sbjct: 1059 TLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSFRSFIWR 1118
Query: 793 NKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQ-- 850
+K+ V+FPV NLDLS ++ Y LYAV NHYG M GGHYTA +
Sbjct: 1119 DKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSS 1178
Query: 851 ------WYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
W FDDS V + + ++ T AYVLFYRR
Sbjct: 1179 QRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1213
>sp|Q3UJD6|UBP19_MOUSE Ubiquitin carboxyl-terminal hydrolase 19 OS=Mus musculus GN=Usp19
PE=2 SV=1
Length = 1360
Score = 238 bits (608), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/303 (43%), Positives = 180/303 (59%), Gaps = 6/303 (1%)
Query: 280 CL-GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFR-EINHDNPLGMDGEIALAFG 337
CL G TGL NLGNTCFMNS +Q L +T +L D+F F EIN++NPLG G +A+ F
Sbjct: 534 CLPGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFA 593
Query: 338 DLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKP 397
LLR LW P K+ +A A QF+G+ QHD+QE +AFLLDGLHEDLNR++ KP
Sbjct: 594 VLLRALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKP 653
Query: 398 YAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMY 457
Y E D DGR DE +A+E WQ H RNDS IVDL QGQYKS LVCPVC KVS+TFDPF+Y
Sbjct: 654 YTETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLY 713
Query: 458 LSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKY-GKFEDLIRALSIACALGVNETLL 516
L +PLP +++ + + +KP F ++V K +++ +LS + + E L
Sbjct: 714 LPVPLPQKQ-KVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLR 771
Query: 517 VAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKL 576
+AE+ ++ R P+ S+ + D L+ + L VV + Q Q +
Sbjct: 772 LAEVIKNRFHRVF-LPSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQVPSIPI 830
Query: 577 TSC 579
+ C
Sbjct: 831 SKC 833
Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 93/155 (60%), Gaps = 9/155 (5%)
Query: 734 SLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFS-K 792
+L +CL F E L PE+ WYCP CK+H +ASK+L LWRLP +L++ LKRFS+ F +
Sbjct: 1101 TLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKRFSFRSFIWR 1160
Query: 793 NKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQ-- 850
+K+ V+FPV NLDLS ++ Y LYAV NHYG M GGHYTA +
Sbjct: 1161 DKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINHYGGMIGGHYTACARLPNDRSS 1220
Query: 851 ------WYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
W FDDS V + + ++ T AYVLFYRR
Sbjct: 1221 QRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRR 1255
>sp|P39538|UBP12_YEAST Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP12 PE=1
SV=1
Length = 1254
Score = 219 bits (559), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 178/319 (55%), Gaps = 23/319 (7%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLL 340
G TGL NLGNTC+MNSALQCLVH P+L DYFL D Y EIN +NPLG G +A AF DL+
Sbjct: 362 GTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAFSDLV 421
Query: 341 RKLWA------PGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVK 394
+KL+ A P FKS + F FSG+ Q DSQE LAFLLD LHEDLNR+
Sbjct: 422 QKLFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRII 481
Query: 395 CKPYAEAKD---GDGRSD----EDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKK 447
K Y E GD +D + +AD+ W+ HL RN S+I DL G YKSTL CP C+
Sbjct: 482 KKEYTEKPSLSPGDDVNDWNVVKKLADDTWEMHLKRNCSVITDLFVGMYKSTLYCPECQN 541
Query: 448 VSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIAC 507
VS+TFDP+ ++LPLP TV T+ + + + P + + K + DL +
Sbjct: 542 VSITFDPYNDVTLPLPVDTVWDKTIKIFPMN--SPPLLLEVELSKSSTYMDLKNYVGKMS 599
Query: 508 ALGVNETLLVAEIYNHQIIRYLEEPADSIS------LIRDDDQLVAYRLRKENDKDPLVV 561
L N TL EI+++QI E + LI+ D ++ Y L ND + +V
Sbjct: 600 GLDPN-TLFGCEIFSNQIYVNYESTESNAQFLTLQELIKPADDVIFYELPVTNDNEVIVP 658
Query: 562 FMHQQLEEQYIHGKLTSCP 580
++ ++E+ Y + L P
Sbjct: 659 VLNTRIEKGYKNAMLFGVP 677
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Query: 730 QESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSR 789
+ +++L CL+ F E LG D WYCP CK+H QA+K++ LW P+IL+IHLKRF R
Sbjct: 959 ERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQR 1018
Query: 790 FSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHH-GG 848
+K++ V+FP+ +LDLS +V + +D Y LYAV NHYG +GGGHYTA+V +
Sbjct: 1019 SFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNFAD 1078
Query: 849 GQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
+WY FDDS V + + +AY+LFY R
Sbjct: 1079 NKWYYFDDSRVTETAPENSIAGSAYLLFYIR 1109
>sp|Q9USM5|UBP1_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp1 PE=3 SV=1
Length = 849
Score = 219 bits (558), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 158/477 (33%), Positives = 240/477 (50%), Gaps = 55/477 (11%)
Query: 109 DYALVPGEMWLQALKWHSDTKVAAKNRKSFL----ASEDDMADVYPLQLRLSVMRE---- 160
DY++V +W ++W +A + RK L A + D+YP+ L V+ +
Sbjct: 92 DYSIVSASLWHMLVEWFGLEGLAIE-RKVLLVGLAAEQKPFVDIYPINFTLHVLFDPING 150
Query: 161 ---TNSLGVKISKKDNAVE----LFKRACKIFSIESELLHIWDFSGQTT--LYFLNDKNK 211
+ S +I + ++ E F R+ + S+ +++ + S T+ L++LN N
Sbjct: 151 ENTSYSPLYQIDEPYHSDEPYAFSFSRSDTLRSLYKQVMEAFQISDGTSFRLWYLNKSNL 210
Query: 212 FSKDCLRLSDHEILLELQIYGLSDSLKCREGRKDEMA-------VQHSNGSLTNGSFGIV 264
S+ +S E + I LS+ C + ++A QH NG + S I
Sbjct: 211 SSR---FVSLSEFNDQPAIALLSEYAVCMTIFEIDIADGSLLLEFQHPNGEWLSDS--IT 265
Query: 265 RNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHD 323
+ ++T + +GL GL NLGN+C+MNSALQC++HT +L YFL D Y ++IN++
Sbjct: 266 KEQNLTINKE------IGLCGLYNLGNSCYMNSALQCMIHTHELTKYFLSDSYEKDINYN 319
Query: 324 NPLGMDGEIALAFGDLLRKLW-APGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFL 382
NPLGM G++AL++ LL+ + VSP +FK + F FSG+ Q DSQE +AF
Sbjct: 320 NPLGMMGKVALSYASLLKMIHHTADMHSVSPSSFKFIIGEFNTYFSGYRQQDSQEFIAFF 379
Query: 383 LDGLHEDLNRVKCKPYAEAKDGDGRSD---EDIADEYWQNHLARNDSIIVDLCQGQYKST 439
LDGLHEDLNR++ KPY E D + +A++ W H RNDSIIV L QG YKST
Sbjct: 380 LDGLHEDLNRIQIKPYFERPDLFDEHPLHVQRVANQCWDIHTKRNDSIIVQLFQGMYKST 439
Query: 440 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPF--------TITVP 491
L C +C + S FDPFMYL+LPLP++ + V GT P T+
Sbjct: 440 LECSICYQKSTAFDPFMYLTLPLPTSAKWRHKVVYVPPFGTQSPVELYLELLMESTVIQM 499
Query: 492 KYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAY 548
K+ E L + + + C L +IY ++ + L+ I D +V Y
Sbjct: 500 KFQATEKL-QKMGLECG-----ELTACDIYRGKVYKVLKNKDKISKKIHKWDHVVLY 550
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 92/159 (57%), Gaps = 11/159 (6%)
Query: 731 ESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF 790
ES++L CL F E L +D WYCPGCK A+K+L++WRLP+ILVIHL RFS
Sbjct: 688 ESITLEDCLLEFSKPEQLDLQDSWYCPGCKAFRPATKRLEIWRLPKILVIHLNRFSGHGG 747
Query: 791 SKNKLETYVD---FPVDNLDLSTHVA-------HLNDKLSNRYMLYAVSNHYGSMGGGHY 840
+ D +PV +L+L ++ L+ + S Y LYAV NH+G M GHY
Sbjct: 748 DLRRRRKRRDLVVYPVFDLNLKQFLSPFIKDHEWLSSQKSMLYDLYAVDNHHGFMSNGHY 807
Query: 841 TAFVHHGGGQ-WYDFDDSHVYPISQDKIKTSAAYVLFYR 878
TA+ Q ++ FDD+ + I + I TS+AYVLFYR
Sbjct: 808 TAYARDASSQTFFKFDDTAICEIDPEDIVTSSAYVLFYR 846
>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8
PE=1 SV=1
Length = 1118
Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 134/217 (61%), Gaps = 6/217 (2%)
Query: 251 HSNGSLTNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVD 310
+ ++ S +RN + F G SG A LTGL+NLGNTC+MNS LQCL + P L D
Sbjct: 749 YPKAEISRLSASQIRNLNPVFGG-SGPA----LTGLRNLGNTCYMNSILQCLCNAPHLAD 803
Query: 311 YFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSG 369
YF + Y +IN N LG GE+A FG +++ LW +SP+ FK + + QF+G
Sbjct: 804 YFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAG 863
Query: 370 FNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIV 429
++Q DSQELL FL+DGLHEDLN+ + + ++ D D A+ WQ H N+SIIV
Sbjct: 864 YSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIV 923
Query: 430 DLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTT 466
L QGQ+KST+ C C K S TF+ FMYLSLPL ST+
Sbjct: 924 ALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS 960
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 6/172 (3%)
Query: 718 EIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEI 777
E F LP +L CL F EE L + +YC C+ + KK+++W+LP +
Sbjct: 947 EAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPV 1006
Query: 778 LVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGG 837
L++HLKRFSY K KL+T VDFP++NLDLS +V + L +Y L++VSNHYG + G
Sbjct: 1007 LLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNL-KKYNLFSVSNHYGGLDG 1065
Query: 838 GHYTAFVHHGGGQ-WYDFDDSHVYPISQDKIKTSAAYVLFYR----RVVEVS 884
GHYTA+ + Q W+ FDD V IS +K+SAAY+LFY RV +V+
Sbjct: 1066 GHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLGPRVTDVA 1117
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8
PE=1 SV=2
Length = 1080
Score = 187 bits (474), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 134/217 (61%), Gaps = 6/217 (2%)
Query: 251 HSNGSLTNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVD 310
+ ++ S +RN + F G SG A LTGL+NLGNTC+MNS LQCL + P L D
Sbjct: 711 YPKAEISRLSASQIRNLNPVFGG-SGPA----LTGLRNLGNTCYMNSILQCLCNAPHLAD 765
Query: 311 YFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSG 369
YF + Y +IN N LG GE+A FG +++ LW +SP+ FK + + QF+G
Sbjct: 766 YFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKVTIGKINDQFAG 825
Query: 370 FNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIV 429
+Q DSQELL FL+DGLHEDLN+ + + ++ + D A+ WQ H N+SIIV
Sbjct: 826 SSQQDSQELLLFLMDGLHEDLNKADNRKRHKEENNEHLDDLQAAEHAWQKHKQLNESIIV 885
Query: 430 DLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTT 466
L QGQ+KST+ C C++ S TF+ FMYLSLPL ST+
Sbjct: 886 ALFQGQFKSTVQCLTCRRRSRTFEAFMYLSLPLASTS 922
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 99/161 (61%), Gaps = 2/161 (1%)
Query: 718 EIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEI 777
E F LP +L CL F EE L + +YC C+ + KK+++W+LP +
Sbjct: 909 EAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPV 968
Query: 778 LVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGG 837
L++HLKRFSY K KL+T VDFP++NLDLS +V + L +Y L++VSNHYG + G
Sbjct: 969 LLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNSL-KKYNLFSVSNHYGGLDG 1027
Query: 838 GHYTAFVHHGGGQ-WYDFDDSHVYPISQDKIKTSAAYVLFY 877
GHYTA+ + Q W+ FDD V IS +++SAAY+LFY
Sbjct: 1028 GHYTAYCKNAARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1068
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2
PE=2 SV=1
Length = 357
Score = 166 bits (420), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 120/193 (62%), Gaps = 4/193 (2%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLL 340
GLTGL+NLGNTCFMNS LQCL +T +L DY L + Y R++N+++ M + F L+
Sbjct: 17 GLTGLRNLGNTCFMNSILQCLSNTKELRDYCLQNQYLRDLNNNS--RMRTALMSEFAKLI 74
Query: 341 RKLWAPGAA-PVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYA 399
+ LW VSP FK+++ R+AP+F G+NQ D+QE L FLLDGLH ++NRV +P A
Sbjct: 75 QLLWTSSPNDSVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHGEVNRVLVRPRA 134
Query: 400 EAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLS 459
A D D++ + + W+ + R DS + DL GQ KS+L C C S FDPF LS
Sbjct: 135 NADTLDHLPDDEKSRQMWRRYQEREDSRVSDLFVGQLKSSLTCSECGYCSTAFDPFWDLS 194
Query: 460 LPLPSTTVRMMTL 472
LP+P +TL
Sbjct: 195 LPIPKKGYGEVTL 207
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 92/154 (59%), Gaps = 3/154 (1%)
Query: 725 LPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKR 784
+PK+ V+L CL F E+ L ++ C CK + +KK + + P+ILV+HLKR
Sbjct: 197 IPKKGYGEVTLMDCLRLFTKEDVLDGDEKPTCCRCKARTRCTKKFSIQKFPKILVLHLKR 256
Query: 785 FSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFV 844
FS +R +KL T+V+FP+ +LDL + + Y LYAVSNH G+ GGHYTA+
Sbjct: 257 FSEARIRASKLTTFVNFPLKDLDLREFASQSCNHAV--YNLYAVSNHSGTTMGGHYTAYC 314
Query: 845 HHG-GGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877
+W+ F+DS V P+S +++S AY+LFY
Sbjct: 315 KSPISSEWHSFNDSRVTPMSSSHVRSSDAYLLFY 348
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2
PE=1 SV=2
Length = 605
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 138/240 (57%), Gaps = 27/240 (11%)
Query: 262 GIVRNSSITFSGRSG--EAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFR 318
G R+SS GR G GL GL+NLGNTCFMNS LQCL +T +L DY L Y R
Sbjct: 246 GPSRSSS---PGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMR 302
Query: 319 EINHDNPLGMDGEIALA--FGDLLRKLWAPGAAP---VSPRTFKSKLARFAPQFSGFNQH 373
+++H G + AL F L++ +W ++P VSP FK+++ R+AP+F G+NQ
Sbjct: 303 DLHH----GSNAHTALVEEFAKLIQTIWT--SSPNDVVSPSEFKTQIQRYAPRFVGYNQQ 356
Query: 374 DSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQ 433
D+QE L FLLDGLH ++NRV +P + ++ D D++ + W+ +L R DS I DL
Sbjct: 357 DAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFV 416
Query: 434 GQYKSTLVCPVCKKVSVTFDPFMYLSLPL-----PSTT----VRMMTLTVVNTDGTAKPS 484
GQ KS+L C C S FDPF LSLP+ P T +R+ T V DG KP+
Sbjct: 417 GQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDV-LDGDEKPT 475
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 3/154 (1%)
Query: 725 LPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKR 784
+ KR V+L C+ F E+ L ++ C C+ + KK + R P+ILV+HLKR
Sbjct: 445 IAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKR 504
Query: 785 FSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFV 844
FS SR +KL T+V+FP+ +LDL + + Y LYAVSNH G+ GGHYTA+
Sbjct: 505 FSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV--YNLYAVSNHSGTTMGGHYTAYC 562
Query: 845 HH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877
G G+W+ F+DS V P+S +++TS AY+LFY
Sbjct: 563 RSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 596
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2
PE=1 SV=2
Length = 613
Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLL 340
GL GL+NLGNTCFMNS LQCL +T +L DY L Y R++ H + + F L+
Sbjct: 273 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTS--SAHTALMEEFAKLI 330
Query: 341 RKLWAPGAAP---VSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKP 397
+ +W ++P VSP FK+++ R+AP+F G+NQ D+QE L FLLDGLH ++NRV +P
Sbjct: 331 QTIWT--SSPNDVVSPSEFKTQIQRYAPRFMGYNQQDAQEFLRFLLDGLHNEVNRVAARP 388
Query: 398 YAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMY 457
A + D DE+ + W+ +L R DS I DL GQ KS+L C C S FDPF
Sbjct: 389 KASPETLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWD 448
Query: 458 LSLPL 462
LSLP+
Sbjct: 449 LSLPI 453
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 92/154 (59%), Gaps = 3/154 (1%)
Query: 725 LPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKR 784
+ KR V+L C+ F E+ L ++ C C+ + KK + R P+ILV+HLKR
Sbjct: 453 IAKRGYPEVTLMDCMRLFTKEDILDGDEKPTCCRCRARKRCIKKFSVQRFPKILVLHLKR 512
Query: 785 FSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFV 844
FS SR +KL T+V+FP+ +LDL + + Y LYAVSNH G+ GGHYTA+
Sbjct: 513 FSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV--YNLYAVSNHSGTTMGGHYTAYC 570
Query: 845 HHG-GGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877
G+W+ F+DS V P+S +++TS AY+LFY
Sbjct: 571 RSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 604
>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus
GN=Usp2 PE=1 SV=1
Length = 618
Score = 160 bits (404), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLL 340
GL GL+NLGNTCFMNS LQCL +T +L DY L Y R++ H + + F L+
Sbjct: 278 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTS--SAHTALMEEFAKLI 335
Query: 341 RKLWAPGAAP---VSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKP 397
+ +W ++P VSP FK+++ R+AP+F G+NQ D+QE L FLLDGLH ++NRV +P
Sbjct: 336 QTIWT--SSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVAARP 393
Query: 398 YAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMY 457
+ D DE+ + W+ +L R DS I DL GQ KS+L C C S FDPF
Sbjct: 394 KPSPESLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWD 453
Query: 458 LSLPL 462
LSLP+
Sbjct: 454 LSLPI 458
Score = 113 bits (282), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 112/216 (51%), Gaps = 25/216 (11%)
Query: 684 PIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGF------------------- 724
P ++ +P+E W K +E+ D+R+ F KS
Sbjct: 397 PESLDHLPDEEKGRQMWR-KYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 455
Query: 725 LP--KRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHL 782
LP KR V+L C+ F E+ L ++ C C+ + KK + R P+ILV+HL
Sbjct: 456 LPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRCIKKFSVQRFPKILVLHL 515
Query: 783 KRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTA 842
KRFS SR +KL T+V+FP+ +LDL + + Y LYAVSNH G+ GGHYTA
Sbjct: 516 KRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV--YNLYAVSNHSGTTMGGHYTA 573
Query: 843 FVHHG-GGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877
+ G+W+ F+DS V P+S +++TS AY+LFY
Sbjct: 574 YCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 609
>sp|Q2KHV7|UBP2_BOVIN Ubiquitin carboxyl-terminal hydrolase 2 OS=Bos taurus GN=USP2 PE=2
SV=1
Length = 606
Score = 159 bits (403), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 117/187 (62%), Gaps = 12/187 (6%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALA--FGD 338
GL GL+NLGNTCFMNS LQCL +T +L DY L Y R+++H + AL F
Sbjct: 266 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYLRDLSHSS----RAHTALMEEFAK 321
Query: 339 LLRKLWAPGAAP---VSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKC 395
L++ +W ++P VSP FK+++ R+AP+F G+NQ D+QE L FLLDGLH ++NRV
Sbjct: 322 LIQTIWT--SSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVIA 379
Query: 396 KPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPF 455
+P + ++ D D++ + W+ +L R DS I DL GQ KS+L C C S FDPF
Sbjct: 380 RPKSNTENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 439
Query: 456 MYLSLPL 462
LSLP+
Sbjct: 440 WDLSLPI 446
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 90/152 (59%), Gaps = 3/152 (1%)
Query: 727 KRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFS 786
KR V+L C+ F E+ L ++ C C+ + KK + R P+ILV+HLKRFS
Sbjct: 448 KRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRCIKKFSIQRFPKILVLHLKRFS 507
Query: 787 YSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHH 846
SR +KL +V+FP+ +LDL + + Y LYAVSNH G+ GGHYTA+
Sbjct: 508 ESRIRTSKLTAFVNFPLRDLDLREFASENTNHAV--YNLYAVSNHSGTTMGGHYTAYCRS 565
Query: 847 G-GGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877
G+W+ F+DS V P+S +++TS AY+LFY
Sbjct: 566 PVTGEWHTFNDSSVSPMSSSQVRTSDAYLLFY 597
>sp|Q01988|UBP11_CANFA Ubiquitin carboxyl-terminal hydrolase 11 (Fragment) OS=Canis
familiaris GN=USP11 PE=2 SV=1
Length = 445
Score = 154 bits (388), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 105/151 (69%), Gaps = 4/151 (2%)
Query: 733 VSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSK 792
V L +C+E F T E L E+ W+CP CK+H A+KKLDLW LPE L+IHLKRFSY++FS+
Sbjct: 261 VRLQECIELFTTVETLEKENPWFCPTCKQHQLATKKLDLWMLPETLIIHLKRFSYTKFSR 320
Query: 793 NKLETYVDFPVDNLDLSTHVAHLNDKLSN---RYMLYAVSNHYGSMGGGHYTAFV-HHGG 848
KL+T V+FP+ +LD S V ++ + +Y L AVSNHYG + GHYT F +
Sbjct: 321 EKLDTLVEFPIRDLDFSEFVIKPQNESAPELYKYDLIAVSNHYGGLRDGHYTTFACNKDS 380
Query: 849 GQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
GQ FDD+ V P+++++I++ AAYVLFY+R
Sbjct: 381 GQSDYFDDNSVSPVTENQIESKAAYVLFYQR 411
>sp|Q70CQ4|UBP31_HUMAN Ubiquitin carboxyl-terminal hydrolase 31 OS=Homo sapiens GN=USP31
PE=2 SV=2
Length = 1352
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 96/175 (54%), Gaps = 22/175 (12%)
Query: 731 ESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF 790
++ +L +C + + EE L P+D W CP CK+ Q S L LW LP++L+IHLKRF
Sbjct: 594 QTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVLIIHLKRFRQEGD 653
Query: 791 SKNKLETYVDFPVDNLDLSTHVAHLN---------------------DKLSNRYMLYAVS 829
+ KL+ V FP+ LD++ HV + D Y LYAV
Sbjct: 654 RRMKLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRDPEDYIYDLYAVC 713
Query: 830 NHYGSMGGGHYTAFVHHG-GGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVEV 883
NH+G+M GGHYTA+ + G WY FDDS V +S+D++ T AY+LFY+R +
Sbjct: 714 NHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILFYQRRTAI 768
Score = 132 bits (333), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 139/278 (50%), Gaps = 18/278 (6%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYF-LGDYFR-----EINHDNPLGM----DGE 331
G+ GL+N GNTCFMN+ LQCL +T +Y LG Y + + P G GE
Sbjct: 126 GVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDPEQPAGRGAQGQGE 185
Query: 332 IALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLN 391
+ L+R LW P R FK+ +++ A Q+ G +QHD+QE L +LLD +HEDLN
Sbjct: 186 VTEQLAHLVRALWTLEYTPQHSRDFKTIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLN 245
Query: 392 R-VKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSV 450
VK K S+ D+ E + + + +L Q QY+S+L CP C+K S
Sbjct: 246 HSVKQSGQPPLKPP---SETDMMPEGPSFPVC--STFVQELFQAQYRSSLTCPHCQKQSN 300
Query: 451 TFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALG 510
TFDPF+ +SLP+P R + +TVV + + VP G L A+S+ +
Sbjct: 301 TFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMETKIP 360
Query: 511 VNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAY 548
++ +L E+Y R + D + + + D + A+
Sbjct: 361 TDQIVLT-EMYYDGFHRSFCD-TDDLETVHESDCIFAF 396
>sp|Q8BUM9|UBP43_MOUSE Ubiquitin carboxyl-terminal hydrolase 43 OS=Mus musculus GN=Usp43
PE=2 SV=2
Length = 1132
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 97/173 (56%), Gaps = 23/173 (13%)
Query: 730 QESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSR 789
Q S +L +C +++ EE L +D W CP C+ Q KL LW LP+IL+IHLKRF
Sbjct: 537 QPSCTLDECFQSYTKEEQLAQDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVG 596
Query: 790 FSKNKLETYVDFPVDNLDLSTHVAH--LNDK--------------------LSNRYMLYA 827
+NKL T V FP+ L+++ HVA N K L Y LYA
Sbjct: 597 ERRNKLSTLVKFPLSGLNMAPHVARRSTNSKAGPGPWSSWKQPICLPTTYPLDFLYDLYA 656
Query: 828 VSNHYGSMGGGHYTAFVHHG-GGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
V NH+GS+ GGHYTA+ + GQWY +DDS V + +D++ T AY+LFY++
Sbjct: 657 VCNHHGSLQGGHYTAYCRNSLDGQWYSYDDSTVEALREDEVNTRGAYILFYQK 709
Score = 117 bits (292), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 131/271 (48%), Gaps = 13/271 (4%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYF-LGDYFREINHDNPLGMDGEIALAFGDLL 340
G GL+N GNTCFMN+ +QCL +T L ++ LG Y E+ L+
Sbjct: 99 GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGR-------AEVTEQLAALV 151
Query: 341 RKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAE 400
R LW P FK+ ++++ QF G +QHD+ E L +LLD +HEDL +E
Sbjct: 152 RALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSAHGLVSE 211
Query: 401 AKDGD-GRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLS 459
+ + ED+ L S + Q QY+S+L CP C K S TFDPF+ +S
Sbjct: 212 QLPPEVSKISEDLRPSAAPTSLG--PSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVS 269
Query: 460 LPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 519
LP+P R +++T+V + + + VP L + ++ + E +LV E
Sbjct: 270 LPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTVAALRKMVAEEGGVPAEEVILV-E 328
Query: 520 IYNHQIIRYLEEPADSISLIRDDDQLVAYRL 550
+Y + R + D ++ I + D + A+++
Sbjct: 329 LYPNGFQRSFFDEED-LNTIAEGDNVYAFQV 358
>sp|Q70EL4|UBP43_HUMAN Ubiquitin carboxyl-terminal hydrolase 43 OS=Homo sapiens GN=USP43
PE=1 SV=2
Length = 1123
Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 96/171 (56%), Gaps = 23/171 (13%)
Query: 732 SVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFS 791
S +L +C + + EE L +D W CP C+ Q KL LW LP+IL+IHLKRF
Sbjct: 539 SCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGER 598
Query: 792 KNKLETYVDFPVDNLDLSTHVAHLN----------------DKLSNRYM------LYAVS 829
+NKL T V FP+ L+++ HVA + D L Y LYAV
Sbjct: 599 RNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYPLDFLYDLYAVC 658
Query: 830 NHYGSMGGGHYTAFVHHG-GGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
NH+G++ GGHYTA+ + GQWY +DDS V P+ +D++ T AY+LFY++
Sbjct: 659 NHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQK 709
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 133/271 (49%), Gaps = 13/271 (4%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYF-LGDYFREINHDNPLGMDGEIALAFGDLL 340
G GL+N GNTCFMN+ +QCL +T L ++ LG Y E+ L+
Sbjct: 99 GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGR-------AEVTEQLAALV 151
Query: 341 RKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAE 400
R LW P FK+ ++++ QF G +QHD+ E L +LLD +HEDL P +E
Sbjct: 152 RALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSE 211
Query: 401 AKDGDG-RSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLS 459
+ ++ E+ Q L S + Q QY+S+L CP C K S TFDPF+ +S
Sbjct: 212 KLPPEATKTSENCLSPSAQ--LPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVS 269
Query: 460 LPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 519
LP+P R +++T+V + + + VP L + ++ + +E +LV E
Sbjct: 270 LPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTVAALRKMVAEEGGVPADEVILV-E 328
Query: 520 IYNHQIIRYLEEPADSISLIRDDDQLVAYRL 550
+Y R + D ++ I + D + A+++
Sbjct: 329 LYPSGFQRSFFDEED-LNTIAEGDNVYAFQV 358
>sp|B3LGK1|UBP4_YEAS1 Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=DOA4 PE=3 SV=1
Length = 926
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 105/196 (53%), Gaps = 12/196 (6%)
Query: 285 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKL 343
GL+NLGN+C+MN +QC++ T +L FL D Y + IN ++ LG G +A F L+ +
Sbjct: 563 GLENLGNSCYMNCIIQCILGTHELTQIFLDDSYAKHININSKLGSKGILAKYFARLVHMM 622
Query: 344 W-----APGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPY 398
+ P+SP FK F +Q D QE FLLDGLHEDLN+ P
Sbjct: 623 YKEQVDGSKKIPISPIKFKLACGSVNSLFKTASQQDCQEFCQFLLDGLHEDLNQCGSNPP 682
Query: 399 AE--AKDGDGRSDE---DIADEY-WQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTF 452
+ +++ + R ++ IA W+ L + S+IVDL QGQY S L C VC S T+
Sbjct: 683 LKELSQEAEARREKLSLRIASSIEWERFLTTDFSVIVDLFQGQYASRLKCKVCSHTSTTY 742
Query: 453 DPFMYLSLPLPSTTVR 468
PF LS+P+P R
Sbjct: 743 QPFTVLSIPIPKKNSR 758
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 94/180 (52%), Gaps = 26/180 (14%)
Query: 725 LPKR-PQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLK 783
+PK+ + ++++ C F E L ++ W CP C+K ++K+L + RLP L++HLK
Sbjct: 752 IPKKNSRNNITIEDCFREFTKCENLEVDEQWLCPHCEKRQPSTKQLTITRLPRNLIVHLK 811
Query: 784 RFSYSRFSKNKLETYVDFPVDNLDLSTHVAH----------LNDKLSNR-------YMLY 826
RF NK +V +P LDL+ A+ +D+L R Y LY
Sbjct: 812 RFDNLL---NKNNDFVIYPFL-LDLTPFWANDFDGVFPPGVNDDELPIRGQIPPFKYELY 867
Query: 827 AVSNHYGSMGGGHYTAFVHHGGGQ-WYDFDDSHVYPISQ--DKIKTSAAYVLFYRRVVEV 883
V+ H+G++ GGHYTA+V G + W FDD+ P+ D I S AYVLFY RV V
Sbjct: 868 GVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADAI-NSNAYVLFYHRVYGV 926
>sp|Q9QZL6|UBP21_MOUSE Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21
PE=1 SV=1
Length = 566
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 108/199 (54%), Gaps = 19/199 (9%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLR 341
G GL+NLGNTCF+N+ LQCL T L D+ L FR+ G E+ AF D++
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG--GRAQELTEAFADVIG 267
Query: 342 KLWAPGAA-PVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRV--KCKPY 398
LW P + V+P F++ ++ P FSG++Q D+QE L L++ LH ++NR + P
Sbjct: 268 ALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPI 327
Query: 399 -------AEAKDGDGR-------SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPV 444
+ + G G SD+D A+ W+ +L R DS IVDL GQ KS L C
Sbjct: 328 LASGPVPSPPRRGGGALHEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQA 387
Query: 445 CKKVSVTFDPFMYLSLPLP 463
C S TF+ F LSLP+P
Sbjct: 388 CGYRSTTFEVFCDLSLPIP 406
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 733 VSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSK 792
VSL C F EE L E+ C C++ +++KKL + R P ILV+HL RFS SR S
Sbjct: 415 VSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSI 474
Query: 793 NKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQWY 852
K VDFP+ L L + + S Y LYA+ NH GS+ GHYTA G W+
Sbjct: 475 KKSSVGVDFPLQRLSLGDFAS--DKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTG-WH 531
Query: 853 DFDDSHVYPISQDKIKTSAAYVLFYRRVVE 882
++DS V P+S++++ +S YVLFY+ + E
Sbjct: 532 VYNDSRVSPVSENQVASSEGYVLFYQLMQE 561
>sp|P32571|UBP4_YEAST Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DOA4 PE=1 SV=2
Length = 926
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 104/196 (53%), Gaps = 12/196 (6%)
Query: 285 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKL 343
GL+NLGN+C+MN +QC++ T +L FL D Y + IN ++ LG G +A F L+ +
Sbjct: 563 GLENLGNSCYMNCIIQCILGTHELTQIFLDDSYAKHININSKLGSKGILAKYFARLVHMM 622
Query: 344 W-----APGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPY 398
+ +SP FK F +Q D QE FLLDGLHEDLN+ P
Sbjct: 623 YKEQVDGSKKISISPIKFKLACGSVNSLFKTASQQDCQEFCQFLLDGLHEDLNQCGSNPP 682
Query: 399 AE--AKDGDGRSDE---DIADEY-WQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTF 452
+ +++ + R ++ IA W+ L + S+IVDL QGQY S L C VC S T+
Sbjct: 683 LKELSQEAEARREKLSLRIASSIEWERFLTTDFSVIVDLFQGQYASRLKCKVCSHTSTTY 742
Query: 453 DPFMYLSLPLPSTTVR 468
PF LS+P+P R
Sbjct: 743 QPFTVLSIPIPKKNSR 758
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 94/180 (52%), Gaps = 26/180 (14%)
Query: 725 LPKR-PQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLK 783
+PK+ + ++++ C F E L ++ W CP C+K ++K+L + RLP L++HLK
Sbjct: 752 IPKKNSRNNITIEDCFREFTKCENLEVDEQWLCPHCEKRQPSTKQLTITRLPRNLIVHLK 811
Query: 784 RFSYSRFSKNKLETYVDFPVDNLDLSTHVAH----------LNDKLSNR-------YMLY 826
RF NK +V +P LDL+ A+ +D+L R Y LY
Sbjct: 812 RFDNLL---NKNNDFVIYPFL-LDLTPFWANDFDGVFPPGVNDDELPIRGQIPPFKYELY 867
Query: 827 AVSNHYGSMGGGHYTAFVHHGGGQ-WYDFDDSHVYPISQ--DKIKTSAAYVLFYRRVVEV 883
V+ H+G++ GGHYTA+V G + W FDD+ P+ D I S AYVLFY RV V
Sbjct: 868 GVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADAI-NSNAYVLFYHRVYGV 926
>sp|A6ZY34|UBP4_YEAS7 Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain YJM789) GN=DOA4 PE=3 SV=1
Length = 926
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 104/196 (53%), Gaps = 12/196 (6%)
Query: 285 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKL 343
GL+NLGN+C+MN +QC++ T +L FL D Y + IN ++ LG G +A F L+ +
Sbjct: 563 GLENLGNSCYMNCIIQCILGTHELTQIFLDDSYAKHININSKLGSKGILAKYFARLVHMM 622
Query: 344 W-----APGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPY 398
+ +SP FK F +Q D QE FLLDGLHEDLN+ P
Sbjct: 623 YKEQVDGSKKISISPIKFKLACGSVNSLFKTASQQDCQEFCQFLLDGLHEDLNQCGSNPP 682
Query: 399 AE--AKDGDGRSDE---DIADEY-WQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTF 452
+ +++ + R ++ IA W+ L + S+IVDL QGQY S L C VC S T+
Sbjct: 683 LKELSQEAEARREKLSLRIASSIEWERFLTTDFSVIVDLFQGQYASRLKCKVCSHTSTTY 742
Query: 453 DPFMYLSLPLPSTTVR 468
PF LS+P+P R
Sbjct: 743 QPFTVLSIPIPKKNSR 758
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 94/180 (52%), Gaps = 26/180 (14%)
Query: 725 LPKR-PQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLK 783
+PK+ + ++++ C F E L ++ W CP CKK ++K+L + RLP L++HLK
Sbjct: 752 IPKKNSRNNITIEDCFREFTKCENLEVDEQWLCPHCKKRQPSTKQLTITRLPRNLIVHLK 811
Query: 784 RFSYSRFSKNKLETYVDFPVDNLDLSTHVAH----------LNDKLSNR-------YMLY 826
RF NK +V +P LDL+ A+ +D+L R Y LY
Sbjct: 812 RFDNLL---NKNNDFVIYPFL-LDLTPFWANDFDGVFPPGVNDDELPIRGQIPPFKYELY 867
Query: 827 AVSNHYGSMGGGHYTAFVHHGGGQ-WYDFDDSHVYPISQ--DKIKTSAAYVLFYRRVVEV 883
V+ H+G++ GGHYTA+V G + W FDD+ P+ D I S AYVLFY RV V
Sbjct: 868 GVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADAI-NSNAYVLFYHRVYGV 926
>sp|B2GUX4|UBP21_RAT Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus
GN=Usp21 PE=2 SV=1
Length = 565
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 105/198 (53%), Gaps = 18/198 (9%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLR 341
G GL+NLGNTCF+N+ LQCL T L D+ L FR+ G E+ AF D++
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG--GRAQELTEAFADVIG 267
Query: 342 KLWAPGAA-PVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNR-------- 392
LW P + V+P F++ ++ P FSG++Q D+QE L L++ LH ++NR
Sbjct: 268 ALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPI 327
Query: 393 VKCKPYAEAKDGDGR-------SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVC 445
+ P G SD+D A+ W+ +L R DS IVDL GQ KS L C C
Sbjct: 328 LASGPVPSPPRRGGALHEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQAC 387
Query: 446 KKVSVTFDPFMYLSLPLP 463
S TF+ F LSLP+P
Sbjct: 388 GYRSTTFEVFCDLSLPIP 405
Score = 113 bits (282), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 88/151 (58%), Gaps = 5/151 (3%)
Query: 733 VSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSK 792
VSL C F EE L E+ C C++ +++KKL + R P ILV+HL RFS SR S
Sbjct: 414 VSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSI 473
Query: 793 NKLETYVDFPVDNLDLSTHVAHLNDKL-SNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQW 851
K VDFP+ L L + DK+ S Y LYA+ NH GS+ GHYTA G W
Sbjct: 474 KKSSVGVDFPLQRLSLGDFAS---DKVGSPVYQLYALCNHSGSVHYGHYTALCRCQTG-W 529
Query: 852 YDFDDSHVYPISQDKIKTSAAYVLFYRRVVE 882
+ ++DS V P+S++++ +S YVLFY+ + E
Sbjct: 530 HVYNDSRVSPVSENQVASSEGYVLFYQLMQE 560
>sp|Q9UK80|UBP21_HUMAN Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21
PE=1 SV=1
Length = 565
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 106/198 (53%), Gaps = 18/198 (9%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLR 341
G GL+NLGNTCF+N+ LQCL T L D+ L FR+ G E+ AF D++
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG--GRAQELTEAFADVIG 267
Query: 342 KLWAPGAA-PVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCK---- 396
LW P + V+P F++ ++ P FSG++Q D+QE L L++ LH ++NR +
Sbjct: 268 ALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPI 327
Query: 397 ------PYAEAKDG-----DGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVC 445
P + G SD+D A+ W+ +L R DS IVDL GQ KS L C C
Sbjct: 328 LANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQAC 387
Query: 446 KKVSVTFDPFMYLSLPLP 463
S TF+ F LSLP+P
Sbjct: 388 GYRSTTFEVFCDLSLPIP 405
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 733 VSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSK 792
VSL C F EE L E+ C C++ +++KKL + R P ILV+HL RFS SR S
Sbjct: 414 VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSI 473
Query: 793 NKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQWY 852
K VDFP+ L L + + S Y LYA+ NH GS+ GHYTA G W+
Sbjct: 474 KKSSVGVDFPLQRLSLGDFAS--DKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTG-WH 530
Query: 853 DFDDSHVYPISQDKIKTSAAYVLFYRRVVE 882
++DS V P+S++++ +S YVLFY+ + E
Sbjct: 531 VYNDSRVSPVSENQVASSEGYVLFYQLMQE 560
>sp|Q2KJ72|UBP21_BOVIN Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21
PE=2 SV=1
Length = 565
Score = 126 bits (317), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 105/198 (53%), Gaps = 18/198 (9%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLR 341
G GL+NLGNTCF+N+ LQCL T L D+ L FR+ G E+ AF D++
Sbjct: 210 GHVGLRNLGNTCFLNALLQCLSSTRPLRDFCLRRDFRQEVPGG--GRAQELTEAFADVIG 267
Query: 342 KLWAPGAA-PVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNR-------- 392
LW P + V+P F++ ++ P FSG++Q D+QE L L++ LH ++NR
Sbjct: 268 ALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPI 327
Query: 393 VKCKPYAEAKDGDGR-------SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVC 445
+ P G SD+D A+ W+ +L R DS IVDL GQ KS L C C
Sbjct: 328 LASSPAPHPPRLGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQAC 387
Query: 446 KKVSVTFDPFMYLSLPLP 463
S TF+ F LSLP+P
Sbjct: 388 GYRSTTFEVFCDLSLPIP 405
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 733 VSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSK 792
VSL C F EE L E+ C C++ +++KKL + R P ILV+HL RFS SR S
Sbjct: 414 VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSI 473
Query: 793 NKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQWY 852
K VDFP+ L L + + S Y LYA+ NH GS+ GHYTA G W+
Sbjct: 474 KKSSVGVDFPLQRLSLGDFAS--DKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTG-WH 530
Query: 853 DFDDSHVYPISQDKIKTSAAYVLFYRRVVE 882
++DS V P+S++++ +S YVLFY+ + E
Sbjct: 531 VYNDSRVSPVSENQVASSEGYVLFYQLMQE 560
>sp|Q754R5|UBP4_ASHGO Ubiquitin carboxyl-terminal hydrolase 4 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=DOA4 PE=3 SV=2
Length = 852
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 106/213 (49%), Gaps = 19/213 (8%)
Query: 285 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKL 343
GL N GN+C+M+ +QCL+ T +L FL + Y IN ++ LG G +A F L+ ++
Sbjct: 489 GLVNCGNSCYMSCIIQCLLGTQELCTMFLNNSYQNHINLNSRLGSKGLLARYFSQLIHQM 548
Query: 344 WAPGA----------APVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRV 393
+ G V P FK F Q D QE FLLDGLHEDLN+
Sbjct: 549 YQYGKDIRKKMGNEKTAVIPTQFKIACGSINSSFKDNTQQDCQEFCQFLLDGLHEDLNQC 608
Query: 394 KCKPYAEAKDGDGRSDEDIADEY------WQNHLARNDSIIVDLCQGQYKSTLVCPVCKK 447
P + + ++ W+ +L + S+IVDL QGQY S L C VC++
Sbjct: 609 GNNPPLKELSEEAEKMREMMPMRLASAIEWERYLTTDFSVIVDLFQGQYASQLQCKVCQR 668
Query: 448 VSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGT 480
S T+ PF LS+P+PST R TLT T+ T
Sbjct: 669 TSTTYQPFSVLSVPVPST--RTCTLTDCFTEFT 699
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 90/173 (52%), Gaps = 21/173 (12%)
Query: 725 LPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKR 784
+P + +L C F E L E+ W CP CKK ++KK+ + RLP L+IHLKR
Sbjct: 681 VPVPSTRTCTLTDCFTEFTKIETLEQEEQWSCPSCKKRQPSTKKITITRLPRNLIIHLKR 740
Query: 785 FSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDK--------LSNR-------YMLYAVS 829
F + +KN + +V +P LDL+ A+ DK L +R Y LY ++
Sbjct: 741 FD-NMLNKNNV--FVSYP-SVLDLTAFWANDYDKKVTNNNVELPSRGQVPPFNYQLYGIA 796
Query: 830 NHYGSMGGGHYTAFVHHGGG-QWYDFDDSHVYPI-SQDKIKTSAAYVLFYRRV 880
H G++ GHYTA+V+ G W +DD++ I S + T AYVLFY R+
Sbjct: 797 CHDGTLRAGHYTAYVNKGAVLGWCYYDDTNWRQIRSAREYITQNAYVLFYHRI 849
>sp|A7TGY3|UBP4_VANPO Ubiquitin carboxyl-terminal hydrolase 4 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=DOA4 PE=3
SV=1
Length = 882
Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 285 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKL 343
GL+N+GN+C+MN +QCL+ T +L FL + Y + IN ++ LG G +A F L+ +
Sbjct: 520 GLENMGNSCYMNCIIQCLLSTHELSQIFLNNSYEKHINLNSKLGSKGVLAKYFARLVHTM 579
Query: 344 WAPGA--------APVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKC 395
+ G+ P+ P FK F Q DSQE FLLDGLHEDLN+
Sbjct: 580 YREGSFKRPLEKNKPIQPIQFKMACGSINSLFKDNTQQDSQEFCQFLLDGLHEDLNQCGA 639
Query: 396 KPYAEAKDGDGRSDED-----IADEY-WQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVS 449
P + D + IA W+ L + S+IVDL QGQY S L C VC S
Sbjct: 640 NPPLKELSEDAEKMREKLSMRIASSIEWERFLTTDFSVIVDLFQGQYASQLKCKVCGCTS 699
Query: 450 VTFDPFMYLSLPLP 463
T+ F LS+P+P
Sbjct: 700 TTYQTFSVLSVPVP 713
Score = 106 bits (264), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 93/170 (54%), Gaps = 22/170 (12%)
Query: 732 SVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFS 791
S + C F E LG +++W CP CKK ++KKL + RLP L+IHLKRF
Sbjct: 717 SCHILDCFNEFTKVEKLGTDELWSCPTCKKKQPSTKKLTITRLPRNLIIHLKRFDNMM-- 774
Query: 792 KNKLETYVDFPVDNLDLSTHVAH---------LNDKLSN-------RYMLYAVSNHYGSM 835
NK +V +P LDL+ + A+ + D+L RY L AV++H GS+
Sbjct: 775 -NKNNVFVKYPFL-LDLTPYWANDFDGRLPPGVTDELPTRGQVPPFRYKLNAVASHVGSL 832
Query: 836 GGGHYTAFVHHGGGQ-WYDFDDSHVYPI-SQDKIKTSAAYVLFYRRVVEV 883
GGHYTA+V+ G + W+ FDD+ PI ++ + T AYVLFY RV V
Sbjct: 833 YGGHYTAYVNKGINRGWHYFDDTSYRPIKNETECITPNAYVLFYHRVYGV 882
>sp|P39944|UBP5_YEAST Ubiquitin carboxyl-terminal hydrolase 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP5 PE=1 SV=1
Length = 805
Score = 120 bits (300), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 99/196 (50%), Gaps = 15/196 (7%)
Query: 283 LTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLR 341
+ GL+N+GN C+MN LQCLV T LV FL + Y IN D+ G G +A F L+
Sbjct: 445 IVGLENIGNCCYMNCILQCLVGTHDLVRMFLDNTYLNFINFDSSRGSKGLLAKNFAILVN 504
Query: 342 KLWAPGA--------APVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRV 393
+ GA PV FK P +S Q D QE FLLDGLHEDLN+
Sbjct: 505 NMHRHGAFTPPNVRTIPVQTIQFKKICGHINPMYSDSMQQDCQEFCQFLLDGLHEDLNQN 564
Query: 394 KCKPY-AEAKDGDGRSDEDIADEY-----WQNHLARNDSIIVDLCQGQYKSTLVCPVCKK 447
K + + D + R E ++ W+ L + S I+DL QGQY S L C VC+
Sbjct: 565 GSKKHLKQLSDEEERMREKMSIRKASALEWERFLLTDFSAIIDLFQGQYASRLQCQVCEH 624
Query: 448 VSVTFDPFMYLSLPLP 463
S T+ F LS+P+P
Sbjct: 625 TSTTYQTFSVLSVPVP 640
Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 92/166 (55%), Gaps = 20/166 (12%)
Query: 731 ESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF 790
++ ++ C F E LG ++ W CP C K ++K+L + RLP+ L+I+LKRF
Sbjct: 643 KTCNILDCFREFTKCERLGVDEQWSCPKCLKKQPSTKQLKITRLPKKLIINLKRFDN--- 699
Query: 791 SKNKLETYVDFPVDNLDLS-------THVAHLNDKLSN-------RYMLYAVSNHYGSMG 836
NK +V +P +LDL+ H A +N+ + RY LY V+ H GS+
Sbjct: 700 QMNKNNVFVQYPY-SLDLTPYWARDFNHEAIVNEDIPTRGQVPPFRYRLYGVACHSGSLY 758
Query: 837 GGHYTAFVHHGGGQ-WYDFDDSHVYPIS-QDKIKTSAAYVLFYRRV 880
GGHYT++V+ G + WY FDDS PI+ + T +AYVLFY R+
Sbjct: 759 GGHYTSYVYKGPKKGWYFFDDSLYRPITFSTEFITPSAYVLFYERI 804
>sp|Q9HFS7|UBP4_KLULA Ubiquitin carboxyl-terminal hydrolase 4 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=DOA4 PE=3 SV=1
Length = 796
Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 113/231 (48%), Gaps = 21/231 (9%)
Query: 251 HSNGSLTNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVD 310
H+NG TN N+S+ SG + GL NLGN+C++N +QCL+ +L
Sbjct: 402 HANG--TNCIVSSNGNNSVAKSGHPSINLDFAI-GLVNLGNSCYLNCIIQCLLGCHELSY 458
Query: 311 YFLGDYFRE-INHDNPLGMDGEIALAFGDLLRKLWAPG-----------AAPVSPRTFKS 358
FL + +R+ +N ++ LG G +A F L++K++ G + V P FK
Sbjct: 459 IFLTNSYRKHVNVNSRLGSKGLLANYFSQLVQKMYQQGKLQAYNNTNMESTAVHPTQFKL 518
Query: 359 KLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKP-----YAEAKDGDGRSDEDIA 413
F G Q D QE FLLDGLHEDLN+ P EA+ IA
Sbjct: 519 ACGSINSLFKGKQQQDCQEFCQFLLDGLHEDLNQCGTNPPLKELSPEAEKMRETMPMRIA 578
Query: 414 DEY-WQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLP 463
W+ +L + S+IVDL QGQY S L C +C S T+ F LS+P+P
Sbjct: 579 SAIEWERYLTTDFSVIVDLFQGQYASQLRCKICAHTSTTYQAFSVLSVPVP 629
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 90/173 (52%), Gaps = 21/173 (12%)
Query: 725 LPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKR 784
+P S ++Y C + F E L +++WYCP CK+ ++K++ + RLP L+IHLKR
Sbjct: 626 VPVPRARSCTIYDCFKEFTKLETLEKDELWYCPYCKQRQPSTKQIIITRLPNNLIIHLKR 685
Query: 785 FSYSRFSKNKLETYVDFPVDNLDLS----------------THVAHLNDKLSNRYMLYAV 828
F NK +V++P + LDL+ + K Y L+AV
Sbjct: 686 FDNMM---NKNNVFVNYP-NELDLTGFWIDDYNGEMPKDNGVSLPLRGQKPPFNYRLFAV 741
Query: 829 SNHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPI-SQDKIKTSAAYVLFYRRV 880
++H G++ GGHYT+FV G W FDD I +D+ T AYVLFYRRV
Sbjct: 742 ASHSGTLYGGHYTSFVDKGRVGWCSFDDVSWRKIRRKDEYITPNAYVLFYRRV 794
>sp|Q6FQF0|UBP4_CANGA Ubiquitin carboxyl-terminal hydrolase 4 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DOA4 PE=3 SV=1
Length = 887
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 100/195 (51%), Gaps = 15/195 (7%)
Query: 285 GLQNLGNTCFMNSALQCLVHTPKLVDYFL-GDYFREINHDNPLGMDGEIALAFGDLLRKL 343
GL+N+GN+C++N +QC+ T +L+ FL G Y + IN + LG G ++ F LL+ +
Sbjct: 526 GLENMGNSCYINCIIQCIFATTELIKIFLNGTYAKHINKQSKLGSKGVLSHNFAKLLKDM 585
Query: 344 WAPGAA--------PVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKC 395
+ ++ V FK A F +Q D E FLLDGLHEDLN+
Sbjct: 586 YEENSSKKIGKKHGAVKTLQFKMACASVNSLFKDASQQDCLEFCQFLLDGLHEDLNQCGA 645
Query: 396 KP-----YAEAKDGDGRSDEDIADEY-WQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVS 449
P EA+ +A W+ +L + SIIVDL QGQY S L C VC + S
Sbjct: 646 NPPLKELSPEAEKMRENLSLRVASSIEWERYLTTDFSIIVDLFQGQYASQLRCKVCNRTS 705
Query: 450 VTFDPFMYLSLPLPS 464
T+ F LS+P+PS
Sbjct: 706 TTYQAFSVLSVPVPS 720
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 22/169 (13%)
Query: 731 ESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF 790
+S L C F E L ++ W+CP CKK ++KKL + RLP L+IHLKRF
Sbjct: 722 KSCGLLDCFIEFTKTENLEVDEQWFCPSCKKKQPSTKKLTITRLPRNLIIHLKRFDNMM- 780
Query: 791 SKNKLETYVDFPVDNLDLSTHVAH---------LNDKLSNR-------YMLYAVSNHYGS 834
NK +V +P LDL+ A+ + D++ R Y LY + H+G+
Sbjct: 781 --NKNNIFVRYP-QILDLTPFWANDSDGKLPPGITDEIPARGQVPPFNYRLYGAACHFGT 837
Query: 835 MGGGHYTAFVHHGGGQ-WYDFDDSHVYPIS-QDKIKTSAAYVLFYRRVV 881
+ GGHYT++V G + W FDD+ P+ Q++ + +AYVLFY R+
Sbjct: 838 LYGGHYTSYVDKGPEKGWIYFDDTVYRPVRFQNEFISPSAYVLFYHRIT 886
>sp|Q5UQR3|UBPL1_MIMIV Probable ubiquitin carboxyl-terminal hydrolase R319 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R319 PE=3 SV=1
Length = 468
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 5/156 (3%)
Query: 727 KRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFS 786
K E +++Y CL + ++E L +++W C GC + QA KK LW P +LVI KRF
Sbjct: 308 KNMYEQLNVYDCLREYFSQETLDADNLWNCEGCHEKVQAIKKTKLWTTPYVLVIQFKRFG 367
Query: 787 YSRFSKNKLETYVDFPVDNLDLSTHVA--HLNDKLSNRYMLYAVSNHYGSMGGGHYTAFV 844
+R +K+ ++++P+D LD+S+ + D + +Y L V NH+G + GHY +
Sbjct: 368 MTRIAKD--NRFINYPMDELDVSSVICSQQFEDSVQTKYKLQCVINHHGGLNNGHYFTYS 425
Query: 845 H-HGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRR 879
G+WY+F+D++ ++ + I AY+LFY R
Sbjct: 426 KIENTGEWYEFNDTYTGKVTDNHIVNQNAYILFYIR 461
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 99/282 (35%), Gaps = 87/282 (30%)
Query: 268 SITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD------------ 315
SI S +G G+TG+ NLGNTC+MNSALQ L H L++Y +
Sbjct: 26 SINKSVDNGSKNTHGITGIMNLGNTCYMNSALQALSHNYLLINYLFMNKKQIIRTLLTNA 85
Query: 316 --YFREINH-------------------------------DNPLGMDGEIALAFGDLLRK 342
F++ ++ D + ++ I L
Sbjct: 86 RKIFKDCDNFKIESTISPIPLELRKKIQSENYHLSMLTVEDVNILLNNTITAQIIRLFEC 145
Query: 343 LWAPGAAPVSPRTFKSKLARFAPQ-FSGFNQHDSQELLAFLLDGLHEDL----------- 390
+W V P +F+ + F G+ QHD++E + ++ + E+L
Sbjct: 146 MWKNNCVVV-PTSFRKVFGEVRDKFFFGYEQHDAEEAYSCIIQKMQEELAEKRTIRFKTT 204
Query: 391 ---------------NRVKCKPYAEAKDGDGRSDEDIADEY------------WQNHLAR 423
+V C P + KD + I + + + +
Sbjct: 205 RHSVGEYIKYMNDVKEKVSCLPNGKEKDIVMNKFKQIKKQMPRESLTAESFREMKKYYEQ 264
Query: 424 NDSIIVDLCQGQYKSTLVCP--VCKKVSVTFDPFMYLSLPLP 463
S I ++ G S++ CP C + FD F +LSL +P
Sbjct: 265 GYSYITEIFSGYVHSSICCPNTSCGFTNDRFDAFTHLSLSIP 306
>sp|A5PN09|UBP20_DANRE Ubiquitin carboxyl-terminal hydrolase 20 OS=Danio rerio GN=usp20
PE=2 SV=1
Length = 911
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 1/153 (0%)
Query: 733 VSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSK 792
V+L CL AF + L ++M+ C CKK K + RLPEIL IHLKRF +
Sbjct: 537 VTLEDCLAAFFAADELKGDNMYSCERCKKLRNGVKYCKVLRLPEILCIHLKRFRHEVMYS 596
Query: 793 NKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHG-GGQW 851
K+ ++V FP++ LDL +A + Y L +V H+G+ G GHY A+ + GQW
Sbjct: 597 FKINSHVSFPLEGLDLKPFLAKESPSQITTYDLLSVICHHGTAGSGHYIAYCQNVINGQW 656
Query: 852 YDFDDSHVYPISQDKIKTSAAYVLFYRRVVEVS 884
Y+FDD +V + + ++ + AYVLFYR+ E S
Sbjct: 657 YEFDDQYVTEVHETVVQNAEAYVLFYRKSSEES 689
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIAL--AFGDL 339
GLTG++N+GN+C+MN+ALQ L + P L +F + + D + AL ++ L
Sbjct: 146 GLTGMKNIGNSCYMNAALQALSNCPPLTQFFQ-------DCSGLVRTDKKPALCKSYQKL 198
Query: 340 LRKLW-APGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLN 391
+ +LW + V P T + P F G+ Q D+QE L L+D LHE+L
Sbjct: 199 ISELWHKKRPSYVVPTTLFHGIKLVNPMFRGYAQQDTQEFLRCLMDQLHEELK 251
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 422 ARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLP 463
+R S+I D+ G S + C C +VS T + F LSLP+P
Sbjct: 439 SRFRSVISDIFDGSILSLVQCLTCDRVSTTVETFQDLSLPIP 480
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 343,832,019
Number of Sequences: 539616
Number of extensions: 15462223
Number of successful extensions: 86211
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 84175
Number of HSP's gapped (non-prelim): 1377
length of query: 884
length of database: 191,569,459
effective HSP length: 127
effective length of query: 757
effective length of database: 123,038,227
effective search space: 93139937839
effective search space used: 93139937839
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)