BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002758
(884 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8EU05|CLPB_OCEIH Chaperone protein ClpB OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=clpB PE=3
SV=1
Length = 809
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 110/224 (49%), Gaps = 40/224 (17%)
Query: 474 RALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIAL 532
+ L +++ Q EA++ +++ I + R G +D P+R I F F GP GK ++A AL
Sbjct: 507 KILHDRVIGQSEAVNAVAKAIRRARAGLKD-----PKRPIGSFIFLGPTGVGKTELARAL 561
Query: 533 AEIIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL 586
AE+++ ++ I D+ + +PP + VG D G L + V
Sbjct: 562 AEVMFADEDAMIRIDMSEYMERHATSRLVGSPPGY----VGYDE----GGQLTEKVR--- 610
Query: 587 LKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARI 646
+KP SVV L+ V+KA V N L + ++ G+L DS GR V N + + S+ +
Sbjct: 611 -RKPYSVVLLDEVEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTVIIMTSN------V 663
Query: 647 LPSEMKDCKF------SEEKIYR-AKSRLTQIL---IEPALVNR 680
SE+K K+ +EEK Y+ KS++ + L P +NR
Sbjct: 664 GASELKRNKYVGFALDNEEKDYKDMKSKVIEELKKAFRPEFLNR 707
>sp|Q826F2|CLPB2_STRAW Chaperone protein ClpB 2 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=clpB2 PE=3 SV=1
Length = 879
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L E++ QDEA+ +++ I + R+G D PRR I F F GP GK ++A LA
Sbjct: 574 LRERVIGQDEAVKLVTDAIIRARSGIRD-----PRRPIGSFIFLGPTGVGKTELAKTLAR 628
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++ +EN + D+ M PP + GG + + +
Sbjct: 629 TLFDSEENMVRLDMSEYQERHTVSRLMGAPPGYVGYEEGGQLTEA------------VRR 676
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
KP SVV + ++KA V N+L + + G++ D+ GR V N + + S+
Sbjct: 677 KPYSVVLFDEIEKAHTDVFNTLLQILDDGRITDAQGRTVDFRNTVIIMTSNI 728
>sp|Q53LY0|CLPC3_ORYSJ Chaperone protein ClpC3, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC3 PE=2 SV=1
Length = 932
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 24/171 (14%)
Query: 475 ALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALA 533
+L +I QDEA++ IS+ I + R G D PRR I F F GP GK ++A ALA
Sbjct: 613 SLHRRIVGQDEAVTAISRAIRRARVGLRD-----PRRPIASFIFAGPTGVGKSELAKALA 667
Query: 534 EIIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL 587
YG E + D+ + + +PP + GG + +
Sbjct: 668 AYYYGSPEAMVRLDMSEFMEKHTVAKLVGSPPGYVGYAEGGQ------------LTEAIR 715
Query: 588 KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTAS 638
++P +VV + V+KA V N + + + G+L DS GR V N++ + S
Sbjct: 716 RRPYAVVLFDEVEKAHPDVFNMMLQILDDGRLTDSKGRTVDFKNSLIIMTS 766
>sp|Q2QVG9|CLPC2_ORYSJ Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC2 PE=2 SV=2
Length = 919
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 32/236 (13%)
Query: 425 DLTERSQELSGCCSATVNGSISNQLAQSSSSSCPDL----NCQFDLSNWK---------- 470
+L +R EL +A ++ S A++ S L + Q +S+W
Sbjct: 530 ELRDREMELKAQITALIDKSKEMSKAETESGETGPLVNEADIQHIVSSWTGIPVEKVSSD 589
Query: 471 ------TLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLC 523
+ L +++ QDEA+ IS++I + R G ++ P R I F F GP
Sbjct: 590 ESDKLLKMEETLHQRVIGQDEAVKAISRSIRRARVGLKN-----PNRPIASFIFAGPTGV 644
Query: 524 GKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVA 583
GK ++A ALA +G +E I D+ + E + K G + G T +
Sbjct: 645 GKSELAKALAAYYFGSEEAMIRLDMS-EFMERHTVSKLI-----GSPPGYVGYTEGGQLT 698
Query: 584 WELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASS 639
+ ++P +VV + ++KA V N + + ++ G+L DS GR V N + + S+
Sbjct: 699 EAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 754
>sp|Q7F9I1|CLPC1_ORYSJ Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC1 PE=2 SV=2
Length = 918
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 32/236 (13%)
Query: 425 DLTERSQELSGCCSATVNGSISNQLAQSSSSSCPDLNCQFDL----SNWK---------- 470
+L +R EL +A ++ S A++ S L + D+ S+W
Sbjct: 529 ELRDREMELKAQITAIIDKSKEMVKAETESGEVGPLVTEADIQHIVSSWTGIPVEKVSSD 588
Query: 471 ------TLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLC 523
+ L +I QDEA+ IS+ I + R G ++ P R I F F+GP
Sbjct: 589 ESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKN-----PNRPIASFIFSGPTGV 643
Query: 524 GKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVA 583
GK ++A ALA +G +E I D+ + E + K G + G T +
Sbjct: 644 GKSELAKALAAYYFGSEEAMIRLDMS-EFMERHTVSKLI-----GSPPGYVGYTEGGQLT 697
Query: 584 WELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASS 639
+ ++P +VV + ++KA V N + + ++ G+L DS GR V N + + S+
Sbjct: 698 EAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 753
>sp|P0A522|CLPC_MYCTU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1
Length = 848
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 12/166 (7%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L ++I Q++A+ +S+ I + R G +D P+R F F GP GK +++ ALA
Sbjct: 514 LHKRIIGQEDAVKAVSKAIRRTRAGLKD-----PKRPSGSFIFAGPSGVGKTELSKALAN 568
Query: 535 IIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVV 594
++G + I D+ GE ++ +F + G + G + ++ +KP SVV
Sbjct: 569 FLFGDDDALIQIDM----GEFHD--RFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVV 622
Query: 595 YLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
+ ++KA + NSL + ++ G+L D GR V N + + S+
Sbjct: 623 LFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNL 668
>sp|P0A523|CLPC_MYCBO Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=clpC PE=3 SV=1
Length = 848
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 12/166 (7%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L ++I Q++A+ +S+ I + R G +D P+R F F GP GK +++ ALA
Sbjct: 514 LHKRIIGQEDAVKAVSKAIRRTRAGLKD-----PKRPSGSFIFAGPSGVGKTELSKALAN 568
Query: 535 IIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVV 594
++G + I D+ GE ++ +F + G + G + ++ +KP SVV
Sbjct: 569 FLFGDDDALIQIDM----GEFHD--RFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVV 622
Query: 595 YLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
+ ++KA + NSL + ++ G+L D GR V N + + S+
Sbjct: 623 LFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNL 668
>sp|Q72AW6|CLPB_DESVH Chaperone protein ClpB OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3
SV=1
Length = 865
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 24/172 (13%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L E++ Q+EA+ +S+ + + R G D P R I F F GP GK ++ LAE
Sbjct: 571 LHERVVGQEEAVDAVSEAVLRARAGLSD-----PSRPIGSFIFLGPTGVGKTELCKTLAE 625
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++ +EN + D+ + + PP + VG D G L + V +
Sbjct: 626 ALFDTEENIVRLDMSEYMEKHAVARLIGAPPGY----VGYDE----GGQLTEAVR----R 673
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
KP SVV + V+KA V N+L + + G+L DS+GR V N I + S+
Sbjct: 674 KPYSVVLFDEVEKAHPDVFNTLLQILDDGRLTDSHGRTVDFRNTIIIMTSNI 725
>sp|P24428|CLPC_MYCLE Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium leprae (strain TN) GN=clpC PE=3 SV=2
Length = 848
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 12/166 (7%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L ++I Q++A+ +S+ I + R G +D P+R F F GP GK +++ ALA
Sbjct: 514 LHKRIIGQEDAVKAVSKAIRRTRAGLKD-----PKRPSGSFIFAGPSGVGKTELSKALAN 568
Query: 535 IIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVV 594
++G + I D+ GE ++ +F + G + G + ++ +KP SVV
Sbjct: 569 FLFGDDDALIQIDM----GEFHD--RFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVV 622
Query: 595 YLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
+ ++KA + NSL + ++ G+L D GR V N + + S+
Sbjct: 623 LFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNL 668
>sp|Q9PKA8|CLPC_CHLMU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia muridarum (strain MoPn / Nigg) GN=clpC PE=3
SV=1
Length = 870
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 24/175 (13%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L +K+ QD+A++ I + I + RTG +D P R + F F GP GK +A +A
Sbjct: 549 LQKKVIGQDQAVASICRAIRRSRTGIKD-----PNRPMGSFLFLGPTGVGKTLLAQQIAV 603
Query: 535 IIYGGKENFICADLC------PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++GG+++ I D+ M +PP + GG ++ ++ +
Sbjct: 604 EMFGGEDSLIQVDMSEYMEKFAATKMMGSPPGYVGHEEGG------------HLTEQVRR 651
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643
+P VV + ++KA + + + + ++ G+L DS+GR++ N I + S+ D
Sbjct: 652 RPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGRKIDFRNTIIIMTSNLGAD 706
>sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1
Length = 922
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 29/218 (13%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L ++I QDEA+ IS+ I + R G ++ P R I F F+GP GK ++A ALA
Sbjct: 604 LHKRIIGQDEAVQAISRAIRRARVGLKN-----PNRPIASFIFSGPTGVGKSELAKALAA 658
Query: 535 IIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVV 594
+G +E I D+ + E + K G + G T + + ++P +VV
Sbjct: 659 YYFGSEEAMIRLDMS-EFMERHTVSKLI-----GSPPGYVGYTEGGQLTEAVRRRPYTVV 712
Query: 595 YLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFV----TASSFVEDA--RI-- 646
+ ++KA V N + + ++ G+L DS GR V N + + SS +E RI
Sbjct: 713 LFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGF 772
Query: 647 -LPSEMKDCKFSEEKIYRAKSRLTQIL---IEPALVNR 680
L + KD ++ R KS +T+ L P +NR
Sbjct: 773 DLDYDEKDSSYN-----RIKSLVTEELKQYFRPEFLNR 805
>sp|Q9FI56|CLPC1_ARATH Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana
GN=CLPC1 PE=1 SV=1
Length = 929
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 29/218 (13%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L ++I QDEA+ IS+ I + R G ++ P R I F F+GP GK ++A ALA
Sbjct: 606 LHKRIIGQDEAVKAISRAIRRARVGLKN-----PNRPIASFIFSGPTGVGKSELAKALAA 660
Query: 535 IIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVV 594
+G +E I D+ + E + K G + G T + + ++P +VV
Sbjct: 661 YYFGSEEAMIRLDMS-EFMERHTVSKLI-----GSPPGYVGYTEGGQLTEAVRRRPYTVV 714
Query: 595 YLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFV----TASSFVEDA--RI-- 646
+ ++KA V N + + ++ G+L DS GR V N + + SS +E RI
Sbjct: 715 LFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGF 774
Query: 647 -LPSEMKDCKFSEEKIYRAKSRLTQIL---IEPALVNR 680
L + KD ++ R KS +T+ L P +NR
Sbjct: 775 DLDYDEKDSSYN-----RIKSLVTEELKQYFRPEFLNR 807
>sp|Q81GM5|CLPB_BACCR Chaperone protein ClpB OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=clpB PE=3 SV=1
Length = 866
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 25/195 (12%)
Query: 472 LFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAI 530
L + L+E++ Q+EA+S++S + + R G +D P R I F F GP GK ++A
Sbjct: 568 LEQILSERVIGQEEAVSLVSDAVLRARAGIKD-----PNRPIGSFIFLGPTGVGKTELAK 622
Query: 531 ALAEIIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAW 584
LA+ ++ +E I D+ + + PP + VG + G L + V
Sbjct: 623 TLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPPGY----VGYEE----GGQLTEAVR- 673
Query: 585 ELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 644
+KP SVV L+ ++KA V N L + + G++ DS GR V N + + S+ + A
Sbjct: 674 ---RKPYSVVLLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSN-IGSA 729
Query: 645 RILPSEMKDCKFSEE 659
+L +D EE
Sbjct: 730 HLLDGLEEDGSIKEE 744
>sp|Q8KG79|CLPB1_CHLTE Probable chaperone protein ClpB 1 OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=clpB1 PE=3 SV=1
Length = 438
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 31/217 (14%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L ++ QDEA+ +S + + R G D +R I F F GP GK ++A LAE
Sbjct: 139 LHRRVVGQDEAVRAVSDAVKRSRAGMGDE-----KRPIGSFIFLGPTGVGKTELARTLAE 193
Query: 535 IIYGGKENFICADLCPQ------DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++ ++ I D+ + PP + GG L + V +
Sbjct: 194 YLFDDEDALIRIDMSEYMEAHTVSRLVGAPPGYVGYEEGGQ--------LTEAVR----R 241
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 648
KP SVV L+ ++KA V N L + + G+L DS GR V+ N I + S+ A+++
Sbjct: 242 KPFSVVLLDEIEKAHPDVFNILLQILDDGRLTDSKGRTVNFKNTIIIMTSNI--GAQLIQ 299
Query: 649 SEMK--DCKFSEEKIYRAKSRLTQIL---IEPALVNR 680
SEM+ + + ++ + K +L Q+L + P +NR
Sbjct: 300 SEMEHLEGRDADAALAGLKEKLFQLLKQQVRPEFLNR 336
>sp|Q82SD8|CLPB_NITEU Chaperone protein ClpB OS=Nitrosomonas europaea (strain ATCC 19718
/ NBRC 14298) GN=clpB PE=3 SV=1
Length = 863
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L E++ QDEA+ ++S I + R+G D P R F F GP GK ++ ALA
Sbjct: 571 LHERVIGQDEAVRLVSDAIRRSRSGLAD-----PNRPYGSFLFLGPTGVGKTELCKALAG 625
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++ +E+ I D+ + + PP + GG Y+ ++ +
Sbjct: 626 FLFDSEEHLIRVDMSEFMEKHSVARLIGAPPGYVGYEEGG------------YLTEQVRR 673
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
KP SV+ L+ V+KA V N L + + G++ D GR V N + V S+
Sbjct: 674 KPYSVILLDEVEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNL 725
>sp|Q4L3I4|CLPC_STAHJ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC
PE=3 SV=1
Length = 824
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 30/193 (15%)
Query: 472 LFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAI 530
L + L +++ Q++A++ IS+ + + R G +D P+R I F F GP GK ++A
Sbjct: 502 LEQTLHDRVIGQNDAVTSISKAVRRARAGLKD-----PKRPIGSFIFLGPTGVGKTELAR 556
Query: 531 ALAEIIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAW 584
ALAE ++G ++ I D+ + + PP + VG D G L + V
Sbjct: 557 ALAESMFGEEDAMIRVDMSEFMEKHAVSRLVGAPPGY----VGHDE----GGQLTEKVR- 607
Query: 585 ELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 644
+KP SV+ + ++KA V N L + + G L D+ GR+V N + + S+
Sbjct: 608 ---RKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRQVDFRNTVIIMTSN----- 659
Query: 645 RILPSEMKDCKFS 657
+ E++D +F+
Sbjct: 660 -VGAQELQDQRFA 671
>sp|O84288|CLPC_CHLTR Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=clpC PE=3
SV=1
Length = 854
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 471 TLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIA 529
TL L +K+ Q +A++ I + I + RTG +D P R + F F GP GK +A
Sbjct: 527 TLETTLQKKVIGQSQAVASICRAIRRSRTGIKD-----PNRPMGSFLFLGPTGVGKTLLA 581
Query: 530 IALAEIIYGGKENFICADLC------PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVA 583
+A ++GG+++ I D+ M +PP + GG ++
Sbjct: 582 QQIAIEMFGGEDSLIQVDMSEYMEKFAATKMMGSPPGYVGHEEGG------------HLT 629
Query: 584 WELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643
++ ++P VV + ++KA + + + + ++ G+L DS+GR++ N I + S+ D
Sbjct: 630 EQVRRRPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGRKIDFRNTIIIMTSNLGAD 689
>sp|Q7NFE9|CLPB_GLOVI Chaperone protein ClpB OS=Gloeobacter violaceus (strain PCC 7421)
GN=clpB PE=3 SV=1
Length = 872
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 31/214 (14%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L +++ Q+EA+ ++S+ I + R G D P R I F F GP GK ++A ALA
Sbjct: 573 LHKRVVGQEEAVRIVSEAIQRSRAGLAD-----PNRPIASFIFLGPTGVGKTELAKALAS 627
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++ + + D+ + + PP + VG D G L + V +
Sbjct: 628 FLFDDENAMVRIDMSEYMEKHSVSRLIGAPPGY----VGYDE----GGQLTEAVR----R 675
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 648
+P +VV + ++KA V N L + + G++ DS GR + NA+ + S+ DA IL
Sbjct: 676 RPYAVVLFDEIEKAHNDVFNVLLQVLDDGRITDSQGRTIDFKNAVIIMTSNIGSDA-ILR 734
Query: 649 SEMKDCKFSE--EKIYRAKSRLTQILIEPALVNR 680
D + + E++ RA Q+ P +NR
Sbjct: 735 LGGNDAYYEQMREEVMRA----MQVHFRPEFLNR 764
>sp|Q81TT4|CLPB_BACAN Chaperone protein ClpB OS=Bacillus anthracis GN=clpB PE=3 SV=1
Length = 866
Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 25/195 (12%)
Query: 472 LFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAI 530
L + L+E++ Q+EA+S++S + + R G +D P R I F F GP GK ++A
Sbjct: 568 LEQILSERVIGQEEAVSLVSDAVLRARAGIKD-----PNRPIGSFIFLGPTGVGKTELAK 622
Query: 531 ALAEIIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAW 584
LA+ ++ +E I D+ + + PP + VG + G L + V
Sbjct: 623 TLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPPGY----VGYEE----GGQLTEAVR- 673
Query: 585 ELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 644
+KP SV+ L+ ++KA V N L + + G++ DS GR V N + + S+ + A
Sbjct: 674 ---RKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSN-IGSA 729
Query: 645 RILPSEMKDCKFSEE 659
+L +D EE
Sbjct: 730 HLLDGLEEDGSIKEE 744
>sp|P31542|CLPAB_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,
chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1
Length = 923
Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 32/236 (13%)
Query: 425 DLTERSQELSGCCSATVNGSISNQLAQSSSSSCPDLNCQFDL----SNWK---------- 470
+L +R +L +A ++ + A+S ++ L + D+ S+W
Sbjct: 533 ELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTD 592
Query: 471 ------TLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLC 523
+ L +I QDEA+ IS+ I + R G ++ P R I F F+GP
Sbjct: 593 ESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKN-----PNRPIASFIFSGPTGV 647
Query: 524 GKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVA 583
GK ++A ALA +G +E I D+ + E + K G + G T +
Sbjct: 648 GKSELAKALAAYYFGSEEAMIRLDMS-EFMERHTVSKLI-----GSPPGYVGYTEGGQLT 701
Query: 584 WELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASS 639
+ ++P +VV + ++KA V N + + ++ G+L DS GR V N + + S+
Sbjct: 702 EAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 757
>sp|Q9Z8A6|CLPC_CHLPN Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2
Length = 845
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 37/220 (16%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L K+ Q++A++ I + I + RTG +D P R F F GP GK +A +A
Sbjct: 530 LRRKVIGQNDAVTSICRAIRRSRTGIKD-----PNRPTGSFLFLGPTGVGKSLLAQQIAI 584
Query: 535 IIYGGKENFICADLC------PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++GG++ I D+ M +PP + GG ++ ++ +
Sbjct: 585 EMFGGEDALIQVDMSEYMEKFAATKMMGSPPGYVGHEEGG------------HLTEQVRR 632
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED----- 643
+P VV + ++KA + + + + ++ G+L DS+GR+V +AI + S+ D
Sbjct: 633 RPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGRKVDFRHAIIIMTSNLGADLIRKS 692
Query: 644 ARI---LPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNR 680
I L S M D K +EKI A + ++P +NR
Sbjct: 693 GEIGFGLKSHM-DYKVIQEKIEHAMKK----HLKPEFINR 727
>sp|Q9HVN5|CLPB_PSEAE Chaperone protein ClpB OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=clpB PE=3 SV=1
Length = 854
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 22/171 (12%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEI 535
L ++ QDEA+ +S + + R G D + S F F GP GK ++ ALAE
Sbjct: 566 LHRRVIGQDEAVVAVSNAVRRSRAGLADPNRPSG----SFLFLGPTGVGKTELCKALAEF 621
Query: 536 IYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK 589
++ +E + D+ + + PP + GG Y+ + +K
Sbjct: 622 LFDTEEALVRIDMSEFMEKHSVARLIGAPPGYVGFEEGG------------YLTEAIRRK 669
Query: 590 PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
P SVV L+ V+KA V N L + ++ G+L DS+GR V N + V S+
Sbjct: 670 PYSVVLLDEVEKAHPDVFNILLQVLEDGRLTDSHGRTVDFRNTVVVMTSNL 720
>sp|Q73BY1|CLPB_BACC1 Chaperone protein ClpB OS=Bacillus cereus (strain ATCC 10987)
GN=clpB PE=3 SV=1
Length = 866
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 24/176 (13%)
Query: 472 LFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAI 530
L + L+E++ Q+EA+S++S + + R G +D P R I F F GP GK ++A
Sbjct: 568 LEQILSERVIGQEEAVSLVSDAVLRARAGIKD-----PNRPIGSFIFLGPTGVGKTELAK 622
Query: 531 ALAEIIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAW 584
LA+ ++ +E I D+ + + PP + VG + G L + V
Sbjct: 623 TLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPPGY----VGYEE----GGQLTEAVR- 673
Query: 585 ELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
+KP SV+ L+ ++KA V N L + + G++ DS GR V N + + S+
Sbjct: 674 ---RKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNI 726
>sp|Q8DTC7|CLPB_STRMU Chaperone protein ClpB OS=Streptococcus mutans serotype c (strain
ATCC 700610 / UA159) GN=clpB PE=3 SV=1
Length = 860
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAEII 536
+KI QD+A+ +SQ I + R G ++ P+R I F F GP GK +A LAE++
Sbjct: 566 QKIVGQDQAVQKVSQAIIRSRAGIQN-----PKRPIGSFLFLGPTGVGKTALAKRLAEVL 620
Query: 537 YGGKENFICADLCPQD-----GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 591
+G + + D+ + PP Y VG + G L + V L
Sbjct: 621 FGSELEMVRLDMSEYMEKHAVSRLVGPPPGY---VGYEE----GGQLTEAVRQRLY---- 669
Query: 592 SVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
S+V L+ ++KA V N+L + + G+L DS GR + N I + S+
Sbjct: 670 SIVLLDEIEKAHPDVFNTLLQVLDEGRLTDSKGRTIDFKNTILIMTSNI 718
>sp|Q6GBW3|CLPC_STAAS ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3
SV=1
Length = 818
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 30/189 (15%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L E++ Q +A++ IS+ + + R G +D P+R I F F GP GK ++A ALAE
Sbjct: 506 LHERVIGQKDAVNSISKAVRRARAGLKD-----PKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++G + I D+ + + PP + VG D G L + V +
Sbjct: 561 SMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGY----VGHDD----GGQLTEKVR----R 608
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 648
KP SV+ + ++KA V N L + + G L D+ GR V N I + S+ +
Sbjct: 609 KPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSN------VGA 662
Query: 649 SEMKDCKFS 657
E++D +F+
Sbjct: 663 QELQDQRFA 671
>sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3
SV=1
Length = 818
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 30/189 (15%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L E++ Q +A++ IS+ + + R G +D P+R I F F GP GK ++A ALAE
Sbjct: 506 LHERVIGQKDAVNSISKAVRRARAGLKD-----PKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++G + I D+ + + PP + VG D G L + V +
Sbjct: 561 SMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGY----VGHDD----GGQLTEKVR----R 608
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 648
KP SV+ + ++KA V N L + + G L D+ GR V N I + S+ +
Sbjct: 609 KPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSN------VGA 662
Query: 649 SEMKDCKFS 657
E++D +F+
Sbjct: 663 QELQDQRFA 671
>sp|Q7A797|CLPC_STAAN ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1
Length = 818
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 30/189 (15%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L E++ Q +A++ IS+ + + R G +D P+R I F F GP GK ++A ALAE
Sbjct: 506 LHERVIGQKDAVNSISKAVRRARAGLKD-----PKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++G + I D+ + + PP + VG D G L + V +
Sbjct: 561 SMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGY----VGHDD----GGQLTEKVR----R 608
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 648
KP SV+ + ++KA V N L + + G L D+ GR V N I + S+ +
Sbjct: 609 KPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSN------VGA 662
Query: 649 SEMKDCKFS 657
E++D +F+
Sbjct: 663 QELQDQRFA 671
>sp|Q99W78|CLPC_STAAM ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=clpC PE=1 SV=1
Length = 818
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 30/189 (15%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L E++ Q +A++ IS+ + + R G +D P+R I F F GP GK ++A ALAE
Sbjct: 506 LHERVIGQKDAVNSISKAVRRARAGLKD-----PKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++G + I D+ + + PP + VG D G L + V +
Sbjct: 561 SMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGY----VGHDD----GGQLTEKVR----R 608
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 648
KP SV+ + ++KA V N L + + G L D+ GR V N I + S+ +
Sbjct: 609 KPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSN------VGA 662
Query: 649 SEMKDCKFS 657
E++D +F+
Sbjct: 663 QELQDQRFA 671
>sp|P0C281|CLPC_STAAC ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1
Length = 818
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 30/189 (15%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L E++ Q +A++ IS+ + + R G +D P+R I F F GP GK ++A ALAE
Sbjct: 506 LHERVIGQKDAVNSISKAVRRARAGLKD-----PKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++G + I D+ + + PP + VG D G L + V +
Sbjct: 561 SMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGY----VGHDD----GGQLTEKVR----R 608
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 648
KP SV+ + ++KA V N L + + G L D+ GR V N I + S+ +
Sbjct: 609 KPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSN------VGA 662
Query: 649 SEMKDCKFS 657
E++D +F+
Sbjct: 663 QELQDQRFA 671
>sp|Q2YSD6|CLPC_STAAB ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=clpC PE=3 SV=1
Length = 818
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 30/189 (15%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L E++ Q +A++ IS+ + + R G +D P+R I F F GP GK ++A ALAE
Sbjct: 506 LHERVIGQKDAVNSISKAVRRARAGLKD-----PKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++G + I D+ + + PP + VG D G L + V +
Sbjct: 561 SMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGY----VGHDD----GGQLTEKVR----R 608
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 648
KP SV+ + ++KA V N L + + G L D+ GR V N I + S+ +
Sbjct: 609 KPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSN------VGA 662
Query: 649 SEMKDCKFS 657
E++D +F+
Sbjct: 663 QELQDQRFA 671
>sp|Q2G0P5|CLPC_STAA8 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1
SV=1
Length = 818
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 30/189 (15%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L E++ Q +A++ IS+ + + R G +D P+R I F F GP GK ++A ALAE
Sbjct: 506 LHERVIGQKDAVNSISKAVRRARAGLKD-----PKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++G + I D+ + + PP + VG D G L + V +
Sbjct: 561 SMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGY----VGHDD----GGQLTEKVR----R 608
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 648
KP SV+ + ++KA V N L + + G L D+ GR V N I + S+ +
Sbjct: 609 KPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSN------VGA 662
Query: 649 SEMKDCKFS 657
E++D +F+
Sbjct: 663 QELQDQRFA 671
>sp|Q2FJB5|CLPC_STAA3 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3
SV=1
Length = 818
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 30/189 (15%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L E++ Q +A++ IS+ + + R G +D P+R I F F GP GK ++A ALAE
Sbjct: 506 LHERVIGQKDAVNSISKAVRRARAGLKD-----PKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++G + I D+ + + PP + VG D G L + V +
Sbjct: 561 SMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGY----VGHDD----GGQLTEKVR----R 608
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 648
KP SV+ + ++KA V N L + + G L D+ GR V N I + S+ +
Sbjct: 609 KPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSN------VGA 662
Query: 649 SEMKDCKFS 657
E++D +F+
Sbjct: 663 QELQDQRFA 671
>sp|Q88Q71|CLPB_PSEPK Chaperone protein ClpB OS=Pseudomonas putida (strain KT2440)
GN=clpB PE=3 SV=1
Length = 854
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 22/171 (12%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEI 535
L +++ Q EA++ ++ + + R G D + S F F GP GK ++ ALAE
Sbjct: 566 LHQRVIGQSEAVTAVANAVRRSRAGLSDPNRPSG----SFLFLGPTGVGKTELCKALAEF 621
Query: 536 IYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK 589
++ +E + D+ + + PP + GG Y+ + +K
Sbjct: 622 LFDTEEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGG------------YLTEAVRRK 669
Query: 590 PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
P SVV L+ V+KA V N L + ++ G+L DS+GR V N + V S+
Sbjct: 670 PYSVVLLDEVEKAHPDVFNVLLQVLEDGRLTDSHGRTVDFRNTVIVMTSNL 720
>sp|P31541|CLPAA_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A,
chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1
Length = 926
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 125/292 (42%), Gaps = 50/292 (17%)
Query: 425 DLTERSQELSGCCSATVNGSISNQLAQSSSSSCP-----DLNCQFDLSNWK--------- 470
+L +R +L SA ++ + A+S + + + Q +S+W
Sbjct: 535 ELRDREMDLKAQISALIDKNKEKSKAESEAGDAAGPIVTEADIQHIVSSWTGIPVEKVST 594
Query: 471 -------TLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDL 522
+ L ++ QDEA+ IS+ I + R G ++ P R I F F+GP
Sbjct: 595 DESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKN-----PNRPIASFIFSGPTG 649
Query: 523 CGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYV 582
GK ++A +LA +G +E I D+ + E + K G + G T +
Sbjct: 650 VGKSELAKSLATYYFGSEEAMIRLDMS-EFMERHTVSKLI-----GSPPGYVGYTEGGQL 703
Query: 583 AWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFV----TAS 638
+ ++P +VV + ++KA V N + + ++ G+L DS GR V N + + S
Sbjct: 704 TEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGS 763
Query: 639 SFVEDA--RI---LPSEMKDCKFSEEKIYRAKSRLTQIL---IEPALVNRSS 682
S +E RI L + KD ++ R KS +T+ L P +NR S
Sbjct: 764 SVIEKGGRRIGFDLDFDEKDSSYN-----RIKSLVTEELKQYFRPEFLNRLS 810
>sp|P37571|CLPC_BACSU Negative regulator of genetic competence ClpC/MecB OS=Bacillus
subtilis (strain 168) GN=clpC PE=1 SV=1
Length = 810
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 25/155 (16%)
Query: 509 PRRDIW-FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGE------MNNPPKF 561
P+R I F F GP GK ++A ALAE I+G +E+ I D+ + + +PP +
Sbjct: 534 PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGY 593
Query: 562 YHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 621
VG D G L + V +KP SVV L+ ++KA V N L + ++ G+L D
Sbjct: 594 ----VGYDE----GGQLTEKVR----RKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTD 641
Query: 622 SYGREVSVSNAIFVTASSFVEDARILPSEMKDCKF 656
S GR V N I + S+ + SE+K K+
Sbjct: 642 SKGRTVDFRNTILIMTSN------VGASELKRNKY 670
>sp|Q7VQF3|CLPB_BLOFL Chaperone protein ClpB OS=Blochmannia floridanus GN=clpB PE=3 SV=1
Length = 872
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 15/179 (8%)
Query: 466 LSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCG 524
L N +T+ L + QDEA+ VIS I + R+G D P+R I F F GP G
Sbjct: 561 LLNMETILHQL---VIGQDEAVRVISNAIRRSRSGLSD-----PKRPIGSFMFLGPTGVG 612
Query: 525 KRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAW 584
K ++ AL++ ++ + D+ + E ++ K G + G Y+
Sbjct: 613 KTELCKALSQFLFDTDNAMVRIDMS-EFMEKHSVSKLL-----GAPPGYIGYESGAYLTE 666
Query: 585 ELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643
+ ++P S+V L+ ++KA + V N L + + G+L D+ GR V +N + + S+ D
Sbjct: 667 SIRRRPYSIVLLDEIEKAHLDVFNILLQVLDDGRLTDNQGRMVDFNNTVIIMTSNLGSD 725
>sp|Q889C2|CLPB_PSESM Chaperone protein ClpB OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=clpB PE=3 SV=1
Length = 854
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 22/171 (12%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEI 535
L ++ Q+EA+ +S + + R G D + S F F GP GK ++ ALAE
Sbjct: 566 LHNRVIGQEEAVVAVSNAVRRSRAGLSDPNRPSG----SFMFLGPTGVGKTELCKALAEF 621
Query: 536 IYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK 589
++ +E + D+ + + PP + GG Y+ + +K
Sbjct: 622 LFDTEEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGG------------YLTEAVRRK 669
Query: 590 PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
P SV+ L+ V+KA V N L + ++ G+L DS+GR V N + V S+
Sbjct: 670 PYSVILLDEVEKAHSDVFNILLQVLEDGRLTDSHGRTVDFRNTVIVMTSNL 720
>sp|Q8NXY8|CLPC_STAAW ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1
Length = 818
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 26/187 (13%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L E++ Q +A++ IS+ + + R G +D P+R I F F GP GK ++A ALAE
Sbjct: 506 LHERVIGQKDAVNSISKAVRRARAGLKD-----PKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 535 IIYGGKENFICADLCPQDGEMNNPPKFY--HQV--VGGDSVQFRGKTLADYVAWELLKKP 590
++G + I D+ +F H V + G + + G + ++ +KP
Sbjct: 561 SMFGDDDAMIRVDMS----------EFMEKHAVSRLVGAPLGYVGHDDGGQLTEKVRRKP 610
Query: 591 LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILPSE 650
SV+ + ++KA V N L + + G L D+ GR V N I + S+ + E
Sbjct: 611 YSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSN------VGAQE 664
Query: 651 MKDCKFS 657
++D +F+
Sbjct: 665 LQDQRFA 671
>sp|O67588|CLPB_AQUAE Chaperone protein ClpB OS=Aquifex aeolicus (strain VF5) GN=clpB
PE=3 SV=1
Length = 1006
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 24/165 (14%)
Query: 483 QDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAEIIYGGKE 541
Q+ A+ +++ I + R G +D P+R I F F GP GK +++ ALAE+++G ++
Sbjct: 694 QEHAVKAVAEAIRRARAGLKD-----PKRPIASFLFLGPTGVGKTELSKALAELLFGDED 748
Query: 542 NFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVY 595
I D+ E + PP + GG L + V +KP SV+
Sbjct: 749 ALIRLDMSEFKEEHSVAKLIGAPPGYVGYEEGG--------KLTEAVR----RKPYSVIL 796
Query: 596 LENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
L+ ++KA V + + + G+L DS+GR V N + + S+
Sbjct: 797 LDEIEKAHPRVLDLFLQVLDDGRLTDSHGRTVDFRNTVIIMTSNI 841
>sp|P53533|CLPB1_SYNE7 Chaperone protein ClpB 1 OS=Synechococcus elongatus (strain PCC
7942) GN=clpB1 PE=2 SV=3
Length = 874
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 33/215 (15%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L +++ Q+EA+S ++ I + R G D P+R I F F GP GK ++A ALA
Sbjct: 572 LHQRVIGQEEAVSAVADAIQRSRAGLSD-----PKRPIASFIFLGPTGVGKTELAKALAA 626
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++ ++ I D+ + + PP + VG D G L + V +
Sbjct: 627 YLFDTEDAMIRIDMSEYMEKHAVSRLIGAPPGY----VGYDE----GGQLTEAVR----R 674
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 648
+P SV+ + ++KA V N + + + G++ DS GR V N I + S+ + IL
Sbjct: 675 RPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSRGRTVDFKNTILILTSN-IGSQYILD 733
Query: 649 SEMKDCKFSEEKIYRAKSRLTQIL---IEPALVNR 680
D ++ E +SR+T+ L P +NR
Sbjct: 734 VAGDDSRYEE-----MRSRVTEALRANFRPEFLNR 763
>sp|Q7W9E6|CLPB_BORPA Chaperone protein ClpB OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=clpB PE=3 SV=1
Length = 865
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 24/172 (13%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L +++ QDEA+ ++S I + R G D P R F F GP GK ++ ALA+
Sbjct: 572 LHKRVVGQDEAVRLVSDAIRRSRAGLAD-----PSRPYGSFLFLGPTGVGKTELTRALAD 626
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++ +E+ I D+ + + PP + GG Y+ + +
Sbjct: 627 FLFDSEEHMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGG------------YLTEAVRR 674
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
KP SV+ L+ V+KA V N L + + G+L D GR V N + V S+
Sbjct: 675 KPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNL 726
>sp|Q7WHB6|CLPB_BORBR Chaperone protein ClpB OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=clpB PE=3 SV=1
Length = 865
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 24/172 (13%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L +++ QDEA+ ++S I + R G D P R F F GP GK ++ ALA+
Sbjct: 572 LHKRVVGQDEAVRLVSDAIRRSRAGLAD-----PSRPYGSFLFLGPTGVGKTELTRALAD 626
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++ +E+ I D+ + + PP + GG Y+ + +
Sbjct: 627 FLFDSEEHMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGG------------YLTEAVRR 674
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
KP SV+ L+ V+KA V N L + + G+L D GR V N + V S+
Sbjct: 675 KPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNL 726
>sp|Q7VYV6|CLPB_BORPE Chaperone protein ClpB OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=clpB PE=3 SV=1
Length = 865
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 24/172 (13%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L +++ QDEA+ ++S I + R G D P R F F GP GK ++ ALA+
Sbjct: 572 LHKRVVGQDEAVRLVSDAIRRSRAGLAD-----PSRPYGSFLFLGPTGVGKTELTRALAD 626
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++ +E+ I D+ + + PP + GG Y+ + +
Sbjct: 627 FLFDSEEHMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGG------------YLTEAVRR 674
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
KP SV+ L+ V+KA V N L + + G+L D GR V N + V S+
Sbjct: 675 KPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNL 726
>sp|Q8EW28|CLPB_MYCPE Chaperone protein ClpB OS=Mycoplasma penetrans (strain HF-2)
GN=clpB PE=3 SV=1
Length = 705
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 472 LFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAI 530
LF L +++ QDEA+ ++S T+ + R G + P R I F F GP GK ++A
Sbjct: 416 LFNNLKKRVKGQDEALKLVSDTVLKNRVGINN-----PNRPIGSFLFVGPTGVGKTEVAK 470
Query: 531 ALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQV--VGGDSVQFRGKTLADYVAWELLK 588
+LAE ++ ++ + ++ + H + + G + G A ++ ++ +
Sbjct: 471 SLAENLFNTEKAIVRINMSEYMEK--------HSISRLIGAPPGYIGYEQAGELSEQIRR 522
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASS 639
KP SVV L+ ++KA + N L + + G L D+ GR ++ N I + S+
Sbjct: 523 KPYSVVLLDEIEKAHPDILNVLLQVLDEGTLKDNQGRNINFKNTIIIMTSN 573
>sp|P74459|CLPB1_SYNY3 Chaperone protein ClpB 1 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=clpB1 PE=3 SV=1
Length = 898
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 24/175 (13%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L +++ Q EA++ +S I + R G +D P R I F F GP GK ++A ALA
Sbjct: 581 LHQRVIGQKEAVAAVSAAIRRARAGMKD-----PSRPIGSFLFMGPTGVGKTELARALAG 635
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++ +E + D+ + + PP + GG L++ V +
Sbjct: 636 FLFDSEEAMVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGG--------QLSEAVR----R 683
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643
+P SVV L+ V+KA + V N L + + G++ DS GR V N I V S+ D
Sbjct: 684 RPYSVVLLDEVEKAHLDVFNILLQVLDDGRITDSQGRVVDFRNTIIVMTSNIGSD 738
>sp|Q89YY3|CLPB_BACTN Chaperone protein ClpB OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=clpB
PE=3 SV=1
Length = 862
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 31/217 (14%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L +++ QDEAI ++ + + R G +D P+R I F F G GK ++A ALAE
Sbjct: 564 LHQRVIGQDEAIEAVADAVRRSRAGLQD-----PKRPIGSFIFLGTTGVGKTELAKALAE 618
Query: 535 IIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588
++ + D+ + + PP + VG D G L + + +
Sbjct: 619 FLFDDESMMTRIDMSEYQEKHSVSRLVGAPPGY----VGYDE----GGQLTEAIR----R 666
Query: 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILP 648
KP SVV + ++KA V N L + + G+L D+ GR V+ N I + S+ + +
Sbjct: 667 KPYSVVLFDEIEKAHPDVFNILLQVLDDGRLTDNKGRVVNFKNTIIIMTSNM--GSSYIQ 724
Query: 649 SEMKDCKFS--EEKIYRAKSRLTQIL---IEPALVNR 680
S+M+ S EE I K + +L I P +NR
Sbjct: 725 SQMEKLSGSNKEEVIEETKKEVMNMLKKNIRPEFLNR 761
>sp|Q9SXJ7|CLPC2_ARATH Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana
GN=CLPC2 PE=2 SV=1
Length = 952
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 29/218 (13%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAE 534
L ++ QDEA+ IS+ I + R G ++ P R I F F+GP GK ++A ALA
Sbjct: 627 LHTRVIGQDEAVKAISRAIRRARVGLKN-----PNRPIASFIFSGPTGVGKSELAKALAA 681
Query: 535 IIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVV 594
+G +E I D+ + E + K G + G T + + ++P ++V
Sbjct: 682 YYFGSEEAMIRLDMS-EFMERHTVSKLI-----GSPPGYVGYTEGGQLTEAVRRRPYTLV 735
Query: 595 YLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFV----TASSFVEDA--RI-- 646
+ ++KA V N + + ++ G+L DS GR V N + + SS +E RI
Sbjct: 736 LFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGF 795
Query: 647 -LPSEMKDCKFSEEKIYRAKSRLTQIL---IEPALVNR 680
L + KD ++ R KS +T+ L P +NR
Sbjct: 796 DLDHDEKDSSYN-----RIKSLVTEELKQYFRPEFLNR 828
>sp|Q1XDF4|CLPC_PORYE ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra yezoensis GN=clpC PE=3 SV=1
Length = 821
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAEIIY 537
+I QDEA+ +S+ I + R G ++ P R I F F+GP GK ++ ALA +
Sbjct: 513 RIIGQDEAVVAVSRAIRRARVGLKN-----PNRPIASFIFSGPTGVGKTELTKALASYFF 567
Query: 538 GGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLE 597
G + + I D+ + E + K G + G + Y+ + KKP +V+ +
Sbjct: 568 GSEASMIRLDMS-EYMERHTVSKLI-----GSPPGYVGYSEGGYLTEAVRKKPYTVILFD 621
Query: 598 NVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
++KA + N L + ++ G+L D+ GR + N + + S+
Sbjct: 622 EIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSNI 664
>sp|P51332|CLPC_PORPU ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra purpurea GN=clpC PE=3 SV=1
Length = 821
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIW-FNFTGPDLCGKRKIAIALAEIIY 537
+I QDEA+ +S+ I + R G ++ P R I F F+GP GK ++ ALA +
Sbjct: 513 RIIGQDEAVIAVSRAIRRARVGLKN-----PNRPIASFIFSGPTGVGKTELTKALASYFF 567
Query: 538 GGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLE 597
G + + I D+ + E + K G + G + Y+ + KKP +V+ +
Sbjct: 568 GSEASMIRLDMS-EYMERHTVSKLI-----GSPPGYVGYSEGGYLTEAVRKKPYTVILFD 621
Query: 598 NVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
++KA + N L + ++ G+L D+ GR + N + + S+
Sbjct: 622 EIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSNI 664
>sp|Q8XZR0|CLPB_RALSO Chaperone protein ClpB OS=Ralstonia solanacearum (strain GMI1000)
GN=clpB PE=3 SV=1
Length = 862
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 476 LTEKIDWQDEAISVISQTIAQRRTGHEDH---HGASPRRDIWFNFTGPDLCGKRKIAIAL 532
L E++ QDEA+ ++S I + R G D +G+ F F GP GK ++ AL
Sbjct: 569 LHERVVGQDEAVRLVSDAIRRSRAGIADENKPYGS-------FLFLGPTGVGKTELCKAL 621
Query: 533 AEIIYGGKENFICADLCPQDGE------MNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL 586
A ++ +E+ I D+ + + PP + GG Y+ +
Sbjct: 622 AGFLFDSEEHLIRIDMSEFMEKHSVSRLIGAPPGYVGYEEGG------------YLTEAV 669
Query: 587 LKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640
+KP SVV L+ V+KA V N L + + G+L D GR V N + V S+
Sbjct: 670 RRKPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNL 723
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 321,949,867
Number of Sequences: 539616
Number of extensions: 13657774
Number of successful extensions: 64669
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 63204
Number of HSP's gapped (non-prelim): 1331
length of query: 884
length of database: 191,569,459
effective HSP length: 127
effective length of query: 757
effective length of database: 123,038,227
effective search space: 93139937839
effective search space used: 93139937839
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)