Query 002757
Match_columns 884
No_of_seqs 285 out of 2184
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 17:20:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002757.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1473-1477//hhsearch_pdb/002757hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 1.0 1 1 661.3 35.8 355 279-882 4-360 (367)
2 2gfo_A Ubiquitin carboxyl-term 1.0 1 1 632.6 30.1 337 279-881 58-396 (396)
3 3nhe_A Ubiquitin carboxyl-term 1.0 1 1 582.1 34.6 338 279-883 5-345 (348)
4 3i3t_A Ubiquitin carboxyl-term 1.0 1 1 577.4 28.0 336 281-883 1-353 (355)
5 2ayn_A Ubiquitin carboxyl-term 1.0 1 1 534.4 22.5 318 280-881 11-394 (404)
6 3mhs_A Ubiquitin carboxyl-term 1.0 1 1 533.5 28.9 316 278-881 136-474 (476)
7 1nb8_A Ubiquitin carboxyl-term 1.0 1 1 532.6 26.6 296 280-882 3-316 (353)
8 2f1z_A Ubiquitin carboxyl-term 1.0 1 1 531.3 24.5 297 279-882 171-485 (522)
9 3ihp_A Ubiquitin carboxyl-term 1.0 1 1 531.1 27.8 330 277-881 338-853 (854)
10 1vjv_A Ubiquitin carboxyl-term 1.0 1 1 511.8 26.1 297 278-881 19-414 (415)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=661.33 Aligned_cols=355 Identities=59% Similarity=1.008 Sum_probs=323.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 7767444203899631789999982874799999822-311127899999906899999999999719999876969999
Q 002757 279 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFK 357 (884)
Q Consensus 279 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~~l~~-~~~~~n~~n~~~~~~~l~~~l~~Ll~~l~~~~~~~i~p~~~~ 357 (884)
..+|++||.|+||||||||+||||+|+|+|+++|+.. +..+++..+|+++.+.++.+|+.|+.+||.+...+++|..|+
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 89898087648856498999999977799999997372255504469888642999999999999974899873879999
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 99963099889899877899999999999987310137887534699999908999999998540579842014653999
Q 002757 358 SKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYK 437 (884)
Q Consensus 358 ~~i~~~~~~F~g~~QqDa~Efl~~LLd~L~edln~~~~kpy~e~~d~dg~~d~~~a~e~W~~~~~rn~SiI~dlF~G~l~ 437 (884)
.++++..++|.+++||||||||.+|||.||++++++.++|+++.++.+|.+|.++|.++|.++..++.|+|.++|+|+++
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 99997404108987878799999999999999875125776445565679606778999999887069823013376884
Q ss_pred EEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 79982899973331058523875089984003799999089999882138980799998999999998823798860899
Q 002757 438 STLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLV 517 (884)
Q Consensus 438 stl~C~~C~~~SvtfdpF~~LSLplP~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 517 (884)
++++|..|+++|+++|||++||||||....+.+.+.
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~-------------------------------------------- 199 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGP-------------------------------------------- 199 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-----------------------------------------------------
T ss_pred EEEEECCCCCEEEEECCCEEEEEECCCCCCCCCEEE--------------------------------------------
T ss_conf 358908999985337567057731798767750133--------------------------------------------
Q ss_pred EEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCH
Q ss_conf 99734526871248733233458899199999367899997399984013666512876788722485389996366685
Q 002757 518 AEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHG 597 (884)
Q Consensus 518 ~ei~~~~~~~~~~~~~~~~~~i~~~~~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~ 597 (884)
+
T Consensus 200 ----------~--------------------------------------------------------------------- 200 (367)
T 2y6e_A 200 ----------M--------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------E---------------------------------------------------------------------
T ss_conf ----------2---------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 77999999870876568656578876899830333310035533589988788987779999973017974699973465
Q 002757 598 LDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNS 677 (884)
Q Consensus 598 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 677 (884)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 22357554347999714999972621353101112256621102588899999988899999981085425999941288
Q 002757 678 KIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCP 757 (884)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~wyC~ 757 (884)
|.+. ......++|++||+.|+.+|.|+++|.|+|+
T Consensus 201 ----------------------~~~~-----------------------~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~ 235 (367)
T 2y6e_A 201 ----------------------LQPQ-----------------------KKKKTTVALRDCIELFTTMETLGEHDPWYCP 235 (367)
T ss_dssp ------------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEEET
T ss_pred ----------------------ECCC-----------------------CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf ----------------------0564-----------------------4567888899999986161647899872487
Q ss_pred CCCCCCEEEEEEEEEECCCEEEEEEECEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 98885203899993005984899971336404301343126741467888655323458887844889999993102799
Q 002757 758 GCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGG 837 (884)
Q Consensus 758 ~Ck~~~~AtKk~~iw~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~YdL~AV~nH~G~l~g 837 (884)
+|++++.|+|++.|+++|+||+||||||.++++.+.|+++.|.||++.|||++|+..+.. ....|+|+||++|+|++++
T Consensus 236 ~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~~~ 314 (367)
T 2y6e_A 236 NCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA-RPYVYDLIAVSNHYGAMGV 314 (367)
T ss_dssp TTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS-CCCEEEEEEEEEEECSSSS
T ss_pred CCCCCCEEEEEEEEECCCCEEEEEEECEEECCCCCEECCCEEEECCCCCCHHHHCCCCCC-CCCEEEEEEEEECCCCCCC
T ss_conf 878875078998882488578999847650576633537638931776775664258788-9714889988562899988
Q ss_pred CEEEEEEEC-CCCCEEEECCCCCEECCCCCCCCCCEEEEEEEEECC
Q ss_conf 749999992-899899975995202192324699808999899158
Q 002757 838 GHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVE 882 (884)
Q Consensus 838 GHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~~~~AYvLFY~R~~~ 882 (884)
|||+||+|+ .+++||+|||+.|+++++++|.+..||||||+|++.
T Consensus 315 GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 315 GHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDD 360 (367)
T ss_dssp CEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC
T ss_pred CEEEEEEECCCCCEEEEECCCCCEECCHHHCCCCCCEEEEEEECCC
T ss_conf 7366788769999089977987339988886889737999997389
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=1.00 E-value=1 Score=632.61 Aligned_cols=337 Identities=47% Similarity=0.845 Sum_probs=315.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 7767444203899631789999982874799999822-311127899999906899999999999719999876969999
Q 002757 279 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFK 357 (884)
Q Consensus 279 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~~l~~-~~~~~n~~n~~~~~~~l~~~l~~Ll~~l~~~~~~~i~p~~~~ 357 (884)
..+|++||.|+||||||||+||||+|+|+|++||+.. +..+++..++++..+.++.+|+.|++.||.+....++|..|+
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECHHHHH
T ss_conf 87786665616874167299998537889999997074213312358777410999999999999970998437789999
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 99963099889899877899999999999987310137887534699999908999999998540579842014653999
Q 002757 358 SKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYK 437 (884)
Q Consensus 358 ~~i~~~~~~F~g~~QqDa~Efl~~LLd~L~edln~~~~kpy~e~~d~dg~~d~~~a~e~W~~~~~rn~SiI~dlF~G~l~ 437 (884)
.+++...++|.+++||||||||.+|||.||+++++...+++.+.++.++.++.+.|.++|..+..++.|+|.++|+|+++
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCEEE
T ss_conf 99997454334878877599999999999999865314554455555566425677899987665068834020086887
Q ss_pred EEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 79982899973331058523875089984003799999089999882138980799998999999998823798860899
Q 002757 438 STLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLV 517 (884)
Q Consensus 438 stl~C~~C~~~SvtfdpF~~LSLplP~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 517 (884)
++++|..|++.|+++|||++|+||||...
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~--------------------------------------------------- 246 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLASTS--------------------------------------------------- 246 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCSS---------------------------------------------------
T ss_pred EEEEECCCCCEECCCCCCEEEEECCCCCC---------------------------------------------------
T ss_conf 77885799962032446312333266346---------------------------------------------------
Q ss_pred EEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCH
Q ss_conf 99734526871248733233458899199999367899997399984013666512876788722485389996366685
Q 002757 518 AEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHG 597 (884)
Q Consensus 518 ~ei~~~~~~~~~~~~~~~~~~i~~~~~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~ 597 (884)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 77999999870876568656578876899830333310035533589988788987779999973017974699973465
Q 002757 598 LDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNS 677 (884)
Q Consensus 598 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 677 (884)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 22357554347999714999972621353101112256621102588899999988899999981085425999941288
Q 002757 678 KIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCP 757 (884)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~wyC~ 757 (884)
.++|++||+.|+.+|.|+++|.|+|+
T Consensus 247 ------------------------------------------------------~~sL~~~L~~f~~~E~l~~~n~~~C~ 272 (396)
T 2gfo_A 247 ------------------------------------------------------KCTLQDCLRLFSKEEKLTDNNRFYCS 272 (396)
T ss_dssp ------------------------------------------------------EEEHHHHHHHHTSCEEECSTTCEEET
T ss_pred ------------------------------------------------------CCCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf ------------------------------------------------------57999999983772251687641157
Q ss_pred CCCCCCEEEEEEEEEECCCEEEEEEECEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 98885203899993005984899971336404301343126741467888655323458887844889999993102799
Q 002757 758 GCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGG 837 (884)
Q Consensus 758 ~Ck~~~~AtKk~~iw~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~YdL~AV~nH~G~l~g 837 (884)
+|++++.|+|++.|+++|+||+||||||.++..++.|+++.|.||++.|||++|+..+.. ....|+|+||++|+|++++
T Consensus 273 ~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~~~ 351 (396)
T 2gfo_A 273 HCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKN-NLKKYNLFSVSNHYGGLDG 351 (396)
T ss_dssp TTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCS-SCCCBEEEEEEEEESCTTT
T ss_pred CCCCCCCEEEEEEEECCCCEEEEEECCEECCCCCCEECCCEEECCHHHCCCCCCCCCCCC-CCCEEEEEEEEEECCCCCC
T ss_conf 755545358999980378579998501102576100167448545342456643347777-8735889999985699999
Q ss_pred CEEEEEEEC-CCCCEEEECCCCCEECCCCCCCCCCEEEEEEEEEC
Q ss_conf 749999992-89989997599520219232469980899989915
Q 002757 838 GHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVV 881 (884)
Q Consensus 838 GHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~~~~AYvLFY~R~~ 881 (884)
|||+||+|+ .+++||.|||+.|+++++++|.+.+||||||+|++
T Consensus 352 GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 352 GHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp CEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred CCEEEEECCCCCCCEEEEECCCEEECCHHHCCCCCCEEEEEEECC
T ss_conf 830799857999987997488738988888689985699999759
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=1.00 E-value=1 Score=582.14 Aligned_cols=338 Identities=43% Similarity=0.772 Sum_probs=308.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHH
Q ss_conf 7767444203899631789999982874799999822-31112789999990689999999999971-999987696999
Q 002757 279 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLW-APGAAPVSPRTF 356 (884)
Q Consensus 279 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~~l~~-~~~~~n~~n~~~~~~~l~~~l~~Ll~~l~-~~~~~~i~p~~~ 356 (884)
..+|++||.|+||||||||+||||+|+|+|+++++.. +...++. .......++.+|+.|+..|| ......++|..|
T Consensus 5 ~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~--~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~ 82 (348)
T 3nhe_A 5 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHH--GSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEF 82 (348)
T ss_dssp -CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCS--SCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCHHHHHHCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 899997787588347988999999667999999852446676146--887311899999999999971789872489999
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 99996309988989987789999999999998731013788753469999990899999999854057984201465399
Q 002757 357 KSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQY 436 (884)
Q Consensus 357 ~~~i~~~~~~F~g~~QqDa~Efl~~LLd~L~edln~~~~kpy~e~~d~dg~~d~~~a~e~W~~~~~rn~SiI~dlF~G~l 436 (884)
+.+++...+.|.+++||||||||.+|||.||++++++..++.....+.++.++.+.+.+.|..+..++.|+|.++|+|++
T Consensus 83 ~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~ 162 (348)
T 3nhe_A 83 KTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQL 162 (348)
T ss_dssp HHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEE
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 99999860640798744799999999999999875304678877522246882277899999987506984555512499
Q ss_pred EEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 97998289997333105852387508998400379999908999988213898079999899999999882379886089
Q 002757 437 KSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLL 516 (884)
Q Consensus 437 ~stl~C~~C~~~SvtfdpF~~LSLplP~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 516 (884)
+++++|..|++.|.++|||++|+||+|....
T Consensus 163 ~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~------------------------------------------------- 193 (348)
T 3nhe_A 163 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGY------------------------------------------------- 193 (348)
T ss_dssp EEEEEETTTCCEEEEEEEESSEEECCCSSCS-------------------------------------------------
T ss_pred EEEEECCCCCCEEEEECCCEEEEEECCCCCC-------------------------------------------------
T ss_conf 9899948999886444465477642798556-------------------------------------------------
Q ss_pred EEEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 99973452687124873323345889919999936789999739998401366651287678872248538999636668
Q 002757 517 VAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAH 596 (884)
Q Consensus 517 ~~ei~~~~~~~~~~~~~~~~~~i~~~~~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~ 596 (884)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 57799999987087656865657887689983033331003553358998878898777999997301797469997346
Q 002757 597 GLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKN 676 (884)
Q Consensus 597 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 676 (884)
T Consensus 194 -------------------------------------------------------------------------------- 193 (348)
T 3nhe_A 194 -------------------------------------------------------------------------------- 193 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 52235755434799971499997262135310111225662110258889999998889999998108542599994128
Q 002757 677 SKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYC 756 (884)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~wyC 756 (884)
..++|++||+.|+.+|.++++|.|+|
T Consensus 194 ------------------------------------------------------~~~sl~~~L~~~~~~e~l~~~~~~~C 219 (348)
T 3nhe_A 194 ------------------------------------------------------PEVTLMDCMRLFTKEDVLDGDEKPTC 219 (348)
T ss_dssp ------------------------------------------------------SCEEHHHHHHHHHSCEEECGGGCCEE
T ss_pred ------------------------------------------------------CCCCHHHHHHHHCCCEEECCCCCEEC
T ss_conf ------------------------------------------------------77789999987468057168885678
Q ss_pred CCCCCCCEEEEEEEEEECCCEEEEEEECEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 89888520389999300598489997133640430134312674146788865532345888784488999999310279
Q 002757 757 PGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMG 836 (884)
Q Consensus 757 ~~Ck~~~~AtKk~~iw~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~YdL~AV~nH~G~l~ 836 (884)
++|++.+.|+|++.|+++|+||+||||||.+......|+.+.|.||++.|||++|+.... ....|+|+||++|.|+..
T Consensus 220 ~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~--~~~~Y~L~avv~H~G~~~ 297 (348)
T 3nhe_A 220 CRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT--NHAVYNLYAVSNHSGTTM 297 (348)
T ss_dssp TTTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC--CCCEEEEEEEEEEEECSS
T ss_pred CCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCEEECCCCEECCCCCCCHHHHCCCCC--CCCCEEEEEEEECCCCCC
T ss_conf 888885648999881329865799987534567741456862303477587766067888--998679999997048999
Q ss_pred CCEEEEEEEC-CCCCEEEECCCCCEECCCCCCCCCCEEEEEEEEECCC
Q ss_conf 9749999992-8998999759952021923246998089998991589
Q 002757 837 GGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVEV 883 (884)
Q Consensus 837 gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~~~~AYvLFY~R~~~~ 883 (884)
+|||+||+|+ .+++||+|||+.|+++++++|.+..||||||+|++..
T Consensus 298 ~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 298 GGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPP 345 (348)
T ss_dssp CEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC--
T ss_pred CCCCEEEECCCCCCCEEEEECCCCEECCHHHCCCCCCEEEEEEECCCC
T ss_conf 964388881699893799838980699888857898369999964877
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=1.00 E-value=1 Score=577.43 Aligned_cols=336 Identities=40% Similarity=0.678 Sum_probs=297.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCHHHHHH
Q ss_conf 67444203899631789999982874799999822-311127899999906899999999999719999-8769699999
Q 002757 281 LGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGD-YFREINHDNPLGMDGEIALAFGDLLRKLWAPGA-APVSPRTFKS 358 (884)
Q Consensus 281 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~~l~~-~~~~~n~~n~~~~~~~l~~~l~~Ll~~l~~~~~-~~i~p~~~~~ 358 (884)
.|.+||.|+||||||||+||||+|+|+|+++++.. +....+. .+...+++.+|+.|+..||.+.. .+++|..|+.
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~---~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~ 77 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPG---GGRAQELTEAFADVIGALWHPDSCEAVNPTRFRA 77 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHH
T ss_pred CCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCHHHHHCCC---CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 9974758898266989999998678999999972548875678---9952699999999999984589887445899999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------CCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99630998898998778999999999999873101378875346---------------999999089999999985405
Q 002757 359 KLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAK---------------DGDGRSDEDIADEYWQNHLAR 423 (884)
Q Consensus 359 ~i~~~~~~F~g~~QqDa~Efl~~LLd~L~edln~~~~kpy~e~~---------------d~dg~~d~~~a~e~W~~~~~r 423 (884)
++++..+.|.+++||||||||.+|||.||+++++..+++..... .....++.+.+.+.|..+..+
T Consensus 78 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T 3i3t_A 78 VFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLER 157 (355)
T ss_dssp HHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99973842289876678999999999999997654137875235676667644443223577788788999999985231
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 79842014653999799828999733310585238750899840037999990899998821389807999989999999
Q 002757 424 NDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRAL 503 (884)
Q Consensus 424 n~SiI~dlF~G~l~stl~C~~C~~~SvtfdpF~~LSLplP~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l 503 (884)
+.|+|.++|+|++++++.|..|++.+.+++||++|+||+|....
T Consensus 158 ~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~------------------------------------ 201 (355)
T 3i3t_A 158 EDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGF------------------------------------ 201 (355)
T ss_dssp CCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC---------------------------------------
T ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCEEECCCEEECCCCCCCCC------------------------------------
T ss_conf 69815453357999558938999984022223465256786444------------------------------------
Q ss_pred HHHHCCCCCCEEEEEEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCC
Q ss_conf 98823798860899997345268712487332334588991999993678999973999840136665128767887224
Q 002757 504 SIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNAL 583 (884)
Q Consensus 504 ~~~~~~~~~~~l~~~ei~~~~~~~~~~~~~~~~~~i~~~~~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (884)
.
T Consensus 202 ------~------------------------------------------------------------------------- 202 (355)
T 3i3t_A 202 ------A------------------------------------------------------------------------- 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------C-------------------------------------------------------------------------
T ss_conf ------5-------------------------------------------------------------------------
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 85389996366685779999998708765686565788768998303333100355335899887889877799999730
Q 002757 584 GIPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAEL 663 (884)
Q Consensus 584 g~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 663 (884)
T Consensus 203 -------------------------------------------------------------------------------- 202 (355)
T 3i3t_A 203 -------------------------------------------------------------------------------- 202 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 17974699973465223575543479997149999726213531011122566211025888999999888999999810
Q 002757 664 QFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFL 743 (884)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~ 743 (884)
...++|++||+.|+
T Consensus 203 ------------------------------------------------------------------~~~~sl~~~L~~~~ 216 (355)
T 3i3t_A 203 ------------------------------------------------------------------GGKVSLRDCFNLFT 216 (355)
T ss_dssp ---------------------------------------------------------------------CBHHHHHHHHH
T ss_pred ------------------------------------------------------------------CCCCCHHHHHHHHC
T ss_conf ------------------------------------------------------------------67658999999857
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 85425999941288988852038999930059848999713364043013431267414678886553234588878448
Q 002757 744 TEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRFSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRY 823 (884)
Q Consensus 744 ~~E~L~~~d~wyC~~Ck~~~~AtKk~~iw~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~Y 823 (884)
++|.++++|.|+|++|++++.|+|++.|+++|+||+||||||.+++....|+.+.|.||++.|||++|+.... ....|
T Consensus 217 ~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~--~~~~Y 294 (355)
T 3i3t_A 217 KEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA--GSPVY 294 (355)
T ss_dssp CCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC------CCEE
T ss_pred CCCCCCCCCCEECCCCCCCCCEEEEEECCCCCHHEEEEHHHEECCCCCCEECCCCEECCCCCCCCHHHCCCCC--CCCCE
T ss_conf 8354589998559887886623799881139813099760200378980478861607765467302115899--99645
Q ss_pred EEEEEEEEEECCCCCEEEEEEECCCCCEEEECCCCCEECCCCCCCCCCEEEEEEEEECCC
Q ss_conf 899999931027997499999928998999759952021923246998089998991589
Q 002757 824 MLYAVSNHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVVEV 883 (884)
Q Consensus 824 dL~AV~nH~G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~v~~~~v~~~~AYvLFY~R~~~~ 883 (884)
+|+||++|.|++++|||+||+|.. ++||+|||+.|+++++++|.+.+||||||+|+++.
T Consensus 295 ~L~avv~H~G~~~~GHY~~~~~~~-~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 295 QLYALCNHSGSVHYGHYTALCRCQ-TGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 353 (355)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEET-TEEEEEETTEEEEECHHHHHTSCCSEEEEEEC---
T ss_pred EEEEEEEECCCCCCCEEEEEEECC-CEEEEECCCCCEECCHHHCCCCCCEEEEEEECCCC
T ss_conf 999998826789998079999729-92899819871798899907898679999960688
No 5
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=1.00 E-value=1 Score=534.42 Aligned_cols=318 Identities=25% Similarity=0.348 Sum_probs=270.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 76744420389963178999998287479999982231112789999990689999999999971999987696999999
Q 002757 280 CLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSK 359 (884)
Q Consensus 280 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~~l~~~~~~~n~~n~~~~~~~l~~~l~~Ll~~l~~~~~~~i~p~~~~~~ 359 (884)
..+++||.|+||||||||+||||+|+|+|+++|+..... .....+.....+++++|+.|+..||.+. .+++|..|+.+
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~ 88 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGA-LRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQF 88 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCC-C------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCHHHHHHH
T ss_conf 699988654770439899999987689999999964510-1347888854389999999999986389-83886999999
Q ss_pred HHHHCCCCC------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 963099889------89987789999999999998731013788753469999990899999999854057984201465
Q 002757 360 LARFAPQFS------GFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQ 433 (884)
Q Consensus 360 i~~~~~~F~------g~~QqDa~Efl~~LLd~L~edln~~~~kpy~e~~d~dg~~d~~~a~e~W~~~~~rn~SiI~dlF~ 433 (884)
++...|+|. +++||||||||.+|||.||++++.....+ +..+ -+..+|..+..++.++|.++|+
T Consensus 89 l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~-------~~e~---~~~~~~~~~~~~~~s~i~~~F~ 158 (404)
T 2ayn_A 89 LHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDS-------VKET---DSSSASAATPSKKKSLIDQFFG 158 (404)
T ss_dssp HHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC----------------------------CCHHHHHTC
T ss_pred HHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-------CCCC---CHHHHHHHHCCCCCCHHHHHCC
T ss_conf 98857002023567886654899999999999998744356775-------2210---0122100000113760245156
Q ss_pred EEEEEEEECCCCCCEE--EEECCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 3999799828999733--31058523875089984003799999089999882138980799998999999998823798
Q 002757 434 GQYKSTLVCPVCKKVS--VTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGV 511 (884)
Q Consensus 434 G~l~stl~C~~C~~~S--vtfdpF~~LSLplP~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~ 511 (884)
|+++++++|..|++.| +++|||++|+||||..
T Consensus 159 G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~---------------------------------------------- 192 (404)
T 2ayn_A 159 VEFETTMKCTESEEEEVTKGKENQLQLSCFINQE---------------------------------------------- 192 (404)
T ss_dssp EEEEEEEEESSSCCCCCBCCEEEESSEEEECSSS----------------------------------------------
T ss_pred EEEEEEEEECCCCCCCCCEEECCCCEEEEECCCC----------------------------------------------
T ss_conf 7999999825789816852422574687656998----------------------------------------------
Q ss_pred CCEEEEEEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 86089999734526871248733233458899199999367899997399984013666512876788722485389996
Q 002757 512 NETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKV 591 (884)
Q Consensus 512 ~~~l~~~ei~~~~~~~~~~~~~~~~~~i~~~~~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~ 591 (884)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 36668577999999870876568656578876899830333310035533589988788987779999973017974699
Q 002757 592 SYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEK 671 (884)
Q Consensus 592 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 671 (884)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 97346522357554347999714999972621353101112256621102588899999988899999981085425999
Q 002757 672 GIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPE 751 (884)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~ 751 (884)
..+|++||+.|+.+| +.
T Consensus 193 ------------------------------------------------------------~~~l~~~L~~~~~e~-l~-- 209 (404)
T 2ayn_A 193 ------------------------------------------------------------VKYLFTGLKLRLQEE-IT-- 209 (404)
T ss_dssp ------------------------------------------------------------CCBHHHHHHHTTEEC-CC--
T ss_pred ------------------------------------------------------------CCCHHHHHHHHCCCC-EE--
T ss_conf ------------------------------------------------------------542999998754401-03--
Q ss_pred CCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECEEEECC--CCCCCCEEEECCCCCCCCCCCCCCCC-------------
Q ss_conf 941288988852038999930059848999713364043--01343126741467888655323458-------------
Q 002757 752 DMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF--SKNKLETYVDFPVDNLDLSTHVAHLN------------- 816 (884)
Q Consensus 752 d~wyC~~Ck~~~~AtKk~~iw~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~~~~~~------------- 816 (884)
|+|++|++.+.|+|++.|+++|+||+||||||.|+.. .+.|+.+.|.||. .|||++|+....
T Consensus 210 --~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~ 286 (404)
T 2ayn_A 210 --KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPL-MLDMYELCTPELQEKMVSFRSKFKD 286 (404)
T ss_dssp --CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCS-EEECGGGBCHHHHHHTTTTTGGGTC
T ss_pred --ECCHHHCCCCCEEEEEEHHHCCCCEEEEEEEEEEECCCCCEECCCCEECCCC-EEEHHHHCCHHHHHHCCHHHHHHHH
T ss_conf --6252009830155553172199716999998898246683100174464682-5677674485554102013567765
Q ss_pred -----------------------------------CCCCCEEEEEEEEEEEE-CCCCCEEEEEEECCCCCEEEECCCCCE
Q ss_conf -----------------------------------88784488999999310-279974999999289989997599520
Q 002757 817 -----------------------------------DKLSNRYMLYAVSNHYG-SMGGGHYTAFVHHGGGQWYDFDDSHVY 860 (884)
Q Consensus 817 -----------------------------------~~~~~~YdL~AV~nH~G-~l~gGHYtAy~k~~~~~Wy~fnDs~Vs 860 (884)
......|+|+||++|.| ++.+|||+||+|+.+++||+|||+.|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~ 366 (404)
T 2ayn_A 287 LEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVS 366 (404)
T ss_dssp TTC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCC
T ss_pred HHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCE
T ss_conf 53154013331103355555533345555545557688853999999995489999988699998999928996063456
Q ss_pred ECCCCCCCCCC-------EEEEEEEEEC
Q ss_conf 21923246998-------0899989915
Q 002757 861 PISQDKIKTSA-------AYVLFYRRVV 881 (884)
Q Consensus 861 ~v~~~~v~~~~-------AYvLFY~R~~ 881 (884)
++++++|.... ||||||+|++
T Consensus 367 ~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 394 (404)
T 2ayn_A 367 IVTPEDILRLSGGGDWHIAYVLLYGPRR 394 (404)
T ss_dssp CBCHHHHGGGGSSSSSCEEEEEEEECC-
T ss_pred ECCHHHHHHHHCCCCCCEEEEEEEEECC
T ss_conf 6679999763079977628999998347
No 6
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=1.00 E-value=1 Score=533.49 Aligned_cols=316 Identities=30% Similarity=0.583 Sum_probs=268.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--------
Q ss_conf 7776744420389963178999998287479999982231-1127899999906899999999999719999--------
Q 002757 278 AGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYF-REINHDNPLGMDGEIALAFGDLLRKLWAPGA-------- 348 (884)
Q Consensus 278 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~~l~~~~-~~~n~~n~~~~~~~l~~~l~~Ll~~l~~~~~-------- 348 (884)
...+|++||.|+||||||||+||||+|+|+|+++|+...+ ...+..++ ..++.++|..++.++|....
T Consensus 136 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~---~~~l~~~l~~l~~~l~~~~~~~~~~~~~ 212 (476)
T 3mhs_A 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSP---DKCFSCALDKIVHELYGALNTKQASSSS 212 (476)
T ss_dssp GGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCT---TTCHHHHHHHHHHHHHSCCCC-------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCCCCC---CCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 5788997877088467998999998678999999874503554457886---4105899999999996120333345666
Q ss_pred -CCCCHHHHHHHH---HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf -876969999999---6309988989987789999999999998731013788753469999990899999999854057
Q 002757 349 -APVSPRTFKSKL---ARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARN 424 (884)
Q Consensus 349 -~~i~p~~~~~~i---~~~~~~F~g~~QqDa~Efl~~LLd~L~edln~~~~kpy~e~~d~dg~~d~~~a~e~W~~~~~rn 424 (884)
..+.|..++..+ .+..+.|.+++||||||||.+|||.||++++....+. .+.+.......
T Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~----------------~~~~~~~~~~~ 276 (476)
T 3mhs_A 213 TSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNA----------------KEVSRANNKQC 276 (476)
T ss_dssp -CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-----------------------CCCSC
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC----------------CCCCCCCCCCC
T ss_conf 55657500899999988745123888775999999999999999976415665----------------33454455668
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCEE-EEECCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 9842014653999799828999733-310585238750899840037999990899998821389807999989999999
Q 002757 425 DSIIVDLCQGQYKSTLVCPVCKKVS-VTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRAL 503 (884)
Q Consensus 425 ~SiI~dlF~G~l~stl~C~~C~~~S-vtfdpF~~LSLplP~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l 503 (884)
.++|.++|+|+++++++|..|+++| +++|||++|+||||.
T Consensus 277 ~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~--------------------------------------- 317 (476)
T 3mhs_A 277 ECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD--------------------------------------- 317 (476)
T ss_dssp CSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTT---------------------------------------
T ss_pred CCCCEEECCEEEEEEEEECCCCCEECCCCCCHHHHCCCHHH---------------------------------------
T ss_conf 88002113259998899899998517865666661320124---------------------------------------
Q ss_pred HHHHCCCCCCEEEEEEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCC
Q ss_conf 98823798860899997345268712487332334588991999993678999973999840136665128767887224
Q 002757 504 SIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNAL 583 (884)
Q Consensus 504 ~~~~~~~~~~~l~~~ei~~~~~~~~~~~~~~~~~~i~~~~~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (884)
T Consensus 318 -------------------------------------------------------------------------------- 317 (476)
T 3mhs_A 318 -------------------------------------------------------------------------------- 317 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 85389996366685779999998708765686565788768998303333100355335899887889877799999730
Q 002757 584 GIPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAEL 663 (884)
Q Consensus 584 g~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 663 (884)
T Consensus 318 -------------------------------------------------------------------------------- 317 (476)
T 3mhs_A 318 -------------------------------------------------------------------------------- 317 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 17974699973465223575543479997149999726213531011122566211025888999999888999999810
Q 002757 664 QFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFL 743 (884)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~ 743 (884)
..+|++||+.|+
T Consensus 318 --------------------------------------------------------------------~~sl~~~L~~~~ 329 (476)
T 3mhs_A 318 --------------------------------------------------------------------KKKLYECLDSFH 329 (476)
T ss_dssp --------------------------------------------------------------------CCBHHHHHHHHH
T ss_pred --------------------------------------------------------------------HHHHHHHHHHHC
T ss_conf --------------------------------------------------------------------668999999863
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECEEEE-CCCCCCCCEEEECCCCCCCCCCCCCCCCC-----
Q ss_conf 854259999412889888520389999300598489997133640-43013431267414678886553234588-----
Q 002757 744 TEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYS-RFSKNKLETYVDFPVDNLDLSTHVAHLND----- 817 (884)
Q Consensus 744 ~~E~L~~~d~wyC~~Ck~~~~AtKk~~iw~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~~~~~~~----- 817 (884)
++|.+++++ |+|++|++.+.|+|++.|+++|+||+||||||.+. .+...|+++.|.|| +.|||++|+.....
T Consensus 330 ~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP-~~Ldl~~~~~~~~~~~~~~ 407 (476)
T 3mhs_A 330 KKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFP-TYLNMKNYCSTKEKDKHSE 407 (476)
T ss_dssp CCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCC-SEEECGGGBSCCBCCC--C
T ss_pred CHHHCCCCC-CCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCEEECCC-CEEECHHHCCCCCCCCCCC
T ss_conf 842214778-76886688565789987014971139984402154899717898787389-7000343237532343223
Q ss_pred ---CCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCEEEECCCCCEECCCCCCCCCCEEEEEEEEEC
Q ss_conf ---8784488999999310279974999999289989997599520219232469980899989915
Q 002757 818 ---KLSNRYMLYAVSNHYGSMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVV 881 (884)
Q Consensus 818 ---~~~~~YdL~AV~nH~G~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~v~~~~v~~~~AYvLFY~R~~ 881 (884)
.....|+|+||++|.|++++|||+||+|..+++||.|||+.|+++++++|.++.||||||+|++
T Consensus 408 ~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 408 NGKVPDIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp CCBCCCEEEEEEEEEEEEECSSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred CCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCEEECCHHHHCCCCCEEEEEEEEC
T ss_conf 4678997389999999689998875499998898918999498158999899566986799999843
No 7
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=1.00 E-value=1 Score=532.58 Aligned_cols=296 Identities=26% Similarity=0.430 Sum_probs=259.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 76744420389963178999998287479999982231112789999990689999999999971999987696999999
Q 002757 280 CLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKSK 359 (884)
Q Consensus 280 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~~l~~~~~~~n~~n~~~~~~~l~~~l~~Ll~~l~~~~~~~i~p~~~~~~ 359 (884)
.+|++||.|+||||||||+||||+|+|+|+++++..... . ......+..+|+.|+..||.+. .++.|..|+.+
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~----~--~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~ 75 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE----G--DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 75 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT----T--SCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC----C--CCCCCCHHHHHHHHHHHHHHCC-CCCCCHHHHHH
T ss_conf 889987564745449899999997779999999837877----7--7654409999999999886058-87787799864
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 96309988989987789999999999998731013788753469999990899999999854057984201465399979
Q 002757 360 LARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKST 439 (884)
Q Consensus 360 i~~~~~~F~g~~QqDa~Efl~~LLd~L~edln~~~~kpy~e~~d~dg~~d~~~a~e~W~~~~~rn~SiI~dlF~G~l~st 439 (884)
++. +.|.+++||||||||.+|||.||++++. ..+.++|.++|+|+++++
T Consensus 76 ~~~--~~~~~~~QqDA~EFl~~LLd~L~~~~~~-----------------------------~~~~s~i~~~F~g~~~~~ 124 (353)
T 1nb8_A 76 FGW--ETLDSFMQHDVQELCRVLLDNVENKMKG-----------------------------TCVEGTIPKLFRGKMVSY 124 (353)
T ss_dssp HTC--CBTTTTTTSCHHHHHHHHHHHHHHHTTT-----------------------------STTTTHHHHHHCEEEEEE
T ss_pred CCC--CCCCCCCCHHHHHHHHHHHHHHHHHHCC-----------------------------CCCCCHHHHHCEEEEEEE
T ss_conf 188--7778653263999999999999988448-----------------------------875551235030589999
Q ss_pred EECCCCCCEEEEECCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 98289997333105852387508998400379999908999988213898079999899999999882379886089999
Q 002757 440 LVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVAE 519 (884)
Q Consensus 440 l~C~~C~~~SvtfdpF~~LSLplP~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 519 (884)
++|..|++.|.++|||++|+||||..
T Consensus 125 i~C~~C~~~s~~~e~f~~LsL~i~~~------------------------------------------------------ 150 (353)
T 1nb8_A 125 IQCKEVDYRSDRREDYYDIQLSIKGK------------------------------------------------------ 150 (353)
T ss_dssp EEESSSCCEEEEEEEESCEEECCTTC------------------------------------------------------
T ss_pred EEECCCCCEECEEEEEEEEEEEECCC------------------------------------------------------
T ss_conf 99256897002222327998897997------------------------------------------------------
Q ss_pred EECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 73452687124873323345889919999936789999739998401366651287678872248538999636668577
Q 002757 520 IYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGLD 599 (884)
Q Consensus 520 i~~~~~~~~~~~~~~~~~~i~~~~~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~~ 599 (884)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 99999987087656865657887689983033331003553358998878898777999997301797469997346522
Q 002757 600 IRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSKI 679 (884)
Q Consensus 600 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 679 (884)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 35755434799971499997262135310111225662110258889999998889999998108542599994128898
Q 002757 680 VMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPGC 759 (884)
Q Consensus 680 ~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~wyC~~C 759 (884)
.+|.+||+.|+.+|.|+++|.|+|+.|
T Consensus 151 -----------------------------------------------------~~l~~~L~~~~~~E~l~~~~~~~C~~c 177 (353)
T 1nb8_A 151 -----------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEH 177 (353)
T ss_dssp -----------------------------------------------------SBHHHHHHHHTCCEEECTTTCEECGGG
T ss_pred -----------------------------------------------------CCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf -----------------------------------------------------645779998517342478753147767
Q ss_pred CCCCEEEEEEEEEECCCEEEEEEECEEEEC--CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 885203899993005984899971336404--301343126741467888655323458887844889999993102799
Q 002757 760 KKHCQASKKLDLWRLPEILVIHLKRFSYSR--FSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMGG 837 (884)
Q Consensus 760 k~~~~AtKk~~iw~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~YdL~AV~nH~G~l~g 837 (884)
+ ++.|+|++.|+++|+||+||||||.++. +.+.|+++.|.|| +.|||++|+...+...+..|+|+||++|+|++++
T Consensus 178 ~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~ 255 (353)
T 1nb8_A 178 G-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHG 255 (353)
T ss_dssp C-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEESSTTC
T ss_pred C-CEEEEEEEEHHCCCCCEEEEEECEEEECCCCCEEECCCEEECC-CEEEHHHHHCCCCCCCCCEEEEEEEEEEECCCCC
T ss_conf 5-1756898884009972599983679842359507558289779-7665235221337899815999999997478988
Q ss_pred CEEEEEEEC-CCCCEEEECCCCCEECCCCCCC---------------CCCEEEEEEEEECC
Q ss_conf 749999992-8998999759952021923246---------------99808999899158
Q 002757 838 GHYTAFVHH-GGGQWYDFDDSHVYPISQDKIK---------------TSAAYVLFYRRVVE 882 (884)
Q Consensus 838 GHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~---------------~~~AYvLFY~R~~~ 882 (884)
|||+||+|+ .+++||+|||+.|+++++++|. +.+||||||+|++.
T Consensus 256 GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 256 GHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (353)
T ss_dssp CCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTT
T ss_pred CEEEEEEECCCCCCEEEEECCCEEECCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCH
T ss_conf 6799999459999889998960289788999887238976544467688079999998853
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=531.31 Aligned_cols=297 Identities=26% Similarity=0.425 Sum_probs=258.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 77674442038996317899999828747999998223111278999999068999999999997199998769699999
Q 002757 279 GCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPGAAPVSPRTFKS 358 (884)
Q Consensus 279 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~~l~~~~~~~n~~n~~~~~~~l~~~l~~Ll~~l~~~~~~~i~p~~~~~ 358 (884)
..+|++||.|+||||||||+||||+|+|+|+++++..... .......++.+|+.||.+||.+. .++.|..|+.
T Consensus 171 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~------~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~ 243 (522)
T 2f1z_A 171 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE------GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTK 243 (522)
T ss_dssp TTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCC------SSCTTTCHHHHHHHHHHHHHHCS-SCBCCTTHHH
T ss_pred CCCCCCCEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCC------CCCCCCHHHHHHHHHHHHHHCCC-CCCCCHHHHH
T ss_conf 5678544113863188889999986129999999606656------77656528999999999986379-8557678886
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 99630998898998778999999999999873101378875346999999089999999985405798420146539997
Q 002757 359 KLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDSIIVDLCQGQYKS 438 (884)
Q Consensus 359 ~i~~~~~~F~g~~QqDa~Efl~~LLd~L~edln~~~~kpy~e~~d~dg~~d~~~a~e~W~~~~~rn~SiI~dlF~G~l~s 438 (884)
.++. +.|.+++||||||||.+|||.||++++.. ...++|.++|+|++++
T Consensus 244 ~~~~--~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------------------------~~~s~i~~lF~G~~~s 292 (522)
T 2f1z_A 244 SFGW--ETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVS 292 (522)
T ss_dssp HTCC--CTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------------------------TTTTHHHHHHCEEEEE
T ss_pred HCCC--CCCCCCCCCCHHHHHHHHHHHHHHHCCCC-----------------------------CCCCCHHHHEEEEEEE
T ss_conf 4187--65787626469999999999998641588-----------------------------6566021313379999
Q ss_pred EEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 99828999733310585238750899840037999990899998821389807999989999999988237988608999
Q 002757 439 TLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALSIACALGVNETLLVA 518 (884)
Q Consensus 439 tl~C~~C~~~SvtfdpF~~LSLplP~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 518 (884)
+++|..|++.|.++|||++|+||||..
T Consensus 293 ~i~C~~C~~~s~~~e~f~~LsL~i~~~----------------------------------------------------- 319 (522)
T 2f1z_A 293 YIQCKEVDYRSDRREDYYDIQLSIKGK----------------------------------------------------- 319 (522)
T ss_dssp EECCSSSCCCCCEEEEESCEEECCTTC-----------------------------------------------------
T ss_pred EEECCCCCCEEEEEEEEEEEEEEECCC-----------------------------------------------------
T ss_conf 887278995553663207898884786-----------------------------------------------------
Q ss_pred EEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 97345268712487332334588991999993678999973999840136665128767887224853899963666857
Q 002757 519 EIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALGIPLVAKVSYLAHGL 598 (884)
Q Consensus 519 ei~~~~~~~~~~~~~~~~~~i~~~~~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~~ 598 (884)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 79999998708765686565788768998303333100355335899887889877799999730179746999734652
Q 002757 599 DIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQFYLTDEKGIVKNSK 678 (884)
Q Consensus 599 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 678 (884)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 23575543479997149999726213531011122566211025888999999888999999810854259999412889
Q 002757 679 IVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLTEEPLGPEDMWYCPG 758 (884)
Q Consensus 679 ~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~wyC~~ 758 (884)
.+|.+||+.|+.+|.|+++|.|+|+.
T Consensus 320 ------------------------------------------------------~~l~~~L~~~~~~E~l~~~n~~~C~~ 345 (522)
T 2f1z_A 320 ------------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGE 345 (522)
T ss_dssp ------------------------------------------------------CBHHHHHHHHTCEEEECTTSCBCCGG
T ss_pred ------------------------------------------------------CCCHHHHHHHHCEEECCCCCEEECCC
T ss_conf ------------------------------------------------------44067998740502227762040476
Q ss_pred CCCCCEEEEEEEEEECCCEEEEEEECEEEEC--CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 8885203899993005984899971336404--30134312674146788865532345888784488999999310279
Q 002757 759 CKKHCQASKKLDLWRLPEILVIHLKRFSYSR--FSKNKLETYVDFPVDNLDLSTHVAHLNDKLSNRYMLYAVSNHYGSMG 836 (884)
Q Consensus 759 Ck~~~~AtKk~~iw~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPi~~LDls~~~~~~~~~~~~~YdL~AV~nH~G~l~ 836 (884)
|+ ++.|+|++.|+++|+||+||||||.|+. ..+.|+++.|+|| +.|||++|+...+...+..|+|+||++|+|++.
T Consensus 346 c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~ 423 (522)
T 2f1z_A 346 HG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNH 423 (522)
T ss_dssp GC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEECSSS
T ss_pred CC-CCCEEEEEEEECCCCEEEEEEEEEEECCCCCCCEECCCEEECC-CEECCHHHHCCCCCCCCCEEEEEEEEEECCCCC
T ss_conf 77-6536799993419963899987478816678526768279678-813443540544689983799999999645699
Q ss_pred CCEEEEEEEC-CCCCEEEECCCCCEECCCCCCCC---------------CCEEEEEEEEECC
Q ss_conf 9749999992-89989997599520219232469---------------9808999899158
Q 002757 837 GGHYTAFVHH-GGGQWYDFDDSHVYPISQDKIKT---------------SAAYVLFYRRVVE 882 (884)
Q Consensus 837 gGHYtAy~k~-~~~~Wy~fnDs~Vs~v~~~~v~~---------------~~AYvLFY~R~~~ 882 (884)
+|||+||+|+ .+++||+|||+.|+++++++|.. .+||||||+|++.
T Consensus 424 ~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 424 GGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 485 (522)
T ss_dssp CSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTS
T ss_pred CCEEEEEEECCCCCCEEEEECCEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 86689999438999899997832489989999886338875433457689349999998882
No 9
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=531.09 Aligned_cols=330 Identities=24% Similarity=0.417 Sum_probs=264.1
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---------
Q ss_conf 87776744420389963178999998287479999982231112789999990689999999999971999---------
Q 002757 277 EAGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLGMDGEIALAFGDLLRKLWAPG--------- 347 (884)
Q Consensus 277 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~~l~~~~~~~n~~n~~~~~~~l~~~l~~Ll~~l~~~~--------- 347 (884)
+...+|++||.|+||||||||+||||+|+|+|+++|+...... ...++.....++..+|+.|+..||++.
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~-~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~ 416 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKI-FQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESG 416 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHH-HHHCCSCGGGCHHHHHHHHHHHHHSCC---------
T ss_pred CCCCCCCCCEEECCCCEEHHHHHHHHHCCHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 4567886551766776203379999857299999998543443-025667854118899999999874566454442112
Q ss_pred -----------CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -----------987696999999963099889899877899999999999987310137887534699999908999999
Q 002757 348 -----------AAPVSPRTFKSKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEY 416 (884)
Q Consensus 348 -----------~~~i~p~~~~~~i~~~~~~F~g~~QqDa~Efl~~LLd~L~edln~~~~kpy~e~~d~dg~~d~~~a~e~ 416 (884)
...++|..|+.++++..+.|.+++||||||||.+|||.||++++.
T Consensus 417 ~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~------------------------ 472 (854)
T 3ihp_A 417 DGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS------------------------ 472 (854)
T ss_dssp ------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT------------------------
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC------------------------
T ss_conf 22233333467775481999999864033112144337899999999999987365------------------------
Q ss_pred HHHHHCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCH
Q ss_conf 99854057984201465399979982899973331058523875089984003799999089999882138980799998
Q 002757 417 WQNHLARNDSIIVDLCQGQYKSTLVCPVCKKVSVTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKF 496 (884)
Q Consensus 417 W~~~~~rn~SiI~dlF~G~l~stl~C~~C~~~SvtfdpF~~LSLplP~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~ 496 (884)
.++|.++|+|+++++++|..|++++++++||++|+||||.... ...
T Consensus 473 --------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~--------------------------~~~ 518 (854)
T 3ihp_A 473 --------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAA--------------------------LNK 518 (854)
T ss_dssp --------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGC--------------------------TTH
T ss_pred --------CCCCHHHCCCEEEEEEEECCCCCEEEEEEECEEEEEECCCCCC--------------------------CCC
T ss_conf --------6882221073588999964899776776306478845786323--------------------------442
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCC
Q ss_conf 99999999882379886089999734526871248733233458899199999367899997399984013666512876
Q 002757 497 EDLIRALSIACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKL 576 (884)
Q Consensus 497 ~~l~~~l~~~~~~~~~~~l~~~ei~~~~~~~~~~~~~~~~~~i~~~~~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (884)
.++..
T Consensus 519 ~~~~~--------------------------------------------------------------------------- 523 (854)
T 3ihp_A 519 EELLE--------------------------------------------------------------------------- 523 (854)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred CCHHH---------------------------------------------------------------------------
T ss_conf 10001---------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78872248538999636668577999999870876568656578876899830333310035533589988788987779
Q 002757 577 TSCPNALGIPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVE 656 (884)
Q Consensus 577 ~~~~~~~g~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 656 (884)
|..-.. . ... .+
T Consensus 524 ------------------------~~~~~~--------~----------------~~~---------~g----------- 535 (854)
T 3ihp_A 524 ------------------------YEEKKR--------Q----------------AEE---------EK----------- 535 (854)
T ss_dssp ------------------------HHHHHH--------H----------------HHH---------TT-----------
T ss_pred ------------------------HCCCCC--------C----------------CCC---------CC-----------
T ss_conf ------------------------001111--------0----------------002---------35-----------
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99997301797469997346522357554347999714999972621353101112256621102588899999988899
Q 002757 657 PPSDAELQFYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLY 736 (884)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~ 736 (884)
. ..++ .....++|+
T Consensus 536 ---------------------------~------------------------------~~~~---------~~~~~~sL~ 549 (854)
T 3ihp_A 536 ---------------------------M------------------------------ALPE---------LVRAQVPFS 549 (854)
T ss_dssp ---------------------------C------------------------------CCCC---------CCCEECCHH
T ss_pred ---------------------------C------------------------------CCCC---------CCCCCCCHH
T ss_conf ---------------------------5------------------------------4432---------456777799
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECEEEE-CCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 9999810854259999412889888520389999300598489997133640-430134312674146788865532345
Q 002757 737 KCLEAFLTEEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYS-RFSKNKLETYVDFPVDNLDLSTHVAHL 815 (884)
Q Consensus 737 dCL~~f~~~E~L~~~d~wyC~~Ck~~~~AtKk~~iw~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPi~~LDls~~~~~~ 815 (884)
+||+.|+.+|.|++ |+|++|++++.|+|++.|+++|+||+||||||.++ .+...|+++.|.|| +.|||++|+...
T Consensus 550 dcL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP-~~LDl~~y~~~~ 625 (854)
T 3ihp_A 550 SCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMP-EELDISQLRGTG 625 (854)
T ss_dssp HHHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCC-SEEECGGGBCCC
T ss_pred HHHHHHCCCEEEEE---EECCCCCCCCEEEEEEEEEECCCEEEEEEEHHEECCCCCEEECCEEEECC-CCEEHHHHCCCC
T ss_conf 99998558407533---10355687300538888212896679994531356777327788698568-807068850678
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 8-------------------------------------------------------------------------------
Q 002757 816 N------------------------------------------------------------------------------- 816 (884)
Q Consensus 816 ~------------------------------------------------------------------------------- 816 (884)
.
T Consensus 626 ~q~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~ 705 (854)
T 3ihp_A 626 LQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPG 705 (854)
T ss_dssp SCTTCCBCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC-
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 89872121335665556554456676889999998648977888888863179856777677764167633246555666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 002757 817 -------------------------------------------------------------------------------- 816 (884)
Q Consensus 817 -------------------------------------------------------------------------------- 816 (884)
T Consensus 706 ~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (854)
T 3ihp_A 706 SSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVP 785 (854)
T ss_dssp -------------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC----------------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66666655556889989999999828878899999986057387777764068443343210012222334565434455
Q ss_pred -----CCCCCEEEEEEEEEEEE-CCCCCEEEEEEECCCCCEEEECCCCCEECCCCCCCCCCEEEEEEEEEC
Q ss_conf -----88784488999999310-279974999999289989997599520219232469980899989915
Q 002757 817 -----DKLSNRYMLYAVSNHYG-SMGGGHYTAFVHHGGGQWYDFDDSHVYPISQDKIKTSAAYVLFYRRVV 881 (884)
Q Consensus 817 -----~~~~~~YdL~AV~nH~G-~l~gGHYtAy~k~~~~~Wy~fnDs~Vs~v~~~~v~~~~AYvLFY~R~~ 881 (884)
...+..|+|+||++|.| ++.+||||||+|.. ++||+|||+.|+++ ++.....||||||+|++
T Consensus 786 ~~~~~~~~~~~Y~L~avi~H~G~~~~~GHY~~~~~~~-~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 786 VGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKE-GRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp --CCCCCCCSEEEEEEEEEEESSCSSCCEEEEEEEET-TEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred CCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEC-CEEEEEECCEEEEC--CCCCCCCCEEEEEEECC
T ss_conf 5578888984599999999644899972829999759-98999977715871--46677851699999568
No 10
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=1.00 E-value=1 Score=511.80 Aligned_cols=297 Identities=25% Similarity=0.350 Sum_probs=257.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC----CCHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 77767444203899631789999982874799999822311127899999----90689999999999971999987696
Q 002757 278 AGCLGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGDYFREINHDNPLG----MDGEIALAFGDLLRKLWAPGAAPVSP 353 (884)
Q Consensus 278 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~l~~~~l~~~~~~~n~~n~~~----~~~~l~~~l~~Ll~~l~~~~~~~i~p 353 (884)
....+++||.|+||||||||+||||+|+|+|+++|+..... .+..++.+ ...+++.+|+.|+..||.+...+++|
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p 97 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPS-QGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP 97 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGG-GCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 35789888773885139999999997479999999712654-46677643344411389999999999986079984377
Q ss_pred HHHHHHHHHHCCCCC-------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999963099889-------8998778999999999999873101378875346999999089999999985405798
Q 002757 354 RTFKSKLARFAPQFS-------GFNQHDSQELLAFLLDGLHEDLNRVKCKPYAEAKDGDGRSDEDIADEYWQNHLARNDS 426 (884)
Q Consensus 354 ~~~~~~i~~~~~~F~-------g~~QqDa~Efl~~LLd~L~edln~~~~kpy~e~~d~dg~~d~~~a~e~W~~~~~rn~S 426 (884)
..|+.+++...+.|. +++||||||||.+|||.||++++. +
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------------------------~ 144 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------------------------K 144 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------------------------H
T ss_pred HHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC---------------------------------C
T ss_conf 9999999875850210466777766668999999999999987343---------------------------------4
Q ss_pred CCCCCCCEEEEEEEECCCCCCEE--EEECCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 42014653999799828999733--3105852387508998400379999908999988213898079999899999999
Q 002757 427 IIVDLCQGQYKSTLVCPVCKKVS--VTFDPFMYLSLPLPSTTVRMMTLTVVNTDGTAKPSPFTITVPKYGKFEDLIRALS 504 (884)
Q Consensus 427 iI~dlF~G~l~stl~C~~C~~~S--vtfdpF~~LSLplP~~~~~~~~v~~~~~d~~~~p~~~~v~~~k~~~~~~l~~~l~ 504 (884)
+|.++|+ +++++++|..|++.+ .++|||++|+||||..
T Consensus 145 ~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~--------------------------------------- 184 (415)
T 1vjv_A 145 FSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGT--------------------------------------- 184 (415)
T ss_dssp HHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTT---------------------------------------
T ss_pred HHHHHHH-HHEEEEEECCCCCCCCCCCCCCCEEEEECCCCC---------------------------------------
T ss_conf 6999998-611799977999874631354543665125666---------------------------------------
Q ss_pred HHHCCCCCCEEEEEEEECCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCCC
Q ss_conf 88237988608999973452687124873323345889919999936789999739998401366651287678872248
Q 002757 505 IACALGVNETLLVAEIYNHQIIRYLEEPADSISLIRDDDQLVAYRLRKENDKDPLVVFMHQQLEEQYIHGKLTSCPNALG 584 (884)
Q Consensus 505 ~~~~~~~~~~l~~~ei~~~~~~~~~~~~~~~~~~i~~~~~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 584 (884)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 53899963666857799999987087656865657887689983033331003553358998878898777999997301
Q 002757 585 IPLVAKVSYLAHGLDIRNLYLELLKPFCIPAKDTFNNNVTAGSTAIEEVTRIVDNVPVTGGVATPSSVKEVEPPSDAELQ 664 (884)
Q Consensus 585 ~P~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 664 (884)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 79746999734652235755434799971499997262135310111225662110258889999998889999998108
Q 002757 665 FYLTDEKGIVKNSKIVMNEPIAMTGVPEEVHVLVCWSGKLIEQYDTRLLSSFPEIFKSGFLPKRPQESVSLYKCLEAFLT 744 (884)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~ 744 (884)
..+|.+||+.|+.
T Consensus 185 -------------------------------------------------------------------~~~l~~~L~~~~~ 197 (415)
T 1vjv_A 185 -------------------------------------------------------------------TNFMRNGLLEGLN 197 (415)
T ss_dssp -------------------------------------------------------------------CCBHHHHHHHHHE
T ss_pred -------------------------------------------------------------------CCHHHHHHHHHHH
T ss_conf -------------------------------------------------------------------1238999998744
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECEEEECC--CCCCCCEEEECCCCCCCCCCCCCCC-------
Q ss_conf 5425999941288988852038999930059848999713364043--0134312674146788865532345-------
Q 002757 745 EEPLGPEDMWYCPGCKKHCQASKKLDLWRLPEILVIHLKRFSYSRF--SKNKLETYVDFPVDNLDLSTHVAHL------- 815 (884)
Q Consensus 745 ~E~L~~~d~wyC~~Ck~~~~AtKk~~iw~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPi~~LDls~~~~~~------- 815 (884)
+| +. |+|+.|+..+.|+|+..|+++|+||+||||||.|+.. .+.|+++.|.||. .|||++|+...
T Consensus 198 e~-i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~-~Ldl~~~~~~~~~~~~~~ 271 (415)
T 1vjv_A 198 EK-IE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPF-QLDVADMLTPEYAAEKVK 271 (415)
T ss_dssp EC--------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCS-EEECGGGBCHHHHHHHHH
T ss_pred HH-HH----HCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEECCCCCCHHHCCCCCCCC-EEEHHHHCCHHHHHHHHH
T ss_conf 55-53----1461217864278887702699715999988998378884043167647995-767678428333222121
Q ss_pred -------------------------------------------------------------------CCCCCCEEEEEEE
Q ss_conf -------------------------------------------------------------------8887844889999
Q 002757 816 -------------------------------------------------------------------NDKLSNRYMLYAV 828 (884)
Q Consensus 816 -------------------------------------------------------------------~~~~~~~YdL~AV 828 (884)
.......|+|+||
T Consensus 272 ~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aV 351 (415)
T 1vjv_A 272 VRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGV 351 (415)
T ss_dssp HHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 57999987533334566553102255544443453102220125677655443332053334323235678843889999
Q ss_pred EEEEE-CCCCCEEEEEEEC--CCCCEEEECCCCCEECCCCCCCCCC-------EEEEEEEEEC
Q ss_conf 99310-2799749999992--8998999759952021923246998-------0899989915
Q 002757 829 SNHYG-SMGGGHYTAFVHH--GGGQWYDFDDSHVYPISQDKIKTSA-------AYVLFYRRVV 881 (884)
Q Consensus 829 ~nH~G-~l~gGHYtAy~k~--~~~~Wy~fnDs~Vs~v~~~~v~~~~-------AYvLFY~R~~ 881 (884)
++|.| ++.+|||+||+|+ .+++||+|||+.|+++++++|.... ||||||+|++
T Consensus 352 v~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 352 ITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp EEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred EEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCEECCHHHHHHHCCCCCCCEEEEEEEEECC
T ss_conf 993589999988799994788899489967885767279997642079876607999999547
Done!