Query 002757
Match_columns 884
No_of_seqs 423 out of 2184
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5560 UBP12 Ubiquitin C-term 100.0 6E-125 1E-129 1026.3 40.5 734 29-881 43-823 (823)
2 KOG1870 Ubiquitin C-terminal h 100.0 6.6E-99 1E-103 913.1 39.7 820 22-881 3-842 (842)
3 COG5533 UBP5 Ubiquitin C-termi 100.0 1.3E-64 2.7E-69 512.6 21.0 333 281-880 69-414 (415)
4 KOG1865 Ubiquitin carboxyl-ter 100.0 1.3E-64 2.9E-69 555.8 22.3 305 280-880 105-410 (545)
5 cd02663 Peptidase_C19G A subfa 100.0 7.9E-63 1.7E-67 541.0 26.6 287 285-878 1-300 (300)
6 cd02660 Peptidase_C19D A subfa 100.0 3.7E-60 8E-65 527.3 30.1 318 284-878 1-328 (328)
7 cd02671 Peptidase_C19O A subfa 100.0 3.7E-60 7.9E-65 523.0 29.7 299 277-878 18-332 (332)
8 cd02668 Peptidase_C19L A subfa 100.0 4.7E-60 1E-64 524.7 29.7 294 285-878 1-324 (324)
9 cd02667 Peptidase_C19K A subfa 100.0 8.6E-60 1.9E-64 511.4 25.2 252 285-878 1-279 (279)
10 cd02669 Peptidase_C19M A subfa 100.0 1.1E-59 2.3E-64 539.5 27.0 305 278-878 114-440 (440)
11 KOG1868 Ubiquitin C-terminal h 100.0 4.4E-60 9.6E-65 544.9 17.9 342 279-883 297-649 (653)
12 cd02664 Peptidase_C19H A subfa 100.0 6.2E-59 1.3E-63 515.7 25.9 277 285-878 1-327 (327)
13 cd02657 Peptidase_C19A A subfa 100.0 1.4E-57 3.1E-62 501.3 27.7 287 285-878 1-305 (305)
14 cd02658 Peptidase_C19B A subfa 100.0 3.3E-57 7E-62 499.8 29.4 292 285-878 1-311 (311)
15 cd02661 Peptidase_C19E A subfa 100.0 6.7E-57 1.5E-61 495.5 28.7 302 283-877 1-303 (304)
16 cd02659 peptidase_C19C A subfa 100.0 2E-56 4.3E-61 498.6 28.6 298 282-881 1-333 (334)
17 cd02662 Peptidase_C19F A subfa 100.0 1.9E-51 4.1E-56 435.9 22.4 122 733-878 96-240 (240)
18 KOG1873 Ubiquitin-specific pro 100.0 1.8E-50 3.9E-55 450.4 11.7 149 731-880 676-877 (877)
19 cd02674 Peptidase_C19R A subfa 100.0 4.7E-49 1E-53 415.6 21.0 147 732-878 83-230 (230)
20 cd02673 Peptidase_C19Q A subfa 100.0 4.8E-46 1E-50 392.7 20.1 129 734-878 111-245 (245)
21 KOG1867 Ubiquitin-specific pro 100.0 3.2E-46 6.8E-51 424.2 17.3 323 279-881 157-485 (492)
22 cd02665 Peptidase_C19I A subfa 100.0 2.7E-45 5.9E-50 379.4 17.0 126 734-878 94-228 (228)
23 PF00443 UCH: Ubiquitin carbox 100.0 1.9E-44 4.2E-49 387.0 22.1 258 283-877 1-269 (269)
24 KOG0944 Ubiquitin-specific pro 100.0 5.9E-44 1.3E-48 395.2 20.9 154 278-464 302-465 (763)
25 cd02666 Peptidase_C19J A subfa 100.0 5E-44 1.1E-48 393.8 15.7 158 283-464 1-177 (343)
26 KOG1866 Ubiquitin carboxyl-ter 100.0 3.4E-44 7.4E-49 398.6 4.3 304 279-883 91-437 (944)
27 cd02257 Peptidase_C19 Peptidas 100.0 4E-40 8.7E-45 349.0 21.5 142 733-878 99-255 (255)
28 COG5077 Ubiquitin carboxyl-ter 100.0 8.3E-42 1.8E-46 379.6 7.4 296 280-882 190-513 (1089)
29 cd02672 Peptidase_C19P A subfa 100.0 9E-41 1.9E-45 357.3 14.0 135 733-878 117-268 (268)
30 KOG4598 Putative ubiquitin-spe 100.0 1.1E-40 2.3E-45 366.3 2.8 147 734-881 215-442 (1203)
31 COG5207 UBP14 Isopeptidase T [ 100.0 1.3E-37 2.8E-42 333.3 18.3 146 283-461 303-453 (749)
32 cd02670 Peptidase_C19N A subfa 100.0 4.2E-35 9.1E-40 306.0 16.1 123 732-878 79-241 (241)
33 KOG1863 Ubiquitin carboxyl-ter 100.0 1.2E-35 2.7E-40 369.6 13.5 298 281-882 167-487 (1093)
34 KOG1864 Ubiquitin-specific pro 100.0 8.9E-34 1.9E-38 327.1 15.0 331 279-880 228-572 (587)
35 PF13423 UCH_1: Ubiquitin carb 100.0 4.1E-30 9E-35 281.3 23.7 284 284-859 1-295 (295)
36 KOG1871 Ubiquitin-specific pro 100.0 3.8E-29 8.1E-34 263.7 12.9 122 759-881 287-420 (420)
37 KOG2026 Spindle pole body prot 100.0 7.3E-29 1.6E-33 260.0 14.1 304 276-880 127-441 (442)
38 KOG1872 Ubiquitin-specific pro 99.9 2.4E-26 5.2E-31 249.1 5.8 150 282-459 104-261 (473)
39 PF06337 DUSP: DUSP domain; I 99.8 1.5E-20 3.2E-25 171.2 7.7 98 30-137 1-99 (99)
40 smart00695 DUSP Domain in ubiq 99.8 9.8E-19 2.1E-23 154.7 9.6 83 28-137 2-85 (86)
41 PF14836 Ubiquitin_3: Ubiquiti 99.5 8.5E-14 1.9E-18 119.8 8.8 83 153-236 2-88 (88)
42 KOG1275 PAB-dependent poly(A) 99.5 3E-13 6.4E-18 155.9 13.8 123 754-877 702-860 (1118)
43 PF14533 USP7_C2: Ubiquitin-sp 98.1 3E-05 6.4E-10 80.6 11.6 143 454-608 2-156 (213)
44 KOG1864 Ubiquitin-specific pro 96.6 0.0032 7E-08 74.4 6.7 104 286-390 34-152 (587)
45 PF15499 Peptidase_C98: Ubiqui 96.3 0.0033 7.1E-08 65.0 3.6 81 755-858 172-252 (275)
46 PF14560 Ubiquitin_2: Ubiquiti 95.4 0.15 3.2E-06 45.0 9.9 65 163-227 15-81 (87)
47 PTZ00044 ubiquitin; Provisiona 94.8 0.14 3.1E-06 43.7 7.9 66 159-230 8-73 (76)
48 cd01807 GDX_N ubiquitin-like d 94.3 0.21 4.5E-06 42.6 7.6 64 160-229 9-72 (74)
49 cd01796 DDI1_N DNA damage indu 94.0 0.21 4.7E-06 42.2 7.1 62 160-226 8-69 (71)
50 cd01799 Hoil1_N Ubiquitin-like 93.6 0.27 5.9E-06 42.1 7.0 60 161-226 12-72 (75)
51 cd01806 Nedd8 Nebb8-like ubiq 93.3 0.5 1.1E-05 40.2 8.3 64 160-229 9-72 (76)
52 cd01803 Ubiquitin Ubiquitin. U 93.1 0.46 9.9E-06 40.4 7.8 65 160-230 9-73 (76)
53 cd01810 ISG15_repeat2 ISG15 ub 93.0 0.54 1.2E-05 40.0 7.9 66 159-230 6-71 (74)
54 cd01763 Sumo Small ubiquitin-r 92.9 0.72 1.6E-05 40.7 8.9 64 160-229 20-83 (87)
55 cd01812 BAG1_N Ubiquitin-like 92.7 0.41 8.9E-06 40.1 6.8 62 160-227 8-69 (71)
56 cd01798 parkin_N amino-termina 92.7 0.47 1E-05 39.8 7.1 61 160-226 7-67 (70)
57 cd01789 Alp11_N Ubiquitin-like 92.4 0.95 2.1E-05 39.7 8.9 65 163-227 14-79 (84)
58 cd01794 DC_UbP_C dendritic cel 92.0 0.57 1.2E-05 39.5 6.8 61 160-226 7-67 (70)
59 PF00789 UBX: UBX domain; Int 91.7 0.82 1.8E-05 39.7 7.7 68 158-227 13-81 (82)
60 cd01795 USP48_C USP ubiquitin- 91.3 0.56 1.2E-05 41.7 6.0 62 163-229 16-77 (107)
61 PF00240 ubiquitin: Ubiquitin 91.3 1.1 2.4E-05 37.3 7.7 64 160-229 4-67 (69)
62 cd01809 Scythe_N Ubiquitin-lik 91.1 1 2.3E-05 37.7 7.5 61 160-226 9-69 (72)
63 cd01800 SF3a120_C Ubiquitin-li 90.4 1.2 2.5E-05 38.2 7.2 63 162-230 8-70 (76)
64 cd01808 hPLIC_N Ubiquitin-like 90.3 1.4 3E-05 37.1 7.5 58 164-227 12-69 (71)
65 cd01805 RAD23_N Ubiquitin-like 90.0 2 4.3E-05 36.7 8.4 64 160-229 9-74 (77)
66 cd01804 midnolin_N Ubiquitin-l 89.5 1.6 3.6E-05 37.5 7.5 62 161-229 11-72 (78)
67 cd01802 AN1_N ubiquitin-like d 89.1 2.5 5.5E-05 38.5 8.7 65 160-230 36-100 (103)
68 cd01791 Ubl5 UBL5 ubiquitin-li 89.1 2.3 4.9E-05 36.2 7.8 61 161-227 11-71 (73)
69 cd01793 Fubi Fubi ubiquitin-li 88.8 1.8 4E-05 36.7 7.2 62 162-229 9-70 (74)
70 cd01792 ISG15_repeat1 ISG15 ub 88.6 2.4 5.3E-05 36.6 8.0 66 160-229 11-76 (80)
71 cd01797 NIRF_N amino-terminal 88.3 2.3 5E-05 36.7 7.5 60 165-230 15-75 (78)
72 smart00166 UBX Domain present 87.7 3.9 8.4E-05 35.3 8.7 69 158-227 11-79 (80)
73 cd01767 UBX UBX (ubiquitin reg 86.2 4.9 0.00011 34.4 8.4 67 158-227 9-75 (77)
74 PF11976 Rad60-SLD: Ubiquitin- 86.1 3.5 7.6E-05 34.6 7.4 60 159-224 8-68 (72)
75 PF11543 UN_NPL4: Nuclear pore 85.8 2.2 4.8E-05 37.0 6.0 65 161-227 13-78 (80)
76 cd01771 Faf1_UBX Faf1 UBX doma 85.3 6 0.00013 34.3 8.5 71 157-229 10-80 (80)
77 cd01774 Faf1_like2_UBX Faf1 ik 84.4 5.1 0.00011 35.2 7.7 69 158-227 11-83 (85)
78 cd01813 UBP_N UBP ubiquitin pr 84.4 4.3 9.2E-05 34.6 7.0 64 160-226 8-71 (74)
79 cd01773 Faf1_like1_UBX Faf1 ik 84.0 8.2 0.00018 33.6 8.6 71 157-229 11-81 (82)
80 smart00213 UBQ Ubiquitin homol 83.9 3.8 8.2E-05 33.1 6.4 54 162-221 10-63 (64)
81 cd01769 UBL Ubiquitin-like dom 83.0 4.4 9.6E-05 33.2 6.6 60 161-226 7-66 (69)
82 PF05408 Peptidase_C28: Foot-a 81.9 0.69 1.5E-05 45.8 1.4 24 281-304 31-54 (193)
83 PF02196 RBD: Raf-like Ras-bin 79.9 14 0.00029 31.3 8.4 64 158-228 7-70 (71)
84 cd01817 RGS12_RBD Ubiquitin do 75.6 15 0.00033 31.1 7.2 65 158-229 6-70 (73)
85 PF05408 Peptidase_C28: Foot-a 74.9 3.5 7.7E-05 40.9 3.9 35 830-865 129-165 (193)
86 COG3478 Predicted nucleic-acid 74.2 2.7 5.9E-05 34.1 2.4 37 751-787 2-40 (68)
87 cd01772 SAKS1_UBX SAKS1-like U 73.7 16 0.00034 31.6 7.3 68 158-227 11-78 (79)
88 cd01760 RBD Ubiquitin-like dom 73.5 14 0.00031 31.3 6.8 65 158-228 6-71 (72)
89 cd06406 PB1_P67 A PB1 domain i 71.9 21 0.00046 30.9 7.4 44 151-197 3-46 (80)
90 PF11470 TUG-UBL1: GLUT4 regul 69.8 8.1 0.00017 32.1 4.3 59 159-223 4-62 (65)
91 TIGR00601 rad23 UV excision re 66.5 17 0.00036 41.3 7.4 64 160-229 9-75 (378)
92 cd01770 p47_UBX p47-like ubiqu 66.2 38 0.00083 29.2 8.0 61 158-221 11-72 (79)
93 PF14560 Ubiquitin_2: Ubiquiti 65.0 44 0.00095 29.2 8.4 63 484-546 14-79 (87)
94 smart00455 RBD Raf-like Ras-bi 61.8 33 0.00071 28.9 6.6 64 158-228 6-69 (70)
95 KOG1870 Ubiquitin C-terminal h 61.3 4.3 9.4E-05 51.1 1.8 120 732-863 481-600 (842)
96 KOG0010 Ubiquitin-like protein 61.0 22 0.00049 40.9 7.1 71 153-229 16-86 (493)
97 PF08817 YukD: WXG100 protein 60.8 31 0.00066 29.7 6.5 72 153-226 3-78 (79)
98 cd01768 RA RA (Ras-associating 59.3 58 0.0013 28.2 8.2 53 484-536 13-67 (87)
99 PF14533 USP7_C2: Ubiquitin-sp 57.3 45 0.00098 34.7 8.3 65 162-229 34-101 (213)
100 PF00788 RA: Ras association ( 56.3 62 0.0014 28.1 8.0 44 152-195 4-52 (93)
101 cd01788 ElonginB Ubiquitin-lik 55.9 59 0.0013 30.1 7.5 68 161-234 11-86 (119)
102 PF08715 Viral_protease: Papai 54.7 22 0.00048 39.2 5.6 79 280-387 99-178 (320)
103 PLN02560 enoyl-CoA reductase 53.1 45 0.00097 36.8 7.7 65 165-232 17-84 (308)
104 PF09379 FERM_N: FERM N-termin 50.6 1.4E+02 0.003 25.3 9.0 60 159-219 4-65 (80)
105 cd01815 BMSC_UbP_N Ubiquitin-l 48.4 37 0.00081 29.0 4.8 51 170-226 19-72 (75)
106 PF01473 CW_binding_1: Putativ 44.4 17 0.00038 22.1 1.7 14 843-857 3-16 (19)
107 cd01787 GRB7_RA RA (RAS-associ 43.4 1E+02 0.0022 27.2 6.7 62 470-535 3-65 (85)
108 smart00314 RA Ras association 43.2 1.8E+02 0.0039 25.4 8.7 52 485-536 17-69 (90)
109 KOG1871 Ubiquitin-specific pro 42.5 12 0.00027 41.5 1.4 114 278-392 173-316 (420)
110 cd00196 UBQ Ubiquitin-like pro 41.9 71 0.0015 24.2 5.6 37 160-196 6-42 (69)
111 cd01790 Herp_N Homocysteine-re 41.6 1.1E+02 0.0025 26.4 6.8 56 164-225 16-75 (79)
112 cd01768 RA RA (Ras-associating 41.4 1.1E+02 0.0023 26.6 7.0 40 161-200 12-53 (87)
113 KOG4495 RNA polymerase II tran 41.3 42 0.00092 29.8 4.1 56 161-220 11-66 (110)
114 KOG1769 Ubiquitin-like protein 40.6 1.6E+02 0.0034 26.7 7.6 66 152-224 22-87 (99)
115 cd01777 SNX27_RA Ubiquitin dom 39.8 56 0.0012 28.8 4.6 40 151-191 2-41 (87)
116 cd06535 CIDE_N_CAD CIDE_N doma 39.2 57 0.0012 28.0 4.5 31 171-201 20-50 (77)
117 KOG3751 Growth factor receptor 36.9 36 0.00078 39.4 3.8 75 462-540 181-256 (622)
118 cd01791 Ubl5 UBL5 ubiquitin-li 36.7 1.9E+02 0.0042 24.4 7.5 57 485-548 13-71 (73)
119 smart00666 PB1 PB1 domain. Pho 36.7 1.2E+02 0.0027 25.7 6.5 42 152-195 3-44 (81)
120 cd01782 AF6_RA_repeat1 Ubiquit 35.7 3.2E+02 0.007 25.1 8.8 73 459-531 10-87 (112)
121 cd01801 Tsc13_N Ubiquitin-like 35.3 91 0.002 26.5 5.4 54 169-226 20-74 (77)
122 PF12436 USP7_ICP0_bdg: ICP0-b 34.9 56 0.0012 34.9 4.9 64 165-229 88-152 (249)
123 PF13881 Rad60-SLD_2: Ubiquiti 34.5 2.8E+02 0.0061 25.7 8.7 74 151-230 3-87 (111)
124 cd01779 Myosin_IXb_RA ubitquit 33.5 2.6E+02 0.0056 25.1 7.6 53 472-524 13-65 (105)
125 smart00295 B41 Band 4.1 homolo 33.3 2.9E+02 0.0063 27.8 9.9 66 150-217 3-70 (207)
126 PF00788 RA: Ras association ( 32.9 2.4E+02 0.0052 24.3 8.0 66 471-536 4-71 (93)
127 PF12436 USP7_ICP0_bdg: ICP0-b 32.2 96 0.0021 33.1 6.1 48 152-199 178-227 (249)
128 smart00314 RA Ras association 32.0 2.3E+02 0.005 24.6 7.6 39 160-198 14-54 (90)
129 PF15499 Peptidase_C98: Ubiqui 31.3 1.5E+02 0.0032 31.6 6.9 27 287-313 6-32 (275)
130 COG3651 Uncharacterized protei 31.2 32 0.00069 30.8 1.8 18 24-41 73-90 (125)
131 cd01789 Alp11_N Ubiquitin-like 29.5 2.4E+02 0.0052 24.5 7.1 31 486-516 15-45 (84)
132 PF00770 Peptidase_C5: Adenovi 29.2 68 0.0015 31.8 3.9 31 826-856 21-53 (183)
133 cd01816 Raf_RBD Ubiquitin doma 27.9 3.5E+02 0.0075 23.2 7.2 67 159-228 7-73 (74)
134 KOG1867 Ubiquitin-specific pro 27.4 22 0.00047 41.9 0.2 103 281-387 75-181 (492)
135 cd01811 OASL_repeat1 2'-5' oli 26.8 2.5E+02 0.0054 24.0 6.1 64 162-227 11-75 (80)
136 PF13019 Telomere_Sde2: Telome 26.7 3.5E+02 0.0075 26.9 8.3 54 472-525 3-56 (162)
137 cd01615 CIDE_N CIDE_N domain, 24.6 1.7E+02 0.0036 25.4 5.0 31 171-201 20-50 (78)
138 cd01802 AN1_N ubiquitin-like d 24.6 2.9E+02 0.0063 25.1 7.0 57 453-515 13-69 (103)
139 cd01799 Hoil1_N Ubiquitin-like 23.8 3E+02 0.0065 23.4 6.5 32 485-516 14-45 (75)
140 cd01814 NTGP5 Ubiquitin-like N 23.8 2.3E+02 0.005 26.3 6.0 54 161-220 15-75 (113)
141 PF09855 DUF2082: Nucleic-acid 23.0 69 0.0015 26.6 2.3 34 754-787 1-36 (64)
142 cd01806 Nedd8 Nebb8-like ubiq 20.8 2.5E+02 0.0055 23.2 5.6 41 472-516 3-43 (76)
143 PF00240 ubiquitin: Ubiquitin 20.4 1.7E+02 0.0036 23.9 4.3 33 485-517 7-39 (69)
144 cd06396 PB1_NBR1 The PB1 domai 20.3 3.3E+02 0.0072 23.7 6.0 56 158-216 6-63 (81)
No 1
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-125 Score=1026.33 Aligned_cols=734 Identities=33% Similarity=0.530 Sum_probs=571.2
Q ss_pred CCCeEEEEchHHHHHHHHhcCCCCccccccccccCCCCCCCCCCCCCCcccChhhccccccchhcccccCCcccCCCCCC
Q 002757 29 NDQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSGR 108 (884)
Q Consensus 29 ~g~~~ylIs~~W~~~w~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~l~~~l~e~~ 108 (884)
.++..|++++.|+....++...+ ...||||+-..|+. .++..++..+.++.
T Consensus 43 ~~~~a~i~~y~wyeg~fd~~~~d--------------------g~~pgPi~q~~i~d---------~e~e~lk~sl~e~i 93 (823)
T COG5560 43 QCEYAVIFAYAWYEGMFDRASCD--------------------GGSPGPIVQGPIVD---------FEPESLKKSLREGI 93 (823)
T ss_pred cCceEEEEehHHhhhhccccccc--------------------CCCCCCCCcccccc---------cChhhcchhhhcCC
Confidence 48899999999999887766532 34599999888875 12678999999999
Q ss_pred CEEEeCHHHHHHHHHHcC-CCCcceEEeecCCCc-cCCcccccceEEEEEEecc---------CCeeEEEEcccccHHHH
Q 002757 109 DYALVPGEMWLQALKWHS-DTKVAAKNRKSFLAS-EDDMADVYPLQLRLSVMRE---------TNSLGVKISKKDNAVEL 177 (884)
Q Consensus 109 dy~~vp~~~w~~l~~wYG-~~~~i~R~Vi~~~~~-~~~v~EvyP~~l~l~~~~~---------~~~~~~~~Sk~~ti~~l 177 (884)
||.+|.+.+|+.|++||| .|+.++|.++--+.. ...+ |+||+.++++...+ .....+.+|+..|+.++
T Consensus 94 dysiis~~vw~llvrwyGl~gl~~pr~tvll~ses~p~v-e~yp~~f~lh~Lf~ing~~~n~gh~p~~~s~ss~~tlrdl 172 (823)
T COG5560 94 DYSIISGAVWQLLVRWYGLAGLITPRITVLLPSESAPEV-ESYPVVFKLHWLFSINGSLINLGHDPVPHSASSHGTLRDL 172 (823)
T ss_pred CeeeechHHHHHHHHHhcccccceeeEEeccccccCCcc-ccccceEEEEEEEeccchhhhcCCCcceeeccccchHHHH
Confidence 999999999999999999 678999999765544 5567 99999999987644 13567899999999999
Q ss_pred HHHHHhHcCCCCccEEEEEecCCcceeeccCCC---c--------------cchhhccCCCceEEEE-EEecCccCcccc
Q 002757 178 FKRACKIFSIESELLHIWDFSGQTTLYFLNDKN---K--------------FSKDCLRLSDHEILLE-LQIYGLSDSLKC 239 (884)
Q Consensus 178 ~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~---~--------------tl~~~~l~~~q~illE-~~~~~~w~~~~~ 239 (884)
.+++.++|-++.+++|||++...+...-+...+ + |+.+..... ..++|+ +...+.|+...-
T Consensus 173 ~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~s~f~~~~~~a~~~~~l~~~t~~el~~d~-s~lll~kit~np~wlvdsi 251 (823)
T COG5560 173 SERVMNAFVDPSDDFRLWDVVPEIMGLRLGLDSFFRRYRVLASDGRVLHPLTRLELFEDR-SVLLLSKITRNPDWLVDSI 251 (823)
T ss_pred HHHHHHHhcCcccceeEEEecCCcccccccCHHHHhhcchhccchhhhcccHHHHhccch-hhhHHhhhccCCccceeee
Confidence 999999999999999999987654322111100 0 011111111 111111 113344443210
Q ss_pred cccccccccccccCCCCCCCCcccccCCcccccCCCCCCCCcCccccccCCCcccHHHHHHHHhCChHHHHHHHh-cccc
Q 002757 240 REGRKDEMAVQHSNGSLTNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLG-DYFR 318 (884)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~-~~~~ 318 (884)
-..+.. ... + ..|.|||.|+||||||||+||||.||+.|++||++ .|..
T Consensus 252 ------------------------~~~~n~---sin-k--e~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~ 301 (823)
T COG5560 252 ------------------------VDDHNR---SIN-K--EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEE 301 (823)
T ss_pred ------------------------cchhhh---hHH-h--hccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHh
Confidence 000000 011 1 13999999999999999999999999999999995 5999
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCcChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 002757 319 EINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPY 398 (884)
Q Consensus 319 ~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~ 398 (884)
++|..||+|+.|.+|.+|++|+++++.++..+++|+.||..||.++..|+||.|||+|||++||||+|||+|||+.+|||
T Consensus 302 ~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~Kpy 381 (823)
T COG5560 302 SINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPY 381 (823)
T ss_pred hhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC---ChHHHHHHHHHHhhccCCCccccccceEEEEEEEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEE
Q 002757 399 AEAKDGDGR---SDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVV 475 (884)
Q Consensus 399 ~~~~~~~~~---~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~ 475 (884)
.+.++-... ..+..|++.|..|++||+|+|+|||+|.++||++|+.|+.+|++||||++|+||||.+..|.++|++|
T Consensus 382 tskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~f 461 (823)
T COG5560 382 TSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVF 461 (823)
T ss_pred cCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEE
Confidence 998865433 34568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecceeEEcccCCcc-cccccCCCCcEEEEEecCCC
Q 002757 476 NTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPAD-SISLIRDDDQLVAYRLRKEN 554 (884)
Q Consensus 476 ~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~-~~~~i~~~d~i~~ye~~~~~ 554 (884)
|.+|...| +.+++.+.+++.+|++.+.+..|......+.++++|.++.++.++...+ .+..|.+.|.++.|+ ..
T Consensus 462 p~~g~~~p--l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe---~~ 536 (823)
T COG5560 462 PESGRRQP--LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TN 536 (823)
T ss_pred CCCCCCCc--eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEee---cC
Confidence 99998777 6778889999999999999888887777889999999999999987666 457899999999999 44
Q ss_pred CCCCeEEEEeehhhhhhhcCCcCCCCcccCccE-EEEe-ccccChHHHHHHHHHHcCCcccC-c---cccCCCC---cCC
Q 002757 555 DKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPL-VAKV-SYLAHGLDIRNLYLELLKPFCIP-A---KDTFNNN---VTA 625 (884)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~-~~~~-~~~~~~~~i~~~~~~~~~~~~~~-~---~~~~~~~---~~~ 625 (884)
++...++++|.+.++. +++..+||.|+ ...+ ..+.-..+|.+.+.+++...... . ..++.-. .+.
T Consensus 537 ~ngi~vpvvh~~~~~g------Yks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es 610 (823)
T COG5560 537 DNGIEVPVVHLRIEKG------YKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREES 610 (823)
T ss_pred CCCeEEEEEecccccc------ccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhccc
Confidence 4557899999866542 46788999996 2233 33333344433333332111000 0 0000000 000
Q ss_pred CCch-hhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCccccccccCcccccCCCCCceEEEEEecchh
Q 002757 626 GSTA-IEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKL 704 (884)
Q Consensus 626 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~ 704 (884)
+... .+-.++++. + ..++..++.+ -+......|.|+|.+..
T Consensus 611 ~p~~wl~l~teid~--------------k----------------------ree~veeE~~--~n~nd~vvi~cew~ek~ 652 (823)
T COG5560 611 SPSSWLKLETEIDT--------------K----------------------REEQVEEEGQ--MNFNDAVVISCEWEEKR 652 (823)
T ss_pred Ccchhhhhhhhccc--------------h----------------------hhhhhhhhhc--cCCCcceEEeeeccccc
Confidence 0000 000000000 0 0000001111 12345567889999886
Q ss_pred hh-hhc-cccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCCCCcceeEEEEEeeecCCeEEEEE
Q 002757 705 IE-QYD-TRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHL 782 (884)
Q Consensus 705 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhL 782 (884)
.. .|. ...+ -..+.++ ....|||+|||++|.++|.|+..|.||||.||++++|+|+++||++|.||||||
T Consensus 653 y~~lFsy~~lw----~~~ei~~----~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihL 724 (823)
T COG5560 653 YLSLFSYDPLW----TIREIGA----AERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHL 724 (823)
T ss_pred hhhhhcCCccc----hhHHhhh----ccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeeh
Confidence 65 342 1111 0111111 126899999999999999999999999999999999999999999999999999
Q ss_pred eceeeecccccccceeEecccCCCCccccccccCCCCCceEEEEEEEEeeecCCCCeEEEEEEc-CCCCEEEEcCCccee
Q 002757 783 KRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYP 861 (884)
Q Consensus 783 KRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVinH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~ 861 (884)
|||++.+.+++||++.|.|||.+|||+.|.....+ ....|+||||.||||++||||||||+|| .+++||+|||++|++
T Consensus 725 kRFss~rsfrdKiddlVeyPiddldLs~~~~~~~~-p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsrite 803 (823)
T COG5560 725 KRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDD-PRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITE 803 (823)
T ss_pred hhhhhcccchhhhhhhhccccccccccceEEeecC-cceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccc
Confidence 99999999999999999999999999999887765 4599999999999999999999999999 668999999999999
Q ss_pred cCcccccCCCeEEEEEEEec
Q 002757 862 ISQDKIKTSAAYVLFYRRVV 881 (884)
Q Consensus 862 v~~~~v~s~~AYlLFY~R~~ 881 (884)
+.+++.++++||||||||+.
T Consensus 804 vdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 804 VDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred cCccccccceeEEEEEEecC
Confidence 99999999999999999973
No 2
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-99 Score=913.12 Aligned_cols=820 Identities=34% Similarity=0.516 Sum_probs=639.8
Q ss_pred cccCCCCCCCeEEEEchHHHHHHHHhcCCCCccccccccccCCCCCCCCCCCCCCcccChhhccccccchhcccccCCcc
Q 002757 22 SNNNNNDNDQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENG 101 (884)
Q Consensus 22 ~~~~~~~~g~~~ylIs~~W~~~w~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~l~ 101 (884)
.++..++.|+.+++|..+|+.+|++|++.. ... .. +..+....++|++||.+.+. .+.. ...+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~------~~--~~~~~~~~k~~~~~n~~~~~----~~~~---~~~~~ 66 (842)
T KOG1870|consen 3 ESRRTCKSGKSHGLILWRCLEQWQSYVGLE-SYH------EI--STIHSQAPKHGLTDNLTFLR----CDAC---DKTLR 66 (842)
T ss_pred ccccccccccccchhhhhhhhhccccccce-eee------cc--ccccccccccccccCccchh----Hhhh---hhHHH
Confidence 356678899999999999999999999961 111 00 11123456899999999987 1211 12789
Q ss_pred cCCCCCCCEEEeCHHHHHHHHHHc-CCCCcceEEeecCCCc--cCCcccccceEEEEEEeccCCeeEEEEcccccHHHHH
Q 002757 102 EVGVSGRDYALVPGEMWLQALKWH-SDTKVAAKNRKSFLAS--EDDMADVYPLQLRLSVMRETNSLGVKISKKDNAVELF 178 (884)
Q Consensus 102 ~~l~e~~dy~~vp~~~w~~l~~wY-G~~~~i~R~Vi~~~~~--~~~v~EvyP~~l~l~~~~~~~~~~~~~Sk~~ti~~l~ 178 (884)
..+.++.||.++|+++|+.+.+|| .+++++.|.|+..+.. .+.+ |+||..+.++...+.....+..+..+|+.++.
T Consensus 67 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~r~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 145 (842)
T KOG1870|consen 67 VSLLEGLDYTISPRSVQKLLVEWFKSGGAAILRAVFDEGEIERDDFV-ELYPRGLTLLKNSGNSRTSLALQADSTCPPLT 145 (842)
T ss_pred hhhccccccccCCHHHHhhccccccCCCccchhhhhcccccccCCcc-cccchhhhhccCCCCccceeccccccCccHHH
Confidence 999999999999999999999999 5779999999988754 4777 99999999998777554458999999999999
Q ss_pred HHHHhHcCCCCccEEEEEecCCcceeeccCCC-ccchhhccCCCceEEEEEE-ecCccCcccccccccccccccccCCCC
Q 002757 179 KRACKIFSIESELLHIWDFSGQTTLYFLNDKN-KFSKDCLRLSDHEILLELQ-IYGLSDSLKCREGRKDEMAVQHSNGSL 256 (884)
Q Consensus 179 ~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~-~tl~~~~l~~~q~illE~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~ 256 (884)
+..+..+.++.+..|+|..+......++.... .++..+.+..++++++|+. .++.|+++............ ....
T Consensus 146 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 222 (842)
T KOG1870|consen 146 SYFLESGGLPRTKFAIWASYNEKYLSLWYKSDPGKLVPTVLFQGRKMVLEVFRKFASQPSDMTLRCWMDWLSE---RDPD 222 (842)
T ss_pred HHHHHhcCCCcccchhhhhhhHhhhcccccccccccccccccccceEEeeeccccccchhhhchhhccccccc---cccc
Confidence 99999999999999999998887666666555 6788889999999999999 47788876432110000000 0000
Q ss_pred CCCCcccccCCcccccCCCCCCCCcCccccccCCCcccHHHHHHHHhCChHHHHHHHhccc-cccCCCCCCCCchHHHHH
Q 002757 257 TNGSFGIVRNSSITFSGRSGEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYF-REINHDNPLGMDGEIALA 335 (884)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~-~~~~~~n~~~~~~~l~~~ 335 (884)
.+++ .... .............+|.+||.|+||||||||.+|||.+++++++||+.... .++|..|++++.+.++.+
T Consensus 223 ~~~~-~~s~--~~~~~~~~~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~ 299 (842)
T KOG1870|consen 223 ASGT-KETR--VDFPSEEISSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASS 299 (842)
T ss_pred cCCC-cccc--cccccccccCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechh
Confidence 0000 0000 00111222345667999999999999999999999999999999996544 459999999999999999
Q ss_pred HHHHHHHHcCCCCCCcChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHH
Q 002757 336 FGDLLRKLWAPGAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADE 415 (884)
Q Consensus 336 l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~ 415 (884)
+..++.++|++....++|..++..++.++++|.|+.|||+||||.||||+||++++++..+||++.++.+++++.+.+.+
T Consensus 300 ~~~l~~~~~s~~~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~ 379 (842)
T KOG1870|consen 300 FADLIKQLWSGNKSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAE 379 (842)
T ss_pred hhhHHHHhccCCccccCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHH
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCccccccceEEEEEEEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCC
Q 002757 416 YWQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGK 495 (884)
Q Consensus 416 ~w~~~~~~~~sii~~lF~G~~~s~i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~ 495 (884)
.|..|..++.|+|+++|.|++++++.|+.|++++++||||.+|+||+|....+.+.+++++.++...|.++.+.++++++
T Consensus 380 ~~~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 459 (842)
T KOG1870|consen 380 VWDYHLKRNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGR 459 (842)
T ss_pred HHHhhhhhccceeeeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCC-eEEEEeehhhhh--hh
Q 002757 496 FEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDP-LVVFMHQQLEEQ--YI 572 (884)
Q Consensus 496 ~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~-~~~~~~~~~~~~--~~ 572 (884)
+.++.++|++.+++. ...+..++++.+++++++..+...+..|...+.+++|+++....+.. ++.+......+. ..
T Consensus 460 ~~~l~~~l~~~~~~~-~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 538 (842)
T KOG1870|consen 460 IRDLLEYLSRTVGLL-SWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSK 538 (842)
T ss_pred HHHHHHHHHHHhccc-hhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeecccccccc
Confidence 999999999999999 89999999999999999997667788999999999999996333333 222222222211 11
Q ss_pred cCCcCCCCcccCccEEEEe-c-cccChHHHHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccC-CCCCCC
Q 002757 573 HGKLTSCPNALGIPLVAKV-S-YLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVT-GGVATP 649 (884)
Q Consensus 573 ~~~~~~~~~~~g~P~~~~~-~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 649 (884)
..........||.|+++.+ . ...+..++...+..+.+++..........+.... ......+........ ..+...
T Consensus 539 ~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~--~~~~~~e~~~~s~~~~~~~~~~ 616 (842)
T KOG1870|consen 539 GIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQ--SLKEVSEQSAESSSSVSRDPSE 616 (842)
T ss_pred CcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCcc--cccccccccccccccccCCChh
Confidence 2234567789999999999 3 5678889999999888877632100000000000 000000000000000 000000
Q ss_pred CCCCC----CCCCC--CCceeEEEecCCCCccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccC
Q 002757 650 SSVKE----VEPPS--DAELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSG 723 (884)
Q Consensus 650 ~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~ 723 (884)
.++.. -+... ...+.+.-... ...... ........++++|.+.....+........++....+
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~ 685 (842)
T KOG1870|consen 617 DDNSDQDLSLECLSEESALRFFQSLES---------RNKSDS--EFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRG 685 (842)
T ss_pred HhccccccchhhccCcccccccccccc---------cccccc--cccCCCceeecccChhhccccccccccccccccccc
Confidence 00000 00000 00000000000 000000 011222338999999988877655555555555554
Q ss_pred CCCCCCC-CCCCHHHHHHHhcCccccCCCCcccCCCCCCcceeEEEEEeeecCCeEEEEEeceeeecccccccceeEecc
Q 002757 724 FLPKRPQ-ESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFP 802 (884)
Q Consensus 724 ~~~~~~~-~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FP 802 (884)
....... ..++|++||+.|+++|.|+.+++|||++|++|++|+|+++||+||+|||||||||+|.+++++|+++.|+||
T Consensus 686 ~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fP 765 (842)
T KOG1870|consen 686 ASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFP 765 (842)
T ss_pred cccccCCCCcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCC
Confidence 4333222 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccccCCCCCceEEEEEEEEeeecCCCCeEEEEEEc-CCCCEEEEcCCcceecCcccccCCCeEEEEEEEec
Q 002757 803 VDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVV 881 (884)
Q Consensus 803 i~~LDls~~v~~~~~~~~~~YdL~aVinH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~s~~AYlLFY~R~~ 881 (884)
+..||+++|+..++. .+|+||||+||||+|++||||||+|+ .+++||+|||++|+++++++|++++||+|||||++
T Consensus 766 i~~ld~s~~~~~~~~---~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 766 LGSLDLSEFVVNKEQ---VLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred CcCCCcchhhccCcc---ceeeeeeeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 999999999998754 99999999999999999999999999 78999999999999999999999999999999975
No 3
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-64 Score=512.57 Aligned_cols=333 Identities=35% Similarity=0.562 Sum_probs=275.9
Q ss_pred cCccccccCCCcccHHHHHHHHhCChHHHHHHH-hccccccCCCCCCCCchH-HHHHHHHHHHHHcCCCCCCcChHHHHH
Q 002757 281 LGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFL-GDYFREINHDNPLGMDGE-IALAFGDLLRKLWAPGAAPVSPRTFKS 358 (884)
Q Consensus 281 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l-~~~~~~~~~~n~~~~~~~-l~~~l~~L~~~l~~~~~~~i~p~~~~~ 358 (884)
.-+.||.|+|||||||++||||+.+..|...|+ +.|.+.+|.++|.|..|. .+..|..|...+-..+..+|+|+.|+.
T Consensus 69 ~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~~ 148 (415)
T COG5533 69 LPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFID 148 (415)
T ss_pred cCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHHH
Confidence 357999999999999999999999999999777 457889999999999995 455667777777666678899999999
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCC-CCccccCCCCCCh-----HHHHHHHHHHhhccCCCcccccc
Q 002757 359 KLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCK-PYAEAKDGDGRSD-----EDIADEYWQNHLARNDSIIVDLC 432 (884)
Q Consensus 359 ~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~-~~~~~~~~~~~~~-----~~~a~~~w~~~~~~~~sii~~lF 432 (884)
.++..++.|++.+||||||||.|+||.||||+|.-..+ |..+..|...+.. ...+.-.|+.|+..|.|+|.++|
T Consensus 149 i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~f 228 (415)
T COG5533 149 ILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKTF 228 (415)
T ss_pred HHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHHH
Confidence 99999999999999999999999999999999976543 4444443322111 12233579999999999999999
Q ss_pred ceEEEEEEEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 002757 433 QGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVN 512 (884)
Q Consensus 433 ~G~~~s~i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~ 512 (884)
.||++++++|..|++.|+|+.+|..|.+|+|..
T Consensus 229 ~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v----------------------------------------------- 261 (415)
T COG5533 229 FGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEV----------------------------------------------- 261 (415)
T ss_pred hhhhhhhhhhhhcCCceeEEeccceeeeccchh-----------------------------------------------
Confidence 999999999999999999999999999998731
Q ss_pred ceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEec
Q 002757 513 ETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVS 592 (884)
Q Consensus 513 ~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~ 592 (884)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccChHHHHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCC
Q 002757 593 YLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKG 672 (884)
Q Consensus 593 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (884)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCC
Q 002757 673 IVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPED 752 (884)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d 752 (884)
..+.|.|||+.|+++|.|+++|
T Consensus 262 ----------------------------------------------------------~~~~l~eC~~~f~~~e~L~g~d 283 (415)
T COG5533 262 ----------------------------------------------------------VQLGLQECIDRFYEEEKLEGKD 283 (415)
T ss_pred ----------------------------------------------------------eeecHHHHHHHhhhHHhhcCcc
Confidence 1235899999999999999999
Q ss_pred cccCCCCCCcceeEEEEEeeecCCeEEEEEeceeeecccccccceeE----ecccCCCCccccccccCCCCCceEEEEEE
Q 002757 753 MWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYV----DFPVDNLDLSTHVAHLNDKLSNRYMLYAV 828 (884)
Q Consensus 753 ~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V----~FPi~~LDls~~v~~~~~~~~~~YdL~aV 828 (884)
.|.||+|++++.++|++.|.++|++|||||+||.-.-..+.|||+.- +||.|-++ .+-.-+.-+-.+..|+|+||
T Consensus 284 ~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v-~~~f~~~~~~~P~~Y~L~gv 362 (415)
T COG5533 284 AWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNV-TLLFNNGIGYIPRKYSLLGV 362 (415)
T ss_pred cccCchhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecc-cccccCCCCCCccceeEEEE
Confidence 99999999999999999999999999999999985555555666542 34432211 11111222236789999999
Q ss_pred EEeeecCCCCeEEEEEEcCCCCEEEEcCCcceecCc-ccccCCCeEEEEEEEe
Q 002757 829 SNHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPISQ-DKIKTSAAYVLFYRRV 880 (884)
Q Consensus 829 inH~G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~v~~-~~v~s~~AYlLFY~R~ 880 (884)
++|+|++.||||+++|+.. +.|+.||||.|++++- -+....+||||||+|.
T Consensus 363 ~Ch~G~L~gGHY~s~v~~~-~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 363 VCHNGTLNGGHYFSEVKRS-GTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred EeecceecCceeEEeeeec-CceEEechhheeeccceecccCCcceEEEEEec
Confidence 9999999999999999975 8999999999999983 4556679999999996
No 4
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-64 Score=555.78 Aligned_cols=305 Identities=35% Similarity=0.585 Sum_probs=272.3
Q ss_pred CcCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCcChHHHHHH
Q 002757 280 CLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSK 359 (884)
Q Consensus 280 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 359 (884)
..-.+||.|+|||||+||+||||.++|||.+||++..+...+. ....++.++|+..+.........+++|..|...
T Consensus 105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~----~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~ 180 (545)
T KOG1865|consen 105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH----RAKFCMLCTFQAHITRALHNPGHPISPSQILSN 180 (545)
T ss_pred ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc----ccCeeeehHHHHHHHHHhcCCCCccChHHHHHh
Confidence 3456999999999999999999999999999999866654443 235788999999998887777789999999999
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEEEE
Q 002757 360 LARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKST 439 (884)
Q Consensus 360 l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~ 439 (884)
|..++..|..|.|+||||||+++||.|+.-+-....+ . ....+..++|.++|+|.++++
T Consensus 181 L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~-----~----------------~~~sq~ttlv~~iFGG~LrS~ 239 (545)
T KOG1865|consen 181 LRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQ-----V----------------DPRSQDTTLVHQIFGGYLRSQ 239 (545)
T ss_pred hhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCcc-----C----------------Ccccccceehhhhhccchhhc
Confidence 9999999999999999999999999999765311110 0 112345688999999999999
Q ss_pred EEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEE
Q 002757 440 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 519 (884)
Q Consensus 440 i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 519 (884)
++|..|+++|.+||++++|+|.|-.
T Consensus 240 vkC~~C~~vS~tyE~~~dltvei~d------------------------------------------------------- 264 (545)
T KOG1865|consen 240 IKCLHCKGVSDTYEPYLDLTLEIQD------------------------------------------------------- 264 (545)
T ss_pred eecccCCCcccccccccceEEEecc-------------------------------------------------------
Confidence 9999999999999999999997530
Q ss_pred EecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHH
Q 002757 520 IYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLD 599 (884)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~ 599 (884)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccc
Q 002757 600 IRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKI 679 (884)
Q Consensus 600 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (884)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCC
Q 002757 680 VMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGC 759 (884)
Q Consensus 680 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~C 759 (884)
.-+|.+||+.|+++|.|+|+|+|.|.+|
T Consensus 265 ----------------------------------------------------~~sl~~AL~qFt~~E~L~gen~Y~C~~C 292 (545)
T KOG1865|consen 265 ----------------------------------------------------ASSLQQALEQFTKPEKLDGENAYHCGRC 292 (545)
T ss_pred ----------------------------------------------------chhHHHHHHHhhhHHhhCCccccccchh
Confidence 1279999999999999999999999999
Q ss_pred CCcceeEEEEEeeecCCeEEEEEeceeeecccccccceeEecccCCCCccccccccCCCCCceEEEEEEEEeee-cCCCC
Q 002757 760 KKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYG-SMGGG 838 (884)
Q Consensus 760 k~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVinH~G-~l~gG 838 (884)
|+++.|.|++.|.++|.||+||||||+. .+..||.+.|.|| |.|||.|||..+++ .+.+|.||||++|.| ....|
T Consensus 293 k~~v~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fP-E~LDl~PyMS~~~e-~s~~Y~LYavlVH~g~~~~~G 368 (545)
T KOG1865|consen 293 KQKVPASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFP-ETLDLQPYMSQPNE-GSTVYKLYAVLVHLGTSCHSG 368 (545)
T ss_pred hhhCcccceeeeecCCceEEEeeehhcc--CcccccccccCCc-ccccccccccCCCC-CCceEEEEEEEEeccccccCC
Confidence 9999999999999999999999999997 6678999999999 79999999996655 899999999999999 89999
Q ss_pred eEEEEEEcCCCCEEEEcCCcceecCcccccCCCeEEEEEEEe
Q 002757 839 HYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRV 880 (884)
Q Consensus 839 HYtAy~k~~~~~Wy~fnDs~Vs~v~~~~v~s~~AYlLFY~R~ 880 (884)
||++|||...|+||.||||.|+.++.+.|++..||||||.|.
T Consensus 369 HY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 369 HYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred ceEEEEEcCCCceEEccCceeeeccccceecccceEEEEEee
Confidence 999999997799999999999999999999999999999996
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.9e-63 Score=540.99 Aligned_cols=287 Identities=31% Similarity=0.542 Sum_probs=251.0
Q ss_pred ccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCC--CCcChHHHHHHHhh
Q 002757 285 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGA--APVSPRTFKSKLAR 362 (884)
Q Consensus 285 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~--~~i~p~~~~~~l~~ 362 (884)
||.|+||||||||+||||+| ..++.+|+.||.+||.+.. .+++|..|+.+++.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHh
Confidence 99999999999999999987 4688899999999997643 57999999999999
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEEEEEEc
Q 002757 363 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVC 442 (884)
Q Consensus 363 ~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C 442 (884)
..|.|.+++||||||||.+|||.||+++++..++...+. ...+........++|.++|+|++.++++|
T Consensus 56 ~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~i~~~F~G~~~~~~~C 123 (300)
T cd02663 56 ENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANR------------KLNNNNNAEPQPTWVHEIFQGILTNETRC 123 (300)
T ss_pred hcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccc------------cccccccCCcCCCChhhhCceEEEeeEEe
Confidence 999999999999999999999999999987654332110 01122223456788999999999999999
Q ss_pred CCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEec
Q 002757 443 PVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYN 522 (884)
Q Consensus 443 ~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 522 (884)
..|++++.++|+|++|+|+||.
T Consensus 124 ~~C~~~s~~~e~f~~Lsl~i~~---------------------------------------------------------- 145 (300)
T cd02663 124 LTCETVSSRDETFLDLSIDVEQ---------------------------------------------------------- 145 (300)
T ss_pred CCCCCCccccceeEEeccCCCC----------------------------------------------------------
Confidence 9999999999999999999872
Q ss_pred ceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHHH
Q 002757 523 HQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRN 602 (884)
Q Consensus 523 ~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~i~~ 602 (884)
T Consensus 146 -------------------------------------------------------------------------------- 145 (300)
T cd02663 146 -------------------------------------------------------------------------------- 145 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCccccccccC
Q 002757 603 LYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMN 682 (884)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (884)
T Consensus 146 -------------------------------------------------------------------------------- 145 (300)
T cd02663 146 -------------------------------------------------------------------------------- 145 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCCCCc
Q 002757 683 EPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKH 762 (884)
Q Consensus 683 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~ 762 (884)
..+|++||+.|+++|.|.+++.|+|++|+++
T Consensus 146 -------------------------------------------------~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~ 176 (300)
T cd02663 146 -------------------------------------------------NTSITSCLRQFSATETLCGRNKFYCDECCSL 176 (300)
T ss_pred -------------------------------------------------cCCHHHHHHHhhcccccCCCCcEECCCCCCc
Confidence 1368999999999999999999999999999
Q ss_pred ceeEEEEEeeecCCeEEEEEeceeeecc--cccccceeEecccCCCCccccccccCCCCCceEEEEEEEEeee-cCCCCe
Q 002757 763 CQASKKLDLWRLPEILVIHLKRFSYSRF--SKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYG-SMGGGH 839 (884)
Q Consensus 763 ~~A~Kk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVinH~G-~l~gGH 839 (884)
+.|+|++.|+++|+||+||||||.++.. ...|+++.|.||+ .|||.++...... ....|+|+|||+|.| ++.+||
T Consensus 177 ~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~~~-~~~~Y~L~~vi~H~G~~~~~GH 254 (300)
T cd02663 177 QEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPL-ELRLFNTTDDAEN-PDRLYELVAVVVHIGGGPNHGH 254 (300)
T ss_pred eeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCc-EEeccccccccCC-CCeEEEEEEEEEEecCCCCCCc
Confidence 9999999999999999999999999854 3679999999995 8999887543333 568999999999999 599999
Q ss_pred EEEEEEcCCCCEEEEcCCcceecCccccc--------CCCeEEEEEE
Q 002757 840 YTAFVHHGGGQWYDFDDSHVYPISQDKIK--------TSAAYVLFYR 878 (884)
Q Consensus 840 YtAy~k~~~~~Wy~fnDs~Vs~v~~~~v~--------s~~AYlLFY~ 878 (884)
||||+|. +++||+|||+.|+++++++|. +..||||||+
T Consensus 255 Y~a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 255 YVSIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred eEEEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 9999998 789999999999999988885 6899999996
No 6
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.7e-60 Score=527.30 Aligned_cols=318 Identities=32% Similarity=0.598 Sum_probs=266.6
Q ss_pred cccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHc-CCCCCCcChHHHHHHHhh
Q 002757 284 TGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLW-APGAAPVSPRTFKSKLAR 362 (884)
Q Consensus 284 ~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~-~~~~~~i~p~~~~~~l~~ 362 (884)
+||.|+||||||||+||||+|+|+|+++|++..+..... ......+++++|+.|+..|+ .+....++|..|+.++..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~--~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~ 78 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCL--SCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWK 78 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccc--cCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Confidence 599999999999999999999999999998643221000 11224679999999999994 445678999999999999
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEEEEEEc
Q 002757 363 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVC 442 (884)
Q Consensus 363 ~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C 442 (884)
..+.|.++.||||||||.+|||.||+++......+. ......++|.++|+|++.++++|
T Consensus 79 ~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~---------------------~~~~~~~~i~~~F~g~~~~~~~C 137 (328)
T cd02660 79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEAN---------------------DESHCNCIIHQTFSGSLQSSVTC 137 (328)
T ss_pred hchhhcccccccHHHHHHHHHHHHHHHhhccccccc---------------------ccccCCceeEEecccEEEeeeEc
Confidence 899999999999999999999999999876433210 01234578999999999999999
Q ss_pred CCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEec
Q 002757 443 PVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYN 522 (884)
Q Consensus 443 ~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 522 (884)
..|++.+.++|+|+.|+||||.......
T Consensus 138 ~~C~~~s~~~e~f~~lsl~i~~~~~~~~---------------------------------------------------- 165 (328)
T cd02660 138 QRCGGVSTTVDPFLDLSLDIPNKSTPSW---------------------------------------------------- 165 (328)
T ss_pred CCCCCccceecccceeeeeccccccccc----------------------------------------------------
Confidence 9999999999999999999985321000
Q ss_pred ceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHHH
Q 002757 523 HQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRN 602 (884)
Q Consensus 523 ~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~i~~ 602 (884)
+ .
T Consensus 166 ---------~---------------------------------------------~------------------------ 167 (328)
T cd02660 166 ---------A---------------------------------------------L------------------------ 167 (328)
T ss_pred ---------c---------------------------------------------c------------------------
Confidence 0 0
Q ss_pred HHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCccccccccC
Q 002757 603 LYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMN 682 (884)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (884)
.
T Consensus 168 ----------------~--------------------------------------------------------------- 168 (328)
T cd02660 168 ----------------G--------------------------------------------------------------- 168 (328)
T ss_pred ----------------c---------------------------------------------------------------
Confidence 0
Q ss_pred cccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCCCCc
Q 002757 683 EPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKH 762 (884)
Q Consensus 683 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~ 762 (884)
.......++|++||+.|+++|.+++.+ |+|++|+++
T Consensus 169 -------------------------------------------~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~ 204 (328)
T cd02660 169 -------------------------------------------ESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGST 204 (328)
T ss_pred -------------------------------------------ccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCc
Confidence 000003469999999999999998877 999999999
Q ss_pred ceeEEEEEeeecCCeEEEEEeceeeec-ccccccceeEecccCCCCccccccc--------cCCCCCceEEEEEEEEeee
Q 002757 763 CQASKKLDLWRLPEILVIHLKRFSYSR-FSKNKLETYVDFPVDNLDLSTHVAH--------LNDKLSNRYMLYAVSNHYG 833 (884)
Q Consensus 763 ~~A~Kk~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls~~v~~--------~~~~~~~~YdL~aVinH~G 833 (884)
+.|.|++.|.++|+||+||||||.++. +...|+++.|.||. .|||++|+.. ........|+|+|||+|.|
T Consensus 205 ~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G 283 (328)
T cd02660 205 QEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPL-ELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKG 283 (328)
T ss_pred cceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCC-EechhhhcccccccccccccCCCCceEEEEEEEEeec
Confidence 999999999999999999999999986 56689999999995 8999999984 2233678999999999999
Q ss_pred cCCCCeEEEEEEcCCCCEEEEcCCcceecCcccccCCCeEEEEEE
Q 002757 834 SMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYR 878 (884)
Q Consensus 834 ~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~v~~~~v~s~~AYlLFY~ 878 (884)
+.++||||||+|..+++||+|||+.|+++++++|...+||||||.
T Consensus 284 ~~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 284 TLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred cCCCCcEEEEEECCCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 999999999999977999999999999999999999999999993
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.7e-60 Score=523.00 Aligned_cols=299 Identities=29% Similarity=0.468 Sum_probs=243.4
Q ss_pred CCCCcCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCcChHHH
Q 002757 277 EAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTF 356 (884)
Q Consensus 277 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~ 356 (884)
+....|++||.|+||||||||+||||+|+|+|++++.+.. +.......+ ..+..++..++......++|..|
T Consensus 18 ~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~-------~~~~~~~~~-q~~~~~l~~~~~~~~~~~~P~~~ 89 (332)
T cd02671 18 RENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLV-------SLISSVEQL-QSSFLLNPEKYNDELANQAPRRL 89 (332)
T ss_pred cccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhh-------cccCcHHHH-HHHHHHHHHHHhhcccccCHHHH
Confidence 4456799999999999999999999999999999886421 111111222 22223455566555566789999
Q ss_pred HHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEE
Q 002757 357 KSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQY 436 (884)
Q Consensus 357 ~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~ 436 (884)
+.++++.+|.|.++.||||||||.+|||.||+ +|.++|+|++
T Consensus 90 ~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------------------------~i~~~F~g~~ 131 (332)
T cd02671 90 LNALREVNPMYEGYLQHDAQEVLQCILGNIQE--------------------------------------LVEKDFQGQL 131 (332)
T ss_pred HHHHHHhccccCCccccCHHHHHHHHHHHHHH--------------------------------------HHHhhhceEE
Confidence 99999999999999999999999999999983 2677999999
Q ss_pred EEEEEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEE
Q 002757 437 KSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLL 516 (884)
Q Consensus 437 ~s~i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 516 (884)
.++++|..|++.+.++|+|++|+||||........
T Consensus 132 ~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~--------------------------------------------- 166 (332)
T cd02671 132 VLRTRCLECETFTERREDFQDISVPVQESELSKSE--------------------------------------------- 166 (332)
T ss_pred EEEEEeCCCCCeeceecccEEEEEEeCCCcccccc---------------------------------------------
Confidence 99999999999999999999999999853210000
Q ss_pred EEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccC
Q 002757 517 VAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAH 596 (884)
Q Consensus 517 ~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~ 596 (884)
..
T Consensus 167 ---------------~~--------------------------------------------------------------- 168 (332)
T cd02671 167 ---------------ES--------------------------------------------------------------- 168 (332)
T ss_pred ---------------cc---------------------------------------------------------------
Confidence 00
Q ss_pred hHHHHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCccc
Q 002757 597 GLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKN 676 (884)
Q Consensus 597 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (884)
. .
T Consensus 169 ----------------------~-----~--------------------------------------------------- 170 (332)
T cd02671 169 ----------------------S-----E--------------------------------------------------- 170 (332)
T ss_pred ----------------------c-----c---------------------------------------------------
Confidence 0 0
Q ss_pred cccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccC
Q 002757 677 SKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYC 756 (884)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C 756 (884)
+.. .|. ....+|++||+.|+++|.|.++|.|+|
T Consensus 171 --~~~----------------------------------~~~-----------~~~~tL~~~L~~f~~~E~l~g~n~y~C 203 (332)
T cd02671 171 --ISP----------------------------------DPK-----------TEMKTLKWAISQFASVERIVGEDKYFC 203 (332)
T ss_pred --ccc----------------------------------ccc-----------cccCCHHHHHHHhCCcceecCCCCeeC
Confidence 000 000 023589999999999999999999999
Q ss_pred CCCCCcceeEEEEEeeecCCeEEEEEeceeeec------ccccccceeEecccCCCCccccccccCCCCCceEEEEEEEE
Q 002757 757 PGCKKHCQASKKLDLWRLPEILVIHLKRFSYSR------FSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSN 830 (884)
Q Consensus 757 ~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~------~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVin 830 (884)
++|++.+.|+|++.|+++|+||+||||||.++. ....|+++.|.||+ .|||.+|.... ....|+|+|||+
T Consensus 204 ~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~---~~~~Y~L~~VI~ 279 (332)
T cd02671 204 ENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPL-KLSLEEWSTKP---KNDVYRLFAVVM 279 (332)
T ss_pred CCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCcc-ccccccccCCC---CCCeEEEEEEEE
Confidence 999999999999999999999999999999864 24679999999996 89999886543 568999999999
Q ss_pred eee-cCCCCeEEEEEEcCCCCEEEEcCCcceecCccccc---------CCCeEEEEEE
Q 002757 831 HYG-SMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIK---------TSAAYVLFYR 878 (884)
Q Consensus 831 H~G-~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~v~~~~v~---------s~~AYlLFY~ 878 (884)
|.| ++++|||+||+| ||+|||+.|++++++++. +..||||||+
T Consensus 280 H~G~~~~~GHY~a~vr-----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 280 HSGATISSGHYTAYVR-----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred EcCCCCCCCeEEEEEE-----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 999 689999999999 999999999999976664 4699999995
No 8
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.7e-60 Score=524.67 Aligned_cols=294 Identities=29% Similarity=0.482 Sum_probs=253.4
Q ss_pred ccccCCCcccHHHHHHHHhCChHHHHHHHhcccccc-CCCC----CCCCchHHHHHHHHHHHHHcCCCCCCcChHHHHHH
Q 002757 285 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREI-NHDN----PLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSK 359 (884)
Q Consensus 285 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~-~~~n----~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 359 (884)
||.|+||||||||+||||+|+|+|++++++...... ...+ .......++.+|+.||.+||.+...+++|..|..+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 899999999999999999999999999985422211 1000 01123579999999999999988899999999998
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEEEE
Q 002757 360 LARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKST 439 (884)
Q Consensus 360 l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~ 439 (884)
++ |..++||||||||.+|||.||+++..... ....++|.++|.|++.++
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~--------------------------~~~~~~i~~~F~G~~~~~ 129 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN--------------------------PDLKNIVQDLFRGEYSYV 129 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhccC--------------------------CcccchhhhhcceEEEEE
Confidence 83 67889999999999999999998864210 112467899999999999
Q ss_pred EEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEE
Q 002757 440 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 519 (884)
Q Consensus 440 i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 519 (884)
++|..|++.+.+.|+|+.|+|+||.
T Consensus 130 ~~C~~C~~~s~~~e~f~~l~l~i~~------------------------------------------------------- 154 (324)
T cd02668 130 TQCSKCGRESSLPSKFYELELQLKG------------------------------------------------------- 154 (324)
T ss_pred EEeCCCCCccccccccEEEEEEecc-------------------------------------------------------
Confidence 9999999999999999999999862
Q ss_pred EecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHH
Q 002757 520 IYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLD 599 (884)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~ 599 (884)
T Consensus 155 -------------------------------------------------------------------------------- 154 (324)
T cd02668 155 -------------------------------------------------------------------------------- 154 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccc
Q 002757 600 IRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKI 679 (884)
Q Consensus 600 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (884)
T Consensus 155 -------------------------------------------------------------------------------- 154 (324)
T cd02668 155 -------------------------------------------------------------------------------- 154 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCC
Q 002757 680 VMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGC 759 (884)
Q Consensus 680 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~C 759 (884)
..+|++||+.|+++|.|.+++.|+|++|
T Consensus 155 ----------------------------------------------------~~sl~~~L~~~~~~e~l~g~~~~~C~~C 182 (324)
T cd02668 155 ----------------------------------------------------HKTLEECIDEFLKEEQLTGDNQYFCESC 182 (324)
T ss_pred ----------------------------------------------------cCCHHHHHHHhhCceecCCCccccCCCC
Confidence 1268999999999999999999999999
Q ss_pred CCcceeEEEEEeeecCCeEEEEEeceeeec--ccccccceeEecccCCCCccccccccCCCCCceEEEEEEEEeee-cCC
Q 002757 760 KKHCQASKKLDLWRLPEILVIHLKRFSYSR--FSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYG-SMG 836 (884)
Q Consensus 760 k~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVinH~G-~l~ 836 (884)
++++.|+|+..|.++|+||+||||||.|+. +.+.|+++.|.|| +.|||++|+..... .+..|+|+|||+|.| ++.
T Consensus 183 ~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~-~~~~Y~L~~vI~H~G~~~~ 260 (324)
T cd02668 183 NSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFP-EILDMGEYLAESDE-GSYVYELSGVLIHQGVSAY 260 (324)
T ss_pred CceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECC-CeEechhhcccccC-CCcEEEEEEEEEEcCCCCC
Confidence 999999999999999999999999999974 4578999999999 69999999875433 678999999999999 689
Q ss_pred CCeEEEEEEc-CCCCEEEEcCCcceecCcccc---------------------cCCCeEEEEEE
Q 002757 837 GGHYTAFVHH-GGGQWYDFDDSHVYPISQDKI---------------------KTSAAYVLFYR 878 (884)
Q Consensus 837 gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v---------------------~s~~AYlLFY~ 878 (884)
+|||+||+|+ .+++||.|||+.|++++.+.| .+..|||||||
T Consensus 261 ~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 261 SGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred CEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 9999999998 458999999999999986655 36789999996
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.6e-60 Score=511.39 Aligned_cols=252 Identities=42% Similarity=0.746 Sum_probs=229.5
Q ss_pred ccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCcChHHHHHHHhhhC
Q 002757 285 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFA 364 (884)
Q Consensus 285 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~ 364 (884)
||.|+||||||||+||||+|+|+|+++|++ +|..|+..+....
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~~~ 43 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCRKA 43 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHHhh
Confidence 999999999999999999999999999974 8889999999989
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEEEEEEcCC
Q 002757 365 PQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCPV 444 (884)
Q Consensus 365 ~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C~~ 444 (884)
|.|.+++||||||||.+|||.|| ++|.++|.|++.++++|..
T Consensus 44 ~~f~~~~QqDA~Efl~~lld~l~--------------------------------------~~i~~~F~G~~~~~i~C~~ 85 (279)
T cd02667 44 PQFKGYQQQDSHELLRYLLDGLR--------------------------------------TFIDSIFGGELTSTIMCES 85 (279)
T ss_pred HhhcCCchhhHHHHHHHHHHHHH--------------------------------------HhhhhhcceEEEEEEEcCC
Confidence 99999999999999999999998 2377899999999999999
Q ss_pred CCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecce
Q 002757 445 CKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQ 524 (884)
Q Consensus 445 C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~ 524 (884)
|++.+.+.|+|+.|+||+|...
T Consensus 86 C~~~s~~~E~f~~L~Lp~~~~~---------------------------------------------------------- 107 (279)
T cd02667 86 CGTVSLVYEPFLDLSLPRSDEI---------------------------------------------------------- 107 (279)
T ss_pred CCCEeCccccceEEecCCCccc----------------------------------------------------------
Confidence 9999999999999998865210
Q ss_pred eEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHHHHH
Q 002757 525 IIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRNLY 604 (884)
Q Consensus 525 ~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~i~~~~ 604 (884)
T Consensus 108 -------------------------------------------------------------------------------- 107 (279)
T cd02667 108 -------------------------------------------------------------------------------- 107 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCccccccccCcc
Q 002757 605 LELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMNEP 684 (884)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (884)
T Consensus 108 -------------------------------------------------------------------------------- 107 (279)
T cd02667 108 -------------------------------------------------------------------------------- 107 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCCCCcce
Q 002757 685 IAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQ 764 (884)
Q Consensus 685 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~ 764 (884)
...++|++||+.|+++|.|.+++.|.|++|++
T Consensus 108 ---------------------------------------------~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~--- 139 (279)
T cd02667 108 ---------------------------------------------KSECSIESCLKQFTEVEILEGNNKFACENCTK--- 139 (279)
T ss_pred ---------------------------------------------CCCCCHHHHHHhhcCeeEecCCCcccCCccCc---
Confidence 01358999999999999999999999999997
Q ss_pred eEEEEEeeecCCeEEEEEeceeeecc-cccccceeEecccCCCCcccccccc----CCCCCceEEEEEEEEeeecCCCCe
Q 002757 765 ASKKLDLWRLPEILVIHLKRFSYSRF-SKNKLETYVDFPVDNLDLSTHVAHL----NDKLSNRYMLYAVSNHYGSMGGGH 839 (884)
Q Consensus 765 A~Kk~~i~~lP~iLiIhLKRF~~~~~-~~~Ki~~~V~FPi~~LDls~~v~~~----~~~~~~~YdL~aVinH~G~l~gGH 839 (884)
|+|+..|+++|+||+||||||.++.. ...|+++.|+|| +.|||++|+... .......|+|+|||+|.|+..+||
T Consensus 140 a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GH 218 (279)
T cd02667 140 AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGH 218 (279)
T ss_pred eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCC-CccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCE
Confidence 99999999999999999999999854 678999999999 699999999862 123578999999999999889999
Q ss_pred EEEEEEcC----------------------CCCEEEEcCCcceecCcccccCCCeEEEEEE
Q 002757 840 YTAFVHHG----------------------GGQWYDFDDSHVYPISQDKIKTSAAYVLFYR 878 (884)
Q Consensus 840 YtAy~k~~----------------------~~~Wy~fnDs~Vs~v~~~~v~s~~AYlLFY~ 878 (884)
|+||+|.. +++||+|||+.|+++++++|.+.+|||||||
T Consensus 219 Y~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 219 YVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred eEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 99999973 6899999999999999999999999999996
No 10
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-59 Score=539.54 Aligned_cols=305 Identities=29% Similarity=0.435 Sum_probs=254.3
Q ss_pred CCCcCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCC--CCCcChHH
Q 002757 278 AGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPG--AAPVSPRT 355 (884)
Q Consensus 278 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p~~ 355 (884)
...+|++||.|+||||||||+||||+|+|+|+++|+...+..-. ....++++.+|+.|++++|++. ..+++|.+
T Consensus 114 ~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~----~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~ 189 (440)
T cd02669 114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENI----KDRKSELVKRLSELIRKIWNPRNFKGHVSPHE 189 (440)
T ss_pred CccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccc----cCCCcHHHHHHHHHHHHHhccccCCCccCHHH
Confidence 34679999999999999999999999999999999964322100 1234689999999999999876 47899999
Q ss_pred HHHHHhhhC-CCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccce
Q 002757 356 FKSKLARFA-PQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQG 434 (884)
Q Consensus 356 ~~~~l~~~~-~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G 434 (884)
|..++.... +.|.+++||||||||.+|||.||+++++.. +++.++|.++|+|
T Consensus 190 fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~---------------------------~~~~~ii~~~F~G 242 (440)
T cd02669 190 LLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK---------------------------KPNSSIIHDCFQG 242 (440)
T ss_pred HHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC---------------------------CCCCCcceeccCc
Confidence 999998764 579999999999999999999999987531 2356899999999
Q ss_pred EEEEEEEcCCCC---------------CeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHH
Q 002757 435 QYKSTLVCPVCK---------------KVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDL 499 (884)
Q Consensus 435 ~~~s~i~C~~C~---------------~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l 499 (884)
+++++++|..|. ..+.+++||++|+|+||.....
T Consensus 243 ~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~------------------------------- 291 (440)
T cd02669 243 KVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLF------------------------------- 291 (440)
T ss_pred eEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccc-------------------------------
Confidence 999999987654 3577899999999999953210
Q ss_pred HHHHHHHhcCCCCceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCC
Q 002757 500 IRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSC 579 (884)
Q Consensus 500 ~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (884)
.+ .
T Consensus 292 ------------------------------~~----------~------------------------------------- 294 (440)
T cd02669 292 ------------------------------KD----------G------------------------------------- 294 (440)
T ss_pred ------------------------------cc----------c-------------------------------------
Confidence 00 0
Q ss_pred CcccCccEEEEeccccChHHHHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCC
Q 002757 580 PNALGIPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPS 659 (884)
Q Consensus 580 ~~~~g~P~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (884)
.
T Consensus 295 ---------------------------------------~---------------------------------------- 295 (440)
T cd02669 295 ---------------------------------------N---------------------------------------- 295 (440)
T ss_pred ---------------------------------------c----------------------------------------
Confidence 0
Q ss_pred CCceeEEEecCCCCccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHH
Q 002757 660 DAELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCL 739 (884)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL 739 (884)
.. ..+ ..++|++||
T Consensus 296 ----------------------~~------------------------------~~l--------------~~~~l~e~L 309 (440)
T cd02669 296 ----------------------EE------------------------------NII--------------PQVPLKQLL 309 (440)
T ss_pred ----------------------cc------------------------------ccc--------------CcccHHHHH
Confidence 00 000 236899999
Q ss_pred HHhcCccccCCCCcccCCCCCCcceeEEEEEeeecCCeEEEEEeceeeecccccccceeEecccCCCCccccccccC--C
Q 002757 740 EAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLN--D 817 (884)
Q Consensus 740 ~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~--~ 817 (884)
+.| .|+.|+..+.|+|++.|++||+|||||||||.++...+.|+.+.|+||++.|||++|+.... .
T Consensus 310 ~ky------------~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~ 377 (440)
T cd02669 310 KKY------------DGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSL 377 (440)
T ss_pred Hhc------------CCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCcccccc
Confidence 764 57788888999999999999999999999999988788999999999987799999997422 2
Q ss_pred CCCceEEEEEEEEeeecC-CCCeEEEEEEc-CCCCEEEEcCCcceecCcccccCCCeEEEEEE
Q 002757 818 KLSNRYMLYAVSNHYGSM-GGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYR 878 (884)
Q Consensus 818 ~~~~~YdL~aVinH~G~l-~gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~s~~AYlLFY~ 878 (884)
....+|+|+|||+|.|++ .+|||+||+|+ .+++||.|||+.|+++++++|..++||||||+
T Consensus 378 ~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 378 NLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred CCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 367899999999999987 99999999998 57899999999999999999999999999996
No 11
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-60 Score=544.89 Aligned_cols=342 Identities=45% Similarity=0.706 Sum_probs=292.9
Q ss_pred CCcCccccccCCCcccHHHHHHHHhCChHHHHHHHh-ccccccCCCCCCCCchHHHHHHHHHHHHHcCC-CCCCcChHHH
Q 002757 279 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLG-DYFREINHDNPLGMDGEIALAFGDLLRKLWAP-GAAPVSPRTF 356 (884)
Q Consensus 279 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~-~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~-~~~~i~p~~~ 356 (884)
...|.+||.|+|||||||++||||+.|+.|+.+|+. .+...++.++.. ....+..++..++..+|.. ...++.|+.|
T Consensus 297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~-~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f 375 (653)
T KOG1868|consen 297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFF-GAEELESACAKLLQKLWHGHGQFSVLPRRF 375 (653)
T ss_pred cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcc-cchhHHHHHHHhhhhhccCCCceecCcHHH
Confidence 456999999999999999999999999999987774 577777744443 3456777777777777765 5678999999
Q ss_pred HHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCcccc------CCCCCChHHHHHHHHHHhhccCCCcccc
Q 002757 357 KSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAK------DGDGRSDEDIADEYWQNHLARNDSIIVD 430 (884)
Q Consensus 357 ~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~------~~~~~~~~~~a~~~w~~~~~~~~sii~~ 430 (884)
+..++++.+.|+++.|||||||+.++||+||++++.....+..... .....++...+...|..+....++.|.+
T Consensus 376 ~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~ 455 (653)
T KOG1868|consen 376 IRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGD 455 (653)
T ss_pred HHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHH
Confidence 9999999999999999999999999999999999987653211111 1112234445566798888888888999
Q ss_pred ccceEEEEEEEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCC
Q 002757 431 LCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALG 510 (884)
Q Consensus 431 lF~G~~~s~i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~ 510 (884)
+|.||+++.++|..|++.|.+|++|++|+||||.....
T Consensus 456 lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~------------------------------------------ 493 (653)
T KOG1868|consen 456 LFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFA------------------------------------------ 493 (653)
T ss_pred HHHHHHHhheehhhcCCcceeeecceeeEEeccccccc------------------------------------------
Confidence 99999999999999999999999999999999943100
Q ss_pred CCceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEE
Q 002757 511 VNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAK 590 (884)
Q Consensus 511 ~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~ 590 (884)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccChHHHHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecC
Q 002757 591 VSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDE 670 (884)
Q Consensus 591 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (884)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCC
Q 002757 671 KGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGP 750 (884)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~ 750 (884)
...++|++|+..||+.|+|++
T Consensus 494 -----------------------------------------------------------~~~~~L~~C~~~ft~~ekle~ 514 (653)
T KOG1868|consen 494 -----------------------------------------------------------GGKVSLEDCLSLFTKEEKLEG 514 (653)
T ss_pred -----------------------------------------------------------ccccchHhhhccccchhhccc
Confidence 013689999999999999999
Q ss_pred CCcccCCCCCCcceeE--EEEEeeecCCeEEEEEeceeeecccccccceeEecccCCCCccccccccCCCCCceEEEEEE
Q 002757 751 EDMWYCPGCKKHCQAS--KKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAV 828 (884)
Q Consensus 751 ~d~w~C~~Ck~~~~A~--Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aV 828 (884)
+++|.||+|++.+.++ |++.||++|+|||||||||.+++....|..+.|+||+..+|+.+++....+ ....|+||||
T Consensus 515 ~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~-~~~~Y~L~aV 593 (653)
T KOG1868|consen 515 DEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGN-NPKSYRLYAV 593 (653)
T ss_pred ccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCC-CccceeeEEE
Confidence 9999999999998885 999999999999999999999988889999999999989999998877665 5666999999
Q ss_pred EEeeecCCCCeEEEEEEc-CCCCEEEEcCCcceecCcccccCCCeEEEEEEEecCC
Q 002757 829 SNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVEV 883 (884)
Q Consensus 829 inH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~s~~AYlLFY~R~~~~ 883 (884)
+||+|++.||||||||+. ..+.|+.|||+.|+.++..++.+++||||||+|.+..
T Consensus 594 v~H~Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~ 649 (653)
T KOG1868|consen 594 VNHSGTLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIF 649 (653)
T ss_pred EeccCcccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCcc
Confidence 999999999999999977 5788999999999999999999999999999998753
No 12
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.2e-59 Score=515.67 Aligned_cols=277 Identities=31% Similarity=0.522 Sum_probs=239.7
Q ss_pred ccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCcChHH-HHHHHhhh
Q 002757 285 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRT-FKSKLARF 363 (884)
Q Consensus 285 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~-~~~~l~~~ 363 (884)
||.|+||||||||+||||+++|+|++++++...... .....+..+|+.|+..|..+...++.|.. |..++.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~-- 72 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR-- 72 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--
Confidence 899999999999999999999999999986432211 11245788899999888766666777776 665543
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEEEEEEcC
Q 002757 364 APQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVCP 443 (884)
Q Consensus 364 ~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C~ 443 (884)
.+.|..+.||||||||.+|||.|+ ++|.++|.|++.++++|.
T Consensus 73 ~~~f~~~~QqDa~EFl~~lLd~l~--------------------------------------~~i~~~F~G~~~~~i~C~ 114 (327)
T cd02664 73 PPWFTPGSQQDCSEYLRYLLDRLH--------------------------------------TLIEKMFGGKLSTTIRCL 114 (327)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHH--------------------------------------HHHHhhCcEEeEeEEEcC
Confidence 578999999999999999999998 137789999999999999
Q ss_pred CCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecc
Q 002757 444 VCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNH 523 (884)
Q Consensus 444 ~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~ 523 (884)
.|++++.++|+|..|+|+||
T Consensus 115 ~C~~~s~~~e~f~~l~L~i~------------------------------------------------------------ 134 (327)
T cd02664 115 NCNSTSARTERFRDLDLSFP------------------------------------------------------------ 134 (327)
T ss_pred CCCCEecccccceeeecCCC------------------------------------------------------------
Confidence 99999999999999998875
Q ss_pred eeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHHHH
Q 002757 524 QIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRNL 603 (884)
Q Consensus 524 ~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~i~~~ 603 (884)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCccccccccCc
Q 002757 604 YLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMNE 683 (884)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (884)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCCCCcc
Q 002757 684 PIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHC 763 (884)
Q Consensus 684 ~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~ 763 (884)
+|++||+.|+++|.|.+++.|+|++|++++
T Consensus 135 --------------------------------------------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~ 164 (327)
T cd02664 135 --------------------------------------------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQ 164 (327)
T ss_pred --------------------------------------------------CHHHHHHHhcCeeEccCCCceeCCccCCcc
Confidence 356899999999999999999999999999
Q ss_pred eeEEEEEeeecCCeEEEEEeceeeec--ccccccceeEecccCCCCcccccccc------------------CCCCCceE
Q 002757 764 QASKKLDLWRLPEILVIHLKRFSYSR--FSKNKLETYVDFPVDNLDLSTHVAHL------------------NDKLSNRY 823 (884)
Q Consensus 764 ~A~Kk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~------------------~~~~~~~Y 823 (884)
.|+|++.|.++|+||+||||||.|+. +.+.||++.|.|| +.|||.+|+... .......|
T Consensus 165 ~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp-~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 243 (327)
T cd02664 165 DAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSIN-EVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHY 243 (327)
T ss_pred ceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecC-CEEecCccccccccccccccccccccccccccCCCceE
Confidence 99999999999999999999999974 3567999999999 589999997421 11246799
Q ss_pred EEEEEEEeee-cCCCCeEEEEEEcCC---------------------CCEEEEcCCcceecCcccccC-------CCeEE
Q 002757 824 MLYAVSNHYG-SMGGGHYTAFVHHGG---------------------GQWYDFDDSHVYPISQDKIKT-------SAAYV 874 (884)
Q Consensus 824 dL~aVinH~G-~l~gGHYtAy~k~~~---------------------~~Wy~fnDs~Vs~v~~~~v~s-------~~AYl 874 (884)
+|+|||+|.| ++.+||||||+|... ++||.|||+.|+++++++|.+ ..|||
T Consensus 244 ~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYl 323 (327)
T cd02664 244 RLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYI 323 (327)
T ss_pred EEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEE
Confidence 9999999999 689999999999843 799999999999999999875 89999
Q ss_pred EEEE
Q 002757 875 LFYR 878 (884)
Q Consensus 875 LFY~ 878 (884)
||||
T Consensus 324 LfY~ 327 (327)
T cd02664 324 LFYE 327 (327)
T ss_pred EEeC
Confidence 9996
No 13
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-57 Score=501.30 Aligned_cols=287 Identities=32% Similarity=0.458 Sum_probs=248.8
Q ss_pred ccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCcChHHHHHHHhhhC
Q 002757 285 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLARFA 364 (884)
Q Consensus 285 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~ 364 (884)
||.|+||||||||+||||+|+|+|++++++..... ........+++.+|+.|+..|+.+. .+++|..|...+++..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~ 76 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPAR---RGANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAF 76 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccc---cccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHC
Confidence 89999999999999999999999999998532211 0122345789999999999998765 4899999999999999
Q ss_pred CCCC------CCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEEE
Q 002757 365 PQFS------GFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKS 438 (884)
Q Consensus 365 ~~F~------~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s 438 (884)
+.|. +++||||||||.+|||.||++++.. ..+.++|.++|+|++.+
T Consensus 77 ~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~----------------------------~~~~~~i~~~F~g~~~~ 128 (305)
T cd02657 77 PQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA----------------------------GSKGSFIDQLFGIELET 128 (305)
T ss_pred cCcccccCCCCccccCHHHHHHHHHHHHHHHhccc----------------------------CCCCcHHHHhhceEEEE
Confidence 9994 5699999999999999999998641 12457799999999999
Q ss_pred EEEcCCCC-CeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEE
Q 002757 439 TLVCPVCK-KVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLV 517 (884)
Q Consensus 439 ~i~C~~C~-~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 517 (884)
+++|..|+ .++.++|+|+.|+|+||...
T Consensus 129 ~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~--------------------------------------------------- 157 (305)
T cd02657 129 KMKCTESPDEEEVSTESEYKLQCHISITT--------------------------------------------------- 157 (305)
T ss_pred EEEcCCCCCCCccccccceEEEeecCCCc---------------------------------------------------
Confidence 99999999 89999999999999998320
Q ss_pred EEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccCh
Q 002757 518 AEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHG 597 (884)
Q Consensus 518 ~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~ 597 (884)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccc
Q 002757 598 LDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNS 677 (884)
Q Consensus 598 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (884)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCC
Q 002757 678 KIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCP 757 (884)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~ 757 (884)
...+|++||+.++++|.. ..|+
T Consensus 158 -----------------------------------------------------~~~~l~~~L~~~~~~~~~-----~~~~ 179 (305)
T cd02657 158 -----------------------------------------------------EVNYLQDGLKKGLEEEIE-----KHSP 179 (305)
T ss_pred -----------------------------------------------------ccccHHHHHHHhhhhhhh-----hcCc
Confidence 013689999999987764 4799
Q ss_pred CCCCcceeEEEEEeeecCCeEEEEEeceeeecc--cccccceeEecccCCCCccccccccCCCCCceEEEEEEEEeee-c
Q 002757 758 GCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF--SKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYG-S 834 (884)
Q Consensus 758 ~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVinH~G-~ 834 (884)
.|+....++|+..|.++|+||+||||||.|+.. ...|+++.|.|| ..|||++|+. .+.+|+|+|||+|.| +
T Consensus 180 ~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~-----~~~~Y~L~~vI~H~G~~ 253 (305)
T cd02657 180 TLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFP-FELDLYELCT-----PSGYYELVAVITHQGRS 253 (305)
T ss_pred ccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECC-ceEecccccC-----CCCcEEEEEEEEecCCC
Confidence 999999999999999999999999999998753 467999999999 4899999987 457899999999999 6
Q ss_pred CCCCeEEEEEEcCC-CCEEEEcCCcceecCcccccC-------CCeEEEEEE
Q 002757 835 MGGGHYTAFVHHGG-GQWYDFDDSHVYPISQDKIKT-------SAAYVLFYR 878 (884)
Q Consensus 835 l~gGHYtAy~k~~~-~~Wy~fnDs~Vs~v~~~~v~s-------~~AYlLFY~ 878 (884)
+.+|||+||+|..+ ++||.|||+.|+++++++|.. ..|||||||
T Consensus 254 ~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 254 ADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred CCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 99999999999944 899999999999999999964 699999997
No 14
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.3e-57 Score=499.78 Aligned_cols=292 Identities=29% Similarity=0.472 Sum_probs=245.7
Q ss_pred ccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCC--------------CCC
Q 002757 285 GLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPG--------------AAP 350 (884)
Q Consensus 285 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~--------------~~~ 350 (884)
||.|+||||||||+||||+|+|+|+++|++...... .+.....+++.++|++|+..|++.. ..+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFP--SDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccC--CCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 899999999999999999999999999986221111 1222335679999999999998753 246
Q ss_pred cChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcccc
Q 002757 351 VSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVD 430 (884)
Q Consensus 351 i~p~~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~ 430 (884)
++|..|+.+++...|.|.++.||||||||.+|||.||+++... ..+.+.+
T Consensus 79 i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------------------------~~~~~~~ 128 (311)
T cd02658 79 IKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------------------------LGLNPND 128 (311)
T ss_pred cCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------------------------ccCCchh
Confidence 8999999999999999999999999999999999999987521 1234788
Q ss_pred ccceEEEEEEEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCC
Q 002757 431 LCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALG 510 (884)
Q Consensus 431 lF~G~~~s~i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~ 510 (884)
+|.|.+.++++|..|++++.+.++|..|+||||......
T Consensus 129 ~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~----------------------------------------- 167 (311)
T cd02658 129 LFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATE----------------------------------------- 167 (311)
T ss_pred heEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccc-----------------------------------------
Confidence 999999999999999999999999999999998532000
Q ss_pred CCceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEE
Q 002757 511 VNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAK 590 (884)
Q Consensus 511 ~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~ 590 (884)
..
T Consensus 168 -~~----------------------------------------------------------------------------- 169 (311)
T cd02658 168 -KE----------------------------------------------------------------------------- 169 (311)
T ss_pred -cc-----------------------------------------------------------------------------
Confidence 00
Q ss_pred eccccChHHHHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecC
Q 002757 591 VSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDE 670 (884)
Q Consensus 591 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (884)
.
T Consensus 170 ----------------------------------~--------------------------------------------- 170 (311)
T cd02658 170 ----------------------------------E--------------------------------------------- 170 (311)
T ss_pred ----------------------------------c---------------------------------------------
Confidence 0
Q ss_pred CCCccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCC
Q 002757 671 KGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGP 750 (884)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~ 750 (884)
.......++|++||+.|+++|.+.
T Consensus 171 -------------------------------------------------------~~~~~~~~sl~~~L~~~~~~e~i~- 194 (311)
T cd02658 171 -------------------------------------------------------GELVYEPVPLEDCLKAYFAPETIE- 194 (311)
T ss_pred -------------------------------------------------------ccccCCCCCHHHHHHHHcCccccc-
Confidence 000003469999999999999996
Q ss_pred CCcccCCCCCCcceeEEEEEeeecCCeEEEEEeceeee-cccccccceeEecccCCCCccccccccCCCCCceEEEEEEE
Q 002757 751 EDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYS-RFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVS 829 (884)
Q Consensus 751 ~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVi 829 (884)
++|++|++++.|+|+..|.++|+||+||||||.++ .+...|+++.|.||. .| ....|+|+|||
T Consensus 195 ---~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~-~l------------~~~~Y~L~~vI 258 (311)
T cd02658 195 ---DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPE-EL------------GPGKYELIAFI 258 (311)
T ss_pred ---ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCC-cC------------CCCcEEEEEEE
Confidence 48999999999999999999999999999999995 556789999999994 55 34679999999
Q ss_pred Eeee-cCCCCeEEEEEEcC---CCCEEEEcCCcceecCcccccCCCeEEEEEE
Q 002757 830 NHYG-SMGGGHYTAFVHHG---GGQWYDFDDSHVYPISQDKIKTSAAYVLFYR 878 (884)
Q Consensus 830 nH~G-~l~gGHYtAy~k~~---~~~Wy~fnDs~Vs~v~~~~v~s~~AYlLFY~ 878 (884)
+|.| ++++||||||+|.. +++||.|||+.|+++++.+|.+..||||||+
T Consensus 259 ~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 259 SHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred EccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 9999 59999999999984 3899999999999999999999999999996
No 15
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.7e-57 Score=495.47 Aligned_cols=302 Identities=37% Similarity=0.615 Sum_probs=263.2
Q ss_pred ccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCcChHHHHHHHhh
Q 002757 283 LTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLAR 362 (884)
Q Consensus 283 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~ 362 (884)
++||.|+||||||||+||+|+|+|+|++++++..+.... .....++.++|+.++..++.++...+.|..|..++..
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~ 76 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDC----CNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQ 76 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhc----cCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHH
Confidence 589999999999999999999999999999853222211 1123578999999999998888889999999999999
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEEEEEEc
Q 002757 363 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVC 442 (884)
Q Consensus 363 ~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C 442 (884)
..+.|..+.||||+|||.+|||.||+++......... ........++|.++|+|++.++++|
T Consensus 77 ~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~F~g~~~~~~~C 138 (304)
T cd02661 77 ISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA------------------VDPSSQETTLVQQIFGGYLRSQVKC 138 (304)
T ss_pred HHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc------------------cCccccCCChhhhcCCcEEeeeEEe
Confidence 9999999999999999999999999887543221110 0012234678999999999999999
Q ss_pred CCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEec
Q 002757 443 PVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYN 522 (884)
Q Consensus 443 ~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 522 (884)
..|++.+.++|+|+.|+|+||..
T Consensus 139 ~~C~~~s~~~e~~~~l~l~i~~~--------------------------------------------------------- 161 (304)
T cd02661 139 LNCKHVSNTYDPFLDLSLDIKGA--------------------------------------------------------- 161 (304)
T ss_pred CCCCCCcCccccceeeeeecCCC---------------------------------------------------------
Confidence 99999999999999999998721
Q ss_pred ceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHHH
Q 002757 523 HQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRN 602 (884)
Q Consensus 523 ~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~i~~ 602 (884)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCccccccccC
Q 002757 603 LYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMN 682 (884)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (884)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCCCCc
Q 002757 683 EPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKH 762 (884)
Q Consensus 683 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~ 762 (884)
.+|++||+.|+.+|.+++++.|+|++|++.
T Consensus 162 --------------------------------------------------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~ 191 (304)
T cd02661 162 --------------------------------------------------DSLEDALEQFTKPEQLDGENKYKCERCKKK 191 (304)
T ss_pred --------------------------------------------------CcHHHHHHHhcCceeeCCCCCeeCCCCCCc
Confidence 268899999999999999999999999999
Q ss_pred ceeEEEEEeeecCCeEEEEEeceeeecccccccceeEecccCCCCccccccccCCCCCceEEEEEEEEeeec-CCCCeEE
Q 002757 763 CQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGS-MGGGHYT 841 (884)
Q Consensus 763 ~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVinH~G~-l~gGHYt 841 (884)
+.++|+..|.++|+||+|||+||.++ ...|+++.|.|| +.|||.+|+..... ....|+|+|||+|+|. +++|||+
T Consensus 192 ~~~~~~~~i~~~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~-~~L~l~~~~~~~~~-~~~~Y~L~~vi~H~G~~~~~GHY~ 267 (304)
T cd02661 192 VKASKQLTIHRAPNVLTIHLKRFSNF--RGGKINKQISFP-ETLDLSPYMSQPND-GPLKYKLYAVLVHSGFSPHSGHYY 267 (304)
T ss_pred cceEEEEEEecCCcEEEEEEeccccC--CccccCCeEecC-CeechhhccccCCC-CCceeeEEEEEEECCCCCCCcCCE
Confidence 99999999999999999999999987 567999999999 58999999986443 6789999999999995 5999999
Q ss_pred EEEEcCCCCEEEEcCCcceecCcccccCCCeEEEEE
Q 002757 842 AFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFY 877 (884)
Q Consensus 842 Ay~k~~~~~Wy~fnDs~Vs~v~~~~v~s~~AYlLFY 877 (884)
||+|..+++||+|||+.|+++++++|.+..||||||
T Consensus 268 ~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y 303 (304)
T cd02661 268 CYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303 (304)
T ss_pred EEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEe
Confidence 999997789999999999999999999999999999
No 16
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-56 Score=498.60 Aligned_cols=298 Identities=29% Similarity=0.490 Sum_probs=253.9
Q ss_pred CccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCcChHHHHHHHh
Q 002757 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLA 361 (884)
Q Consensus 282 g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~ 361 (884)
|++||.|+||||||||+||||+|+|+|++++++.... ........+.++|+.|+..|..+....+.|..+.....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~-----~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT-----EDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRS 75 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc-----ccCcccccHHHHHHHHHHHHHhCCccccCcchhheecc
Confidence 7899999999999999999999999999999864211 11112457899999999999877666667766542222
Q ss_pred hhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEEEEEE
Q 002757 362 RFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLV 441 (884)
Q Consensus 362 ~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~ 441 (884)
.....|..++||||||||.+||+.|++++... ...++|.++|.|.+..+++
T Consensus 76 ~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------------------------~~~~~i~~lF~g~~~~~~~ 126 (334)
T cd02659 76 FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------------------------GQEGLIKNLFGGKLVNYII 126 (334)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHhccC-----------------------------cccchhhhhCceEEEeEEE
Confidence 23457889999999999999999999887531 1235689999999999999
Q ss_pred cCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEe
Q 002757 442 CPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIY 521 (884)
Q Consensus 442 C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~ 521 (884)
|..|++.+.+.++|..|+|++|.
T Consensus 127 C~~C~~~s~~~e~f~~l~l~i~~--------------------------------------------------------- 149 (334)
T cd02659 127 CKECPHESEREEYFLDLQVAVKG--------------------------------------------------------- 149 (334)
T ss_pred ecCCCceecccccceEEEEEcCC---------------------------------------------------------
Confidence 99999999999999999998762
Q ss_pred cceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHH
Q 002757 522 NHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIR 601 (884)
Q Consensus 522 ~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~i~ 601 (884)
T Consensus 150 -------------------------------------------------------------------------------- 149 (334)
T cd02659 150 -------------------------------------------------------------------------------- 149 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccccc
Q 002757 602 NLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVM 681 (884)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (884)
T Consensus 150 -------------------------------------------------------------------------------- 149 (334)
T cd02659 150 -------------------------------------------------------------------------------- 149 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCCCC
Q 002757 682 NEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKK 761 (884)
Q Consensus 682 ~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~ 761 (884)
..+|++||+.|+.+|.+.+++.|.|++|++
T Consensus 150 --------------------------------------------------~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~ 179 (334)
T cd02659 150 --------------------------------------------------KKNLEESLDAYVQGETLEGDNKYFCEKCGK 179 (334)
T ss_pred --------------------------------------------------CCCHHHHHHHhcCeeEecCCccEecCcCCC
Confidence 126889999999999999999999999999
Q ss_pred cceeEEEEEeeecCCeEEEEEeceeeec--ccccccceeEecccCCCCcccccccc----------CCCCCceEEEEEEE
Q 002757 762 HCQASKKLDLWRLPEILVIHLKRFSYSR--FSKNKLETYVDFPVDNLDLSTHVAHL----------NDKLSNRYMLYAVS 829 (884)
Q Consensus 762 ~~~A~Kk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~v~~~----------~~~~~~~YdL~aVi 829 (884)
.+.|.|+..|.++|+||+|||+||.++. ..+.|+++.|.|| +.|||++|+... .......|+|+|||
T Consensus 180 ~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI 258 (334)
T cd02659 180 KVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFP-LELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVL 258 (334)
T ss_pred cccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCC-ceecCccccccccccccccccccCCCCeeEEEEEEE
Confidence 9999999999999999999999999863 4578999999999 589999998753 22356889999999
Q ss_pred EeeecCCCCeEEEEEEc-CCCCEEEEcCCcceecCccccc----------------------CCCeEEEEEEEec
Q 002757 830 NHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIK----------------------TSAAYVLFYRRVV 881 (884)
Q Consensus 830 nH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~----------------------s~~AYlLFY~R~~ 881 (884)
+|.|...+|||+||+|. .+++||.|||+.|+++++++|. +..||||||+|++
T Consensus 259 ~H~G~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 259 VHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred EecCCCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 99999999999999998 5799999999999999988884 4579999999975
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-51 Score=435.89 Aligned_cols=122 Identities=34% Similarity=0.654 Sum_probs=112.4
Q ss_pred CCHHHHHHHhcCccccCCCCcccCCCCCCcceeEEEEEeeecCCeEEEEEeceeeec-ccccccceeEecccCCCCcccc
Q 002757 733 VSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSR-FSKNKLETYVDFPVDNLDLSTH 811 (884)
Q Consensus 733 isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls~~ 811 (884)
.+|++||+.|+.+|.+++ |.|++| +..|.++|+||+||||||.++. +...|+++.|.||. .|
T Consensus 96 ~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~-~l----- 158 (240)
T cd02662 96 TTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPE-RL----- 158 (240)
T ss_pred CCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCC-cc-----
Confidence 589999999999999975 899999 6789999999999999999987 77889999999994 55
Q ss_pred ccccCCCCCceEEEEEEEEeeecCCCCeEEEEEEcC---------------------CCCEEEEcCCcceecCcccc-cC
Q 002757 812 VAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHG---------------------GGQWYDFDDSHVYPISQDKI-KT 869 (884)
Q Consensus 812 v~~~~~~~~~~YdL~aVinH~G~l~gGHYtAy~k~~---------------------~~~Wy~fnDs~Vs~v~~~~v-~s 869 (884)
....|+|+|||+|.|+..+|||+||+|.. .++||+|||+.|+++++++| .+
T Consensus 159 -------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~ 231 (240)
T cd02662 159 -------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQ 231 (240)
T ss_pred -------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhC
Confidence 45789999999999988999999999984 48999999999999999999 99
Q ss_pred CCeEEEEEE
Q 002757 870 SAAYVLFYR 878 (884)
Q Consensus 870 ~~AYlLFY~ 878 (884)
++||||||+
T Consensus 232 ~~aY~LfYe 240 (240)
T cd02662 232 KSAYMLFYE 240 (240)
T ss_pred CCEEEEEeC
Confidence 999999996
No 18
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-50 Score=450.40 Aligned_cols=149 Identities=38% Similarity=0.610 Sum_probs=133.7
Q ss_pred CCCCHHHHHHHhcCccccCCCCcccCCCCCC---------------------------cceeEEEEEeeecCCeEEEEEe
Q 002757 731 ESVSLYKCLEAFLTEEPLGPEDMWYCPGCKK---------------------------HCQASKKLDLWRLPEILVIHLK 783 (884)
Q Consensus 731 ~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~---------------------------~~~A~Kk~~i~~lP~iLiIhLK 783 (884)
.++|+++||..||+.|.|.++|+|-|+.|.+ ...|.|++.|-.+||||+||||
T Consensus 676 ~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlK 755 (877)
T KOG1873|consen 676 EPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLK 755 (877)
T ss_pred CCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHh
Confidence 5899999999999999999999999999977 1237899999999999999999
Q ss_pred ceeee-cccccccceeEecccCCCCccccccccCC----CCCceEEEEEEEEeeecCCCCeEEEEEEc------------
Q 002757 784 RFSYS-RFSKNKLETYVDFPVDNLDLSTHVAHLND----KLSNRYMLYAVSNHYGSMGGGHYTAFVHH------------ 846 (884)
Q Consensus 784 RF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~~~~----~~~~~YdL~aVinH~G~l~gGHYtAy~k~------------ 846 (884)
||... +....|++.+|+|+ |-+||.+|+..+.. .....|+|+||+.|.|.|.+||||||+|.
T Consensus 756 rf~q~~~~~~~k~~~h~~f~-E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~ 834 (877)
T KOG1873|consen 756 RFFQDIRGRLSKLNKHVDFK-EFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNS 834 (877)
T ss_pred hhhhhhhchhhcccccchHH-HHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCcccc
Confidence 99987 45578999999999 89999999875432 13458999999999999999999999996
Q ss_pred ---------CCCCEEEEcCCcceecCcccccCCCeEEEEEEEe
Q 002757 847 ---------GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRV 880 (884)
Q Consensus 847 ---------~~~~Wy~fnDs~Vs~v~~~~v~s~~AYlLFY~R~ 880 (884)
..++||+..|++|+++++++|+...||||||+|+
T Consensus 835 ~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 835 KDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred ccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 1478999999999999999999999999999996
No 19
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.7e-49 Score=415.61 Aligned_cols=147 Identities=49% Similarity=0.875 Sum_probs=137.0
Q ss_pred CCCHHHHHHHhcCccccCCCCcccCCCCCCcceeEEEEEeeecCCeEEEEEeceeeecccccccceeEecccCCCCcccc
Q 002757 732 SVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTH 811 (884)
Q Consensus 732 ~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~ 811 (884)
..+|++||+.|+.+|.+++.+.|.|++|++++.+.++..|.++|+||+|||+||.++.....|+++.|.||.+.|||++|
T Consensus 83 ~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~ 162 (230)
T cd02674 83 KVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPY 162 (230)
T ss_pred CCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEeccccccccccc
Confidence 35899999999999999999999999999999999999999999999999999999988889999999999888999999
Q ss_pred ccccCCCCCceEEEEEEEEeeecCCCCeEEEEEEcC-CCCEEEEcCCcceecCcccccCCCeEEEEEE
Q 002757 812 VAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHG-GGQWYDFDDSHVYPISQDKIKTSAAYVLFYR 878 (884)
Q Consensus 812 v~~~~~~~~~~YdL~aVinH~G~l~gGHYtAy~k~~-~~~Wy~fnDs~Vs~v~~~~v~s~~AYlLFY~ 878 (884)
+.........+|+|+|||.|.|..++|||+||+|.. +++||.|||+.|++++++++....||||||+
T Consensus 163 ~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 163 VDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred cCcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 755545578899999999999977999999999994 4899999999999999999999999999996
No 20
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.8e-46 Score=392.72 Aligned_cols=129 Identities=27% Similarity=0.469 Sum_probs=107.8
Q ss_pred CHHHHHHHhcCccccCCCCcccCCCCCCcceeEEEEEeeecCCeEEEEEeceeeecccccccceeEecccCCCCcccccc
Q 002757 734 SLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVA 813 (884)
Q Consensus 734 sL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~ 813 (884)
+|++|++.|.++|.++ |.|++|+.. .|+|+..|+++|+||+||||||.+.. ++...+.. ..++|.+|+.
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~----~~~~~~~~--~~~~~~~~~~ 179 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI----ATSDYLKK--NEEIMKKYCG 179 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc----cccccccc--cccccccccC
Confidence 4678888888877764 799999975 89999999999999999999997643 23333333 3567888765
Q ss_pred ccCCCCCceEEEEEEEEeee-cCCCCeEEEEEEc-C-CCCEEEEcCCcceecCccccc---CCCeEEEEEE
Q 002757 814 HLNDKLSNRYMLYAVSNHYG-SMGGGHYTAFVHH-G-GGQWYDFDDSHVYPISQDKIK---TSAAYVLFYR 878 (884)
Q Consensus 814 ~~~~~~~~~YdL~aVinH~G-~l~gGHYtAy~k~-~-~~~Wy~fnDs~Vs~v~~~~v~---s~~AYlLFY~ 878 (884)
....|+|+|||+|.| ++++||||||+|. . +++||.|||+.|+++++++|. +..||||||+
T Consensus 180 -----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 180 -----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred -----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 456799999999999 5899999999998 3 689999999999999999997 6799999996
No 21
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-46 Score=424.24 Aligned_cols=323 Identities=32% Similarity=0.592 Sum_probs=271.3
Q ss_pred CCcCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCC-CCCcChHHHH
Q 002757 279 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPG-AAPVSPRTFK 357 (884)
Q Consensus 279 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~-~~~i~p~~~~ 357 (884)
..-|+.||.|+|||||||++||+|.|.+..+..++...+..-.. .....++.+++.+++..+|++. ..+++|..+.
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~---~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l 233 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPS---SSGSSCLVCDLDRLFQALYSGHNRTPYSPFELL 233 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCC---CCCCcchhhhhhhhhhHhhcCCCCCCcChHHHH
Confidence 45699999999999999999999999999999988766552111 1114689999999999999999 8999999999
Q ss_pred HHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEE
Q 002757 358 SKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYK 437 (884)
Q Consensus 358 ~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~ 437 (884)
..+.+..|.|.||.|||||||+..+++.+|.+.....+..... .. . +.-.+++...|.|++.
T Consensus 234 ~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~---~~------------~---~~c~~iv~~~F~G~L~ 295 (492)
T KOG1867|consen 234 NLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIAS---QS------------N---KQCPCIVHTIFSGTLQ 295 (492)
T ss_pred HHHHHhCcccccccccchHHHHHHhcccccccccccccccccc---cC------------C---cccccccceeecceec
Confidence 9999999999999999999999999999998771111110000 00 0 0236789999999999
Q ss_pred EEEEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEE
Q 002757 438 STLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLV 517 (884)
Q Consensus 438 s~i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 517 (884)
+.++|..|+..|.+++||++|+|.||....-
T Consensus 296 ~~v~c~~c~~~S~~~dpf~disL~i~~~~~~------------------------------------------------- 326 (492)
T KOG1867|consen 296 SDVTCQTCGSKSTTYDPFMDISLDIPDQFTS------------------------------------------------- 326 (492)
T ss_pred cceeehhhcceeeeccCccceeeecchhccC-------------------------------------------------
Confidence 9999999999999999999999999843100
Q ss_pred EEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccCh
Q 002757 518 AEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHG 597 (884)
Q Consensus 518 ~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~ 597 (884)
+
T Consensus 327 --------------------------------------------------------------------~----------- 327 (492)
T KOG1867|consen 327 --------------------------------------------------------------------S----------- 327 (492)
T ss_pred --------------------------------------------------------------------c-----------
Confidence 0
Q ss_pred HHHHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccc
Q 002757 598 LDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNS 677 (884)
Q Consensus 598 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (884)
.
T Consensus 328 ---------------------~---------------------------------------------------------- 328 (492)
T KOG1867|consen 328 ---------------------S---------------------------------------------------------- 328 (492)
T ss_pred ---------------------c----------------------------------------------------------
Confidence 0
Q ss_pred ccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCC
Q 002757 678 KIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCP 757 (884)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~ 757 (884)
. .. ...++.+|++.|+..|.++......|.
T Consensus 329 ------------~------------------------~~--------------~~~~~~~cl~~~~~~~~~~~~~~~~c~ 358 (492)
T KOG1867|consen 329 ------------V------------------------RS--------------PELTLLDCLDRFTRSEQLGKDSKYKCS 358 (492)
T ss_pred ------------c------------------------cc--------------chhhhhhhhhhhhhhhhcCcccccccC
Confidence 0 00 013688999999999999999999999
Q ss_pred CCCCcceeEEEEEeeecCCeEEEEEeceeeeccccc-ccceeEecccCCCCcccccccc---CC-CCCceEEEEEEEEee
Q 002757 758 GCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKN-KLETYVDFPVDNLDLSTHVAHL---ND-KLSNRYMLYAVSNHY 832 (884)
Q Consensus 758 ~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~-Ki~~~V~FPi~~LDls~~v~~~---~~-~~~~~YdL~aVinH~ 832 (884)
.|+..+.++|++.|-++|.+|.+|||||.+...... |++.+|.|| ..|+|.+|+... .. ..+..|+|+|||+|+
T Consensus 359 ~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp-~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~ 437 (492)
T KOG1867|consen 359 SCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFP-VLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHH 437 (492)
T ss_pred CcccccccccccccccCCceeeeeeccccccccccccccCcccccc-hhhcCCccccccccccCCCCCceEEEEEEEEec
Confidence 999999999999999999999999999999854433 999999999 599999999851 11 257999999999999
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEcCCcceecCcccccCCCeEEEEEEEec
Q 002757 833 GSMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVV 881 (884)
Q Consensus 833 G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~v~~~~v~s~~AYlLFY~R~~ 881 (884)
|.+++||||||+|+. +.||+|||+.|+.+++++|.+..||+|||.++.
T Consensus 438 G~~~SGHY~aY~r~~-~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~~ 485 (492)
T KOG1867|consen 438 GTVGSGHYVAYRRQS-GGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQEQ 485 (492)
T ss_pred cCCCCCceEEEEEeC-CCcEEEcCeEEEEeeHHHhhhchhhheehhHHh
Confidence 999999999999985 789999999999999999999999999998753
No 22
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.7e-45 Score=379.44 Aligned_cols=126 Identities=26% Similarity=0.430 Sum_probs=110.7
Q ss_pred CHHHHHHHhcCccccCCCCcccCCCCCCcceeEEEEEeeecCCeEEEEEeceeeecccccccceeEecccCCCCcccccc
Q 002757 734 SLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVA 813 (884)
Q Consensus 734 sL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~ 813 (884)
+|++||+.|+.+|.+++++.++ .+.++|+..|+++|+||+||||||.|+.....|+++.|.||+ .|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~-~l------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQ-II------- 159 (228)
T ss_pred CHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeC-cc-------
Confidence 7999999999999998754433 345778888999999999999999998877899999999995 45
Q ss_pred ccCCCCCceEEEEEEEEeeecCCCCeEEEEEEc-CCCCEEEEcCCcceecCccccc--------CCCeEEEEEE
Q 002757 814 HLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIK--------TSAAYVLFYR 878 (884)
Q Consensus 814 ~~~~~~~~~YdL~aVinH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~--------s~~AYlLFY~ 878 (884)
....|+|+||++|.|++++|||+||+|. .+++||+|||+.|+++++++|. ..+||||||.
T Consensus 160 -----~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 160 -----QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred -----CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 3468999999999999999999999997 5789999999999999998886 3489999994
No 23
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.9e-44 Score=387.03 Aligned_cols=258 Identities=40% Similarity=0.732 Sum_probs=212.0
Q ss_pred ccccccCCCcccHHHHHHHHhCChHHHHHHHhc-cccccCCCCCCCCchHHHHHHHHHHHHHcCC--CCCCcChHHHHHH
Q 002757 283 LTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAP--GAAPVSPRTFKSK 359 (884)
Q Consensus 283 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~--~~~~i~p~~~~~~ 359 (884)
++||.|.||||||||+||||+++|+|++++++. .....+..++.....+++.+|+.|+..|+.. ....+.|..|..+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999864 2222344455566678999999999999988 6788999999999
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEEEE
Q 002757 360 LARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKST 439 (884)
Q Consensus 360 l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~ 439 (884)
++...+.|..++||||+|||..||+.|++++..... ...|........+++.++|.|++...
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~f~~~~~~~ 142 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFK------------------RKSWKNTNSSEDSLISDLFGGQFESS 142 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSS------------------HHHHHHHHCCEESHHHHHH-EEEEEE
T ss_pred ccccccccccccccchhhhhcccccccchhhccccc------------------cccccccccccccccccccccccccc
Confidence 999999999999999999999999999998865322 23445666677788888888888888
Q ss_pred EEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEE
Q 002757 440 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 519 (884)
Q Consensus 440 i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 519 (884)
+.|..|+..
T Consensus 143 ~~c~~c~~~----------------------------------------------------------------------- 151 (269)
T PF00443_consen 143 IKCSSCKNS----------------------------------------------------------------------- 151 (269)
T ss_dssp EEETTTTCE-----------------------------------------------------------------------
T ss_pred ccccccccc-----------------------------------------------------------------------
Confidence 888776654
Q ss_pred EecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHH
Q 002757 520 IYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLD 599 (884)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~ 599 (884)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccc
Q 002757 600 IRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKI 679 (884)
Q Consensus 600 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (884)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCC
Q 002757 680 VMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGC 759 (884)
Q Consensus 680 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~C 759 (884)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcceeEEEEEeeecCCeEEEEEeceeeecc--cccccceeEecccCCCCccccccccCC--CCCceEEEEEEEEeeecC
Q 002757 760 KKHCQASKKLDLWRLPEILVIHLKRFSYSRF--SKNKLETYVDFPVDNLDLSTHVAHLND--KLSNRYMLYAVSNHYGSM 835 (884)
Q Consensus 760 k~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~--~~~~~YdL~aVinH~G~l 835 (884)
+..|+++|+||+||||||.++.. ...|+.+.|.||++.|||++++..... .....|+|+|||+|+|..
T Consensus 152 --------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~ 223 (269)
T PF00443_consen 152 --------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSA 223 (269)
T ss_dssp --------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESST
T ss_pred --------ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccccc
Confidence 33567899999999999977743 578999999999779999999876542 146899999999999999
Q ss_pred CCCeEEEEEEc-CCCCEEEEcCCcceecCcccccC---CCeEEEEE
Q 002757 836 GGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKT---SAAYVLFY 877 (884)
Q Consensus 836 ~gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~s---~~AYlLFY 877 (884)
++|||+||+|+ .+++||.|||+.|++++.++|.. ..||||||
T Consensus 224 ~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 224 DSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp TSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred ccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 99999999998 44579999999999999999988 99999999
No 24
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-44 Score=395.21 Aligned_cols=154 Identities=29% Similarity=0.473 Sum_probs=129.6
Q ss_pred CCCcCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCC---------
Q 002757 278 AGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGA--------- 348 (884)
Q Consensus 278 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~--------- 348 (884)
...+|++||.|+||+||||||+|+|+++|.|...++.. ..+-..-+......+.+++.+|+..|.++..
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~--~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~ 379 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQ--ERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSN 379 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhccc--cceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccc
Confidence 45679999999999999999999999999999988765 1111122334457899999999999987653
Q ss_pred -CCcChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCc
Q 002757 349 -APVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSI 427 (884)
Q Consensus 349 -~~i~p~~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~si 427 (884)
..|+|..||..+++-+|.|+..+||||||||+|||+.|.+-.... ...
T Consensus 380 qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~-------------------------------~~n 428 (763)
T KOG0944|consen 380 QNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS-------------------------------LPN 428 (763)
T ss_pred cCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc-------------------------------CCC
Confidence 358999999999999999999999999999999999998643210 023
Q ss_pred cccccceEEEEEEEcCCCCCeeeeecCceeEEeeCCC
Q 002757 428 IVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPS 464 (884)
Q Consensus 428 i~~lF~G~~~s~i~C~~C~~~s~~~epf~~LsLplp~ 464 (884)
+.++|...+..++.|..|++++.++++.+.+.||||.
T Consensus 429 ptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~ 465 (763)
T KOG0944|consen 429 PTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPM 465 (763)
T ss_pred HHHHHHhhhhhhhhhhccccccccchhheeeEeeccc
Confidence 8899999999999999999999999999999999984
No 25
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5e-44 Score=393.85 Aligned_cols=158 Identities=23% Similarity=0.275 Sum_probs=122.5
Q ss_pred ccccccCCCcccHHHHHHHHhCChHHHHHHHhcccccc------CCC-----CCC-----CCchHHHHHHHHHHHHHcCC
Q 002757 283 LTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREI------NHD-----NPL-----GMDGEIALAFGDLLRKLWAP 346 (884)
Q Consensus 283 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~------~~~-----n~~-----~~~~~l~~~l~~L~~~l~~~ 346 (884)
++||.|+||||||||+||||+++|+||+++++...... ... ... ....+++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999985321100 000 000 01236899999999999988
Q ss_pred CCCCcChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCC
Q 002757 347 GAAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDS 426 (884)
Q Consensus 347 ~~~~i~p~~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s 426 (884)
...++.|..+...+.. .|||||||+..||+.||++++.....+.. .+. .......+
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~----~~~------------~~~~~~~~ 136 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAG----PDT------------EDDKEQSD 136 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccC----ccc------------ccccchhh
Confidence 8899999999887642 99999999999999999999754321110 000 00123467
Q ss_pred ccccccceEEEEEEEcCCCC---CeeeeecCceeEEeeCCC
Q 002757 427 IIVDLCQGQYKSTLVCPVCK---KVSVTFDPFMYLSLPLPS 464 (884)
Q Consensus 427 ii~~lF~G~~~s~i~C~~C~---~~s~~~epf~~LsLplp~ 464 (884)
+|.++|.|+++++++|..|+ ..+.+.|+|++|+|+|+.
T Consensus 137 ~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~ 177 (343)
T cd02666 137 LIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGK 177 (343)
T ss_pred hhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCc
Confidence 89999999999999999997 889999999999999974
No 26
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-44 Score=398.63 Aligned_cols=304 Identities=28% Similarity=0.487 Sum_probs=260.9
Q ss_pred CCcCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCC-CCCchHHHHHHHHHHHHHcCCCCCCcChHHHH
Q 002757 279 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNP-LGMDGEIALAFGDLLRKLWAPGAAPVSPRTFK 357 (884)
Q Consensus 279 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~-~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 357 (884)
.+-|+|||.|-|+|||||+++|-|.++|.+++-++.-+.. .+++ ..-...+.+.++.+|..+-.+.-.++-|+.|=
T Consensus 91 pp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~---td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~W 167 (944)
T KOG1866|consen 91 PPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT---TDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFW 167 (944)
T ss_pred CCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc---ccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHH
Confidence 4569999999999999999999999999999987643322 1211 11223489999999999987777899999998
Q ss_pred HHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEE
Q 002757 358 SKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYK 437 (884)
Q Consensus 358 ~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~ 437 (884)
+.++.........+||||-||+..|||.+.|-|+..... -++...|+|.+.
T Consensus 168 k~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p-----------------------------~lf~n~f~G~ys 218 (944)
T KOG1866|consen 168 KQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHP-----------------------------QLFSNTFGGSYS 218 (944)
T ss_pred HHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCc-----------------------------HHHHHHhcCccc
Confidence 888776667788899999999999999999999865432 346778999999
Q ss_pred EEEEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEE
Q 002757 438 STLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLV 517 (884)
Q Consensus 438 s~i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 517 (884)
..-.|..|-+.-...|+|+.|+|.|.
T Consensus 219 dqKIC~~CpHRY~~eE~F~~l~l~i~------------------------------------------------------ 244 (944)
T KOG1866|consen 219 DQKICQGCPHRYECEESFTTLNLDIR------------------------------------------------------ 244 (944)
T ss_pred hhhhhccCCcccCccccceeeeeecc------------------------------------------------------
Confidence 99999999999999999999998753
Q ss_pred EEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccCh
Q 002757 518 AEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHG 597 (884)
Q Consensus 518 ~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~ 597 (884)
T Consensus 245 -------------------------------------------------------------------------------- 244 (944)
T KOG1866|consen 245 -------------------------------------------------------------------------------- 244 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccc
Q 002757 598 LDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNS 677 (884)
Q Consensus 598 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (884)
T Consensus 245 -------------------------------------------------------------------------------- 244 (944)
T KOG1866|consen 245 -------------------------------------------------------------------------------- 244 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCC
Q 002757 678 KIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCP 757 (884)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~ 757 (884)
.-+|++.|+.|.+.|.|+|.|+|+|+
T Consensus 245 ------------------------------------------------------~~nLeesLeqfv~gevlEG~nAYhCe 270 (944)
T KOG1866|consen 245 ------------------------------------------------------HQNLEESLEQFVKGEVLEGANAYHCE 270 (944)
T ss_pred ------------------------------------------------------cchHHHHHHHHHHHHHhcCcchhhhh
Confidence 01688999999999999999999999
Q ss_pred CCCCcceeEEEEEeeecCCeEEEEEeceeee--cccccccceeEecccCCCCccccccccC----------------CCC
Q 002757 758 GCKKHCQASKKLDLWRLPEILVIHLKRFSYS--RFSKNKLETYVDFPVDNLDLSTHVAHLN----------------DKL 819 (884)
Q Consensus 758 ~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~~----------------~~~ 819 (884)
+|++++...|++.|.+||++|+||||||.|+ +....|-+..+.|| ..|||.||....- ..+
T Consensus 271 KCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP-~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~ 349 (944)
T KOG1866|consen 271 KCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFP-RELDMEPYTVSGVAKLEGENVESGQQLEQSAG 349 (944)
T ss_pred hhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccc-hhhcCCceeehhhhhhccccCCcCcccccccC
Confidence 9999999999999999999999999999997 67778999999999 5999999987421 126
Q ss_pred CceEEEEEEEEeeecCCCCeEEEEEEc----CCCCEEEEcCCcceecCcccccC--------------------CCeEEE
Q 002757 820 SNRYMLYAVSNHYGSMGGGHYTAFVHH----GGGQWYDFDDSHVYPISQDKIKT--------------------SAAYVL 875 (884)
Q Consensus 820 ~~~YdL~aVinH~G~l~gGHYtAy~k~----~~~~Wy~fnDs~Vs~v~~~~v~s--------------------~~AYlL 875 (884)
+.+|+|+||+.|.|.+.+|||.+|++. ..++||+|||-.|++.+-.++.. -+||||
T Consensus 350 t~~YeLvGVlvHSGqAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYml 429 (944)
T KOG1866|consen 350 TTKYELVGVLVHSGQASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYML 429 (944)
T ss_pred cceeEEEEEEEecccccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHH
Confidence 789999999999999999999999997 56899999999999999766641 289999
Q ss_pred EEEEecCC
Q 002757 876 FYRRVVEV 883 (884)
Q Consensus 876 FY~R~~~~ 883 (884)
||+|+++.
T Consensus 430 FYer~~d~ 437 (944)
T KOG1866|consen 430 FYERMDDI 437 (944)
T ss_pred HHHHhcCC
Confidence 99999764
No 27
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4e-40 Score=348.99 Aligned_cols=142 Identities=44% Similarity=0.763 Sum_probs=126.6
Q ss_pred CCHHHHHHHhcCccccCCCCcccCCCCC--CcceeEEEEEeeecCCeEEEEEeceeeec-ccccccceeEecccCCCCcc
Q 002757 733 VSLYKCLEAFLTEEPLGPEDMWYCPGCK--KHCQASKKLDLWRLPEILVIHLKRFSYSR-FSKNKLETYVDFPVDNLDLS 809 (884)
Q Consensus 733 isL~dcL~~f~~~E~L~~~d~w~C~~Ck--~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPi~~LDls 809 (884)
.+|++||+.++..|.+.+ ..|..|+ +.+.+.++..|.++|++|+|||+||.++. +...|++..|.|| +.|++.
T Consensus 99 ~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~-~~l~~~ 174 (255)
T cd02257 99 VSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFP-LELDLS 174 (255)
T ss_pred CcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCC-CcccCc
Confidence 479999999999998876 5788898 68899999999999999999999999986 7788999999999 699999
Q ss_pred ccccc-----cCCCCCceEEEEEEEEeeec-CCCCeEEEEEEcCC-CCEEEEcCCcceecCcccc-----cCCCeEEEEE
Q 002757 810 THVAH-----LNDKLSNRYMLYAVSNHYGS-MGGGHYTAFVHHGG-GQWYDFDDSHVYPISQDKI-----KTSAAYVLFY 877 (884)
Q Consensus 810 ~~v~~-----~~~~~~~~YdL~aVinH~G~-l~gGHYtAy~k~~~-~~Wy~fnDs~Vs~v~~~~v-----~s~~AYlLFY 877 (884)
.++.. ........|+|+|||.|.|. .++|||+||+|+.. ++||.|||+.|++++.+++ ....||+|||
T Consensus 175 ~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y 254 (255)
T cd02257 175 PYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFY 254 (255)
T ss_pred cccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEEE
Confidence 98752 23336789999999999995 59999999999954 8999999999999999888 5789999999
Q ss_pred E
Q 002757 878 R 878 (884)
Q Consensus 878 ~ 878 (884)
+
T Consensus 255 ~ 255 (255)
T cd02257 255 E 255 (255)
T ss_pred C
Confidence 6
No 28
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-42 Score=379.58 Aligned_cols=296 Identities=28% Similarity=0.461 Sum_probs=248.4
Q ss_pred CcCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCcChHHHHHH
Q 002757 280 CLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSK 359 (884)
Q Consensus 280 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 359 (884)
..|++||.|.|.||||||+||+|+.+..||+.+. .+..++|.+ ...++.||+++|.+|.. ...+++..+|...
T Consensus 190 eTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy-----~ipTd~p~g-rdSValaLQr~Fynlq~-~~~PvdTteltrs 262 (1089)
T COG5077 190 ETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVY-----GIPTDHPRG-RDSVALALQRLFYNLQT-GEEPVDTTELTRS 262 (1089)
T ss_pred ceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhh-----cCCCCCCCc-cchHHHHHHHHHHHHhc-cCCCcchHHhhhh
Confidence 3599999999999999999999999999999875 344444443 46799999999999954 4588999999888
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEEEE
Q 002757 360 LARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKST 439 (884)
Q Consensus 360 l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~ 439 (884)
.+. ..+....|||.|||-..|.|.|+..++.... ..-+..+|-|.+++.
T Consensus 263 fgW--ds~dsf~QHDiqEfnrVl~DnLEksmrgt~V-----------------------------Enaln~ifVgkmksy 311 (1089)
T COG5077 263 FGW--DSDDSFMQHDIQEFNRVLQDNLEKSMRGTVV-----------------------------ENALNGIFVGKMKSY 311 (1089)
T ss_pred cCc--ccchHHHHHhHHHHHHHHHHHHHHhhcCChh-----------------------------hhHHhHHHHHHhhce
Confidence 764 3567889999999999999999975543110 012778999999999
Q ss_pred EEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEE
Q 002757 440 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 519 (884)
Q Consensus 440 i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 519 (884)
+.|-+-.+.|.+.|.|+++.|.+.
T Consensus 312 ikCvnvnyEsarvedfwdiqlNvK-------------------------------------------------------- 335 (1089)
T COG5077 312 IKCVNVNYESARVEDFWDIQLNVK-------------------------------------------------------- 335 (1089)
T ss_pred eeEEEechhhhhHHHHHHHHhccc--------------------------------------------------------
Confidence 999888887777777776665431
Q ss_pred EecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHH
Q 002757 520 IYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLD 599 (884)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~ 599 (884)
T Consensus 336 -------------------------------------------------------------------------------- 335 (1089)
T COG5077 336 -------------------------------------------------------------------------------- 335 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccc
Q 002757 600 IRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKI 679 (884)
Q Consensus 600 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (884)
T Consensus 336 -------------------------------------------------------------------------------- 335 (1089)
T COG5077 336 -------------------------------------------------------------------------------- 335 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCC
Q 002757 680 VMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGC 759 (884)
Q Consensus 680 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~C 759 (884)
..-+|+|.++.+.+.|.|+|+|.|+|..-
T Consensus 336 ---------------------------------------------------~~knLqeSfr~yIqvE~l~GdN~Y~ae~~ 364 (1089)
T COG5077 336 ---------------------------------------------------GMKNLQESFRRYIQVETLDGDNRYNAEKH 364 (1089)
T ss_pred ---------------------------------------------------chhhHHHHHHHhhhheeccCCcccccccc
Confidence 11279999999999999999999999875
Q ss_pred CCcceeEEEEEeeecCCeEEEEEeceeee--cccccccceeEecccCCCCccccccccC---CCCCceEEEEEEEEeeec
Q 002757 760 KKHCQASKKLDLWRLPEILVIHLKRFSYS--RFSKNKLETYVDFPVDNLDLSTHVAHLN---DKLSNRYMLYAVSNHYGS 834 (884)
Q Consensus 760 k~~~~A~Kk~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~~---~~~~~~YdL~aVinH~G~ 834 (884)
+ .|.|.|-.-+.++||||-++||||.|+ +.+.-||+..-+||+ .+||.||+.... ...+++|.||||.+|.|.
T Consensus 365 G-lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~-eiDl~pfld~da~ksen~d~vY~LygVlVHsGD 442 (1089)
T COG5077 365 G-LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPL-EIDLLPFLDRDADKSENSDAVYVLYGVLVHSGD 442 (1089)
T ss_pred c-chhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcc-hhccccccCchhhhhcccCcEEEEEEEEEeccc
Confidence 5 579999999999999999999999987 778889999999995 999999998532 235599999999999999
Q ss_pred CCCCeEEEEEEc-CCCCEEEEcCCcceecCcccccC----------------------CCeEEEEEEEecC
Q 002757 835 MGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKT----------------------SAAYVLFYRRVVE 882 (884)
Q Consensus 835 l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~s----------------------~~AYlLFY~R~~~ 882 (884)
+.+|||.|++|- .+|+||+|||.+|++++..+|.. -+||||.|-|++.
T Consensus 443 l~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~ 513 (1089)
T COG5077 443 LHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSM 513 (1089)
T ss_pred cCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhH
Confidence 999999999998 67999999999999999888851 2799999999864
No 29
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9e-41 Score=357.26 Aligned_cols=135 Identities=24% Similarity=0.319 Sum_probs=116.6
Q ss_pred CCHHHHHHHhcCccccCCCCcccCCCCCCcceeEEEEEeeecCC----eEEEEEeceeeec-------ccccccceeEec
Q 002757 733 VSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPE----ILVIHLKRFSYSR-------FSKNKLETYVDF 801 (884)
Q Consensus 733 isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~----iLiIhLKRF~~~~-------~~~~Ki~~~V~F 801 (884)
++|.+||+.|+++|.. +.|+|++|++++.|+|++.|+++|+ ||+||||||.+.. ....|++..|.|
T Consensus 117 ~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f 193 (268)
T cd02672 117 STFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSP 193 (268)
T ss_pred CCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecc
Confidence 5899999999999964 4589999999999999999999999 9999999999643 234588899999
Q ss_pred ccCCCCccccccccCCCCCceEEEEEEEEeeec-CCCCeEEEEEEcC-----CCCEEEEcCCcceecCcccccCCCeEEE
Q 002757 802 PVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGS-MGGGHYTAFVHHG-----GGQWYDFDDSHVYPISQDKIKTSAAYVL 875 (884)
Q Consensus 802 Pi~~LDls~~v~~~~~~~~~~YdL~aVinH~G~-l~gGHYtAy~k~~-----~~~Wy~fnDs~Vs~v~~~~v~s~~AYlL 875 (884)
|. .+|+..+...... ...+|+|+|||+|.|. .++|||+||+|.. .++||.|||..|+++++ .||||
T Consensus 194 ~~-~~~~~~~~~~~~~-~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiL 265 (268)
T cd02672 194 KA-IDHDKLVKNRGQE-SIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYIL 265 (268)
T ss_pred cc-cccchhhhccCCC-CCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheee
Confidence 94 6777666544333 6689999999999995 5999999999983 57899999999999998 89999
Q ss_pred EEE
Q 002757 876 FYR 878 (884)
Q Consensus 876 FY~ 878 (884)
||+
T Consensus 266 fY~ 268 (268)
T cd02672 266 LYQ 268 (268)
T ss_pred ecC
Confidence 995
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=366.28 Aligned_cols=147 Identities=35% Similarity=0.630 Sum_probs=135.4
Q ss_pred CHHHHHHHhcCccccCCCCcccCCCCCCcceeEEEEEeeecCCeEEEEEeceeee--cccccccceeEecccCCCCcccc
Q 002757 734 SLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYS--RFSKNKLETYVDFPVDNLDLSTH 811 (884)
Q Consensus 734 sL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~ 811 (884)
+++++|.+|.++|.|+|.|.|-|++||+++.|.|-+.|.+.|-+|.||||||.|+ ...|.|++..|.|| ..|||..|
T Consensus 215 sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp-~~l~ln~~ 293 (1203)
T KOG4598|consen 215 SVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP-DVLDLNDY 293 (1203)
T ss_pred hHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc-ccccHHHh
Confidence 7899999999999999999999999999999999999999999999999998865 66788999999999 79999999
Q ss_pred ccccCC-----------------------------------------------------------------CCCceEEEE
Q 002757 812 VAHLND-----------------------------------------------------------------KLSNRYMLY 826 (884)
Q Consensus 812 v~~~~~-----------------------------------------------------------------~~~~~YdL~ 826 (884)
+..... .++.+|+|+
T Consensus 294 in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf 373 (1203)
T KOG4598|consen 294 VNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELF 373 (1203)
T ss_pred hhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhh
Confidence 863210 068899999
Q ss_pred EEEEeeecCCCCeEEEEEEc-CCCCEEEEcCCcceecCccccc-------------CCCeEEEEEEEec
Q 002757 827 AVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIK-------------TSAAYVLFYRRVV 881 (884)
Q Consensus 827 aVinH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~-------------s~~AYlLFY~R~~ 881 (884)
||..|.|+..||||.||+|+ +.+.||+|||.+|+-+++++|. +.+||||.|||++
T Consensus 374 ~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id 442 (1203)
T KOG4598|consen 374 SVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRID 442 (1203)
T ss_pred hhheecCCCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcC
Confidence 99999999999999999999 7889999999999999999985 4589999999986
No 31
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=333.28 Aligned_cols=146 Identities=27% Similarity=0.400 Sum_probs=118.0
Q ss_pred ccccccCCCcccHHHHHHHHhCChHHHHHHHhccc-cccCCCCCCCCchHHHHHHHHHHHHHcCCCC----CCcChHHHH
Q 002757 283 LTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYF-REINHDNPLGMDGEIALAFGDLLRKLWAPGA----APVSPRTFK 357 (884)
Q Consensus 283 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~-~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~----~~i~p~~~~ 357 (884)
.+||.|+||+||+||++|.|++...+..-|....+ ...-..+|+ .++.+++.+|+..|..... ..++|..|+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~---~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk 379 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPL---ECLFCQLMKLLSKMKETPDNEYVNGISPLDFK 379 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCc---hhHHHHHHHHHhhccCCCCccccCCcChhhHH
Confidence 89999999999999999999999888766653222 222223443 7899999999999986552 568999999
Q ss_pred HHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEE
Q 002757 358 SKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYK 437 (884)
Q Consensus 358 ~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~ 437 (884)
..|+.-+|.|..++||||+|||.|||+.|.+-..... .+.|.++|..++.
T Consensus 380 ~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~~------------------------------~~~It~lf~Fe~e 429 (749)
T COG5207 380 MLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSYL------------------------------IPPITSLFEFEVE 429 (749)
T ss_pred HHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchhc------------------------------CCCcchhhhhhhc
Confidence 9999999999999999999999999999986443222 2458899999999
Q ss_pred EEEEcCCCCCeeeeecCceeEEee
Q 002757 438 STLVCPVCKKVSVTFDPFMYLSLP 461 (884)
Q Consensus 438 s~i~C~~C~~~s~~~epf~~LsLp 461 (884)
.++.|..|+.++..+++...+.++
T Consensus 430 ~rlsC~~C~~v~ySye~~~~i~i~ 453 (749)
T COG5207 430 RRLSCSGCMDVSYSYESMLMICIF 453 (749)
T ss_pred ceecccccccccccccceEEEEee
Confidence 999999999999987775544443
No 32
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.2e-35 Score=306.04 Aligned_cols=123 Identities=29% Similarity=0.474 Sum_probs=107.7
Q ss_pred CCCHHHHHHHhcCccccCCCCcccCCCCCCcceeEEEEEeeecCCeEEEEEeceeeecccccccceeEecccCCCCcccc
Q 002757 732 SVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTH 811 (884)
Q Consensus 732 ~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~ 811 (884)
.+||++||+.|++.|. |+++|+|||||||||.++.+...|+++.|.|| +.|||++|
T Consensus 79 ~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP-~~Ldl~~~ 134 (241)
T cd02670 79 GITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIP-DEIDIPDF 134 (241)
T ss_pred cCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCC-CcCCchhh
Confidence 4799999999999997 99999999999999999887778999999999 69999999
Q ss_pred ccccC---------------------CCCCceEEEEEEEEeee-cCCCCeEEEEEEcC------------CCCEEEEcCC
Q 002757 812 VAHLN---------------------DKLSNRYMLYAVSNHYG-SMGGGHYTAFVHHG------------GGQWYDFDDS 857 (884)
Q Consensus 812 v~~~~---------------------~~~~~~YdL~aVinH~G-~l~gGHYtAy~k~~------------~~~Wy~fnDs 857 (884)
+.... ......|+|+|||+|.| ++.+||||||+|+. +++||.|||+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~ 214 (241)
T cd02670 135 VADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDM 214 (241)
T ss_pred cccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCc
Confidence 86531 12457899999999999 69999999999994 3799999999
Q ss_pred cceecCcc------cccCCCeEEEEEE
Q 002757 858 HVYPISQD------KIKTSAAYVLFYR 878 (884)
Q Consensus 858 ~Vs~v~~~------~v~s~~AYlLFY~ 878 (884)
.|+.+... .+.+.+|||||||
T Consensus 215 ~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 215 ADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred ccccccccccccchhcccCCceEEEeC
Confidence 98887532 5678999999996
No 33
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=369.57 Aligned_cols=298 Identities=29% Similarity=0.396 Sum_probs=252.6
Q ss_pred cCc-cccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCcChHHHHHH
Q 002757 281 LGL-TGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSK 359 (884)
Q Consensus 281 ~g~-~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 359 (884)
.|. +||.|+||||||||+||+|+.++.||+.+.+-.. ..........+..+|+.||..|..+..++|.|..+...
T Consensus 167 tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~----~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~ 242 (1093)
T KOG1863|consen 167 TGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPP----FTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKS 242 (1093)
T ss_pred CCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCC----CCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhh
Confidence 355 9999999999999999999999999999865321 12222334569999999999999888889999999999
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEEEE
Q 002757 360 LARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKST 439 (884)
Q Consensus 360 l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~ 439 (884)
++... ..+++|||+|||+..|+|.|+..+..... ...+.++|.|.+++.
T Consensus 243 ~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~-----------------------------~~~l~~lf~g~~~~~ 291 (1093)
T KOG1863|consen 243 LGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKV-----------------------------ENTLQDLFTGKMKSV 291 (1093)
T ss_pred hhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhh-----------------------------hhhhhhhhcCCcceE
Confidence 98765 56779999999999999999987754321 234889999999999
Q ss_pred EEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEE
Q 002757 440 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 519 (884)
Q Consensus 440 i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 519 (884)
+.|..|+..+.+.+.|+++.|++-
T Consensus 292 i~c~~~~~~s~r~e~f~d~ql~~~-------------------------------------------------------- 315 (1093)
T KOG1863|consen 292 IKCIDVDFESSRSESFLDLQLNGK-------------------------------------------------------- 315 (1093)
T ss_pred EEEEeeeeeccccccccCcccccc--------------------------------------------------------
Confidence 999999999988888887776642
Q ss_pred EecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHH
Q 002757 520 IYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLD 599 (884)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~ 599 (884)
T Consensus 316 -------------------------------------------------------------------------------- 315 (1093)
T KOG1863|consen 316 -------------------------------------------------------------------------------- 315 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCcccccc
Q 002757 600 IRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKI 679 (884)
Q Consensus 600 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (884)
T Consensus 316 -------------------------------------------------------------------------------- 315 (1093)
T KOG1863|consen 316 -------------------------------------------------------------------------------- 315 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCC
Q 002757 680 VMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGC 759 (884)
Q Consensus 680 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~C 759 (884)
+.-+|.++|+.|+..|.|.+++. ||..|
T Consensus 316 ---------------------------------------------------g~~nl~~sf~~y~~~E~l~gdn~-~~~~~ 343 (1093)
T KOG1863|consen 316 ---------------------------------------------------GVKNLEDSLHLYFEAEILLGDNK-YDAEC 343 (1093)
T ss_pred ---------------------------------------------------chhhHHHHHHHhhhHHHhcCCcc-ccccc
Confidence 01258899999999999999998 99999
Q ss_pred CCcceeEEEEEeeecCCeEEEEEeceeee--cccccccceeEecccCCCCcccccccc--C-CCCCceEEEEEEEEeeec
Q 002757 760 KKHCQASKKLDLWRLPEILVIHLKRFSYS--RFSKNKLETYVDFPVDNLDLSTHVAHL--N-DKLSNRYMLYAVSNHYGS 834 (884)
Q Consensus 760 k~~~~A~Kk~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPi~~LDls~~v~~~--~-~~~~~~YdL~aVinH~G~ 834 (884)
...+.|.|.+.+-+||+||.|||+||.|+ +....||+....|| ..|+|.+|+..+ . ....++|+|+||..|.|.
T Consensus 344 ~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp-~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~ 422 (1093)
T KOG1863|consen 344 HGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFP-LIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGD 422 (1093)
T ss_pred cchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCc-cccccchhccccchhhhhccceeccchhhccccc
Confidence 99999999999999999999999999997 56778999999999 599999998741 1 113369999999999889
Q ss_pred CCCCeEEEEEEc-CCCCEEEEcCCcceecCcccccC----------------CCeEEEEEEEecC
Q 002757 835 MGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKT----------------SAAYVLFYRRVVE 882 (884)
Q Consensus 835 l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~s----------------~~AYlLFY~R~~~ 882 (884)
..+|||++|++. ..++|++|||..|+.+++.++.. +.||+|+|-|.+.
T Consensus 423 ~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~ 487 (1093)
T KOG1863|consen 423 AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSC 487 (1093)
T ss_pred ccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCc
Confidence 999999999997 67899999999999999776641 1289999999864
No 34
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-34 Score=327.13 Aligned_cols=331 Identities=28% Similarity=0.434 Sum_probs=251.5
Q ss_pred CCcCccccccCCCcccHH--HHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCC--CCCcChH
Q 002757 279 GCLGLTGLQNLGNTCFMN--SALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPG--AAPVSPR 354 (884)
Q Consensus 279 ~~~g~~GL~NlGNTCYmN--SvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p~ 354 (884)
.....-|..|.+++|+.| ++.|.+..+.+++........ ......+....+...+..++...-... ...+.|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~ 304 (587)
T KOG1864|consen 228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLT---SLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPT 304 (587)
T ss_pred ccccccCccccCccccccchhhHHHHHhhhhhcccccchhh---cccchhhhhHHHHHHhhhhccchhhhcccccccCcc
Confidence 345778999999999999 999999988888754432111 111111223444445555544443222 2568999
Q ss_pred HHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCcccc--CCCCCChHHHHHHHH--HHhhccCCCcccc
Q 002757 355 TFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAK--DGDGRSDEDIADEYW--QNHLARNDSIIVD 430 (884)
Q Consensus 355 ~~~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~--~~~~~~~~~~a~~~w--~~~~~~~~sii~~ 430 (884)
.|...+.+....|..+.|||||||+.++++.++|.+.+.......... .++|..... +...| ..+......++++
T Consensus 305 ~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~-~~~~~~~~~~~~~~~~~v~~ 383 (587)
T KOG1864|consen 305 RFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTS-AASWTNKGHHKSLRENWVSK 383 (587)
T ss_pred hhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccc-cccccccccccccchhHHHH
Confidence 999999999999999999999999999999999887765422211111 112211110 00001 1344456678999
Q ss_pred ccceEEEEEEEcCCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCC
Q 002757 431 LCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALG 510 (884)
Q Consensus 431 lF~G~~~s~i~C~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~ 510 (884)
+|.|++..+..|..|+.++.+.+.|.+++++++..
T Consensus 384 lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~d--------------------------------------------- 418 (587)
T KOG1864|consen 384 LFQGILTNETRCLSCETITSRDEGFLDLSVAVEID--------------------------------------------- 418 (587)
T ss_pred hhcCeeeeeeeeccccccccccccccccceecccc---------------------------------------------
Confidence 99999999999999999999999999998887621
Q ss_pred CCceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEE
Q 002757 511 VNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAK 590 (884)
Q Consensus 511 ~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~ 590 (884)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccChHHHHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecC
Q 002757 591 VSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDE 670 (884)
Q Consensus 591 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (884)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCC
Q 002757 671 KGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGP 750 (884)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~ 750 (884)
+..++..||+.|.++|.|.+
T Consensus 419 ------------------------------------------------------------e~~si~~~l~~~~~~e~l~g 438 (587)
T KOG1864|consen 419 ------------------------------------------------------------ENTSITNLLKSFSSTETLSG 438 (587)
T ss_pred ------------------------------------------------------------ccccHHHHHHHhcchhhccC
Confidence 12378899999999999999
Q ss_pred CCcccCCCCCCcceeEEEEEeeecCCeEEEEEeceeeecc--cccccceeEecccCCCCccccccccCCCCCceEEEEEE
Q 002757 751 EDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF--SKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAV 828 (884)
Q Consensus 751 ~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aV 828 (884)
+++++|++|...|.|.|.+.+.++|.+|+||||||.|.+. ...|+...|.||+ .|.+...+..... +...|+|+||
T Consensus 439 ~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~pl-el~l~~~~~~~~~-~~~~Y~L~av 516 (587)
T KOG1864|consen 439 ENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPL-ELRLKDTLKDDNN-PDRKYDLVAV 516 (587)
T ss_pred CCcccccccCchhhHHHhccccCCcceeeeehhcccccccccccccccccccccc-ceeeccccccccC-ccceeeEEEE
Confidence 9999999999999999999999999999999999999853 2469999999996 7887665554332 3479999999
Q ss_pred EEeee-cCCCCeEEEEEEcCCCCEEEEcCCcceecCccccc---CCCeEEEEEEEe
Q 002757 829 SNHYG-SMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIK---TSAAYVLFYRRV 880 (884)
Q Consensus 829 inH~G-~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~v~~~~v~---s~~AYlLFY~R~ 880 (884)
|+|.| ++..|||+||+|..+..|++|||..|..++++.|. ....|++||.+.
T Consensus 517 VvH~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~ 572 (587)
T KOG1864|consen 517 VVHLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYVQ 572 (587)
T ss_pred EEeccCCCCCcceEEEEeeCCCCceecccccccccCcchhhhccCCCccceeeeEE
Confidence 99999 99999999999995455999999999999988875 456777777654
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.97 E-value=4.1e-30 Score=281.30 Aligned_cols=284 Identities=26% Similarity=0.375 Sum_probs=233.9
Q ss_pred cccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHc-CCCCCCcChHHHHHHHhh
Q 002757 284 TGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLW-APGAAPVSPRTFKSKLAR 362 (884)
Q Consensus 284 ~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~-~~~~~~i~p~~~~~~l~~ 362 (884)
.||.|.+++||+||+||+|+++|++++.+++.. . + ....+|+++|+-||.+|. .+....+.+..|.++++.
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~-----c--~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~ 72 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E-----C--PKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSW 72 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C-----C--CccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhc
Confidence 599999999999999999999999999998654 1 1 224789999999999998 777788999999999988
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceEEEEEEEc
Q 002757 363 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKSTLVC 442 (884)
Q Consensus 363 ~~~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C 442 (884)
......-+.|+|.++|..|||+.|+.++............ .......+.|.++|+.......+|
T Consensus 73 ~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~~~f~~~~~~~~~c 136 (295)
T PF13423_consen 73 IPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSE----------------NSSSSPESSISQLFGTSFETTIRC 136 (295)
T ss_pred CHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccc----------------cccCCCcchHHHHhCcceeeeecc
Confidence 7544556679999999999999999998776543211000 011223466999999999999999
Q ss_pred CCCCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEec
Q 002757 443 PVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYN 522 (884)
Q Consensus 443 ~~C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 522 (884)
..|++.+.+.++...+.|+.|...
T Consensus 137 ~~c~~~~~~~~~~~~~~l~yp~~~-------------------------------------------------------- 160 (295)
T PF13423_consen 137 TSCGHESVKESSTLVLDLPYPPSN-------------------------------------------------------- 160 (295)
T ss_pred cccCCeEEeecceeeeeccCCCCC--------------------------------------------------------
Confidence 999999988887766666655210
Q ss_pred ceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHHH
Q 002757 523 HQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIRN 602 (884)
Q Consensus 523 ~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~i~~ 602 (884)
T Consensus 161 -------------------------------------------------------------------------------- 160 (295)
T PF13423_consen 161 -------------------------------------------------------------------------------- 160 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEecCCCCccccccccC
Q 002757 603 LYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKIVMN 682 (884)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (884)
T Consensus 161 -------------------------------------------------------------------------------- 160 (295)
T PF13423_consen 161 -------------------------------------------------------------------------------- 160 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCccccCCCCcccCCCCCCc
Q 002757 683 EPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGCKKH 762 (884)
Q Consensus 683 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~ 762 (884)
..+++.++|+..+..|.... ..|++|++.
T Consensus 161 ------------------------------------------------~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~ 189 (295)
T PF13423_consen 161 ------------------------------------------------SNVTFSQVLEHSLNREQQTR---AWCEKCNKY 189 (295)
T ss_pred ------------------------------------------------ccchHHHHHHHHHhhccccc---ccccccccc
Confidence 13478889999888888765 799999999
Q ss_pred ceeEEEEEeeecCCeEEEEEeceeeecccccccceeEecccCCCCccccccccC------CCCCceEEEEEEEEeee-cC
Q 002757 763 CQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLN------DKLSNRYMLYAVSNHYG-SM 835 (884)
Q Consensus 763 ~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~------~~~~~~YdL~aVinH~G-~l 835 (884)
+.+..+..|.++|+||.|.++|......+..|....+.+|. .+++..++.... .....+|+|.|+|+|.| +.
T Consensus 190 ~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~-~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~ 268 (295)
T PF13423_consen 190 QPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPP-SINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSI 268 (295)
T ss_pred cceeeeeeccCCCcEEEEEccCCCcccccccccCCceecce-eeeccccccccccccccCCCCceEEEEEEEEEEecCCC
Confidence 99999999999999999999999998667889999999995 799999886532 34778999999999999 69
Q ss_pred CCCeEEEEEEcC---CCCEEEEcCCcc
Q 002757 836 GGGHYTAFVHHG---GGQWYDFDDSHV 859 (884)
Q Consensus 836 ~gGHYtAy~k~~---~~~Wy~fnDs~V 859 (884)
.+|||+||+|.. +.+||.|||-.|
T Consensus 269 ~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 269 ESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred CCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 999999999993 469999999765
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.8e-29 Score=263.69 Aligned_cols=122 Identities=28% Similarity=0.455 Sum_probs=102.8
Q ss_pred CCCcceeEEEEEeeecCCeEEEEEeceeee-cccccccceeEecccCCCCccccccc-----cCCCCCceEEEEEEEEee
Q 002757 759 CKKHCQASKKLDLWRLPEILVIHLKRFSYS-RFSKNKLETYVDFPVDNLDLSTHVAH-----LNDKLSNRYMLYAVSNHY 832 (884)
Q Consensus 759 Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~v~~-----~~~~~~~~YdL~aVinH~ 832 (884)
-+..+.|.+++.|.++|++|++|||||.|. .+...|+.+.++||. .|.++.-+.. +.......|+|.||+-|.
T Consensus 287 s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~-~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyht 365 (420)
T KOG1871|consen 287 SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPW-TLKISKNCFSQGLKIRILIATRPYKSLAVVYHT 365 (420)
T ss_pred CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccc-eeeechhhhccccchhhhccccccceEEEEEec
Confidence 455567899999999999999999999998 566789999999994 7777665442 222245679999999999
Q ss_pred e-cCCCCeEEEEEEc-CCCCEEEEcCCcceecCccccc----CCCeEEEEEEEec
Q 002757 833 G-SMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIK----TSAAYVLFYRRVV 881 (884)
Q Consensus 833 G-~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~----s~~AYlLFY~R~~ 881 (884)
| +..+|||++-+.+ .-+.|+.+||..|..+..++|. +..||+|.|+|.+
T Consensus 366 gtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 366 GTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD 420 (420)
T ss_pred ccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence 9 8999999999998 6678999999999999999886 4589999999864
No 37
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.96 E-value=7.3e-29 Score=260.03 Aligned_cols=304 Identities=28% Similarity=0.463 Sum_probs=240.4
Q ss_pred CCCCCcCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCC--CCcCh
Q 002757 276 GEAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGA--APVSP 353 (884)
Q Consensus 276 ~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~--~~i~p 353 (884)
.....+|.+||.|+-++-|.|++||.|+|++|+|+||+.. .|+....+.+...|+.|++++|+++. ..++|
T Consensus 127 ~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~-------~n~~d~~~~lv~rl~~l~rklw~~r~fk~hvSp 199 (442)
T KOG2026|consen 127 GSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLE-------ENYFDNLTELVQRLGELIRKLWNPRNFKGHVSP 199 (442)
T ss_pred CCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccc-------ccccchhHHHHHHHHHHHHHhcChhhhcccCCH
Confidence 3457899999999999999999999999999999999742 22444568999999999999999885 78999
Q ss_pred HHHHHHHhhhC-CCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCcccccc
Q 002757 354 RTFKSKLARFA-PQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLC 432 (884)
Q Consensus 354 ~~~~~~l~~~~-~~F~~~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF 432 (884)
.+|.+++.... ..|..++|-|+-|||+|||+.||.+++..++ ..|||++.|
T Consensus 200 he~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~----------------------------~~SIi~~~f 251 (442)
T KOG2026|consen 200 HEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKK----------------------------ASSIIHKSF 251 (442)
T ss_pred HHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCC----------------------------chhHhhHhh
Confidence 99999986654 4799999999999999999999999986542 258999999
Q ss_pred ceEEEEEEEcCC----CCCeeeeecCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhc
Q 002757 433 QGQYKSTLVCPV----CKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACA 508 (884)
Q Consensus 433 ~G~~~s~i~C~~----C~~~s~~~epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~ 508 (884)
+|.++....-.. --...+..-||++|+|.||....
T Consensus 252 qG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~pl----------------------------------------- 290 (442)
T KOG2026|consen 252 QGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPL----------------------------------------- 290 (442)
T ss_pred cceEEeeeeccccccccccceEEEEeeEEEEecCCCCCc-----------------------------------------
Confidence 999987654433 22344667799999999996421
Q ss_pred CCCCceEEEEEEecceeEEcccCCcccccccCCCCcEEEEEecCCCCCCCeEEEEeehhhhhhhcCCcCCCCcccCccEE
Q 002757 509 LGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLV 588 (884)
Q Consensus 509 ~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~ 588 (884)
|.|-
T Consensus 291 --------------------fkD~-------------------------------------------------------- 294 (442)
T KOG2026|consen 291 --------------------FKDV-------------------------------------------------------- 294 (442)
T ss_pred --------------------ccch--------------------------------------------------------
Confidence 0000
Q ss_pred EEeccccChHHHHHHHHHHcCCcccCccccCCCCcCCCCchhhhhhccccccccCCCCCCCCCCCCCCCCCCCceeEEEe
Q 002757 589 AKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLT 668 (884)
Q Consensus 589 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (884)
T Consensus 295 -------------------------------------------------------------------------------- 294 (442)
T KOG2026|consen 295 -------------------------------------------------------------------------------- 294 (442)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccccCcccccCCCCCceEEEEEecchhhhhhccccccccccccccCCCCCCCCCCCCHHHHHHHhcCcccc
Q 002757 669 DEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPL 748 (884)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isL~dcL~~f~~~E~L 748 (884)
+... .+ ..+.|.+.|..|..+-.-
T Consensus 295 ------------~e~n------------------------------ii--------------PQV~l~~lL~Kf~g~t~~ 318 (442)
T KOG2026|consen 295 ------------MEKN------------------------------II--------------PQVALFDLLKKFDGETVT 318 (442)
T ss_pred ------------hhhc------------------------------cc--------------ccchHHHHHHHhcCceee
Confidence 0000 01 235788888888754322
Q ss_pred CCCCcccCCCCCCcceeEEEEEeeecCCeEEEEEeceeeecccccccceeEecccCCCCccccccc---cCCCCCceEEE
Q 002757 749 GPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAH---LNDKLSNRYML 825 (884)
Q Consensus 749 ~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~---~~~~~~~~YdL 825 (884)
+- .....| +++.+.++|++||+|+|||.-+.++.+|+.|.|+||+..+|+.+.... ... .-..|+|
T Consensus 319 e~---------~~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~ 387 (442)
T KOG2026|consen 319 EV---------VTPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNH-KVTQYSL 387 (442)
T ss_pred ee---------cchhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccC-ccccccc
Confidence 10 111234 899999999999999999999999999999999999878888776542 223 3378999
Q ss_pred EEEEEeeecCCCCeEEEEEEc-CCCCEEEEcCCcceecCcccccCCCeEEEEEEEe
Q 002757 826 YAVSNHYGSMGGGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRV 880 (884)
Q Consensus 826 ~aVinH~G~l~gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~s~~AYlLFY~R~ 880 (884)
.|-+.|- -.-|||...+++ ..++||..+|-+|++..++-|.-+++||-.|+|.
T Consensus 388 ~~N~i~~--~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 388 VANAIHE--DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred hhhhhcC--cccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 9988886 778999999998 7799999999999999999999999999888864
No 38
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.4e-26 Score=249.06 Aligned_cols=150 Identities=24% Similarity=0.290 Sum_probs=113.1
Q ss_pred CccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCcChHHHHHHHh
Q 002757 282 GLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSKLA 361 (884)
Q Consensus 282 g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~ 361 (884)
=++||.|+|||||||+.+|||-.+|++...+... ......+..+.....+..+++.+|+.|... .++.|..+...+.
T Consensus 104 lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~-~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl~ 180 (473)
T KOG1872|consen 104 LPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLY-KRKRGRGDTWERRRRISIETRTCFRPLCEK--GAVAPINLLQTLS 180 (473)
T ss_pred CCccccchhHHHHhhhhhhhhhcCccCcchhhcc-chhccCCchhhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHHH
Confidence 4579999999999999999999999999877532 111122223333567889999999999766 8999999999999
Q ss_pred hhCCCCCC------CCCCCHHHHHHHHHHHHHHHhhhccCCCCccccCCCCCChHHHHHHHHHHhhccCCCccccccceE
Q 002757 362 RFAPQFSG------FNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQ 435 (884)
Q Consensus 362 ~~~~~F~~------~~QqDA~EfL~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~ 435 (884)
+..|+|.- +.||||.|+...++-.+|+-+......+ .+.+.+..+|.++
T Consensus 181 ~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~-------------------------~~~~~~d~~f~~~ 235 (473)
T KOG1872|consen 181 SQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP-------------------------CLEAEAAAGFGAE 235 (473)
T ss_pred HHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc-------------------------chhHHHHHhhccc
Confidence 99999986 9999999999999999997664322111 2345678889999
Q ss_pred EEEEEEcCCCCCeeee--ecCceeEE
Q 002757 436 YKSTLVCPVCKKVSVT--FDPFMYLS 459 (884)
Q Consensus 436 ~~s~i~C~~C~~~s~~--~epf~~Ls 459 (884)
+..+..|..-...... .|.|..|+
T Consensus 236 ~~~t~~~~e~e~~~~~~~~E~~~~L~ 261 (473)
T KOG1872|consen 236 FSTTMSCSEGEDEGGGAGRELVDQLK 261 (473)
T ss_pred cccceeeccCcccccccccccccccc
Confidence 9999999876554433 34444333
No 39
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=99.82 E-value=1.5e-20 Score=171.24 Aligned_cols=98 Identities=22% Similarity=0.317 Sum_probs=61.5
Q ss_pred CCeEEEEchHHHHHHHHhcCCCCccccccccccCCCCCCCCCCCCCCcccChhhccccccchhc-ccccCCcccCCCCCC
Q 002757 30 DQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEV-SLQNGENGEVGVSGR 108 (884)
Q Consensus 30 g~~~ylIs~~W~~~w~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pg~IdNs~L~~~~~~~~~~-~~~~~~l~~~l~e~~ 108 (884)
||.|||||++||++|+.||.++..+... ......+||||||++|+......... ......||++|.++.
T Consensus 1 G~~~ylIs~~W~~~W~~~v~~~~~~~~~----------~~~~~~~pGpIdN~~L~~~~~~~~~~~~~~~~~Lk~~l~~~~ 70 (99)
T PF06337_consen 1 GDKWYLISSKWWRQWKSYVSYDNNDNES----------DPDSSPRPGPIDNSDLLDEDNSQLQFPPPENYRLKPNLQEGV 70 (99)
T ss_dssp T-EEEEEEHHHHHHHHHHHTTTTTSTTT----------TT-GGG---SB-GGGGECCTTT---------TEE-SS--CTT
T ss_pred CCEEEEECHHHHHHHHHHhCCCCccccc----------ccccCCCCCCEeCHHHhCCCCcccccchhhhhhccccccCCC
Confidence 8999999999999999999975443210 00114569999999999742111000 001247999999999
Q ss_pred CEEEeCHHHHHHHHHHcCCCCcceEEeec
Q 002757 109 DYALVPGEMWLQALKWHSDTKVAAKNRKS 137 (884)
Q Consensus 109 dy~~vp~~~w~~l~~wYG~~~~i~R~Vi~ 137 (884)
||++||+++|++|.+||||||+|+|.|+.
T Consensus 71 Dy~~v~~~~W~~l~~~Ygggp~I~R~vi~ 99 (99)
T PF06337_consen 71 DYELVPEEVWDYLHSWYGGGPEIKRQVIN 99 (99)
T ss_dssp TEEEEEHHHHHHHHHHH-T----EEEEE-
T ss_pred CEEEECHHHHHHHHHHcCCCCcEEEEeeC
Confidence 99999999999999999999999999983
No 40
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=99.77 E-value=9.8e-19 Score=154.70 Aligned_cols=83 Identities=23% Similarity=0.378 Sum_probs=72.3
Q ss_pred CCCCeEEEEchHHHHHHHHhcCCCCccccccccccCCCCCCCCCCCCCCcccChhhccccccchhcccccCCcccCCCCC
Q 002757 28 DNDQRVYLVPYRWWRDAQESTSSDSDKKRGVLYTATQGTSYGGPMKIINNIFNSDLVFNLRREEEVSLQNGENGEVGVSG 107 (884)
Q Consensus 28 ~~g~~~ylIs~~W~~~w~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pg~IdNs~L~~~~~~~~~~~~~~~~l~~~l~e~ 107 (884)
++|+.||+|+++||++|+.|+.. .....||||||++|+... . ...|+.++.++
T Consensus 2 ~~g~~~yiIs~~W~~~~~~~~~~-------------------~~~~~pGpIdN~~l~~~~----~----~~~lk~~l~~~ 54 (86)
T smart00695 2 REGDTWYLISTRWYRQWADFVEG-------------------KDGKDPGPIDNSGILCSH----G----GPRLKEHLVEG 54 (86)
T ss_pred CCCCEEEEEeHHHHHHHHHHhCC-------------------CCCCCCCCCCcHHhcCCC----C----CcccccccccC
Confidence 58999999999999999999982 124679999999999731 0 23799999999
Q ss_pred CCEEEeCHHHHHHHHHHcCCCC-cceEEeec
Q 002757 108 RDYALVPGEMWLQALKWHSDTK-VAAKNRKS 137 (884)
Q Consensus 108 ~dy~~vp~~~w~~l~~wYG~~~-~i~R~Vi~ 137 (884)
.||++||+++|++|.+||||+| +|.|.|+.
T Consensus 55 ~dy~~V~~~vW~~l~~~YGggp~~i~R~~i~ 85 (86)
T smart00695 55 EDYVLIPEELWNKLVSWYGGGPGPIPRKVVC 85 (86)
T ss_pred CCEEEeCHHHHHHHHHHHCCCCccceEEeec
Confidence 9999999999999999999999 69999984
No 41
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=99.49 E-value=8.5e-14 Score=119.78 Aligned_cols=83 Identities=23% Similarity=0.265 Sum_probs=67.1
Q ss_pred EEEEEecc---CCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 153 LRLSVMRE---TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 153 l~l~~~~~---~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
|++|...+ ++..+.+||+.+||..+.+++|++|+| .+++|||.+++.+.++.|.+.+.||++|+|..||.|++|.+
T Consensus 2 ~kLC~~~~~~l~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~r 80 (88)
T PF14836_consen 2 LKLCVPSNVDLQSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEER 80 (88)
T ss_dssp EEEEETTE--CCEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE-
T ss_pred ceeccCCCcccccHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEee
Confidence 67787665 567899999999999999999999999 77899999999999999999999999999999999999999
Q ss_pred -ecCccCc
Q 002757 230 -IYGLSDS 236 (884)
Q Consensus 230 -~~~~w~~ 236 (884)
.||+||+
T Consensus 81 n~DGtWPr 88 (88)
T PF14836_consen 81 NEDGTWPR 88 (88)
T ss_dssp -TTS--TT
T ss_pred ccCCCCCC
Confidence 5999985
No 42
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.47 E-value=3e-13 Score=155.88 Aligned_cols=123 Identities=23% Similarity=0.316 Sum_probs=96.7
Q ss_pred ccCCCCCCcceeEEEEEeeecCCeEEEEEeceeee--cccc--cccceeEecccCCCCcccccc----------cc----
Q 002757 754 WYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYS--RFSK--NKLETYVDFPVDNLDLSTHVA----------HL---- 815 (884)
Q Consensus 754 w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~--~~~~--~Ki~~~V~FPi~~LDls~~v~----------~~---- 815 (884)
-.|+.|++++..+.+..+-.||++|.|...-+... .+++ .|.-..|.+| +.+-|..-=. ..
T Consensus 702 ~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP-~~~~~~~~k~~~~~v~~~s~~~~~~~ 780 (1118)
T KOG1275|consen 702 AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLP-EWFHMIISKNKAQLVSTISDLDVSPL 780 (1118)
T ss_pred cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccc-hheeEEEecccceeeeeeccccCCCC
Confidence 37999999999999999999999999998887653 3333 3556778888 4666543210 00
Q ss_pred ---CCCCCceEEEEEEEEeee-cCCCCeEEEEEEc---------CCCCEEEEcCCcceecCcccccC-----CCeEEEEE
Q 002757 816 ---NDKLSNRYMLYAVSNHYG-SMGGGHYTAFVHH---------GGGQWYDFDDSHVYPISQDKIKT-----SAAYVLFY 877 (884)
Q Consensus 816 ---~~~~~~~YdL~aVinH~G-~l~gGHYtAy~k~---------~~~~Wy~fnDs~Vs~v~~~~v~s-----~~AYlLFY 877 (884)
+...-.+|+|-|+|.|.| +-..+|.++++|. .+.+||.|||-.|+++++++.+. +-+-||+|
T Consensus 781 ~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 781 PDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred ccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 011338899999999999 7799999999997 24699999999999999888763 57899999
No 43
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=98.06 E-value=3e-05 Score=80.63 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=88.6
Q ss_pred CceeEEeeCCCC---cceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCC--CceEEEEEEecceeEEc
Q 002757 454 PFMYLSLPLPST---TVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGV--NETLLVAEIYNHQIIRY 528 (884)
Q Consensus 454 pf~~LsLplp~~---~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~--~~~l~~~e~~~~~~~~~ 528 (884)
++.+--|++|.. +.+.++|+++..... .--.+.+.+||++++.||++++.+.+++.. ...+.+.++++++|+++
T Consensus 2 ~l~YevL~i~l~ElE~kk~~kv~w~~~~~~-~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~ 80 (213)
T PF14533_consen 2 TLYYEVLDIPLKELENKKQFKVTWLNDGLK-EEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKI 80 (213)
T ss_dssp EEEEEE-SS-HHHHHSB--EEEEEE-TTS--EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEE
T ss_pred ceEEEecCCCHHHHhCceEEEEEEECCCCc-ceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEee
Confidence 455666777763 566777777754322 224688999999999999999999998865 35899999999999999
Q ss_pred ccCCcccccccCCCCcEEEEEecCCCC-------CCCeEEEEeehhhhhhhcCCcCCCCcccCccEEEEeccccChHHHH
Q 002757 529 LEEPADSISLIRDDDQLVAYRLRKEND-------KDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLDIR 601 (884)
Q Consensus 529 ~~~~~~~~~~i~~~d~i~~ye~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~i~ 601 (884)
+. +..++..|.+...+.+-++|.... ....+++.|-.. .....||+||++.+..+-+-.++.
T Consensus 81 ~~-~d~~i~~l~~~~~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k----------~~~~~hGiPF~f~v~~gE~f~~tK 149 (213)
T PF14533_consen 81 LS-EDEPISSLNDYITLRIEEIPEEELNLDDESEGEKLIPVFHFHK----------DPSRTHGIPFLFVVKPGETFSDTK 149 (213)
T ss_dssp E--TTSBGGGS--TTEEEEEE--GGGSS--TT--TEEEEEEEEESS----------STT-EEEEEEEEEEETT--HHHHH
T ss_pred cC-CCCchhhccCcceeeeecCChHHhhcccccccceEEEEEEEec----------CccccCCCCEEEEeeCCCcHHHHH
Confidence 98 777888886666677888887532 235577777432 123789999999997777777777
Q ss_pred HHHHHHc
Q 002757 602 NLYLELL 608 (884)
Q Consensus 602 ~~~~~~~ 608 (884)
+.+.+++
T Consensus 150 ~Rl~~rl 156 (213)
T PF14533_consen 150 ERLQKRL 156 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777666
No 44
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0032 Score=74.39 Aligned_cols=104 Identities=21% Similarity=0.237 Sum_probs=58.1
Q ss_pred cccCCCcccHHHHHHHHhCChHHHHHHHhccc----------cccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCc--Ch
Q 002757 286 LQNLGNTCFMNSALQCLVHTPKLVDYFLGDYF----------REINHDNPLGMDGEIALAFGDLLRKLWAPGAAPV--SP 353 (884)
Q Consensus 286 L~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~----------~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i--~p 353 (884)
|.|.|||||.||+||||..+|+|+--+...+. ...+.............+....+... ......+ +-
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 112 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV 112 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence 99999999999999999999999977753211 11111111111112222222222222 1111122 22
Q ss_pred HHHHHHH---hhhCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q 002757 354 RTFKSKL---ARFAPQFSGFNQHDSQELLAFLLDGLHEDL 390 (884)
Q Consensus 354 ~~~~~~l---~~~~~~F~~~~QqDA~EfL~~LLd~L~eel 390 (884)
..+...+ .+....|....|+||++|+.-|+-.+..-+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 2222222 233446888899999999998876665433
No 45
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=96.30 E-value=0.0033 Score=65.01 Aligned_cols=81 Identities=17% Similarity=0.381 Sum_probs=59.4
Q ss_pred cCCCCCCcceeEEEEEeeecCCeEEEEEeceeeecccccccceeEecccCCCCccccccccCCCCCceEEEEEEEEeeec
Q 002757 755 YCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGS 834 (884)
Q Consensus 755 ~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~v~~~~~~~~~~YdL~aVinH~G~ 834 (884)
-|.+|+.+. ..++|-+.++|+|+++|+- .+-..+.-..-+|-+ +...|.+-+||--.-.
T Consensus 172 pCn~C~~ks-Q~rkMvlekv~~vfmLHFV-----eGLP~ndl~~ysF~f---------------eg~~Y~Vt~VIQY~~~ 230 (275)
T PF15499_consen 172 PCNSCNSKS-QRRKMVLEKVPPVFMLHFV-----EGLPHNDLQHYSFHF---------------EGCLYQVTSVIQYQAN 230 (275)
T ss_pred CCcccCChH-HhHhhhhhcCchhhhhhhh-----ccCCccCCCccceee---------------cCeeEEEEEEEEEecc
Confidence 699999874 4678999999999999964 122121111222222 5678999999976544
Q ss_pred CCCCeEEEEEEcCCCCEEEEcCCc
Q 002757 835 MGGGHYTAFVHHGGGQWYDFDDSH 858 (884)
Q Consensus 835 l~gGHYtAy~k~~~~~Wy~fnDs~ 858 (884)
.-|+++++++.+|.|..+||-.
T Consensus 231 --~~HFvtWi~~~dGsWLecDDLk 252 (275)
T PF15499_consen 231 --LNHFVTWIRDSDGSWLECDDLK 252 (275)
T ss_pred --CceeEEEEEcCCCCeEeeccCC
Confidence 6799999999889999999965
No 46
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=95.40 E-value=0.15 Score=45.01 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=53.1
Q ss_pred eeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEe--cCCcceeeccCCCccchhhccCCCceEEEE
Q 002757 163 SLGVKISKKDNAVELFKRACKIFSIESELLHIWDF--SGQTTLYFLNDKNKFSKDCLRLSDHEILLE 227 (884)
Q Consensus 163 ~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~--~~~~~~~~L~~~~~tl~~~~l~~~q~illE 227 (884)
.....+++..|+.+|+.++-.++++++...||-.+ .+......+.+..++|..+++.+|..|.+.
T Consensus 15 ~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 15 SVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 67899999999999999999999999998888776 344555567777889999999999777665
No 47
>PTZ00044 ubiquitin; Provisional
Probab=94.83 E-value=0.14 Score=43.71 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=54.7
Q ss_pred ccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEe
Q 002757 159 RETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQI 230 (884)
Q Consensus 159 ~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~~ 230 (884)
.++...++.++..+||.+|+.++....+++.++.||| +.+. .|++ +.+|.++++..+..|.+-++.
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~----~L~d-~~~l~~~~i~~~~~i~l~~~~ 73 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YSGK----QMSD-DLKLSDYKVVPGSTIHMVLQL 73 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECCE----EccC-CCcHHHcCCCCCCEEEEEEEc
Confidence 3566788999999999999999999999999999999 5433 3554 567999999999888887763
No 48
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=94.26 E-value=0.21 Score=42.57 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=52.6
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
++...++.++..+|+.+|+++++...+++.++.||+ +.+ ..|++ +.+|.++++..+..|.+-++
T Consensus 9 ~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~~G----~~L~d-~~~L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 9 QGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLL-FKG----KALAD-DKRLSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECC----EECCC-CCCHHHCCCCCCCEEEEEEc
Confidence 456678899999999999999999999999999998 433 23555 57899999999988876554
No 49
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=94.03 E-value=0.21 Score=42.17 Aligned_cols=62 Identities=8% Similarity=0.004 Sum_probs=51.2
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 226 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~ill 226 (884)
.+....+.++..+|+.+|+.++....+++.++.|||. .+ ..|++...+|+++++..+..|+|
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~-~G----k~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIY-NG----RELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE-CC----eEccCCcccHHHcCCCCCCEEEE
Confidence 4556789999999999999999999999999999993 22 34566557899999999888776
No 50
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=93.60 E-value=0.27 Score=42.07 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=47.6
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccC-CCceEEE
Q 002757 161 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRL-SDHEILL 226 (884)
Q Consensus 161 ~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~-~~q~ill 226 (884)
+...++.++..+||.+|+.++....+++++.-|| +.+.. |.+.+++|.++++. .|..+.|
T Consensus 12 ~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL--~~G~~----L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 12 TVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW--VIGQR----LARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE--EcCCe----eCCCcCCHHHcCCCCCCCEEEE
Confidence 4567789999999999999999999999999999 44333 44456789999998 4455554
No 51
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=93.35 E-value=0.5 Score=40.17 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=52.6
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
++....+.++...|+.+|++++....+++.+..||+ +.+. .|.+ +.+|.++++..+..|.+-++
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g~----~L~d-~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGK----QMND-DKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECCe----EccC-CCCHHHcCCCCCCEEEEEEE
Confidence 455677899999999999999999999999999999 5432 3444 56899999999988877665
No 52
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=93.12 E-value=0.46 Score=40.38 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=53.3
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEe
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQI 230 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~~ 230 (884)
++....+.++..+|+.+|++++.+..+++.++.||| +.+. .|.+ +.+|.++++..+..|.+-++.
T Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~-~~g~----~L~d-~~~L~~~~i~~~~~i~l~~~~ 73 (76)
T cd01803 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK----QLED-GRTLSDYNIQKESTLHLVLRL 73 (76)
T ss_pred CCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE-ECCE----ECCC-CCcHHHcCCCCCCEEEEEEEc
Confidence 455678899999999999999999999999999999 4322 3554 568999999999888887764
No 53
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=92.98 E-value=0.54 Score=40.03 Aligned_cols=66 Identities=8% Similarity=0.078 Sum_probs=53.5
Q ss_pred ccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEe
Q 002757 159 RETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQI 230 (884)
Q Consensus 159 ~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~~ 230 (884)
..+...++.++..+||.+|++++....+++.++.||+ +. ...|.+ +.+|.++++..+..+.+-.+.
T Consensus 6 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~~----G~~L~D-~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01810 6 DKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLS-FE----GRPMED-EHPLGEYGLKPGCTVFMNLRL 71 (74)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-EC----CEECCC-CCCHHHcCCCCCCEEEEEEEc
Confidence 3456678999999999999999999999999999997 32 234555 478999999999988877663
No 54
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=92.94 E-value=0.72 Score=40.67 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=52.3
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
++....+.+++.+|+..|++..|+..+++.+++|++. .+ ..|.+ +.|+.++++.++..|-+-++
T Consensus 20 ~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f-~G----~~L~~-~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 20 DGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF-DG----QRIRD-NQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred CCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE-CC----eECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 4677889999999999999999999999999999994 22 23433 67999999999987766554
No 55
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=92.72 E-value=0.41 Score=40.14 Aligned_cols=62 Identities=15% Similarity=0.061 Sum_probs=49.7
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLE 227 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE 227 (884)
.+....+.++..+|+.+|++.+....+++.+..||+. .+. .|.+ +.+|.++++.++..|.+.
T Consensus 8 ~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-~g~----~l~d-~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 8 GGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF-KGK----ERDD-AETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEee-CCc----ccCc-cCcHHHcCCCCCCEEEEe
Confidence 3555678899999999999999999999999999983 322 3444 578999999998887664
No 56
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=92.66 E-value=0.47 Score=39.85 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=49.9
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 226 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~ill 226 (884)
.+....+.+...+|+.++++.+....+++.++.||+ +.+. .|.+ +.+|.++++..+..+.+
T Consensus 7 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li-~~G~----~L~d-~~~l~~~~i~~~stl~l 67 (70)
T cd01798 7 TGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI-FAGK----ELRN-TTTIQECDLGQQSILHA 67 (70)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE-ECCe----ECCC-CCcHHHcCCCCCCEEEE
Confidence 456678899999999999999999999999999998 3322 3555 57899999998887754
No 57
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=92.40 E-value=0.95 Score=39.65 Aligned_cols=65 Identities=18% Similarity=0.143 Sum_probs=53.1
Q ss_pred eeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcce-eeccCCCccchhhccCCCceEEEE
Q 002757 163 SLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTL-YFLNDKNKFSKDCLRLSDHEILLE 227 (884)
Q Consensus 163 ~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~-~~L~~~~~tl~~~~l~~~q~illE 227 (884)
.....++...|+.+|++++-..+++++...||..+.+.... ..|.+..++|...++.+|..|.+.
T Consensus 14 ~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 14 SFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred eeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 45677999999999999999999999999999766655322 246666788999999999888765
No 58
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=92.04 E-value=0.57 Score=39.50 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=49.2
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 226 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~ill 226 (884)
.+....+.++..+||.+|+.++....+++.++-||| |.+. .|++ +.+|.++++..+..|-+
T Consensus 7 ~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li-~~G~----~L~D-~~~l~~~~i~~~~tv~~ 67 (70)
T cd01794 7 TGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWF-FSGK----LLTD-KTRLQETKIQKDYVVQV 67 (70)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-ECCe----ECCC-CCCHHHcCCCCCCEEEE
Confidence 456778999999999999999999999999999998 4332 3555 57899999987766644
No 59
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=91.70 E-value=0.82 Score=39.67 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=52.6
Q ss_pred eccCCeeEEEEcccccHHHHHHHHHhHcCCCCcc-EEEEEecCCcceeeccCCCccchhhccCCCceEEEE
Q 002757 158 MRETNSLGVKISKKDNAVELFKRACKIFSIESEL-LHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLE 227 (884)
Q Consensus 158 ~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~-~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE 227 (884)
.+++......|...+|+++|+..+......+... ++|..-....... ...++||+++++..+..|++|
T Consensus 13 lpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~--~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 13 LPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELT--DEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp ETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECC--STTTSBTCCCTTSSCEEEEEE
T ss_pred CCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCC--ccccccHHHhcCCCCeEEEEE
Confidence 4778889999999999999999998887766554 8887544433222 222589999999999888887
No 60
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=91.35 E-value=0.56 Score=41.72 Aligned_cols=62 Identities=18% Similarity=0.111 Sum_probs=53.8
Q ss_pred eeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 163 SLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 163 ~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
...+.++..+|+.+|+..+...|++++.+=+||.. +. .|.+..+||.++++.++..|.+=+.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d-G~----~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID-GK----ILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec-Cc----eeccCCccHHhcCCCCCCEEEEEec
Confidence 46788999999999999999999999998899954 33 6778889999999999998887764
No 61
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=91.26 E-value=1.1 Score=37.29 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=51.5
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
++..+.+.++..+|+.+|++.+....+++.++.||-. . ...| +.+.+|.++++..+..|.+-++
T Consensus 4 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~-~----G~~L-~d~~tL~~~~i~~~~~I~l~~k 67 (69)
T PF00240_consen 4 SGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY-N----GKEL-DDDKTLSDYGIKDGSTIHLVIK 67 (69)
T ss_dssp TSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE-T----TEEE-STTSBTGGGTTSTTEEEEEEES
T ss_pred CCcEEEEEECCCCCHHHhhhhcccccccccccceeee-e----eecc-cCcCcHHHcCCCCCCEEEEEEe
Confidence 3446789999999999999999999999999988872 2 2344 4477899999999987776544
No 62
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=91.08 E-value=1 Score=37.69 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=49.9
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 226 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~ill 226 (884)
++....+.++..+|+.+|++++....+++.+..||+. .+ ..|.+ +.+|.++++..+..|.+
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-~g----~~L~d-~~~L~~~~i~~~~~l~l 69 (72)
T cd01809 9 DSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY-SG----RVLKD-DETLSEYKVEDGHTIHL 69 (72)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-CC----EECCC-cCcHHHCCCCCCCEEEE
Confidence 4566789999999999999999999999999999983 32 35555 57899999999877654
No 63
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=90.42 E-value=1.2 Score=38.20 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=52.3
Q ss_pred CeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEe
Q 002757 162 NSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQI 230 (884)
Q Consensus 162 ~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~~ 230 (884)
....+.++..+||.+|+.++-...+++.+..+|+ +.+ ..|++ +++|.++++.++..|.+-++.
T Consensus 8 ~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~-~~G----~~L~d-~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 8 QMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQ-YEG----IFIKD-SNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC----EEcCC-CCcHHHcCCCCCCEEEEEEec
Confidence 4567888999999999999999999999999998 433 24555 578999999999988887774
No 64
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=90.27 E-value=1.4 Score=37.10 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=46.7
Q ss_pred eEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEE
Q 002757 164 LGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLE 227 (884)
Q Consensus 164 ~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE 227 (884)
..+.+...+|+.+|++.+.+..+++.++.||+. .+ ..|.+ +.+|.++++..+..|.+-
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~-~G----k~L~d-~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF-AG----KILKD-TDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE-CC----eEcCC-CCcHHHcCCCCCCEEEEE
Confidence 478899999999999999999999988899873 22 24554 468999999998877654
No 65
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=90.02 E-value=2 Score=36.67 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=51.5
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCC--CCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSI--ESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
.+....+.++..+|+.+|++.+....++ +.++.||+. . ...|++ +.+|.++++..+..|++-+.
T Consensus 9 ~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~-~----G~~L~d-~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 9 KQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY-S----GKILKD-DTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE-C----CEEccC-CCCHHHcCCCCCCEEEEEEe
Confidence 3556788999999999999999999999 888888883 2 235554 56899999999988877655
No 66
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=89.53 E-value=1.6 Score=37.53 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=48.6
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 161 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 161 ~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
+....+.++..+|+.+|++.+.+.++++.+..||- +.+ ..|.+. +|.++++.++..|.+=..
T Consensus 11 G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~-~~G----k~L~d~--~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 11 GTRFDLSVPPDETVEGLKKRISQRLKVPKERLALL-HRE----TRLSSG--KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred CCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE-ECC----cCCCCC--cHHHcCCCCCCEEEEEee
Confidence 45678999999999999999999999988877775 332 245553 799999999887766443
No 67
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=89.11 E-value=2.5 Score=38.54 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=53.5
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEe
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQI 230 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~~ 230 (884)
.+...++.++..+||.+|++++....+++.++.||| +.+ ..|++ +.+|.++++..+..|-+-++.
T Consensus 36 ~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi-~~G----k~L~D-~~tL~dy~I~~~stL~l~~~l 100 (103)
T cd01802 36 TGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLI-WNN----MELED-EYCLNDYNISEGCTLKLVLAM 100 (103)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-ECC----EECCC-CCcHHHcCCCCCCEEEEEEec
Confidence 456678999999999999999999999999999998 332 23555 468999999999888877764
No 68
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=89.09 E-value=2.3 Score=36.23 Aligned_cols=61 Identities=15% Similarity=-0.011 Sum_probs=49.5
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEE
Q 002757 161 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLE 227 (884)
Q Consensus 161 ~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE 227 (884)
+....+.++..+|+.+|++.+-..++++.+..||- +.+ ..|.+ +.||.++++.++..|.+=
T Consensus 11 Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi-~~G----k~L~D-~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK-KWY----TIFKD-HISLGDYEIHDGMNLELY 71 (73)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-eCC----cCCCC-CCCHHHcCCCCCCEEEEE
Confidence 55677789999999999999999999999999986 332 34655 568999999998877653
No 69
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=88.76 E-value=1.8 Score=36.73 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=50.9
Q ss_pred CeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 162 NSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 162 ~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
...++.+...+||.+++.++....+++.++.||| |.+ ..|.+ +.||.++++..+..|-+-++
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li-~~G----k~L~D-~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLL-LAG----VPLED-DATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEE-ECC----eECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 4577889999999999999999999999999998 332 23555 57899999999888766655
No 70
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=88.61 E-value=2.4 Score=36.60 Aligned_cols=66 Identities=14% Similarity=0.057 Sum_probs=51.3
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
.+....+.+...+|+.+|++.+.+.++++.++.||-..+.. ..|++ +.+|.++++..+..|.+-++
T Consensus 11 ~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G---~~L~D-~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 11 GGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSR---EVLQD-GVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCC---CCCCC-CCCHHHcCCCCCCEEEEEEE
Confidence 35567778899999999999999999999998888322222 24555 46899999999988877665
No 71
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=88.26 E-value=2.3 Score=36.67 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=49.1
Q ss_pred EE-EEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEEe
Q 002757 165 GV-KISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQI 230 (884)
Q Consensus 165 ~~-~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~~ 230 (884)
.+ .+...+|+.++++++....+++.++-||| |. ...|++ +.+|.++++..+..|.+-++.
T Consensus 15 ~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi-~~----Gk~L~D-~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 15 TVDSLSRLTKVEELREKIQELFNVEPECQRLF-YR----GKQMED-GHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred EeeccCCcCcHHHHHHHHHHHhCCCHHHeEEE-eC----CEECCC-CCCHHHcCCCCCCEEEEEEec
Confidence 55 36789999999999999999999999998 32 234555 678999999999998887763
No 72
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=87.71 E-value=3.9 Score=35.33 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=50.5
Q ss_pred eccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEE
Q 002757 158 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLE 227 (884)
Q Consensus 158 ~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE 227 (884)
.+++......|+..+|+++|++.+....+.....++|-.-....... -.+.++||.++++..+..+++|
T Consensus 11 lPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~-~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 11 LPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFT-KDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCc-cccccCCHHHCCCCCceEEEEe
Confidence 47788899999999999999999966555555667776433322111 1233679999999988888886
No 73
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=86.23 E-value=4.9 Score=34.37 Aligned_cols=67 Identities=6% Similarity=-0.047 Sum_probs=47.5
Q ss_pred eccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEE
Q 002757 158 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLE 227 (884)
Q Consensus 158 ~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE 227 (884)
.+++......|+..+|+++|++.+.....- ...++|+--.....+.. .+.+.||++++|.. ..++++
T Consensus 9 lpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~-~~~~~TL~e~gL~~-s~~~~~ 75 (77)
T cd01767 9 LPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTD-LDYELTLQEAGLVN-EVVFQR 75 (77)
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCC-CCccCcHHHcCCcc-ceEEEE
Confidence 467888899999999999999999765433 56688885443332211 13688999999995 455554
No 74
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=86.05 E-value=3.5 Score=34.59 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=47.0
Q ss_pred ccCCeeEEEEcccccHHHHHHHHHhHcCCCC-ccEEEEEecCCcceeeccCCCccchhhccCCCceE
Q 002757 159 RETNSLGVKISKKDNAVELFKRACKIFSIES-ELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEI 224 (884)
Q Consensus 159 ~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~-~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~i 224 (884)
.++....+.+.+..+++.|++..|+..+++. ++++++ |.+. .|+ .+.|++++++..+..|
T Consensus 8 ~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~-fdG~----~L~-~~~T~~~~~ied~d~I 68 (72)
T PF11976_consen 8 QDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLI-FDGK----RLD-PNDTPEDLGIEDGDTI 68 (72)
T ss_dssp TTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEE-ETTE----EE--TTSCHHHHT-STTEEE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEE-ECCE----EcC-CCCCHHHCCCCCCCEE
Confidence 3455788999999999999999999999999 899998 3322 233 3679999999987654
No 75
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=85.85 E-value=2.2 Score=36.99 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=37.6
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeec-cCCCccchhhccCCCceEEEE
Q 002757 161 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFL-NDKNKFSKDCLRLSDHEILLE 227 (884)
Q Consensus 161 ~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L-~~~~~tl~~~~l~~~q~illE 227 (884)
+-...+.++..+|+.+|++++.+.|+++.+...|.. +.+....+ ...++||.++++.-|..|.|.
T Consensus 13 dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~--~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 13 DGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSK--DRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp SEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BS--SGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEe--cCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 335677899999999999999999999988776653 23333333 356789999999998877653
No 76
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=85.30 E-value=6 Score=34.29 Aligned_cols=71 Identities=10% Similarity=-0.025 Sum_probs=51.4
Q ss_pred EeccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 157 VMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 157 ~~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
.++++......|...+++++|+..+... +.+...++|---.....+. -.+.+.||++++|.....|+||.+
T Consensus 10 RlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~-~~d~~~TL~e~gL~p~~~L~Veer 80 (80)
T cd01771 10 RTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLT-QLDPNFTLLELKLYPQETLILEER 80 (80)
T ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCc-CCCCCCcHHHcCCCCCcEEEEEcC
Confidence 3577888899999999999999998653 4455566665333232222 134567999999999889999853
No 77
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=84.42 E-value=5.1 Score=35.17 Aligned_cols=69 Identities=6% Similarity=-0.028 Sum_probs=48.0
Q ss_pred eccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeec----cCCCccchhhccCCCceEEEE
Q 002757 158 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFL----NDKNKFSKDCLRLSDHEILLE 227 (884)
Q Consensus 158 ~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L----~~~~~tl~~~~l~~~q~illE 227 (884)
.+++......|...+|+++|+..+-. ....+++++|---........+ .+.+.||+++||.....++++
T Consensus 11 lp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 11 LPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 46788889999999999999999943 2333456666532222222221 345779999999988888776
No 78
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=84.38 E-value=4.3 Score=34.62 Aligned_cols=64 Identities=9% Similarity=0.043 Sum_probs=48.8
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 226 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~ill 226 (884)
.+....+.+...+|+.+|++++....+++.++-+|--.. -....+.+ +.+|.++++..++.|++
T Consensus 8 ~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~--~~Gk~l~D-~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 8 GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLK--VKGKPAED-DVKISALKLKPNTKIMM 71 (74)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeec--ccCCcCCC-CcCHHHcCCCCCCEEEE
Confidence 455577889999999999999999999999887777410 01224554 57899999998887764
No 79
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=84.04 E-value=8.2 Score=33.63 Aligned_cols=71 Identities=6% Similarity=0.048 Sum_probs=52.2
Q ss_pred EeccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 157 VMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 157 ~~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
..+++......|...+++.+|+..+-. .+.+.+++.|---.....+.. .+.+.||+++||.....++||-+
T Consensus 11 RlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~-~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 11 RYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSH-LDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCC-cccCCCHHHcCCCCCcEEEEecC
Confidence 357788889999999999999998866 355667777763332332222 34567999999999999998854
No 80
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=83.90 E-value=3.8 Score=33.09 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=43.1
Q ss_pred CeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCC
Q 002757 162 NSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSD 221 (884)
Q Consensus 162 ~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~ 221 (884)
....+.++...|+.+|+..+...++++.+..||+. .+ ..|.+ +.+|.++++.++
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~-~g----~~L~d-~~tL~~~~i~~~ 63 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY-KG----KVLED-DRTLADYNIQDG 63 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-CC----EECCC-CCCHHHcCCcCC
Confidence 46778899999999999999999999988888873 22 23554 578999888764
No 81
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=82.96 E-value=4.4 Score=33.20 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=46.7
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002757 161 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 226 (884)
Q Consensus 161 ~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~ill 226 (884)
+....+.+....|+.+|++++.+.++++.+..+|+. .+ ..+++ +.+|.++++.++..|.+
T Consensus 7 ~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~-~g----~~l~d-~~~l~~~~v~~~~~i~v 66 (69)
T cd01769 7 GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY-AG----KILKD-DKTLSDYGIQDGSTLHL 66 (69)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE-CC----cCCCC-cCCHHHCCCCCCCEEEE
Confidence 455678888999999999999999999998888853 22 23444 56799999988876654
No 82
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=81.95 E-value=0.69 Score=45.79 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=16.5
Q ss_pred cCccccccCCCcccHHHHHHHHhC
Q 002757 281 LGLTGLQNLGNTCFMNSALQCLVH 304 (884)
Q Consensus 281 ~g~~GL~NlGNTCYmNSvLQ~L~~ 304 (884)
.-+.|+.|.+|||++||++|.+..
T Consensus 31 ~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 31 MEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp -EEE----SSSTHHHHHHHHHHHH
T ss_pred eEEecCCCCCCChHHHHHHHHHHH
Confidence 456799999999999999998753
No 83
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=79.89 E-value=14 Score=31.30 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=43.8
Q ss_pred eccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEE
Q 002757 158 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLEL 228 (884)
Q Consensus 158 ~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~ 228 (884)
+++++...+.+....|++|.+..+|+..++..+.+.++... .....-++.. +....++.+.+|.
T Consensus 7 LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~-~~k~l~~~~d------~~~L~~~El~ve~ 70 (71)
T PF02196_consen 7 LPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG-EKKPLDWDQD------SSSLPGEELRVEK 70 (71)
T ss_dssp ETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE-EEEEE-TTSB------GGGGTTSEEEEEE
T ss_pred CCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC-CCccccCCCc------eeeecCCEEEEEe
Confidence 47888889999999999999999999999999988888554 2222222222 2333457888885
No 84
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=75.63 E-value=15 Score=31.12 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=49.7
Q ss_pred eccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 158 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 158 ~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
++|++...+.+....||+|++.++|+..++..+.+.++... ..+...++. +.....+++|.+|.+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g-~~k~l~~~q------D~~~L~~~El~vE~r 70 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG-GDKPLVLDQ------DSSVLAGQEVRLEKR 70 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec-CCcccccCC------ccceeeccEEEEEEe
Confidence 57888899999999999999999999999999988888773 333333333 334445688888865
No 85
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=74.95 E-value=3.5 Score=40.94 Aligned_cols=35 Identities=31% Similarity=0.547 Sum_probs=26.2
Q ss_pred Eeee--cCCCCeEEEEEEcCCCCEEEEcCCcceecCcc
Q 002757 830 NHYG--SMGGGHYTAFVHHGGGQWYDFDDSHVYPISQD 865 (884)
Q Consensus 830 nH~G--~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~v~~~ 865 (884)
.|.| --|.||-++|++.. +.||.|||..+.+-+++
T Consensus 129 f~agi~~~g~~Havfa~~ts-~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 129 FHAGIFLKGQEHAVFACVTS-DGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp EEEEEEEESTTEEEEEEEET-TCEEEEETTEEEE----
T ss_pred hhhHheecCCcceEEEEEee-CcEEEecCCeeeeCCCC
Confidence 4666 35789999999874 68999999999998864
No 86
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=74.16 E-value=2.7 Score=34.15 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=28.9
Q ss_pred CCcccCCCCCCcceeEEEEEee--ecCCeEEEEEeceee
Q 002757 751 EDMWYCPGCKKHCQASKKLDLW--RLPEILVIHLKRFSY 787 (884)
Q Consensus 751 ~d~w~C~~Ck~~~~A~Kk~~i~--~lP~iLiIhLKRF~~ 787 (884)
.++|.||+|+.+.-..|.+..- .+-+|+=|++|+|-.
T Consensus 2 ~~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 2 KNAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred CccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 3578899999887777766653 678888999999863
No 87
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=73.67 E-value=16 Score=31.56 Aligned_cols=68 Identities=4% Similarity=-0.042 Sum_probs=47.0
Q ss_pred eccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEE
Q 002757 158 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLE 227 (884)
Q Consensus 158 ~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE 227 (884)
.+++......|+..+|+.+|...+.....- ...+.|---.....+. .++.++||++++|.+...++++
T Consensus 11 lp~G~~~~~~F~~~~tl~~v~~fV~~~~~~-~~~f~L~t~fPrk~~~-~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 11 LLDGTTLKQTFKAREQLAAVRLFVELNTGN-GGPFTLMTPFPRKVFT-EDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred CCCCCEEEEEeCCCChHHHHHHHHHHcCCC-CCCEEEEeCCCCeECC-cccccCCHHHCCCCCceEEEEe
Confidence 467888899999999999999999865432 2445554322222111 1245789999999988887775
No 88
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=73.51 E-value=14 Score=31.27 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=48.0
Q ss_pred eccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCc-ceeeccCCCccchhhccCCCceEEEEE
Q 002757 158 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQT-TLYFLNDKNKFSKDCLRLSDHEILLEL 228 (884)
Q Consensus 158 ~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~-~~~~L~~~~~tl~~~~l~~~q~illE~ 228 (884)
++|+....+.+....|+.|+++.+|+..+++++.+.+....... ....+ -+++....+++|.+|.
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~~~~~~------~~d~~~L~~~El~Ve~ 71 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKKPLDL------DTDSSSLAGEELEVEP 71 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCcCc------hhhhhhhcCCEEEEEe
Confidence 47888899999999999999999999999999988888764332 11111 2344555567777764
No 89
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=71.92 E-value=21 Score=30.87 Aligned_cols=44 Identities=5% Similarity=0.162 Sum_probs=35.7
Q ss_pred eEEEEEEeccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEe
Q 002757 151 LQLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDF 197 (884)
Q Consensus 151 ~~l~l~~~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~ 197 (884)
..++++... .+.+.+...-+..+|.+++++.|+++.+.+.|+-.
T Consensus 3 ~vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYk 46 (80)
T cd06406 3 YVVKVHFKY---TVAIQVARGLSYATLLQKISSKLELPAEHITLSYK 46 (80)
T ss_pred eEEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEec
Confidence 445555432 57888999999999999999999999888989843
No 90
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=69.77 E-value=8.1 Score=32.09 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=32.0
Q ss_pred ccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCce
Q 002757 159 RETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHE 223 (884)
Q Consensus 159 ~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~ 223 (884)
++....++.++...++.++++.+|+.|+++.++..|-. +. ..+ +.+....=+++..|..
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h--~~---k~l-dlslp~R~snL~n~ak 62 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKH--NN---KPL-DLSLPFRLSNLPNNAK 62 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEE--TT---EEE-SSS-BHHHH---SS-E
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEE--CC---EEe-ccccceeecCCCCCCE
Confidence 45567889999999999999999999999988655542 11 112 2233455556665544
No 91
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.45 E-value=17 Score=41.31 Aligned_cols=64 Identities=11% Similarity=0.175 Sum_probs=52.1
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcC---CCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFS---IESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~---i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
++..+.+.++..+||.+|++++....+ ++.++.||+ |.+ ..|++ +.+|.++++..+..|++=+.
T Consensus 9 ~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLI-y~G----kiL~D-d~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 9 QQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLI-YSG----KILSD-DKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEE-ECC----EECCC-CCcHHHcCCCCCCEEEEEec
Confidence 455678899999999999999999988 888889998 432 35655 46899999998888877766
No 92
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=66.23 E-value=38 Score=29.23 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=44.4
Q ss_pred eccCCeeEEEEcccccHHHHHHHHHhHcCCC-CccEEEEEecCCcceeeccCCCccchhhccCCC
Q 002757 158 MRETNSLGVKISKKDNAVELFKRACKIFSIE-SELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSD 221 (884)
Q Consensus 158 ~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~-~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~ 221 (884)
++|+...+..|...+||++|++.+.....-. ...+.|.--... ..+.+.+.||++++|...
T Consensus 11 lpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~---k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 11 LADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPV---KELSDESLTLKEANLLNA 72 (79)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCC---cccCCCCCcHHHCCCcCc
Confidence 5678889999999999999999998765432 356777633222 224444889999999864
No 93
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=65.05 E-value=44 Score=29.23 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=39.8
Q ss_pred cceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEE-EecceeEEcccCCcccccc--cCCCCcEE
Q 002757 484 SPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE-IYNHQIIRYLEEPADSISL--IRDDDQLV 546 (884)
Q Consensus 484 ~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e-~~~~~~~~~~~~~~~~~~~--i~~~d~i~ 546 (884)
...+.++++..++.+|+..|...+|+++..+-+... -........+.+....|.. +.++..|.
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~ 79 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIH 79 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEE
Confidence 456778999999999999999999999866544432 2233444444545555543 44444444
No 94
>smart00455 RBD Raf-like Ras-binding domain.
Probab=61.84 E-value=33 Score=28.91 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=46.6
Q ss_pred eccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEE
Q 002757 158 MRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLEL 228 (884)
Q Consensus 158 ~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~ 228 (884)
++++....+.+-...|+.|++..+|+..+++++.+.+.... ..+..-++. ++....++.+.+|.
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g-~~k~ldl~~------~~~~l~~~el~ve~ 69 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG-EKKPLDLNQ------PISSLDGQELVVEE 69 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC-CCcceecCC------ccccccCceEEEEe
Confidence 47788889999999999999999999999999888887542 222222222 23344567788775
No 95
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=61.26 E-value=4.3 Score=51.05 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=87.1
Q ss_pred CCCHHHHHHHhcCccccCCCCcccCCCCCCcceeEEEEEeeecCCeEEEEEeceeeecccccccceeEecccCCCCcccc
Q 002757 732 SVSLYKCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTH 811 (884)
Q Consensus 732 ~isL~dcL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~ 811 (884)
...+.+|+..|+....+..+...-|+.|.....-. ...-. .+++|+..|+.......-+....+.+++.++.+-.+
T Consensus 481 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~ 556 (842)
T KOG1870|consen 481 VEILFDCFNKIFAADELKLDSIYSDEELFDYELGV--LKVQG--SIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVS 556 (842)
T ss_pred ceeccchhhhhhccCccccccccCCcceEEeeccc--ccccc--cceEEEEEeeccccccccCcccCCCccccCCcceee
Confidence 44678999999988876666667777776543221 11111 168888888876554455677889999989888766
Q ss_pred ccccCCCCCceEEEEEEEEeeecCCCCeEEEEEEcCCCCEEEEcCCcceecC
Q 002757 812 VAHLNDKLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPIS 863 (884)
Q Consensus 812 v~~~~~~~~~~YdL~aVinH~G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~v~ 863 (884)
+... .....++|..+++|.++...||+ ..+.|+..++..+..+.
T Consensus 557 ~~~~--~~~t~~~l~~~~~~~~s~~~~~~------~~~v~~~~~~~~~~~~~ 600 (842)
T KOG1870|consen 557 VLSG--AQSTEEDLLSVICHRTSRYSREP------PLNVGYGVDDQSLKEVS 600 (842)
T ss_pred ccCC--CcccccchhhHHhhcccccCCcC------ccccccCCCcccccccc
Confidence 6542 25678999999999998888888 55789999998888765
No 96
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=60.96 E-value=22 Score=40.85 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=55.7
Q ss_pred EEEEEeccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 153 LRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 153 l~l~~~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
++|.+..-+....+.+...+||.++++.+...|+.+.++.+|-. . ..+|++ +.||...++.+|-+|-|-++
T Consensus 16 irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIf-a----GrILKD-~dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 16 IRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIY-A----GRILKD-DDTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred eEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeee-c----CccccC-hhhHHHcCCCCCcEEEEEec
Confidence 44444333447889999999999999999999999999888762 2 235664 66899999999988877666
No 97
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=60.76 E-value=31 Score=29.67 Aligned_cols=72 Identities=11% Similarity=0.157 Sum_probs=45.2
Q ss_pred EEEEEeccC-CeeEEEEcccccHHHHHHHHHhHcCCCCcc---EEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002757 153 LRLSVMRET-NSLGVKISKKDNAVELFKRACKIFSIESEL---LHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 226 (884)
Q Consensus 153 l~l~~~~~~-~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~---~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~ill 226 (884)
.++.....+ ....+.+...-++++++..+...++++..+ .+-|... ......|.. +.||.++++.+|..+.|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~-~~~g~~L~~-~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLA-RAGGRPLDP-DQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG--GGTEEEET-TSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEE-ecCCcccCC-cCcHhHcCCCCCCEEEe
Confidence 344444444 788999999999999999999999986543 3468777 344445544 77899999999987765
No 98
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=59.32 E-value=58 Score=28.24 Aligned_cols=53 Identities=21% Similarity=0.188 Sum_probs=43.7
Q ss_pred cceEEEeCCCCCHHHHHHHHHHHhcCC-CCceEEEEEEecc-eeEEcccCCcccc
Q 002757 484 SPFTITVPKYGKFEDLIRALSIACALG-VNETLLVAEIYNH-QIIRYLEEPADSI 536 (884)
Q Consensus 484 ~~~~v~~~k~~~~~~l~~~l~~~~~~~-~~~~l~~~e~~~~-~~~~~~~~~~~~~ 536 (884)
.-.++.+++..+..+++..+.+.+++. ++....++|+... ...+.+.+...++
T Consensus 13 ~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl 67 (87)
T cd01768 13 TYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPL 67 (87)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChH
Confidence 346788999999999999999999998 7788999999877 5677777666554
No 99
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=57.31 E-value=45 Score=34.68 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=38.1
Q ss_pred CeeEEEEcccccHHHHHHHHHhHcCCCCc---cEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 162 NSLGVKISKKDNAVELFKRACKIFSIESE---LLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 162 ~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~---~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
....+.+.+..||.||++.+.+.++++.+ .+|+|...+......+.. +.++... .....+-+|.-
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~-d~~i~~l--~~~~~~r~E~i 101 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSE-DEPISSL--NDYITLRIEEI 101 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-T-TSBGGGS----TTEEEEEE-
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCC-CCchhhc--cCcceeeeecC
Confidence 35788999999999999999999998754 799999987766666653 4445554 22224556643
No 100
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=56.32 E-value=62 Score=28.13 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=34.7
Q ss_pred EEEEEEeccC---CeeEEEEcccccHHHHHHHHHhHcCCC--CccEEEE
Q 002757 152 QLRLSVMRET---NSLGVKISKKDNAVELFKRACKIFSIE--SELLHIW 195 (884)
Q Consensus 152 ~l~l~~~~~~---~~~~~~~Sk~~ti~~l~~~v~~~f~i~--~~~~RlW 195 (884)
.++++..... ...++.++...|.+++.+.+.+.|++. +.++.||
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 4566653222 268899999999999999999999993 4579998
No 101
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=55.87 E-value=59 Score=30.06 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=50.0
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhcc-------CCCceEEEEEE-ecC
Q 002757 161 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLR-------LSDHEILLELQ-IYG 232 (884)
Q Consensus 161 ~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l-------~~~q~illE~~-~~~ 232 (884)
...+....-...|+-+|++.+-.+.+.++++-||| .. . .+|++ ++||.++|+ +..-.+-|-++ .+|
T Consensus 11 KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~-kd-~---qvLeD-~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~ 84 (119)
T cd01788 11 KTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY-KD-D---QLLDD-GKTLGDCGFTSQTARPQAPATVGLAFRSSDD 84 (119)
T ss_pred ceEEEeecCCcccHHHHHHHHHHHhcCChhHheee-cC-c---eeecc-cccHHHcCccccccccCCCCeEEEEEecCCC
Confidence 33455667889999999999999999999999999 22 2 35655 789999999 44455556666 334
Q ss_pred cc
Q 002757 233 LS 234 (884)
Q Consensus 233 ~w 234 (884)
.+
T Consensus 85 ~f 86 (119)
T cd01788 85 TF 86 (119)
T ss_pred Cc
Confidence 44
No 102
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=54.74 E-value=22 Score=39.25 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=40.2
Q ss_pred CcCccccccCCCcccHHHHHHHHhCChH-HHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCCCCcChHHHHH
Q 002757 280 CLGLTGLQNLGNTCFMNSALQCLVHTPK-LVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKS 358 (884)
Q Consensus 280 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~-f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 358 (884)
..|++=|.=.-|+||+||++=.|=++.. |+... +. ++..++..+ .|..|..
T Consensus 99 ~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~~-------------------l~----~aw~~f~~G-----~~~~fVa 150 (320)
T PF08715_consen 99 VNGFRVLKQSDNNCWVNAACLQLQALKIKFKSPG-------------------LD----EAWNEFKAG-----DPAPFVA 150 (320)
T ss_dssp ETTEEEE---TTTHHHHHHHHHHTTST--BSSHH-------------------HH----HHHHHHHTT-------HHHHH
T ss_pred ECCEEEEEecCCCcHHHHHHHHHHhcCCccCCHH-------------------HH----HHHHHHhCC-----ChHHHHH
Confidence 3467777777899999999877765532 22111 11 122222111 4555555
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHHHHH
Q 002757 359 KLARFAPQFSGFNQHDSQELLAFLLDGLH 387 (884)
Q Consensus 359 ~l~~~~~~F~~~~QqDA~EfL~~LLd~L~ 387 (884)
.+-.. ..+..++--||+++|..||..++
T Consensus 151 ~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 151 WCYAS-TNAKKGDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp HHHHH-TT--TTS---HHHHHHHHHTTB-
T ss_pred HHHHH-cCCCCCCCcCHHHHHHHHHHhcc
Confidence 55432 34556788999999999996655
No 103
>PLN02560 enoyl-CoA reductase
Probab=53.08 E-value=45 Score=36.80 Aligned_cols=65 Identities=18% Similarity=0.083 Sum_probs=46.5
Q ss_pred EEEEcccccHHHHHHHHHhHcCC-CCccEEEEEec--CCcceeeccCCCccchhhccCCCceEEEEEEecC
Q 002757 165 GVKISKKDNAVELFKRACKIFSI-ESELLHIWDFS--GQTTLYFLNDKNKFSKDCLRLSDHEILLELQIYG 232 (884)
Q Consensus 165 ~~~~Sk~~ti~~l~~~v~~~f~i-~~~~~RlW~~~--~~~~~~~L~~~~~tl~~~~l~~~q~illE~~~~~ 232 (884)
++.++..+|+.||++.+-+..++ +.+..||+... ++.....+++ +++|.+.++.++.+ |-++.=|
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d-~ktL~d~gv~~gst--Ly~kDLG 84 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDD-SKSLKDYGLGDGGT--VVFKDLG 84 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCC-CCCHHhcCCCCCce--EEEEeCC
Confidence 67889999999999999988876 67888999532 2222334444 56899999988765 3445434
No 104
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=50.60 E-value=1.4e+02 Score=25.26 Aligned_cols=60 Identities=12% Similarity=0.219 Sum_probs=40.4
Q ss_pred ccCCeeEEEEcccccHHHHHHHHHhHcCCCCc-cEEEEE-ecCCcceeeccCCCccchhhccC
Q 002757 159 RETNSLGVKISKKDNAVELFKRACKIFSIESE-LLHIWD-FSGQTTLYFLNDKNKFSKDCLRL 219 (884)
Q Consensus 159 ~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~-~~RlW~-~~~~~~~~~L~~~~~tl~~~~l~ 219 (884)
.|+...++.+.+..|.++|.+.+|..++|... -+=|.- ....+....|+. +++|.+....
T Consensus 4 lD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~-~k~l~~q~~~ 65 (80)
T PF09379_consen 4 LDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDL-DKKLKKQLKK 65 (80)
T ss_dssp SSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-S-SSBGGGSTBT
T ss_pred cCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccC-cccHHHHcCC
Confidence 45667899999999999999999999999854 355554 233333444443 4456665444
No 105
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=48.39 E-value=37 Score=29.05 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=39.0
Q ss_pred ccccHHHHHHHHHhHcC--CC-CccEEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002757 170 KKDNAVELFKRACKIFS--IE-SELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 226 (884)
Q Consensus 170 k~~ti~~l~~~v~~~f~--i~-~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~ill 226 (884)
..+||.+|++++...++ ++ .++.||- |.++ .|++ +.||.++++..+..|.+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLI-y~GK----iL~D-~~TL~dygI~~gstlhL 72 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLI-HCGR----KLKD-DQTLDFYGIQSGSTIHI 72 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEE-eCCc----CCCC-CCcHHHcCCCCCCEEEE
Confidence 37899999999999974 64 7778887 4433 2555 57899999999877765
No 106
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=44.41 E-value=17 Score=22.08 Aligned_cols=14 Identities=43% Similarity=1.146 Sum_probs=10.3
Q ss_pred EEEcCCCCEEEEcCC
Q 002757 843 FVHHGGGQWYDFDDS 857 (884)
Q Consensus 843 y~k~~~~~Wy~fnDs 857 (884)
+++. ++.||+|+++
T Consensus 3 W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEE-TTEEEEETTT
T ss_pred CEEE-CCEEEEeCCC
Confidence 4554 4899999875
No 107
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=43.41 E-value=1e+02 Score=27.16 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=50.4
Q ss_pred EEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecc-eeEEcccCCccc
Q 002757 470 MTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNH-QIIRYLEEPADS 535 (884)
Q Consensus 470 ~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~~~~~~ 535 (884)
..|.|+..||.+ ..+.+....+..++++.|........+....++|..-. .+.|.|+|.+..
T Consensus 3 ~vvkv~~~Dg~s----K~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~v 65 (85)
T cd01787 3 QVVKVYSEDGAS----KSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELV 65 (85)
T ss_pred eEEEEEecCCCe----eEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHH
Confidence 346677788875 57788999999999999999999999889999987654 688888876543
No 108
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=43.18 E-value=1.8e+02 Score=25.35 Aligned_cols=52 Identities=19% Similarity=0.182 Sum_probs=41.8
Q ss_pred ceEEEeCCCCCHHHHHHHHHHHhcCCC-CceEEEEEEecceeEEcccCCcccc
Q 002757 485 PFTITVPKYGKFEDLIRALSIACALGV-NETLLVAEIYNHQIIRYLEEPADSI 536 (884)
Q Consensus 485 ~~~v~~~k~~~~~~l~~~l~~~~~~~~-~~~l~~~e~~~~~~~~~~~~~~~~~ 536 (884)
-.++.+++..+..+++..+.+.+++.. .+...++|+......+.+.+...++
T Consensus 17 ~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl 69 (90)
T smart00314 17 YKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPL 69 (90)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcce
Confidence 467889999999999999999999987 5788899998666677777555554
No 109
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=42.49 E-value=12 Score=41.51 Aligned_cols=114 Identities=19% Similarity=0.227 Sum_probs=64.7
Q ss_pred CCCcCccccccCCCcccHHHHHHHHhCChHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHcCCCC-------CC
Q 002757 278 AGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGA-------AP 350 (884)
Q Consensus 278 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~-------~~ 350 (884)
....-++|+.|.||-|+.+|..|.+.+..++...+-...+..+......+ ...+..-|+..++......+ .+
T Consensus 173 n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~-~spiS~ifgg~~rs~l~~~~nkeS~tlqP 251 (420)
T KOG1871|consen 173 NDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFV-RSPISEIFGGQLRSVLYQPSNKESATLQP 251 (420)
T ss_pred cccccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcc-cCcHHHhhccccccceeccccccccccCc
Confidence 34456899999999999999999999999998866433222222222111 13344444444333221110 01
Q ss_pred cCh----------HHHHHHHhhhC-----CCCC--------CCCCCCHHHHHHHHHHHHHHHhhh
Q 002757 351 VSP----------RTFKSKLARFA-----PQFS--------GFNQHDSQELLAFLLDGLHEDLNR 392 (884)
Q Consensus 351 i~p----------~~~~~~l~~~~-----~~F~--------~~~QqDA~EfL~~LLd~L~eel~~ 392 (884)
+-| .....++..+. |.+. ...|-++++|..+|+..|+..+-+
T Consensus 252 F~tlqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye 316 (420)
T KOG1871|consen 252 FFTLQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYE 316 (420)
T ss_pred cceeeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHH
Confidence 111 11122222221 2222 257889999999999999976543
No 110
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=41.88 E-value=71 Score=24.18 Aligned_cols=37 Identities=8% Similarity=0.189 Sum_probs=31.4
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEE
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWD 196 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~ 196 (884)
+.....+.++...|+.++++.++..++++.+.++|+.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~ 42 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLV 42 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEE
Confidence 4456678888999999999999999998888888873
No 111
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=41.62 E-value=1.1e+02 Score=26.41 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=37.5
Q ss_pred eEEEEcccccHHHHHHHHHhHcC-CC-CccEEEEEecCCcceeeccCCCccchhhc--cCCCceEE
Q 002757 164 LGVKISKKDNAVELFKRACKIFS-IE-SELLHIWDFSGQTTLYFLNDKNKFSKDCL--RLSDHEIL 225 (884)
Q Consensus 164 ~~~~~Sk~~ti~~l~~~v~~~f~-i~-~~~~RlW~~~~~~~~~~L~~~~~tl~~~~--l~~~q~il 225 (884)
+.+.+...+|+.+|++++.+.+. .+ .++-||- |.+ ..|++ +.||.++. +..+..|-
T Consensus 16 ~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLI-y~G----KiLkD-~~tL~~~~~~~~~~~tiH 75 (79)
T cd01790 16 QTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLI-YSG----KLLPD-HLKLRDVLRKQDEYHMVH 75 (79)
T ss_pred EEEecCCcChHHHHHHHHHHhcCCCCChhHeEEE-EcC----eeccc-hhhHHHHhhcccCCceEE
Confidence 44444789999999999999884 33 5667776 332 35655 56888875 55555443
No 112
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=41.41 E-value=1.1e+02 Score=26.56 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=34.0
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCC--CccEEEEEecCC
Q 002757 161 TNSLGVKISKKDNAVELFKRACKIFSIE--SELLHIWDFSGQ 200 (884)
Q Consensus 161 ~~~~~~~~Sk~~ti~~l~~~v~~~f~i~--~~~~RlW~~~~~ 200 (884)
+...++.+++.+|..++...+.+.|+++ +.++.|+.....
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~ 53 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGD 53 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECC
Confidence 5568999999999999999999999998 357888876544
No 113
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=41.31 E-value=42 Score=29.75 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=42.7
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCC
Q 002757 161 TNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLS 220 (884)
Q Consensus 161 ~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~ 220 (884)
...+.......+|+-||+.++-.+..-|.++-|||..... .+|++ .+||.++|+.+
T Consensus 11 kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~e---qlL~D-~ktL~d~gfts 66 (110)
T KOG4495|consen 11 KTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTE---QLLDD-GKTLGDCGFTS 66 (110)
T ss_pred ceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHH---HHhhc-cchhhhccccc
Confidence 3445666788899999999998888889999999976533 34544 67888887765
No 114
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=40.64 E-value=1.6e+02 Score=26.65 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=48.7
Q ss_pred EEEEEEeccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceE
Q 002757 152 QLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEI 224 (884)
Q Consensus 152 ~l~l~~~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~i 224 (884)
.|++.- .+++...+.+.+...++-|++.=|+.-+++.+.+|+. +.+.. . ....|-.++....+..|
T Consensus 22 ~LKV~g-qd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFl-FdG~r-I----~~~~TP~~L~mEd~D~I 87 (99)
T KOG1769|consen 22 NLKVKG-QDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFL-FDGQR-I----RETHTPADLEMEDGDEI 87 (99)
T ss_pred EEEEec-CCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEE-ECCcC-c----CCCCChhhhCCcCCcEE
Confidence 555544 5677789999999999999999999999999999987 33332 1 12446677777776554
No 115
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=39.79 E-value=56 Score=28.76 Aligned_cols=40 Identities=13% Similarity=0.334 Sum_probs=33.9
Q ss_pred eEEEEEEeccCCeeEEEEcccccHHHHHHHHHhHcCCCCcc
Q 002757 151 LQLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESEL 191 (884)
Q Consensus 151 ~~l~l~~~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~ 191 (884)
..|++.+ +|+...++.+-+.++..++++.++..++++.+-
T Consensus 2 V~L~V~L-pdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 2 VELRIAL-PDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred eEEEEEc-cCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 4566554 678889999999999999999999999999764
No 116
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=39.25 E-value=57 Score=28.04 Aligned_cols=31 Identities=16% Similarity=0.398 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHhHcCCCCccEEEEEecCCc
Q 002757 171 KDNAVELFKRACKIFSIESELLHIWDFSGQT 201 (884)
Q Consensus 171 ~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~ 201 (884)
..++.||+.++|..|.++...++|....+.+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT 50 (77)
T cd06535 20 AKNLKELLRKGCRLLQLPCAGSRLCLYEDGT 50 (77)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCc
Confidence 5689999999999999998788998777665
No 117
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=36.87 E-value=36 Score=39.40 Aligned_cols=75 Identities=23% Similarity=0.304 Sum_probs=62.5
Q ss_pred CCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecc-eeEEcccCCcccccccC
Q 002757 462 LPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNH-QIIRYLEEPADSISLIR 540 (884)
Q Consensus 462 lp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~~~~~~~~~i~ 540 (884)
++....+...|.|+..||.. ..+.|....+..|+++.|.....+..++..-++|.+-| .|.|+|+|.+..++.+.
T Consensus 181 lk~a~vrklvVKvfseDgas----ksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls 256 (622)
T KOG3751|consen 181 LKEAKVRKLVVKVFSEDGAS----KSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLS 256 (622)
T ss_pred cccccccceeEEEEccCCce----eeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHh
Confidence 45566678888999999986 57788899999999999998888888889999999988 78999999877665543
No 118
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=36.71 E-value=1.9e+02 Score=24.44 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=36.7
Q ss_pred ceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecceeEEcccCCccccc--ccCCCCcEEEE
Q 002757 485 PFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSIS--LIRDDDQLVAY 548 (884)
Q Consensus 485 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~--~i~~~d~i~~y 548 (884)
++.++++.+.++.+|++.++...++.....-+. +.. +++.|. ..|+ .|.++..|..|
T Consensus 13 ~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi---~~G---k~L~D~-~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 13 KVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK---KWY---TIFKDH-ISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE---eCC---cCCCCC-CCHHHcCCCCCCEEEEE
Confidence 355678889999999999999888776544332 333 344442 2232 36666666655
No 119
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=36.67 E-value=1.2e+02 Score=25.73 Aligned_cols=42 Identities=10% Similarity=0.232 Sum_probs=33.5
Q ss_pred EEEEEEeccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEE
Q 002757 152 QLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIESELLHIW 195 (884)
Q Consensus 152 ~l~l~~~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW 195 (884)
.+++.. .+....+.+++..|+.+|..++++.|++....++|.
T Consensus 3 ~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~ 44 (81)
T smart00666 3 DVKLRY--GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLK 44 (81)
T ss_pred cEEEEE--CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 444444 445677888999999999999999999987778775
No 120
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=35.65 E-value=3.2e+02 Score=25.12 Aligned_cols=73 Identities=22% Similarity=0.209 Sum_probs=47.6
Q ss_pred EeeCCCCcceeEEE-EEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCC----CCceEEEEEEecceeEEcccC
Q 002757 459 SLPLPSTTVRMMTL-TVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALG----VNETLLVAEIYNHQIIRYLEE 531 (884)
Q Consensus 459 sLplp~~~~~~~~v-~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~----~~~~l~~~e~~~~~~~~~~~~ 531 (884)
.|..|.+..-.+-| .++..|+..+-....|.|+...+..++++.|-+.+.+. .+....+.++..+.-.+-+.+
T Consensus 10 ~~s~p~e~lef~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d 87 (112)
T cd01782 10 HLSYPTEDLEFHGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLD 87 (112)
T ss_pred eecCCCcccEEeeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCC
Confidence 35566665444443 46667777777778899999999999999998887733 233555555554443344443
No 121
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=35.31 E-value=91 Score=26.51 Aligned_cols=54 Identities=13% Similarity=-0.054 Sum_probs=38.1
Q ss_pred cccccHHHHHHHHHhHcC-CCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEE
Q 002757 169 SKKDNAVELFKRACKIFS-IESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILL 226 (884)
Q Consensus 169 Sk~~ti~~l~~~v~~~f~-i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~ill 226 (884)
+...|+.+|++.+-+..+ ++.+..||+... ....|.+ +.+|.+.++.++..|.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~---~g~~L~d-~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEP---KGKSLKD-DDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCC---CCcccCC-cccHhhcCCCCCCEEEE
Confidence 567899999999988875 467778888443 2234443 45799999988776543
No 122
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=34.95 E-value=56 Score=34.88 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=44.5
Q ss_pred EEEEcccccHHHHHHHHHhHcCCCCc-cEEEEEecCCcceeeccCCCccchhhccCCCceEEEEEE
Q 002757 165 GVKISKKDNAVELFKRACKIFSIESE-LLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLELQ 229 (884)
Q Consensus 165 ~~~~Sk~~ti~~l~~~v~~~f~i~~~-~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~~ 229 (884)
.+.+++.+++.++...+++..+++.+ ++.+|-=-..+..+.+ +.+.|+..+.+.+|..|+++..
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i-~~~~t~~~~el~~GdIi~fQ~~ 152 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPI-DPNQTFEKAELQDGDIICFQRA 152 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--TTEEEEEEE-
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEc-CCCCchhhcccCCCCEEEEEec
Confidence 46789999999999999999999864 6888864434444455 5678899999999988888866
No 123
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=34.49 E-value=2.8e+02 Score=25.68 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=47.5
Q ss_pred eEEEEEEeccCCeeEEEEcccccHHHHHHHHHhHc----CC-C--CccEEEEEecCCcceeeccCCCccchhhccCCCce
Q 002757 151 LQLRLSVMRETNSLGVKISKKDNAVELFKRACKIF----SI-E--SELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHE 223 (884)
Q Consensus 151 ~~l~l~~~~~~~~~~~~~Sk~~ti~~l~~~v~~~f----~i-~--~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~ 223 (884)
+.|++.+........+.|+...|+.+|++++...- .. + ..++||-.. . .+|++ +.||.++.+..+..
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~--G---riL~d-~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYA--G---RILED-NKTLSDCRLPSGET 76 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEET--T---EEE-S-SSBTGGGT--TTSE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeC--C---eecCC-cCcHHHhCCCCCCC
Confidence 46676665334478899999999999999998643 11 1 246777632 2 35664 67899998887664
Q ss_pred ----EEEEEEe
Q 002757 224 ----ILLELQI 230 (884)
Q Consensus 224 ----illE~~~ 230 (884)
+++.+..
T Consensus 77 ~~~~~vmHlvv 87 (111)
T PF13881_consen 77 PGGPTVMHLVV 87 (111)
T ss_dssp TT--EEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 7777764
No 124
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=33.46 E-value=2.6e+02 Score=25.07 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=42.6
Q ss_pred EEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEecce
Q 002757 472 LTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQ 524 (884)
Q Consensus 472 v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~ 524 (884)
+.+.|.-....++-+.|+..|+++..+++..+-...++......+++||....
T Consensus 13 l~IyP~~~a~~~~~C~v~a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkEsG 65 (105)
T cd01779 13 LHIYPQLIAESTISCRVTATKDSTAADVIDDVIASLQLDGTKCYVLAEVKESG 65 (105)
T ss_pred EEEccCCCCCCceEeEeEeccCCcHHHHHHHHHHHhCcCccccEEEEEeeccC
Confidence 33444444445677788999999999999999999999999999999998764
No 125
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=33.30 E-value=2.9e+02 Score=27.77 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=45.2
Q ss_pred ceEEEEEEeccCCeeEEEEcccccHHHHHHHHHhHcCCCC-ccEEEEEecCCcce-eeccCCCccchhhc
Q 002757 150 PLQLRLSVMRETNSLGVKISKKDNAVELFKRACKIFSIES-ELLHIWDFSGQTTL-YFLNDKNKFSKDCL 217 (884)
Q Consensus 150 P~~l~l~~~~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~-~~~RlW~~~~~~~~-~~L~~~~~tl~~~~ 217 (884)
|..++|.. .|+....+.+....|+.++.+.+|+.++|.. .-+-||........ ..++ ...++.+..
T Consensus 3 ~~~~~V~l-~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~-~~~~l~~~~ 70 (207)
T smart00295 3 PRVLKVYL-LDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLD-PAKTLLDQD 70 (207)
T ss_pred cEEEEEEe-cCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCC-CccCHHHhc
Confidence 45666665 4566778999999999999999999999974 45788866554333 2333 234455543
No 126
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=32.88 E-value=2.4e+02 Score=24.31 Aligned_cols=66 Identities=17% Similarity=0.093 Sum_probs=45.4
Q ss_pred EEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcC-CCCceEEEE-EEecceeEEcccCCcccc
Q 002757 471 TLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACAL-GVNETLLVA-EIYNHQIIRYLEEPADSI 536 (884)
Q Consensus 471 ~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~-~~~~~l~~~-e~~~~~~~~~~~~~~~~~ 536 (884)
.+.|+..++.....-.++.+++..+..++++.+.+.+++ .+.....++ ....+...+.+.+...++
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl 71 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPL 71 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHH
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchH
Confidence 345666666655556788999999999999999999999 455566665 334455566666544443
No 127
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=32.25 E-value=96 Score=33.10 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=32.6
Q ss_pred EEEEEEe--ccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecC
Q 002757 152 QLRLSVM--RETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSG 199 (884)
Q Consensus 152 ~l~l~~~--~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~ 199 (884)
.+++... ++...+++.+|+..|..+|.+.|-+.++++++.+|+|..+.
T Consensus 178 ~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~ 227 (249)
T PF12436_consen 178 EVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNP 227 (249)
T ss_dssp EEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---T
T ss_pred EEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEecc
Confidence 4444442 23457899999999999999999999999999999998765
No 128
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=31.97 E-value=2.3e+02 Score=24.62 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=32.8
Q ss_pred cCCeeEEEEcccccHHHHHHHHHhHcCCCC--ccEEEEEec
Q 002757 160 ETNSLGVKISKKDNAVELFKRACKIFSIES--ELLHIWDFS 198 (884)
Q Consensus 160 ~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~--~~~RlW~~~ 198 (884)
+....++.+++..|..++...+.+.|+++. .++.|+...
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~ 54 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVL 54 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEe
Confidence 356789999999999999999999999985 467777654
No 129
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=31.30 E-value=1.5e+02 Score=31.61 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=24.6
Q ss_pred ccCCCcccHHHHHHHHhCChHHHHHHH
Q 002757 287 QNLGNTCFMNSALQCLVHTPKLVDYFL 313 (884)
Q Consensus 287 ~NlGNTCYmNSvLQ~L~~~p~f~~~~l 313 (884)
.|.-|-|++-++|=+|.|+..+++..-
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~ 32 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVT 32 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHh
Confidence 588899999999999999999999774
No 130
>COG3651 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.17 E-value=32 Score=30.84 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.2
Q ss_pred cCCCCCCCeEEEEchHHH
Q 002757 24 NNNNDNDQRVYLVPYRWW 41 (884)
Q Consensus 24 ~~~~~~g~~~ylIs~~W~ 41 (884)
-.+|++||+|+|...+|=
T Consensus 73 fpglkpgdrwclcaarwq 90 (125)
T COG3651 73 FPGLKPGDRWCLCAARWQ 90 (125)
T ss_pred CCCCCCCCeeeeeHHHHH
Confidence 358999999999998863
No 131
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=29.51 E-value=2.4e+02 Score=24.49 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=25.8
Q ss_pred eEEEeCCCCCHHHHHHHHHHHhcCCCCceEE
Q 002757 486 FTITVPKYGKFEDLIRALSIACALGVNETLL 516 (884)
Q Consensus 486 ~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 516 (884)
.+.++++..++.+|++.|...+|+++..+-+
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL 45 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRL 45 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEE
Confidence 4556899999999999999999998765444
No 132
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=29.17 E-value=68 Score=31.81 Aligned_cols=31 Identities=35% Similarity=0.595 Sum_probs=22.2
Q ss_pred EEEEEeee-cCCCCeEEEEEEc-CCCCEEEEcC
Q 002757 826 YAVSNHYG-SMGGGHYTAFVHH-GGGQWYDFDD 856 (884)
Q Consensus 826 ~aVinH~G-~l~gGHYtAy~k~-~~~~Wy~fnD 856 (884)
.||||--| ..||=|+.|++.+ ...+.|.||=
T Consensus 21 cAIVNT~~retGGvHWlA~Aw~P~s~t~YmFDP 53 (183)
T PF00770_consen 21 CAIVNTGGRETGGVHWLAFAWDPRSRTFYMFDP 53 (183)
T ss_dssp EEEEESS-TTT--S-EEEEEEETTTTEEEEE-T
T ss_pred eEEEecCCcccCceeEEEEEecCCcceEEEeCC
Confidence 78999888 6888899999999 5678999873
No 133
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=27.87 E-value=3.5e+02 Score=23.16 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=46.2
Q ss_pred ccCCeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEEEEE
Q 002757 159 RETNSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEILLEL 228 (884)
Q Consensus 159 ~~~~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~illE~ 228 (884)
+++....+.+-.-.|++|.+.++.+..+|.++-+.++...+.......-+++ .+++...+..+.+|+
T Consensus 7 PnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~~~~~~~~~~~i~W~---td~~~L~geEL~V~~ 73 (74)
T cd01816 7 PNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFRLGDGSSKKLRIDWD---TDISSLIGEELQVEV 73 (74)
T ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEEcCCCcccccccchh---hhhhhccCceEEEEe
Confidence 5666778899999999999999999999999999999775433211111221 133344456666664
No 134
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=27.36 E-value=22 Score=41.88 Aligned_cols=103 Identities=15% Similarity=0.079 Sum_probs=53.3
Q ss_pred cCccccccCCCcccHHHHHHHHhCChHHHHHHHhc---cccccCCCCCCCCchHHHHHHHHHHHHHcCC-CCCCcChHHH
Q 002757 281 LGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD---YFREINHDNPLGMDGEIALAFGDLLRKLWAP-GAAPVSPRTF 356 (884)
Q Consensus 281 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~---~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~-~~~~i~p~~~ 356 (884)
.-..|+.+.+|||+||+.+|.++.++.|.-..-.. .......... ..-....+..+...+-.. ......|. .
T Consensus 75 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~t~~~~~~~-~ 150 (492)
T KOG1867|consen 75 LEHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIKKYKEQPF---HQLDSTLLTHLAEATVCQQTLLKENPK-D 150 (492)
T ss_pred ccccccccccccceeehhhheeccCCcEeeccchhhHHHHHhhhccch---hhccchhhhhhhhhhccchhcccCCcc-c
Confidence 45688899999999999999999998765332110 0000000000 000111111111111111 01112222 1
Q ss_pred HHHHhhhCCCCCCCCCCCHHHHHHHHHHHHH
Q 002757 357 KSKLARFAPQFSGFNQHDSQELLAFLLDGLH 387 (884)
Q Consensus 357 ~~~l~~~~~~F~~~~QqDA~EfL~~LLd~L~ 387 (884)
........-.+.|..-+++.+|+..+|..|.
T Consensus 151 ~~~~~~~~~~l~g~~n~g~tcfmn~ilqsl~ 181 (492)
T KOG1867|consen 151 RLVLSTTALGLRGLRNLGSTCFMNVILQSLL 181 (492)
T ss_pred ccccceeeecccccccccHHHHHHHHHHHhh
Confidence 1222333446778889999999999999986
No 135
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=26.81 E-value=2.5e+02 Score=24.04 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=49.5
Q ss_pred CeeEEEEcccccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhhccCCCceEE-EE
Q 002757 162 NSLGVKISKKDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLSDHEIL-LE 227 (884)
Q Consensus 162 ~~~~~~~Sk~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~q~il-lE 227 (884)
...++.+...++|+.+++++.+..++.. .-||-.........+|.. ..||.+.++-++-.|. +|
T Consensus 11 ~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s-~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 11 SDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSS-RKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccc-cccHhhhcceeccEEEEEe
Confidence 4567889999999999999999999986 567776665555566655 5689999988876654 44
No 136
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=26.71 E-value=3.5e+02 Score=26.89 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=40.1
Q ss_pred EEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEEEEEeccee
Q 002757 472 LTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAEIYNHQI 525 (884)
Q Consensus 472 v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~ 525 (884)
|.|-..+|...|..+.+.++...++.+|+..+...+++.....+++.-..+..+
T Consensus 3 Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l 56 (162)
T PF13019_consen 3 VLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQL 56 (162)
T ss_pred EEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCee
Confidence 444456677777888888999999999999999999888766555554444443
No 137
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=24.65 E-value=1.7e+02 Score=25.36 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=26.8
Q ss_pred cccHHHHHHHHHhHcCCCCccEEEEEecCCc
Q 002757 171 KDNAVELFKRACKIFSIESELLHIWDFSGQT 201 (884)
Q Consensus 171 ~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~ 201 (884)
..++.||+.++|..|+++...++|....+.+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGT 50 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGT 50 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCc
Confidence 5689999999999999998889999776655
No 138
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=24.57 E-value=2.9e+02 Score=25.10 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=39.2
Q ss_pred cCceeEEeeCCCCcceeEEEEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceE
Q 002757 453 DPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETL 515 (884)
Q Consensus 453 epf~~LsLplp~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l 515 (884)
|....+.++++... .+.++|-...|. .+.+++....++.++++.++...|++.+..-
T Consensus 13 ~~~~~~~~~~~~~~--~M~I~Vk~l~G~----~~~leV~~~~TV~~lK~kI~~~~gip~~~Qr 69 (103)
T cd01802 13 DNMGPFHYKLPFYD--TMELFIETLTGT----CFELRVSPFETVISVKAKIQRLEGIPVAQQH 69 (103)
T ss_pred CCcceeEEeeccCC--CEEEEEEcCCCC----EEEEEeCCCCcHHHHHHHHHHHhCCChHHEE
Confidence 34445566665443 455655555554 3667889999999999999999888765443
No 139
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=23.77 E-value=3e+02 Score=23.38 Aligned_cols=32 Identities=9% Similarity=-0.041 Sum_probs=26.0
Q ss_pred ceEEEeCCCCCHHHHHHHHHHHhcCCCCceEE
Q 002757 485 PFTITVPKYGKFEDLIRALSIACALGVNETLL 516 (884)
Q Consensus 485 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 516 (884)
...+.+....++.+++..+....|+++..+-+
T Consensus 14 t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL 45 (75)
T cd01799 14 TIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW 45 (75)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE
Confidence 45677888899999999999999998765433
No 140
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=23.75 E-value=2.3e+02 Score=26.31 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=37.9
Q ss_pred CCeeEEEEcccccHHHHHHHHHhHcC-------CCCccEEEEEecCCcceeeccCCCccchhhccCC
Q 002757 161 TNSLGVKISKKDNAVELFKRACKIFS-------IESELLHIWDFSGQTTLYFLNDKNKFSKDCLRLS 220 (884)
Q Consensus 161 ~~~~~~~~Sk~~ti~~l~~~v~~~f~-------i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~ 220 (884)
+..-.+.++..+|+.+|++++-.... .+.++.||- |. ...|++ ++||.++++..
T Consensus 15 ~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLI-ys----GKiLeD-~~TL~d~~~p~ 75 (113)
T cd01814 15 SDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLI-SA----GKILEN-SKTVGECRSPV 75 (113)
T ss_pred CccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEE-eC----CeecCC-CCcHHHhCCcc
Confidence 34456888999999999999987663 335677776 22 235655 57899998443
No 141
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=23.01 E-value=69 Score=26.57 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=21.4
Q ss_pred ccCCCCCCcceeEEEEEee--ecCCeEEEEEeceee
Q 002757 754 WYCPGCKKHCQASKKLDLW--RLPEILVIHLKRFSY 787 (884)
Q Consensus 754 w~C~~Ck~~~~A~Kk~~i~--~lP~iLiIhLKRF~~ 787 (884)
|.||+|+...-..+.+..- -+-.++=|+.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 7899999865544444432 234466777777763
No 142
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=20.77 E-value=2.5e+02 Score=23.19 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCcceEEEeCCCCCHHHHHHHHHHHhcCCCCceEE
Q 002757 472 LTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLL 516 (884)
Q Consensus 472 v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 516 (884)
++|-..+|.. ..++++...++.++++.+....+++..+.-+
T Consensus 3 i~v~~~~g~~----~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL 43 (76)
T cd01806 3 IKVKTLTGKE----IEIDIEPTDKVERIKERVEEKEGIPPQQQRL 43 (76)
T ss_pred EEEEeCCCCE----EEEEECCCCCHHHHHHHHhHhhCCChhhEEE
Confidence 4444455543 4567888999999999999999988765433
No 143
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=20.41 E-value=1.7e+02 Score=23.88 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=27.4
Q ss_pred ceEEEeCCCCCHHHHHHHHHHHhcCCCCceEEE
Q 002757 485 PFTITVPKYGKFEDLIRALSIACALGVNETLLV 517 (884)
Q Consensus 485 ~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 517 (884)
.+.++++.+.++.+|++.++...+++.....++
T Consensus 7 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~ 39 (69)
T PF00240_consen 7 TFTLEVDPDDTVADLKQKIAEETGIPPEQQRLI 39 (69)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEE
T ss_pred EEEEEECCCCCHHHhhhhcccccccccccceee
Confidence 467888999999999999999999887654443
No 144
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=20.29 E-value=3.3e+02 Score=23.74 Aligned_cols=56 Identities=9% Similarity=-0.003 Sum_probs=36.5
Q ss_pred eccCCeeEEEEcc--cccHHHHHHHHHhHcCCCCccEEEEEecCCcceeeccCCCccchhh
Q 002757 158 MRETNSLGVKISK--KDNAVELFKRACKIFSIESELLHIWDFSGQTTLYFLNDKNKFSKDC 216 (884)
Q Consensus 158 ~~~~~~~~~~~Sk--~~ti~~l~~~v~~~f~i~~~~~RlW~~~~~~~~~~L~~~~~tl~~~ 216 (884)
..++....+.++. ..+..+|...+.+.|+++ .+.|==..+.+....+.. +.-|+++
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKYlDde~e~v~lss-d~eLeE~ 63 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKYVDEENEEVSVNS-QGEYEEA 63 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEEEcCCCCEEEEEc-hhhHHHH
Confidence 3456667788877 779999999999999999 554443334444444433 2225555
Done!