Query 002758
Match_columns 884
No_of_seqs 326 out of 2451
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1051 Chaperone HSP104 and r 100.0 2.1E-74 4.5E-79 686.5 36.1 613 20-864 234-854 (898)
2 COG0542 clpA ATP-binding subun 100.0 2E-51 4.4E-56 484.9 25.9 299 461-863 474-775 (786)
3 CHL00095 clpC Clp protease ATP 100.0 6.6E-40 1.4E-44 401.9 30.1 306 464-864 495-803 (821)
4 TIGR03345 VI_ClpV1 type VI sec 100.0 5.4E-39 1.2E-43 393.0 29.2 291 465-859 553-847 (852)
5 PRK11034 clpA ATP-dependent Cl 100.0 4.1E-38 9E-43 379.1 26.8 291 464-864 444-737 (758)
6 TIGR02639 ClpA ATP-dependent C 100.0 1.4E-37 3E-42 377.4 29.4 286 465-860 441-729 (731)
7 TIGR03346 chaperone_ClpB ATP-d 100.0 2.1E-36 4.6E-41 372.0 30.4 291 464-861 551-844 (852)
8 PRK10865 protein disaggregatio 100.0 3.1E-35 6.7E-40 360.8 27.5 292 464-862 554-848 (857)
9 TIGR00382 clpX endopeptidase C 100.0 4.9E-29 1.1E-33 282.1 25.6 289 468-849 67-391 (413)
10 PRK05342 clpX ATP-dependent pr 100.0 9.9E-28 2.2E-32 272.5 25.4 297 467-849 60-385 (412)
11 COG1219 ClpX ATP-dependent pro 99.9 4.7E-23 1E-27 219.6 16.1 297 468-850 51-375 (408)
12 PF07724 AAA_2: AAA domain (Cd 99.9 7.8E-23 1.7E-27 207.1 8.6 113 513-644 4-133 (171)
13 KOG0745 Putative ATP-dependent 99.9 1.4E-21 2.9E-26 215.1 18.8 309 465-847 132-513 (564)
14 PRK05201 hslU ATP-dependent pr 99.8 2.7E-19 5.9E-24 201.0 20.6 86 764-849 318-413 (443)
15 TIGR00390 hslU ATP-dependent p 99.8 1.7E-18 3.6E-23 194.6 20.7 85 764-848 316-410 (441)
16 TIGR00763 lon ATP-dependent pr 99.8 4.1E-18 8.9E-23 208.9 24.1 244 465-850 307-562 (775)
17 COG3604 FhlA Transcriptional r 99.8 5E-18 1.1E-22 191.0 15.1 217 478-840 223-454 (550)
18 PRK10787 DNA-binding ATP-depen 99.7 1.9E-16 4E-21 193.4 24.9 242 465-851 309-564 (784)
19 KOG2170 ATPase of the AAA+ sup 99.7 2.3E-17 5.1E-22 175.8 14.3 156 468-645 72-229 (344)
20 COG3829 RocR Transcriptional r 99.7 9.1E-17 2E-21 183.2 14.6 218 478-840 245-477 (560)
21 COG2204 AtoC Response regulato 99.7 4.3E-16 9.4E-21 177.8 14.9 229 476-840 139-372 (464)
22 CHL00181 cbbX CbbX; Provisiona 99.6 9E-15 2E-19 160.0 19.8 226 465-849 10-261 (287)
23 COG0466 Lon ATP-dependent Lon 99.6 8.1E-15 1.8E-19 171.0 20.0 245 465-850 310-565 (782)
24 TIGR02974 phageshock_pspF psp 99.6 6.7E-15 1.5E-19 163.9 16.8 226 480-840 1-231 (329)
25 COG1220 HslU ATP-dependent pro 99.6 4E-14 8.8E-19 152.8 17.0 84 764-847 319-412 (444)
26 TIGR02880 cbbX_cfxQ probable R 99.6 1.7E-13 3.8E-18 149.7 22.1 219 468-847 12-258 (284)
27 TIGR01817 nifA Nif-specific re 99.6 4.4E-14 9.6E-19 167.1 18.7 226 478-840 196-426 (534)
28 PRK11608 pspF phage shock prot 99.5 1.5E-13 3.2E-18 153.0 16.5 229 477-840 5-238 (326)
29 PRK05022 anaerobic nitric oxid 99.5 2.3E-13 5E-18 160.1 18.3 227 478-840 187-418 (509)
30 PF05496 RuvB_N: Holliday junc 99.5 9.4E-13 2E-17 137.6 20.1 107 478-620 24-131 (233)
31 TIGR02329 propionate_PrpR prop 99.5 2.3E-13 5E-18 159.8 16.7 224 479-840 213-448 (526)
32 PRK15424 propionate catabolism 99.5 2.9E-13 6.2E-18 159.1 16.6 224 479-840 220-463 (538)
33 COG2256 MGS1 ATPase related to 99.5 4.1E-13 8.8E-18 148.7 16.7 105 478-620 24-134 (436)
34 TIGR02881 spore_V_K stage V sp 99.5 1.3E-12 2.7E-17 141.1 19.9 213 479-850 7-246 (261)
35 PRK11388 DNA-binding transcrip 99.5 5E-13 1.1E-17 161.4 16.2 224 478-840 325-552 (638)
36 KOG2004 Mitochondrial ATP-depe 99.4 2.5E-12 5.5E-17 149.6 18.7 245 466-851 399-654 (906)
37 PRK10820 DNA-binding transcrip 99.4 1.7E-12 3.7E-17 153.1 16.7 227 478-840 204-435 (520)
38 PF00158 Sigma54_activat: Sigm 99.4 4.4E-13 9.4E-18 135.7 9.8 142 480-640 1-143 (168)
39 PRK15429 formate hydrogenlyase 99.4 5.7E-12 1.2E-16 153.4 19.2 226 479-840 377-607 (686)
40 COG1221 PspF Transcriptional r 99.4 1.8E-12 4E-17 146.0 13.4 147 475-640 75-223 (403)
41 PRK10923 glnG nitrogen regulat 99.4 5.3E-12 1.1E-16 146.8 15.6 226 479-840 139-369 (469)
42 TIGR02902 spore_lonB ATP-depen 99.4 2.3E-11 4.9E-16 143.8 19.5 126 479-620 66-205 (531)
43 PRK14956 DNA polymerase III su 99.3 2.8E-11 6.1E-16 139.6 18.6 137 478-639 18-159 (484)
44 PRK07003 DNA polymerase III su 99.3 6E-11 1.3E-15 141.6 19.4 133 478-640 16-158 (830)
45 PRK14949 DNA polymerase III su 99.3 6.9E-11 1.5E-15 143.4 19.6 133 478-639 16-157 (944)
46 PRK13531 regulatory ATPase Rav 99.3 5.2E-11 1.1E-15 137.0 17.6 147 466-641 8-157 (498)
47 TIGR01818 ntrC nitrogen regula 99.3 3E-11 6.5E-16 140.1 15.4 226 479-840 135-365 (463)
48 PRK14960 DNA polymerase III su 99.3 7.2E-11 1.6E-15 139.7 18.0 133 478-639 15-156 (702)
49 PRK12323 DNA polymerase III su 99.3 7.4E-11 1.6E-15 139.3 18.1 132 478-639 16-162 (700)
50 TIGR00635 ruvB Holliday juncti 99.3 2.5E-10 5.4E-15 125.4 20.7 105 478-618 4-109 (305)
51 TIGR02915 PEP_resp_reg putativ 99.3 5.1E-11 1.1E-15 137.6 15.6 226 479-840 140-370 (445)
52 PLN03025 replication factor C 99.3 1.2E-10 2.6E-15 129.3 17.8 116 479-640 14-138 (319)
53 PRK13342 recombination factor 99.3 1.3E-10 2.9E-15 133.5 18.4 105 479-618 13-120 (413)
54 PRK14958 DNA polymerase III su 99.3 9.9E-11 2.2E-15 137.5 17.2 132 478-639 16-157 (509)
55 PRK07764 DNA polymerase III su 99.2 1.3E-10 2.9E-15 142.6 18.4 134 478-639 15-158 (824)
56 PRK14957 DNA polymerase III su 99.2 1.9E-10 4E-15 135.6 18.7 132 478-639 16-157 (546)
57 PRK14961 DNA polymerase III su 99.2 3.3E-10 7.2E-15 128.1 20.1 133 478-639 16-157 (363)
58 PRK00080 ruvB Holliday junctio 99.2 5.1E-10 1.1E-14 124.8 21.3 106 478-619 25-131 (328)
59 PRK11361 acetoacetate metaboli 99.2 2.6E-10 5.5E-15 132.1 19.3 226 479-840 144-374 (457)
60 PRK14959 DNA polymerase III su 99.2 2.1E-10 4.5E-15 136.1 18.6 133 478-639 16-157 (624)
61 PRK14951 DNA polymerase III su 99.2 2.6E-10 5.7E-15 135.9 19.5 132 478-639 16-162 (618)
62 PRK14952 DNA polymerase III su 99.2 3.4E-10 7.4E-15 134.4 19.8 135 478-639 13-156 (584)
63 PRK14964 DNA polymerase III su 99.2 3.8E-10 8.1E-15 131.4 19.5 132 478-639 13-154 (491)
64 PRK07994 DNA polymerase III su 99.2 2.7E-10 6E-15 136.1 18.5 132 478-639 16-157 (647)
65 PRK14962 DNA polymerase III su 99.2 3.8E-10 8.1E-15 131.5 19.1 132 478-639 14-155 (472)
66 COG3283 TyrR Transcriptional r 99.2 3E-10 6.4E-15 123.9 15.8 140 478-640 204-343 (511)
67 PRK15115 response regulator Gl 99.2 4.4E-10 9.5E-15 129.8 18.2 226 479-840 135-365 (444)
68 PRK13341 recombination factor 99.2 4.3E-10 9.3E-15 136.6 18.6 63 774-840 161-223 (725)
69 PRK08691 DNA polymerase III su 99.2 4.4E-10 9.4E-15 134.1 17.9 136 478-639 16-157 (709)
70 PRK05563 DNA polymerase III su 99.2 8.3E-10 1.8E-14 131.3 20.2 133 478-639 16-157 (559)
71 KOG0989 Replication factor C, 99.2 2.7E-10 5.8E-15 122.8 13.8 124 478-640 36-168 (346)
72 PRK06645 DNA polymerase III su 99.2 1.4E-09 3E-14 127.4 20.1 132 478-639 21-166 (507)
73 PRK14963 DNA polymerase III su 99.2 1.2E-09 2.7E-14 128.1 19.7 136 478-639 14-154 (504)
74 COG1223 Predicted ATPase (AAA+ 99.2 4.5E-10 9.8E-15 118.3 14.2 117 476-615 119-247 (368)
75 PRK14965 DNA polymerase III su 99.1 1E-09 2.2E-14 131.1 18.9 133 478-639 16-157 (576)
76 PRK07133 DNA polymerase III su 99.1 1.5E-09 3.2E-14 130.8 19.7 133 478-639 18-156 (725)
77 PRK14969 DNA polymerase III su 99.1 1.6E-09 3.5E-14 128.0 18.6 132 478-639 16-157 (527)
78 TIGR02903 spore_lon_C ATP-depe 99.1 5.7E-10 1.2E-14 134.0 14.9 125 479-620 155-295 (615)
79 PRK14955 DNA polymerase III su 99.1 2.1E-09 4.5E-14 123.1 18.8 132 478-639 16-165 (397)
80 CHL00195 ycf46 Ycf46; Provisio 99.1 1.6E-09 3.5E-14 126.4 18.2 71 514-603 261-331 (489)
81 PRK08451 DNA polymerase III su 99.1 3E-09 6.5E-14 125.0 20.3 132 478-639 14-155 (535)
82 PRK06305 DNA polymerase III su 99.1 2.7E-09 5.8E-14 123.9 19.4 133 478-639 17-159 (451)
83 PRK05896 DNA polymerase III su 99.1 2.4E-09 5.3E-14 126.6 18.9 132 478-639 16-157 (605)
84 PF06309 Torsin: Torsin; Inte 99.1 3.7E-10 8.1E-15 108.4 9.7 111 468-596 15-127 (127)
85 COG3284 AcoR Transcriptional a 99.1 3.1E-10 6.7E-15 132.4 11.0 118 512-640 336-456 (606)
86 TIGR02397 dnaX_nterm DNA polym 99.1 4.4E-09 9.5E-14 117.8 19.8 136 478-639 14-155 (355)
87 PRK09111 DNA polymerase III su 99.1 3.3E-09 7.1E-14 126.7 19.7 132 478-639 24-170 (598)
88 PRK14954 DNA polymerase III su 99.1 4.8E-09 1E-13 125.6 20.1 132 478-639 16-165 (620)
89 PRK14953 DNA polymerase III su 99.1 5.1E-09 1.1E-13 122.6 19.6 133 478-639 16-157 (486)
90 PRK06647 DNA polymerase III su 99.1 5.6E-09 1.2E-13 124.1 19.7 132 478-639 16-157 (563)
91 PRK14971 DNA polymerase III su 99.0 7.1E-09 1.5E-13 124.4 20.1 133 478-639 17-159 (614)
92 KOG2028 ATPase related to the 99.0 1.1E-09 2.4E-14 119.7 11.9 85 514-620 164-252 (554)
93 PRK12402 replication factor C 99.0 5.1E-09 1.1E-13 116.2 17.5 135 478-639 15-163 (337)
94 COG2255 RuvB Holliday junction 99.0 9.3E-09 2E-13 110.1 18.5 106 479-620 27-133 (332)
95 COG1222 RPT1 ATP-dependent 26S 99.0 6.3E-10 1.4E-14 122.0 9.9 129 479-640 152-299 (406)
96 PRK06893 DNA replication initi 99.0 5.8E-09 1.3E-13 110.7 16.8 56 774-840 154-209 (229)
97 TIGR02640 gas_vesic_GvpN gas v 99.0 1.7E-09 3.8E-14 117.0 13.0 136 484-640 4-160 (262)
98 PRK10365 transcriptional regul 99.0 1.1E-08 2.3E-13 118.0 20.3 225 480-840 141-370 (441)
99 COG0714 MoxR-like ATPases [Gen 99.0 1E-09 2.2E-14 122.5 10.4 143 468-641 14-164 (329)
100 PRK14948 DNA polymerase III su 99.0 1.3E-08 2.9E-13 122.2 20.2 132 478-639 16-159 (620)
101 KOG0730 AAA+-type ATPase [Post 99.0 4.7E-09 1E-13 122.6 15.7 126 479-640 435-579 (693)
102 PRK08903 DnaA regulatory inact 99.0 1.3E-08 2.7E-13 107.5 17.8 73 514-616 44-116 (227)
103 PRK14970 DNA polymerase III su 99.0 1.8E-08 3.8E-13 114.0 19.9 119 478-639 17-146 (367)
104 PHA02544 44 clamp loader, smal 99.0 2.1E-08 4.7E-13 110.7 20.0 113 479-639 22-139 (316)
105 PRK14950 DNA polymerase III su 99.0 1.4E-08 3.1E-13 121.6 19.7 132 478-639 16-158 (585)
106 TIGR03420 DnaA_homol_Hda DnaA 99.0 6.8E-09 1.5E-13 108.8 14.8 77 514-616 40-118 (226)
107 TIGR02442 Cob-chelat-sub cobal 99.0 1.4E-08 3E-13 122.8 19.3 137 478-640 4-178 (633)
108 PRK03992 proteasome-activating 99.0 4E-09 8.6E-14 120.5 13.9 129 479-640 132-279 (389)
109 PF07728 AAA_5: AAA domain (dy 99.0 1.1E-09 2.4E-14 106.4 7.6 116 514-642 1-125 (139)
110 PRK04195 replication factor C 99.0 2E-08 4.4E-13 117.8 19.2 104 479-616 15-128 (482)
111 PRK00440 rfc replication facto 99.0 3.1E-08 6.7E-13 109.0 19.3 116 479-639 18-140 (319)
112 TIGR00368 Mg chelatase-related 99.0 2.4E-08 5.2E-13 117.1 19.1 139 479-641 193-348 (499)
113 PRK08084 DNA replication initi 98.9 2.4E-08 5.1E-13 106.5 16.8 63 766-839 150-214 (235)
114 TIGR01243 CDC48 AAA family ATP 98.9 1.5E-08 3.2E-13 124.7 17.2 127 478-640 453-599 (733)
115 PF07726 AAA_3: ATPase family 98.9 5.7E-10 1.2E-14 107.5 3.8 105 514-640 1-112 (131)
116 PTZ00454 26S protease regulato 98.9 2.7E-08 5.8E-13 113.8 17.2 129 479-640 146-293 (398)
117 COG2812 DnaX DNA polymerase II 98.9 1.1E-08 2.5E-13 119.0 14.3 133 478-639 16-157 (515)
118 PRK13407 bchI magnesium chelat 98.9 2.3E-08 4.9E-13 111.8 16.1 147 479-640 9-180 (334)
119 PRK08727 hypothetical protein; 98.9 3.8E-08 8.3E-13 104.8 17.1 59 774-843 155-213 (233)
120 smart00350 MCM minichromosome 98.9 5.7E-08 1.2E-12 114.7 20.3 158 468-640 193-352 (509)
121 TIGR02639 ClpA ATP-dependent C 98.9 1.4E-08 3.1E-13 124.6 15.1 122 478-639 182-319 (731)
122 TIGR01650 PD_CobS cobaltochela 98.9 6.6E-08 1.4E-12 107.2 18.4 113 514-640 66-187 (327)
123 PF00004 AAA: ATPase family as 98.9 5.7E-09 1.2E-13 99.2 8.7 99 515-640 1-111 (132)
124 PRK07940 DNA polymerase III su 98.9 1.7E-08 3.7E-13 115.2 14.1 128 478-617 5-144 (394)
125 CHL00081 chlI Mg-protoporyphyr 98.9 3.8E-08 8.3E-13 110.4 15.6 143 478-640 17-196 (350)
126 TIGR03689 pup_AAA proteasome A 98.8 3E-08 6.4E-13 116.1 14.8 51 479-537 183-241 (512)
127 TIGR02030 BchI-ChlI magnesium 98.8 9.8E-08 2.1E-12 106.9 18.1 147 478-640 4-183 (337)
128 TIGR01242 26Sp45 26S proteasom 98.8 4.1E-08 9E-13 111.1 15.3 137 479-640 123-270 (364)
129 PF13177 DNA_pol3_delta2: DNA 98.8 1.5E-08 3.1E-13 102.2 9.7 131 482-640 1-141 (162)
130 TIGR03345 VI_ClpV1 type VI sec 98.8 4.8E-08 1E-12 121.4 16.2 122 478-639 187-324 (852)
131 TIGR02928 orc1/cdc6 family rep 98.8 7.6E-08 1.6E-12 108.3 16.5 148 478-640 15-174 (365)
132 PHA02244 ATPase-like protein 98.8 4.2E-08 9.2E-13 110.0 14.0 135 478-640 96-230 (383)
133 CHL00176 ftsH cell division pr 98.8 1.3E-07 2.9E-12 113.8 19.2 105 478-602 183-287 (638)
134 TIGR01241 FtsH_fam ATP-depende 98.8 9E-08 2E-12 112.7 17.2 103 479-603 56-160 (495)
135 PTZ00361 26 proteosome regulat 98.8 5.8E-08 1.3E-12 112.1 15.1 97 479-602 184-288 (438)
136 PRK09112 DNA polymerase III su 98.8 1.9E-07 4.2E-12 105.2 18.3 134 478-639 23-179 (351)
137 KOG0733 Nuclear AAA ATPase (VC 98.8 5.1E-08 1.1E-12 112.7 12.4 130 479-640 191-338 (802)
138 PLN00020 ribulose bisphosphate 98.7 2.3E-07 5E-12 103.7 17.0 112 511-640 147-277 (413)
139 TIGR00764 lon_rel lon-related 98.7 1.3E-07 2.9E-12 113.5 16.4 53 471-538 11-63 (608)
140 PRK05642 DNA replication initi 98.7 2.6E-07 5.7E-12 98.5 16.9 58 774-842 159-216 (234)
141 COG0464 SpoVK ATPases of the A 98.7 2.1E-07 4.5E-12 109.5 17.7 99 514-640 278-387 (494)
142 KOG0733 Nuclear AAA ATPase (VC 98.7 2.6E-08 5.7E-13 115.1 9.6 126 479-640 512-656 (802)
143 COG1224 TIP49 DNA helicase TIP 98.7 3.6E-07 7.7E-12 100.5 17.3 74 763-851 344-417 (450)
144 TIGR00678 holB DNA polymerase 98.7 3.5E-07 7.7E-12 93.8 16.4 108 514-639 16-134 (188)
145 PRK07399 DNA polymerase III su 98.7 1.1E-07 2.3E-12 105.8 12.5 137 477-639 3-161 (314)
146 PRK07471 DNA polymerase III su 98.7 7.3E-08 1.6E-12 109.1 11.3 139 478-640 19-180 (365)
147 KOG0727 26S proteasome regulat 98.7 5.9E-08 1.3E-12 102.0 9.6 102 515-641 192-304 (408)
148 COG0470 HolB ATPase involved i 98.7 1.1E-07 2.3E-12 104.8 12.3 137 479-640 2-148 (325)
149 PTZ00112 origin recognition co 98.7 3.8E-07 8.3E-12 110.1 17.6 144 478-639 755-910 (1164)
150 PF01078 Mg_chelatase: Magnesi 98.7 3.9E-08 8.4E-13 102.4 7.7 144 478-642 3-160 (206)
151 smart00763 AAA_PrkA PrkA AAA d 98.7 8E-07 1.7E-11 99.7 17.9 151 479-640 52-286 (361)
152 PF06068 TIP49: TIP49 C-termin 98.6 3.8E-07 8.2E-12 101.7 14.7 51 763-823 331-381 (398)
153 PRK13765 ATP-dependent proteas 98.6 1.8E-07 3.8E-12 112.5 13.0 52 471-537 24-75 (637)
154 PTZ00111 DNA replication licen 98.6 4.2E-07 9.2E-12 111.4 16.2 152 469-640 441-609 (915)
155 cd00009 AAA The AAA+ (ATPases 98.6 2.3E-07 5E-12 88.0 11.0 129 481-640 1-129 (151)
156 PRK00411 cdc6 cell division co 98.6 1E-06 2.2E-11 100.4 17.9 143 477-639 29-181 (394)
157 TIGR00362 DnaA chromosomal rep 98.6 4.7E-07 1E-11 104.0 15.1 57 774-841 261-317 (405)
158 PRK11034 clpA ATP-dependent Cl 98.6 3.7E-07 8E-12 111.9 14.9 129 478-640 186-324 (758)
159 PRK05564 DNA polymerase III su 98.6 1.8E-07 3.9E-12 103.8 11.2 124 478-639 4-131 (313)
160 PF14532 Sigma54_activ_2: Sigm 98.6 8.6E-08 1.9E-12 93.6 7.2 109 481-640 1-109 (138)
161 PRK10865 protein disaggregatio 98.6 5.7E-07 1.2E-11 112.2 15.6 123 478-640 178-316 (857)
162 PF00308 Bac_DnaA: Bacterial d 98.6 1.7E-06 3.6E-11 91.5 16.3 64 766-840 149-214 (219)
163 TIGR02031 BchD-ChlD magnesium 98.6 8.5E-07 1.8E-11 106.5 15.7 113 514-640 18-136 (589)
164 PF10431 ClpB_D2-small: C-term 98.6 2.4E-07 5.1E-12 82.6 8.2 80 781-860 1-81 (81)
165 PRK00149 dnaA chromosomal repl 98.5 7.7E-07 1.7E-11 103.7 14.5 63 768-841 265-329 (450)
166 CHL00095 clpC Clp protease ATP 98.5 1.8E-06 3.9E-11 107.6 17.8 116 478-620 179-309 (821)
167 KOG0738 AAA+-type ATPase [Post 98.5 6.2E-07 1.3E-11 99.6 12.0 112 479-616 213-342 (491)
168 PRK08058 DNA polymerase III su 98.5 6.6E-07 1.4E-11 100.2 11.9 134 478-639 5-148 (329)
169 KOG0736 Peroxisome assembly fa 98.5 3.3E-07 7.1E-12 108.6 9.8 99 479-604 673-778 (953)
170 CHL00206 ycf2 Ycf2; Provisiona 98.5 1.4E-06 3E-11 112.0 15.7 118 514-640 1632-1781(2281)
171 PRK12422 chromosomal replicati 98.5 1.5E-06 3.1E-11 101.1 14.6 55 774-839 264-318 (445)
172 KOG0734 AAA+-type ATPase conta 98.5 5.9E-07 1.3E-11 102.7 10.8 135 475-640 301-448 (752)
173 PRK11331 5-methylcytosine-spec 98.5 8.1E-07 1.8E-11 102.1 12.0 144 476-640 174-334 (459)
174 PRK06871 DNA polymerase III su 98.5 1.3E-06 2.8E-11 97.5 13.1 132 480-640 4-146 (325)
175 TIGR03346 chaperone_ClpB ATP-d 98.5 2.9E-06 6.2E-11 106.2 17.2 115 478-619 173-303 (852)
176 PRK14087 dnaA chromosomal repl 98.4 3.2E-06 7E-11 98.5 16.3 61 774-843 268-328 (450)
177 PRK04132 replication factor C 98.4 3.2E-06 7E-11 104.1 16.9 94 514-640 566-669 (846)
178 PRK08769 DNA polymerase III su 98.4 8.4E-07 1.8E-11 98.7 10.6 139 478-640 4-152 (319)
179 KOG0991 Replication factor C, 98.4 5.7E-07 1.2E-11 94.0 8.0 118 478-641 27-153 (333)
180 PRK07993 DNA polymerase III su 98.4 2E-06 4.4E-11 96.4 13.1 133 479-640 3-147 (334)
181 PRK14086 dnaA chromosomal repl 98.4 4.1E-06 8.9E-11 99.8 16.2 56 774-840 439-494 (617)
182 COG0606 Predicted ATPase with 98.4 1.3E-06 2.8E-11 99.9 11.4 139 478-641 179-336 (490)
183 PRK14088 dnaA chromosomal repl 98.4 3.7E-06 7.9E-11 97.8 15.2 56 774-840 256-311 (440)
184 PRK06090 DNA polymerase III su 98.4 2.5E-06 5.4E-11 95.0 13.1 134 478-640 3-147 (319)
185 COG1474 CDC6 Cdc6-related prot 98.4 4.2E-06 9.1E-11 95.0 14.6 145 478-640 17-165 (366)
186 PRK05707 DNA polymerase III su 98.4 3E-06 6.5E-11 94.9 13.2 130 480-640 5-145 (328)
187 PRK09087 hypothetical protein; 98.4 6.1E-06 1.3E-10 87.7 14.9 64 768-842 138-203 (226)
188 PF05673 DUF815: Protein of un 98.4 2.8E-05 6.1E-10 83.0 19.1 121 479-640 28-150 (249)
189 PRK06620 hypothetical protein; 98.3 9.1E-06 2E-10 85.7 15.2 54 775-839 141-194 (214)
190 TIGR01243 CDC48 AAA family ATP 98.3 1.9E-06 4E-11 106.3 11.5 125 480-640 180-323 (733)
191 KOG1942 DNA helicase, TBP-inte 98.3 1.6E-05 3.4E-10 85.7 16.0 51 763-823 350-400 (456)
192 KOG0726 26S proteasome regulat 98.3 1.7E-06 3.6E-11 93.0 7.2 129 479-640 186-333 (440)
193 KOG0731 AAA+-type ATPase conta 98.3 3.7E-06 8E-11 101.4 11.0 129 477-641 310-460 (774)
194 COG1241 MCM2 Predicted ATPase 98.2 2.8E-05 6.1E-10 93.6 18.1 135 471-623 279-416 (682)
195 TIGR00602 rad24 checkpoint pro 98.2 1.4E-05 3.1E-10 96.2 15.5 51 478-536 84-134 (637)
196 KOG0729 26S proteasome regulat 98.2 4E-06 8.8E-11 89.0 9.0 128 480-640 179-325 (435)
197 PRK10733 hflB ATP-dependent me 98.2 9.2E-06 2E-10 98.7 13.0 99 514-640 187-299 (644)
198 PRK12377 putative replication 98.2 3.8E-06 8.3E-11 90.4 8.4 104 514-643 103-208 (248)
199 PRK08699 DNA polymerase III su 98.2 4.8E-06 1E-10 93.1 9.2 123 480-617 3-140 (325)
200 PRK06964 DNA polymerase III su 98.2 4.6E-06 9.9E-11 93.7 8.5 135 480-640 3-171 (342)
201 smart00382 AAA ATPases associa 98.2 4.5E-06 9.7E-11 78.1 7.0 120 514-640 4-125 (148)
202 KOG2035 Replication factor C, 98.1 7.4E-06 1.6E-10 87.8 9.2 120 514-644 36-170 (351)
203 PRK09862 putative ATP-dependen 98.1 6.3E-06 1.4E-10 96.9 9.1 139 479-641 192-347 (506)
204 KOG0651 26S proteasome regulat 98.1 1.1E-05 2.4E-10 87.7 9.6 129 479-640 133-280 (388)
205 KOG0728 26S proteasome regulat 98.1 1E-05 2.2E-10 85.4 9.0 128 480-640 149-295 (404)
206 PRK05917 DNA polymerase III su 98.1 1.6E-05 3.4E-10 87.4 10.6 108 514-640 21-134 (290)
207 TIGR03015 pepcterm_ATPase puta 98.1 0.0001 2.2E-09 79.4 16.3 70 767-843 178-247 (269)
208 KOG0739 AAA+-type ATPase [Post 98.1 7.3E-06 1.6E-10 88.5 7.1 110 467-602 110-237 (439)
209 COG4650 RtcR Sigma54-dependent 98.0 6.7E-06 1.5E-10 88.4 6.2 100 514-621 210-313 (531)
210 KOG0735 AAA+-type ATPase [Post 98.0 1.7E-05 3.7E-10 93.7 9.7 118 478-616 667-797 (952)
211 COG1239 ChlI Mg-chelatase subu 97.9 5.7E-05 1.2E-09 85.6 11.8 147 475-641 14-197 (423)
212 COG0593 DnaA ATPase involved i 97.9 0.00034 7.5E-09 80.0 17.7 59 774-843 237-295 (408)
213 PRK08116 hypothetical protein; 97.9 5.6E-05 1.2E-09 82.5 10.8 106 514-643 116-223 (268)
214 KOG0744 AAA+-type ATPase [Post 97.9 3.2E-05 7E-10 84.5 8.7 107 514-640 179-306 (423)
215 COG0465 HflB ATP-dependent Zn 97.9 4.6E-05 9.9E-10 90.5 10.4 135 477-640 149-297 (596)
216 KOG0743 AAA+-type ATPase [Post 97.9 6.7E-05 1.4E-09 85.6 10.7 91 515-640 238-347 (457)
217 KOG0742 AAA+-type ATPase [Post 97.9 0.00044 9.6E-09 77.7 16.5 31 769-799 503-533 (630)
218 PRK07276 DNA polymerase III su 97.8 6E-05 1.3E-09 83.0 9.8 127 482-640 6-143 (290)
219 KOG0732 AAA+-type ATPase conta 97.8 6.9E-05 1.5E-09 93.0 10.7 131 479-640 266-415 (1080)
220 PRK06835 DNA replication prote 97.8 0.0001 2.2E-09 82.7 10.3 106 514-644 185-292 (329)
221 PF13173 AAA_14: AAA domain 97.8 7.7E-05 1.7E-09 71.9 8.1 84 514-617 4-87 (128)
222 PRK13406 bchD magnesium chelat 97.8 0.00019 4.1E-09 86.2 13.1 101 515-637 28-142 (584)
223 KOG0652 26S proteasome regulat 97.8 0.00012 2.6E-09 77.9 10.0 126 480-640 173-319 (424)
224 PRK06526 transposase; Provisio 97.7 2.4E-05 5.3E-10 84.6 4.1 102 514-643 100-203 (254)
225 PRK08939 primosomal protein Dn 97.7 9.1E-05 2E-09 82.3 8.7 102 514-641 158-261 (306)
226 KOG0737 AAA+-type ATPase [Post 97.7 4.7E-05 1E-09 84.8 6.1 67 513-602 128-198 (386)
227 KOG0741 AAA+-type ATPase [Post 97.7 4.5E-05 9.7E-10 87.7 5.7 135 462-640 224-378 (744)
228 PRK07952 DNA replication prote 97.7 0.00023 5.1E-09 76.6 11.0 106 514-644 101-208 (244)
229 PF13401 AAA_22: AAA domain; P 97.7 3.4E-05 7.4E-10 73.5 4.1 98 514-615 6-113 (131)
230 PF01695 IstB_IS21: IstB-like 97.7 2.7E-05 5.9E-10 79.8 3.6 102 514-643 49-152 (178)
231 PRK05818 DNA polymerase III su 97.7 0.00013 2.8E-09 78.9 8.6 106 514-640 9-127 (261)
232 PRK08181 transposase; Validate 97.6 7.8E-05 1.7E-09 81.3 6.3 102 514-643 108-211 (269)
233 COG1484 DnaC DNA replication p 97.6 0.00015 3.2E-09 78.5 7.6 103 514-643 107-211 (254)
234 KOG0740 AAA+-type ATPase [Post 97.6 0.00027 5.9E-09 81.0 9.9 97 479-601 154-256 (428)
235 COG2607 Predicted ATPase (AAA+ 97.6 0.0074 1.6E-07 64.3 19.6 120 480-640 62-183 (287)
236 PF12774 AAA_6: Hydrolytic ATP 97.5 0.00038 8.1E-09 74.4 9.8 100 515-641 35-144 (231)
237 PF00910 RNA_helicase: RNA hel 97.5 0.00034 7.4E-09 65.6 7.5 94 515-640 1-107 (107)
238 PRK06921 hypothetical protein; 97.5 0.00033 7.1E-09 76.4 8.4 102 514-644 119-228 (266)
239 KOG0478 DNA replication licens 97.4 0.00087 1.9E-08 79.5 12.1 136 469-621 420-557 (804)
240 PRK09183 transposase/IS protei 97.4 0.00015 3.2E-09 78.8 5.4 103 514-644 104-209 (259)
241 PF00493 MCM: MCM2/3/5 family 97.4 6.1E-05 1.3E-09 84.6 2.1 159 467-640 13-173 (331)
242 COG0542 clpA ATP-binding subun 97.4 0.00052 1.1E-08 83.8 10.0 116 478-620 170-301 (786)
243 KOG0480 DNA replication licens 97.4 0.00058 1.3E-08 80.4 9.3 159 466-643 333-497 (764)
244 PRK07132 DNA polymerase III su 97.3 0.0021 4.5E-08 71.4 12.6 103 514-639 20-128 (299)
245 KOG1969 DNA replication checkp 97.3 0.00062 1.3E-08 81.3 8.8 77 514-615 328-412 (877)
246 PF03215 Rad17: Rad17 cell cyc 97.3 0.0099 2.1E-07 70.7 18.9 50 480-537 21-70 (519)
247 COG5271 MDN1 AAA ATPase contai 97.2 0.0014 3E-08 83.1 10.2 113 514-638 151-266 (4600)
248 KOG0990 Replication factor C, 97.1 0.00041 8.8E-09 76.2 4.3 104 479-616 42-157 (360)
249 KOG0477 DNA replication licens 97.1 0.00043 9.3E-09 81.1 4.7 153 476-644 447-602 (854)
250 KOG0735 AAA+-type ATPase [Post 97.1 0.012 2.5E-07 70.6 15.8 72 514-601 433-505 (952)
251 PRK15455 PrkA family serine pr 97.0 0.00082 1.8E-08 79.6 6.2 60 479-547 77-136 (644)
252 KOG0730 AAA+-type ATPase [Post 97.0 0.0018 4E-08 76.8 8.4 102 512-640 218-329 (693)
253 TIGR02688 conserved hypothetic 96.9 0.0056 1.2E-07 70.4 11.5 98 514-641 211-313 (449)
254 PF12775 AAA_7: P-loop contain 96.9 0.0041 8.9E-08 68.1 10.1 117 514-641 35-158 (272)
255 KOG2227 Pre-initiation complex 96.9 0.0076 1.6E-07 69.4 12.2 126 477-618 149-284 (529)
256 KOG0741 AAA+-type ATPase [Post 96.7 0.005 1.1E-07 71.5 9.1 85 513-615 539-629 (744)
257 PF05729 NACHT: NACHT domain 96.7 0.0056 1.2E-07 60.1 7.9 98 514-616 2-115 (166)
258 cd01131 PilT Pilus retraction 96.7 0.013 2.8E-07 61.0 11.0 96 514-618 3-100 (198)
259 cd01120 RecA-like_NTPases RecA 96.6 0.0083 1.8E-07 58.4 8.6 35 515-549 2-36 (165)
260 KOG3347 Predicted nucleotide k 96.6 0.0041 8.9E-08 61.7 5.8 90 514-639 9-102 (176)
261 PF00931 NB-ARC: NB-ARC domain 96.4 0.0046 9.9E-08 67.1 6.0 85 514-603 21-114 (287)
262 TIGR01420 pilT_fam pilus retra 96.4 0.017 3.6E-07 65.4 10.5 96 514-618 124-221 (343)
263 PRK04296 thymidine kinase; Pro 96.3 0.02 4.3E-07 59.3 9.8 97 514-614 4-102 (190)
264 KOG2680 DNA helicase TIP49, TB 96.3 0.072 1.6E-06 58.4 14.0 76 763-852 341-416 (454)
265 PRK06581 DNA polymerase III su 96.3 0.036 7.8E-07 59.6 11.3 105 514-640 17-128 (263)
266 COG1618 Predicted nucleotide k 96.3 0.017 3.8E-07 58.2 8.3 27 512-538 5-31 (179)
267 KOG1808 AAA ATPase containing 96.3 0.011 2.4E-07 77.8 8.9 113 514-640 442-560 (1856)
268 KOG1514 Origin recognition com 96.2 0.15 3.2E-06 61.6 17.3 134 476-620 394-538 (767)
269 cd01129 PulE-GspE PulE/GspE Th 96.2 0.034 7.4E-07 60.7 11.3 93 514-618 82-175 (264)
270 COG5271 MDN1 AAA ATPase contai 96.2 0.024 5.1E-07 72.8 10.7 114 513-640 889-1008(4600)
271 PF05272 VirE: Virulence-assoc 96.2 0.027 5.8E-07 59.0 9.8 97 509-640 49-149 (198)
272 PF13207 AAA_17: AAA domain; P 96.1 0.0067 1.4E-07 57.1 4.6 23 514-536 1-23 (121)
273 TIGR01618 phage_P_loop phage n 96.1 0.012 2.6E-07 62.6 6.7 34 511-549 11-44 (220)
274 PF13604 AAA_30: AAA domain; P 96.1 0.022 4.7E-07 59.3 8.5 92 514-616 20-119 (196)
275 PRK14974 cell division protein 96.1 0.061 1.3E-06 60.8 12.6 102 512-615 140-249 (336)
276 KOG0736 Peroxisome assembly fa 96.0 0.035 7.6E-07 67.3 10.9 105 512-641 431-543 (953)
277 PRK10536 hypothetical protein; 96.0 0.041 8.9E-07 59.8 10.5 23 514-536 76-98 (262)
278 KOG1970 Checkpoint RAD17-RFC c 96.0 0.056 1.2E-06 63.5 12.2 47 484-536 88-134 (634)
279 PF01637 Arch_ATPase: Archaeal 96.0 0.018 3.9E-07 59.6 7.5 45 768-821 179-223 (234)
280 TIGR00064 ftsY signal recognit 95.8 0.038 8.1E-07 60.7 9.4 81 469-549 24-109 (272)
281 PRK05703 flhF flagellar biosyn 95.8 0.12 2.7E-06 60.2 13.9 116 514-642 223-344 (424)
282 PRK06696 uridine kinase; Valid 95.8 0.022 4.7E-07 60.4 7.1 56 484-549 4-59 (223)
283 PRK10867 signal recognition pa 95.7 0.071 1.5E-06 62.2 11.6 40 511-550 99-139 (433)
284 PHA00729 NTP-binding motif con 95.7 0.02 4.3E-07 61.1 6.3 24 514-537 19-42 (226)
285 TIGR01425 SRP54_euk signal rec 95.7 0.045 9.7E-07 63.6 9.6 163 466-644 45-228 (429)
286 PF00437 T2SE: Type II/IV secr 95.6 0.036 7.8E-07 60.1 8.3 93 514-618 129-222 (270)
287 COG0529 CysC Adenylylsulfate k 95.6 0.015 3.3E-07 59.4 4.7 38 512-549 23-60 (197)
288 COG3854 SpoIIIAA ncharacterize 95.6 0.039 8.4E-07 58.7 7.8 91 514-617 139-243 (308)
289 PF03969 AFG1_ATPase: AFG1-lik 95.5 0.072 1.6E-06 60.8 10.4 120 514-662 64-183 (362)
290 KOG0481 DNA replication licens 95.5 0.043 9.3E-07 63.8 8.3 147 458-621 301-459 (729)
291 KOG0479 DNA replication licens 95.5 0.033 7.2E-07 65.5 7.5 161 469-644 292-454 (818)
292 PRK12723 flagellar biosynthesi 95.4 0.16 3.5E-06 58.5 13.1 117 512-643 174-300 (388)
293 PRK11889 flhF flagellar biosyn 95.4 0.15 3.3E-06 58.6 12.6 100 513-616 242-348 (436)
294 TIGR02782 TrbB_P P-type conjug 95.4 0.08 1.7E-06 58.9 10.3 93 514-618 134-229 (299)
295 PF03266 NTPase_1: NTPase; In 95.4 0.014 3E-07 59.5 3.9 23 514-536 1-23 (168)
296 cd01130 VirB11-like_ATPase Typ 95.4 0.082 1.8E-06 54.4 9.6 95 514-618 27-125 (186)
297 PRK12724 flagellar biosynthesi 95.4 0.16 3.4E-06 58.9 12.7 121 512-643 223-347 (432)
298 PF13191 AAA_16: AAA ATPase do 95.4 0.013 2.9E-07 58.8 3.7 61 480-550 2-62 (185)
299 PF05970 PIF1: PIF1-like helic 95.3 0.058 1.3E-06 61.5 9.0 137 483-638 6-148 (364)
300 PHA02774 E1; Provisional 95.3 0.077 1.7E-06 63.4 10.1 94 514-640 436-532 (613)
301 PF08298 AAA_PrkA: PrkA AAA do 95.2 0.036 7.8E-07 62.5 6.6 63 478-549 61-123 (358)
302 TIGR02525 plasmid_TraJ plasmid 95.2 0.1 2.2E-06 59.8 10.4 96 514-618 151-251 (372)
303 TIGR02524 dot_icm_DotB Dot/Icm 95.2 0.11 2.4E-06 59.2 10.7 98 514-618 136-238 (358)
304 PRK00131 aroK shikimate kinase 95.2 0.023 5E-07 56.7 4.5 24 513-536 5-28 (175)
305 TIGR00959 ffh signal recogniti 95.1 0.098 2.1E-06 61.0 9.9 40 511-550 98-138 (428)
306 PRK13894 conjugal transfer ATP 95.0 0.11 2.4E-06 58.4 9.9 92 514-618 150-244 (319)
307 PRK10416 signal recognition pa 95.0 0.11 2.3E-06 58.5 9.6 39 512-550 114-152 (318)
308 PF05621 TniB: Bacterial TniB 95.0 0.17 3.7E-06 56.1 10.9 134 471-615 27-173 (302)
309 PRK08118 topology modulation p 94.9 0.024 5.1E-07 57.6 3.8 31 514-547 3-33 (167)
310 PRK13833 conjugal transfer pro 94.9 0.16 3.5E-06 57.1 10.7 93 514-618 146-240 (323)
311 PRK00771 signal recognition pa 94.9 0.1 2.2E-06 61.0 9.4 40 511-550 94-133 (437)
312 PF13671 AAA_33: AAA domain; P 94.9 0.023 5.1E-07 54.9 3.5 23 514-536 1-23 (143)
313 TIGR02538 type_IV_pilB type IV 94.9 0.19 4E-06 60.8 11.9 94 514-619 318-412 (564)
314 PRK14722 flhF flagellar biosyn 94.9 0.56 1.2E-05 53.9 15.0 24 513-536 138-161 (374)
315 PF01583 APS_kinase: Adenylyls 94.8 0.034 7.4E-07 56.1 4.5 99 512-620 2-102 (156)
316 TIGR02533 type_II_gspE general 94.7 0.13 2.8E-06 61.1 9.7 94 514-619 244-338 (486)
317 PF12780 AAA_8: P-loop contain 94.7 0.13 2.7E-06 56.5 8.9 107 480-621 10-120 (268)
318 PRK13947 shikimate kinase; Pro 94.6 0.036 7.8E-07 55.6 4.3 31 514-547 3-33 (171)
319 PRK13900 type IV secretion sys 94.6 0.2 4.4E-06 56.5 10.6 95 514-618 162-260 (332)
320 PRK13851 type IV secretion sys 94.6 0.21 4.5E-06 56.7 10.7 95 514-618 164-261 (344)
321 PRK05541 adenylylsulfate kinas 94.5 0.045 9.7E-07 55.5 4.7 36 513-548 8-43 (176)
322 TIGR03499 FlhF flagellar biosy 94.5 0.18 3.9E-06 55.6 9.6 80 468-549 152-233 (282)
323 PF13479 AAA_24: AAA domain 94.4 0.1 2.3E-06 54.9 7.4 22 511-532 2-23 (213)
324 PRK10436 hypothetical protein; 94.4 0.2 4.4E-06 59.0 10.5 94 514-619 220-314 (462)
325 COG2804 PulE Type II secretory 94.4 0.21 4.5E-06 58.7 10.2 94 514-620 260-355 (500)
326 PF13238 AAA_18: AAA domain; P 94.4 0.036 7.8E-07 52.2 3.4 22 515-536 1-22 (129)
327 PRK03839 putative kinase; Prov 94.4 0.041 8.9E-07 56.0 4.0 23 514-536 2-24 (180)
328 TIGR02788 VirB11 P-type DNA tr 94.2 0.19 4.2E-06 56.0 9.3 96 514-617 146-242 (308)
329 cd02019 NK Nucleoside/nucleoti 94.1 0.068 1.5E-06 46.1 4.3 22 515-536 2-23 (69)
330 PRK06762 hypothetical protein; 94.1 0.068 1.5E-06 53.5 4.9 24 513-536 3-26 (166)
331 PF04851 ResIII: Type III rest 94.1 0.081 1.7E-06 52.7 5.5 46 481-538 6-51 (184)
332 COG1936 Predicted nucleotide k 94.1 0.086 1.9E-06 53.9 5.5 21 514-534 2-22 (180)
333 KOG0482 DNA replication licens 94.1 0.16 3.4E-06 59.2 8.2 130 469-622 333-471 (721)
334 cd00464 SK Shikimate kinase (S 94.1 0.053 1.1E-06 53.1 4.0 22 515-536 2-23 (154)
335 PRK08233 hypothetical protein; 94.0 0.069 1.5E-06 53.8 4.9 35 513-549 4-38 (182)
336 TIGR01359 UMP_CMP_kin_fam UMP- 94.0 0.05 1.1E-06 55.2 3.7 30 515-549 2-31 (183)
337 PRK07261 topology modulation p 94.0 0.056 1.2E-06 55.0 4.0 31 514-547 2-32 (171)
338 PRK00625 shikimate kinase; Pro 93.8 0.069 1.5E-06 54.7 4.3 31 514-547 2-32 (173)
339 cd01121 Sms Sms (bacterial rad 93.7 0.27 5.8E-06 56.5 9.4 83 514-602 84-170 (372)
340 PRK06067 flagellar accessory p 93.7 0.25 5.4E-06 52.5 8.7 37 513-549 26-62 (234)
341 PLN02200 adenylate kinase fami 93.7 0.094 2E-06 56.2 5.4 36 509-549 40-75 (234)
342 PRK06217 hypothetical protein; 93.7 0.065 1.4E-06 54.8 4.0 23 514-536 3-25 (183)
343 TIGR03819 heli_sec_ATPase heli 93.6 0.46 1E-05 53.9 10.9 98 514-618 180-278 (340)
344 PRK05480 uridine/cytidine kina 93.6 0.09 2E-06 54.8 4.9 25 512-536 6-30 (209)
345 COG1373 Predicted ATPase (AAA+ 93.5 0.29 6.2E-06 56.7 9.3 84 514-619 39-122 (398)
346 TIGR01313 therm_gnt_kin carboh 93.5 0.061 1.3E-06 53.6 3.4 22 515-536 1-22 (163)
347 COG0563 Adk Adenylate kinase a 93.5 0.066 1.4E-06 55.1 3.6 31 514-549 2-32 (178)
348 cd02021 GntK Gluconate kinase 93.5 0.072 1.6E-06 52.3 3.8 22 515-536 2-23 (150)
349 PF09848 DUF2075: Uncharacteri 93.5 0.23 4.9E-06 56.4 8.3 23 514-536 3-25 (352)
350 cd00227 CPT Chloramphenicol (C 93.4 0.076 1.7E-06 53.9 3.9 33 514-549 4-36 (175)
351 PRK03846 adenylylsulfate kinas 93.3 0.11 2.4E-06 53.9 5.0 38 512-549 24-61 (198)
352 TIGR02858 spore_III_AA stage I 93.3 0.16 3.4E-06 55.8 6.4 25 514-538 113-137 (270)
353 PRK00889 adenylylsulfate kinas 93.3 0.12 2.5E-06 52.4 5.0 36 514-549 6-41 (175)
354 cd02027 APSK Adenosine 5'-phos 93.2 0.09 2E-06 52.2 4.1 34 515-548 2-35 (149)
355 PHA01747 putative ATP-dependen 93.2 0.28 6.1E-06 55.6 8.1 99 510-640 188-300 (425)
356 PRK08154 anaerobic benzoate ca 93.2 0.23 5.1E-06 55.4 7.6 67 470-547 99-165 (309)
357 PF06048 DUF927: Domain of unk 93.2 0.38 8.2E-06 53.1 9.2 114 469-617 156-269 (286)
358 KOG1051 Chaperone HSP104 and r 93.1 0.0084 1.8E-07 74.5 -4.3 126 731-860 763-890 (898)
359 cd02020 CMPK Cytidine monophos 93.0 0.099 2.1E-06 50.6 3.9 22 515-536 2-23 (147)
360 PRK06547 hypothetical protein; 92.9 0.12 2.6E-06 52.9 4.5 24 513-536 16-39 (172)
361 PRK13949 shikimate kinase; Pro 92.9 0.093 2E-06 53.4 3.7 23 514-536 3-25 (169)
362 PRK07667 uridine kinase; Provi 92.9 0.23 5.1E-06 51.4 6.6 37 513-549 18-54 (193)
363 cd02023 UMPK Uridine monophosp 92.8 0.12 2.7E-06 53.3 4.4 22 515-536 2-23 (198)
364 PRK03731 aroL shikimate kinase 92.7 0.13 2.9E-06 51.6 4.4 31 514-547 4-34 (171)
365 PRK14532 adenylate kinase; Pro 92.6 0.12 2.6E-06 52.8 4.1 31 514-549 2-32 (188)
366 PRK13948 shikimate kinase; Pro 92.6 0.14 3.1E-06 52.8 4.6 32 513-547 11-42 (182)
367 TIGR03574 selen_PSTK L-seryl-t 92.6 0.12 2.5E-06 55.6 4.1 33 515-547 2-34 (249)
368 PF02562 PhoH: PhoH-like prote 92.6 0.81 1.8E-05 48.3 10.1 32 514-545 21-54 (205)
369 COG3267 ExeA Type II secretory 92.5 0.6 1.3E-05 50.6 9.2 99 514-615 53-156 (269)
370 TIGR00235 udk uridine kinase. 92.5 0.15 3.2E-06 53.3 4.6 26 512-537 6-31 (207)
371 cd03115 SRP The signal recogni 92.5 0.17 3.7E-06 51.0 4.9 37 514-550 2-38 (173)
372 PRK05537 bifunctional sulfate 92.4 0.39 8.5E-06 58.1 8.7 73 470-549 356-430 (568)
373 PRK04220 2-phosphoglycerate ki 92.3 0.3 6.6E-06 54.3 6.9 59 478-536 52-116 (301)
374 TIGR01448 recD_rel helicase, p 92.2 0.42 9E-06 59.5 8.8 92 514-616 340-442 (720)
375 PRK09270 nucleoside triphospha 92.2 0.28 6E-06 52.2 6.4 28 512-539 33-60 (229)
376 TIGR02322 phosphon_PhnN phosph 92.2 0.12 2.5E-06 52.4 3.4 24 514-537 3-26 (179)
377 PRK11823 DNA repair protein Ra 92.2 0.46 9.9E-06 55.8 8.7 83 514-602 82-168 (446)
378 PRK14530 adenylate kinase; Pro 92.2 0.15 3.2E-06 53.6 4.1 23 514-536 5-27 (215)
379 PTZ00088 adenylate kinase 1; P 92.1 0.17 3.8E-06 54.1 4.7 32 513-549 7-38 (229)
380 cd01428 ADK Adenylate kinase ( 92.1 0.15 3.2E-06 52.1 4.0 30 515-549 2-31 (194)
381 PRK05057 aroK shikimate kinase 92.1 0.16 3.4E-06 51.8 4.2 31 514-547 6-36 (172)
382 PF01443 Viral_helicase1: Vira 92.1 0.26 5.7E-06 51.7 5.9 26 590-615 62-87 (234)
383 TIGR00150 HI0065_YjeE ATPase, 92.1 0.3 6.6E-06 48.0 5.9 41 485-536 6-46 (133)
384 TIGR01360 aden_kin_iso1 adenyl 92.0 0.13 2.9E-06 52.0 3.5 23 514-536 5-27 (188)
385 PF01745 IPT: Isopentenyl tran 92.0 0.19 4E-06 53.2 4.5 33 514-549 3-35 (233)
386 cd01124 KaiC KaiC is a circadi 92.0 0.18 3.8E-06 51.1 4.3 35 515-549 2-36 (187)
387 TIGR02768 TraA_Ti Ti-type conj 92.0 0.52 1.1E-05 58.8 9.2 91 514-615 370-464 (744)
388 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.9 0.45 9.7E-06 47.0 7.0 86 514-616 28-115 (144)
389 PF00448 SRP54: SRP54-type pro 91.9 0.19 4.1E-06 52.5 4.5 117 513-643 2-128 (196)
390 PRK13764 ATPase; Provisional 91.9 0.68 1.5E-05 56.2 9.8 34 514-547 259-292 (602)
391 TIGR01613 primase_Cterm phage/ 91.9 0.96 2.1E-05 50.3 10.3 133 475-640 46-181 (304)
392 cd01672 TMPK Thymidine monopho 91.8 0.17 3.8E-06 51.3 4.1 31 514-544 2-32 (200)
393 cd01853 Toc34_like Toc34-like 91.8 2.3 5E-05 46.1 12.9 23 512-534 31-53 (249)
394 PF13245 AAA_19: Part of AAA d 91.8 0.22 4.7E-06 44.2 4.1 23 514-536 12-35 (76)
395 PF00485 PRK: Phosphoribulokin 91.7 0.23 4.9E-06 51.4 4.9 25 514-538 1-25 (194)
396 COG0703 AroK Shikimate kinase 91.7 0.15 3.2E-06 52.3 3.3 23 514-536 4-26 (172)
397 PRK13946 shikimate kinase; Pro 91.6 0.17 3.7E-06 51.9 3.8 23 514-536 12-34 (184)
398 TIGR02237 recomb_radB DNA repa 91.6 0.24 5.2E-06 51.4 4.9 37 513-549 13-49 (209)
399 PF13086 AAA_11: AAA domain; P 91.5 0.26 5.7E-06 50.9 5.1 23 514-536 19-41 (236)
400 TIGR00455 apsK adenylylsulfate 91.4 0.26 5.6E-06 50.4 4.9 38 512-549 18-55 (184)
401 cd03222 ABC_RNaseL_inhibitor T 91.4 0.61 1.3E-05 48.0 7.5 89 514-616 27-116 (177)
402 PRK00091 miaA tRNA delta(2)-is 91.3 0.22 4.7E-06 55.7 4.5 32 513-547 5-36 (307)
403 PRK10875 recD exonuclease V su 91.3 0.98 2.1E-05 55.2 10.4 27 591-617 266-292 (615)
404 PRK02496 adk adenylate kinase; 91.2 0.19 4.2E-06 51.2 3.6 23 514-536 3-25 (184)
405 PRK14531 adenylate kinase; Pro 91.1 0.18 3.9E-06 51.7 3.3 23 514-536 4-26 (183)
406 TIGR01447 recD exodeoxyribonuc 91.1 0.58 1.2E-05 56.9 8.1 28 590-617 259-286 (586)
407 TIGR00554 panK_bact pantothena 91.0 0.9 1.9E-05 50.5 8.9 28 510-537 60-87 (290)
408 cd02028 UMPK_like Uridine mono 91.0 0.23 5E-06 50.9 4.0 35 515-549 2-36 (179)
409 PRK14527 adenylate kinase; Pro 91.0 0.21 4.6E-06 51.4 3.8 24 513-536 7-30 (191)
410 PRK13975 thymidylate kinase; P 91.0 0.19 4E-06 51.6 3.3 24 514-537 4-27 (196)
411 COG1643 HrpA HrpA-like helicas 90.9 1.1 2.4E-05 56.4 10.4 121 514-643 67-208 (845)
412 COG2805 PilT Tfp pilus assembl 90.9 0.9 2E-05 50.4 8.5 99 514-621 127-227 (353)
413 PF04665 Pox_A32: Poxvirus A32 90.9 1.3 2.9E-05 47.8 9.7 30 511-540 12-41 (241)
414 cd02025 PanK Pantothenate kina 90.8 0.25 5.5E-06 52.4 4.2 23 515-537 2-24 (220)
415 PRK00279 adk adenylate kinase; 90.8 0.23 5.1E-06 52.1 3.9 31 514-549 2-32 (215)
416 PRK14729 miaA tRNA delta(2)-is 90.7 0.26 5.7E-06 54.9 4.4 30 514-547 6-35 (300)
417 PLN02165 adenylate isopentenyl 90.7 0.24 5.3E-06 55.8 4.1 24 514-537 45-68 (334)
418 COG4088 Predicted nucleotide k 90.7 0.19 4.2E-06 52.8 3.0 27 514-540 3-29 (261)
419 cd03243 ABC_MutS_homologs The 90.7 0.97 2.1E-05 47.0 8.3 24 514-537 31-54 (202)
420 KOG1968 Replication factor C, 90.6 0.19 4.1E-06 63.2 3.5 91 514-615 359-456 (871)
421 PRK14528 adenylate kinase; Pro 90.5 0.3 6.4E-06 50.4 4.3 23 514-536 3-25 (186)
422 PRK09361 radB DNA repair and r 90.5 0.36 7.9E-06 50.8 5.0 37 513-549 24-60 (225)
423 PRK12726 flagellar biosynthesi 90.4 1.1 2.3E-05 51.7 8.9 38 513-550 207-244 (407)
424 COG1102 Cmk Cytidylate kinase 90.4 0.28 6.1E-06 49.7 3.8 23 514-536 2-24 (179)
425 cd01394 radB RadB. The archaea 90.4 0.37 8E-06 50.5 4.9 36 513-548 20-55 (218)
426 PRK14738 gmk guanylate kinase; 90.3 0.27 5.9E-06 51.5 3.9 23 513-535 14-36 (206)
427 PRK06995 flhF flagellar biosyn 90.3 0.8 1.7E-05 54.2 8.1 24 513-536 257-280 (484)
428 COG1485 Predicted ATPase [Gene 90.3 1.1 2.4E-05 50.7 8.7 161 470-662 13-186 (367)
429 PRK15453 phosphoribulokinase; 90.3 0.66 1.4E-05 51.2 6.9 37 513-549 6-42 (290)
430 PRK00300 gmk guanylate kinase; 90.2 0.25 5.4E-06 51.1 3.5 23 514-536 7-29 (205)
431 PRK10078 ribose 1,5-bisphospho 90.2 0.2 4.4E-06 51.4 2.7 23 514-536 4-26 (186)
432 PRK05439 pantothenate kinase; 90.2 1.1 2.4E-05 50.2 8.7 27 511-537 85-111 (311)
433 PLN02924 thymidylate kinase 90.1 0.48 1E-05 50.4 5.6 40 500-540 5-44 (220)
434 PF06414 Zeta_toxin: Zeta toxi 90.1 0.35 7.5E-06 50.2 4.4 39 510-550 13-51 (199)
435 PLN02840 tRNA dimethylallyltra 90.0 0.38 8.2E-06 55.9 5.0 33 513-548 22-54 (421)
436 KOG2680 DNA helicase TIP49, TB 90.0 0.59 1.3E-05 51.6 6.1 65 477-550 39-103 (454)
437 PF13555 AAA_29: P-loop contai 90.0 0.4 8.6E-06 41.0 3.8 27 514-540 25-51 (62)
438 cd01128 rho_factor Transcripti 89.9 0.82 1.8E-05 49.6 7.3 25 514-538 18-42 (249)
439 TIGR02653 Lon_rel_chp conserve 89.9 1.4 3.1E-05 53.5 9.8 93 766-864 387-480 (675)
440 PLN02674 adenylate kinase 89.9 0.51 1.1E-05 51.1 5.6 31 514-549 33-63 (244)
441 TIGR00041 DTMP_kinase thymidyl 89.8 0.35 7.6E-06 49.5 4.2 25 514-538 5-29 (195)
442 PRK00698 tmk thymidylate kinas 89.8 0.33 7.1E-06 50.0 3.9 25 513-537 4-28 (205)
443 cd03281 ABC_MSH5_euk MutS5 hom 89.7 1 2.2E-05 47.6 7.6 22 514-535 31-52 (213)
444 PRK13826 Dtr system oriT relax 89.6 0.57 1.2E-05 60.4 6.6 92 514-616 399-494 (1102)
445 PF05609 LAP1C: Lamina-associa 89.6 3.6 7.7E-05 48.4 12.5 146 466-640 247-396 (465)
446 TIGR03263 guanyl_kin guanylate 89.6 0.24 5.1E-06 50.1 2.7 23 514-536 3-25 (180)
447 PHA02624 large T antigen; Prov 89.6 0.53 1.2E-05 56.7 5.9 26 514-539 433-458 (647)
448 PF00406 ADK: Adenylate kinase 89.6 0.3 6.4E-06 48.2 3.3 28 517-549 1-28 (151)
449 PHA02530 pseT polynucleotide k 89.5 0.3 6.4E-06 53.7 3.6 32 514-549 4-35 (300)
450 TIGR01351 adk adenylate kinase 89.4 0.28 6.1E-06 51.3 3.1 30 515-549 2-31 (210)
451 COG0324 MiaA tRNA delta(2)-iso 89.4 0.41 8.8E-06 53.4 4.5 31 514-547 5-35 (308)
452 PLN02199 shikimate kinase 89.3 0.87 1.9E-05 50.6 6.9 31 514-547 104-134 (303)
453 cd00071 GMPK Guanosine monopho 89.3 0.3 6.4E-06 47.9 3.0 22 515-536 2-23 (137)
454 PRK04040 adenylate kinase; Pro 89.2 0.37 8.1E-06 49.9 3.8 24 513-536 3-26 (188)
455 cd00267 ABC_ATPase ABC (ATP-bi 89.2 1.3 2.8E-05 43.9 7.6 97 514-616 27-125 (157)
456 TIGR00174 miaA tRNA isopenteny 89.1 0.36 7.9E-06 53.4 3.8 31 515-548 2-32 (287)
457 cd03216 ABC_Carb_Monos_I This 89.1 0.86 1.9E-05 45.8 6.2 98 514-616 28-127 (163)
458 TIGR00376 DNA helicase, putati 89.0 1.1 2.5E-05 54.9 8.3 31 514-544 175-205 (637)
459 TIGR00416 sms DNA repair prote 88.9 0.71 1.5E-05 54.4 6.3 83 514-602 96-182 (454)
460 COG0572 Udk Uridine kinase [Nu 88.9 0.53 1.1E-05 50.0 4.7 36 512-547 8-43 (218)
461 PF13521 AAA_28: AAA domain; P 88.8 0.34 7.3E-06 48.4 3.1 21 515-535 2-22 (163)
462 PRK04182 cytidylate kinase; Pr 88.8 0.36 7.9E-06 48.4 3.3 23 514-536 2-24 (180)
463 COG4962 CpaF Flp pilus assembl 88.7 1.7 3.6E-05 49.2 8.6 96 514-618 175-273 (355)
464 cd01983 Fer4_NifH The Fer4_Nif 88.7 0.56 1.2E-05 41.2 4.2 33 515-547 2-34 (99)
465 cd03282 ABC_MSH4_euk MutS4 hom 88.7 1.5 3.3E-05 46.0 8.0 24 514-537 31-54 (204)
466 PF12846 AAA_10: AAA-like doma 88.6 0.47 1E-05 51.2 4.3 36 514-549 3-38 (304)
467 PRK14737 gmk guanylate kinase; 88.5 0.4 8.8E-06 49.6 3.5 24 513-536 5-28 (186)
468 PTZ00301 uridine kinase; Provi 88.5 0.51 1.1E-05 49.9 4.3 24 513-536 4-27 (210)
469 PF01057 Parvo_NS1: Parvovirus 88.4 1.4 3E-05 48.5 7.6 92 514-640 115-208 (271)
470 TIGR03878 thermo_KaiC_2 KaiC d 88.2 0.6 1.3E-05 50.8 4.8 37 513-549 37-73 (259)
471 cd00544 CobU Adenosylcobinamid 88.2 0.75 1.6E-05 47.0 5.2 32 515-549 2-33 (169)
472 TIGR02173 cyt_kin_arch cytidyl 88.2 0.42 9.1E-06 47.6 3.3 23 514-536 2-24 (171)
473 PRK12338 hypothetical protein; 88.2 0.44 9.6E-06 53.5 3.7 25 512-536 4-28 (319)
474 PRK12337 2-phosphoglycerate ki 88.1 1.1 2.4E-05 52.6 7.1 36 511-548 254-289 (475)
475 cd02024 NRK1 Nicotinamide ribo 87.9 0.51 1.1E-05 49.1 3.7 22 515-536 2-23 (187)
476 PRK09825 idnK D-gluconate kina 87.8 0.46 1E-05 48.7 3.4 23 514-536 5-27 (176)
477 COG0802 Predicted ATPase or ki 87.8 1.6 3.5E-05 43.8 7.0 43 484-537 8-50 (149)
478 PF03029 ATP_bind_1: Conserved 87.8 0.53 1.1E-05 50.7 4.0 33 517-549 1-33 (238)
479 cd03227 ABC_Class2 ABC-type Cl 87.8 2.2 4.8E-05 42.8 8.2 96 514-616 23-126 (162)
480 PRK13973 thymidylate kinase; P 87.7 0.58 1.3E-05 49.2 4.2 33 514-546 5-37 (213)
481 PRK12339 2-phosphoglycerate ki 87.7 0.52 1.1E-05 49.3 3.7 24 513-536 4-27 (197)
482 PRK14526 adenylate kinase; Pro 87.5 0.47 1E-05 50.2 3.3 23 514-536 2-24 (211)
483 PLN02459 probable adenylate ki 87.5 0.75 1.6E-05 50.3 4.9 32 513-549 30-61 (261)
484 COG0630 VirB11 Type IV secreto 87.3 5.8 0.00013 44.5 12.0 95 514-618 145-242 (312)
485 PRK14529 adenylate kinase; Pro 87.2 0.5 1.1E-05 50.5 3.3 23 514-536 2-24 (223)
486 cd03280 ABC_MutS2 MutS2 homolo 87.2 1.7 3.6E-05 45.2 7.2 21 514-534 30-50 (200)
487 KOG3354 Gluconate kinase [Carb 87.2 0.86 1.9E-05 46.0 4.7 25 512-536 12-36 (191)
488 cd02029 PRK_like Phosphoribulo 87.2 1.5 3.3E-05 48.1 7.0 35 515-549 2-36 (277)
489 PLN02796 D-glycerate 3-kinase 87.1 1.8 3.9E-05 49.2 7.8 27 511-537 99-125 (347)
490 PRK13768 GTPase; Provisional 87.1 0.75 1.6E-05 49.9 4.7 37 514-550 4-40 (253)
491 PF02367 UPF0079: Uncharacteri 87.0 0.68 1.5E-05 45.0 3.8 23 514-536 17-39 (123)
492 PRK06731 flhF flagellar biosyn 86.9 2.5 5.4E-05 46.5 8.6 98 514-615 77-181 (270)
493 KOG0922 DEAH-box RNA helicase 86.9 2.6 5.7E-05 51.0 9.2 28 514-541 68-96 (674)
494 PRK05800 cobU adenosylcobinami 86.7 1.6 3.4E-05 44.7 6.5 31 514-547 3-33 (170)
495 PRK12727 flagellar biosynthesi 86.7 2 4.3E-05 51.5 8.1 36 514-549 352-389 (559)
496 TIGR03881 KaiC_arch_4 KaiC dom 86.6 0.93 2E-05 47.8 5.0 36 513-548 21-56 (229)
497 TIGR00991 3a0901s02IAP34 GTP-b 86.6 7.6 0.00016 43.7 12.2 22 513-534 39-60 (313)
498 KOG1802 RNA helicase nonsense 86.5 0.89 1.9E-05 54.7 5.1 106 514-647 427-564 (935)
499 PRK10646 ADP-binding protein; 86.5 1.4 3E-05 44.5 5.9 43 484-537 11-53 (153)
500 PF13337 Lon_2: Putative ATP-d 86.4 0.84 1.8E-05 53.3 4.8 48 591-640 260-310 (457)
No 1
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-74 Score=686.55 Aligned_cols=613 Identities=25% Similarity=0.321 Sum_probs=437.4
Q ss_pred CcCcccccCCcEEEEechhhcccccCcccchhhhhhHHHHHHHHHhcCCCcEEEEeccceeeecCCCCCCCCCCCCCCCC
Q 002758 20 GFGLSVQLSGLDIISIEAVVSKFVSGECEKGSVKMKFEEVDVSIKRNLGPGVVVNYGDLKVFVNNNKCNNDDDDDNKSGN 99 (884)
Q Consensus 20 ~~~~p~~l~~~~vi~l~~e~~~~~~~~~~~~~v~~k~~eL~~~v~~~~g~Gvvl~~GDLkw~ve~~~~~~~~~~~~~~~~ 99 (884)
-+.+|.-|.+.+++.|. +.....+.+.++|+|.|+++|...|++ +|+||||++|||+|+|+....
T Consensus 234 ~G~vp~~l~~~~l~~l~--~g~l~aGa~~rge~E~rlk~l~k~v~~-~~~gvILfigelh~lvg~g~~------------ 298 (898)
T KOG1051|consen 234 TGDVPETLKDKKLIALD--FGSLVAGAKRRGEFEERLKELLKEVES-GGGGVILFLGELHWLVGSGSN------------ 298 (898)
T ss_pred cCCCCccccccceEEEE--hhhcccCcccchHHHHHHHHHHHHHhc-CCCcEEEEecceeeeecCCCc------------
Confidence 35789866666666666 555667778889999999999999998 588999999999999997753
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCeEEEEEehhhHHHHHhccccCCCccccCccceeeeccCCCCCCCccccCCccccccc
Q 002758 100 NETSDAVSYVVAQLTRLLQLHGGRVWLIGAAATYETYLKFVSRFSSIEKDWDLLLLPITSLRTSSLADSCHRSSLMESFV 179 (884)
Q Consensus 100 ~~~~~~~~~~V~El~rLl~~~g~rvWl~G~aaty~tYmkc~~~~PslE~~WdLq~v~I~s~~~~~~~~~~~~ssl~~s~~ 179 (884)
|+ +-.+|.-|.-+|.. | .+|+||+ +||+||+||+.++|+||.+|+||+|+|||... +.+.++..+.+ .++
T Consensus 299 ---~~-~~d~~nlLkp~L~r-g-~l~~IGa-tT~e~Y~k~iekdPalErrw~l~~v~~pS~~~--~~~iL~~l~~~-~e~ 368 (898)
T KOG1051|consen 299 ---YG-AIDAANLLKPLLAR-G-GLWCIGA-TTLETYRKCIEKDPALERRWQLVLVPIPSVEN--LSLILPGLSER-YEV 368 (898)
T ss_pred ---ch-HHHHHHhhHHHHhc-C-CeEEEec-ccHHHHHHHHhhCcchhhCcceeEeccCcccc--hhhhhhhhhhh-hcc
Confidence 33 33333334444442 3 4999998 69999999999999999999999999999763 33566665555 688
Q ss_pred cCCCCCCCCCCCCCCCC-CCCCCCccchHhhhhHHHHHHHhhcCCCCCccccccCCCCCcccccccCCCcccccccccch
Q 002758 180 PFGGFFPTPSEFKNPLG-GLCQNVSRCQQCSEKCEQEIIASSKGGFTASIADQCQSVLPSWLQMAEPDSNKALDLKTKED 258 (884)
Q Consensus 180 p~~~~~s~~~~~~~~~~-~~~~~~~~C~~C~~~~e~e~~~~~~~~~~~s~~~~~~~~LP~WLq~~~~~~~~~~~~~~kdd 258 (884)
++|.+++.......... ..+....||++|+.+|++|+++..+. +...||+|||+++....+ .+++
T Consensus 369 ~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~---------~~~~lP~wL~~~~~~~~~-----~~~e 434 (898)
T KOG1051|consen 369 HHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKS---------QAESLPPWLQNLERVDIK-----LQDE 434 (898)
T ss_pred ccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhh---------hhhhCCHHHHhhhhhhhh-----hHHH
Confidence 89999987766544433 34677899999999999999988653 256799999999743321 1222
Q ss_pred hhhhhhHHhhhhHHhhhccccccccccCCCCCccccccccccccccCCCCCCCCCCccCCCccccccCCCCCCCcccccc
Q 002758 259 GLALRSKITKKWDDICQSLHRTQSLQVGSQFPTVVGFQFLQDKKENANNSGSSTNASVNGGSYVNVYSGIPIDSENVSAS 338 (884)
Q Consensus 259 ~~~~~~~~~kkW~~~C~~lh~~~~~~~~~~~~~~~g~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (884)
.. .++|||| +++|++....++ ..+..... +.+-+|. +..
T Consensus 435 ~~----~L~kk~d---~~~h~r~~~~~~------~~~~~~~~-----~l~~~~~---------~~~-------------- 473 (898)
T KOG1051|consen 435 IS----ELQKKWN---QALHKRPSLESL------APSKPTQQ-----PLSASVD---------SER-------------- 473 (898)
T ss_pred HH----HHHHhhh---hhhccccccccc------cccccccc-----cchhhhc---------cch--------------
Confidence 22 3599999 889987542321 10000000 0000010 000
Q ss_pred CccccccccccccccchhhhhhhcccccccCCCCCCCCccCCCCC-CCCCCCCCCCCCcceeeeccCCcccCCCCCCCCC
Q 002758 339 RSVFPFHTVSGAKNDSLLSKLREKSSNADLDSGGSRSPCCLSNSS-VDDGSRKSPTPVTSVTTDLGLGLLGIGSAPTSNE 417 (884)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~sp~~~~~VttdL~Lg~~~~~~~~~~~~ 417 (884)
++.++... .+.++...+ ....+ .+ ...++.|||.+|..|+...
T Consensus 474 -------------------s~~~~l~~---------~~~~~~~~~~~~k~~--r~-~d~~~~~~l~~~~~p~~~~----- 517 (898)
T KOG1051|consen 474 -------------------SVIEELKL---------KKNSLDRNSLLAKAH--RP-NDYTRETDLRYGRIPDELS----- 517 (898)
T ss_pred -------------------hHHhhhcc---------ccCCcccchhhhccc--CC-CCcchhhhccccccchhhh-----
Confidence 00000000 000000000 00111 11 3345789999999441110
Q ss_pred CCCCCcccccccccccccCccCccCCCcccccccCCC-CCC--CCCccccchHhHHHHHHHhhccCccchHHHHHHHHHH
Q 002758 418 PKEPISKDLTERSQELSGCCSATVNGSISNQLAQSSS-SSC--PDLNCQFDLSNWKTLFRALTEKIDWQDEAISVISQTI 494 (884)
Q Consensus 418 ~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~s~~-~~~--~~~~~~~d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI 494 (884)
.+ +.++.+ ++..++.+.+ +.+ .++..+.++++|+.|++.|.++|+||++|+.+|+.+|
T Consensus 518 ~~------------------~~~~~~-~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI 578 (898)
T KOG1051|consen 518 EK------------------SNDNQG-GESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAI 578 (898)
T ss_pred hh------------------cccccC-CccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 11 111111 2222233221 111 2455666889999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcc--cccccccccc
Q 002758 495 AQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY--HQVVGGDSVQ 572 (884)
Q Consensus 495 ~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~--p~gy~G~~~g 572 (884)
.+++.|+.++ +.++||+|.||+|+|||+||++||+.+||+++.||+|||++|.. +++++ ||||+|+.++
T Consensus 579 ~~sr~gl~~~-----~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e----vskligsp~gyvG~e~g 649 (898)
T KOG1051|consen 579 RRSRAGLKDP-----NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE----VSKLIGSPPGYVGKEEG 649 (898)
T ss_pred HhhhcccCCC-----CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh----hhhccCCCcccccchhH
Confidence 9999999877 34669999999999999999999999999999999999997642 66776 7888888776
Q ss_pred ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCccccccccccc
Q 002758 573 FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILPSEMK 652 (884)
Q Consensus 573 ~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~ 652 (884)
++|+++++++|++|||||||||||+.+++.|+|+||+|+++|++||+|+|+|+|||||+|.++..+.-
T Consensus 650 -------g~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~----- 717 (898)
T KOG1051|consen 650 -------GQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIAN----- 717 (898)
T ss_pred -------HHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhc-----
Confidence 89999999999999999999999999999999999999999999999999999999999998764320
Q ss_pred cCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCchhHHHHhhcCCCCcc
Q 002758 653 DCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRN 732 (884)
Q Consensus 653 ~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~ 732 (884)
... .+++++ ...+ + +. .+....+++.....
T Consensus 718 ~~~-~~~~l~------------~~~~------------------~------~~-----------~~~~~k~~v~~~~~-- 747 (898)
T KOG1051|consen 718 DAS-LEEKLL------------DMDE------------------K------RG-----------SYRLKKVQVSDAVR-- 747 (898)
T ss_pred ccc-cccccc------------cchh------------------h------hh-----------hhhhhhhhhhhhhh--
Confidence 111 121111 0000 0 00 00000011100000
Q ss_pred cCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCH
Q 002758 733 LDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDR 812 (884)
Q Consensus 733 lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~Idd 812 (884)
-.+...|++||+||+|.+++|+|++.+++.+|+...+.+..+++.+.++.+.+.+
T Consensus 748 -------------------------~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~~~~~v~~ 802 (898)
T KOG1051|consen 748 -------------------------IYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEERELLLLVTD 802 (898)
T ss_pred -------------------------cccccccChHHhcccceeeeecccchhhHhhhhhhHHHHHHHHhhhhHHHHHHHH
Confidence 0011589999999999999999999999999999999999888877789999999
Q ss_pred HHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeec
Q 002758 813 KVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKLVACE 864 (884)
Q Consensus 813 eAle~La~~~~~~~-gaR~le~wIE~vl~~~L~~~~~~~~~~~~~~v~L~~~~ 864 (884)
.+.+.++..+|... |||+|+++|++.|...|..... ..+....++++.+-.
T Consensus 803 ~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l-~ei~~~~~~~i~~~~ 854 (898)
T KOG1051|consen 803 RVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL-GEVEDGLTERILVAD 854 (898)
T ss_pred HHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhe-eeecCCceEEEEecc
Confidence 99999999999988 9999999999999999999887 666667888886644
No 2
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-51 Score=484.86 Aligned_cols=299 Identities=21% Similarity=0.285 Sum_probs=264.6
Q ss_pred ccccchHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCC
Q 002758 461 NCQFDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK 540 (884)
Q Consensus 461 ~~~~d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~ 540 (884)
..+.+.+.+..|++.|.++|+||++||.+|+++|++.|+|+.++++|.+ +|||.||+|||||+||++||+.|||++
T Consensus 474 l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPig----sFlF~GPTGVGKTELAkaLA~~Lfg~e 549 (786)
T COG0542 474 LLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIG----SFLFLGPTGVGKTELAKALAEALFGDE 549 (786)
T ss_pred hchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCce----EEEeeCCCcccHHHHHHHHHHHhcCCC
Confidence 3445888999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cceEEeccCCCCCCCCCCCCcc--ccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 541 ENFICADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 541 ~~fi~id~s~~~~e~~~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
..+++||||+|.. .|.+++|+ ||||+||++| +.|+++++++|++||||||||||||+|++.|+|+|++|+
T Consensus 550 ~aliR~DMSEy~E-kHsVSrLIGaPPGYVGyeeG-------G~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGr 621 (786)
T COG0542 550 QALIRIDMSEYME-KHSVSRLIGAPPGYVGYEEG-------GQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGR 621 (786)
T ss_pred ccceeechHHHHH-HHHHHHHhCCCCCCceeccc-------cchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCe
Confidence 9999999998764 68889999 9999999998 899999999999999999999999999999999999999
Q ss_pred eeCCCCeEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhh
Q 002758 619 LPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQ 698 (884)
Q Consensus 619 l~ds~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p 698 (884)
++|+.||+|+|+|+|||||||+|++.+.- ...+ + + .+
T Consensus 622 LTD~~Gr~VdFrNtiIImTSN~Gs~~i~~-----~~~~-~--------------------~-----------------~~ 658 (786)
T COG0542 622 LTDGQGRTVDFRNTIIIMTSNAGSEEILR-----DADG-D--------------------D-----------------FA 658 (786)
T ss_pred eecCCCCEEecceeEEEEecccchHHHHh-----hccc-c--------------------c-----------------cc
Confidence 99999999999999999999998764310 0000 0 0 00
Q ss_pred hhhhhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccceeeec
Q 002758 699 KLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAF 778 (884)
Q Consensus 699 ~~~~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~IVvF 778 (884)
. ...+... .+.+....|+|||+||||.||+|
T Consensus 659 ---~---------------~~~~~~~-------------------------------v~~~l~~~F~PEFLNRid~II~F 689 (786)
T COG0542 659 ---D---------------KEALKEA-------------------------------VMEELKKHFRPEFLNRIDEIIPF 689 (786)
T ss_pred ---h---------------hhhHHHH-------------------------------HHHHHHhhCCHHHHhhcccEEec
Confidence 0 0000110 11355679999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHhcCCCCCcE
Q 002758 779 KAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSI 857 (884)
Q Consensus 779 kPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~-gaR~le~wIE~vl~~~L~~~~~~~~~~~~~~ 857 (884)
+||+.+++.+|+..+|.++..++..+++.|+++++|+++|+..+|.+. |||+|++.|++.+.+.|++....+.......
T Consensus 690 ~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~g~~~~~~~ 769 (786)
T COG0542 690 NPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDGGT 769 (786)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHhcccCCCcE
Confidence 999999999999999999999999889999999999999999999988 9999999999999999999999987776777
Q ss_pred EEEEee
Q 002758 858 VKLVAC 863 (884)
Q Consensus 858 v~L~~~ 863 (884)
|++...
T Consensus 770 v~v~~~ 775 (786)
T COG0542 770 VKVDVD 775 (786)
T ss_pred EEEEec
Confidence 877444
No 3
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=6.6e-40 Score=401.88 Aligned_cols=306 Identities=19% Similarity=0.285 Sum_probs=256.7
Q ss_pred cchHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcce
Q 002758 464 FDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 543 (884)
Q Consensus 464 ~d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~f 543 (884)
-+.+.+..|++.|.++|+||++|++.|+.+|.+++.|+.++++|.+ ++||+||+|||||++|++||+.+|++..++
T Consensus 495 ~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~----~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~ 570 (821)
T CHL00095 495 SESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIA----SFLFSGPTGVGKTELTKALASYFFGSEDAM 570 (821)
T ss_pred hHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCce----EEEEECCCCCcHHHHHHHHHHHhcCCccce
Confidence 3677899999999999999999999999999999999998888877 899999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCCCCcc--ccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeC
Q 002758 544 ICADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 544 i~id~s~~~~e~~~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~d 621 (884)
+++||+.+.. .+..+.++ ||||+||+++ +.|+++++.+|++|||||||||||+++++.|+++||+|+++|
T Consensus 571 ~~~d~s~~~~-~~~~~~l~g~~~gyvg~~~~-------~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d 642 (821)
T CHL00095 571 IRLDMSEYME-KHTVSKLIGSPPGYVGYNEG-------GQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTD 642 (821)
T ss_pred EEEEchhccc-cccHHHhcCCCCcccCcCcc-------chHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceec
Confidence 9999997653 45566676 7899998876 689999999999999999999999999999999999999999
Q ss_pred CCCeEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhh
Q 002758 622 SYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLL 701 (884)
Q Consensus 622 s~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~ 701 (884)
+.|++|+|+|+|||||||.|++.+... ....+|..+.
T Consensus 643 ~~g~~v~~~~~i~I~Tsn~g~~~i~~~--~~~~gf~~~~----------------------------------------- 679 (821)
T CHL00095 643 SKGRTIDFKNTLIIMTSNLGSKVIETN--SGGLGFELSE----------------------------------------- 679 (821)
T ss_pred CCCcEEecCceEEEEeCCcchHHHHhh--ccccCCcccc-----------------------------------------
Confidence 999999999999999999987643100 0122232100
Q ss_pred hhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccceeeecCCC
Q 002758 702 NKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAF 781 (884)
Q Consensus 702 ~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~IVvFkPL 781 (884)
.+. ....+..+.+.+ ..+....|.|||+||||.||+|+||
T Consensus 680 --~~~-------~~~~~~~~~~~~-------------------------------~~~~~~~f~peflnRid~ii~F~pL 719 (821)
T CHL00095 680 --NQL-------SEKQYKRLSNLV-------------------------------NEELKQFFRPEFLNRLDEIIVFRQL 719 (821)
T ss_pred --ccc-------ccccHHHHHHHH-------------------------------HHHHHHhcCHHHhccCCeEEEeCCC
Confidence 000 000011111111 0234568999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Q 002758 782 NFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKL 860 (884)
Q Consensus 782 d~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~-gaR~le~wIE~vl~~~L~~~~~~~~~~~~~~v~L 860 (884)
+.+++.+|+.+.+.+..+++..+++.|.++++++++|+..+|.+. |||+|+++|++.+.+.|++....+...++..|++
T Consensus 720 ~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~~~~~~g~~v~~ 799 (821)
T CHL00095 720 TKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDIIIV 799 (821)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHhCccCCCCEEEE
Confidence 999999999999999988887789999999999999999999877 9999999999999999999999988877788887
Q ss_pred Eeec
Q 002758 861 VACE 864 (884)
Q Consensus 861 ~~~~ 864 (884)
....
T Consensus 800 ~~~~ 803 (821)
T CHL00095 800 DVND 803 (821)
T ss_pred EEeC
Confidence 5433
No 4
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=5.4e-39 Score=392.97 Aligned_cols=291 Identities=22% Similarity=0.322 Sum_probs=247.8
Q ss_pred chHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceE
Q 002758 465 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 544 (884)
Q Consensus 465 d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi 544 (884)
+.+++..|++.|.++|+||++|+..|+.+|.++++|+.++++|.+ +|||+||+|||||++|++||+.+|++...|+
T Consensus 553 e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~----~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~ 628 (852)
T TIGR03345 553 EIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLG----VFLLVGPSGVGKTETALALAELLYGGEQNLI 628 (852)
T ss_pred HHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCce----EEEEECCCCCCHHHHHHHHHHHHhCCCcceE
Confidence 677899999999999999999999999999999999999988888 9999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCCCcc--ccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCC
Q 002758 545 CADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS 622 (884)
Q Consensus 545 ~id~s~~~~e~~~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds 622 (884)
++||+.|.. .+..++|+ ||||+||.++ +.|+++++++|++|||||||||||+.+++.|+++|++|+++|+
T Consensus 629 ~~dmse~~~-~~~~~~l~g~~~gyvg~~~~-------g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~ 700 (852)
T TIGR03345 629 TINMSEFQE-AHTVSRLKGSPPGYVGYGEG-------GVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG 700 (852)
T ss_pred EEeHHHhhh-hhhhccccCCCCCccccccc-------chHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecC
Confidence 999997753 46777888 8999999877 6899999999999999999999999999999999999999999
Q ss_pred CCeEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhh
Q 002758 623 YGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLN 702 (884)
Q Consensus 623 ~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~ 702 (884)
.|++|+|+|+|||||||+|.+...- ...+.
T Consensus 701 ~Gr~vd~~n~iiI~TSNlg~~~~~~-----------------------~~~~~--------------------------- 730 (852)
T TIGR03345 701 EGREIDFKNTVILLTSNAGSDLIMA-----------------------LCADP--------------------------- 730 (852)
T ss_pred CCcEEeccccEEEEeCCCchHHHHH-----------------------hccCc---------------------------
Confidence 9999999999999999997653210 00000
Q ss_pred hhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccceeeecCCCC
Q 002758 703 KRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFN 782 (884)
Q Consensus 703 KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~IVvFkPLd 782 (884)
++. .....+.+.+ ..+....|.|||++|+| +|+|+||+
T Consensus 731 ~~~----------~~~~~~~~~~-------------------------------~~~~~~~f~PEflnRi~-iI~F~pLs 768 (852)
T TIGR03345 731 ETA----------PDPEALLEAL-------------------------------RPELLKVFKPAFLGRMT-VIPYLPLD 768 (852)
T ss_pred ccC----------cchHHHHHHH-------------------------------HHHHHHhccHHHhccee-EEEeCCCC
Confidence 000 0000111111 12345689999999997 99999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC-CceEEeCHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEE
Q 002758 783 FDALAEKILKDINASFRKTVGS-ECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVK 859 (884)
Q Consensus 783 ~e~L~eIi~~~L~~~~~~l~g~-gi~L~IddeAle~La~~~~~~~-gaR~le~wIE~vl~~~L~~~~~~~~~~~~~~v~ 859 (884)
.+++.+|+.+.+.+...++..+ ++.++++++|+++|+..+|.+. |+|+|+++|++.+.+.|++........+....+
T Consensus 769 ~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l~~~~~~~~~~~ 847 (852)
T TIGR03345 769 DDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILERLAAGEPIER 847 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHhChhcCCCeeE
Confidence 9999999999999988877555 8999999999999999999877 999999999999999999988887665444433
No 5
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-38 Score=379.09 Aligned_cols=291 Identities=19% Similarity=0.221 Sum_probs=247.2
Q ss_pred cchHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcce
Q 002758 464 FDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 543 (884)
Q Consensus 464 ~d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~f 543 (884)
-+.+.+..|.+.|.++|+||++|+..|+.+|...+.|+..+++|.+ ++||+||+|||||++|++||+.+ ..+|
T Consensus 444 ~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~----~~Lf~GP~GvGKT~lAk~LA~~l---~~~~ 516 (758)
T PRK11034 444 SDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVG----SFLFAGPTGVGKTEVTVQLSKAL---GIEL 516 (758)
T ss_pred hHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcc----eEEEECCCCCCHHHHHHHHHHHh---CCCc
Confidence 3677899999999999999999999999999999999988888887 89999999999999999999998 3689
Q ss_pred EEeccCCCCCCCCCCCCcc--ccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeC
Q 002758 544 ICADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 544 i~id~s~~~~e~~~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~d 621 (884)
+++||+.+.. .+..+.++ |+||+|++.+ +.++++++++|++|||||||||||+++|+.|+++|++|+++|
T Consensus 517 i~id~se~~~-~~~~~~LiG~~~gyvg~~~~-------g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd 588 (758)
T PRK11034 517 LRFDMSEYME-RHTVSRLIGAPPGYVGFDQG-------GLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTD 588 (758)
T ss_pred EEeechhhcc-cccHHHHcCCCCCccccccc-------chHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeec
Confidence 9999997653 34556676 7888888765 689999999999999999999999999999999999999999
Q ss_pred CCCeEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhh
Q 002758 622 SYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLL 701 (884)
Q Consensus 622 s~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~ 701 (884)
..|++++|+|+|||+|||.|.+... . ...+|.. .
T Consensus 589 ~~g~~vd~rn~iiI~TsN~g~~~~~--~--~~~g~~~-------------------~----------------------- 622 (758)
T PRK11034 589 NNGRKADFRNVVLVMTTNAGVRETE--R--KSIGLIH-------------------Q----------------------- 622 (758)
T ss_pred CCCceecCCCcEEEEeCCcCHHHHh--h--cccCccc-------------------c-----------------------
Confidence 9999999999999999998654310 0 0011100 0
Q ss_pred hhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccceeeecCCC
Q 002758 702 NKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAF 781 (884)
Q Consensus 702 ~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~IVvFkPL 781 (884)
+.. . ..+.+....|.|||++|||.+|+|+||
T Consensus 623 -~~~-------------~-----------------------------------~~~~~~~~~f~pefl~Rid~ii~f~~L 653 (758)
T PRK11034 623 -DNS-------------T-----------------------------------DAMEEIKKIFTPEFRNRLDNIIWFDHL 653 (758)
T ss_pred -hhh-------------H-----------------------------------HHHHHHHHhcCHHHHccCCEEEEcCCC
Confidence 000 0 001234558999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Q 002758 782 NFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKL 860 (884)
Q Consensus 782 d~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~-gaR~le~wIE~vl~~~L~~~~~~~~~~~~~~v~L 860 (884)
+.+++.+|+...|.+..+++..+++.|.++++++++|+..+|.+. |||+|++.|++.+.+.|++....+....+..+++
T Consensus 654 ~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~~~~~~~~~~~v 733 (758)
T PRK11034 654 STDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTV 733 (758)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHhCcccCCCEEEE
Confidence 999999999999999888887789999999999999999999987 9999999999999999999988887766677777
Q ss_pred Eeec
Q 002758 861 VACE 864 (884)
Q Consensus 861 ~~~~ 864 (884)
...+
T Consensus 734 ~~~~ 737 (758)
T PRK11034 734 ALDK 737 (758)
T ss_pred EEEC
Confidence 5444
No 6
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1.4e-37 Score=377.45 Aligned_cols=286 Identities=21% Similarity=0.252 Sum_probs=244.7
Q ss_pred chHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceE
Q 002758 465 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 544 (884)
Q Consensus 465 d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi 544 (884)
+.+.+..|.+.|.++|+||++|++.|+.++...+.|+..+++|.+ ++||+||+|||||++|++||+.+ ..+|+
T Consensus 441 ~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~----~~lf~Gp~GvGKT~lA~~la~~l---~~~~~ 513 (731)
T TIGR02639 441 DREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVG----SFLFTGPTGVGKTELAKQLAEAL---GVHLE 513 (731)
T ss_pred HHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCce----eEEEECCCCccHHHHHHHHHHHh---cCCeE
Confidence 677899999999999999999999999999999999988888887 89999999999999999999998 35799
Q ss_pred EeccCCCCCCCCCCCCcc--ccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCC
Q 002758 545 CADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS 622 (884)
Q Consensus 545 ~id~s~~~~e~~~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds 622 (884)
++||+.+.. .+..+.++ |++|+|++++ +.++++++.+|++|||||||||||+++++.|+++|++|+++|.
T Consensus 514 ~~d~se~~~-~~~~~~lig~~~gyvg~~~~-------~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~ 585 (731)
T TIGR02639 514 RFDMSEYME-KHTVSRLIGAPPGYVGFEQG-------GLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDN 585 (731)
T ss_pred EEeCchhhh-cccHHHHhcCCCCCcccchh-------hHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecC
Confidence 999997653 35556676 7899998776 7899999999999999999999999999999999999999999
Q ss_pred CCeEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhh
Q 002758 623 YGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLN 702 (884)
Q Consensus 623 ~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~ 702 (884)
.|++++|+|+|||+|||.|++.+. . ...+|..+.
T Consensus 586 ~g~~vd~~~~iii~Tsn~g~~~~~--~--~~~~f~~~~------------------------------------------ 619 (731)
T TIGR02639 586 NGRKADFRNVILIMTSNAGASEMS--K--PPIGFGSEN------------------------------------------ 619 (731)
T ss_pred CCcccCCCCCEEEECCCcchhhhh--h--ccCCcchhh------------------------------------------
Confidence 999999999999999999765321 0 011221100
Q ss_pred hhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccceeeecCCCC
Q 002758 703 KRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFN 782 (884)
Q Consensus 703 KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~IVvFkPLd 782 (884)
. .+ . ...+....|.|||++|||.+|+|+||+
T Consensus 620 -~--------------~~---~-------------------------------~~~~~~~~f~pef~~Rid~Vi~F~pLs 650 (731)
T TIGR02639 620 -V--------------ES---K-------------------------------SDKAIKKLFSPEFRNRLDAIIHFNPLS 650 (731)
T ss_pred -h--------------HH---H-------------------------------HHHHHHhhcChHHHhcCCeEEEcCCCC
Confidence 0 00 0 002334589999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Q 002758 783 FDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKL 860 (884)
Q Consensus 783 ~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~-gaR~le~wIE~vl~~~L~~~~~~~~~~~~~~v~L 860 (884)
.+++.+|+.+.+.+..+++..+++.|.++++++++|+..+|.+. |||+|+++|++.+.+.|++....+....+..+++
T Consensus 651 ~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~~~~~~~~~~~~ 729 (731)
T TIGR02639 651 EEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGSVKV 729 (731)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHhCcCCCCCEEEE
Confidence 99999999999999888886789999999999999999999887 9999999999999999999998887665555544
No 7
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=2.1e-36 Score=372.05 Aligned_cols=291 Identities=20% Similarity=0.265 Sum_probs=248.9
Q ss_pred cchHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcce
Q 002758 464 FDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 543 (884)
Q Consensus 464 ~d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~f 543 (884)
.+.+.+..|++.|.++|+||++|+..|+.+|.+.++|+.++++|.+ ++||.||+|||||++|++||+.+|++..+|
T Consensus 551 ~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~----~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~ 626 (852)
T TIGR03346 551 GEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIG----SFLFLGPTGVGKTELAKALAEFLFDDEDAM 626 (852)
T ss_pred HHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCe----EEEEEcCCCCCHHHHHHHHHHHhcCCCCcE
Confidence 4778899999999999999999999999999999999988888776 899999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCCCCcc--ccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeC
Q 002758 544 ICADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 544 i~id~s~~~~e~~~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~d 621 (884)
+++||+.+.. .+....++ ||+|+||.++ +.|+++++.+|++|||||||||||+.+|+.|+++|++|+++|
T Consensus 627 i~~d~s~~~~-~~~~~~l~g~~~g~~g~~~~-------g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d 698 (852)
T TIGR03346 627 VRIDMSEYME-KHSVARLIGAPPGYVGYEEG-------GQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTD 698 (852)
T ss_pred EEEechhhcc-cchHHHhcCCCCCccCcccc-------cHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceec
Confidence 9999997653 34455666 8899999876 689999999999999999999999999999999999999999
Q ss_pred CCCeEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhh
Q 002758 622 SYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLL 701 (884)
Q Consensus 622 s~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~ 701 (884)
+.|+.++|+|+|||||||.|++.+.-. +. + .
T Consensus 699 ~~g~~vd~rn~iiI~TSn~g~~~~~~~-------~~----------------~----------------------~---- 729 (852)
T TIGR03346 699 GQGRTVDFRNTVIIMTSNLGSQFIQEL-------AG----------------G----------------------D---- 729 (852)
T ss_pred CCCeEEecCCcEEEEeCCcchHhHhhh-------cc----------------c----------------------c----
Confidence 999999999999999999976532100 00 0 0
Q ss_pred hhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccceeeecCCC
Q 002758 702 NKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAF 781 (884)
Q Consensus 702 ~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~IVvFkPL 781 (884)
.+..+...+ +......|+|||++|||.+|+|+||
T Consensus 730 ---------------~~~~~~~~~-------------------------------~~~~~~~F~pel~~Rid~IivF~PL 763 (852)
T TIGR03346 730 ---------------DYEEMREAV-------------------------------MEVLRAHFRPEFLNRIDEIVVFHPL 763 (852)
T ss_pred ---------------cHHHHHHHH-------------------------------HHHHHhhcCHHHhcCcCeEEecCCc
Confidence 000000000 0123458999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Q 002758 782 NFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKL 860 (884)
Q Consensus 782 d~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~-gaR~le~wIE~vl~~~L~~~~~~~~~~~~~~v~L 860 (884)
+.+++.+|+.+.+....+++..+++.+.++++++++|+.++|.+. |+|+|+++|++.+.+.|++....++...+..|++
T Consensus 764 ~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~~~~ 843 (852)
T TIGR03346 764 GREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVADGDTIVV 843 (852)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 999999999999998877776678899999999999999999876 9999999999999999999998887766667766
Q ss_pred E
Q 002758 861 V 861 (884)
Q Consensus 861 ~ 861 (884)
.
T Consensus 844 ~ 844 (852)
T TIGR03346 844 D 844 (852)
T ss_pred E
Confidence 4
No 8
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=3.1e-35 Score=360.83 Aligned_cols=292 Identities=18% Similarity=0.293 Sum_probs=247.2
Q ss_pred cchHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcce
Q 002758 464 FDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 543 (884)
Q Consensus 464 ~d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~f 543 (884)
-+.+.+..|++.|.++|+||+.|+..|..+|.++++|+.++++|.+ +++|+||+|+|||++|++||+.+|++..+|
T Consensus 554 ~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~----~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~ 629 (857)
T PRK10865 554 SEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIG----SFLFLGPTGVGKTELCKALANFMFDSDDAM 629 (857)
T ss_pred hHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCc----eEEEECCCCCCHHHHHHHHHHHhhcCCCcE
Confidence 3677899999999999999999999999999999999998888876 899999999999999999999999988899
Q ss_pred EEeccCCCCCCCCCCCCcc--ccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeC
Q 002758 544 ICADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 544 i~id~s~~~~e~~~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~d 621 (884)
+++||+.+.. .+..+.++ ||+|+|++++ +.++++++.+|++||||||||++++.+|+.|+++|++|+++|
T Consensus 630 i~id~se~~~-~~~~~~LiG~~pgy~g~~~~-------g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d 701 (857)
T PRK10865 630 VRIDMSEFME-KHSVSRLVGAPPGYVGYEEG-------GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTD 701 (857)
T ss_pred EEEEhHHhhh-hhhHHHHhCCCCcccccchh-------HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceec
Confidence 9999997643 23344566 7889988776 678999999999999999999999999999999999999999
Q ss_pred CCCeEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhh
Q 002758 622 SYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLL 701 (884)
Q Consensus 622 s~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~ 701 (884)
+.|++++|+|+|||+|||.|++... + .|.+ . .
T Consensus 702 ~~gr~vd~rn~iiI~TSN~g~~~~~-----~--~~~~-----------------~--------------------~---- 733 (857)
T PRK10865 702 GQGRTVDFRNTVVIMTSNLGSDLIQ-----E--RFGE-----------------L--------------------D---- 733 (857)
T ss_pred CCceEEeecccEEEEeCCcchHHHH-----H--hccc-----------------c--------------------c----
Confidence 9999999999999999998754321 0 0100 0 0
Q ss_pred hhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccceeeecCCC
Q 002758 702 NKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAF 781 (884)
Q Consensus 702 ~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~IVvFkPL 781 (884)
..++...+ .......|.|+|++|+|.+|+|+||
T Consensus 734 ----------------~~~~~~~~-------------------------------~~~~~~~f~PELlnRld~iivF~PL 766 (857)
T PRK10865 734 ----------------YAHMKELV-------------------------------LGVVSHNFRPEFINRIDEVVVFHPL 766 (857)
T ss_pred ----------------hHHHHHHH-------------------------------HHHHcccccHHHHHhCCeeEecCCC
Confidence 00000000 0112447999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Q 002758 782 NFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKL 860 (884)
Q Consensus 782 d~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~-gaR~le~wIE~vl~~~L~~~~~~~~~~~~~~v~L 860 (884)
+.++|.+|+...+.+...++...++.+.++++++++|+.++|.+. |||+|+++|++.+.+.|++....+....+..|++
T Consensus 767 ~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL~g~~~~~~~~~~ 846 (857)
T PRK10865 767 GEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRL 846 (857)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEE
Confidence 999999999999999877765667889999999999999999988 9999999999999999999999887776677777
Q ss_pred Ee
Q 002758 861 VA 862 (884)
Q Consensus 861 ~~ 862 (884)
..
T Consensus 847 ~~ 848 (857)
T PRK10865 847 EV 848 (857)
T ss_pred EE
Confidence 43
No 9
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.97 E-value=4.9e-29 Score=282.05 Aligned_cols=289 Identities=19% Similarity=0.233 Sum_probs=203.3
Q ss_pred hHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCC-CC---C-CCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcc
Q 002758 468 NWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDH-HG---A-SPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN 542 (884)
Q Consensus 468 ~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~-~~---p-~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~ 542 (884)
..+.|.+.|.+.|+||++|++.++.++.+++.++... .. + ......++||.||+|+|||++|++||+.+ ..+
T Consensus 67 ~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~p 143 (413)
T TIGR00382 67 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVP 143 (413)
T ss_pred CHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCC
Confidence 4789999999999999999999999998876665330 11 1 01123489999999999999999999877 457
Q ss_pred eEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHH-------hCCCeEEEEccccccCH-----------
Q 002758 543 FICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL-------KKPLSVVYLENVDKADV----------- 604 (884)
Q Consensus 543 fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~-------~~p~~VIlLDEIEKa~~----------- 604 (884)
|+.++++.. .+++|+|++.+ +.+..++. ....+|||||||||+++
T Consensus 144 f~~~da~~L----------~~~gyvG~d~e-------~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dv 206 (413)
T TIGR00382 144 FAIADATTL----------TEAGYVGEDVE-------NILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDV 206 (413)
T ss_pred eEEechhhc----------cccccccccHH-------HHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccc
Confidence 777776532 23578887643 34444443 33457999999999997
Q ss_pred ---HHHHHHHHHHhCCeeeC---CCCeEeecCceEEEEecCCCccccccccccccCCchh-HHHHHhhhhhhhhhccccc
Q 002758 605 ---HVQNSLSKAIQTGKLPD---SYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSE-EKIYRAKSRLTQILIEPAL 677 (884)
Q Consensus 605 ---~vq~~Llq~le~G~l~d---s~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fse-eki~~ak~~~l~i~i~~~~ 677 (884)
.+|+.|+++|| |.+++ ..|+.+++.++|+|+|+|++.-- +..|.. +++...+-. ...+++..
T Consensus 207 sg~~vq~~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~--------~Gaf~g~~~i~~~r~~--~~~~gf~~ 275 (413)
T TIGR00382 207 SGEGVQQALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFIC--------GGAFVGLEKIIKKRTG--KSSIGFGA 275 (413)
T ss_pred cchhHHHHHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeee--------cccccChHHHHHHHhh--hccccccc
Confidence 79999999995 98876 67899999999999999984321 223422 223221000 00111110
Q ss_pred cccccccccccccccccchhhhhhhhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCc
Q 002758 678 VNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDS 757 (884)
Q Consensus 678 ~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~ 757 (884)
.. .. ......+..+++ ..
T Consensus 276 ~~------------------------~~--------~~~~~~~~~~~~------------------------------~~ 293 (413)
T TIGR00382 276 EV------------------------KK--------KSKEKADLLRQV------------------------------EP 293 (413)
T ss_pred cc------------------------cc--------cchhhHHHHHHH------------------------------HH
Confidence 00 00 000000011100 00
Q ss_pred cc-ccccChhHHhcccceeeecCCCCHHHHHHHHHHHHHHHHh---h-hcCCCceEEeCHHHHHHHHHhccCCC-ChHHH
Q 002758 758 SE-NTKSWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASFR---K-TVGSECLLEIDRKVMEQLLAAAYLSE-SNRVI 831 (884)
Q Consensus 758 ~~-~~~~f~~efl~rID~IVvFkPLd~e~L~eIi~~~L~~~~~---~-l~g~gi~L~IddeAle~La~~~~~~~-gaR~l 831 (884)
.+ ...+|.|||+||||.|++|+||+.++|.+|+...++.+.+ + +..+++.|.++++|+++|+..+|.+. |||+|
T Consensus 294 ~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~L 373 (413)
T TIGR00382 294 EDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGL 373 (413)
T ss_pred HHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHH
Confidence 11 2346999999999999999999999999999886444333 2 33479999999999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002758 832 EDWLEKVLVRGFLDAQEK 849 (884)
Q Consensus 832 e~wIE~vl~~~L~~~~~~ 849 (884)
++.|++.+.+.+.++...
T Consensus 374 r~iie~~l~~~m~e~p~~ 391 (413)
T TIGR00382 374 RSIVEGLLLDVMFDLPSL 391 (413)
T ss_pred HHHHHHhhHHHHhhCCCC
Confidence 999999999999998654
No 10
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.96 E-value=9.9e-28 Score=272.54 Aligned_cols=297 Identities=19% Similarity=0.208 Sum_probs=200.3
Q ss_pred HhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCC---CCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcce
Q 002758 467 SNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHG---ASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 543 (884)
Q Consensus 467 e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~---p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~f 543 (884)
-..++|.+.|.+.|+||++|++.++.++..+...+....+ .......++||.||+|+|||++|++||..+ ..+|
T Consensus 60 ~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf 136 (412)
T PRK05342 60 PTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPF 136 (412)
T ss_pred CCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCc
Confidence 3578999999999999999999999998765333321110 111123489999999999999999999987 5689
Q ss_pred EEeccCCCCCCCCCCCCccccccccccccccccchHHHHHH----HHHhCCCeEEEEccccccCH--------------H
Q 002758 544 ICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAW----ELLKKPLSVVYLENVDKADV--------------H 605 (884)
Q Consensus 544 i~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~e----al~~~p~~VIlLDEIEKa~~--------------~ 605 (884)
+.+|++... +.+|+|.+.+- .+..+.. .+.+.+++||||||||++++ .
T Consensus 137 ~~id~~~l~----------~~gyvG~d~e~----~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~ 202 (412)
T PRK05342 137 AIADATTLT----------EAGYVGEDVEN----ILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEG 202 (412)
T ss_pred eecchhhcc----------cCCcccchHHH----HHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHH
Confidence 999987432 24677765430 1111111 13345679999999999976 4
Q ss_pred HHHHHHHHHhCCe--eeCCCCeEeecCceEEEEecCCCccccccccccccCCchh-HHHHHhhhhhhhhhcccccccccc
Q 002758 606 VQNSLSKAIQTGK--LPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSE-EKIYRAKSRLTQILIEPALVNRSS 682 (884)
Q Consensus 606 vq~~Llq~le~G~--l~ds~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fse-eki~~ak~~~l~i~i~~~~~~~~~ 682 (884)
+|+.|+++||.+. +++..|++.++.+.|+|+|+|+..-- +..|.. ++++..+- .+..+++....
T Consensus 203 vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~--------~Gaf~g~~~~~~~r~--~~~~~gf~~~~--- 269 (412)
T PRK05342 203 VQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFIC--------GGAFDGLEKIIKQRL--GKKGIGFGAEV--- 269 (412)
T ss_pred HHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeee--------cccccCcHHHHHHHH--hhcccCCcccc---
Confidence 9999999998543 36678899999999999999983310 123322 22221100 01122221100
Q ss_pred ccccccccccccchhhhhhhhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccc
Q 002758 683 SQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTK 762 (884)
Q Consensus 683 ~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~ 762 (884)
+.+ .+........+++. .+ .-...
T Consensus 270 --------------------~~~-------~~~~~~~~~~~~~~--------------~~---------------dL~~~ 293 (412)
T PRK05342 270 --------------------KSK-------KEKRTEGELLKQVE--------------PE---------------DLIKF 293 (412)
T ss_pred --------------------ccc-------cccchhHHHHHhcC--------------HH---------------HHHHH
Confidence 000 00000011111100 00 01233
Q ss_pred cChhHHhcccceeeecCCCCHHHHHHHHHHHHHHHH---hh-hcCCCceEEeCHHHHHHHHHhccCCC-ChHHHHHHHHH
Q 002758 763 SWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASF---RK-TVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEK 837 (884)
Q Consensus 763 ~f~~efl~rID~IVvFkPLd~e~L~eIi~~~L~~~~---~~-l~g~gi~L~IddeAle~La~~~~~~~-gaR~le~wIE~ 837 (884)
.|.|||+||||.+|+|+||+.++|.+|+...++... .+ +..+++.|+++++|+++|+..+|.+. |||+|++.|++
T Consensus 294 gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~ 373 (412)
T PRK05342 294 GLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEE 373 (412)
T ss_pred hhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHH
Confidence 689999999999999999999999999985333322 23 33479999999999999999999888 99999999999
Q ss_pred HHHHHHHHHHHh
Q 002758 838 VLVRGFLDAQEK 849 (884)
Q Consensus 838 vl~~~L~~~~~~ 849 (884)
.+.+.+.++..+
T Consensus 374 ~l~~~~~~~p~~ 385 (412)
T PRK05342 374 ILLDVMFELPSR 385 (412)
T ss_pred HhHHHHHhcccc
Confidence 999999988754
No 11
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.7e-23 Score=219.65 Aligned_cols=297 Identities=19% Similarity=0.225 Sum_probs=207.3
Q ss_pred hHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCC--CCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEE
Q 002758 468 NWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHH--GASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 545 (884)
Q Consensus 468 ~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~--~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~ 545 (884)
..+++++.|.+.|+||+.|.+.++-++..+...+.... .-.-=....+|+.||+|+|||.||+.||+.| +-||.-
T Consensus 51 tP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFai 127 (408)
T COG1219 51 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAI 127 (408)
T ss_pred ChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCCeee
Confidence 46899999999999999999999999988754332211 1010112479999999999999999999999 566655
Q ss_pred eccCCCCCCCCCCCCccccccccccccccccchHHHHHHH----HHhCCCeEEEEccccccC--------------HHHH
Q 002758 546 ADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWE----LLKKPLSVVYLENVDKAD--------------VHVQ 607 (884)
Q Consensus 546 id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~ea----l~~~p~~VIlLDEIEKa~--------------~~vq 607 (884)
-|.. .|+..||+|.++.- .+-+|..+ +.+...+||+||||||.. ..||
T Consensus 128 ADAT----------tLTEAGYVGEDVEN----illkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQ 193 (408)
T COG1219 128 ADAT----------TLTEAGYVGEDVEN----ILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQ 193 (408)
T ss_pred cccc----------chhhccccchhHHH----HHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHH
Confidence 4443 44557999877651 22233322 345567899999999975 4799
Q ss_pred HHHHHHHhCCe--eeCCCCeEeecCceEEEEecCCCccccccccccccCCchh-HHHHHhhhhhhhhhcccccccccccc
Q 002758 608 NSLSKAIQTGK--LPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSE-EKIYRAKSRLTQILIEPALVNRSSSQ 684 (884)
Q Consensus 608 ~~Llq~le~G~--l~ds~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fse-eki~~ak~~~l~i~i~~~~~~~~~~~ 684 (884)
++||++||.-. ++-..||+......|-|-|+|+..- . +..|.. |+|...+.. +-.|++.++.
T Consensus 194 QALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFI-----c---gGAF~GlekiI~~R~~--~~~iGF~a~~----- 258 (408)
T COG1219 194 QALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFI-----C---GGAFAGLEKIIKKRLG--KKGIGFGAEV----- 258 (408)
T ss_pred HHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEE-----e---ccccccHHHHHHHhcc--CCcccccccc-----
Confidence 99999999543 3345678777777777777775321 1 334654 666543221 1122222110
Q ss_pred ccccccccccchhhhhhhhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccC
Q 002758 685 KLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSW 764 (884)
Q Consensus 685 ~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f 764 (884)
+ .+.+ ..+..+..+++ +.+ .-...+.
T Consensus 259 ------------~----~~~~---------~~~~~~~l~~v--------------epe---------------DLvkFGL 284 (408)
T COG1219 259 ------------K----SKSK---------KKEEGELLKQV--------------EPE---------------DLVKFGL 284 (408)
T ss_pred ------------c----chhh---------hhhHHHHHHhc--------------ChH---------------HHHHcCC
Confidence 0 0000 00011222221 000 1134578
Q ss_pred hhHHhcccceeeecCCCCHHHHHHHH---HHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhccCCC-ChHHHHHHHHHHH
Q 002758 765 LQDFFNQRVKIVAFKAFNFDALAEKI---LKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVL 839 (884)
Q Consensus 765 ~~efl~rID~IVvFkPLd~e~L~eIi---~~~L~~~~~~l~g-~gi~L~IddeAle~La~~~~~~~-gaR~le~wIE~vl 839 (884)
.|||++|+..+....+|+.++|.+|+ .+.|-+.+++++. .++.|+++++|+..||..+..+. |||.|+..||.+|
T Consensus 285 IPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~l 364 (408)
T COG1219 285 IPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELL 364 (408)
T ss_pred cHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 99999999999999999999999999 6788888888887 69999999999999999999887 9999999999999
Q ss_pred HHHHHHHHHhc
Q 002758 840 VRGFLDAQEKY 850 (884)
Q Consensus 840 ~~~L~~~~~~~ 850 (884)
.+.+.++...-
T Consensus 365 ld~MfelPs~~ 375 (408)
T COG1219 365 LDVMFELPSLE 375 (408)
T ss_pred HHHHhhCCCCC
Confidence 99999876543
No 12
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.88 E-value=7.8e-23 Score=207.08 Aligned_cols=113 Identities=35% Similarity=0.479 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHc-CCCcceEEeccCCCCCC---CCCCCCcc--ccccccccccccccchHHHHHHHH
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIY-GGKENFICADLCPQDGE---MNNPPKFY--HQVVGGDSVQFRGKTLADYVAWEL 586 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~-gs~~~fi~id~s~~~~e---~~~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal 586 (884)
.+++|.||+|||||+||++||+.++ +...+++++||+.+... .+....++ +++|+
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v------------------- 64 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYV------------------- 64 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHH-------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhccccee-------------------
Confidence 3999999999999999999999999 89999999999976430 01111111 12221
Q ss_pred HhCCCeEEEEccccccCH-----------HHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCccc
Q 002758 587 LKKPLSVVYLENVDKADV-----------HVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 644 (884)
Q Consensus 587 ~~~p~~VIlLDEIEKa~~-----------~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~~ 644 (884)
...+.+|||||||||+|+ .||+.|+++||+|+++|.+|++|+++|+|||||+|.+...
T Consensus 65 ~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~ 133 (171)
T PF07724_consen 65 GAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEE 133 (171)
T ss_dssp HHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHH
T ss_pred eccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccch
Confidence 122235999999999999 9999999999999999999999999999999999986543
No 13
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.4e-21 Score=215.09 Aligned_cols=309 Identities=17% Similarity=0.198 Sum_probs=199.1
Q ss_pred chHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCC------------------C------------------C---
Q 002758 465 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHED------------------H------------------H--- 505 (884)
Q Consensus 465 d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~------------------~------------------~--- 505 (884)
+.-..++|++.|.+.|+||+.|.+.++-+|.++...+.. + .
T Consensus 132 ~~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~ 211 (564)
T KOG0745|consen 132 PPPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQI 211 (564)
T ss_pred CCCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchh
Confidence 445689999999999999999999999888775321111 0 0
Q ss_pred -CCCCC-------CceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccc
Q 002758 506 -GASPR-------RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKT 577 (884)
Q Consensus 506 -~p~~k-------~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~ 577 (884)
++..+ ....+|+.||+|+|||.||+.||+.| +-||+-.||.... -.||+|.+..-
T Consensus 212 ~~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLT----------QAGYVGeDVEs---- 274 (564)
T KOG0745|consen 212 AKALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLT----------QAGYVGEDVES---- 274 (564)
T ss_pred cccccccccceeeecccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchh----------hcccccccHHH----
Confidence 00111 12479999999999999999999999 7899999988533 25888877651
Q ss_pred hHHHH-HHH---HHhCCCeEEEEccccccC--------------HHHHHHHHHHHhCCeeeCC-CC-eEeecCceEEEEe
Q 002758 578 LADYV-AWE---LLKKPLSVVYLENVDKAD--------------VHVQNSLSKAIQTGKLPDS-YG-REVSVSNAIFVTA 637 (884)
Q Consensus 578 ~l~~L-~ea---l~~~p~~VIlLDEIEKa~--------------~~vq~~Llq~le~G~l~ds-~G-r~V~~~naI~IlT 637 (884)
++..| .+| +.+...+|||||||||+. ..||..||+++|.-.+.-. .| ++-.-.+.|-|-|
T Consensus 275 vi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDT 354 (564)
T KOG0745|consen 275 VIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDT 354 (564)
T ss_pred HHHHHHHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEec
Confidence 22222 222 445567899999999975 4699999999985433221 11 1122223444444
Q ss_pred cCCCccccccccccccCCchh-HHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCC
Q 002758 638 SSFVEDARILPSEMKDCKFSE-EKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQH 716 (884)
Q Consensus 638 SN~g~~~~~~~~~~~~~~fse-eki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~ 716 (884)
+|+..-. +..|.. ||+...+-. .-.+++.+.. + -.+|.. . +....
T Consensus 355 tnILFia--------sGAF~~Ldk~I~rR~~--d~slGFg~~s-----------------~---~~vr~~-~--~~~s~- 400 (564)
T KOG0745|consen 355 TNILFIA--------SGAFVGLDKIISRRLD--DKSLGFGAPS-----------------S---KGVRAN-M--ATKSG- 400 (564)
T ss_pred cceEEEe--------cccccchHHHHHHhhc--chhcccCCCC-----------------C---ccchhh-c--ccccC-
Confidence 4432110 223443 555432111 1223332110 0 011210 0 00000
Q ss_pred chhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccceeeecCCCCHHHHHHHH---HHH
Q 002758 717 DTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFDALAEKI---LKD 793 (884)
Q Consensus 717 ~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~IVvFkPLd~e~L~eIi---~~~ 793 (884)
....+.++.. .| +..+..| -....+.|||++|+..+|+|.+|+.++|.+++ ++.
T Consensus 401 ~~~~~~~~~~-----lL-----------~~~~~~D-------LisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPkna 457 (564)
T KOG0745|consen 401 VENDAEKRDE-----LL-----------EKVESGD-------LISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNA 457 (564)
T ss_pred cchhHHHHHH-----HH-----------hhccccc-------hhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhh
Confidence 0011111110 00 0000011 13458899999999999999999999999999 678
Q ss_pred HHHHHhhhcC-CCceEEeCHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHH
Q 002758 794 INASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQ 847 (884)
Q Consensus 794 L~~~~~~l~g-~gi~L~IddeAle~La~~~~~~~-gaR~le~wIE~vl~~~L~~~~ 847 (884)
|-..++.+++ .++.|.++++|++.|+..+..+. |||+|+..+|..|.....++.
T Consensus 458 L~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevP 513 (564)
T KOG0745|consen 458 LGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVP 513 (564)
T ss_pred HHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccCC
Confidence 8888888888 69999999999999999999887 999999999999998887755
No 14
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.82 E-value=2.7e-19 Score=200.99 Aligned_cols=86 Identities=13% Similarity=0.208 Sum_probs=74.5
Q ss_pred ChhHHhcccceeeecCCCCHHHHHHHH---HHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhccC-----CC-ChHHHHH
Q 002758 764 WLQDFFNQRVKIVAFKAFNFDALAEKI---LKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYL-----SE-SNRVIED 833 (884)
Q Consensus 764 f~~efl~rID~IVvFkPLd~e~L~eIi---~~~L~~~~~~l~g-~gi~L~IddeAle~La~~~~~-----~~-gaR~le~ 833 (884)
+.|||++|+..++.++||+.+++.+|+ ...|-+.+..++. .++.|.|+++|++.||..++. .+ |||.|..
T Consensus 318 lIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrt 397 (443)
T PRK05201 318 LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHT 397 (443)
T ss_pred ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 579999999999999999999999999 4556666666665 799999999999999999885 34 9999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 002758 834 WLEKVLVRGFLDAQEK 849 (884)
Q Consensus 834 wIE~vl~~~L~~~~~~ 849 (884)
.+|++|.+...++...
T Consensus 398 I~E~~L~d~~Fe~p~~ 413 (443)
T PRK05201 398 VMEKLLEDISFEAPDM 413 (443)
T ss_pred HHHHHHHHHhccCCCC
Confidence 9999999888876543
No 15
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.80 E-value=1.7e-18 Score=194.60 Aligned_cols=85 Identities=13% Similarity=0.229 Sum_probs=74.9
Q ss_pred ChhHHhcccceeeecCCCCHHHHHHHH---HHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhccC-----CC-ChHHHHH
Q 002758 764 WLQDFFNQRVKIVAFKAFNFDALAEKI---LKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYL-----SE-SNRVIED 833 (884)
Q Consensus 764 f~~efl~rID~IVvFkPLd~e~L~eIi---~~~L~~~~~~l~g-~gi~L~IddeAle~La~~~~~-----~~-gaR~le~ 833 (884)
+.|||++|+..++.++||+.+++.+|+ .+.|-+.+..++. .++.|.|+++|++.||..++. .+ |||.|..
T Consensus 316 lIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrt 395 (441)
T TIGR00390 316 LIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHT 395 (441)
T ss_pred ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 589999999999999999999999999 4566666777766 799999999999999999885 34 9999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002758 834 WLEKVLVRGFLDAQE 848 (884)
Q Consensus 834 wIE~vl~~~L~~~~~ 848 (884)
.+|++|.+...++..
T Consensus 396 ilE~~l~d~~fe~p~ 410 (441)
T TIGR00390 396 VLERLLEDISFEAPD 410 (441)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999988887654
No 16
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.79 E-value=4.1e-18 Score=208.90 Aligned_cols=244 Identities=15% Similarity=0.192 Sum_probs=177.6
Q ss_pred chHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceE
Q 002758 465 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 544 (884)
Q Consensus 465 d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi 544 (884)
+..+++.+.+.|.+.++||+++++.|...+...+... ..++ -.++|+||+|||||++|++||+.+ ..+|+
T Consensus 307 ~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~-~~~~------~~lll~GppG~GKT~lAk~iA~~l---~~~~~ 376 (775)
T TIGR00763 307 ENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRG-KMKG------PILCLVGPPGVGKTSLGKSIAKAL---NRKFV 376 (775)
T ss_pred chhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-CCCC------ceEEEECCCCCCHHHHHHHHHHHh---cCCeE
Confidence 3457889999999999999999999998776543311 1111 169999999999999999999998 46788
Q ss_pred EeccCCCCCCCCCCCCcc--ccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHH----HHHHHHHHhC--
Q 002758 545 CADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHV----QNSLSKAIQT-- 616 (884)
Q Consensus 545 ~id~s~~~~e~~~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~v----q~~Llq~le~-- 616 (884)
+++++.... ...+. ...|+|...+. ..+.+..+... ..||||||||++++.. .+.|+++|+.
T Consensus 377 ~i~~~~~~~----~~~i~g~~~~~~g~~~g~----i~~~l~~~~~~--~~villDEidk~~~~~~~~~~~aLl~~ld~~~ 446 (775)
T TIGR00763 377 RFSLGGVRD----EAEIRGHRRTYVGAMPGR----IIQGLKKAKTK--NPLFLLDEIDKIGSSFRGDPASALLEVLDPEQ 446 (775)
T ss_pred EEeCCCccc----HHHHcCCCCceeCCCCch----HHHHHHHhCcC--CCEEEEechhhcCCccCCCHHHHHHHhcCHHh
Confidence 888763211 11111 12344443331 11223333222 3599999999997754 4889999984
Q ss_pred -CeeeCCC-CeEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhcccccccccccccccccccccc
Q 002758 617 -GKLPDSY-GREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEG 694 (884)
Q Consensus 617 -G~l~ds~-Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~ 694 (884)
+.|.|.. +..+++++++||+|+|...
T Consensus 447 ~~~f~d~~~~~~~d~s~v~~I~TtN~~~---------------------------------------------------- 474 (775)
T TIGR00763 447 NNAFSDHYLDVPFDLSKVIFIATANSID---------------------------------------------------- 474 (775)
T ss_pred cCccccccCCceeccCCEEEEEecCCch----------------------------------------------------
Confidence 6788764 6789999999999998410
Q ss_pred chhhhhhhhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccce
Q 002758 695 MSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVK 774 (884)
Q Consensus 695 ~~~p~~~~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~ 774 (884)
.+.+.|++|++
T Consensus 475 --------------------------------------------------------------------~i~~~L~~R~~- 485 (775)
T TIGR00763 475 --------------------------------------------------------------------TIPRPLLDRME- 485 (775)
T ss_pred --------------------------------------------------------------------hCCHHHhCCee-
Confidence 23356788985
Q ss_pred eeecCCCCHHHHHHHHHHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHhc
Q 002758 775 IVAFKAFNFDALAEKILKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKY 850 (884)
Q Consensus 775 IVvFkPLd~e~L~eIi~~~L~~~~~~l~g-~gi~L~IddeAle~La~~~~~~~-gaR~le~wIE~vl~~~L~~~~~~~ 850 (884)
+|.|.+++.+++.+|+.+.+.....+..+ ....+.++++++++|+. .|.++ |+|.|++.|++++.....++....
T Consensus 486 vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~ 562 (775)
T TIGR00763 486 VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRKAAVKLVEQG 562 (775)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHHHHHHHHhcc
Confidence 78999999999999999888654444333 23468999999999999 57776 999999999999988877766533
No 17
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.76 E-value=5e-18 Score=191.00 Aligned_cols=217 Identities=15% Similarity=0.186 Sum_probs=168.3
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
..||||+.|+..+.+.|.... +.+..+|+.|.+||||..+|++|++.--....+||++||+...
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP----- 286 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP----- 286 (550)
T ss_pred ccceecCHHHHHHHHHHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc-----
Confidence 368999999999999888653 3456899999999999999999999999999999999999542
Q ss_pred CCCccccccccccccccccchHHHHHHHHHhCCC-------eEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecC
Q 002758 558 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL-------SVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 630 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~-------~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~ 630 (884)
.+|+..+++||..| .+++|++.+++ +-+|||||..++..+|..|+++|++|.|..-+|...---
T Consensus 287 -esLlESELFGHeKG--------AFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 287 -ESLLESELFGHEKG--------AFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred -hHHHHHHHhccccc--------ccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 34555577888776 67778776553 579999999999999999999999999988666333334
Q ss_pred ceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCC
Q 002758 631 NAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRN 710 (884)
Q Consensus 631 naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~ 710 (884)
++.||++||. + .
T Consensus 358 DVRiIAATNR--D-L----------------------------------------------------------------- 369 (550)
T COG3604 358 DVRVIAATNR--D-L----------------------------------------------------------------- 369 (550)
T ss_pred EEEEEeccch--h-H-----------------------------------------------------------------
Confidence 5779999984 0 0
Q ss_pred CCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccceeeecCCC------CHH
Q 002758 711 DNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAF------NFD 784 (884)
Q Consensus 711 ~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~IVvFkPL------d~e 784 (884)
.++. . ...|+.|++.||+.+-.+.|. |..
T Consensus 370 --------~~~V-----------------~--------------------~G~FRaDLYyRLsV~Pl~lPPLRER~~DIp 404 (550)
T COG3604 370 --------EEMV-----------------R--------------------DGEFRADLYYRLSVFPLELPPLRERPEDIP 404 (550)
T ss_pred --------HHHH-----------------H--------------------cCcchhhhhhcccccccCCCCcccCCccHH
Confidence 0000 0 126999999999988777766 444
Q ss_pred HHHHHHHHHHHHHHhhhcCCCc-eEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 785 ALAEKILKDINASFRKTVGSEC-LLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 785 ~L~eIi~~~L~~~~~~l~g~gi-~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
-|++.+..+++.. .+. .+.++++|++.|..+.|. |+ |.||+.|+....
T Consensus 405 lLA~~Fle~~~~~------~gr~~l~ls~~Al~~L~~y~wP--GNVRELen~veRavl 454 (550)
T COG3604 405 LLAGYFLEKFRRR------LGRAILSLSAEALELLSSYEWP--GNVRELENVVERAVL 454 (550)
T ss_pred HHHHHHHHHHHHh------cCCcccccCHHHHHHHHcCCCC--CcHHHHHHHHHHHHH
Confidence 5566555555443 244 789999999999999998 66 888888887764
No 18
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.74 E-value=1.9e-16 Score=193.36 Aligned_cols=242 Identities=12% Similarity=0.168 Sum_probs=179.9
Q ss_pred chHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceE
Q 002758 465 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 544 (884)
Q Consensus 465 d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi 544 (884)
+..+++...+.|.+..+|++.+.+.|.+.+..... .... +.+ .++|+||+|+|||++|+.||+.+ ..+|+
T Consensus 309 ~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~-~~~~-----~g~-~i~l~GppG~GKTtl~~~ia~~l---~~~~~ 378 (784)
T PRK10787 309 VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSR-VNKI-----KGP-ILCLVGPPGVGKTSLGQSIAKAT---GRKYV 378 (784)
T ss_pred ccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh-cccC-----CCc-eEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 34478899999999999999999999887775432 1111 112 59999999999999999999987 45688
Q ss_pred EeccCCCCCCCCCCCCcc--ccccccccccccccchHHHHHHHHHhC--CCeEEEEccccccCHHH----HHHHHHHHhC
Q 002758 545 CADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKK--PLSVVYLENVDKADVHV----QNSLSKAIQT 616 (884)
Q Consensus 545 ~id~s~~~~e~~~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~~--p~~VIlLDEIEKa~~~v----q~~Llq~le~ 616 (884)
+++++.... ...+. -..|.|... +.+..++... ...||||||||++.... ++.|+++++.
T Consensus 379 ~i~~~~~~d----~~~i~g~~~~~~g~~~--------G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~ 446 (784)
T PRK10787 379 RMALGGVRD----EAEIRGHRRTYIGSMP--------GKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDP 446 (784)
T ss_pred EEEcCCCCC----HHHhccchhccCCCCC--------cHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhcc
Confidence 888774221 11111 012333322 3455444432 34699999999999876 5999999997
Q ss_pred C---eeeCCCC-eEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhcccccccccccccccccccc
Q 002758 617 G---KLPDSYG-REVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETS 692 (884)
Q Consensus 617 G---~l~ds~G-r~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~ 692 (884)
+ .|.|... -.+++++++||+|+|..
T Consensus 447 ~~~~~~~d~~~~~~~dls~v~~i~TaN~~--------------------------------------------------- 475 (784)
T PRK10787 447 EQNVAFSDHYLEVDYDLSDVMFVATSNSM--------------------------------------------------- 475 (784)
T ss_pred ccEEEEecccccccccCCceEEEEcCCCC---------------------------------------------------
Confidence 5 5777543 46788999999988731
Q ss_pred ccchhhhhhhhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhccc
Q 002758 693 EGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQR 772 (884)
Q Consensus 693 ~~~~~p~~~~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rI 772 (884)
...+.|++|+
T Consensus 476 ----------------------------------------------------------------------~i~~aLl~R~ 485 (784)
T PRK10787 476 ----------------------------------------------------------------------NIPAPLLDRM 485 (784)
T ss_pred ----------------------------------------------------------------------CCCHHHhcce
Confidence 1234688899
Q ss_pred ceeeecCCCCHHHHHHHHHHHHH-HHHhhhcCCCceEEeCHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHhc
Q 002758 773 VKIVAFKAFNFDALAEKILKDIN-ASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKY 850 (884)
Q Consensus 773 D~IVvFkPLd~e~L~eIi~~~L~-~~~~~l~g~gi~L~IddeAle~La~~~~~~~-gaR~le~wIE~vl~~~L~~~~~~~ 850 (884)
.+|.|.+|+.+++.+|+.+.+. +..++.--.+..+.++++++++|+. +|.++ |+|.|++.|++++.+.+.++..+.
T Consensus 486 -~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~ 563 (784)
T PRK10787 486 -EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQLLLDK 563 (784)
T ss_pred -eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999996 3444442245689999999999997 78777 999999999999999998876654
Q ss_pred C
Q 002758 851 N 851 (884)
Q Consensus 851 ~ 851 (884)
.
T Consensus 564 ~ 564 (784)
T PRK10787 564 S 564 (784)
T ss_pred C
Confidence 4
No 19
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.73 E-value=2.3e-17 Score=175.80 Aligned_cols=156 Identities=18% Similarity=0.212 Sum_probs=117.6
Q ss_pred hHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCC--CcceEE
Q 002758 468 NWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG--KENFIC 545 (884)
Q Consensus 468 ~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs--~~~fi~ 545 (884)
++..|++.|...++||.-|++.|..+|+..... +++++++++-|+|++||||.++++.||+.+|.. ..++|+
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n------~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~ 145 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWAN------PNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVH 145 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC------CCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHH
Confidence 478999999999999999999999999988762 234556789999999999999999999999854 345543
Q ss_pred eccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCe
Q 002758 546 ADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGR 625 (884)
Q Consensus 546 id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr 625 (884)
.-.+.. ++.+. .+ .+.|+ .....++.+-++.++.++++|||+|||++.+.+.|...++.-...+
T Consensus 146 ~fvat~--hFP~~------~~---ie~Yk-~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~---- 209 (344)
T KOG2170|consen 146 HFVATL--HFPHA------SK---IEDYK-EELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVS---- 209 (344)
T ss_pred Hhhhhc--cCCCh------HH---HHHHH-HHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccccc----
Confidence 322211 11111 11 11221 1123566677778899999999999999999999999999743332
Q ss_pred EeecCceEEEEecCCCcccc
Q 002758 626 EVSVSNAIFVTASSFVEDAR 645 (884)
Q Consensus 626 ~V~~~naI~IlTSN~g~~~~ 645 (884)
.++++++|||+-||.|++.+
T Consensus 210 gv~frkaIFIfLSN~gg~eI 229 (344)
T KOG2170|consen 210 GVDFRKAIFIFLSNAGGSEI 229 (344)
T ss_pred cccccceEEEEEcCCcchHH
Confidence 48999999999999987654
No 20
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.70 E-value=9.1e-17 Score=183.19 Aligned_cols=218 Identities=16% Similarity=0.196 Sum_probs=163.0
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
..|+|.+.++..+.+.+.+. ++.|..+|+.|.+||||..+|++|++..-+...|||.+||+..
T Consensus 245 ~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi------ 307 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI------ 307 (560)
T ss_pred hhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC------
Confidence 46899998776665555543 2456789999999999999999999998888999999999954
Q ss_pred CCCccccccccccccccccchHHHHHHHHHh-CC-------CeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeec
Q 002758 558 PPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KP-------LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSV 629 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~-~p-------~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~ 629 (884)
+..|+..+++||..| .+++|.+. +| ++-||||||..|+...|..||++|+++.|..-+|.+.--
T Consensus 308 Pe~LlESELFGye~G--------AFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~ 379 (560)
T COG3829 308 PETLLESELFGYEKG--------AFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIP 379 (560)
T ss_pred CHHHHHHHHhCcCCc--------cccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCcee
Confidence 234556677898887 56666664 22 467999999999999999999999999988766644444
Q ss_pred CceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCC
Q 002758 630 SNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGR 709 (884)
Q Consensus 630 ~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~ 709 (884)
-++.||.+||.-- +
T Consensus 380 vDVRIIAATN~nL----------------~-------------------------------------------------- 393 (560)
T COG3829 380 VDVRIIAATNRNL----------------E-------------------------------------------------- 393 (560)
T ss_pred eEEEEEeccCcCH----------------H--------------------------------------------------
Confidence 4566999998410 0
Q ss_pred CCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccceeeecCCC------CH
Q 002758 710 NDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAF------NF 783 (884)
Q Consensus 710 ~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~IVvFkPL------d~ 783 (884)
++. ....|+.||+.|++.+-++-|. |.
T Consensus 394 ----------~~i-------------------------------------~~G~FReDLYYRLNV~~i~iPPLReR~eDI 426 (560)
T COG3829 394 ----------KMI-------------------------------------AEGTFREDLYYRLNVIPITIPPLRERKEDI 426 (560)
T ss_pred ----------HHH-------------------------------------hcCcchhhheeeeceeeecCCCcccCcchH
Confidence 000 0127899999999988666665 44
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 784 DALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 784 e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
..|++.|...+++.+.+. .-.++++|++.|.++.|. |+ |.|++.||..+.
T Consensus 427 ~~L~~~Fl~k~s~~~~~~-----v~~ls~~a~~~L~~y~WP--GNVRELeNviER~v~ 477 (560)
T COG3829 427 PLLAEYFLDKFSRRYGRN-----VKGLSPDALALLLRYDWP--GNVRELENVIERAVN 477 (560)
T ss_pred HHHHHHHHHHHHHHcCCC-----cccCCHHHHHHHHhCCCC--chHHHHHHHHHHHHh
Confidence 455555555555544432 223999999999999998 76 899999888874
No 21
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.67 E-value=4.3e-16 Score=177.80 Aligned_cols=229 Identities=14% Similarity=0.138 Sum_probs=167.1
Q ss_pred hhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCC
Q 002758 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 555 (884)
Q Consensus 476 L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~ 555 (884)
....++|++.++..+...+.+... .+..+|+.|++||||..+|++|++.--+...|||.+||+....
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~-----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~-- 205 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAP-----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE-- 205 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH--
Confidence 456799999999999999887643 3558999999999999999999999888889999999996432
Q ss_pred CCCCCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEE
Q 002758 556 NNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIF 634 (884)
Q Consensus 556 ~~~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~ 634 (884)
.++..+++||+.| |.|.. ..-.+.+.....+.+|||||+.|+..+|..|+++|++|.|+.-+|++.---|+.|
T Consensus 206 ----~l~ESELFGhekGAFTGA~--~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRi 279 (464)
T COG2204 206 ----NLLESELFGHEKGAFTGAI--TRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRI 279 (464)
T ss_pred ----HHHHHHhhcccccCcCCcc--cccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEE
Confidence 3344467788877 33321 1111222334568999999999999999999999999999987764433346779
Q ss_pred EEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCC
Q 002758 635 VTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQ 714 (884)
Q Consensus 635 IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~ 714 (884)
|.+||. +.
T Consensus 280 IaaT~~---dL--------------------------------------------------------------------- 287 (464)
T COG2204 280 IAATNR---DL--------------------------------------------------------------------- 287 (464)
T ss_pred EeecCc---CH---------------------------------------------------------------------
Confidence 999884 00
Q ss_pred CCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccceeeecCCC-C--HHHHHHHHH
Q 002758 715 QHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAF-N--FDALAEKIL 791 (884)
Q Consensus 715 ~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~IVvFkPL-d--~e~L~eIi~ 791 (884)
.+. .....|++||+.|+..+-+.-|. - .++|--++.
T Consensus 288 ----~~~-------------------------------------v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~ 326 (464)
T COG2204 288 ----EEE-------------------------------------VAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAE 326 (464)
T ss_pred ----HHH-------------------------------------HHcCCcHHHHHhhhccceecCCcccccchhHHHHHH
Confidence 000 01237999999999877555555 2 255555555
Q ss_pred HHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 792 KDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 792 ~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
..+.+...+. ..-...|++++++.|..+.|. |+ |.|++.||..+.
T Consensus 327 hfl~~~~~~~--~~~~~~~s~~a~~~L~~y~WP--GNVREL~N~ver~~i 372 (464)
T COG2204 327 HFLKRFAAEL--GRPPKGFSPEALAALLAYDWP--GNVRELENVVERAVI 372 (464)
T ss_pred HHHHHHHHHc--CCCCCCCCHHHHHHHHhCCCC--hHHHHHHHHHHHHHh
Confidence 5555544443 122468999999999999998 76 888888887764
No 22
>CHL00181 cbbX CbbX; Provisional
Probab=99.63 E-value=9e-15 Score=159.97 Aligned_cols=226 Identities=13% Similarity=0.142 Sum_probs=153.1
Q ss_pred chHhHHHHHHHhhccCccchHHHHHHHHHHHH-------HhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHc
Q 002758 465 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQ-------RRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 465 d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~-------~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
+...++.+.+.|.+.++|++.+++.|.+.+.. ...|+..+ +...+++|+||||||||++|+++|+.++
T Consensus 10 ~~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~-----~~~~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 10 EKTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSS-----NPGLHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred cccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45578999999999999999988877655432 12333322 1234799999999999999999999886
Q ss_pred CC----CcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc---------CH
Q 002758 538 GG----KENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA---------DV 604 (884)
Q Consensus 538 gs----~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa---------~~ 604 (884)
.. ..+++.++.+... ..|+|... ....+.+.+..++||||||++.+ ..
T Consensus 85 ~~g~~~~~~~~~v~~~~l~-----------~~~~g~~~--------~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~ 145 (287)
T CHL00181 85 KLGYIKKGHLLTVTRDDLV-----------GQYIGHTA--------PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGS 145 (287)
T ss_pred HcCCCCCCceEEecHHHHH-----------HHHhccch--------HHHHHHHHHccCCEEEEEccchhccCCCccchHH
Confidence 42 2346666543210 12233221 12334455556789999999985 57
Q ss_pred HHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhcccccccccccc
Q 002758 605 HVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQ 684 (884)
Q Consensus 605 ~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~ 684 (884)
++++.|++.|++++ .+.+||++++. + ++.
T Consensus 146 e~~~~L~~~me~~~-----------~~~~vI~ag~~-----------------~-~~~---------------------- 174 (287)
T CHL00181 146 EAIEILLQVMENQR-----------DDLVVIFAGYK-----------------D-RMD---------------------- 174 (287)
T ss_pred HHHHHHHHHHhcCC-----------CCEEEEEeCCc-----------------H-HHH----------------------
Confidence 89999999999642 35677776542 0 000
Q ss_pred ccccccccccchhhhhhhhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccC
Q 002758 685 KLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSW 764 (884)
Q Consensus 685 ~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f 764 (884)
+ ++ ..
T Consensus 175 -------------------~---------------------------~~-----------------------------~~ 179 (287)
T CHL00181 175 -------------------K---------------------------FY-----------------------------ES 179 (287)
T ss_pred -------------------H---------------------------HH-----------------------------hc
Confidence 0 00 11
Q ss_pred hhHHhcccceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHh----ccCCC-C-hHHHHHHHHHH
Q 002758 765 LQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAA----AYLSE-S-NRVIEDWLEKV 838 (884)
Q Consensus 765 ~~efl~rID~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~----~~~~~-g-aR~le~wIE~v 838 (884)
.|.|..|++.+|.|.|++.+++.+|+.+.+.+.. ..+++++.+.|+.. .+.+. | +|.++++|++.
T Consensus 180 np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~---------~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 180 NPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ---------YQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred CHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc---------CCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 2788999999999999999999999999988752 23556655544443 33333 6 69999999999
Q ss_pred HHHHHHHHHHh
Q 002758 839 LVRGFLDAQEK 849 (884)
Q Consensus 839 l~~~L~~~~~~ 849 (884)
....-.++...
T Consensus 251 ~~~~~~r~~~~ 261 (287)
T CHL00181 251 RMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHcC
Confidence 88877766554
No 23
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=8.1e-15 Score=170.98 Aligned_cols=245 Identities=15% Similarity=0.215 Sum_probs=184.1
Q ss_pred chHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceE
Q 002758 465 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 544 (884)
Q Consensus 465 d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi 544 (884)
+.-+++...+.|.+.=+|=+.+.+.|.+.+.-.+.. .+-++ ..++|.||||+|||.|++.||+.+ +..|+
T Consensus 310 ~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~-~~~kG------pILcLVGPPGVGKTSLgkSIA~al---~Rkfv 379 (782)
T COG0466 310 DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT-KKLKG------PILCLVGPPGVGKTSLGKSIAKAL---GRKFV 379 (782)
T ss_pred hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh-ccCCC------cEEEEECCCCCCchhHHHHHHHHh---CCCEE
Confidence 566899999999999999999999999988765431 11112 269999999999999999999999 67899
Q ss_pred EeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHh--CCCeEEEEccccccCHHHH----HHHHHHHh---
Q 002758 545 CADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK--KPLSVVYLENVDKADVHVQ----NSLSKAIQ--- 615 (884)
Q Consensus 545 ~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~--~p~~VIlLDEIEKa~~~vq----~~Llq~le--- 615 (884)
++.++-..++ .+..|+..-|.|. .-|++..++++ ...-|++||||||+..+.+ .+||.+|+
T Consensus 380 R~sLGGvrDE---------AEIRGHRRTYIGa-mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQ 449 (782)
T COG0466 380 RISLGGVRDE---------AEIRGHRRTYIGA-MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQ 449 (782)
T ss_pred EEecCccccH---------HHhcccccccccc-CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhh
Confidence 9998843221 1222333223322 12466666654 2245999999999976543 67888885
Q ss_pred CCeeeCCC-CeEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhcccccccccccccccccccccc
Q 002758 616 TGKLPDSY-GREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEG 694 (884)
Q Consensus 616 ~G~l~ds~-Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~ 694 (884)
+-.|.|.+ .-..|+++++||+|+|...
T Consensus 450 N~~F~DhYLev~yDLS~VmFiaTANsl~---------------------------------------------------- 477 (782)
T COG0466 450 NNTFSDHYLEVPYDLSKVMFIATANSLD---------------------------------------------------- 477 (782)
T ss_pred cCchhhccccCccchhheEEEeecCccc----------------------------------------------------
Confidence 66888876 3578999999999998410
Q ss_pred chhhhhhhhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccce
Q 002758 695 MSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVK 774 (884)
Q Consensus 695 ~~~p~~~~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~ 774 (884)
..+..|+||+ +
T Consensus 478 --------------------------------------------------------------------tIP~PLlDRM-E 488 (782)
T COG0466 478 --------------------------------------------------------------------TIPAPLLDRM-E 488 (782)
T ss_pred --------------------------------------------------------------------cCChHHhcce-e
Confidence 1234567787 5
Q ss_pred eeecCCCCHHHHHHHHHHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 002758 775 IVAFKAFNFDALAEKILKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGFLDAQEKY 850 (884)
Q Consensus 775 IVvFkPLd~e~L~eIi~~~L~~~~~~l~g-~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~~~L~~~~~~~ 850 (884)
+|.+-.++.++-.+|+.+.|-...-+-.| ..-.|.|+++|+.+|..+.....|-|.|++.|.++..+...++..+-
T Consensus 489 iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~ 565 (782)
T COG0466 489 VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKK 565 (782)
T ss_pred eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999888766555545 45579999999999999644444999999999999999999987743
No 24
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.62 E-value=6.7e-15 Score=163.92 Aligned_cols=226 Identities=14% Similarity=0.146 Sum_probs=158.4
Q ss_pred CccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCC
Q 002758 480 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 559 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s 559 (884)
++|++.++..+...+.+... .+.++|+.|++||||+.+|++|+........+|+.+||+....
T Consensus 1 liG~S~~m~~~~~~~~~~a~-----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~------ 63 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE------ 63 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh------
Confidence 57999999998888887643 2347999999999999999999998877788999999995422
Q ss_pred Ccccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEec
Q 002758 560 KFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTAS 638 (884)
Q Consensus 560 ~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTS 638 (884)
.++....+|+..+ |.|.. ..-.+.+.....+++|||||+.++..+|..|+++|++|.+....+...--.++.+|++|
T Consensus 64 ~~l~~~lfG~~~g~~~ga~--~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at 141 (329)
T TIGR02974 64 NLLDSELFGHEAGAFTGAQ--KRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCAT 141 (329)
T ss_pred HHHHHHHhccccccccCcc--cccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEec
Confidence 1111223344332 21110 00011233344689999999999999999999999999887644433334567788888
Q ss_pred CCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCch
Q 002758 639 SFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDT 718 (884)
Q Consensus 639 N~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~~ 718 (884)
+.--.
T Consensus 142 ~~~l~--------------------------------------------------------------------------- 146 (329)
T TIGR02974 142 NADLP--------------------------------------------------------------------------- 146 (329)
T ss_pred hhhHH---------------------------------------------------------------------------
Confidence 63000
Q ss_pred hHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccc-eeeecCCCC--HHHHHHHHHHHHH
Q 002758 719 SEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRV-KIVAFKAFN--FDALAEKILKDIN 795 (884)
Q Consensus 719 ~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID-~IVvFkPLd--~e~L~eIi~~~L~ 795 (884)
.+ .....|+++|+.|+. ..|...||. .++|..++...+.
T Consensus 147 -~~-------------------------------------~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 147 -AL-------------------------------------AAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred -HH-------------------------------------hhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 00 002268899999995 468888886 3778888877777
Q ss_pred HHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 796 ASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 796 ~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
+...+. +..+...++++|++.|..+.|. |+ |.|++.|+..+.
T Consensus 189 ~~~~~~-~~~~~~~ls~~a~~~L~~y~WP--GNvrEL~n~i~~~~~ 231 (329)
T TIGR02974 189 RMAREL-GLPLFPGFTPQAREQLLEYHWP--GNVRELKNVVERSVY 231 (329)
T ss_pred HHHHHh-CCCCCCCcCHHHHHHHHhCCCC--chHHHHHHHHHHHHH
Confidence 654432 3332257999999999999997 66 888888887665
No 25
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4e-14 Score=152.82 Aligned_cols=84 Identities=13% Similarity=0.209 Sum_probs=70.9
Q ss_pred ChhHHhcccceeeecCCCCHHHHHHHH---HHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhccC-----CC-ChHHHHH
Q 002758 764 WLQDFFNQRVKIVAFKAFNFDALAEKI---LKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYL-----SE-SNRVIED 833 (884)
Q Consensus 764 f~~efl~rID~IVvFkPLd~e~L~eIi---~~~L~~~~~~l~g-~gi~L~IddeAle~La~~~~~-----~~-gaR~le~ 833 (884)
..|||-+|+...|.+++|+.+++.+|+ ...|.+.+..++. .++.|.+++++++.||..+|. .+ |||-|..
T Consensus 319 LiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhT 398 (444)
T COG1220 319 LIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHT 398 (444)
T ss_pred cChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHH
Confidence 578999999999999999999999999 4566666666665 799999999999999999994 22 9999999
Q ss_pred HHHHHHHHHHHHHH
Q 002758 834 WLEKVLVRGFLDAQ 847 (884)
Q Consensus 834 wIE~vl~~~L~~~~ 847 (884)
.+|++|-....++.
T Consensus 399 vlErlLediSFeA~ 412 (444)
T COG1220 399 VLERLLEDISFEAP 412 (444)
T ss_pred HHHHHHHHhCccCC
Confidence 99998876655543
No 26
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.57 E-value=1.7e-13 Score=149.74 Aligned_cols=219 Identities=12% Similarity=0.097 Sum_probs=150.7
Q ss_pred hHHHHHHHhhccCccchHHHHHHHHHHHHH-------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCC-
Q 002758 468 NWKTLFRALTEKIDWQDEAISVISQTIAQR-------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG- 539 (884)
Q Consensus 468 ~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~-------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs- 539 (884)
.++++.+.|...++|.+++.+.|...+... +.|+... . ....++|+||+|||||++|+++|+.++..
T Consensus 12 ~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~-~----~~~~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 12 GITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA-A----PTLHMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred cHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-C----CCceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 478899999999999999988876654321 2333221 1 12379999999999999999999988642
Q ss_pred ---CcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc---------CHHHH
Q 002758 540 ---KENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA---------DVHVQ 607 (884)
Q Consensus 540 ---~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa---------~~~vq 607 (884)
..+|+.+++... + ..|+|... ..+.+.+.+...+|||||||+.+ ...++
T Consensus 87 ~~~~~~~v~v~~~~l----------~-~~~~g~~~--------~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~ 147 (284)
T TIGR02880 87 YVRKGHLVSVTRDDL----------V-GQYIGHTA--------PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAI 147 (284)
T ss_pred CcccceEEEecHHHH----------h-Hhhcccch--------HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHH
Confidence 236777775421 1 12333221 13334444445689999999976 46789
Q ss_pred HHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccc
Q 002758 608 NSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLS 687 (884)
Q Consensus 608 ~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~ 687 (884)
+.|++.|++++ .+.++|++++.- ++
T Consensus 148 ~~Ll~~le~~~-----------~~~~vI~a~~~~------------------~~-------------------------- 172 (284)
T TIGR02880 148 EILLQVMENQR-----------DDLVVILAGYKD------------------RM-------------------------- 172 (284)
T ss_pred HHHHHHHhcCC-----------CCEEEEEeCCcH------------------HH--------------------------
Confidence 99999999653 356777765420 00
Q ss_pred cccccccchhhhhhhhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhH
Q 002758 688 ASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQD 767 (884)
Q Consensus 688 ~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~e 767 (884)
.. -....|.
T Consensus 173 ---------~~--------------------------------------------------------------~~~~np~ 181 (284)
T TIGR02880 173 ---------DS--------------------------------------------------------------FFESNPG 181 (284)
T ss_pred ---------HH--------------------------------------------------------------HHhhCHH
Confidence 00 0012367
Q ss_pred HhcccceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHh-------ccCCCC-hHHHHHHHHHHH
Q 002758 768 FFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAA-------AYLSES-NRVIEDWLEKVL 839 (884)
Q Consensus 768 fl~rID~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~-------~~~~~g-aR~le~wIE~vl 839 (884)
|..|++..|.|.||+.+++.+|+...+.+.. ..+++++++.++.+ .|. | +|.+++++++.+
T Consensus 182 L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~---------~~l~~~a~~~L~~~l~~~~~~~~~--GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 182 FSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ---------YRFSAEAEEAFADYIALRRTQPHF--ANARSIRNAIDRAR 250 (284)
T ss_pred HHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc---------cccCHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHH
Confidence 8889999999999999999999999887741 34788888888876 444 5 588888888887
Q ss_pred HHHHHHHH
Q 002758 840 VRGFLDAQ 847 (884)
Q Consensus 840 ~~~L~~~~ 847 (884)
...=.++.
T Consensus 251 ~~~~~r~~ 258 (284)
T TIGR02880 251 LRQANRLF 258 (284)
T ss_pred HHHHHHHh
Confidence 66555444
No 27
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.57 E-value=4.4e-14 Score=167.10 Aligned_cols=226 Identities=15% Similarity=0.172 Sum_probs=157.6
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
+.++|++.++..+.+.+.+... .+.++||.|++||||+.+|++|+........+|+.+||+....
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~---- 260 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE---- 260 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH----
Confidence 4789999999999888887642 2347999999999999999999998887888999999995422
Q ss_pred CCCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEE
Q 002758 558 PPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVT 636 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~Il 636 (884)
.++...++|+..+ |.|.. ..-.+.+.....+++|||||+++++.+|..|+++|++|.+....|....-.++.||+
T Consensus 261 --~~~~~~lfg~~~~~~~~~~--~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~ 336 (534)
T TIGR01817 261 --TLLESELFGHEKGAFTGAI--AQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVA 336 (534)
T ss_pred --HHHHHHHcCCCCCccCCCC--cCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEE
Confidence 1111122344332 11110 000011222346899999999999999999999999998875444222223567888
Q ss_pred ecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCC
Q 002758 637 ASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQH 716 (884)
Q Consensus 637 TSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~ 716 (884)
||+.... +
T Consensus 337 ~s~~~l~--------------~---------------------------------------------------------- 344 (534)
T TIGR01817 337 ATNRDLE--------------E---------------------------------------------------------- 344 (534)
T ss_pred eCCCCHH--------------H----------------------------------------------------------
Confidence 8874100 0
Q ss_pred chhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhccccee-eecCCCC--HHHHHHHHHHH
Q 002758 717 DTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAFN--FDALAEKILKD 793 (884)
Q Consensus 717 ~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~I-VvFkPLd--~e~L~eIi~~~ 793 (884)
.. ....|.++|++|+..+ |...||. .++|..++...
T Consensus 345 ----~~-------------------------------------~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~ 383 (534)
T TIGR01817 345 ----AV-------------------------------------AKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAF 383 (534)
T ss_pred ----HH-------------------------------------HcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHH
Confidence 00 0226889999999765 5566686 47788888777
Q ss_pred HHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 794 INASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 794 L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
+.+...+. +. .+.+++++++.|..+.|. |+ |.|++.|+..+.
T Consensus 384 l~~~~~~~-~~--~~~~s~~a~~~L~~~~WP--GNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 384 LEKFNREN-GR--PLTITPSAIRVLMSCKWP--GNVRELENCLERTAT 426 (534)
T ss_pred HHHHHHHc-CC--CCCCCHHHHHHHHhCCCC--ChHHHHHHHHHHHHH
Confidence 77654432 32 368999999999999997 65 788888887664
No 28
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.52 E-value=1.5e-13 Score=153.05 Aligned_cols=229 Identities=15% Similarity=0.159 Sum_probs=156.5
Q ss_pred hccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCC
Q 002758 477 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 556 (884)
Q Consensus 477 ~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~ 556 (884)
.+.++|++.++..+.+.+.+... .+.++|+.|++||||+.+|++|+........+|+.+||+....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~-----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~--- 70 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE--- 70 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH---
Confidence 34689999999999888887642 2347999999999999999999987766678999999996432
Q ss_pred CCCCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEE
Q 002758 557 NPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFV 635 (884)
Q Consensus 557 ~~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~I 635 (884)
.++...++|+..+ |.|.. ..-.+.+.....+++||||||.+++.+|..|+++|++|.+....|...--.++.||
T Consensus 71 ---~~~~~~lfg~~~~~~~g~~--~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI 145 (326)
T PRK11608 71 ---NLLDSELFGHEAGAFTGAQ--KRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLV 145 (326)
T ss_pred ---HHHHHHHccccccccCCcc--cccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence 1111122343322 11110 00011223344689999999999999999999999999876533322222357788
Q ss_pred EecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCC
Q 002758 636 TASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQ 715 (884)
Q Consensus 636 lTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~ 715 (884)
+||+.--.
T Consensus 146 ~~s~~~l~------------------------------------------------------------------------ 153 (326)
T PRK11608 146 CATNADLP------------------------------------------------------------------------ 153 (326)
T ss_pred EeCchhHH------------------------------------------------------------------------
Confidence 88763000
Q ss_pred CchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccc-eeeecCCCCH--HHHHHHHHH
Q 002758 716 HDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRV-KIVAFKAFNF--DALAEKILK 792 (884)
Q Consensus 716 ~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID-~IVvFkPLd~--e~L~eIi~~ 792 (884)
.+ .....|.++|++++. ..|...||.. ++|..++..
T Consensus 154 ----~l-------------------------------------~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~ 192 (326)
T PRK11608 154 ----AM-------------------------------------VAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEH 192 (326)
T ss_pred ----HH-------------------------------------HHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHH
Confidence 00 001268889999994 4677888854 678777777
Q ss_pred HHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 793 DINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 793 ~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
.+.+...++ +..+...|++++++.|..+.|. |+ |.|++.|+..+.
T Consensus 193 fl~~~~~~~-~~~~~~~~s~~al~~L~~y~WP--GNvrEL~~vl~~a~~ 238 (326)
T PRK11608 193 FAIQMCREL-GLPLFPGFTERARETLLNYRWP--GNIRELKNVVERSVY 238 (326)
T ss_pred HHHHHHHHh-CCCCCCCCCHHHHHHHHhCCCC--cHHHHHHHHHHHHHH
Confidence 776654432 3333357999999999999998 66 788888877654
No 29
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.52 E-value=2.3e-13 Score=160.11 Aligned_cols=227 Identities=12% Similarity=0.116 Sum_probs=157.4
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
..++|++.++..+.+.+.+... .+.++|+.|++||||+.+|++|+........+|+.+||+....
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~-----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~---- 251 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAA-----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE---- 251 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh----
Confidence 3699999999999999988643 2347999999999999999999998877788999999996532
Q ss_pred CCCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEE
Q 002758 558 PPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVT 636 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~Il 636 (884)
.++...++|+..+ |.|... .-.+.+.....+++||||||.+++.+|..|+++|++|.+....+....-.++.||+
T Consensus 252 --~~~e~~lfG~~~g~~~ga~~--~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 327 (509)
T PRK05022 252 --SLAESELFGHVKGAFTGAIS--NRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIA 327 (509)
T ss_pred --HHHHHHhcCccccccCCCcc--cCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEE
Confidence 1111233344332 222100 00111223346889999999999999999999999998765433322224567888
Q ss_pred ecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCC
Q 002758 637 ASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQH 716 (884)
Q Consensus 637 TSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~ 716 (884)
||+.--. .
T Consensus 328 ~t~~~l~-----------------------------------------------------~------------------- 335 (509)
T PRK05022 328 ATNRDLR-----------------------------------------------------E------------------- 335 (509)
T ss_pred ecCCCHH-----------------------------------------------------H-------------------
Confidence 8874100 0
Q ss_pred chhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhccccee-eecCCCCH--HHHHHHHHHH
Q 002758 717 DTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAFNF--DALAEKILKD 793 (884)
Q Consensus 717 ~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~I-VvFkPLd~--e~L~eIi~~~ 793 (884)
. -....|.++|++|+..+ |...||.. ++|..++...
T Consensus 336 ----~-------------------------------------~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~f 374 (509)
T PRK05022 336 ----E-------------------------------------VRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYF 374 (509)
T ss_pred ----H-------------------------------------HHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHH
Confidence 0 00126888999999765 66777744 5677777777
Q ss_pred HHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 794 INASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 794 L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
+.+...++ +. -.+.|++++++.|..+.|. |+ |.|++.|+..+.
T Consensus 375 l~~~~~~~-~~-~~~~~s~~a~~~L~~y~WP--GNvrEL~~~i~ra~~ 418 (509)
T PRK05022 375 LEQNRARL-GL-RSLRLSPAAQAALLAYDWP--GNVRELEHVISRAAL 418 (509)
T ss_pred HHHHHHHc-CC-CCCCCCHHHHHHHHhCCCC--CcHHHHHHHHHHHHH
Confidence 76654433 21 2368999999999999998 65 788888877655
No 30
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.51 E-value=9.4e-13 Score=137.58 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=71.0
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
+.++||++.+..+.-.+...+. +..+.. +++|+||||+|||+||+.||+.+ +.+|..+.....+.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~----r~~~l~----h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~k---- 88 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK----RGEALD----HMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIEK---- 88 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC----TTS-------EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--S----
T ss_pred HHccCcHHHHhhhHHHHHHHHh----cCCCcc----eEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhhh----
Confidence 6789999999988777766543 122233 89999999999999999999998 34555444321100
Q ss_pred CCCccccccccccccccccchHHHHHHHHHh-CCCeEEEEccccccCHHHHHHHHHHHhCCeee
Q 002758 558 PPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~-~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ 620 (884)
. +.++..+.. .+..|+|||||++++..+|+.|+.+||+|.+.
T Consensus 89 -------------~--------~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~id 131 (233)
T PF05496_consen 89 -------------A--------GDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKID 131 (233)
T ss_dssp -------------C--------HHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEE
T ss_pred -------------H--------HHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEE
Confidence 0 233333322 45679999999999999999999999999864
No 31
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.50 E-value=2.3e-13 Score=159.84 Aligned_cols=224 Identities=11% Similarity=0.096 Sum_probs=157.4
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 558 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~ 558 (884)
.++|++.++..+...+.+... .+.++|+.|++||||+.+|++|+........+|+.+||+....
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~-----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e----- 276 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYAR-----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE----- 276 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh-----
Confidence 489999999998888877533 2347999999999999999999988777788999999995432
Q ss_pred CCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEe
Q 002758 559 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 637 (884)
Q Consensus 559 s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlT 637 (884)
.++...++|+.+| |.|..- +.-.+.+.....+.||||||+.+++.+|..|+++|+++.+....+...--.++.+|++
T Consensus 277 -~lleseLFG~~~gaftga~~-~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaa 354 (526)
T TIGR02329 277 -SLLEAELFGYEEGAFTGARR-GGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAA 354 (526)
T ss_pred -hHHHHHhcCCcccccccccc-cccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEec
Confidence 2222344566554 322110 0001112223468999999999999999999999999988764443322235668888
Q ss_pred cCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCc
Q 002758 638 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 717 (884)
Q Consensus 638 SN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~ 717 (884)
|+.--. .
T Consensus 355 t~~~l~-----------------------------------------------------~-------------------- 361 (526)
T TIGR02329 355 THCALT-----------------------------------------------------T-------------------- 361 (526)
T ss_pred cCCCHH-----------------------------------------------------H--------------------
Confidence 864000 0
Q ss_pred hhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccc-eeeecCCCCH--HHHHHHHHHHH
Q 002758 718 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRV-KIVAFKAFNF--DALAEKILKDI 794 (884)
Q Consensus 718 ~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID-~IVvFkPLd~--e~L~eIi~~~L 794 (884)
. -....|+++|++|+. ..|...||-. ++|..++...+
T Consensus 362 ---~-------------------------------------v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl 401 (526)
T TIGR02329 362 ---A-------------------------------------VQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYL 401 (526)
T ss_pred ---H-------------------------------------hhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHH
Confidence 0 001268889999997 4577777754 67888877777
Q ss_pred HHHHhhhcCCCceEEeCHHHHHH-------HHHhccCCCCh-HHHHHHHHHHHH
Q 002758 795 NASFRKTVGSECLLEIDRKVMEQ-------LLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 795 ~~~~~~l~g~gi~L~IddeAle~-------La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
.+...+. .+.+++++++. |..+.|. |+ |.|++.|++.+.
T Consensus 402 ~~~~~~~-----~~~~~~~a~~~~~~~~~~L~~y~WP--GNvrEL~nvier~~i 448 (526)
T TIGR02329 402 VQAAAAL-----RLPDSEAAAQVLAGVADPLQRYPWP--GNVRELRNLVERLAL 448 (526)
T ss_pred HHHHHHc-----CCCCCHHHHHHhHHHHHHHHhCCCC--chHHHHHHHHHHHHH
Confidence 7754432 23589999888 9999998 66 889999888765
No 32
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.49 E-value=2.9e-13 Score=159.06 Aligned_cols=224 Identities=12% Similarity=0.102 Sum_probs=153.2
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHH--------HcCCCcceEEeccCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEI--------IYGGKENFICADLCP 550 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~--------L~gs~~~fi~id~s~ 550 (884)
.++|++.++..+...+.+... .+.++|+.|++||||+.+|++|+.. ......+|+.+||+.
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A~-----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaa 288 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYAR-----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA 288 (538)
T ss_pred heeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeeccc
Confidence 489999999999888887543 2347999999999999999999998 445678999999996
Q ss_pred CCCCCCCCCCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeec
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSV 629 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~ 629 (884)
... .++...++|+.+| |.|..- +.-.+.+.....+.||||||+.+++.+|..|+++|+++.+....|.+.--
T Consensus 289 l~e------~lleseLFG~~~gaftga~~-~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~ 361 (538)
T PRK15424 289 IAE------SLLEAELFGYEEGAFTGSRR-GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVP 361 (538)
T ss_pred CCh------hhHHHHhcCCccccccCccc-cccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceec
Confidence 432 2222344566554 222100 00011122334689999999999999999999999999887644433222
Q ss_pred CceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCC
Q 002758 630 SNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGR 709 (884)
Q Consensus 630 ~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~ 709 (884)
.++.+|++||.--. .
T Consensus 362 ~dvRiIaat~~~L~-----------------------------------------------------~------------ 376 (538)
T PRK15424 362 VDVRVISATHCDLE-----------------------------------------------------E------------ 376 (538)
T ss_pred cceEEEEecCCCHH-----------------------------------------------------H------------
Confidence 35678888874000 0
Q ss_pred CCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhccccee-eecCCCCH--HHH
Q 002758 710 NDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAFNF--DAL 786 (884)
Q Consensus 710 ~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~I-VvFkPLd~--e~L 786 (884)
+ -....|+++|++|+..+ |...||.+ +||
T Consensus 377 -----------~-------------------------------------v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI 408 (538)
T PRK15424 377 -----------D-------------------------------------VRQGRFRRDLFYRLSILRLQLPPLRERVADI 408 (538)
T ss_pred -----------H-------------------------------------HhcccchHHHHHHhcCCeecCCChhhchhHH
Confidence 0 00126888999998654 56666644 678
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEeCHHHH-------HHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 787 AEKILKDINASFRKTVGSECLLEIDRKVM-------EQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 787 ~eIi~~~L~~~~~~l~g~gi~L~IddeAl-------e~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
..++...+.+...+. ...++++++ +.|..+.|. |+ |.|++.|++.+.
T Consensus 409 ~~L~~~fl~~~~~~~-----~~~~~~~a~~~~~~a~~~L~~y~WP--GNvREL~nvier~~i 463 (538)
T PRK15424 409 LPLAESFLKQSLAAL-----SAPFSAALRQGLQQCETLLLHYDWP--GNVRELRNLMERLAL 463 (538)
T ss_pred HHHHHHHHHHHHHHc-----CCCCCHHHHHhhHHHHHHHHhCCCC--chHHHHHHHHHHHHH
Confidence 888877777654432 122556555 788888897 66 889999988765
No 33
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.49 E-value=4.1e-13 Score=148.69 Aligned_cols=105 Identities=15% Similarity=0.247 Sum_probs=72.0
Q ss_pred ccCccchHHHHH---HHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCC
Q 002758 478 EKIDWQDEAISV---ISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGE 554 (884)
Q Consensus 478 ~~ViGQ~eAi~~---Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e 554 (884)
+.|+||++.+.. |.++|.... .. +++|+||||||||++|+.||... +..|..++....
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~---------l~----SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~--- 84 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGH---------LH----SMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTS--- 84 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCC---------Cc----eeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccc---
Confidence 457999987733 333333221 12 79999999999999999999976 566777764421
Q ss_pred CCCCCCccccccccccccccccchHHHHHHH---HHhCCCeEEEEccccccCHHHHHHHHHHHhCCeee
Q 002758 555 MNNPPKFYHQVVGGDSVQFRGKTLADYVAWE---LLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 555 ~~~~s~L~p~gy~G~~~g~rgk~~l~~L~ea---l~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ 620 (884)
|- +.....+.++ .......|+|||||++.+..-|+.||..||+|.++
T Consensus 85 -------------gv------kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii 134 (436)
T COG2256 85 -------------GV------KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII 134 (436)
T ss_pred -------------cH------HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEE
Confidence 10 1111222222 11234689999999999999999999999998654
No 34
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.49 E-value=1.3e-12 Score=141.06 Aligned_cols=213 Identities=15% Similarity=0.164 Sum_probs=138.7
Q ss_pred cCccchHHHHHHHHHHHHH-------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcC----CCcceEEec
Q 002758 479 KIDWQDEAISVISQTIAQR-------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG----GKENFICAD 547 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~-------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~g----s~~~fi~id 547 (884)
.++|++.++..|...+... +.|+..+. ...+++|+||+|||||++|+++|+.++. ....++.++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~-----~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~ 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSK-----QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-----CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec
Confidence 3799998887776554332 23333222 2247999999999999999999998753 223555555
Q ss_pred cCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccC--------HHHHHHHHHHHhCCee
Q 002758 548 LCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD--------VHVQNSLSKAIQTGKL 619 (884)
Q Consensus 548 ~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~--------~~vq~~Llq~le~G~l 619 (884)
++.... .|+|... ..+.+.+.+...+|||||||+.+. .+.++.|++.|+++.
T Consensus 82 ~~~l~~-----------~~~g~~~--------~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~- 141 (261)
T TIGR02881 82 RADLVG-----------EYIGHTA--------QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR- 141 (261)
T ss_pred HHHhhh-----------hhccchH--------HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-
Confidence 442111 2222211 234455555567899999999865 467889999998742
Q ss_pred eCCCCeEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhh
Q 002758 620 PDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQK 699 (884)
Q Consensus 620 ~ds~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~ 699 (884)
.+.++|+++.. . + + .+
T Consensus 142 ----------~~~~vila~~~--~--------------~--------------~-----------------------~~- 157 (261)
T TIGR02881 142 ----------NEFVLILAGYS--D--------------E--------------M-----------------------DY- 157 (261)
T ss_pred ----------CCEEEEecCCc--c--------------h--------------h-----------------------HH-
Confidence 23456665431 0 0 0 00
Q ss_pred hhhhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccceeeecC
Q 002758 700 LLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFK 779 (884)
Q Consensus 700 ~~~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~IVvFk 779 (884)
...+.|.|..|++..|.|.
T Consensus 158 -------------------------------------------------------------~~~~~p~L~sRf~~~i~f~ 176 (261)
T TIGR02881 158 -------------------------------------------------------------FLSLNPGLRSRFPISIDFP 176 (261)
T ss_pred -------------------------------------------------------------HHhcChHHHhccceEEEEC
Confidence 0012356788888899999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhc----c--C-CCC-hHHHHHHHHHHHHHHHHHHHHhc
Q 002758 780 AFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAA----Y--L-SES-NRVIEDWLEKVLVRGFLDAQEKY 850 (884)
Q Consensus 780 PLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~----~--~-~~g-aR~le~wIE~vl~~~L~~~~~~~ 850 (884)
+++.+++.+|+.+.+... .+.++++++++|+... | . ..| +|.+.+.++..+.+....+....
T Consensus 177 ~~~~~el~~Il~~~~~~~---------~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~~ 246 (261)
T TIGR02881 177 DYTVEELMEIAERMVKER---------EYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDKS 246 (261)
T ss_pred CCCHHHHHHHHHHHHHHc---------CCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999887542 3569999999997652 2 1 113 48899999998887766655443
No 35
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.47 E-value=5e-13 Score=161.39 Aligned_cols=224 Identities=10% Similarity=0.132 Sum_probs=153.7
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
..++|++.++..+...+.+... .+.++||.|++||||+.+|++|+........+|+.+||+....
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~---- 389 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK-----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD---- 389 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh----
Confidence 4688999988887777776532 2347999999999999999999998877788999999996432
Q ss_pred CCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEe
Q 002758 558 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 637 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlT 637 (884)
.++...++|+..+-......+. +.....++||||||+.+++.+|..|+++|++|.++...+...---++.||+|
T Consensus 390 --~~~~~elfg~~~~~~~~~~~g~----~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~ 463 (638)
T PRK11388 390 --EALAEEFLGSDRTDSENGRLSK----FELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIAT 463 (638)
T ss_pred --HHHHHHhcCCCCcCccCCCCCc----eeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEe
Confidence 1111223343311000000111 2233468999999999999999999999999988754442211124568888
Q ss_pred cCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCc
Q 002758 638 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 717 (884)
Q Consensus 638 SN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~ 717 (884)
|+..-. .
T Consensus 464 t~~~l~-----------------------------------------------------~-------------------- 470 (638)
T PRK11388 464 TTADLA-----------------------------------------------------M-------------------- 470 (638)
T ss_pred ccCCHH-----------------------------------------------------H--------------------
Confidence 874100 0
Q ss_pred hhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhccccee-eecCCCCH--HHHHHHHHHHH
Q 002758 718 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAFNF--DALAEKILKDI 794 (884)
Q Consensus 718 ~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~I-VvFkPLd~--e~L~eIi~~~L 794 (884)
+. ....|+++|+.|+..+ |...||-. ++|..++...+
T Consensus 471 ---~~-------------------------------------~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l 510 (638)
T PRK11388 471 ---LV-------------------------------------EQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKL 510 (638)
T ss_pred ---HH-------------------------------------hcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHH
Confidence 00 0126888899998655 55666644 57888888887
Q ss_pred HHHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 795 NASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 795 ~~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
.+...+. +. .+.+++++++.|..+.|. |+ |.|++.|+..+.
T Consensus 511 ~~~~~~~-~~--~~~~s~~a~~~L~~y~WP--GNvreL~~~l~~~~~ 552 (638)
T PRK11388 511 RSLEKRF-ST--RLKIDDDALARLVSYRWP--GNDFELRSVIENLAL 552 (638)
T ss_pred HHHHHHh-CC--CCCcCHHHHHHHHcCCCC--ChHHHHHHHHHHHHH
Confidence 7754432 22 357999999999999998 65 788888887654
No 36
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.5e-12 Score=149.56 Aligned_cols=245 Identities=15% Similarity=0.198 Sum_probs=180.0
Q ss_pred hHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEE
Q 002758 466 LSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 545 (884)
Q Consensus 466 ~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~ 545 (884)
.-++..-.+.|.+.=+|-+++.+.|.+.|.-++.... -. | -.++|+||||+|||.+|+.||+.| +..|.+
T Consensus 399 n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs-~q---G---kIlCf~GPPGVGKTSI~kSIA~AL---nRkFfR 468 (906)
T KOG2004|consen 399 NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGS-VQ---G---KILCFVGPPGVGKTSIAKSIARAL---NRKFFR 468 (906)
T ss_pred hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhccc-CC---C---cEEEEeCCCCCCcccHHHHHHHHh---CCceEE
Confidence 3356677788999999999999999999988765211 11 2 169999999999999999999999 567888
Q ss_pred eccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHh--CCCeEEEEccccccCHHH----HHHHHHHHh---C
Q 002758 546 ADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK--KPLSVVYLENVDKADVHV----QNSLSKAIQ---T 616 (884)
Q Consensus 546 id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~--~p~~VIlLDEIEKa~~~v----q~~Llq~le---~ 616 (884)
|..+-..+ .. +..|+..-|.|. .-+++.+++++ ..+-+|+||||||+.... -.+||.+|+ +
T Consensus 469 fSvGG~tD----vA-----eIkGHRRTYVGA-MPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQN 538 (906)
T KOG2004|consen 469 FSVGGMTD----VA-----EIKGHRRTYVGA-MPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQN 538 (906)
T ss_pred Eecccccc----HH-----hhcccceeeecc-CChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhc
Confidence 88774322 11 122332222221 22578888875 235699999999986432 357777775 5
Q ss_pred CeeeCCC-CeEeecCceEEEEecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccc
Q 002758 617 GKLPDSY-GREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGM 695 (884)
Q Consensus 617 G~l~ds~-Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~ 695 (884)
..|.|.+ .-.+|+++++||+|.|...
T Consensus 539 anFlDHYLdVp~DLSkVLFicTAN~id----------------------------------------------------- 565 (906)
T KOG2004|consen 539 ANFLDHYLDVPVDLSKVLFICTANVID----------------------------------------------------- 565 (906)
T ss_pred cchhhhccccccchhheEEEEeccccc-----------------------------------------------------
Confidence 6777765 3689999999999998510
Q ss_pred hhhhhhhhhhccCCCCCCCCCchhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhccccee
Q 002758 696 SHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI 775 (884)
Q Consensus 696 ~~p~~~~KRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~I 775 (884)
..++.|++|+ ++
T Consensus 566 -------------------------------------------------------------------tIP~pLlDRM-Ev 577 (906)
T KOG2004|consen 566 -------------------------------------------------------------------TIPPPLLDRM-EV 577 (906)
T ss_pred -------------------------------------------------------------------cCChhhhhhh-he
Confidence 1234566777 57
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHhhhcC-CCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 002758 776 VAFKAFNFDALAEKILKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGFLDAQEKYN 851 (884)
Q Consensus 776 VvFkPLd~e~L~eIi~~~L~~~~~~l~g-~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~~~L~~~~~~~~ 851 (884)
|..--+..++-.+|+.+.|-....+..| ..-.+.|++.|+..|+.+..-..|-|.|++.|++++...-.++-...+
T Consensus 578 IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv~~~~ 654 (906)
T KOG2004|consen 578 IELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKVALKVVEGEN 654 (906)
T ss_pred eeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888899999999999999887776655 344699999999999997554449999999999999988777666553
No 37
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.43 E-value=1.7e-12 Score=153.07 Aligned_cols=227 Identities=11% Similarity=0.068 Sum_probs=151.9
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
+.++|++.++..+...+.+... .+.++++.|++||||+.+|++++........+|+.+||+....
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~-----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~---- 268 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM-----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD---- 268 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH----
Confidence 4689999988887777766432 1336999999999999999999988877788999999996432
Q ss_pred CCCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEE
Q 002758 558 PPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVT 636 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~Il 636 (884)
.++...++|+..+ |.+.. ..-.+.+.....+.||||||+.+++.+|..|+++|++|.++...+......++.||+
T Consensus 269 --~~~e~elFG~~~~~~~~~~--~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~ 344 (520)
T PRK10820 269 --DVVESELFGHAPGAYPNAL--EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 344 (520)
T ss_pred --HHHHHHhcCCCCCCcCCcc--cCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEE
Confidence 1111122333322 11100 000011222346889999999999999999999999998876443322234567888
Q ss_pred ecCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCC
Q 002758 637 ASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQH 716 (884)
Q Consensus 637 TSN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~ 716 (884)
||+.--.
T Consensus 345 st~~~l~------------------------------------------------------------------------- 351 (520)
T PRK10820 345 ATQKNLV------------------------------------------------------------------------- 351 (520)
T ss_pred ecCCCHH-------------------------------------------------------------------------
Confidence 8763000
Q ss_pred chhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccc-eeeecCCCCH--HHHHHHHHHH
Q 002758 717 DTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRV-KIVAFKAFNF--DALAEKILKD 793 (884)
Q Consensus 717 ~~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID-~IVvFkPLd~--e~L~eIi~~~ 793 (884)
++. ....|+++|+.|+. ..|...||.. ++|..++...
T Consensus 352 ---~l~-------------------------------------~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~f 391 (520)
T PRK10820 352 ---ELV-------------------------------------QKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELF 391 (520)
T ss_pred ---HHH-------------------------------------HcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHH
Confidence 000 01267888999976 4566777754 5677777777
Q ss_pred HHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 794 INASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 794 L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
+.+...+. +. -...++++++++|..+.|. |+ |.|++.|+..+.
T Consensus 392 l~~~~~~~-g~-~~~~ls~~a~~~L~~y~WP--GNvreL~nvl~~a~~ 435 (520)
T PRK10820 392 VARFADEQ-GV-PRPKLAADLNTVLTRYGWP--GNVRQLKNAIYRALT 435 (520)
T ss_pred HHHHHHHc-CC-CCCCcCHHHHHHHhcCCCC--CHHHHHHHHHHHHHH
Confidence 76654432 21 1347999999999999997 65 777777776664
No 38
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.42 E-value=4.4e-13 Score=135.75 Aligned_cols=142 Identities=14% Similarity=0.146 Sum_probs=97.6
Q ss_pred CccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCC
Q 002758 480 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 559 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s 559 (884)
++|.+.++..+.+.+.+... .+..+|++|++||||+.+|++|++.......+|+.+||+.+..
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~------ 63 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE------ 63 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H------
T ss_pred CEeCCHHHHHHHHHHHHHhC-----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc------
Confidence 58999999888888877643 2347999999999999999999998877889999999996532
Q ss_pred Ccccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEec
Q 002758 560 KFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTAS 638 (884)
Q Consensus 560 ~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTS 638 (884)
..+...++|+..+ |-+... .-.+.+.....+++|||||+.+++.+|..|+++|++|.++...+.+..-.++.||+||
T Consensus 64 ~~~e~~LFG~~~~~~~~~~~--~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st 141 (168)
T PF00158_consen 64 ELLESELFGHEKGAFTGARS--DKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAST 141 (168)
T ss_dssp HHHHHHHHEBCSSSSTTTSS--EBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEE
T ss_pred chhhhhhhcccccccccccc--ccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeec
Confidence 1111233444432 111100 0113445556789999999999999999999999999998754433333478899999
Q ss_pred CC
Q 002758 639 SF 640 (884)
Q Consensus 639 N~ 640 (884)
+.
T Consensus 142 ~~ 143 (168)
T PF00158_consen 142 SK 143 (168)
T ss_dssp SS
T ss_pred Cc
Confidence 85
No 39
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.40 E-value=5.7e-12 Score=153.44 Aligned_cols=226 Identities=13% Similarity=0.151 Sum_probs=155.6
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 558 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~ 558 (884)
.++|++.++..+...+..... .+.++|+.|++||||+.+|++|+........+|+.+||.....
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~-----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~----- 440 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQ-----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA----- 440 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-----
Confidence 589999999998888876532 2337999999999999999999998877788999999995422
Q ss_pred CCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEe
Q 002758 559 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 637 (884)
Q Consensus 559 s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlT 637 (884)
.++...++|+..+ |.|... .. .+.+.....+++|||||+.+++.+|..|+++|+++.+....+...-..++.+|+|
T Consensus 441 -~~~~~~lfg~~~~~~~g~~~-~~-~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~ 517 (686)
T PRK15429 441 -GLLESDLFGHERGAFTGASA-QR-IGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAA 517 (686)
T ss_pred -hHhhhhhcCccccccccccc-ch-hhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEe
Confidence 1111223343322 222100 01 1223334468999999999999999999999999988764443333346778888
Q ss_pred cCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCc
Q 002758 638 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 717 (884)
Q Consensus 638 SN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~ 717 (884)
|+.--. . .
T Consensus 518 t~~~l~-----------------------------------------------------~------~------------- 525 (686)
T PRK15429 518 TNRDLK-----------------------------------------------------K------M------------- 525 (686)
T ss_pred CCCCHH-----------------------------------------------------H------H-------------
Confidence 874100 0 0
Q ss_pred hhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhccccee-eecCCCCH--HHHHHHHHHHH
Q 002758 718 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAFNF--DALAEKILKDI 794 (884)
Q Consensus 718 ~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~I-VvFkPLd~--e~L~eIi~~~L 794 (884)
.....|..+|++|+... |...||.. ++|..++...+
T Consensus 526 -----------------------------------------~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l 564 (686)
T PRK15429 526 -----------------------------------------VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFT 564 (686)
T ss_pred -----------------------------------------HHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHH
Confidence 00126788899998755 66777744 67777777777
Q ss_pred HHHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 795 NASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 795 ~~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
.+...+. ++.+ ..|++++++.|..+.|. |+ |.|++.|+..+.
T Consensus 565 ~~~~~~~-~~~~-~~~s~~al~~L~~y~WP--GNvrEL~~~i~~a~~ 607 (686)
T PRK15429 565 FKIARRM-GRNI-DSIPAETLRTLSNMEWP--GNVRELENVIERAVL 607 (686)
T ss_pred HHHHHHc-CCCC-CCcCHHHHHHHHhCCCC--CcHHHHHHHHHHHHH
Confidence 6654432 2222 35999999999999997 65 788888887764
No 40
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.40 E-value=1.8e-12 Score=146.02 Aligned_cols=147 Identities=12% Similarity=0.137 Sum_probs=103.3
Q ss_pred HhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcC-CCcceEEeccCCCCC
Q 002758 475 ALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG-GKENFICADLCPQDG 553 (884)
Q Consensus 475 ~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~g-s~~~fi~id~s~~~~ 553 (884)
.....++|.+.....+.+.+... + ..+..+|+.|++|+||+.+|++|+..--. ...+||.+||+.+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~-a----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAY-A----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhh-C----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 33456899998888877777762 1 12347999999999999999999955545 478999999997654
Q ss_pred CCCCCCCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCce
Q 002758 554 EMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNA 632 (884)
Q Consensus 554 e~~~~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~na 632 (884)
+... ..++|+..| |.|.. ..-.+.+.....+.+|||||..+++..|..|+++||+|.++.-.+..+--.++
T Consensus 144 n~~~------~eLFG~~kGaftGa~--~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dV 215 (403)
T COG1221 144 NLQE------AELFGHEKGAFTGAQ--GGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDV 215 (403)
T ss_pred CHHH------HHHhccccceeeccc--CCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCc
Confidence 2111 124566665 33311 01112222334679999999999999999999999999988655544444566
Q ss_pred EEEEecCC
Q 002758 633 IFVTASSF 640 (884)
Q Consensus 633 I~IlTSN~ 640 (884)
.+|++|+.
T Consensus 216 Rli~AT~~ 223 (403)
T COG1221 216 RLICATTE 223 (403)
T ss_pred eeeecccc
Confidence 68887774
No 41
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.37 E-value=5.3e-12 Score=146.83 Aligned_cols=226 Identities=16% Similarity=0.177 Sum_probs=153.0
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 558 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~ 558 (884)
.++|...++..+...+..... .+..+++.|++|+||+.+|++|+........+|+.+||+....
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~----- 202 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSR-----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK----- 202 (469)
T ss_pred cceecCHHHHHHHHHHHHHhc-----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-----
Confidence 478888888887777765322 2347999999999999999999998887889999999986432
Q ss_pred CCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEe
Q 002758 559 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 637 (884)
Q Consensus 559 s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlT 637 (884)
.++....+|+..| |.|... .-.+.+....++.+||||||.+++.+|..|+++|++|.+....|......++.||+|
T Consensus 203 -~~~~~~lfg~~~g~~~~~~~--~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~ 279 (469)
T PRK10923 203 -DLIESELFGHEKGAFTGANT--IRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAA 279 (469)
T ss_pred -HHHHHHhcCCCCCCCCCCCc--CCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEe
Confidence 1111122343332 111100 001112233467899999999999999999999999998875553333346779998
Q ss_pred cCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCc
Q 002758 638 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 717 (884)
Q Consensus 638 SN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~ 717 (884)
|+..-.
T Consensus 280 ~~~~l~-------------------------------------------------------------------------- 285 (469)
T PRK10923 280 THQNLE-------------------------------------------------------------------------- 285 (469)
T ss_pred CCCCHH--------------------------------------------------------------------------
Confidence 874000
Q ss_pred hhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhccccee-eecCCCCH--HHHHHHHHHHH
Q 002758 718 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAFNF--DALAEKILKDI 794 (884)
Q Consensus 718 ~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~I-VvFkPLd~--e~L~eIi~~~L 794 (884)
.+. ....|.++|++|+..+ |...||.. ++|..++...+
T Consensus 286 --~~~-------------------------------------~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l 326 (469)
T PRK10923 286 --QRV-------------------------------------QEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFL 326 (469)
T ss_pred --HHH-------------------------------------HcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHH
Confidence 000 0126888999999644 55555533 67777777777
Q ss_pred HHHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 795 NASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 795 ~~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
.+...+. +.. ...++++|++.|..+.|. |+ |.|++.|+..+.
T Consensus 327 ~~~~~~~-~~~-~~~~~~~a~~~L~~~~wp--gNv~eL~~~i~~~~~ 369 (469)
T PRK10923 327 QVAAREL-GVE-AKLLHPETEAALTRLAWP--GNVRQLENTCRWLTV 369 (469)
T ss_pred HHHHHHc-CCC-CCCcCHHHHHHHHhCCCC--ChHHHHHHHHHHHHH
Confidence 7654432 221 246999999999999997 65 888888888765
No 42
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.35 E-value=2.3e-11 Score=143.84 Aligned_cols=126 Identities=16% Similarity=0.174 Sum_probs=80.1
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHH-------cCCCcceEEeccCC-
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII-------YGGKENFICADLCP- 550 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L-------~gs~~~fi~id~s~- 550 (884)
.++||++++..+..++. . ..+.++||+||+|||||++|+++++.. +....+|+.+||+.
T Consensus 66 ~iiGqs~~i~~l~~al~---~----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~ 132 (531)
T TIGR02902 66 EIIGQEEGIKALKAALC---G----------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTA 132 (531)
T ss_pred HeeCcHHHHHHHHHHHh---C----------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccc
Confidence 48999999988775531 1 112379999999999999999998753 22346899999873
Q ss_pred -CCCCCCCCCCcc----ccccccccc-cccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeee
Q 002758 551 -QDGEMNNPPKFY----HQVVGGDSV-QFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 551 -~~~e~~~~s~L~----p~gy~G~~~-g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ 620 (884)
.+.. ...+.++ .+.|.+... ++.|. ...-.+++.+..+++||||||+++++..|+.|+++|+++++.
T Consensus 133 ~~~~~-~~~~~li~~~~~p~~~~~~~~g~~g~--~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~ 205 (531)
T TIGR02902 133 RFDER-GIADPLIGSVHDPIYQGAGPLGIAGI--PQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVF 205 (531)
T ss_pred cCCcc-ccchhhcCCcccchhccccccccCCc--ccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeee
Confidence 1110 0011111 111211100 00000 011123455556799999999999999999999999998654
No 43
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.8e-11 Score=139.56 Aligned_cols=137 Identities=18% Similarity=0.105 Sum_probs=82.0
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
+.|+||++++..|..++...+. .-.+||+||+|+|||++|+.||+.+......-. ..|..+.. ...
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri------------~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~-~pCg~C~s-C~~ 83 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKI------------GHAYIFFGPRGVGKTTIARILAKRLNCENPIGN-EPCNECTS-CLE 83 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHhcCcccccCc-cccCCCcH-HHH
Confidence 4689999999988888765332 115999999999999999999999875321100 00110000 000
Q ss_pred CCCccccccccccc-cccccchHHHHHHHHH----hCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCce
Q 002758 558 PPKFYHQVVGGDSV-QFRGKTLADYVAWELL----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNA 632 (884)
Q Consensus 558 ~s~L~p~gy~G~~~-g~rgk~~l~~L~eal~----~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~na 632 (884)
...-..+.+...+. ..+|...+..+.+.+. ...+.|+||||||.++...++.|++.||+-. .++
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp-----------~~v 152 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP-----------AHI 152 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC-----------Cce
Confidence 00000000100000 0111112233333333 3456899999999999999999999998631 367
Q ss_pred EEEEecC
Q 002758 633 IFVTASS 639 (884)
Q Consensus 633 I~IlTSN 639 (884)
+||++|+
T Consensus 153 iFILaTt 159 (484)
T PRK14956 153 VFILATT 159 (484)
T ss_pred EEEeecC
Confidence 8998887
No 44
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=6e-11 Score=141.57 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=82.4
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEEe-ccCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFICA-DLCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~i-d~s~~~ 552 (884)
+.|+||+++++.|.+++...+. .-.+||+||.|+|||++|++||+.++.... ++-.+ .|..+.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL------------~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRL------------HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHh
Confidence 5689999999988888764322 125899999999999999999999974321 11000 011111
Q ss_pred CCCCCCCCccccccccccc-cccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 553 GEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~-g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
. ..+ +.++..+. ..++...+..+.+.+.. ..+.||||||+|+++...+|.|++.||+..
T Consensus 84 ~-G~h------~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP--------- 147 (830)
T PRK07003 84 E-GRF------VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP--------- 147 (830)
T ss_pred c-CCC------ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC---------
Confidence 0 000 01111000 01222112333343332 357899999999999999999999999731
Q ss_pred ecCceEEEEecCC
Q 002758 628 SVSNAIFVTASSF 640 (884)
Q Consensus 628 ~~~naI~IlTSN~ 640 (884)
.+++|||+||-
T Consensus 148 --~~v~FILaTtd 158 (830)
T PRK07003 148 --PHVKFILATTD 158 (830)
T ss_pred --CCeEEEEEECC
Confidence 36779998873
No 45
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=6.9e-11 Score=143.41 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=82.4
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEEec-cCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFICAD-LCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~id-~s~~~ 552 (884)
+.|+||+.++..|.+++...+. .-.+||+||+|+|||++|++||+.+++... ++..++ |-...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl------------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRL------------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC------------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 4689999999998888765433 124799999999999999999999975421 111110 00000
Q ss_pred CCCCCCCCccccccccccccccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 553 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
. ..... ++ .+.+. ..++...+..+.+.+.. .++.||||||+|+++...++.|++.||+..
T Consensus 84 ~-g~~~D-vi--EidAa--s~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP---------- 147 (944)
T PRK14949 84 Q-GRFVD-LI--EVDAA--SRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP---------- 147 (944)
T ss_pred c-CCCce-EE--Eeccc--cccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC----------
Confidence 0 00000 00 00010 01122222344444443 456899999999999999999999999731
Q ss_pred cCceEEEEecC
Q 002758 629 VSNAIFVTASS 639 (884)
Q Consensus 629 ~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 148 -~~vrFILaTT 157 (944)
T PRK14949 148 -EHVKFLLATT 157 (944)
T ss_pred -CCeEEEEECC
Confidence 2566888765
No 46
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.30 E-value=5.2e-11 Score=137.03 Aligned_cols=147 Identities=20% Similarity=0.121 Sum_probs=100.9
Q ss_pred hHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEE
Q 002758 466 LSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 545 (884)
Q Consensus 466 ~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~ 545 (884)
.+.+..|...|.+.|+||+++|+.+..++... + ++||.||||+|||++|++||..+.... +|..
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aalag-----------~----hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~ 71 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALSG-----------E----SVFLLGPPGIAKSLIARRLKFAFQNAR-AFEY 71 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHccC-----------C----CEEEECCCChhHHHHHHHHHHHhcccC-ccee
Confidence 45688999999999999999998877765421 1 699999999999999999999875543 6665
Q ss_pred eccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCC---CeEEEEccccccCHHHHHHHHHHHhCCeeeCC
Q 002758 546 ADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKP---LSVVYLENVDKADVHVQNSLSKAIQTGKLPDS 622 (884)
Q Consensus 546 id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p---~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds 622 (884)
+.+.... +. +.+|...-+..+. .+.+.. ....+ ..|+|+|||.++++.+|+.|+++|+++.++.
T Consensus 72 ~~~~ftt-----p~-----DLfG~l~i~~~~~-~g~f~r-~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~- 138 (498)
T PRK13531 72 LMTRFST-----PE-----EVFGPLSIQALKD-EGRYQR-LTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRN- 138 (498)
T ss_pred eeeeecC-----cH-----HhcCcHHHhhhhh-cCchhh-hcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEec-
Confidence 5554211 11 2222210000000 001110 11111 1389999999999999999999999999997
Q ss_pred CCeEeecCceEEEEecCCC
Q 002758 623 YGREVSVSNAIFVTASSFV 641 (884)
Q Consensus 623 ~Gr~V~~~naI~IlTSN~g 641 (884)
.|++..+.--+||.+||..
T Consensus 139 g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 139 GAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred CCeEEeCCCcEEEEECCCC
Confidence 5677777766777777743
No 47
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.29 E-value=3e-11 Score=140.12 Aligned_cols=226 Identities=15% Similarity=0.184 Sum_probs=155.3
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 558 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~ 558 (884)
.++|...++..+...+..... .+..+++.|.+|+||+.+|++|+........+|+.+||+....
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~-----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~----- 198 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR-----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK----- 198 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC-----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-----
Confidence 478888888888877765322 2347999999999999999999998887889999999985422
Q ss_pred CCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEe
Q 002758 559 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 637 (884)
Q Consensus 559 s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlT 637 (884)
.++....+|+..+ |.|.. ..-.+.+.....+.||||||+.+++.+|..|+++|++|.+....|......++.||+|
T Consensus 199 -~~~~~~lfg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~ 275 (463)
T TIGR01818 199 -DLIESELFGHEKGAFTGAN--TRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAA 275 (463)
T ss_pred -HHHHHHhcCCCCCCCCCcc--cCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEe
Confidence 1111122343322 11110 0001112233467899999999999999999999999988765554333346678888
Q ss_pred cCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCc
Q 002758 638 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 717 (884)
Q Consensus 638 SN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~ 717 (884)
|+.... .
T Consensus 276 ~~~~l~----------------~--------------------------------------------------------- 282 (463)
T TIGR01818 276 THQNLE----------------A--------------------------------------------------------- 282 (463)
T ss_pred CCCCHH----------------H---------------------------------------------------------
Confidence 874100 0
Q ss_pred hhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccce-eeecCCCC--HHHHHHHHHHHH
Q 002758 718 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVK-IVAFKAFN--FDALAEKILKDI 794 (884)
Q Consensus 718 ~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~-IVvFkPLd--~e~L~eIi~~~L 794 (884)
+. ....|.++|+.|+.. .|...||. .++|..++...+
T Consensus 283 ---~~-------------------------------------~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l 322 (463)
T TIGR01818 283 ---LV-------------------------------------RQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFL 322 (463)
T ss_pred ---HH-------------------------------------HcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHH
Confidence 00 012678889999875 67777886 578888888877
Q ss_pred HHHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 795 NASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 795 ~~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
.+...+. +.. ...++++|++.|..+.|. |+ |.|++.|+..+.
T Consensus 323 ~~~~~~~-~~~-~~~~~~~a~~~L~~~~wp--gNvreL~~~~~~~~~ 365 (463)
T TIGR01818 323 ALAAREL-DVE-PKLLDPEALERLKQLRWP--GNVRQLENLCRWLTV 365 (463)
T ss_pred HHHHHHh-CCC-CCCcCHHHHHHHHhCCCC--ChHHHHHHHHHHHHH
Confidence 7754432 211 246999999999999996 65 888888888765
No 48
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=7.2e-11 Score=139.65 Aligned_cols=133 Identities=15% Similarity=0.122 Sum_probs=80.7
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEEe-ccCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFICA-DLCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~i-d~s~~~ 552 (884)
..|+||+.+++.|..++...+. .-.+||+||+|+|||++|++||+.+..... ++-.+ .|....
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl------------~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRL------------HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 4689999999999888874332 126899999999999999999999864321 10000 011000
Q ss_pred CCCCCCCCccccccccccccccccchHHHHHHHHH----hCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 553 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~----~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
. ..++ .++ .+.+. ..++..-+..+.+.+. ...+.|++|||+|.++...++.|++.||+..
T Consensus 83 ~-g~hp-Dvi--EIDAA--s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP---------- 146 (702)
T PRK14960 83 E-GRFI-DLI--EIDAA--SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP---------- 146 (702)
T ss_pred c-CCCC-ceE--Eeccc--ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC----------
Confidence 0 0000 010 00000 0011111223333332 2356899999999999999999999999731
Q ss_pred cCceEEEEecC
Q 002758 629 VSNAIFVTASS 639 (884)
Q Consensus 629 ~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 147 -~~v~FILaTt 156 (702)
T PRK14960 147 -EHVKFLFATT 156 (702)
T ss_pred -CCcEEEEEEC
Confidence 2467888875
No 49
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=7.4e-11 Score=139.27 Aligned_cols=132 Identities=15% Similarity=0.129 Sum_probs=83.7
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc---------ceEEec-
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE---------NFICAD- 547 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~---------~fi~id- 547 (884)
+.|+||+++++.|.+++...+. .-.+||+||.|+|||++|+.||+.++.... ++..+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gRL------------pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRL------------HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCC------------ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 4689999999999988876543 125899999999999999999999975311 110000
Q ss_pred cCCCCCCCCCCCCccccccccccc-cccccchHHHHHHHHH----hCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCC
Q 002758 548 LCPQDGEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELL----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS 622 (884)
Q Consensus 548 ~s~~~~e~~~~s~L~p~gy~G~~~-g~rgk~~l~~L~eal~----~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds 622 (884)
|...+. ..+ +.+...+. ..++...+..+.+.+. ...+.||||||+|+++...+|.||+.||+--
T Consensus 84 C~~I~a-G~h------pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP---- 152 (700)
T PRK12323 84 CTEIDA-GRF------VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP---- 152 (700)
T ss_pred HHHHHc-CCC------CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC----
Confidence 000000 000 11111000 0112212233444433 3447899999999999999999999999731
Q ss_pred CCeEeecCceEEEEecC
Q 002758 623 YGREVSVSNAIFVTASS 639 (884)
Q Consensus 623 ~Gr~V~~~naI~IlTSN 639 (884)
.+++|||+||
T Consensus 153 -------~~v~FILaTt 162 (700)
T PRK12323 153 -------EHVKFILATT 162 (700)
T ss_pred -------CCceEEEEeC
Confidence 3677999887
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.27 E-value=2.5e-10 Score=125.45 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=71.5
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
+.++||++.+..|...+...+... ++ .-+++|+||+|+|||++|+++|+.+. ..+..++.....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~----~~----~~~~ll~Gp~G~GKT~la~~ia~~~~---~~~~~~~~~~~~----- 67 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ----EA----LDHLLLYGPPGLGKTTLAHIIANEMG---VNLKITSGPALE----- 67 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC----CC----CCeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeccchhc-----
Confidence 357999999999888876543311 11 12699999999999999999999873 223333222100
Q ss_pred CCCccccccccccccccccchHHHHHHHHHh-CCCeEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 558 PPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~-~p~~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
. .+.+...+.. ....|+|||||+++++..++.|+.+|++.+
T Consensus 68 ------------~--------~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~ 109 (305)
T TIGR00635 68 ------------K--------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFR 109 (305)
T ss_pred ------------C--------chhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhh
Confidence 0 0122232222 235799999999999999999999999764
No 51
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.27 E-value=5.1e-11 Score=137.64 Aligned_cols=226 Identities=15% Similarity=0.145 Sum_probs=149.5
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 558 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~ 558 (884)
.++|++..+..+...+..... .+.++++.|++|+||+.+|++++........+|+.+||+....
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~----- 203 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAP-----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE----- 203 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-----
Confidence 478888888887777765421 1236889999999999999999998777778999999995422
Q ss_pred CCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEe
Q 002758 559 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 637 (884)
Q Consensus 559 s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlT 637 (884)
.++...++|+..+ |.|.. ....+.+....++++|||||+.+++.+|..|+++|+++.+....|.+..-.++.||+|
T Consensus 204 -~~~~~~lfg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~ 280 (445)
T TIGR02915 204 -NLLESELFGYEKGAFTGAV--KQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCA 280 (445)
T ss_pred -HHHHHHhcCCCCCCcCCCc--cCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEe
Confidence 1221223343332 11110 0011122334468999999999999999999999999987654443322246778888
Q ss_pred cCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCc
Q 002758 638 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 717 (884)
Q Consensus 638 SN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~ 717 (884)
|+..-. + .
T Consensus 281 ~~~~l~--------------~---------------------------------------------~------------- 288 (445)
T TIGR02915 281 TNQDLK--------------R---------------------------------------------M------------- 288 (445)
T ss_pred cCCCHH--------------H---------------------------------------------H-------------
Confidence 874100 0 0
Q ss_pred hhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhcccce-eeecCCCCH--HHHHHHHHHHH
Q 002758 718 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVK-IVAFKAFNF--DALAEKILKDI 794 (884)
Q Consensus 718 ~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~-IVvFkPLd~--e~L~eIi~~~L 794 (884)
.....|.++|+.|+.. .|...||.. ++|..++...+
T Consensus 289 -----------------------------------------~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l 327 (445)
T TIGR02915 289 -----------------------------------------IAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFL 327 (445)
T ss_pred -----------------------------------------HHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHH
Confidence 0012577788888764 456666643 56766666666
Q ss_pred HHHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 795 NASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 795 ~~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
.+...+. ++ -...+++++++.|..+.|. |+ |.|++.|+..+.
T Consensus 328 ~~~~~~~-~~-~~~~~~~~a~~~L~~~~wp--gNvreL~~~i~~a~~ 370 (445)
T TIGR02915 328 ERFAREL-KR-KTKGFTDDALRALEAHAWP--GNVRELENKVKRAVI 370 (445)
T ss_pred HHHHHHh-CC-CCCCCCHHHHHHHHhCCCC--ChHHHHHHHHHHHHH
Confidence 6643332 21 1357999999999999997 55 788888887764
No 52
>PLN03025 replication factor C subunit; Provisional
Probab=99.26 E-value=1.2e-10 Score=129.35 Aligned_cols=116 Identities=19% Similarity=0.224 Sum_probs=76.8
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCC--cceEEeccCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK--ENFICADLCPQDGEMN 556 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~--~~fi~id~s~~~~e~~ 556 (884)
.|+||++++..|...+...+ .+ +++|+||+|+|||++|+++|+.+++.. ..++.++.+.
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~---------~~----~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd------ 74 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGN---------MP----NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD------ 74 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCC---------Cc----eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc------
Confidence 47899998887766544211 12 699999999999999999999998753 2233333221
Q ss_pred CCCCccccccccccccccccchHHHHHHHHH-------hCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeec
Q 002758 557 NPPKFYHQVVGGDSVQFRGKTLADYVAWELL-------KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSV 629 (884)
Q Consensus 557 ~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~-------~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~ 629 (884)
.+|...+..+..... ...+.||+|||+|.+....|+.|++.||.. .
T Consensus 75 ----------------~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~--~--------- 127 (319)
T PLN03025 75 ----------------DRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY--S--------- 127 (319)
T ss_pred ----------------cccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc--c---------
Confidence 011111112211111 124689999999999999999999999852 1
Q ss_pred CceEEEEecCC
Q 002758 630 SNAIFVTASSF 640 (884)
Q Consensus 630 ~naI~IlTSN~ 640 (884)
..+.||++||.
T Consensus 128 ~~t~~il~~n~ 138 (319)
T PLN03025 128 NTTRFALACNT 138 (319)
T ss_pred CCceEEEEeCC
Confidence 23568888873
No 53
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.26 E-value=1.3e-10 Score=133.45 Aligned_cols=105 Identities=13% Similarity=0.205 Sum_probs=70.7
Q ss_pred cCccchHHHHH---HHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCC
Q 002758 479 KIDWQDEAISV---ISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 555 (884)
Q Consensus 479 ~ViGQ~eAi~~---Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~ 555 (884)
.++||++++.. |...+...+. . .++|+||+|+|||++|++||+.+ ...|+.++.....
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~~---------~----~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~--- 73 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGRL---------S----SMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSG--- 73 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCCC---------c----eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccc---
Confidence 58999998766 6555532111 1 69999999999999999999987 4567777654210
Q ss_pred CCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 556 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 556 ~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
. ...+ ...+............||||||||++....|+.|+..+++|.
T Consensus 74 -------------~-~~ir--~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~ 120 (413)
T PRK13342 74 -------------V-KDLR--EVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT 120 (413)
T ss_pred -------------H-HHHH--HHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc
Confidence 0 0000 011111111222356899999999999999999999999753
No 54
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=9.9e-11 Score=137.49 Aligned_cols=132 Identities=17% Similarity=0.112 Sum_probs=82.2
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEEec-cCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFICAD-LCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~id-~s~~~ 552 (884)
+.|+||+++++.|..++...+. +-.+||+||+|+|||++|++||+.++.... ++-.+. |...+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 83 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYL------------HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC------------CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh
Confidence 4689999999999988875433 125899999999999999999999975321 100000 00000
Q ss_pred CCCCCCCCccccccccccc-cccccchHHHHHHHHH----hCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 553 GEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELL----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~-g~rgk~~l~~L~eal~----~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
. ..+ +.+...+. ..++..-+..+.+.+. ..++.|++|||+|+++...++.|++.||+--
T Consensus 84 ~-g~~------~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp--------- 147 (509)
T PRK14958 84 E-GRF------PDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP--------- 147 (509)
T ss_pred c-CCC------ceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC---------
Confidence 0 000 11110010 0111111233444333 2456899999999999999999999999731
Q ss_pred ecCceEEEEecC
Q 002758 628 SVSNAIFVTASS 639 (884)
Q Consensus 628 ~~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 148 --~~~~fIlatt 157 (509)
T PRK14958 148 --SHVKFILATT 157 (509)
T ss_pred --CCeEEEEEEC
Confidence 3567888775
No 55
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=1.3e-10 Score=142.58 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=81.5
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEEec-cCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFICAD-LCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~id-~s~~~ 552 (884)
+.|+||+.+++.|..++...+. .-.+||+||+|+|||++|+.||+.|+.... ++-.+. |....
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri------------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRI------------NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC------------CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 4689999999998888775332 115999999999999999999999974221 111100 00000
Q ss_pred C-CCCCCCCccccccccccccccccchHHHHHHHHH----hCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 553 G-EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 553 ~-e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~----~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
. ...+. .++ .+.+.. .++...+..|.+.+. ...+.||||||+|+++...+|.|+++||+--
T Consensus 83 ~g~~~~~-dv~--eidaas--~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP--------- 148 (824)
T PRK07764 83 PGGPGSL-DVT--EIDAAS--HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP--------- 148 (824)
T ss_pred cCCCCCC-cEE--Eecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC---------
Confidence 0 00000 011 000100 111111223333222 3457899999999999999999999999721
Q ss_pred ecCceEEEEecC
Q 002758 628 SVSNAIFVTASS 639 (884)
Q Consensus 628 ~~~naI~IlTSN 639 (884)
.+++|||+|+
T Consensus 149 --~~~~fIl~tt 158 (824)
T PRK07764 149 --EHLKFIFATT 158 (824)
T ss_pred --CCeEEEEEeC
Confidence 3677888775
No 56
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.9e-10 Score=135.57 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=80.7
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCC----cceEEe-ccCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK----ENFICA-DLCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~----~~fi~i-d~s~~~ 552 (884)
+.|+||+.++..+..++...+. +-.+||+||+|+|||++|++||+.++... .+.-.+ .|....
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl------------~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKV------------HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 4689999999988887764322 12589999999999999999999987421 111000 000000
Q ss_pred CCCCCCCCccccccccccc-cccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 553 GEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~-g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
. ..+ +.+...+. ...|..-...+.+.+.. ..+.||+|||+|+++...++.|++.||+.-
T Consensus 84 ~-~~~------~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp--------- 147 (546)
T PRK14957 84 N-NSF------IDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP--------- 147 (546)
T ss_pred c-CCC------CceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC---------
Confidence 0 000 01100000 00111112334444433 356899999999999999999999999742
Q ss_pred ecCceEEEEecC
Q 002758 628 SVSNAIFVTASS 639 (884)
Q Consensus 628 ~~~naI~IlTSN 639 (884)
..++||++|+
T Consensus 148 --~~v~fIL~Tt 157 (546)
T PRK14957 148 --EYVKFILATT 157 (546)
T ss_pred --CCceEEEEEC
Confidence 2466887764
No 57
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=3.3e-10 Score=128.10 Aligned_cols=133 Identities=16% Similarity=0.089 Sum_probs=80.1
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEE-eccCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFIC-ADLCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~-id~s~~~ 552 (884)
+.|+||+++++.+..++...+. +-.+||+||+|+|||++|+++|+.++.... +.-. ..|....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~------------~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRI------------HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCC------------CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 4689999999998887764322 115899999999999999999999864311 1100 0011000
Q ss_pred CCCCCCCCccccccccccccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 553 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
. .... .++ .+.+.. ..+......+.+.+... .+.||+|||+|+++...++.|++.||+..
T Consensus 84 ~-~~~~-d~~--~~~~~~--~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~---------- 147 (363)
T PRK14961 84 K-GLCL-DLI--EIDAAS--RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP---------- 147 (363)
T ss_pred c-CCCC-ceE--Eecccc--cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC----------
Confidence 0 0000 000 000000 01111123444444433 35799999999999999999999999731
Q ss_pred cCceEEEEecC
Q 002758 629 VSNAIFVTASS 639 (884)
Q Consensus 629 ~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 148 -~~~~fIl~t~ 157 (363)
T PRK14961 148 -QHIKFILATT 157 (363)
T ss_pred -CCeEEEEEcC
Confidence 2466888765
No 58
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.24 E-value=5.1e-10 Score=124.81 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=72.4
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
+.++||++.+..+...+...+.. ..+.. .++|+||+|+|||++|+++|+.+. ..+..++......
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~----~~~~~----~~ll~GppG~GKT~la~~ia~~l~---~~~~~~~~~~~~~---- 89 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR----GEALD----HVLLYGPPGLGKTTLANIIANEMG---VNIRITSGPALEK---- 89 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc----CCCCC----cEEEECCCCccHHHHHHHHHHHhC---CCeEEEecccccC----
Confidence 45799999999988888765431 11112 699999999999999999999883 2333333221100
Q ss_pred CCCccccccccccccccccchHHHHHHHHHh-CCCeEEEEccccccCHHHHHHHHHHHhCCee
Q 002758 558 PPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGKL 619 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~-~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l 619 (884)
. +.+...+.. ....|||||||+.++...++.|..+|++.++
T Consensus 90 -------------~--------~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~ 131 (328)
T PRK00080 90 -------------P--------GDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRL 131 (328)
T ss_pred -------------h--------HHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcce
Confidence 0 112222221 3468999999999999999999999997643
No 59
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.24 E-value=2.6e-10 Score=132.09 Aligned_cols=226 Identities=15% Similarity=0.158 Sum_probs=147.6
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 558 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~ 558 (884)
.++|+..++..+...+..... .+..+++.|++|+||+.+|++++........+|+.+||.....
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~----- 207 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIAL-----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE----- 207 (457)
T ss_pred ceecccHHHhHHHHHHHHHcC-----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-----
Confidence 488998888887777666533 1347999999999999999999998777788999999985422
Q ss_pred CCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEe
Q 002758 559 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 637 (884)
Q Consensus 559 s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlT 637 (884)
.++...++|+..+ |.|... .-.+.+....+++|||||||.+++.+|..|+++|+++.+....+.+..-.++.||+|
T Consensus 208 -~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~ 284 (457)
T PRK11361 208 -SLLESELFGHEKGAFTGAQT--LRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAA 284 (457)
T ss_pred -HHHHHHhcCCCCCCCCCCCC--CCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEe
Confidence 1111122333222 111100 001122334468999999999999999999999999987653332222346778888
Q ss_pred cCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCc
Q 002758 638 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 717 (884)
Q Consensus 638 SN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~ 717 (884)
|+..-.. + +
T Consensus 285 t~~~l~~----------------~-----------~-------------------------------------------- 293 (457)
T PRK11361 285 TNRDLQA----------------M-----------V-------------------------------------------- 293 (457)
T ss_pred CCCCHHH----------------H-----------H--------------------------------------------
Confidence 8741000 0 0
Q ss_pred hhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhccccee-eecCCCC--HHHHHHHHHHHH
Q 002758 718 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAFN--FDALAEKILKDI 794 (884)
Q Consensus 718 ~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~I-VvFkPLd--~e~L~eIi~~~L 794 (884)
....|.++++.++..+ |...||. .++|..++...+
T Consensus 294 ------------------------------------------~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l 331 (457)
T PRK11361 294 ------------------------------------------KEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFL 331 (457)
T ss_pred ------------------------------------------HcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHH
Confidence 0125666778887544 4445554 256666666666
Q ss_pred HHHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 795 NASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 795 ~~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
.+...+. + .-.+.+++++++.|..+.|. |+ |.|++.|+..+.
T Consensus 332 ~~~~~~~-~-~~~~~~~~~a~~~L~~~~wp--gNv~eL~~~~~~~~~ 374 (457)
T PRK11361 332 QKFSSEN-Q-RDIIDIDPMAMSLLTAWSWP--GNIRELSNVIERAVV 374 (457)
T ss_pred HHHHHHc-C-CCCCCcCHHHHHHHHcCCCC--CcHHHHHHHHHHHHH
Confidence 6654332 1 12357999999999999996 54 788888887664
No 60
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.1e-10 Score=136.14 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=82.1
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCC----cceEEec-cCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK----ENFICAD-LCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~----~~fi~id-~s~~~ 552 (884)
+.|+||+.++..|.+++...+. .-.+||+||+|+|||++|+.||+.++... .++-.+. |....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri------------~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRV------------APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCC------------CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 4578999999888888764322 11699999999999999999999997431 1111100 00000
Q ss_pred CCCCCCCCccccccccccccccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 553 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
. ..+.+ ++ .+.+.. .++...+..|.+.+.. ..+.||||||+|+++...++.|+++||+..
T Consensus 84 ~-g~hpD-v~--eId~a~--~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~---------- 147 (624)
T PRK14959 84 Q-GMHVD-VV--EIDGAS--NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP---------- 147 (624)
T ss_pred c-CCCCc-eE--EEeccc--ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC----------
Confidence 0 00100 00 000100 1122223444444443 346899999999999999999999999731
Q ss_pred cCceEEEEecC
Q 002758 629 VSNAIFVTASS 639 (884)
Q Consensus 629 ~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 148 -~~~ifILaTt 157 (624)
T PRK14959 148 -ARVTFVLATT 157 (624)
T ss_pred -CCEEEEEecC
Confidence 2577888776
No 61
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.6e-10 Score=135.94 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=82.8
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc---------ceEEe-c
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE---------NFICA-D 547 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~---------~fi~i-d 547 (884)
+.|+||++++..|.+++...+. +-.+||+||.|+|||++|++||+.++.... ++-.+ .
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl------------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~ 83 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRL------------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQA 83 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHH
Confidence 4579999999988888775432 125899999999999999999999974211 10000 0
Q ss_pred cCCCCCCCCCCCCcccccccccccc-ccccchHHHHHHHHHhCC----CeEEEEccccccCHHHHHHHHHHHhCCeeeCC
Q 002758 548 LCPQDGEMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKP----LSVVYLENVDKADVHVQNSLSKAIQTGKLPDS 622 (884)
Q Consensus 548 ~s~~~~e~~~~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p----~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds 622 (884)
|...+. ..+ +.|...+.. .++...+..+.+.+...| +.|++|||+|.++...+|.|++.||+..
T Consensus 84 C~~i~~-g~h------~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP---- 152 (618)
T PRK14951 84 CRDIDS-GRF------VDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP---- 152 (618)
T ss_pred HHHHHc-CCC------CceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC----
Confidence 111100 001 111111110 122222334444444333 6899999999999999999999999731
Q ss_pred CCeEeecCceEEEEecC
Q 002758 623 YGREVSVSNAIFVTASS 639 (884)
Q Consensus 623 ~Gr~V~~~naI~IlTSN 639 (884)
.+++|||+|+
T Consensus 153 -------~~~~fIL~Tt 162 (618)
T PRK14951 153 -------EYLKFVLATT 162 (618)
T ss_pred -------CCeEEEEEEC
Confidence 2567888775
No 62
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.4e-10 Score=134.43 Aligned_cols=135 Identities=14% Similarity=0.153 Sum_probs=82.3
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEEec-cCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFICAD-LCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~id-~s~~~ 552 (884)
+.|+||+++++.|..++...+. +-.+||+||+|+|||++|++||+.++.... ++-.+. |....
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRI------------NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhh
Confidence 4689999999998888764322 125899999999999999999999975321 111110 00000
Q ss_pred CCCCCCCCccccccccccccccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 553 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
...+....++ .+-+. ..+|...+..+.+.+.. .++.||+|||+|.++...++.|++.||+-.
T Consensus 81 ~~~~~~~dvi--eidaa--s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp---------- 146 (584)
T PRK14952 81 PNGPGSIDVV--ELDAA--SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP---------- 146 (584)
T ss_pred cccCCCceEE--Eeccc--cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC----------
Confidence 0000000011 00010 01122222344444332 457899999999999999999999999721
Q ss_pred cCceEEEEecC
Q 002758 629 VSNAIFVTASS 639 (884)
Q Consensus 629 ~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 147 -~~~~fIL~tt 156 (584)
T PRK14952 147 -EHLIFIFATT 156 (584)
T ss_pred -CCeEEEEEeC
Confidence 3677888775
No 63
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.8e-10 Score=131.36 Aligned_cols=132 Identities=11% Similarity=0.056 Sum_probs=80.8
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEEe-ccCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFICA-DLCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~i-d~s~~~ 552 (884)
+.|+||+.+++.+.+++...+. +-.+||+||+|+|||++|+.||+.+.-... +.-.+ .|-...
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri------------~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~ 80 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKI------------PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIK 80 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHh
Confidence 4579999999888877664322 126999999999999999999998742211 11000 000000
Q ss_pred CCCCCCCCcccccccccc-ccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 553 GEMNNPPKFYHQVVGGDS-VQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~-~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
. ..+ +.+...+ ...+|..-+..+.+.+... .+.|++|||+|.++...++.|++.||+-.
T Consensus 81 ~-~~~------~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp--------- 144 (491)
T PRK14964 81 N-SNH------PDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA--------- 144 (491)
T ss_pred c-cCC------CCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC---------
Confidence 0 000 0110000 0011222233445555443 35799999999999999999999999732
Q ss_pred ecCceEEEEecC
Q 002758 628 SVSNAIFVTASS 639 (884)
Q Consensus 628 ~~~naI~IlTSN 639 (884)
..++||++|+
T Consensus 145 --~~v~fIlatt 154 (491)
T PRK14964 145 --PHVKFILATT 154 (491)
T ss_pred --CCeEEEEEeC
Confidence 2577888875
No 64
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=2.7e-10 Score=136.08 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=82.2
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCC----cceEEec-cCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK----ENFICAD-LCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~----~~fi~id-~s~~~ 552 (884)
+.|+||+.++..|..++...+. .-.+||+||+|+|||++|++||+.++... .++..+. |....
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl------------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRL------------HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 5689999999988888775432 12589999999999999999999997532 1111110 00000
Q ss_pred CCCCCCCCcccccccccccc-ccccchHHHHHHHHH----hCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 553 GEMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELL----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~----~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
. ..+ +.+...+.. .++...+..+.+.+. ..++.|+||||+|+++...+|.|++.||+.-
T Consensus 84 ~-g~~------~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp--------- 147 (647)
T PRK07994 84 Q-GRF------VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP--------- 147 (647)
T ss_pred c-CCC------CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC---------
Confidence 0 000 111100000 011111233444433 3457899999999999999999999999731
Q ss_pred ecCceEEEEecC
Q 002758 628 SVSNAIFVTASS 639 (884)
Q Consensus 628 ~~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 148 --~~v~FIL~Tt 157 (647)
T PRK07994 148 --EHVKFLLATT 157 (647)
T ss_pred --CCeEEEEecC
Confidence 3567888776
No 65
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.8e-10 Score=131.47 Aligned_cols=132 Identities=19% Similarity=0.171 Sum_probs=78.8
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcc----eEEeccC-CCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN----FICADLC-PQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~----fi~id~s-~~~ 552 (884)
+.|+||++++..|..++...+. +-.+||+||+|+|||++|+++|+.+...... +..++.. ...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l------------~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSI------------SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 4589999998887776654321 1259999999999999999999998653211 1111000 000
Q ss_pred CCCCCCCCccccccccccc-cccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 553 GEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~-g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
. ..+ +.+...+. ..+|...+..+.+.+... .+.||+|||+|.+....|+.|++.|++. .
T Consensus 82 ~-g~~------~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p-----~---- 145 (472)
T PRK14962 82 E-GTF------MDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP-----P---- 145 (472)
T ss_pred c-CCC------CccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC-----C----
Confidence 0 000 00000000 011221223444444433 3579999999999999999999999962 1
Q ss_pred ecCceEEEEecC
Q 002758 628 SVSNAIFVTASS 639 (884)
Q Consensus 628 ~~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 146 --~~vv~Ilatt 155 (472)
T PRK14962 146 --SHVVFVLATT 155 (472)
T ss_pred --CcEEEEEEeC
Confidence 2466777665
No 66
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.19 E-value=3e-10 Score=123.95 Aligned_cols=140 Identities=14% Similarity=0.105 Sum_probs=99.1
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
+.+++++..++.+...-.+... -|..+|+.|.+|+||..+|++-+-..-....+|+.++|+....+ .
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~Am-----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~--~ 270 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKLAM-----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED--A 270 (511)
T ss_pred HHHhhccHHHHHHHHHHHHhhc-----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh--H
Confidence 3568888777766554443322 23479999999999999999988777778899999999954321 1
Q ss_pred CCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEe
Q 002758 558 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 637 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlT 637 (884)
. ..+++||.+|-.|+ .+.+.. ...+-||||||..|+|..|..|++.+.+|.|+.-.+..--.-|+.||.|
T Consensus 271 a----EsElFG~apg~~gk--~GffE~----AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIca 340 (511)
T COG3283 271 A----ESELFGHAPGDEGK--KGFFEQ----ANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 340 (511)
T ss_pred h----HHHHhcCCCCCCCc--cchhhh----ccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEec
Confidence 1 12445665542222 123322 2357799999999999999999999999999986554334457889988
Q ss_pred cCC
Q 002758 638 SSF 640 (884)
Q Consensus 638 SN~ 640 (884)
|..
T Consensus 341 tq~ 343 (511)
T COG3283 341 TQV 343 (511)
T ss_pred ccc
Confidence 853
No 67
>PRK15115 response regulator GlrR; Provisional
Probab=99.19 E-value=4.4e-10 Score=129.84 Aligned_cols=226 Identities=12% Similarity=0.121 Sum_probs=143.0
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 558 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~ 558 (884)
.++|+...+..+...+.... +.+.++++.|++|+||+.+|++|+........+|+.+||.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a-----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~----- 198 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA-----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE----- 198 (444)
T ss_pred cccccCHHHHHHHHHHHhhc-----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-----
Confidence 46777766655544443321 12347999999999999999999998877778999999996432
Q ss_pred CCcccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEe
Q 002758 559 PKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 637 (884)
Q Consensus 559 s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlT 637 (884)
.++...++|+..+ |.|.. ....+.+.....++|||||||.+++..|..|+++|++|.+....+....-.++.+|+|
T Consensus 199 -~~~~~~lfg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~ 275 (444)
T PRK15115 199 -QLLESELFGHARGAFTGAV--SNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISA 275 (444)
T ss_pred -HHHHHHhcCCCcCCCCCCc--cCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEe
Confidence 1111122233222 11110 0001112233457999999999999999999999999987643332222236778888
Q ss_pred cCCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCc
Q 002758 638 SSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHD 717 (884)
Q Consensus 638 SN~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~ 717 (884)
|+.-.. .
T Consensus 276 ~~~~l~-----------------------------------------------------~-------------------- 282 (444)
T PRK15115 276 THRDLP-----------------------------------------------------K-------------------- 282 (444)
T ss_pred CCCCHH-----------------------------------------------------H--------------------
Confidence 873000 0
Q ss_pred hhHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhccccee-eecCCCCH--HHHHHHHHHHH
Q 002758 718 TSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAFNF--DALAEKILKDI 794 (884)
Q Consensus 718 ~~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~I-VvFkPLd~--e~L~eIi~~~L 794 (884)
. -....|.++|+.++..+ |...||.. ++|..++...+
T Consensus 283 ---~-------------------------------------~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l 322 (444)
T PRK15115 283 ---A-------------------------------------MARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLL 322 (444)
T ss_pred ---H-------------------------------------HHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHH
Confidence 0 00125777888887654 44555533 56776666666
Q ss_pred HHHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 795 NASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 795 ~~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
.+...+. + .....++++|++.|..+.|. |+ |.|++.|+..+.
T Consensus 323 ~~~~~~~-~-~~~~~~~~~a~~~L~~~~Wp--gNvreL~~~i~~~~~ 365 (444)
T PRK15115 323 RQAAERH-K-PFVRAFSTDAMKRLMTASWP--GNVRQLVNVIEQCVA 365 (444)
T ss_pred HHHHHHh-C-CCCCCcCHHHHHHHHhCCCC--ChHHHHHHHHHHHHH
Confidence 6643332 1 12346999999999999997 55 788888887654
No 68
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.19 E-value=4.3e-10 Score=136.65 Aligned_cols=63 Identities=14% Similarity=0.271 Sum_probs=48.5
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q 002758 774 KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLV 840 (884)
Q Consensus 774 ~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~ 840 (884)
.+|.|.||+.+++..++.+.+.+....+ + ...+.++++++++|+..+ +...|.+.+.++..+.
T Consensus 161 ~v~~l~pLs~edi~~IL~~~l~~~~~~~-g-~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 161 RLFRLKSLSDEDLHQLLKRALQDKERGY-G-DRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVE 223 (725)
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHhhc-C-CcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 3688999999999999999887643322 1 235789999999999975 3356888888887653
No 69
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=4.4e-10 Score=134.14 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=81.3
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCC-CCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG-EMN 556 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~-e~~ 556 (884)
..|+||+++++.|..++...+. .-.+||+||+|+|||++|++||+.++..... ....|..... ...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl------------~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~-~~~pCg~C~sCr~i 82 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRL------------HHAYLLTGTRGVGKTTIARILAKSLNCENAQ-HGEPCGVCQSCTQI 82 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCCCCcccHHHHHH
Confidence 4689999999999888775322 1259999999999999999999998754210 0000110000 000
Q ss_pred CCCCcccccccccc-ccccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCc
Q 002758 557 NPPKFYHQVVGGDS-VQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSN 631 (884)
Q Consensus 557 ~~s~L~p~gy~G~~-~g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~n 631 (884)
..... +.+...+ ...++...+..+.+.+.. ..+.||||||+|+++...++.|++.||+-. .+
T Consensus 83 ~~g~~--~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp-----------~~ 149 (709)
T PRK08691 83 DAGRY--VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP-----------EH 149 (709)
T ss_pred hccCc--cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC-----------CC
Confidence 00000 0000000 001122122333333322 346899999999999999999999999621 25
Q ss_pred eEEEEecC
Q 002758 632 AIFVTASS 639 (884)
Q Consensus 632 aI~IlTSN 639 (884)
++|||+|+
T Consensus 150 v~fILaTt 157 (709)
T PRK08691 150 VKFILATT 157 (709)
T ss_pred cEEEEEeC
Confidence 67888876
No 70
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=8.3e-10 Score=131.31 Aligned_cols=133 Identities=15% Similarity=0.143 Sum_probs=83.1
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEEecc-CCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFICADL-CPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~id~-s~~~ 552 (884)
+.|+||++++..+..++...+. .-.+||+||+|+|||++|+.+|+.+..... ++-.++. -...
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~------------~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKI------------SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHh
Confidence 5689999999998888775332 125999999999999999999999874321 1111110 0000
Q ss_pred CCCCCCCCccccccccccccccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 553 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
. ..+.+ ++ .+-+. ..++...++.+.+.+.. ..+.||+|||+|++....++.|++.||+..
T Consensus 84 ~-g~~~d-v~--eidaa--s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp---------- 147 (559)
T PRK05563 84 N-GSLMD-VI--EIDAA--SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP---------- 147 (559)
T ss_pred c-CCCCC-eE--Eeecc--ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC----------
Confidence 0 00000 00 00000 00122223455555543 346899999999999999999999999741
Q ss_pred cCceEEEEecC
Q 002758 629 VSNAIFVTASS 639 (884)
Q Consensus 629 ~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 148 -~~~ifIlatt 157 (559)
T PRK05563 148 -AHVIFILATT 157 (559)
T ss_pred -CCeEEEEEeC
Confidence 3578888775
No 71
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.17 E-value=2.7e-10 Score=122.75 Aligned_cols=124 Identities=17% Similarity=0.318 Sum_probs=82.5
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc---ceEEeccCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE---NFICADLCPQDGE 554 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~---~fi~id~s~~~~e 554 (884)
+.+.||+.++..+.+++.+ +-+ + ++||+||+|||||..|+++|+.+|+.+. .+...+.+...+
T Consensus 36 de~~gQe~vV~~L~~a~~~-~~l--------p----~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG- 101 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR-RIL--------P----HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG- 101 (346)
T ss_pred HhhcchHHHHHHHHHHHhh-cCC--------c----eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc-
Confidence 4579999999999999887 321 2 7999999999999999999999998321 111112111100
Q ss_pred CCCCCCccccccccccccccccchHHHHHHHH------HhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 555 MNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL------LKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 555 ~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal------~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
. ++++... +.+ ..+.... ...|+.||+|||.|-|..+.|+.|.+.||+- .
T Consensus 102 -i---svvr~Ki---------k~f-akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~--s-------- 157 (346)
T KOG0989|consen 102 -I---SVVREKI---------KNF-AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF--S-------- 157 (346)
T ss_pred -c---cchhhhh---------cCH-HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc--c--------
Confidence 0 0100000 001 1222111 1245789999999999999999999999972 1
Q ss_pred cCceEEEEecCC
Q 002758 629 VSNAIFVTASSF 640 (884)
Q Consensus 629 ~~naI~IlTSN~ 640 (884)
+.+.||+.||-
T Consensus 158 -~~trFiLIcny 168 (346)
T KOG0989|consen 158 -RTTRFILICNY 168 (346)
T ss_pred -cceEEEEEcCC
Confidence 35779999985
No 72
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=1.4e-09 Score=127.42 Aligned_cols=132 Identities=17% Similarity=0.136 Sum_probs=81.1
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----c-eE----Eecc
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----N-FI----CADL 548 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~-fi----~id~ 548 (884)
..++||++++..+..++...+. .-.+||+||+|+|||++|++||+.+..... + +. +-.|
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri------------~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRL------------AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 3579999999988887765332 116999999999999999999999864321 0 00 0011
Q ss_pred CCCCCCCCCCCCccccccccccc-cccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCC
Q 002758 549 CPQDGEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY 623 (884)
Q Consensus 549 s~~~~e~~~~s~L~p~gy~G~~~-g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~ 623 (884)
..... ..+ +.+...+. ..++..-+..+.+.+... .+.||+|||++.++...++.|++.||+..
T Consensus 89 ~~i~~-~~h------~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp----- 156 (507)
T PRK06645 89 ISFNN-HNH------PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP----- 156 (507)
T ss_pred HHHhc-CCC------CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC-----
Confidence 11110 000 11110000 011222233444444433 46799999999999999999999999631
Q ss_pred CeEeecCceEEEEecC
Q 002758 624 GREVSVSNAIFVTASS 639 (884)
Q Consensus 624 Gr~V~~~naI~IlTSN 639 (884)
..++||++|+
T Consensus 157 ------~~~vfI~aTt 166 (507)
T PRK06645 157 ------PHIIFIFATT 166 (507)
T ss_pred ------CCEEEEEEeC
Confidence 2567888765
No 73
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.2e-09 Score=128.13 Aligned_cols=136 Identities=17% Similarity=0.114 Sum_probs=81.6
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
+.|+||++++..|..++...+. +-.+||+||+|+|||++|++||+.++...... ..|..... -..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l------------~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~--~~cg~C~s-c~~ 78 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRL------------GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDP--KPCGECES-CLA 78 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHHhccCCCC--CCCCcChh-hHH
Confidence 3589999999888888775322 12579999999999999999999986422110 01111000 000
Q ss_pred CCCcccccccccc-ccccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCce
Q 002758 558 PPKFYHQVVGGDS-VQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNA 632 (884)
Q Consensus 558 ~s~L~p~gy~G~~-~g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~na 632 (884)
.....++.+...+ .+.++...+..+.+.+.. ..+.||||||+|.+....++.|++.|++.. .++
T Consensus 79 i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-----------~~t 147 (504)
T PRK14963 79 VRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-----------EHV 147 (504)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-----------CCE
Confidence 0000011111000 011222223445454443 345799999999999999999999999731 256
Q ss_pred EEEEecC
Q 002758 633 IFVTASS 639 (884)
Q Consensus 633 I~IlTSN 639 (884)
+||++++
T Consensus 148 ~~Il~t~ 154 (504)
T PRK14963 148 IFILATT 154 (504)
T ss_pred EEEEEcC
Confidence 7888775
No 74
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.15 E-value=4.5e-10 Score=118.26 Aligned_cols=117 Identities=20% Similarity=0.165 Sum_probs=74.7
Q ss_pred hhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCC
Q 002758 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 555 (884)
Q Consensus 476 L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~ 555 (884)
-.+.|+||++|...- +.|.... .+|.+-..=.+-.+||+||+|+|||.||+|||... ..+|+.+.....-+
T Consensus 119 t~ddViGqEeAK~kc-rli~~yL---enPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~l~vkat~liG-- 189 (368)
T COG1223 119 TLDDVIGQEEAKRKC-RLIMEYL---ENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATELIG-- 189 (368)
T ss_pred cHhhhhchHHHHHHH-HHHHHHh---hChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCceEEechHHHHH--
Confidence 346799999997552 2232221 12211000112379999999999999999999865 67888877553211
Q ss_pred CCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCH------------HHHHHHHHHHh
Q 002758 556 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV------------HVQNSLSKAIQ 615 (884)
Q Consensus 556 ~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~------------~vq~~Llq~le 615 (884)
+|+|... ..+..+++..++...+||||||+|.... ++.|+||.-|+
T Consensus 190 ---------ehVGdga-----r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD 247 (368)
T COG1223 190 ---------EHVGDGA-----RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD 247 (368)
T ss_pred ---------HHhhhHH-----HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc
Confidence 3344321 2345677777777789999999996532 45666666665
No 75
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1e-09 Score=131.07 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=83.3
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEEe-ccCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFICA-DLCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~i-d~s~~~ 552 (884)
+.|+||++++..|..++...+. +-.+||+||+|+|||++|++||+.++.... ++-.+ .|....
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~------------~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRV------------AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh
Confidence 4689999999998888765322 125899999999999999999999975321 11100 000000
Q ss_pred CCCCCCCCccccccccccccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 553 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
. ..+.+ ++ .+-|.. .++..-++.+.+.+... ++.|++|||+|+++...++.|++.||+-.
T Consensus 84 ~-g~~~d-~~--eid~~s--~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp---------- 147 (576)
T PRK14965 84 E-GRSVD-VF--EIDGAS--NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP---------- 147 (576)
T ss_pred c-CCCCC-ee--eeeccC--ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCC----------
Confidence 0 00111 00 000110 11111234455555443 46799999999999999999999999731
Q ss_pred cCceEEEEecC
Q 002758 629 VSNAIFVTASS 639 (884)
Q Consensus 629 ~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 148 -~~~~fIl~t~ 157 (576)
T PRK14965 148 -PHVKFIFATT 157 (576)
T ss_pred -CCeEEEEEeC
Confidence 3677888876
No 76
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=1.5e-09 Score=130.76 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=84.9
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCC-CCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG-EMN 556 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~-e~~ 556 (884)
+.|+||+.++..+..++...+. .-.+||+||+|+|||++|+++|+.++........-.|..+.. ...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl------------~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKI------------SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 4689999999998888875332 125899999999999999999999975432110001111000 000
Q ss_pred CCCCccccccc-cccccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCc
Q 002758 557 NPPKFYHQVVG-GDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSN 631 (884)
Q Consensus 557 ~~s~L~p~gy~-G~~~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~n 631 (884)
+ +.+. +...+.++...++.+.+.+... ++.|++|||+|.+....++.|++.||+.. ..
T Consensus 86 ~------~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP-----------~~ 148 (725)
T PRK07133 86 S------LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP-----------KH 148 (725)
T ss_pred C------CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC-----------Cc
Confidence 0 1111 0001112222345666666654 46799999999999999999999999741 25
Q ss_pred eEEEEecC
Q 002758 632 AIFVTASS 639 (884)
Q Consensus 632 aI~IlTSN 639 (884)
++||++|+
T Consensus 149 tifILaTt 156 (725)
T PRK07133 149 VIFILATT 156 (725)
T ss_pred eEEEEEcC
Confidence 67888774
No 77
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.6e-09 Score=127.98 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=81.9
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEEec-cCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFICAD-LCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~id-~s~~~ 552 (884)
+.|+||+++++.+..++...+. .-.+||+||+|+|||++|+.+|+.++.... ++-.++ |...+
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~ 83 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRL------------HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEID 83 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 4589999999998888775332 125899999999999999999999975321 111100 00000
Q ss_pred CCCCCCCCcccccccccccc-ccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 553 GEMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
. ..+ +.+...+.. .++...+..+.+.+... ++.|++|||+|+++...+|.|++.||+..
T Consensus 84 ~-~~~------~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp--------- 147 (527)
T PRK14969 84 S-GRF------VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP--------- 147 (527)
T ss_pred c-CCC------CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC---------
Confidence 0 000 111111100 11122223444444433 35799999999999999999999999731
Q ss_pred ecCceEEEEecC
Q 002758 628 SVSNAIFVTASS 639 (884)
Q Consensus 628 ~~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 148 --~~~~fIL~t~ 157 (527)
T PRK14969 148 --EHVKFILATT 157 (527)
T ss_pred --CCEEEEEEeC
Confidence 2567888775
No 78
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.11 E-value=5.7e-10 Score=134.04 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=76.2
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcC-------CCcceEEeccCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG-------GKENFICADLCPQ 551 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~g-------s~~~fi~id~s~~ 551 (884)
.++||+.++..+...+... . +..++|+||+|||||++|+++++.... ...+|+.+++...
T Consensus 155 ~iiGqs~~~~~l~~~ia~~--------~-----~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP--------F-----PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hceeCcHHHHHHHHHHhcC--------C-----CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 4789999998765554211 0 126999999999999999999887631 2467999998743
Q ss_pred CCCCCCCCCcccccccccccc--cccc-c------hHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeee
Q 002758 552 DGEMNNPPKFYHQVVGGDSVQ--FRGK-T------LADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 552 ~~e~~~~s~L~p~gy~G~~~g--~rgk-~------~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ 620 (884)
.. +...+. ..+.|.... +.+. . ..+...+.+....++||||||++.+++..|..|+++|+++++.
T Consensus 222 ~~---d~~~i~-~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~ 295 (615)
T TIGR02903 222 RW---DPREVT-NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVE 295 (615)
T ss_pred cC---CHHHHh-HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEE
Confidence 21 000000 001111000 0000 0 0000011122334679999999999999999999999987653
No 79
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=2.1e-09 Score=123.11 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=80.7
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEE---eccCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFIC---ADLCP 550 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~---id~s~ 550 (884)
+.|+||+.+++.|..++...+. +-.+||+||+|+|||++|+++|+.++.... .+.. --|..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~------------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRV------------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCc------------ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 4689999999988777764322 125999999999999999999999975320 0000 00110
Q ss_pred C------CCCCCCCCCccccccccccc-cccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCee
Q 002758 551 Q------DGEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKL 619 (884)
Q Consensus 551 ~------~~e~~~~s~L~p~gy~G~~~-g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l 619 (884)
+ .. ..+ +.+.-.+. ..++...+..+.+.+... ++.||||||+|+++...++.|++.||+..
T Consensus 84 c~~c~~~~~-~~~------~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~- 155 (397)
T PRK14955 84 CESCRDFDA-GTS------LNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP- 155 (397)
T ss_pred CHHHHHHhc-CCC------CCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC-
Confidence 0 00 001 11110000 011111223444555443 46799999999999999999999999631
Q ss_pred eCCCCeEeecCceEEEEecC
Q 002758 620 PDSYGREVSVSNAIFVTASS 639 (884)
Q Consensus 620 ~ds~Gr~V~~~naI~IlTSN 639 (884)
..++||++++
T Consensus 156 ----------~~t~~Il~t~ 165 (397)
T PRK14955 156 ----------PHAIFIFATT 165 (397)
T ss_pred ----------CCeEEEEEeC
Confidence 2466777664
No 80
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.11 E-value=1.6e-09 Score=126.44 Aligned_cols=71 Identities=18% Similarity=0.118 Sum_probs=51.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
-+||+||+|||||.+|++||..+ +.+|+.++++.... +|+|..+. .+..+....+....+|
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~~-----------~~vGese~-----~l~~~f~~A~~~~P~I 321 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLFG-----------GIVGESES-----RMRQMIRIAEALSPCI 321 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhcc-----------cccChHHH-----HHHHHHHHHHhcCCcE
Confidence 49999999999999999999987 57899999873211 34443332 1234444445556799
Q ss_pred EEEccccccC
Q 002758 594 VYLENVDKAD 603 (884)
Q Consensus 594 IlLDEIEKa~ 603 (884)
|||||||++-
T Consensus 322 L~IDEID~~~ 331 (489)
T CHL00195 322 LWIDEIDKAF 331 (489)
T ss_pred EEehhhhhhh
Confidence 9999999763
No 81
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=3e-09 Score=124.97 Aligned_cols=132 Identities=16% Similarity=0.124 Sum_probs=80.8
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEEe-ccCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFICA-DLCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~i-d~s~~~ 552 (884)
+.|+||++++..+..++...+. +-.+||+||+|+|||++|++||+.++.... +...+ .|....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl------------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRL------------AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCC------------CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 4589999999888888764322 125899999999999999999999975321 11111 011000
Q ss_pred CCCCCCCCccccccc-cccccccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 553 GEMNNPPKFYHQVVG-GDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~-G~~~g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
. .. ++.+. +.....+|...+..+.+.... .++.||+|||+|.++...++.|++.||+- .
T Consensus 82 ~-~~------h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp--p------- 145 (535)
T PRK08451 82 E-NR------HIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP--P------- 145 (535)
T ss_pred h-cC------CCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc--C-------
Confidence 0 00 01111 000001222122233333222 34689999999999999999999999973 1
Q ss_pred ecCceEEEEecC
Q 002758 628 SVSNAIFVTASS 639 (884)
Q Consensus 628 ~~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 146 --~~t~FIL~tt 155 (535)
T PRK08451 146 --SYVKFILATT 155 (535)
T ss_pred --CceEEEEEEC
Confidence 2567888775
No 82
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=2.7e-09 Score=123.95 Aligned_cols=133 Identities=18% Similarity=0.201 Sum_probs=82.2
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc-----ceE-EeccCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE-----NFI-CADLCPQ 551 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~-----~fi-~id~s~~ 551 (884)
+.|+||+.++..+..++...+. +-.+||+||+|+|||++|+++|+.++.... +.. +.+|...
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i------------~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRA------------AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 4689999999988888764322 126999999999999999999999976421 110 0111111
Q ss_pred CCCCCCCCCccccccccccccccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 552 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 552 ~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
.. ..+.+ ++ .+.|. ..+|...+..+.+.+.. ..+.||+|||+|++....++.|++.||+..
T Consensus 85 ~~-~~~~d-~~--~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~--------- 149 (451)
T PRK06305 85 SS-GTSLD-VL--EIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP--------- 149 (451)
T ss_pred hc-CCCCc-eE--Eeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC---------
Confidence 10 00100 00 00010 11222222334444432 457899999999999999999999999731
Q ss_pred ecCceEEEEecC
Q 002758 628 SVSNAIFVTASS 639 (884)
Q Consensus 628 ~~~naI~IlTSN 639 (884)
.+++||++++
T Consensus 150 --~~~~~Il~t~ 159 (451)
T PRK06305 150 --QHVKFFLATT 159 (451)
T ss_pred --CCceEEEEeC
Confidence 2567888775
No 83
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=2.4e-09 Score=126.62 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=83.0
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcce--EEeccCC---CC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF--ICADLCP---QD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~f--i~id~s~---~~ 552 (884)
..|+||+.++..+..++...+. + -.+||+||+|+|||++|+++|+.++.....- .+-.|.. ..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl-------~-----hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKL-------T-----HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------C-----ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 4678999999988887754322 1 1599999999999999999999997432110 0011110 00
Q ss_pred CCCCCCCCccccccccccc-cccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 553 GEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~-g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
. .. ++.+...+. ..++...++.+.+.+... ++.|++|||+|.++...++.|++.||+..
T Consensus 84 ~-~~------h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp--------- 147 (605)
T PRK05896 84 T-NQ------SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP--------- 147 (605)
T ss_pred c-CC------CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC---------
Confidence 0 00 111111110 012222234455555443 35799999999999999999999999741
Q ss_pred ecCceEEEEecC
Q 002758 628 SVSNAIFVTASS 639 (884)
Q Consensus 628 ~~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 148 --~~tvfIL~Tt 157 (605)
T PRK05896 148 --KHVVFIFATT 157 (605)
T ss_pred --CcEEEEEECC
Confidence 2577888775
No 84
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=99.09 E-value=3.7e-10 Score=108.38 Aligned_cols=111 Identities=18% Similarity=0.248 Sum_probs=81.6
Q ss_pred hHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCC--CcceEE
Q 002758 468 NWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG--KENFIC 545 (884)
Q Consensus 468 ~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs--~~~fi~ 545 (884)
++..|++.|.++|+||+-|++.|..+|...... ..+ ++++++.|+||+||||+++++.||+.+|.. ..++|+
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p-----~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~ 88 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNP-----RKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVH 88 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCC-----CCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCcee
Confidence 578999999999999999999999999998653 233 456799999999999999999999999965 567776
Q ss_pred eccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEE
Q 002758 546 ADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYL 596 (884)
Q Consensus 546 id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlL 596 (884)
.-++... +.+.+.+ ..|.+ ....++.+.+...|+++++|
T Consensus 89 ~f~~~~h--FP~~~~v-----~~Yk~-----~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 89 QFIATHH--FPHNSNV-----DEYKE-----QLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred eeccccc--CCCchHH-----HHHHH-----HHHHHHHHHHHhCCcCeeeC
Confidence 5544221 1111110 01111 13467778888899988875
No 85
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.09 E-value=3.1e-10 Score=132.36 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=85.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcccccccccccc-ccccchHHHHHHHHHhCC
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKP 590 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p 590 (884)
++.+++.|.+|+||..+|++|.+..- ...+||.++|..+.. .++..+++||..| |.|... .-....+...+
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~------~liesELFGy~~GafTga~~-kG~~g~~~~A~ 407 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPE------ALIESELFGYVAGAFTGARR-KGYKGKLEQAD 407 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchH------HhhhHHHhccCccccccchh-ccccccceecC
Confidence 45799999999999999999999876 778999999996542 2333455566554 221100 00112233345
Q ss_pred CeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCe--EeecCceEEEEecCC
Q 002758 591 LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGR--EVSVSNAIFVTASSF 640 (884)
Q Consensus 591 ~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr--~V~~~naI~IlTSN~ 640 (884)
.+.+|+|||..|+...|..|+++|++|.++--.|+ +||++ ||.+|+.
T Consensus 408 gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdir---vi~ath~ 456 (606)
T COG3284 408 GGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIR---VIAATHR 456 (606)
T ss_pred CCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEE---EEeccCc
Confidence 67899999999999999999999999999876664 44444 8887763
No 86
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.09 E-value=4.4e-09 Score=117.77 Aligned_cols=136 Identities=15% Similarity=0.106 Sum_probs=80.5
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcc-eEEeccCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN-FICADLCPQDGEMN 556 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~-fi~id~s~~~~e~~ 556 (884)
+.|+||+++++.+...+...+. +-.+||+||+|+|||++|+++|+.+...... +- .|..+.. ..
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~------------~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~--~c~~c~~-c~ 78 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRI------------AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGE--PCNECES-CK 78 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--CCCCCHH-HH
Confidence 4689999999998887764321 1269999999999999999999998754210 00 1110000 00
Q ss_pred CCCCccccccccccc-cccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCc
Q 002758 557 NPPKFYHQVVGGDSV-QFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSN 631 (884)
Q Consensus 557 ~~s~L~p~gy~G~~~-g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~n 631 (884)
....-.++.+...+. +..+......+.+.+... ++.||+|||+|.+....++.|++.+++.. .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~-----------~~ 147 (355)
T TIGR02397 79 EINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-----------EH 147 (355)
T ss_pred HHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc-----------cc
Confidence 000000001100000 001111123455555443 35799999999999999999999998621 25
Q ss_pred eEEEEecC
Q 002758 632 AIFVTASS 639 (884)
Q Consensus 632 aI~IlTSN 639 (884)
++||++++
T Consensus 148 ~~lIl~~~ 155 (355)
T TIGR02397 148 VVFILATT 155 (355)
T ss_pred eeEEEEeC
Confidence 67888765
No 87
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=3.3e-09 Score=126.69 Aligned_cols=132 Identities=16% Similarity=0.093 Sum_probs=83.4
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcce---EEec-cCC---
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF---ICAD-LCP--- 550 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~f---i~id-~s~--- 550 (884)
+.|+||+.+++.|.+++...+. +-.+||+||+|+|||++|++||+.++.....- ..++ |..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri------------~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRI------------AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 4689999999999988875332 12699999999999999999999987432100 0011 110
Q ss_pred ---CCCCCCCCCCcccccccccc-ccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCC
Q 002758 551 ---QDGEMNNPPKFYHQVVGGDS-VQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS 622 (884)
Q Consensus 551 ---~~~e~~~~s~L~p~gy~G~~-~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds 622 (884)
... .. ++.+.-.+ ...+|...+..+.+.+... ++.||+|||+|.++...++.|++.||+--
T Consensus 92 C~~i~~-g~------h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp---- 160 (598)
T PRK09111 92 CQAIME-GR------HVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPP---- 160 (598)
T ss_pred HHHHhc-CC------CCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCC----
Confidence 000 01 11111100 0112222234455555543 46899999999999999999999999721
Q ss_pred CCeEeecCceEEEEecC
Q 002758 623 YGREVSVSNAIFVTASS 639 (884)
Q Consensus 623 ~Gr~V~~~naI~IlTSN 639 (884)
.+++|||+++
T Consensus 161 -------~~~~fIl~tt 170 (598)
T PRK09111 161 -------PHVKFIFATT 170 (598)
T ss_pred -------CCeEEEEEeC
Confidence 2567888775
No 88
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=4.8e-09 Score=125.57 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=81.5
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc---c-eEE---eccCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE---N-FIC---ADLCP 550 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~---~-fi~---id~s~ 550 (884)
+.|+||+.++..|.+++...+. +-.+||+||+|+|||++|+.||+.++.... + +.. -.|..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri------------~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~ 83 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRV------------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE 83 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc
Confidence 5689999999988887764332 125999999999999999999999975320 0 000 01111
Q ss_pred C------CCCCCCCCCccccccccccc-cccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCee
Q 002758 551 Q------DGEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKL 619 (884)
Q Consensus 551 ~------~~e~~~~s~L~p~gy~G~~~-g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l 619 (884)
+ +. ..+ +.|.-.+. ..++...+..+.+.+.. .++.||+|||+|++....++.|++.||+-.
T Consensus 84 C~sC~~~~~-g~~------~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp- 155 (620)
T PRK14954 84 CESCRDFDA-GTS------LNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP- 155 (620)
T ss_pred CHHHHHHhc-cCC------CCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC-
Confidence 0 00 011 11110010 11111223344444543 346899999999999999999999999731
Q ss_pred eCCCCeEeecCceEEEEecC
Q 002758 620 PDSYGREVSVSNAIFVTASS 639 (884)
Q Consensus 620 ~ds~Gr~V~~~naI~IlTSN 639 (884)
..++||++++
T Consensus 156 ----------~~tv~IL~t~ 165 (620)
T PRK14954 156 ----------PHAIFIFATT 165 (620)
T ss_pred ----------CCeEEEEEeC
Confidence 2467887764
No 89
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=5.1e-09 Score=122.60 Aligned_cols=133 Identities=17% Similarity=0.206 Sum_probs=82.5
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEE-eccCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFIC-ADLCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~-id~s~~~ 552 (884)
..|+||+.++..+..++...+. .-.+||+||+|+|||++|+.+|+.++.... ++-. .+|...+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i------------~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRV------------SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 4589999999988888865322 115899999999999999999999974211 1110 1111111
Q ss_pred CCCCCCCCccccccccccccccccchHHHHHHHHHhCC----CeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 553 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKP----LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p----~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
. ...+ .++ ..-+. .-+|...++.+.+.+...| +.|++|||+|++....++.|++.|++..
T Consensus 84 ~-g~~~-d~~--eidaa--s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp---------- 147 (486)
T PRK14953 84 K-GSFP-DLI--EIDAA--SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP---------- 147 (486)
T ss_pred c-CCCC-cEE--EEeCc--cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC----------
Confidence 0 0000 010 00000 0122222345666665544 5799999999999999999999999741
Q ss_pred cCceEEEEecC
Q 002758 629 VSNAIFVTASS 639 (884)
Q Consensus 629 ~~naI~IlTSN 639 (884)
.+++||++++
T Consensus 148 -~~~v~Il~tt 157 (486)
T PRK14953 148 -PRTIFILCTT 157 (486)
T ss_pred -CCeEEEEEEC
Confidence 2467777664
No 90
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=5.6e-09 Score=124.07 Aligned_cols=132 Identities=17% Similarity=0.132 Sum_probs=80.5
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEEe-ccCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFICA-DLCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~i-d~s~~~ 552 (884)
+.|+||+.++..+..++...+. .-.+||+||+|+|||++|++||+.++.... ++-.+ +|-...
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i------------~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKI------------ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 4689999999998888865322 126999999999999999999999975321 11110 000000
Q ss_pred CCCCCCCCccccccccccccc-cccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 553 GEMNNPPKFYHQVVGGDSVQF-RGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g~-rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
. ..+ +.+...+... .+...+..+.+.+.. .++.|++|||++.++...++.|++.||+..
T Consensus 84 ~-~~~------~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp--------- 147 (563)
T PRK06647 84 N-DNS------LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP--------- 147 (563)
T ss_pred c-CCC------CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC---------
Confidence 0 000 1111000000 111111223332232 456899999999999999999999999621
Q ss_pred ecCceEEEEecC
Q 002758 628 SVSNAIFVTASS 639 (884)
Q Consensus 628 ~~~naI~IlTSN 639 (884)
.+++||++++
T Consensus 148 --~~~vfI~~tt 157 (563)
T PRK06647 148 --PYIVFIFATT 157 (563)
T ss_pred --CCEEEEEecC
Confidence 2577888774
No 91
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=7.1e-09 Score=124.44 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=80.9
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCC------
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ------ 551 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~------ 551 (884)
+.|+||++++..|..++...+. +-.+||+||+|+|||++|+.+|+.++.....----.|..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l------------~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKL------------AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 5689999999998888764322 1259999999999999999999998632110000001100
Q ss_pred CCCCCCCCCccccccccccccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 552 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 552 ~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
.. ..+.+ ++ .+-+. +..+...+..+.+.+... .+.||+|||+|.+....++.|++.||+-.
T Consensus 85 ~~-~~~~n-~~--~ld~~--~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp--------- 149 (614)
T PRK14971 85 NE-QRSYN-IH--ELDAA--SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP--------- 149 (614)
T ss_pred hc-CCCCc-eE--Eeccc--ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC---------
Confidence 00 00000 00 00010 001111123333333433 36899999999999999999999999731
Q ss_pred ecCceEEEEecC
Q 002758 628 SVSNAIFVTASS 639 (884)
Q Consensus 628 ~~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 150 --~~tifIL~tt 159 (614)
T PRK14971 150 --SYAIFILATT 159 (614)
T ss_pred --CCeEEEEEeC
Confidence 2577888775
No 92
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.04 E-value=1.1e-09 Score=119.74 Aligned_cols=85 Identities=13% Similarity=0.211 Sum_probs=60.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHH----hC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL----KK 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~----~~ 589 (884)
.++|+||+|||||+||+.||..--.....||.+...... ... ..+.+..+-+ .+
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~-----------------t~d-----vR~ife~aq~~~~l~k 221 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK-----------------TND-----VRDIFEQAQNEKSLTK 221 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc-----------------hHH-----HHHHHHHHHHHHhhhc
Confidence 699999999999999999998764444456655433110 001 1122222221 24
Q ss_pred CCeEEEEccccccCHHHHHHHHHHHhCCeee
Q 002758 590 PLSVVYLENVDKADVHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 590 p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ 620 (884)
...|+|||||++.+...|+.|+..+|.|.++
T Consensus 222 rkTilFiDEiHRFNksQQD~fLP~VE~G~I~ 252 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQDTFLPHVENGDIT 252 (554)
T ss_pred ceeEEEeHHhhhhhhhhhhcccceeccCceE
Confidence 4689999999999999999999999998654
No 93
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.04 E-value=5.1e-09 Score=116.20 Aligned_cols=135 Identities=20% Similarity=0.240 Sum_probs=81.5
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCC--cceEEeccCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK--ENFICADLCPQDGEM 555 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~--~~fi~id~s~~~~e~ 555 (884)
+.++||++++..+..++...+ .+ +++|+||+|+|||++|+++++.+++.. .+++.++++.+....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~---------~~----~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN---------LP----HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG 81 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC---------Cc----eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc
Confidence 357899998888777664211 12 699999999999999999999998653 467888876421100
Q ss_pred CCCCCcc-ccccc---cccccccccchHHHHHHHH----Hh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCC
Q 002758 556 NNPPKFY-HQVVG---GDSVQFRGKTLADYVAWEL----LK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY 623 (884)
Q Consensus 556 ~~~s~L~-p~gy~---G~~~g~rgk~~l~~L~eal----~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~ 623 (884)
...+. ++.+. +.. .-.+....+.+.+.+ .. .+..||+|||++.++...++.|+++|+...
T Consensus 82 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~----- 153 (337)
T PRK12402 82 --KKYLVEDPRFAHFLGTD-KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS----- 153 (337)
T ss_pred --hhhhhcCcchhhhhhhh-hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc-----
Confidence 00000 01110 000 000000112222211 11 335799999999999999999999998631
Q ss_pred CeEeecCceEEEEecC
Q 002758 624 GREVSVSNAIFVTASS 639 (884)
Q Consensus 624 Gr~V~~~naI~IlTSN 639 (884)
.++.||++++
T Consensus 154 ------~~~~~Il~~~ 163 (337)
T PRK12402 154 ------RTCRFIIATR 163 (337)
T ss_pred ------CCCeEEEEeC
Confidence 1345777765
No 94
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.04 E-value=9.3e-09 Score=110.06 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=77.1
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 558 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~ 558 (884)
..+||+.+.+.+.-.|..++. +..... ++||+||||.|||+||..+|..+. .+ +++.-+ .
T Consensus 27 efiGQ~~vk~~L~ifI~AAk~----r~e~lD----HvLl~GPPGlGKTTLA~IIA~Emg---vn-~k~tsG------p-- 86 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAKK----RGEALD----HVLLFGPPGLGKTTLAHIIANELG---VN-LKITSG------P-- 86 (332)
T ss_pred HhcChHHHHHHHHHHHHHHHh----cCCCcC----eEEeeCCCCCcHHHHHHHHHHHhc---CC-eEeccc------c--
Confidence 469999999999888877654 223344 899999999999999999999983 11 111111 0
Q ss_pred CCccccccccccccccccchHHHHHHHHH-hCCCeEEEEccccccCHHHHHHHHHHHhCCeee
Q 002758 559 PKFYHQVVGGDSVQFRGKTLADYVAWELL-KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 559 s~L~p~gy~G~~~g~rgk~~l~~L~eal~-~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ 620 (884)
.| ... +.|+..+. -.++.|+|+|||+++.+.+-..|..+||+-++-
T Consensus 87 -~l-------eK~--------gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lD 133 (332)
T COG2255 87 -AL-------EKP--------GDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLD 133 (332)
T ss_pred -cc-------cCh--------hhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEE
Confidence 00 001 34555443 367899999999999999999999999987653
No 95
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6.3e-10 Score=122.04 Aligned_cols=129 Identities=21% Similarity=0.197 Sum_probs=93.6
Q ss_pred cCccchHHHHHHHHHHHHH--------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 479 KIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~--------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
.|.|=++.|++|.++|... ..|+..|+ | +||+||||||||.||+|+|... ...||++-.++
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPK---G-----VLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSE 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPK---G-----VLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSE 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCC---c-----eEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHH
Confidence 4677777788888887542 45665543 3 9999999999999999999875 77899988773
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccc-----------cCHHHHHHHHHHHhCCee
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDK-----------ADVHVQNSLSKAIQTGKL 619 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEK-----------a~~~vq~~Llq~le~G~l 619 (884)
.- +.|.|.. ...+..+.+..+.+..+||||||||. .+.+||..++++|..=.=
T Consensus 221 lV-----------qKYiGEG-----aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 221 LV-----------QKYIGEG-----ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred HH-----------HHHhccc-----hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 21 2444432 22455666666777789999999995 568999999999975221
Q ss_pred eCCCCeEeecCceEEEEecCC
Q 002758 620 PDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 620 ~ds~Gr~V~~~naI~IlTSN~ 640 (884)
-|.. .|+-|||+||.
T Consensus 285 FD~~------~nvKVI~ATNR 299 (406)
T COG1222 285 FDPR------GNVKVIMATNR 299 (406)
T ss_pred CCCC------CCeEEEEecCC
Confidence 2333 36779999995
No 96
>PRK06893 DNA replication initiation factor; Validated
Probab=99.03 E-value=5.8e-09 Score=110.73 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=45.2
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q 002758 774 KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLV 840 (884)
Q Consensus 774 ~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~ 840 (884)
.++.+.|++.+++.+++.+..... .+.+++++++||+...- ...|.+...|+.+..
T Consensus 154 ~~~~l~~pd~e~~~~iL~~~a~~~---------~l~l~~~v~~~L~~~~~--~d~r~l~~~l~~l~~ 209 (229)
T PRK06893 154 EIYQLNDLTDEQKIIVLQRNAYQR---------GIELSDEVANFLLKRLD--RDMHTLFDALDLLDK 209 (229)
T ss_pred CeeeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHhcc--CCHHHHHHHHHHHHH
Confidence 478899999999999998877532 37899999999999743 256889999988643
No 97
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.03 E-value=1.7e-09 Score=116.99 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccc
Q 002758 484 DEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYH 563 (884)
Q Consensus 484 ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p 563 (884)
...++.+.+.+..+... ...++|.||+|||||++|++||..+ +.+|+.++|.... ....++
T Consensus 4 t~~~~~l~~~~l~~l~~-----------g~~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~----~~~dll- 64 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKS-----------GYPVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAEL----TTSDLV- 64 (262)
T ss_pred CHHHHHHHHHHHHHHhc-----------CCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccC----CHHHHh-
Confidence 34555555555554331 1169999999999999999999866 5678888887421 111222
Q ss_pred ccccccccc-----c----------cccc-hHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCC---
Q 002758 564 QVVGGDSVQ-----F----------RGKT-LADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG--- 624 (884)
Q Consensus 564 ~gy~G~~~g-----~----------rgk~-~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~G--- 624 (884)
..+.++... | .+.. .-+.+..|+.. ..+++||||+++++++|+.|+.+|++|.++...+
T Consensus 65 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~--g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~ 142 (262)
T TIGR02640 65 GSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVRE--GFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGT 142 (262)
T ss_pred hhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHc--CCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCC
Confidence 001111000 0 0000 01345555553 4699999999999999999999999998765432
Q ss_pred -eEeec-CceEEEEecCC
Q 002758 625 -REVSV-SNAIFVTASSF 640 (884)
Q Consensus 625 -r~V~~-~naI~IlTSN~ 640 (884)
+.+.. .+..||+|+|.
T Consensus 143 ~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 143 SRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred CceEecCCCCEEEEeeCC
Confidence 22322 35669999995
No 98
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.03 E-value=1.1e-08 Score=118.04 Aligned_cols=225 Identities=12% Similarity=0.147 Sum_probs=141.5
Q ss_pred CccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCC
Q 002758 480 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 559 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s 559 (884)
++|....+..+...+..... .+..++++|.+|+||+.+|++|+........+|+.+||+....
T Consensus 141 lig~s~~~~~~~~~i~~~~~-----------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~------ 203 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAP-----------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE------ 203 (441)
T ss_pred eEecCHHHHHHHHHHhhccC-----------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH------
Confidence 56666666555544433211 1236889999999999999999998877788999999995421
Q ss_pred Ccccccccccccc-ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEec
Q 002758 560 KFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTAS 638 (884)
Q Consensus 560 ~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTS 638 (884)
.++...++|+..+ |.|.. ..-.+.+.....+++|||||+.+++.+|..|++++++|.+....+....-.++.+|+||
T Consensus 204 ~~~~~~lfg~~~~~~~~~~--~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t 281 (441)
T PRK10365 204 SLLESELFGHEKGAFTGAD--KRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAAT 281 (441)
T ss_pred HHHHHHhcCCCCCCcCCCC--cCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeC
Confidence 1111122333322 11100 00011122334689999999999999999999999999876533322222356688877
Q ss_pred CCCccccccccccccCCchhHHHHHhhhhhhhhhccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCch
Q 002758 639 SFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDT 718 (884)
Q Consensus 639 N~g~~~~~~~~~~~~~~fseeki~~ak~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~KRk~~~~~~~~~~~~~ 718 (884)
+.... +
T Consensus 282 ~~~~~--------------~------------------------------------------------------------ 287 (441)
T PRK10365 282 HRDLA--------------A------------------------------------------------------------ 287 (441)
T ss_pred CCCHH--------------H------------------------------------------------------------
Confidence 63100 0
Q ss_pred hHHHHhhcCCCCcccCCCCCcchhhhhhcCCCCCCCCCcccccccChhHHhccccee-eecCCCCH--HHHHHHHHHHHH
Q 002758 719 SEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAFNF--DALAEKILKDIN 795 (884)
Q Consensus 719 ~~~~K~~~~~s~~~lDLNl~~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~I-VvFkPLd~--e~L~eIi~~~L~ 795 (884)
......|.++|+.++..+ |...||-. ++|..++...+.
T Consensus 288 ---------------------------------------~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~ 328 (441)
T PRK10365 288 ---------------------------------------EVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQ 328 (441)
T ss_pred ---------------------------------------HHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHH
Confidence 000125777888887654 44556643 567777777666
Q ss_pred HHHhhhcCCCceEEeCHHHHHHHHHhccCCCCh-HHHHHHHHHHHH
Q 002758 796 ASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 796 ~~~~~l~g~gi~L~IddeAle~La~~~~~~~ga-R~le~wIE~vl~ 840 (884)
+...+. + .....+++++++.|..+.|. |+ |.|++.|+..+.
T Consensus 329 ~~~~~~-~-~~~~~~~~~a~~~L~~~~wp--gN~reL~~~~~~~~~ 370 (441)
T PRK10365 329 RFAERN-R-KAVKGFTPQAMDLLIHYDWP--GNIRELENAVERAVV 370 (441)
T ss_pred HHHHHh-C-CCCCCcCHHHHHHHHhCCCC--CHHHHHHHHHHHHHH
Confidence 654432 1 12345999999999999996 54 788888887554
No 99
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.01 E-value=1e-09 Score=122.51 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=97.5
Q ss_pred hHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 468 NWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 468 ~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
.+..+...+.+.++|+++++..+..++...+ ++||.||+|+|||++|+++|+.+ +.+|+++.
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~~---------------~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~ 75 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLAGG---------------HVLLEGPPGVGKTLLARALARAL---GLPFVRIQ 75 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHcCC---------------CEEEECCCCccHHHHHHHHHHHh---CCCeEEEe
Confidence 4566777888889999988877666655321 69999999999999999999998 47899999
Q ss_pred cCCCCCCCCCCCCcc-ccccccc-----cccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeC
Q 002758 548 LCPQDGEMNNPPKFY-HQVVGGD-----SVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 548 ~s~~~~e~~~~s~L~-p~gy~G~-----~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~d 621 (884)
|...-. .+.++ ...|... ...|+ -+-+..+++ .|+|+|||+++++.+|+.|+++|++++++.
T Consensus 76 ~t~~l~----p~d~~G~~~~~~~~~~~~~~~~~----~gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv 143 (329)
T COG0714 76 CTPDLL----PSDLLGTYAYAALLLEPGEFRFV----PGPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTV 143 (329)
T ss_pred cCCCCC----HHHhcCchhHhhhhccCCeEEEe----cCCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEE
Confidence 884211 12222 0001000 00010 112222222 599999999999999999999999999887
Q ss_pred CCCeE-eecCc-eEEEEecCCC
Q 002758 622 SYGRE-VSVSN-AIFVTASSFV 641 (884)
Q Consensus 622 s~Gr~-V~~~n-aI~IlTSN~g 641 (884)
. |.. +.+.. .++|+|+|-+
T Consensus 144 ~-~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 144 P-GLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred C-CcCCcCCCCCCEEEEccCcc
Confidence 3 334 66655 5577777854
No 100
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=1.3e-08 Score=122.15 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=82.2
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc------ceEEeccC-C
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE------NFICADLC-P 550 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~------~fi~id~s-~ 550 (884)
..|+||++++..|..++...+. .-.+||+||+|+|||++|+++|+.++.... +.-.++.. .
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl------------~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRI------------APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCC------------CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 4689999999998888775332 116999999999999999999999976321 11111100 0
Q ss_pred CCCCCCCCCCccccccccccc-cccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCe
Q 002758 551 QDGEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGR 625 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~-g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr 625 (884)
... .. ++.+...+. .-++...+..+.+.+.. ..+.||+|||+|+++...++.|++.||+-.
T Consensus 84 i~~-g~------h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp------- 149 (620)
T PRK14948 84 IAA-GN------ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP------- 149 (620)
T ss_pred Hhc-CC------CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC-------
Confidence 000 00 011110010 00111122344444433 346899999999999999999999999621
Q ss_pred EeecCceEEEEecC
Q 002758 626 EVSVSNAIFVTASS 639 (884)
Q Consensus 626 ~V~~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 150 ----~~tvfIL~t~ 159 (620)
T PRK14948 150 ----PRVVFVLATT 159 (620)
T ss_pred ----cCeEEEEEeC
Confidence 2577888775
No 101
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.7e-09 Score=122.57 Aligned_cols=126 Identities=19% Similarity=0.206 Sum_probs=85.8
Q ss_pred cCccchHHHHHHHHHHHH--------HhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 479 KIDWQDEAISVISQTIAQ--------RRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~--------~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
.|-|+++....|..+|.. .+.|+..++ + +||+||+|||||.+|++||... .-+|+.+...+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppk---G-----VLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpE 503 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPK---G-----VLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPE 503 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCc---e-----EEEECCCCcchHHHHHHHhhhh---cCCeeeccCHH
Confidence 456677777777766644 245555443 3 9999999999999999999876 67888887653
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHHhCCee
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKL 619 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~-----------~~vq~~Llq~le~G~l 619 (884)
.- ..|+|..+. .+..+....++...+||||||||-.- ..|.+.||.-|+...
T Consensus 504 L~-----------sk~vGeSEr-----~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e- 566 (693)
T KOG0730|consen 504 LF-----------SKYVGESER-----AIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE- 566 (693)
T ss_pred HH-----------HHhcCchHH-----HHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc-
Confidence 11 146666554 34556666666666999999999532 345666666665321
Q ss_pred eCCCCeEeecCceEEEEecCC
Q 002758 620 PDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 620 ~ds~Gr~V~~~naI~IlTSN~ 640 (884)
..++++||.+||.
T Consensus 567 --------~~k~V~ViAATNR 579 (693)
T KOG0730|consen 567 --------ALKNVLVIAATNR 579 (693)
T ss_pred --------ccCcEEEEeccCC
Confidence 1257888888884
No 102
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.00 E-value=1.3e-08 Score=107.46 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=57.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
+++|+||+|+|||+||+++++.++.....++.+++..... .+ . . .....+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~---------------------------~~-~-~-~~~~~~ 93 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL---------------------------AF-D-F-DPEAEL 93 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH---------------------------HH-h-h-cccCCE
Confidence 7999999999999999999999877777888888662110 00 0 0 112468
Q ss_pred EEEccccccCHHHHHHHHHHHhC
Q 002758 594 VYLENVDKADVHVQNSLSKAIQT 616 (884)
Q Consensus 594 IlLDEIEKa~~~vq~~Llq~le~ 616 (884)
|+|||||.++...|..|+.+++.
T Consensus 94 liiDdi~~l~~~~~~~L~~~~~~ 116 (227)
T PRK08903 94 YAVDDVERLDDAQQIALFNLFNR 116 (227)
T ss_pred EEEeChhhcCchHHHHHHHHHHH
Confidence 99999999999999999999975
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=1.8e-08 Score=114.05 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=78.2
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc-------ceEEeccCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE-------NFICADLCP 550 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~-------~fi~id~s~ 550 (884)
+.|+||+.+++.+...+...+. +-.+||+||+|+|||++|+++|+.++.... ++..+++..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~------------~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHL------------AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 4689999999888888764221 127999999999999999999999875211 111111110
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeE
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGRE 626 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~ 626 (884)
...++...+..+.+.+... ++.||+|||+|++....++.|++.+++..
T Consensus 85 --------------------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~-------- 136 (367)
T PRK14970 85 --------------------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPP-------- 136 (367)
T ss_pred --------------------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCC--------
Confidence 0001111123334433332 35799999999999999999999998621
Q ss_pred eecCceEEEEecC
Q 002758 627 VSVSNAIFVTASS 639 (884)
Q Consensus 627 V~~~naI~IlTSN 639 (884)
.+++||++++
T Consensus 137 ---~~~~~Il~~~ 146 (367)
T PRK14970 137 ---AHAIFILATT 146 (367)
T ss_pred ---CceEEEEEeC
Confidence 2467888775
No 104
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.99 E-value=2.1e-08 Score=110.72 Aligned_cols=113 Identities=11% Similarity=0.095 Sum_probs=76.4
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 558 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~ 558 (884)
.|+||++++..+...+...+ .+..++|+||+|+|||++|+++++.+ ...++.++++. .
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~------------~~~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~--~----- 79 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGR------------IPNMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD--C----- 79 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCC------------CCeEEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc--c-----
Confidence 57999999888877765211 12267779999999999999999987 34566666552 0
Q ss_pred CCccccccccccccccccchHHHHHHHHHh----CCCeEEEEcccccc-CHHHHHHHHHHHhCCeeeCCCCeEeecCceE
Q 002758 559 PKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKA-DVHVQNSLSKAIQTGKLPDSYGREVSVSNAI 633 (884)
Q Consensus 559 s~L~p~gy~G~~~g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa-~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI 633 (884)
. .. ...+.+.+.... ..+.||+|||+|++ ....++.|..++++.. .++.
T Consensus 80 ----------~-~~----~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~-----------~~~~ 133 (316)
T PHA02544 80 ----------R-ID----FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS-----------KNCS 133 (316)
T ss_pred ----------c-HH----HHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC-----------CCce
Confidence 0 00 000112222211 34689999999999 7788899988888631 3567
Q ss_pred EEEecC
Q 002758 634 FVTASS 639 (884)
Q Consensus 634 ~IlTSN 639 (884)
||+|||
T Consensus 134 ~Ilt~n 139 (316)
T PHA02544 134 FIITAN 139 (316)
T ss_pred EEEEcC
Confidence 889887
No 105
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=1.4e-08 Score=121.60 Aligned_cols=132 Identities=18% Similarity=0.161 Sum_probs=81.5
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc-----ceEEec-cCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE-----NFICAD-LCPQ 551 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~-----~fi~id-~s~~ 551 (884)
+.|+||+.++..|..++...+. .-.+||+||+|+|||++|++||+.++.... ++-.++ |...
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i------------~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRV------------AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC------------ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 4689999999998887765332 115899999999999999999999864221 100000 0000
Q ss_pred CCCCCCCCCccccccccccc-cccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeE
Q 002758 552 DGEMNNPPKFYHQVVGGDSV-QFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGRE 626 (884)
Q Consensus 552 ~~e~~~~s~L~p~gy~G~~~-g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~ 626 (884)
.. ..+ +.+...+. ..++...+..+.+.+... .+.||||||+|+++...++.|++.||+..
T Consensus 84 ~~-~~~------~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-------- 148 (585)
T PRK14950 84 AE-GSA------VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-------- 148 (585)
T ss_pred hc-CCC------CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC--------
Confidence 00 000 11110000 112222223444544443 36799999999999999999999999742
Q ss_pred eecCceEEEEecC
Q 002758 627 VSVSNAIFVTASS 639 (884)
Q Consensus 627 V~~~naI~IlTSN 639 (884)
.+++||++++
T Consensus 149 ---~~tv~Il~t~ 158 (585)
T PRK14950 149 ---PHAIFILATT 158 (585)
T ss_pred ---CCeEEEEEeC
Confidence 2567888764
No 106
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.98 E-value=6.8e-09 Score=108.76 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=56.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
+++|+||+|||||++|+++++.......+++.++++.... . ...+.+.+.. ..+
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~------------------~------~~~~~~~~~~--~~l 93 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ------------------A------DPEVLEGLEQ--ADL 93 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH------------------h------HHHHHhhccc--CCE
Confidence 7999999999999999999998876666788888773311 0 0112222222 369
Q ss_pred EEEccccccCHH--HHHHHHHHHhC
Q 002758 594 VYLENVDKADVH--VQNSLSKAIQT 616 (884)
Q Consensus 594 IlLDEIEKa~~~--vq~~Llq~le~ 616 (884)
|+||||+.++.. .+..|+.+++.
T Consensus 94 LvIDdi~~l~~~~~~~~~L~~~l~~ 118 (226)
T TIGR03420 94 VCLDDVEAIAGQPEWQEALFHLYNR 118 (226)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHH
Confidence 999999999874 48888888874
No 107
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.98 E-value=1.4e-08 Score=122.79 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=82.3
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHc----------C---------
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY----------G--------- 538 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~----------g--------- 538 (884)
..|+||+.++.++..+....+. + .+||.|++|+|||++|++|+..+- .
T Consensus 4 ~~ivGq~~~~~al~~~av~~~~---------g----~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDPRI---------G----GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred chhcChHHHHHHHHHHhhCCCC---------C----eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 4689999988776544432211 2 599999999999999999999872 0
Q ss_pred -------------CCcceEEeccCCCCCCCCCCCCcccccccccccc---c-cccchHHHHHHHHHhCCCeEEEEccccc
Q 002758 539 -------------GKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQ---F-RGKTLADYVAWELLKKPLSVVYLENVDK 601 (884)
Q Consensus 539 -------------s~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g---~-rgk~~l~~L~eal~~~p~~VIlLDEIEK 601 (884)
...+|+.+.++..+ ...+|...- . .|.. ..-.+.+.....+|+|||||++
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t~-----------~~l~G~~d~~~~l~~g~~--~~~~G~L~~A~~GiL~lDEi~~ 137 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGATE-----------DRVVGSLDIERALREGEK--AFQPGLLAEAHRGILYIDEVNL 137 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCcH-----------HHcCCcccHHHHhhcCCe--eecCcceeecCCCeEEeChhhh
Confidence 12234333322110 011121100 0 0000 0001122233457999999999
Q ss_pred cCHHHHHHHHHHHhCCeeeC-CCCeEeec-CceEEEEecCC
Q 002758 602 ADVHVQNSLSKAIQTGKLPD-SYGREVSV-SNAIFVTASSF 640 (884)
Q Consensus 602 a~~~vq~~Llq~le~G~l~d-s~Gr~V~~-~naI~IlTSN~ 640 (884)
+++.+|+.|+++|++|.+.. ..|....+ .+.++|.|+|.
T Consensus 138 l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np 178 (633)
T TIGR02442 138 LDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNP 178 (633)
T ss_pred CCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCC
Confidence 99999999999999996432 12322222 45778888885
No 108
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.98 E-value=4e-09 Score=120.49 Aligned_cols=129 Identities=20% Similarity=0.181 Sum_probs=85.1
Q ss_pred cCccchHHHHHHHHHHHHHh--------cCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 479 KIDWQDEAISVISQTIAQRR--------TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~r--------sg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
.|.|.++.++.|...+.... .|+.. +..+||+||+|||||++|+++|..+ ..+|+.++++.
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~--------p~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~ 200 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEP--------PKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSE 200 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCC--------CCceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHH
Confidence 57888888888888875431 22221 2259999999999999999999987 45688887763
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHHhCCee
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGKL 619 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa-----------~~~vq~~Llq~le~G~l 619 (884)
... .|.|.... .+..+.+..+....+||||||||.+ +..++..|.+++..-.-
T Consensus 201 l~~-----------~~~g~~~~-----~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 201 LVQ-----------KFIGEGAR-----LVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred HhH-----------hhccchHH-----HHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 211 22332221 2234444445555689999999986 56788888888754211
Q ss_pred eCCCCeEeecCceEEEEecCC
Q 002758 620 PDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 620 ~ds~Gr~V~~~naI~IlTSN~ 640 (884)
.. ...+++||+|||.
T Consensus 265 ~~------~~~~v~VI~aTn~ 279 (389)
T PRK03992 265 FD------PRGNVKIIAATNR 279 (389)
T ss_pred cC------CCCCEEEEEecCC
Confidence 11 1136778998884
No 109
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.97 E-value=1.1e-09 Score=106.36 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=74.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcc-ccccccccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~-p~gy~G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
.++|.||+|+|||++|+.||+.+ ..+++.+.++.... ...|+ ..........|. -+.+..+++ ...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~----~~dl~g~~~~~~~~~~~~----~~~l~~a~~--~~~ 67 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTT----EEDLIGSYDPSNGQFEFK----DGPLVRAMR--KGG 67 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTST----HHHHHCEEET-TTTTCEE----E-CCCTTHH--EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccc----cccceeeeeecccccccc----ccccccccc--cee
Confidence 38999999999999999999999 66788888874321 12222 000000001111 123333443 358
Q ss_pred EEEEccccccCHHHHHHHHHHHhCCeeeCCC-CeEeecCc-------eEEEEecCCCc
Q 002758 593 VVYLENVDKADVHVQNSLSKAIQTGKLPDSY-GREVSVSN-------AIFVTASSFVE 642 (884)
Q Consensus 593 VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~-Gr~V~~~n-------aI~IlTSN~g~ 642 (884)
|+|||||+++++.++..|+.+++++++.... ++.+...+ .+||+|+|...
T Consensus 68 il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred EEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 9999999999999999999999999887433 34444443 78999999643
No 110
>PRK04195 replication factor C large subunit; Provisional
Probab=98.96 E-value=2e-08 Score=117.80 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=72.6
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 558 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~ 558 (884)
.|+||++++..|...+.....|. + .-.+||+||+|+|||++|++||+.+ +..++.++.+....
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~-----~----~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~----- 77 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGK-----P----KKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRT----- 77 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCC-----C----CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEccccccc-----
Confidence 47999999999999988765421 1 1279999999999999999999987 34567776552210
Q ss_pred CCccccccccccccccccchHHHHH-HHHH-----hCCCeEEEEccccccCH----HHHHHHHHHHhC
Q 002758 559 PKFYHQVVGGDSVQFRGKTLADYVA-WELL-----KKPLSVVYLENVDKADV----HVQNSLSKAIQT 616 (884)
Q Consensus 559 s~L~p~gy~G~~~g~rgk~~l~~L~-eal~-----~~p~~VIlLDEIEKa~~----~vq~~Llq~le~ 616 (884)
...+..+. .+.. ..+..||+|||+|.+.. ..++.|+++++.
T Consensus 78 -----------------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~ 128 (482)
T PRK04195 78 -----------------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK 128 (482)
T ss_pred -----------------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc
Confidence 00111111 1111 12568999999998865 678889999884
No 111
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.96 E-value=3.1e-08 Score=108.99 Aligned_cols=116 Identities=22% Similarity=0.389 Sum_probs=76.6
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc--ceEEeccCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE--NFICADLCPQDGEMN 556 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~--~fi~id~s~~~~e~~ 556 (884)
.++||++++..+...+.... .+ .++|+||+|+|||++|+++++.+++... .++.++.+...
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~---------~~----~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~---- 80 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKN---------MP----HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER---- 80 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCC---------CC----eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc----
Confidence 36799999988887764311 11 5899999999999999999999976543 33333322110
Q ss_pred CCCCccccccccccccccccchHHHHHHHHHh-----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCc
Q 002758 557 NPPKFYHQVVGGDSVQFRGKTLADYVAWELLK-----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSN 631 (884)
Q Consensus 557 ~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~-----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~n 631 (884)
+. . ...+.+.+.... .+..||+|||+|.+....++.|+++++... .+
T Consensus 81 -----------~~--~----~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-----------~~ 132 (319)
T PRK00440 81 -----------GI--D----VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-----------QN 132 (319)
T ss_pred -----------ch--H----HHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-----------CC
Confidence 00 0 011222222222 235699999999999999999999998632 23
Q ss_pred eEEEEecC
Q 002758 632 AIFVTASS 639 (884)
Q Consensus 632 aI~IlTSN 639 (884)
++||+++|
T Consensus 133 ~~lIl~~~ 140 (319)
T PRK00440 133 TRFILSCN 140 (319)
T ss_pred CeEEEEeC
Confidence 56788776
No 112
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.95 E-value=2.4e-08 Score=117.14 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=83.2
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCC-----
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG----- 553 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~----- 553 (884)
.|+||..+++.+..++ .+ .-.++|.||+|+|||++|++|+..+...... +.++......
T Consensus 193 dv~Gq~~~~~al~~aa----~~-----------g~~vlliG~pGsGKTtlar~l~~llp~~~~~-~~le~~~i~s~~g~~ 256 (499)
T TIGR00368 193 DIKGQQHAKRALEIAA----AG-----------GHNLLLFGPPGSGKTMLASRLQGILPPLTNE-EAIETARIWSLVGKL 256 (499)
T ss_pred HhcCcHHHHhhhhhhc----cC-----------CCEEEEEecCCCCHHHHHHHHhcccCCCCCc-EEEeccccccchhhh
Confidence 4799998876655443 21 1279999999999999999999877532211 1222221000
Q ss_pred ---------CCCCCCC-ccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCC-
Q 002758 554 ---------EMNNPPK-FYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS- 622 (884)
Q Consensus 554 ---------e~~~~s~-L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds- 622 (884)
.+-.++. ......+|... ..-.+++....++|+|||||+++++.+|+.|++.||+|.++..
T Consensus 257 ~~~~~~~~~Pf~~p~~s~s~~~~~ggg~--------~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r 328 (499)
T TIGR00368 257 IDRKQIKQRPFRSPHHSASKPALVGGGP--------IPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISR 328 (499)
T ss_pred ccccccccCCccccccccchhhhhCCcc--------ccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEe
Confidence 0000000 00011111000 0112234455678999999999999999999999999987532
Q ss_pred CCeEeec-CceEEEEecCCC
Q 002758 623 YGREVSV-SNAIFVTASSFV 641 (884)
Q Consensus 623 ~Gr~V~~-~naI~IlTSN~g 641 (884)
.|..+.+ .+..+|+++|..
T Consensus 329 ~g~~~~~pa~frlIaa~Npc 348 (499)
T TIGR00368 329 ASAKIFYPARFQLVAAMNPC 348 (499)
T ss_pred cCcceeccCCeEEEEecCCc
Confidence 2323333 467899999964
No 113
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.94 E-value=2.4e-08 Score=106.54 Aligned_cols=63 Identities=13% Similarity=0.050 Sum_probs=48.0
Q ss_pred hHHhcccc--eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 002758 766 QDFFNQRV--KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVL 839 (884)
Q Consensus 766 ~efl~rID--~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl 839 (884)
+++..|+. .++.+.|++.+++.+++.+...+. .+.+++++++||+...-- ..|.++..++.+-
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~---------~~~l~~~v~~~L~~~~~~--d~r~l~~~l~~l~ 214 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR---------GFELPEDVGRFLLKRLDR--EMRTLFMTLDQLD 214 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHhhcC--CHHHHHHHHHHHH
Confidence 45555553 589999999999999987644331 278999999999997543 5688999988864
No 114
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.93 E-value=1.5e-08 Score=124.72 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=84.7
Q ss_pred ccCccchHHHHHHHHHHHHHh--------cCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 478 EKIDWQDEAISVISQTIAQRR--------TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~r--------sg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
+.|.|++.+...|...+.... .|+.. +.-+||+||+|||||.+|++||..+ ..+|+.++++
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~--------~~giLL~GppGtGKT~lakalA~e~---~~~fi~v~~~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRP--------PKGVLLFGPPGTGKTLLAKAVATES---GANFIAVRGP 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCC--------CceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehH
Confidence 457899999888888776421 12211 2249999999999999999999986 4678888876
Q ss_pred CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCH------------HHHHHHHHHHhCC
Q 002758 550 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV------------HVQNSLSKAIQTG 617 (884)
Q Consensus 550 ~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~------------~vq~~Llq~le~G 617 (884)
..-. .|+|..+. .+..+....+....+||||||||.+.+ .+.+.|+..|+.
T Consensus 522 ~l~~-----------~~vGese~-----~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg- 584 (733)
T TIGR01243 522 EILS-----------KWVGESEK-----AIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG- 584 (733)
T ss_pred HHhh-----------cccCcHHH-----HHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhc-
Confidence 3211 34454433 234555555666779999999997632 344556666653
Q ss_pred eeeCCCCeEeecCceEEEEecCC
Q 002758 618 KLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 618 ~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
+. ...+.+||+|||.
T Consensus 585 -~~-------~~~~v~vI~aTn~ 599 (733)
T TIGR01243 585 -IQ-------ELSNVVVIAATNR 599 (733)
T ss_pred -cc-------CCCCEEEEEeCCC
Confidence 11 1246889998884
No 115
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.93 E-value=5.7e-10 Score=107.46 Aligned_cols=105 Identities=15% Similarity=0.243 Sum_probs=63.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcccccccccc---c---cccccchHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDS---V---QFRGKTLADYVAWELL 587 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~---~---g~rgk~~l~~L~eal~ 587 (884)
++|+.|++|+|||++|++||+.+ +..|.+|.+... +.|....|.. . .|+ + ..+-+-
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tpd---------llPsDi~G~~v~~~~~~~f~---~---~~GPif 62 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTPD---------LLPSDILGFPVYDQETGEFE---F---RPGPIF 62 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--TT-----------HHHHHEEEEEETTTTEEE---E---EE-TT-
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecCC---------CCcccceeeeeeccCCCeeE---e---ecChhh
Confidence 48999999999999999999998 345777876521 1122222221 1 010 0 000111
Q ss_pred hCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCc-eEEEEecCC
Q 002758 588 KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSN-AIFVTASSF 640 (884)
Q Consensus 588 ~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~n-aI~IlTSN~ 640 (884)
..|+|+|||.+++|.+|.+|+++|++++++. .|.+..+.+ .+||+|-|.
T Consensus 63 ---~~ill~DEiNrappktQsAlLeam~Er~Vt~-~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 63 ---TNILLADEINRAPPKTQSALLEAMEERQVTI-DGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp ---SSEEEEETGGGS-HHHHHHHHHHHHHSEEEE-TTEEEE--SS-EEEEEE-T
T ss_pred ---hceeeecccccCCHHHHHHHHHHHHcCeEEe-CCEEEECCCcEEEEEecCc
Confidence 2599999999999999999999999999987 578888887 556667775
No 116
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.91 E-value=2.7e-08 Score=113.84 Aligned_cols=129 Identities=20% Similarity=0.150 Sum_probs=80.1
Q ss_pred cCccchHHHHHHHHHHHHHh--------cCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 479 KIDWQDEAISVISQTIAQRR--------TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~r--------sg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
.|.|.+..+..|..++.... .|+.. +..+||+||+|||||++|+++|..+ ...|+.+..+.
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~--------pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~ 214 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDP--------PRGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSE 214 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCC--------CceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHH
Confidence 47888888888888876431 22221 2259999999999999999999986 45677776542
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHHhCCee
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGKL 619 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa-----------~~~vq~~Llq~le~G~l 619 (884)
.. ..|.|.... .+..+....+.+..+||||||||.+ +..++..+.+++..-.-
T Consensus 215 l~-----------~k~~ge~~~-----~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 215 FV-----------QKYLGEGPR-----MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred HH-----------HHhcchhHH-----HHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 11 123332221 2234444445555689999999965 34566666666653110
Q ss_pred eCCCCeEeecCceEEEEecCC
Q 002758 620 PDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 620 ~ds~Gr~V~~~naI~IlTSN~ 640 (884)
.+. ..+++||+|||.
T Consensus 279 ~~~------~~~v~VI~aTN~ 293 (398)
T PTZ00454 279 FDQ------TTNVKVIMATNR 293 (398)
T ss_pred cCC------CCCEEEEEecCC
Confidence 010 135678888873
No 117
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.91 E-value=1.1e-08 Score=119.00 Aligned_cols=133 Identities=19% Similarity=0.236 Sum_probs=88.6
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCC----cceEEeccC-CCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK----ENFICADLC-PQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~----~~fi~id~s-~~~ 552 (884)
..|+||+.++..|..++...|... .+||.||-|||||++||.||+.|.-.. .++..+... ..+
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~h------------AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAH------------AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchh------------hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence 457999999999999998866521 599999999999999999999996432 233222111 111
Q ss_pred CCCCCCCCccccccccccccccccchHHHHHHHHHhCC----CeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 553 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKP----LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p----~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
. .....++ ++-+. .-+|-.-++.|.+.+.-.| +.|++||||+.+....+|+||+.+|+--
T Consensus 84 ~--g~~~Dvi--EiDaA--Sn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP---------- 147 (515)
T COG2812 84 E--GSLIDVI--EIDAA--SNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPP---------- 147 (515)
T ss_pred c--CCcccch--hhhhh--hccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCc----------
Confidence 1 0001111 00000 0112223456666665544 6899999999999999999999999742
Q ss_pred cCceEEEEecC
Q 002758 629 VSNAIFVTASS 639 (884)
Q Consensus 629 ~~naI~IlTSN 639 (884)
.+++|||+|.
T Consensus 148 -~hV~FIlATT 157 (515)
T COG2812 148 -SHVKFILATT 157 (515)
T ss_pred -cCeEEEEecC
Confidence 4678888876
No 118
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.91 E-value=2.3e-08 Score=111.81 Aligned_cols=147 Identities=20% Similarity=0.177 Sum_probs=80.1
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcC------CCcceEEeccCC--
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG------GKENFICADLCP-- 550 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~g------s~~~fi~id~s~-- 550 (884)
.|+||++++..+.-++... |. + .+||.|++|+|||++|++||..+-. ..-.+.++.+..
T Consensus 9 ~i~Gq~~~~~~l~~~~~~~--~~-------~----~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~ 75 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAIDP--GI-------G----GVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEW 75 (334)
T ss_pred HhCCHHHHHHHHHHHHhcc--CC-------C----cEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccc
Confidence 5799999998776544322 11 2 6999999999999999999999821 110111111110
Q ss_pred --CCC-CCC-CCCCcc--ccc-----cccccc---cc-cccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHh
Q 002758 551 --QDG-EMN-NPPKFY--HQV-----VGGDSV---QF-RGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQ 615 (884)
Q Consensus 551 --~~~-e~~-~~s~L~--p~g-----y~G~~~---g~-rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le 615 (884)
... +.. ....+. |.+ .+|... .. .|+. ..-.+.+.+...+++|+|||+.+++.+|..|+++|+
T Consensus 76 ~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~--~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~me 153 (334)
T PRK13407 76 AHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEK--AFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQ 153 (334)
T ss_pred ccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCe--eecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHH
Confidence 000 000 000000 111 222100 00 0000 000111222334799999999999999999999999
Q ss_pred CCeeeC-CCCeEeecC-ceEEEEecCC
Q 002758 616 TGKLPD-SYGREVSVS-NAIFVTASSF 640 (884)
Q Consensus 616 ~G~l~d-s~Gr~V~~~-naI~IlTSN~ 640 (884)
+|.++. ..|....+. ..++|.|.|.
T Consensus 154 e~~v~v~r~G~~~~~p~rfiviAt~NP 180 (334)
T PRK13407 154 SGENVVEREGLSIRHPARFVLVGSGNP 180 (334)
T ss_pred cCCeEEEECCeEEecCCCEEEEecCCc
Confidence 997432 234333332 4667777775
No 119
>PRK08727 hypothetical protein; Validated
Probab=98.91 E-value=3.8e-08 Score=104.77 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=45.4
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Q 002758 774 KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGF 843 (884)
Q Consensus 774 ~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~~~L 843 (884)
.++.|+|++.+++.+++.+...+. .+.++++++++|+...- ...|.+...++.+..-++
T Consensus 155 ~~~~l~~~~~e~~~~iL~~~a~~~---------~l~l~~e~~~~La~~~~--rd~r~~l~~L~~l~~~~~ 213 (233)
T PRK08727 155 IRIGLPVLDDVARAAVLRERAQRR---------GLALDEAAIDWLLTHGE--RELAGLVALLDRLDRESL 213 (233)
T ss_pred ceEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHH
Confidence 578999999999999999755441 37899999999999833 245777777887665344
No 120
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.91 E-value=5.7e-08 Score=114.71 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=95.0
Q ss_pred hHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 468 NWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 468 ~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
-+..|.+.+...|+||+.+...|.-++...... ....+..-+.++++||.|++|+|||.+|+++++..-. ..|+...
T Consensus 193 ~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r--~~~~~~~ 269 (509)
T smart00350 193 IYERLSRSLAPSIYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR--AVYTTGK 269 (509)
T ss_pred HHHHHHHhhCccccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc--ceEcCCC
Confidence 345677788889999998876666555432110 0011112245779999999999999999999997632 2233211
Q ss_pred cCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCC-CCeE
Q 002758 548 LCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS-YGRE 626 (884)
Q Consensus 548 ~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds-~Gr~ 626 (884)
.... ..+.. ... .+. +.|.. ..-.+++.....++++|||++++++..|..|+++|+.+.++.. .|..
T Consensus 270 ~~~~-------~~l~~-~~~-~~~-~~g~~--~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~ 337 (509)
T smart00350 270 GSSA-------VGLTA-AVT-RDP-ETREF--TLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGIT 337 (509)
T ss_pred CCCc-------CCccc-cce-Ecc-CcceE--EecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEE
Confidence 1100 00100 000 000 00000 0001233334568999999999999999999999999987643 3544
Q ss_pred eec-CceEEEEecCC
Q 002758 627 VSV-SNAIFVTASSF 640 (884)
Q Consensus 627 V~~-~naI~IlTSN~ 640 (884)
..+ .++.||+|+|.
T Consensus 338 ~~l~~~~~viAa~NP 352 (509)
T smart00350 338 TTLNARCSVLAAANP 352 (509)
T ss_pred EEecCCcEEEEEeCC
Confidence 444 35779999986
No 121
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.89 E-value=1.4e-08 Score=124.62 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=79.1
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCC-------CcceEEeccCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 550 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs-------~~~fi~id~s~ 550 (884)
+.|+||++.+..+...+.+.. . . .++|+||+|||||.+|++||+.+... ...++.+|++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--------~-~----n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~ 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--------K-N----NPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--------C-C----ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence 469999988887765553221 1 1 58999999999999999999987432 34566677652
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccC---------HHHHHHHHHHHhCCeeeC
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD---------VHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~---------~~vq~~Llq~le~G~l~d 621 (884)
... ...|.|..+. .+..+.+.+......|+|||||+.+- .++++.|+..|++|.+.
T Consensus 249 l~a---------~~~~~g~~e~-----~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~- 313 (731)
T TIGR02639 249 LLA---------GTKYRGDFEE-----RLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLR- 313 (731)
T ss_pred Hhh---------hccccchHHH-----HHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeE-
Confidence 110 0012221111 12333444444556899999999663 46789999999876543
Q ss_pred CCCeEeecCceEEEEecC
Q 002758 622 SYGREVSVSNAIFVTASS 639 (884)
Q Consensus 622 s~Gr~V~~~naI~IlTSN 639 (884)
+|.+||
T Consensus 314 ------------~IgaTt 319 (731)
T TIGR02639 314 ------------CIGSTT 319 (731)
T ss_pred ------------EEEecC
Confidence 777776
No 122
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.88 E-value=6.6e-08 Score=107.19 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=80.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcccccccccc-----ccccccch-HHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDS-----VQFRGKTL-ADYVAWELL 587 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~-----~g~rgk~~-l~~L~eal~ 587 (884)
.++|.||+|+|||++|+.||+.+ +.+++++++..... ...+ +|.. .+.....+ -+.|..|.+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~----~~Dl-----iG~~~~~l~~g~~~~~f~~GpL~~A~~ 133 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVS----RIDL-----VGKDAIVLKDGKQITEFRDGILPWALQ 133 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCC----hhhc-----CCCceeeccCCcceeEEecCcchhHHh
Confidence 59999999999999999999999 57889999884321 1112 2221 11000001 245666665
Q ss_pred hCCCeEEEEccccccCHHHHHHHHHHHhC-CeeeC-CCCeEeecC-ceEEEEecCC
Q 002758 588 KKPLSVVYLENVDKADVHVQNSLSKAIQT-GKLPD-SYGREVSVS-NAIFVTASSF 640 (884)
Q Consensus 588 ~~p~~VIlLDEIEKa~~~vq~~Llq~le~-G~l~d-s~Gr~V~~~-naI~IlTSN~ 640 (884)
. ..++|||||+.++++++..|..+||. |.++. ..++.+.-. +-+||+|.|.
T Consensus 134 ~--g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 134 H--NVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred C--CeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 4 37899999999999999999999994 67765 345666454 6779999995
No 123
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.88 E-value=5.7e-09 Score=99.17 Aligned_cols=99 Identities=22% Similarity=0.199 Sum_probs=69.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCC-CeE
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKP-LSV 593 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p-~~V 593 (884)
+||+||+|+|||++|+++|+.+ +.+++.+++..... .+.+... ..+..+........ .+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~-----------~~~~~~~-----~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELIS-----------SYAGDSE-----QKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHT-----------SSTTHHH-----HHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---cccccccccccccc-----------ccccccc-----ccccccccccccccccee
Confidence 6899999999999999999998 57789999874321 0111111 12233334444443 699
Q ss_pred EEEccccccCHHH-----------HHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 594 VYLENVDKADVHV-----------QNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 594 IlLDEIEKa~~~v-----------q~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
|||||+|++-+.. ++.|+..|++..-. -++.+||+|||.
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~ 111 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNS 111 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESS
T ss_pred eeeccchhcccccccccccccccccceeeecccccccc--------cccceeEEeeCC
Confidence 9999999987765 88888888875322 246889999996
No 124
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=1.7e-08 Score=115.23 Aligned_cols=128 Identities=15% Similarity=0.117 Sum_probs=80.2
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCC------
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ------ 551 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~------ 551 (884)
+.|+||+.+++.+.+++...+.......++ -+-.+||+||+|+|||++|+++|+.++.....- -.|...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~---l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~--~~Cg~C~~C~~~ 79 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSG---MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDE--PGCGECRACRTV 79 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCC---CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCC--CCCCCCHHHHHH
Confidence 468999999999999998765322221111 223699999999999999999999987543210 011110
Q ss_pred CCCCCCCCC-cc-ccccccccccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCC
Q 002758 552 DGEMNNPPK-FY-HQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTG 617 (884)
Q Consensus 552 ~~e~~~~s~-L~-p~gy~G~~~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G 617 (884)
.. ..+++- ++ |.+ ...+...+..+.+.+... ++.|+||||+|++++..+|.|++.||+.
T Consensus 80 ~~-~~hpD~~~i~~~~------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 80 LA-GTHPDVRVVAPEG------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred hc-CCCCCEEEecccc------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 00 111111 11 111 011111233444544443 4579999999999999999999999974
No 125
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.86 E-value=3.8e-08 Score=110.37 Aligned_cols=143 Identities=16% Similarity=0.153 Sum_probs=80.7
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCC----cceEEeccCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK----ENFICADLCPQDG 553 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~----~~fi~id~s~~~~ 553 (884)
..|+||++++.+|..++...+. + -+||.|++|+|||++|++|++.+.... .+|. +.....
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~---------~----~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~---~~p~~p 80 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKI---------G----GVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN---SHPSDP 80 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCC---------C----eEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC---CCCCCh
Confidence 3589999998887766554322 2 488999999999999999999885321 2232 110000
Q ss_pred CCCCCCCcc---------------------cccccccccc-cccc-chHHHHH--------HHHHhCCCeEEEEcccccc
Q 002758 554 EMNNPPKFY---------------------HQVVGGDSVQ-FRGK-TLADYVA--------WELLKKPLSVVYLENVDKA 602 (884)
Q Consensus 554 e~~~~s~L~---------------------p~gy~G~~~g-~rgk-~~l~~L~--------eal~~~p~~VIlLDEIEKa 602 (884)
+.. ...++ |.+. .++ ..|. .....+. +.+.+...+|+|+|||+.+
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~---ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 81 ELM-SDEVREAIQNGETIETEKIKIPMVDLPLGA---TEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred hhh-chhhhhhhcccccccceeccccceecCCCC---chhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 000 00000 1110 000 0000 0000011 1122233579999999999
Q ss_pred CHHHHHHHHHHHhCCeeeC-CCCeEeecC-ceEEEEecCC
Q 002758 603 DVHVQNSLSKAIQTGKLPD-SYGREVSVS-NAIFVTASSF 640 (884)
Q Consensus 603 ~~~vq~~Llq~le~G~l~d-s~Gr~V~~~-naI~IlTSN~ 640 (884)
++.+|..|+++|++|..+. ..|....+. ..|+|.|.|.
T Consensus 157 ~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np 196 (350)
T CHL00081 157 DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNP 196 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCc
Confidence 9999999999999976442 124333332 4666666665
No 126
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.84 E-value=3e-08 Score=116.13 Aligned_cols=51 Identities=25% Similarity=0.275 Sum_probs=39.3
Q ss_pred cCccchHHHHHHHHHHHHH--------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHc
Q 002758 479 KIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~--------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
.|.|.+..++.|..+|... ..|+.. |. -+||+||+|||||.+|+++|+.+.
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~---p~-----GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKP---PK-----GVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCC---Cc-----ceEEECCCCCcHHHHHHHHHHhhc
Confidence 4778999999988888642 123222 22 499999999999999999999884
No 127
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.84 E-value=9.8e-08 Score=106.93 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=80.5
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHc----------C---CCcceE
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY----------G---GKENFI 544 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~----------g---s~~~fi 544 (884)
..|+||++++.++.-++..... + ++++.|++|+|||+++++|+..+- + ....++
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~---------g----~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKI---------G----GVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMM 70 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCC---------C----eEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcccc
Confidence 3689999999887655543221 2 699999999999999999999882 1 111122
Q ss_pred EeccCCCCCCCCCC-------CCc--ccc-----ccccccc-c--c-cccchHHHHHHHHHhCCCeEEEEccccccCHHH
Q 002758 545 CADLCPQDGEMNNP-------PKF--YHQ-----VVGGDSV-Q--F-RGKTLADYVAWELLKKPLSVVYLENVDKADVHV 606 (884)
Q Consensus 545 ~id~s~~~~e~~~~-------s~L--~p~-----gy~G~~~-g--~-rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~v 606 (884)
+.+|..... +... -.+ +|. .++|... . . .|+.. .-.+.+.+...+|+|||||+.+++.+
T Consensus 71 ~~~~r~~~~-~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~--~~~GlL~~A~~GvL~lDEi~~L~~~~ 147 (337)
T TIGR02030 71 CEEVRIRVD-SQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKA--FEPGLLARANRGILYIDEVNLLEDHL 147 (337)
T ss_pred ChHHhhhhh-cccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEE--eecCcceeccCCEEEecChHhCCHHH
Confidence 222221000 0000 000 122 1122100 0 0 00000 00011222335799999999999999
Q ss_pred HHHHHHHHhCCeeeC-CCCeEeecC-ceEEEEecCC
Q 002758 607 QNSLSKAIQTGKLPD-SYGREVSVS-NAIFVTASSF 640 (884)
Q Consensus 607 q~~Llq~le~G~l~d-s~Gr~V~~~-naI~IlTSN~ 640 (884)
|..|+++|++|.++. ..|....+. +.++|.|.|.
T Consensus 148 Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np 183 (337)
T TIGR02030 148 VDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNP 183 (337)
T ss_pred HHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccc
Confidence 999999999986332 234333332 4566666664
No 128
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.84 E-value=4.1e-08 Score=111.13 Aligned_cols=137 Identities=19% Similarity=0.143 Sum_probs=80.9
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 558 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~ 558 (884)
.|.|.++.++.|..++.........-.......+..+||+||+|||||++|+++|+.+ ...|+.+..+...
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~~l~------ 193 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELV------ 193 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCEEecchHHHH------
Confidence 5799999999988888653210000000000112259999999999999999999987 3456666543210
Q ss_pred CCccccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 559 PKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 559 s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa-----------~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
..|.|.... .+..+....+....+||||||||.+ ++.++..|.+++..-.-.+
T Consensus 194 -----~~~~g~~~~-----~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~------ 257 (364)
T TIGR01242 194 -----RKYIGEGAR-----LVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD------ 257 (364)
T ss_pred -----HHhhhHHHH-----HHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC------
Confidence 012222111 1233334444445689999999986 4667777777775411011
Q ss_pred ecCceEEEEecCC
Q 002758 628 SVSNAIFVTASSF 640 (884)
Q Consensus 628 ~~~naI~IlTSN~ 640 (884)
...+++||+|||.
T Consensus 258 ~~~~v~vI~ttn~ 270 (364)
T TIGR01242 258 PRGNVKVIAATNR 270 (364)
T ss_pred CCCCEEEEEecCC
Confidence 1136778998884
No 129
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.82 E-value=1.5e-08 Score=102.18 Aligned_cols=131 Identities=21% Similarity=0.236 Sum_probs=78.3
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcce-EEeccCC---CCCCCCC
Q 002758 482 WQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF-ICADLCP---QDGEMNN 557 (884)
Q Consensus 482 GQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~f-i~id~s~---~~~e~~~ 557 (884)
||+++++.+...+...+. +-.+||+||+|+||+++|+++|+.+++....- ..-.|.. .. ...+
T Consensus 1 gq~~~~~~L~~~~~~~~l------------~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~-~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL------------PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIE-EGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHH-TT-C
T ss_pred CcHHHHHHHHHHHHcCCc------------ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHH-hccC
Confidence 899999888888765433 12699999999999999999999998764321 0000100 00 0011
Q ss_pred CCCcccccccccccc--ccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCc
Q 002758 558 PPKFYHQVVGGDSVQ--FRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSN 631 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g--~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~n 631 (884)
.+-.+ +..... ..+...+..+.+.+.. .++.|++|||+|+|....||+|++.||+.. .+
T Consensus 68 ~d~~~----~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp-----------~~ 132 (162)
T PF13177_consen 68 PDFII----IKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPP-----------EN 132 (162)
T ss_dssp TTEEE----EETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT-----------TT
T ss_pred cceEE----EecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCC-----------CC
Confidence 11111 000000 1111222344444333 356799999999999999999999999852 37
Q ss_pred eEEEEecCC
Q 002758 632 AIFVTASSF 640 (884)
Q Consensus 632 aI~IlTSN~ 640 (884)
++|||+|+-
T Consensus 133 ~~fiL~t~~ 141 (162)
T PF13177_consen 133 TYFILITNN 141 (162)
T ss_dssp EEEEEEES-
T ss_pred EEEEEEECC
Confidence 889988874
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.82 E-value=4.8e-08 Score=121.44 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=77.3
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCC-------CcceEEeccCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 550 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs-------~~~fi~id~s~ 550 (884)
+.|+||++.+..+...+.+.+. . .++|+||+|||||.+|+.||+.+... ...++.+|++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~---------~----n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~ 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ---------N----NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc---------C----ceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh
Confidence 5689999887777665543211 1 58999999999999999999987432 23466677663
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHh-CCCeEEEEccccccCH--------HHHHHHHHHHhCCeeeC
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKADV--------HVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~-~p~~VIlLDEIEKa~~--------~vq~~Llq~le~G~l~d 621 (884)
... ...|.|.-+. -+..+.+.+.. ....|+|||||+.+.. ++-+.|+.+++.|.++
T Consensus 254 l~a---------g~~~~ge~e~-----~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~- 318 (852)
T TIGR03345 254 LQA---------GASVKGEFEN-----RLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELR- 318 (852)
T ss_pred hhc---------ccccchHHHH-----HHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeE-
Confidence 211 0112111111 12233333332 3467999999998742 3445788999887554
Q ss_pred CCCeEeecCceEEEEecC
Q 002758 622 SYGREVSVSNAIFVTASS 639 (884)
Q Consensus 622 s~Gr~V~~~naI~IlTSN 639 (884)
+|.+|+
T Consensus 319 ------------~IgaTT 324 (852)
T TIGR03345 319 ------------TIAATT 324 (852)
T ss_pred ------------EEEecC
Confidence 788776
No 131
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.82 E-value=7.6e-08 Score=108.33 Aligned_cols=148 Identities=13% Similarity=0.070 Sum_probs=81.2
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCC------cceEEeccCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK------ENFICADLCPQ 551 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~------~~fi~id~s~~ 551 (884)
+.++|.++.++.|...+..+..+. . +..++++||+|+|||.+++++++.+.... -.++.++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~----~-----~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGS----R-----PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCC----C-----CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 568999999999999988765431 1 12699999999999999999998774221 35778887643
Q ss_pred CCCCCCCCCccccccc--cccccccccc---hHHHHHHHHHh-CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCe
Q 002758 552 DGEMNNPPKFYHQVVG--GDSVQFRGKT---LADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGR 625 (884)
Q Consensus 552 ~~e~~~~s~L~p~gy~--G~~~g~rgk~---~l~~L~eal~~-~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr 625 (884)
.....-...+. .... |.....++.. ....+.+.+.. ++..||+|||+|.+....+..|..+++-.....
T Consensus 86 ~~~~~~~~~i~-~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~---- 160 (365)
T TIGR02928 86 DTLYQVLVELA-NQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD---- 160 (365)
T ss_pred CCHHHHHHHHH-HHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC----
Confidence 21000000000 0000 1111111111 12344455543 445789999999994222333333332211111
Q ss_pred EeecCceEEEEecCC
Q 002758 626 EVSVSNAIFVTASSF 640 (884)
Q Consensus 626 ~V~~~naI~IlTSN~ 640 (884)
..-.+.++|+++|.
T Consensus 161 -~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 161 -LDNAKVGVIGISND 174 (365)
T ss_pred -CCCCeEEEEEEECC
Confidence 11135667777763
No 132
>PHA02244 ATPase-like protein
Probab=98.81 E-value=4.2e-08 Score=109.95 Aligned_cols=135 Identities=13% Similarity=0.059 Sum_probs=90.9
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
...+|+...+..+...+.+... ....++|.||+|||||++|++||..+ ..+|+.++.-..
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~-----------~~~PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~l~d------ 155 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVN-----------ANIPVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNAIMD------ 155 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHh-----------cCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecChH------
Confidence 3456777766655555554422 11259999999999999999999986 457887763210
Q ss_pred CCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEe
Q 002758 558 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 637 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlT 637 (884)
...++ ++......| ..+.+..+++. ..+++||||+.+++.++..|..+++++.+....++...-.+..+|+|
T Consensus 156 ~~~L~--G~i~~~g~~----~dgpLl~A~~~--GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIAT 227 (383)
T PHA02244 156 EFELK--GFIDANGKF----HETPFYEAFKK--GGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISA 227 (383)
T ss_pred HHhhc--ccccccccc----cchHHHHHhhc--CCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEe
Confidence 00111 121111111 11466777654 58999999999999999999999999877765554333357789999
Q ss_pred cCC
Q 002758 638 SSF 640 (884)
Q Consensus 638 SN~ 640 (884)
+|.
T Consensus 228 sN~ 230 (383)
T PHA02244 228 GNT 230 (383)
T ss_pred eCC
Confidence 997
No 133
>CHL00176 ftsH cell division protein; Validated
Probab=98.81 E-value=1.3e-07 Score=113.85 Aligned_cols=105 Identities=13% Similarity=0.104 Sum_probs=64.5
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
+.|.|.++++..+...+...+...... ....+.+..+||+||+|||||.+|++||... ..+|+.++++....
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~-~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~---- 254 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFT-AVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVE---- 254 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHh-hccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHH----
Confidence 458899988888877665432211100 0001122359999999999999999999976 56788887763211
Q ss_pred CCCccccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc
Q 002758 558 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA 602 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa 602 (884)
.+.|... ..+..+....+....+||||||||.+
T Consensus 255 -------~~~g~~~-----~~vr~lF~~A~~~~P~ILfIDEID~l 287 (638)
T CHL00176 255 -------MFVGVGA-----ARVRDLFKKAKENSPCIVFIDEIDAV 287 (638)
T ss_pred -------HhhhhhH-----HHHHHHHHHHhcCCCcEEEEecchhh
Confidence 1112111 11233334444555689999999976
No 134
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.80 E-value=9e-08 Score=112.72 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=62.4
Q ss_pred cCccchHHHHHHHHHHHHHhcCC--CCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGH--EDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 556 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~--~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~ 556 (884)
.|+|++++...+...+...+... ..... +.+..+||+||+|||||++|++||... ..+|+.++.+....
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~---~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~--- 126 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGA---KIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVE--- 126 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCC---CCCCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHH---
Confidence 46888888877776665322100 00000 112249999999999999999999876 45777777653211
Q ss_pred CCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccC
Q 002758 557 NPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD 603 (884)
Q Consensus 557 ~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~ 603 (884)
.|.|.... .+..+....+....+||||||||.+.
T Consensus 127 --------~~~g~~~~-----~l~~~f~~a~~~~p~Il~iDEid~l~ 160 (495)
T TIGR01241 127 --------MFVGVGAS-----RVRDLFEQAKKNAPCIIFIDEIDAVG 160 (495)
T ss_pred --------HHhcccHH-----HHHHHHHHHHhcCCCEEEEechhhhh
Confidence 11121111 12334444455556899999998763
No 135
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.80 E-value=5.8e-08 Score=112.10 Aligned_cols=97 Identities=20% Similarity=0.176 Sum_probs=62.9
Q ss_pred cCccchHHHHHHHHHHHHHh--------cCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 479 KIDWQDEAISVISQTIAQRR--------TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~r--------sg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
.|.|.+..+..|..++.... .|+.. +..+||+||+|||||.+|+++|..+ ...|+.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~--------p~gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~se 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKP--------PKGVILYGPPGTGKTLLAKAVANET---SATFLRVVGSE 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCC--------CcEEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecch
Confidence 35888888888888886421 12211 2259999999999999999999987 45678877553
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA 602 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa 602 (884)
.. ..|.|.... .+..+......+..+||||||||.+
T Consensus 253 L~-----------~k~~Ge~~~-----~vr~lF~~A~~~~P~ILfIDEID~l 288 (438)
T PTZ00361 253 LI-----------QKYLGDGPK-----LVRELFRVAEENAPSIVFIDEIDAI 288 (438)
T ss_pred hh-----------hhhcchHHH-----HHHHHHHHHHhCCCcEEeHHHHHHH
Confidence 21 123332221 1233334444455689999999864
No 136
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=1.9e-07 Score=105.21 Aligned_cols=134 Identities=17% Similarity=0.175 Sum_probs=82.6
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceE-EeccCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFI-CADLCPQD 552 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi-~id~s~~~ 552 (884)
..|+||++++..+..++...+. | -.+||+||.|+|||++|+.+|+.++.... +.. ...+...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl-------~-----ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c- 89 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKL-------H-----HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPAS- 89 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCC-------C-----eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCC-
Confidence 3689999999998888775432 2 25999999999999999999999976321 110 0011000
Q ss_pred CCCCCCCCcc----ccccc----c--cccc-c---cccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHH
Q 002758 553 GEMNNPPKFY----HQVVG----G--DSVQ-F---RGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAI 614 (884)
Q Consensus 553 ~e~~~~s~L~----p~gy~----G--~~~g-~---rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~l 614 (884)
.....+ +|++. . ...+ + ++...+..+.+.+.. ..+.||+|||+|.++...++.|++.|
T Consensus 90 ----~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~L 165 (351)
T PRK09112 90 ----PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTL 165 (351)
T ss_pred ----HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHH
Confidence 000001 22221 0 0000 0 111122334444443 45689999999999999999999999
Q ss_pred hCCeeeCCCCeEeecCceEEEEecC
Q 002758 615 QTGKLPDSYGREVSVSNAIFVTASS 639 (884)
Q Consensus 615 e~G~l~ds~Gr~V~~~naI~IlTSN 639 (884)
|+.. .+++||+.|+
T Consensus 166 EEpp-----------~~~~fiLit~ 179 (351)
T PRK09112 166 EEPP-----------ARALFILISH 179 (351)
T ss_pred hcCC-----------CCceEEEEEC
Confidence 9732 2566777765
No 137
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.1e-08 Score=112.71 Aligned_cols=130 Identities=16% Similarity=0.212 Sum_probs=82.1
Q ss_pred cCccchHHHHHHHHHHHHH-------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCC
Q 002758 479 KIDWQDEAISVISQTIAQR-------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ 551 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~-------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~ 551 (884)
.|.|-+..+..+...|... ..|+..++ | +||+||||||||.||+|||..+ .-+|+.|...+.
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~Ppr---G-----vLlHGPPGCGKT~lA~AiAgel---~vPf~~isApei 259 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPR---G-----VLLHGPPGCGKTSLANAIAGEL---GVPFLSISAPEI 259 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCC---c-----eeeeCCCCccHHHHHHHHhhhc---CCceEeecchhh
Confidence 3455555555555544432 34555443 3 9999999999999999999988 678988876632
Q ss_pred CCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCH-----------HHHHHHHHHHhCCeee
Q 002758 552 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV-----------HVQNSLSKAIQTGKLP 620 (884)
Q Consensus 552 ~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~-----------~vq~~Llq~le~G~l~ 620 (884)
- .||.|..+. -++.+.+....+-.+||||||||...| .+...|+.-|++=...
T Consensus 260 v-----------SGvSGESEk-----kiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~ 323 (802)
T KOG0733|consen 260 V-----------SGVSGESEK-----KIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE 323 (802)
T ss_pred h-----------cccCcccHH-----HHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc
Confidence 1 145554443 234444444445569999999997664 2444555556543322
Q ss_pred CCCCeEeecCceEEEEecCC
Q 002758 621 DSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 621 ds~Gr~V~~~naI~IlTSN~ 640 (884)
-..| ..++||.+||.
T Consensus 324 ~~~g-----~~VlVIgATnR 338 (802)
T KOG0733|consen 324 KTKG-----DPVLVIGATNR 338 (802)
T ss_pred ccCC-----CCeEEEecCCC
Confidence 2122 24789999985
No 138
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.75 E-value=2.3e-07 Score=103.67 Aligned_cols=112 Identities=10% Similarity=0.069 Sum_probs=68.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHH----
Q 002758 511 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL---- 586 (884)
Q Consensus 511 ~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal---- 586 (884)
.+.-++|+||+|||||.+|+++|..+ +-+|+.++.++... +|+|..+.. ..+.+..|-
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~s-----------k~vGEsEk~----IR~~F~~A~~~a~ 208 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELES-----------ENAGEPGKL----IRQRYREAADIIK 208 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhc-----------CcCCcHHHH----HHHHHHHHHHHhh
Confidence 34569999999999999999999998 56789888875332 455544431 223333332
Q ss_pred HhCCCeEEEEccccccCH-----------H-HHHHHHHHHhCCeeeCCCC---eEeecCceEEEEecCC
Q 002758 587 LKKPLSVVYLENVDKADV-----------H-VQNSLSKAIQTGKLPDSYG---REVSVSNAIFVTASSF 640 (884)
Q Consensus 587 ~~~p~~VIlLDEIEKa~~-----------~-vq~~Llq~le~G~l~ds~G---r~V~~~naI~IlTSN~ 640 (884)
.+...+||||||||.+-+ . +...|+..++.-...--.| ..-....++||.|+|.
T Consensus 209 ~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr 277 (413)
T PLN00020 209 KKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND 277 (413)
T ss_pred ccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC
Confidence 134469999999996532 1 2245666666311000000 0012345778888874
No 139
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.74 E-value=1.3e-07 Score=113.55 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=43.3
Q ss_pred HHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcC
Q 002758 471 TLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG 538 (884)
Q Consensus 471 ~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~g 538 (884)
.+.+.|.+.|+||++++..+..++...+ .++|+||+|+|||++|++||+.+..
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~~~---------------~~ll~G~pG~GKT~la~~la~~l~~ 63 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQKR---------------NVLLIGEPGVGKSMLAKAMAELLPD 63 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHcCC---------------CEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3445788899999999988877766321 5889999999999999999998854
No 140
>PRK05642 DNA replication initiation factor; Validated
Probab=98.74 E-value=2.6e-07 Score=98.49 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=44.5
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Q 002758 774 KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRG 842 (884)
Q Consensus 774 ~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~~~ 842 (884)
.++.++|++.+++.+++.+..... .+.+++++++||+...-- ..|.++..|+.+-.-+
T Consensus 159 l~~~l~~~~~e~~~~il~~ka~~~---------~~~l~~ev~~~L~~~~~~--d~r~l~~~l~~l~~~~ 216 (234)
T PRK05642 159 LVFQMRGLSDEDKLRALQLRASRR---------GLHLTDEVGHFILTRGTR--SMSALFDLLERLDQAS 216 (234)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence 467889999999999988654321 267999999999997432 5688999988886433
No 141
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.1e-07 Score=109.52 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=65.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
-+||+||+|||||.+|+++|..+ +.+|+.++.+.+.+ .|+|-.+. .+..+....++...+|
T Consensus 278 giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~s-----------k~vGesek-----~ir~~F~~A~~~~p~i 338 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLS-----------KWVGESEK-----NIRELFEKARKLAPSI 338 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHhc-----------cccchHHH-----HHHHHHHHHHcCCCcE
Confidence 69999999999999999999965 67899999884432 34444333 1233444444555799
Q ss_pred EEEccccccCH-----------HHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 594 VYLENVDKADV-----------HVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 594 IlLDEIEKa~~-----------~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
|||||||++-+ .+.+.|+..|+.-. ...++++|.+||.
T Consensus 339 iFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~~~~v~vi~aTN~ 387 (494)
T COG0464 339 IFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------KAEGVLVIAATNR 387 (494)
T ss_pred EEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC---------ccCceEEEecCCC
Confidence 99999997532 35555555554321 1124667777773
No 142
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.6e-08 Score=115.06 Aligned_cols=126 Identities=21% Similarity=0.188 Sum_probs=87.1
Q ss_pred cCccchHHHHHHHHHHHHH--------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 479 KIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~--------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
.|.+++++-.++-.+|.+. +.|+..| . =+||+||||||||.||+|+|..- +-+||.+-..+
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~P---s-----GvLL~GPPGCGKTLlAKAVANEa---g~NFisVKGPE 580 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAP---S-----GVLLCGPPGCGKTLLAKAVANEA---GANFISVKGPE 580 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCC---C-----ceEEeCCCCccHHHHHHHHhhhc---cCceEeecCHH
Confidence 3556666666666666542 3444332 2 39999999999999999999865 77899887663
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCH-----------HHHHHHHHHHhCCee
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV-----------HVQNSLSKAIQTGKL 619 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~-----------~vq~~Llq~le~G~l 619 (884)
.- ..|+|-.+. .+..+....+.+-.+||||||||.+-| .+.|.||.-|+...-
T Consensus 581 Ll-----------NkYVGESEr-----AVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~ 644 (802)
T KOG0733|consen 581 LL-----------NKYVGESER-----AVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE 644 (802)
T ss_pred HH-----------HHHhhhHHH-----HHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccc
Confidence 21 146665543 345566666666779999999997643 577888888875421
Q ss_pred eCCCCeEeecCceEEEEecCC
Q 002758 620 PDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 620 ~ds~Gr~V~~~naI~IlTSN~ 640 (884)
| .+++||.+||.
T Consensus 645 -----R----~gV~viaATNR 656 (802)
T KOG0733|consen 645 -----R----RGVYVIAATNR 656 (802)
T ss_pred -----c----cceEEEeecCC
Confidence 1 35778999995
No 143
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.73 E-value=3.6e-07 Score=100.53 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=57.1
Q ss_pred cChhHHhcccceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Q 002758 763 SWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRG 842 (884)
Q Consensus 763 ~f~~efl~rID~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~~~ 842 (884)
..+.|||||+ -||.-+|++.+++++|+....... .+.++++|+++|+.-+-. ++| +|.-+.|.++
T Consensus 344 GIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee---------~i~l~~~Ale~L~~ig~e----tSL-RYa~qLL~pa 408 (450)
T COG1224 344 GIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEE---------DIELSDDALEYLTDIGEE----TSL-RYAVQLLTPA 408 (450)
T ss_pred CCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhh---------ccccCHHHHHHHHhhchh----hhH-HHHHHhccHH
Confidence 6788999998 589999999999999998876543 688999999999987542 223 4556667777
Q ss_pred HHHHHHhcC
Q 002758 843 FLDAQEKYN 851 (884)
Q Consensus 843 L~~~~~~~~ 851 (884)
..-++.+++
T Consensus 409 ~iiA~~rg~ 417 (450)
T COG1224 409 SIIAKRRGS 417 (450)
T ss_pred HHHHHHhCC
Confidence 666666644
No 144
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.72 E-value=3.5e-07 Score=93.75 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=64.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCc----ceE-EeccCCCCCCCCCCCCccccccc--cccccccccchHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKE----NFI-CADLCPQDGEMNNPPKFYHQVVG--GDSVQFRGKTLADYVAWEL 586 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi-~id~s~~~~e~~~~s~L~p~gy~--G~~~g~rgk~~l~~L~eal 586 (884)
.+||+||+|+|||++|+++|+.+.+... +.. +.+|..... .. ++.+. ....+..+...+..+.+.+
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~-~~------~~d~~~~~~~~~~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEA-GN------HPDLHRLEPEGQSIKVDQVRELVEFL 88 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CC------CCcEEEeccccCcCCHHHHHHHHHHH
Confidence 6999999999999999999999976411 100 000000000 00 01110 0000001111223345555
Q ss_pred Hh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecC
Q 002758 587 LK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASS 639 (884)
Q Consensus 587 ~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN 639 (884)
.. .++.||+|||+|+++...++.|+..||+.. .+++||++++
T Consensus 89 ~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~-----------~~~~~il~~~ 134 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPP-----------PNTLFILITP 134 (188)
T ss_pred ccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCC-----------CCeEEEEEEC
Confidence 44 446799999999999999999999998731 2567888775
No 145
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.1e-07 Score=105.77 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=86.9
Q ss_pred hccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCC
Q 002758 477 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 556 (884)
Q Consensus 477 ~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~ 556 (884)
.+.|+||++++..+..++...+. +-.+||+||.|+||+.+|.++|+.+++....-.+..+. .. ...
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl------------~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~-~~-~~~ 68 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRI------------APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRR-LE-EGN 68 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCC------------CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcc-cc-cCC
Confidence 35789999999999988876543 12699999999999999999999998754100000111 10 012
Q ss_pred CCCCcc-ccccc--ccc------------c---cccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHH
Q 002758 557 NPPKFY-HQVVG--GDS------------V---QFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAI 614 (884)
Q Consensus 557 ~~s~L~-p~gy~--G~~------------~---g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~l 614 (884)
+++-++ .|.|. |.. . ..++...++.+.+.+... .+.||+||++|+|+...+|.|++.|
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~L 148 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTL 148 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHH
Confidence 222111 22211 110 0 001111234555556544 4689999999999999999999999
Q ss_pred hCCeeeCCCCeEeecCceEEEEecC
Q 002758 615 QTGKLPDSYGREVSVSNAIFVTASS 639 (884)
Q Consensus 615 e~G~l~ds~Gr~V~~~naI~IlTSN 639 (884)
|+-- +++||++|+
T Consensus 149 EEPp------------~~~fILi~~ 161 (314)
T PRK07399 149 EEPG------------NGTLILIAP 161 (314)
T ss_pred hCCC------------CCeEEEEEC
Confidence 9731 456777776
No 146
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=7.3e-08 Score=109.15 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=83.5
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc-c---e----EEe---
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE-N---F----ICA--- 546 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~-~---f----i~i--- 546 (884)
..|+||++++..+.+++...+. | -.+||+||.|+||+++|.++|+.++.... . + ..+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl-------~-----HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~ 86 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRL-------H-----HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID 86 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCC-------C-----ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC
Confidence 3689999999999988876443 1 25999999999999999999999985431 0 0 000
Q ss_pred -ccCC---CCCCCCCCCCc-cccccccccccc---cccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHH
Q 002758 547 -DLCP---QDGEMNNPPKF-YHQVVGGDSVQF---RGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAI 614 (884)
Q Consensus 547 -d~s~---~~~e~~~~s~L-~p~gy~G~~~g~---rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~l 614 (884)
+|.. ... ..+++-. +.+.+.+....+ ++...+..+...+.. ..+.||+|||+|.+++..+|.|++.+
T Consensus 87 ~~c~~c~~i~~-~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~L 165 (365)
T PRK07471 87 PDHPVARRIAA-GAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVL 165 (365)
T ss_pred CCChHHHHHHc-cCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHH
Confidence 0110 000 1111111 111110000000 111112333333332 34579999999999999999999999
Q ss_pred hCCeeeCCCCeEeecCceEEEEecCC
Q 002758 615 QTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 615 e~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
|+.. .+++||++|+-
T Consensus 166 Eepp-----------~~~~~IL~t~~ 180 (365)
T PRK07471 166 EEPP-----------ARSLFLLVSHA 180 (365)
T ss_pred hcCC-----------CCeEEEEEECC
Confidence 9742 25667777764
No 147
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=5.9e-08 Score=102.01 Aligned_cols=102 Identities=22% Similarity=0.197 Sum_probs=74.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEE
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVV 594 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VI 594 (884)
+|++||+|||||.||+|+|..- ...||++..+++- +.|.|.... .+..+..-.+++..+||
T Consensus 192 vllygppg~gktml~kava~~t---~a~firvvgsefv-----------qkylgegpr-----mvrdvfrlakenapsii 252 (408)
T KOG0727|consen 192 VLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV-----------QKYLGEGPR-----MVRDVFRLAKENAPSII 252 (408)
T ss_pred eEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHH-----------HHHhccCcH-----HHHHHHHHHhccCCcEE
Confidence 9999999999999999999865 6789999887431 244443222 33455555567778999
Q ss_pred EEccccc-----------cCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCC
Q 002758 595 YLENVDK-----------ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFV 641 (884)
Q Consensus 595 lLDEIEK-----------a~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g 641 (884)
||||||. ++.++|..|+.++..-.=.|. . .|+-+||+||..
T Consensus 253 fideidaiatkrfdaqtgadrevqril~ellnqmdgfdq---~---~nvkvimatnra 304 (408)
T KOG0727|consen 253 FIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ---T---TNVKVIMATNRA 304 (408)
T ss_pred EeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc---c---cceEEEEecCcc
Confidence 9999984 678999999999874321121 1 356699999963
No 148
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.69 E-value=1.1e-07 Score=104.76 Aligned_cols=137 Identities=16% Similarity=0.050 Sum_probs=81.0
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec-----cCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD-----LCPQDG 553 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id-----~s~~~~ 553 (884)
.++++++++..+...+..... .| -.+||+||+|+|||++|.+||+.+++......... |.....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~------~~-----halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR------LP-----HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC------CC-----ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 456777777666666554321 11 14999999999999999999999997652111100 000000
Q ss_pred CCC-CCCCccccccccccccccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 554 EMN-NPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 554 e~~-~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
..+ +...+.|.+..+.+ .....+..+.+.... .++.||+|||+|.++.+.++.|++.+|+..
T Consensus 71 ~~~~d~lel~~s~~~~~~---i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~---------- 137 (325)
T COG0470 71 GNHPDFLELNPSDLRKID---IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPP---------- 137 (325)
T ss_pred cCCCceEEecccccCCCc---chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCC----------
Confidence 000 00000011111100 011123344444433 347899999999999999999999999743
Q ss_pred cCceEEEEecCC
Q 002758 629 VSNAIFVTASSF 640 (884)
Q Consensus 629 ~~naI~IlTSN~ 640 (884)
.++.||++||.
T Consensus 138 -~~~~~il~~n~ 148 (325)
T COG0470 138 -KNTRFILITND 148 (325)
T ss_pred -CCeEEEEEcCC
Confidence 47889999993
No 149
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.69 E-value=3.8e-07 Score=110.15 Aligned_cols=144 Identities=10% Similarity=0.071 Sum_probs=86.6
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCC-------CcceEEeccCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 550 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs-------~~~fi~id~s~ 550 (884)
+++++.++-+..|+..|..+..+. ++.. .|+++|+||||||.+++.+.+.|-.. .-.+++|+|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkgs----gpnn----vLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQS----GSNQ----ILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcC----CCCc----eEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 779999999999999998876532 2222 57899999999999999887766311 13567888863
Q ss_pred CCCCCCCCCCcccccccccccccccc---chHHHHHHHHHh--CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCe
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGK---TLADYVAWELLK--KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGR 625 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk---~~l~~L~eal~~--~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr 625 (884)
... ....-..+-..+.+... .+|. ..+..+...+.. ....||+|||||.+....|..|+++++--... +
T Consensus 827 Lst-p~sIYqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s---~- 900 (1164)
T PTZ00112 827 VVH-PNAAYQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKI---N- 900 (1164)
T ss_pred cCC-HHHHHHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhcc---C-
Confidence 221 00000000000101110 0111 123444444422 22458999999999877788888888843221 1
Q ss_pred EeecCceEEEEecC
Q 002758 626 EVSVSNAIFVTASS 639 (884)
Q Consensus 626 ~V~~~naI~IlTSN 639 (884)
...+||+.+|
T Consensus 901 ----SKLiLIGISN 910 (1164)
T PTZ00112 901 ----SKLVLIAISN 910 (1164)
T ss_pred ----CeEEEEEecC
Confidence 2466888887
No 150
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.68 E-value=3.9e-08 Score=102.35 Aligned_cols=144 Identities=18% Similarity=0.204 Sum_probs=79.2
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
..|+||+.++.++.-+.. |. -.+||.||+|+|||.+|++|+.+|=. +-.-.+-+... .+.
T Consensus 3 ~dI~GQe~aKrAL~iAAa----G~-----------h~lLl~GppGtGKTmlA~~l~~lLP~----l~~~e~le~~~-i~s 62 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA----GG-----------HHLLLIGPPGTGKTMLARRLPSLLPP----LTEEEALEVSK-IYS 62 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH----CC-------------EEEES-CCCTHHHHHHHHHHCS------CCEECCESS---S-T
T ss_pred hhhcCcHHHHHHHHHHHc----CC-----------CCeEEECCCCCCHHHHHHHHHHhCCC----CchHHHhhhcc-ccc
Confidence 479999999877655433 32 16999999999999999999987621 11111111000 000
Q ss_pred CCCcc-cccccccccccccc---chHHHHH--------HHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCC-CC
Q 002758 558 PPKFY-HQVVGGDSVQFRGK---TLADYVA--------WELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS-YG 624 (884)
Q Consensus 558 ~s~L~-p~gy~G~~~g~rgk---~~l~~L~--------eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds-~G 624 (884)
...+. ..... ...-||.- .....|. +++....++|+||||+-..++.+.+.|++.|++|+++.. .|
T Consensus 63 ~~~~~~~~~~~-~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~ 141 (206)
T PF01078_consen 63 VAGLGPDEGLI-RQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAG 141 (206)
T ss_dssp T---S---EEE-E---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETT
T ss_pred cccCCCCCcee-cCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECC
Confidence 00000 00000 00001100 0001111 234445678999999999999999999999999988764 34
Q ss_pred eEeec-CceEEEEecCCCc
Q 002758 625 REVSV-SNAIFVTASSFVE 642 (884)
Q Consensus 625 r~V~~-~naI~IlTSN~g~ 642 (884)
..+.+ .+.++|+|+|...
T Consensus 142 ~~~~~Pa~f~lv~a~NPcp 160 (206)
T PF01078_consen 142 GSVTYPARFLLVAAMNPCP 160 (206)
T ss_dssp EEEEEB--EEEEEEE-S--
T ss_pred ceEEEecccEEEEEecccc
Confidence 55555 3678999999743
No 151
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.65 E-value=8e-07 Score=99.71 Aligned_cols=151 Identities=18% Similarity=0.215 Sum_probs=95.8
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcC----CCcceEEecc----CC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG----GKENFICADL----CP 550 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~g----s~~~fi~id~----s~ 550 (884)
.|+|+++++..|+..+.....|...++ ..++|.||+|+|||++|++||+.+-. .+.+++.+.. +.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r-------~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp 124 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERK-------QILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESP 124 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCC-------cEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCC
Confidence 699999999999999988876543322 26999999999999999999998832 1336676665 31
Q ss_pred CCCCCCCCCCcccc-------------------------------cccccccccc--------------cc-------c-
Q 002758 551 QDGEMNNPPKFYHQ-------------------------------VVGGDSVQFR--------------GK-------T- 577 (884)
Q Consensus 551 ~~~e~~~~s~L~p~-------------------------------gy~G~~~g~r--------------gk-------~- 577 (884)
... ++-.|+|+ +|.|.-..+. |+ .
T Consensus 125 ~~e---~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~q 201 (361)
T smart00763 125 MHE---DPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQ 201 (361)
T ss_pred Ccc---CCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcc
Confidence 110 00111111 1111110000 00 0
Q ss_pred hHHHHH----------------------HHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCC-CeEeecCceEE
Q 002758 578 LADYVA----------------------WELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY-GREVSVSNAIF 634 (884)
Q Consensus 578 ~l~~L~----------------------eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~-Gr~V~~~naI~ 634 (884)
-...|+ +++.+.-++|+-|+||.|++..+++.|+.++++|.+.... +-.+.+ +.+|
T Consensus 202 di~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~-d~li 280 (361)
T smart00763 202 DISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPI-DGLI 280 (361)
T ss_pred cHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCccccccc-ceEE
Confidence 001111 1222333578999999999999999999999999997533 234554 4588
Q ss_pred EEecCC
Q 002758 635 VTASSF 640 (884)
Q Consensus 635 IlTSN~ 640 (884)
|+|||-
T Consensus 281 ia~sNe 286 (361)
T smart00763 281 IAHSNE 286 (361)
T ss_pred EEeCCH
Confidence 888883
No 152
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.64 E-value=3.8e-07 Score=101.71 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=35.8
Q ss_pred cChhHHhcccceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcc
Q 002758 763 SWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAY 823 (884)
Q Consensus 763 ~f~~efl~rID~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~ 823 (884)
+.+.|||+|+ -+|.-.|++.+++++|+....... .+.++++|++.|..-+.
T Consensus 331 GiP~DlLDRl-lII~t~py~~~ei~~Il~iR~~~E---------~v~i~~~al~~L~~ig~ 381 (398)
T PF06068_consen 331 GIPLDLLDRL-LIIRTKPYSEEEIKQILKIRAKEE---------DVEISEDALDLLTKIGV 381 (398)
T ss_dssp T--HHHHTTE-EEEEE----HHHHHHHHHHHHHHC---------T--B-HHHHHHHHHHHH
T ss_pred CCCcchHhhc-EEEECCCCCHHHHHHHHHhhhhhh---------cCcCCHHHHHHHHHHhh
Confidence 6788999998 589999999999999998877552 57899999999998654
No 153
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.64 E-value=1.8e-07 Score=112.49 Aligned_cols=52 Identities=29% Similarity=0.367 Sum_probs=42.7
Q ss_pred HHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHc
Q 002758 471 TLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 471 ~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
.+...+.+.|+||++++..|..++...+ .++|+||+|+|||++|++|++.++
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~~~---------------~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQRR---------------HVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHhCC---------------eEEEECCCCCcHHHHHHHHHHHcC
Confidence 4445677789999999998887766421 599999999999999999999875
No 154
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.63 E-value=4.2e-07 Score=111.39 Aligned_cols=152 Identities=9% Similarity=0.045 Sum_probs=96.8
Q ss_pred HHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCC-------CCC----CCCCCceEEEEEcCCCCchHHHHHHHHHHHc
Q 002758 469 WKTLFRALTEKIDWQDEAISVISQTIAQRRTGHED-------HHG----ASPRRDIWFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 469 lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~-------~~~----p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
++.|.+.+.-.|+|++.++.+|+-++... ..+ +.+ ..-++++++||.|++|+||+.+|+++++...
T Consensus 441 ~~~L~~SiaP~I~G~e~vK~ailL~L~gG---~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lsp 517 (915)
T PTZ00111 441 YRILLDSFAPSIKARNNVKIGLLCQLFSG---NKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSP 517 (915)
T ss_pred HHHHHHHhCCeEECCHHHHHHHHHHHhcC---CccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCC
Confidence 45556667788999999988876555432 211 101 1235688999999999999999999998643
Q ss_pred CC----CcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHH
Q 002758 538 GG----KENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKA 613 (884)
Q Consensus 538 gs----~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~ 613 (884)
+. +.+++.+++..... +.+...| . + ..-.+++-....++++||||+++++..|..|+++
T Consensus 518 R~~ytsG~~~s~vgLTa~~~------------~~d~~tG---~-~-~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEa 580 (915)
T PTZ00111 518 RSIYTSGKSSSSVGLTASIK------------FNESDNG---R-A-MIQPGAVVLANGGVCCIDELDKCHNESRLSLYEV 580 (915)
T ss_pred ccccCCCCCCccccccchhh------------hcccccC---c-c-cccCCcEEEcCCCeEEecchhhCCHHHHHHHHHH
Confidence 22 24445444442100 0000000 0 0 0112234444568999999999999999999999
Q ss_pred HhCCeeeCCC-CeEeec-CceEEEEecCC
Q 002758 614 IQTGKLPDSY-GREVSV-SNAIFVTASSF 640 (884)
Q Consensus 614 le~G~l~ds~-Gr~V~~-~naI~IlTSN~ 640 (884)
||.+.++... |-...+ .++.||+++|.
T Consensus 581 MEqqtIsI~KaGi~~tL~ar~rVIAAaNP 609 (915)
T PTZ00111 581 MEQQTVTIAKAGIVATLKAETAILASCNP 609 (915)
T ss_pred HhCCEEEEecCCcceecCCCeEEEEEcCC
Confidence 9999886432 432333 35778888885
No 155
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.63 E-value=2.3e-07 Score=87.97 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=80.3
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCC
Q 002758 481 DWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPK 560 (884)
Q Consensus 481 iGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~ 560 (884)
+|++.++..|...+... . ..+++++||+|+|||++++++++.+.....+++.+++...... ..
T Consensus 1 ~~~~~~~~~i~~~~~~~-~------------~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~----~~ 63 (151)
T cd00009 1 VGQEEAIEALREALELP-P------------PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG----LV 63 (151)
T ss_pred CchHHHHHHHHHHHhCC-C------------CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh----hH
Confidence 35666666666554421 0 1279999999999999999999998766677888887632110 00
Q ss_pred ccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 561 FYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 561 L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
+ ......................+|+|||++.+.+..+..+++.++...... ....++.+|+++|.
T Consensus 64 -----~----~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~ 129 (151)
T cd00009 64 -----V----AELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNR 129 (151)
T ss_pred -----H----HHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCc
Confidence 0 000000000011112223446899999999998889999999998753321 12246778888875
No 156
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.62 E-value=1e-06 Score=100.40 Aligned_cols=143 Identities=17% Similarity=0.117 Sum_probs=83.6
Q ss_pred hccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCC--CcceEEeccCCCCCC
Q 002758 477 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG--KENFICADLCPQDGE 554 (884)
Q Consensus 477 ~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs--~~~fi~id~s~~~~e 554 (884)
-+.++|.++-+..|...+.....+.. +..++++||+|+|||.+++.+++.+... .-.++.+++......
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~---------~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSR---------PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCC---------CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 35688999888999888876543211 1268999999999999999999887533 356788887643210
Q ss_pred CCCCCCcccccccccccccccc---chHHHHHHHHHh-CCCeEEEEccccccC----HHHHHHHHHHHhCCeeeCCCCeE
Q 002758 555 MNNPPKFYHQVVGGDSVQFRGK---TLADYVAWELLK-KPLSVVYLENVDKAD----VHVQNSLSKAIQTGKLPDSYGRE 626 (884)
Q Consensus 555 ~~~~s~L~p~gy~G~~~g~rgk---~~l~~L~eal~~-~p~~VIlLDEIEKa~----~~vq~~Llq~le~G~l~ds~Gr~ 626 (884)
..-...+. ..+.+.....++. .....+.+.+.. ....||+|||+|.+. .+....|++.++.- .+
T Consensus 100 ~~~~~~i~-~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-----~~-- 171 (394)
T PRK00411 100 YAIFSEIA-RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-----PG-- 171 (394)
T ss_pred HHHHHHHH-HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-----CC--
Confidence 00000000 0011111111111 123455555554 345789999999875 45556666655531 11
Q ss_pred eecCceEEEEecC
Q 002758 627 VSVSNAIFVTASS 639 (884)
Q Consensus 627 V~~~naI~IlTSN 639 (884)
.++.+|+++|
T Consensus 172 ---~~v~vI~i~~ 181 (394)
T PRK00411 172 ---ARIGVIGISS 181 (394)
T ss_pred ---CeEEEEEEEC
Confidence 1455777776
No 157
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.62 E-value=4.7e-07 Score=104.01 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=44.1
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Q 002758 774 KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVR 841 (884)
Q Consensus 774 ~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~~ 841 (884)
.+|.|.|++.+...+|+.+.+... .+.++++++++|+...-. ..|.|+..|.++..-
T Consensus 261 ~~v~i~~pd~~~r~~il~~~~~~~---------~~~l~~e~l~~ia~~~~~--~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 261 LVVDIEPPDLETRLAILQKKAEEE---------GLELPDEVLEFIAKNIRS--NVRELEGALNRLLAY 317 (405)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 479999999999999998877652 467899999999976322 457777777776543
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.61 E-value=3.7e-07 Score=111.93 Aligned_cols=129 Identities=17% Similarity=0.198 Sum_probs=78.9
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
+.++|.+..+..+...+.+.+. . .+||+||+|||||.+|++||..+.....++...++..+.- +
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~---------~----n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l---~ 249 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK---------N----NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL---D 249 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC---------C----CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec---c
Confidence 4699999988888877665211 1 5789999999999999999987754433333233332110 1
Q ss_pred CCCcc-ccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc---------CHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 558 PPKFY-HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA---------DVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 558 ~s~L~-p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa---------~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
...++ ...|.|..+. .+..+...+.+....|||||||+.+ ..++.+.|..++..|++
T Consensus 250 ~~~llaG~~~~Ge~e~-----rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i-------- 316 (758)
T PRK11034 250 IGSLLAGTKYRGDFEK-----RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKI-------- 316 (758)
T ss_pred HHHHhcccchhhhHHH-----HHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCe--------
Confidence 11111 1122221111 1234445555666789999999965 24566778888876643
Q ss_pred ecCceEEEEecCC
Q 002758 628 SVSNAIFVTASSF 640 (884)
Q Consensus 628 ~~~naI~IlTSN~ 640 (884)
.+|.+|+.
T Consensus 317 -----~vIgATt~ 324 (758)
T PRK11034 317 -----RVIGSTTY 324 (758)
T ss_pred -----EEEecCCh
Confidence 37777763
No 159
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=1.8e-07 Score=103.77 Aligned_cols=124 Identities=20% Similarity=0.190 Sum_probs=79.9
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~ 557 (884)
+.|+||+.+++.+..++...+. +-.+||+||.|+||+++|+++|+.++.....-.+.|+-
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~------------~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~-------- 63 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRF------------SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDII-------- 63 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCC------------CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeE--------
Confidence 4689999999998888754322 12689999999999999999999986532110001110
Q ss_pred CCCccccccccccccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceE
Q 002758 558 PPKFYHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAI 633 (884)
Q Consensus 558 ~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI 633 (884)
.+.+ +.| ...+...+..+.+.+... .+.|++||++|+++...+|.|++.||+-. .+++
T Consensus 64 --~~~~--~~~---~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp-----------~~t~ 125 (313)
T PRK05564 64 --EFKP--INK---KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP-----------KGVF 125 (313)
T ss_pred --Eecc--ccC---CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCC-----------CCeE
Confidence 0000 001 001111123333433343 45799999999999999999999999731 3567
Q ss_pred EEEecC
Q 002758 634 FVTASS 639 (884)
Q Consensus 634 ~IlTSN 639 (884)
||++|+
T Consensus 126 ~il~~~ 131 (313)
T PRK05564 126 IILLCE 131 (313)
T ss_pred EEEEeC
Confidence 887775
No 160
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.60 E-value=8.6e-08 Score=93.63 Aligned_cols=109 Identities=20% Similarity=0.198 Sum_probs=78.9
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCC
Q 002758 481 DWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPK 560 (884)
Q Consensus 481 iGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~ 560 (884)
+|+..+++.+.+.+.+... ....++++|++|+||+.+|++|+..-.....+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~-----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK-----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC-----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHHhC-----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 5888899999999988754 123699999999999999999999776656677766665210
Q ss_pred ccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 561 FYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 561 L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
.+.+.. ...+.++|+|||.+++..|..|++.|+... . .++.+|+||+.
T Consensus 62 ------------------~~~l~~----a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~-~---------~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 ------------------AELLEQ----AKGGTLYLKNIDRLSPEAQRRLLDLLKRQE-R---------SNVRLIASSSQ 109 (138)
T ss_dssp ------------------HHHHHH----CTTSEEEEECGCCS-HHHHHHHHHHHHHCT-T---------TTSEEEEEECC
T ss_pred ------------------HHHHHH----cCCCEEEECChHHCCHHHHHHHHHHHHhcC-C---------CCeEEEEEeCC
Confidence 012222 356899999999999999999999999743 1 24568888875
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.58 E-value=5.7e-07 Score=112.22 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=79.3
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCC-------CcceEEeccCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 550 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs-------~~~fi~id~s~ 550 (884)
+.|+||++-++.+...+.+... + .++|+||+|||||++|++||..+... ...++.+|++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~---------~----n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK---------N----NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc---------C----ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 4699999877777666544211 1 58899999999999999999988532 35677777663
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHh-CCCeEEEEccccccC--------HHHHHHHHHHHhCCeeeC
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKAD--------VHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~-~p~~VIlLDEIEKa~--------~~vq~~Llq~le~G~l~d 621 (884)
... ...|.|.-+. .+..+...+.. ....|+|||||+.+. .+.++.|+.+++.|.+.
T Consensus 245 l~a---------g~~~~g~~e~-----~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~- 309 (857)
T PRK10865 245 LVA---------GAKYRGEFEE-----RLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELH- 309 (857)
T ss_pred hhh---------ccchhhhhHH-----HHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCe-
Confidence 211 0112221111 12233333332 346799999999764 24788899888877543
Q ss_pred CCCeEeecCceEEEEecCC
Q 002758 622 SYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 622 s~Gr~V~~~naI~IlTSN~ 640 (884)
+|.+|+.
T Consensus 310 ------------~IgaTt~ 316 (857)
T PRK10865 310 ------------CVGATTL 316 (857)
T ss_pred ------------EEEcCCC
Confidence 8887774
No 162
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.56 E-value=1.7e-06 Score=91.51 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=42.2
Q ss_pred hHHhcccc--eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q 002758 766 QDFFNQRV--KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLV 840 (884)
Q Consensus 766 ~efl~rID--~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~ 840 (884)
+++..|+. .++...|++.++..+|+.+...+. .+.++++++++|+... +...|.|+..|.++..
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~---------~~~l~~~v~~~l~~~~--~~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKER---------GIELPEEVIEYLARRF--RRDVRELEGALNRLDA 214 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHT---------T--S-HHHHHHHHHHT--TSSHHHHHHHHHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHh---------CCCCcHHHHHHHHHhh--cCCHHHHHHHHHHHHH
Confidence 34444432 368889999999999998887643 3569999999999973 2367889998888765
No 163
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.56 E-value=8.5e-07 Score=106.45 Aligned_cols=113 Identities=20% Similarity=0.174 Sum_probs=72.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccc---ccc-ccchHHHHHHHHHhC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSV---QFR-GKTLADYVAWELLKK 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~---g~r-gk~~l~~L~eal~~~ 589 (884)
.+||.|++|+|||++|++|+..+-+ ..+|+++.+.... ..| +|... .+. |.. ..-.+.+.+.
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~t~------d~L-----~G~idl~~~~~~g~~--~~~~G~L~~A 83 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPP-IMPFVELPLGVTE------DRL-----IGGIDVEESLAGGQR--VTQPGLLDEA 83 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCcccch------hhc-----ccchhhhhhhhcCcc--cCCCCCeeeC
Confidence 7999999999999999999998743 3478888754211 111 12110 000 000 0000112233
Q ss_pred CCeEEEEccccccCHHHHHHHHHHHhCCeeeCC-CCeEeec-CceEEEEecCC
Q 002758 590 PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS-YGREVSV-SNAIFVTASSF 640 (884)
Q Consensus 590 p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds-~Gr~V~~-~naI~IlTSN~ 640 (884)
..+|+|||||+++++.+|+.|+++|++|.++.. .|....+ .+..+|.|+|.
T Consensus 84 ~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np 136 (589)
T TIGR02031 84 PRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDP 136 (589)
T ss_pred CCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCC
Confidence 457999999999999999999999999986542 2433332 24667777774
No 164
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=98.55 E-value=2.4e-07 Score=82.60 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEE
Q 002758 781 FNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVK 859 (884)
Q Consensus 781 Ld~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~-gaR~le~wIE~vl~~~L~~~~~~~~~~~~~~v~ 859 (884)
|+.+++.+|+..+|.+..+++..+++.|.++++++++|+..+|.+. |||+|+++|++.+.+.|++....+....+..|+
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~v~ 80 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAILSGKIKEGDTVR 80 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCSCTTCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCEee
Confidence 5789999999999999999998899999999999999999999877 999999999999999999999998877777776
Q ss_pred E
Q 002758 860 L 860 (884)
Q Consensus 860 L 860 (884)
+
T Consensus 81 v 81 (81)
T PF10431_consen 81 V 81 (81)
T ss_dssp E
T ss_pred C
Confidence 3
No 165
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.55 E-value=7.7e-07 Score=103.67 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=47.8
Q ss_pred Hhcccc--eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Q 002758 768 FFNQRV--KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVR 841 (884)
Q Consensus 768 fl~rID--~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~~ 841 (884)
+..|+. .++.|.|++.+.+.+|+.+.+... .+.++++++++|+...-. ..|.|+..|..+...
T Consensus 265 l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~---------~~~l~~e~l~~ia~~~~~--~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 265 LRSRFEWGLTVDIEPPDLETRIAILKKKAEEE---------GIDLPDEVLEFIAKNITS--NVRELEGALNRLIAY 329 (450)
T ss_pred HHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHcCcCC--CHHHHHHHHHHHHHH
Confidence 344443 479999999999999999887652 467999999999997432 567788777777544
No 166
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.52 E-value=1.8e-06 Score=107.60 Aligned_cols=116 Identities=18% Similarity=0.166 Sum_probs=75.9
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCC-------CcceEEeccCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 550 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs-------~~~fi~id~s~ 550 (884)
..|+|.++.++.+...+.+... . .++|+||+|||||.+|+.||..+... ...++.+|++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~---------~----n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~ 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK---------N----NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc---------C----CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH
Confidence 4689999999888887654211 1 58999999999999999999987532 35677777762
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccC--------HHHHHHHHHHHhCCeee
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD--------VHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~--------~~vq~~Llq~le~G~l~ 620 (884)
.-. ...|.|.-+. .+..+.+.+......|+|||||+.+- ..+.+.|+.++..|.+.
T Consensus 246 l~a---------g~~~~ge~e~-----rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~ 309 (821)
T CHL00095 246 LLA---------GTKYRGEFEE-----RLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQ 309 (821)
T ss_pred Hhc---------cCCCccHHHH-----HHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcE
Confidence 110 0112221111 12344444455556899999998542 24678888888877543
No 167
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=6.2e-07 Score=99.55 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=77.5
Q ss_pred cCccchHHHHHHHHHHHHH------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCC
Q 002758 479 KIDWQDEAISVISQTIAQR------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQD 552 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~ 552 (884)
.|.|-.+|++.|.+||... ..|+.+|=+ -+|+.||||+|||.||+|+|-.. +.-| |+.+..
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWk-------gvLm~GPPGTGKTlLAKAvATEc---~tTF--FNVSss- 279 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWK-------GVLMVGPPGTGKTLLAKAVATEC---GTTF--FNVSSS- 279 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccc-------eeeeeCCCCCcHHHHHHHHHHhh---cCeE--EEechh-
Confidence 3778888999999998663 456655422 39999999999999999999875 2333 343311
Q ss_pred CCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccc------------cCHHHHHHHHHHHhC
Q 002758 553 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDK------------ADVHVQNSLSKAIQT 616 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEK------------a~~~vq~~Llq~le~ 616 (884)
.| -..|-|..+. .+..|.+..+..-.++|||||||- +...+-..||.-|+.
T Consensus 280 -------tl-tSKwRGeSEK-----lvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG 342 (491)
T KOG0738|consen 280 -------TL-TSKWRGESEK-----LVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDG 342 (491)
T ss_pred -------hh-hhhhccchHH-----HHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhc
Confidence 01 0133343333 456777777777779999999984 445688888888874
No 168
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=6.6e-07 Score=100.20 Aligned_cols=134 Identities=22% Similarity=0.232 Sum_probs=81.6
Q ss_pred ccCcc-chHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc--ceEEeccC---CC
Q 002758 478 EKIDW-QDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE--NFICADLC---PQ 551 (884)
Q Consensus 478 ~~ViG-Q~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~--~fi~id~s---~~ 551 (884)
+.|+| |+.+++.+...+...+. +-.+||+||+|+||+++|+++|+.++.... ..-+-.|. ..
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~l------------~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~ 72 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNRL------------SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC------------CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHH
Confidence 45677 88899988888764332 226899999999999999999999975431 00000011 00
Q ss_pred CCCCCCCCCccccccccccccccccchHHHHHHHHHh----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 552 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 552 ~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
.. ..+++-.+ +..+..-.+...+..+.+.+.. ..+.||+|||+|+++...+|.|++.||+..
T Consensus 73 ~~-~~hpD~~~----i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp--------- 138 (329)
T PRK08058 73 DS-GNHPDVHL----VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS--------- 138 (329)
T ss_pred hc-CCCCCEEE----eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC---------
Confidence 00 11111110 0000000111122334444443 346799999999999999999999999731
Q ss_pred ecCceEEEEecC
Q 002758 628 SVSNAIFVTASS 639 (884)
Q Consensus 628 ~~~naI~IlTSN 639 (884)
.+++||++|+
T Consensus 139 --~~~~~Il~t~ 148 (329)
T PRK08058 139 --GGTTAILLTE 148 (329)
T ss_pred --CCceEEEEeC
Confidence 3677888876
No 169
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.3e-07 Score=108.56 Aligned_cols=99 Identities=19% Similarity=0.141 Sum_probs=69.9
Q ss_pred cCccchHHHHHHHHHHHH-------HhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCC
Q 002758 479 KIDWQDEAISVISQTIAQ-------RRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ 551 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~-------~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~ 551 (884)
.|.|-+++...|.++|.. .-+|+++|. =+||+||||||||.||+|+|-.. .-.|+.+...+.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRS--------GILLYGPPGTGKTLlAKAVATEc---sL~FlSVKGPEL 741 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRS--------GILLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPEL 741 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccc--------eeEEECCCCCchHHHHHHHHhhc---eeeEEeecCHHH
Confidence 467778899999998865 234444432 39999999999999999999876 456666654421
Q ss_pred CCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCH
Q 002758 552 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV 604 (884)
Q Consensus 552 ~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~ 604 (884)
- .-|+|..|. =++.+.+..+....+||||||+|-+.|
T Consensus 742 L-----------NMYVGqSE~-----NVR~VFerAR~A~PCVIFFDELDSlAP 778 (953)
T KOG0736|consen 742 L-----------NMYVGQSEE-----NVREVFERARSAAPCVIFFDELDSLAP 778 (953)
T ss_pred H-----------HHHhcchHH-----HHHHHHHHhhccCCeEEEeccccccCc
Confidence 1 134555443 134566666777779999999998765
No 170
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.49 E-value=1.4e-06 Score=112.03 Aligned_cols=118 Identities=10% Similarity=0.003 Sum_probs=68.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCC-----C------CCCc-----c----ccccccc---c
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN-----N------PPKF-----Y----HQVVGGD---S 570 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~-----~------~s~L-----~----p~gy~G~---~ 570 (884)
-+||+||+|||||.||+|||... +-+|+.+.++..-.... + ...+ + ..++... -
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~ 1708 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNAL 1708 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchh
Confidence 49999999999999999999976 67999998884211000 0 0000 0 0000000 0
Q ss_pred c--ccccc--chHHHHHHHHHhCCCeEEEEccccccCHH-----HHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 571 V--QFRGK--TLADYVAWELLKKPLSVVYLENVDKADVH-----VQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 571 ~--g~rgk--~~l~~L~eal~~~p~~VIlLDEIEKa~~~-----vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
. .+.+. ..+..+.+..++...+||+|||||.+... ..+.|+..|+...-. .+..++|||++||.
T Consensus 1709 ~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~------~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1709 TMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER------CSTRNILVIASTHI 1781 (2281)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc------CCCCCEEEEEeCCC
Confidence 0 00010 01233445556667799999999988753 356666766642111 12247889999985
No 171
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.48 E-value=1.5e-06 Score=101.15 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=44.2
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 002758 774 KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVL 839 (884)
Q Consensus 774 ~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl 839 (884)
.++.+.|++.+++..|+.+..... .+.++++++++|+...- ...|.|+.-|+.+.
T Consensus 264 l~~~l~~pd~e~r~~iL~~k~~~~---------~~~l~~evl~~la~~~~--~dir~L~g~l~~l~ 318 (445)
T PRK12422 264 IAIPLHPLTKEGLRSFLERKAEAL---------SIRIEETALDFLIEALS--SNVKSLLHALTLLA 318 (445)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHhcC--CCHHHHHHHHHHHH
Confidence 578999999999999998877552 36799999999999643 25688888888774
No 172
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=5.9e-07 Score=102.72 Aligned_cols=135 Identities=17% Similarity=0.192 Sum_probs=83.5
Q ss_pred HhhccCccchHHHHHHHHHHHHHhc--CCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCC
Q 002758 475 ALTEKIDWQDEAISVISQTIAQRRT--GHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQD 552 (884)
Q Consensus 475 ~L~~~ViGQ~eAi~~Ia~aI~~~rs--g~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~ 552 (884)
.-.+.|-|-|+|..++-+.|.-.+. .+.+-.+.++| =+||.||||+|||.||||+|-.- +-+|.+...++++
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPK---GVLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPK---GVLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEFD 374 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCC---ceEEeCCCCCchhHHHHHhhccc---CCCeEeccccchh
Confidence 3356789999998777776654321 01111122222 39999999999999999999654 6678777666543
Q ss_pred CCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHHhCCeeeC
Q 002758 553 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~-----------~~vq~~Llq~le~G~l~d 621 (884)
. -|+|.. ..-+..|..+.+.+-.+||||||||... .+..|.||--|+. |.-
T Consensus 375 E-----------m~VGvG-----ArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDG--F~q 436 (752)
T KOG0734|consen 375 E-----------MFVGVG-----ARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDG--FKQ 436 (752)
T ss_pred h-----------hhhccc-----HHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcC--cCc
Confidence 2 233321 1123556666666667999999999542 1234444444442 222
Q ss_pred CCCeEeecCceEEEEecCC
Q 002758 622 SYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 622 s~Gr~V~~~naI~IlTSN~ 640 (884)
+. .+|||.+||.
T Consensus 437 Ne-------GiIvigATNf 448 (752)
T KOG0734|consen 437 NE-------GIIVIGATNF 448 (752)
T ss_pred CC-------ceEEEeccCC
Confidence 22 4788888885
No 173
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.48 E-value=8.1e-07 Score=102.13 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=84.7
Q ss_pred hhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCC
Q 002758 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 555 (884)
Q Consensus 476 L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~ 555 (884)
+. .+++-++.++.+..++... . .++|+||+|+|||++|++||..+.+.. .+.++++.....+
T Consensus 174 l~-d~~i~e~~le~l~~~L~~~-----------~----~iil~GppGtGKT~lA~~la~~l~~~~-~~~~v~~VtFHps- 235 (459)
T PRK11331 174 LN-DLFIPETTIETILKRLTIK-----------K----NIILQGPPGVGKTFVARRLAYLLTGEK-APQRVNMVQFHQS- 235 (459)
T ss_pred hh-cccCCHHHHHHHHHHHhcC-----------C----CEEEECCCCCCHHHHHHHHHHHhcCCc-ccceeeEEeeccc-
Confidence 44 4677777777776665521 1 599999999999999999999987642 3334444321110
Q ss_pred CCCCCcc---ccccccccccccccchHHHHHHHHHhCC--CeEEEEccccccCHH-HHHHHHHHHhCCe------ee---
Q 002758 556 NNPPKFY---HQVVGGDSVQFRGKTLADYVAWELLKKP--LSVVYLENVDKADVH-VQNSLSKAIQTGK------LP--- 620 (884)
Q Consensus 556 ~~~s~L~---p~gy~G~~~g~rgk~~l~~L~eal~~~p--~~VIlLDEIEKa~~~-vq~~Llq~le~G~------l~--- 620 (884)
..-..++ .|+++|+... ...+...+..| ..+| ..|||||||++++.. +...|+++||.+. +.
T Consensus 236 ySYeDFI~G~rP~~vgy~~~--~G~f~~~~~~A-~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y 312 (459)
T PRK11331 236 YSYEDFIQGYRPNGVGFRRK--DGIFYNFCQQA-KEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTY 312 (459)
T ss_pred ccHHHHhcccCCCCCCeEec--CchHHHHHHHH-HhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeec
Confidence 1111121 2333333211 01122333333 3333 579999999999965 6899999999642 11
Q ss_pred -CCCCeEee-cCceEEEEecCC
Q 002758 621 -DSYGREVS-VSNAIFVTASSF 640 (884)
Q Consensus 621 -ds~Gr~V~-~~naI~IlTSN~ 640 (884)
...+..+. -.|.+||.|.|.
T Consensus 313 ~e~d~e~f~iP~Nl~IIgTMNt 334 (459)
T PRK11331 313 SENDEERFYVPENVYIIGLMNT 334 (459)
T ss_pred cccccccccCCCCeEEEEecCc
Confidence 11111222 257889999996
No 174
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.3e-06 Score=97.52 Aligned_cols=132 Identities=15% Similarity=0.166 Sum_probs=85.9
Q ss_pred CccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCC------CC
Q 002758 480 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ------DG 553 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~------~~ 553 (884)
.+||..+...+..++.+.+. + -.+||.||+|+||+.+|+++|+.+......-. -.|... ..
T Consensus 4 yPW~~~~~~~l~~~~~~~rl-------~-----HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-~~Cg~C~sC~~~~~ 70 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLG-------H-----HALLFKADSGLGTEQLIRALAQWLMCQTPQGD-QPCGQCHSCHLFQA 70 (325)
T ss_pred CcchHHHHHHHHHHHHcCCc-------c-----eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHhc
Confidence 58999999998888876443 1 26999999999999999999999975431100 012111 10
Q ss_pred CCCCCCCc-cccccccccccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 554 EMNNPPKF-YHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 554 e~~~~s~L-~p~gy~G~~~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
..+++-. +.|. +...++...+..+.+.+... ++.|++||++|+|....+|+|++.||+-.
T Consensus 71 -g~HPD~~~i~p~----~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp---------- 135 (325)
T PRK06871 71 -GNHPDFHILEPI----DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR---------- 135 (325)
T ss_pred -CCCCCEEEEccc----cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC----------
Confidence 1222211 1110 00112233344555555544 45899999999999999999999999842
Q ss_pred cCceEEEEecCC
Q 002758 629 VSNAIFVTASSF 640 (884)
Q Consensus 629 ~~naI~IlTSN~ 640 (884)
.+++||++|+-
T Consensus 136 -~~~~fiL~t~~ 146 (325)
T PRK06871 136 -PNTYFLLQADL 146 (325)
T ss_pred -CCeEEEEEECC
Confidence 36788888864
No 175
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.46 E-value=2.9e-06 Score=106.19 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=71.7
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcC-------CCcceEEeccCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG-------GKENFICADLCP 550 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~g-------s~~~fi~id~s~ 550 (884)
+.|+||++.+..+...+.+... . .++|+||+|||||.+|++||..+.. ....++.+|++.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~---------~----n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK---------N----NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC---------C----ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH
Confidence 4599999887777766543211 1 5889999999999999999998753 235566676653
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHh-CCCeEEEEccccccC--------HHHHHHHHHHHhCCee
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKAD--------VHVQNSLSKAIQTGKL 619 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~-~p~~VIlLDEIEKa~--------~~vq~~Llq~le~G~l 619 (884)
... ...|.|..+. .+..+...+.+ ....|||||||+.+. .++++.|+.+++.|.+
T Consensus 240 l~a---------~~~~~g~~e~-----~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i 303 (852)
T TIGR03346 240 LIA---------GAKYRGEFEE-----RLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGEL 303 (852)
T ss_pred Hhh---------cchhhhhHHH-----HHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCce
Confidence 110 0112221111 12233333333 346899999999764 2467778777776544
No 176
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.45 E-value=3.2e-06 Score=98.47 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=46.9
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Q 002758 774 KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGF 843 (884)
Q Consensus 774 ~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~~~L 843 (884)
-++.++|++.+++.+|+.+.+... ++.+.++++++++|+...-- -.|.++..+.+++.-++
T Consensus 268 l~~~L~~pd~e~r~~iL~~~~~~~-------gl~~~l~~evl~~Ia~~~~g--d~R~L~gaL~~l~~~a~ 328 (450)
T PRK14087 268 LSIAIQKLDNKTATAIIKKEIKNQ-------NIKQEVTEEAINFISNYYSD--DVRKIKGSVSRLNFWSQ 328 (450)
T ss_pred ceeccCCcCHHHHHHHHHHHHHhc-------CCCCCCCHHHHHHHHHccCC--CHHHHHHHHHHHHHHHh
Confidence 478899999999999999988652 33347999999999997432 56888888887764433
No 177
>PRK04132 replication factor C small subunit; Provisional
Probab=98.44 E-value=3.2e-06 Score=104.14 Aligned_cols=94 Identities=19% Similarity=0.328 Sum_probs=68.6
Q ss_pred EEEEEc--CCCCchHHHHHHHHHHHcCC--CcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHH-HHHHh
Q 002758 514 WFNFTG--PDLCGKRKIAIALAEIIYGG--KENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVA-WELLK 588 (884)
Q Consensus 514 ~lLf~G--p~GvGKT~LA~aLAe~L~gs--~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~-eal~~ 588 (884)
.-+..| |.+.|||++|++||+.+||. ...++.+|.+... |...+..+. +....
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r----------------------gid~IR~iIk~~a~~ 623 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER----------------------GINVIREKVKEFART 623 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc----------------------cHHHHHHHHHHHHhc
Confidence 456678 99999999999999999985 4578888877321 111122322 22222
Q ss_pred C-----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 589 K-----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 589 ~-----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
. ++.||+|||+|+++...|+.|++.||+.. .+++||++||-
T Consensus 624 ~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~-----------~~~~FILi~N~ 669 (846)
T PRK04132 624 KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-----------SNVRFILSCNY 669 (846)
T ss_pred CCcCCCCCEEEEEECcccCCHHHHHHHHHHhhCCC-----------CCeEEEEEeCC
Confidence 2 35799999999999999999999999721 25779999884
No 178
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=8.4e-07 Score=98.74 Aligned_cols=139 Identities=19% Similarity=0.164 Sum_probs=86.6
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcc-eEEeccC-CCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKEN-FICADLC-PQDGEM 555 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~-fi~id~s-~~~~e~ 555 (884)
.-.+||..+...+..++...+. +-.+||+||.|+||+.+|.++|+.++..... .-...+. .... .
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl------------~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~-g 70 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRL------------GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAA-G 70 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCc------------ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhc-C
Confidence 3468999999998888775433 2259999999999999999999999864321 0000000 0000 1
Q ss_pred CCCCCc-c--ccccccccc-cccccchHHHHHHHHHhCC----CeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEe
Q 002758 556 NNPPKF-Y--HQVVGGDSV-QFRGKTLADYVAWELLKKP----LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREV 627 (884)
Q Consensus 556 ~~~s~L-~--p~gy~G~~~-g~rgk~~l~~L~eal~~~p----~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V 627 (884)
.+++-. + .|+..|... .-++...+..+.+.+...| +.||+||++|+|+...+|.|++.||+--
T Consensus 71 ~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp--------- 141 (319)
T PRK08769 71 THPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS--------- 141 (319)
T ss_pred CCCCEEEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC---------
Confidence 122211 1 122111100 0011223344555555444 5799999999999999999999999742
Q ss_pred ecCceEEEEecCC
Q 002758 628 SVSNAIFVTASSF 640 (884)
Q Consensus 628 ~~~naI~IlTSN~ 640 (884)
.+++||++|+-
T Consensus 142 --~~~~fiL~~~~ 152 (319)
T PRK08769 142 --PGRYLWLISAQ 152 (319)
T ss_pred --CCCeEEEEECC
Confidence 36778888874
No 179
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.42 E-value=5.7e-07 Score=93.99 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=81.0
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCC--CcceEEeccCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG--KENFICADLCPQDGEM 555 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs--~~~fi~id~s~~~~e~ 555 (884)
..|+|.+++++.+.-... .|. .+ +++|.||||+|||+-+.+||+.|.|. .+.++.++.+..
T Consensus 27 ~dIVGNe~tv~rl~via~---~gn------mP----~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde---- 89 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK---EGN------MP----NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE---- 89 (333)
T ss_pred HHhhCCHHHHHHHHHHHH---cCC------CC----ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc----
Confidence 458999988887664332 222 12 69999999999999999999999985 344555554411
Q ss_pred CCCCCccccccccccccccccchHH----HHHH-HHH--hCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 556 NNPPKFYHQVVGGDSVQFRGKTLAD----YVAW-ELL--KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 556 ~~~s~L~p~gy~G~~~g~rgk~~l~----~L~e-al~--~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
||...+. .++. .+. ...+.||+|||.|.|....|++|.+.||--
T Consensus 90 ------------------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiy----------- 140 (333)
T KOG0991|consen 90 ------------------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIY----------- 140 (333)
T ss_pred ------------------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHH-----------
Confidence 2221111 1111 111 245789999999999999999999999931
Q ss_pred cCceEEEEecCCC
Q 002758 629 VSNAIFVTASSFV 641 (884)
Q Consensus 629 ~~naI~IlTSN~g 641 (884)
-+-+.|.++||..
T Consensus 141 S~ttRFalaCN~s 153 (333)
T KOG0991|consen 141 SNTTRFALACNQS 153 (333)
T ss_pred cccchhhhhhcch
Confidence 1245699999963
No 180
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=2e-06 Score=96.43 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=86.9
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCC------C
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ------D 552 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~------~ 552 (884)
-.+||..+-+.+..++...+. +-.+||.||.|+||+.+|.++|+.++.....- .-.|... .
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl------------~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~-~~~Cg~C~sC~~~~ 69 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRG------------HHALLIQALPGMGDDALIYALSRWLMCQQPQG-HKSCGHCRGCQLMQ 69 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCc------------ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHH
Confidence 458999999998888776443 22699999999999999999999997542110 0012211 1
Q ss_pred CCCCCCCCcc--ccccccccccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeE
Q 002758 553 GEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGRE 626 (884)
Q Consensus 553 ~e~~~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~ 626 (884)
. ..+++-.+ |.+. ...++...+..+.+.+... .+.|++||++|+|....+|.|++.||+--
T Consensus 70 ~-g~HPD~~~i~p~~~----~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------- 136 (334)
T PRK07993 70 A-GTHPDYYTLTPEKG----KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP-------- 136 (334)
T ss_pred c-CCCCCEEEEecccc----cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCC--------
Confidence 0 12222111 1110 0112222345555555544 46799999999999999999999999842
Q ss_pred eecCceEEEEecCC
Q 002758 627 VSVSNAIFVTASSF 640 (884)
Q Consensus 627 V~~~naI~IlTSN~ 640 (884)
.+++||++|+-
T Consensus 137 ---~~t~fiL~t~~ 147 (334)
T PRK07993 137 ---ENTWFFLACRE 147 (334)
T ss_pred ---CCeEEEEEECC
Confidence 36788888864
No 181
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.41 E-value=4.1e-06 Score=99.76 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=43.4
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q 002758 774 KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLV 840 (884)
Q Consensus 774 ~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~ 840 (884)
.++...++|.+....|+.+..... .+.+++++++||+...-. ..|.|+..|.++..
T Consensus 439 Lvv~I~~PD~EtR~aIL~kka~~r---------~l~l~~eVi~yLa~r~~r--nvR~LegaL~rL~a 494 (617)
T PRK14086 439 LITDVQPPELETRIAILRKKAVQE---------QLNAPPEVLEFIASRISR--NIRELEGALIRVTA 494 (617)
T ss_pred ceEEcCCCCHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHHhccC--CHHHHHHHHHHHHH
Confidence 367888999999999998776442 478999999999997432 46788888887754
No 182
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.3e-06 Score=99.95 Aligned_cols=139 Identities=16% Similarity=0.185 Sum_probs=83.2
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcC-CCcceE------EeccCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG-GKENFI------CADLCP 550 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~g-s~~~fi------~id~s~ 550 (884)
+.|+||+.|.+++--+ .+|.. .+||+||+|+|||.+|+.|..+|=. +...++ .++-..
T Consensus 179 ~DV~GQ~~AKrAleiA----AAGgH-----------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~ 243 (490)
T COG0606 179 KDVKGQEQAKRALEIA----AAGGH-----------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDL 243 (490)
T ss_pred hhhcCcHHHHHHHHHH----HhcCC-----------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccc
Confidence 3589999998775443 34321 5999999999999999987765521 000000 011000
Q ss_pred CCC----------CCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeee
Q 002758 551 QDG----------EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 551 ~~~----------e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ 620 (884)
... ..|+..+. ..++|... ....+.+....++|+||||+-.....+++.|.+-||+|+++
T Consensus 244 ~~~~~~~~~rPFr~PHHsaS~--~aLvGGG~--------~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~ 313 (490)
T COG0606 244 HEGCPLKIHRPFRAPHHSASL--AALVGGGG--------VPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKII 313 (490)
T ss_pred cccCccceeCCccCCCccchH--HHHhCCCC--------CCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEE
Confidence 000 01111110 11111110 01123444455789999999999999999999999999987
Q ss_pred CCC-CeEeec-CceEEEEecCCC
Q 002758 621 DSY-GREVSV-SNAIFVTASSFV 641 (884)
Q Consensus 621 ds~-Gr~V~~-~naI~IlTSN~g 641 (884)
.+. +..|.| .+-++|+++|..
T Consensus 314 IsRa~~~v~ypa~Fqlv~AmNpc 336 (490)
T COG0606 314 ISRAGSKVTYPARFQLVAAMNPC 336 (490)
T ss_pred EEEcCCeeEEeeeeEEhhhcCCC
Confidence 754 334444 466788888874
No 183
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.40 E-value=3.7e-06 Score=97.81 Aligned_cols=56 Identities=13% Similarity=0.066 Sum_probs=43.7
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHH
Q 002758 774 KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLV 840 (884)
Q Consensus 774 ~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~ 840 (884)
.++.+.|+|.+....|+.+..... .+.++++++++|+...-. ..|.|+..|.++..
T Consensus 256 l~v~i~~pd~e~r~~IL~~~~~~~---------~~~l~~ev~~~Ia~~~~~--~~R~L~g~l~~l~~ 311 (440)
T PRK14088 256 LVAKLEPPDEETRKKIARKMLEIE---------HGELPEEVLNFVAENVDD--NLRRLRGAIIKLLV 311 (440)
T ss_pred ceEeeCCCCHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHhcccc--CHHHHHHHHHHHHH
Confidence 478999999999999998776531 366899999999997432 46888888887754
No 184
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=2.5e-06 Score=95.00 Aligned_cols=134 Identities=10% Similarity=0.044 Sum_probs=86.7
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCC------
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ------ 551 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~------ 551 (884)
.-.+||.++...+..++.+.+. +-.+||.||.|+||+.+|+++|+.+......- -.|...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl------------~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~sC~~~ 68 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRI------------PGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELM 68 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCc------------ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHHHHHH
Confidence 3468999999998888765443 22699999999999999999999997543211 112211
Q ss_pred CCCCCCCCCc-cccccccccccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeE
Q 002758 552 DGEMNNPPKF-YHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGRE 626 (884)
Q Consensus 552 ~~e~~~~s~L-~p~gy~G~~~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~ 626 (884)
.. ..+++-. +.|+..| ..++...+..+.+.+... .+.|++||++|+|....+|+|++.||+--
T Consensus 69 ~~-g~HPD~~~i~p~~~~---~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------- 136 (319)
T PRK06090 69 QS-GNHPDLHVIKPEKEG---KSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPA-------- 136 (319)
T ss_pred Hc-CCCCCEEEEecCcCC---CcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCC--------
Confidence 10 1222211 1111001 112222334455555443 36899999999999999999999999842
Q ss_pred eecCceEEEEecCC
Q 002758 627 VSVSNAIFVTASSF 640 (884)
Q Consensus 627 V~~~naI~IlTSN~ 640 (884)
.+++||++|+-
T Consensus 137 ---~~t~fiL~t~~ 147 (319)
T PRK06090 137 ---PNCLFLLVTHN 147 (319)
T ss_pred ---CCeEEEEEECC
Confidence 36788888764
No 185
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4.2e-06 Score=94.98 Aligned_cols=145 Identities=14% Similarity=0.076 Sum_probs=88.7
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCC-cc-eEEeccCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK-EN-FICADLCPQDGEM 555 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~-~~-fi~id~s~~~~e~ 555 (884)
+++++.++-+..++..+.....|.. +..++++|++|||||.+++.+.+.+.... .. +++|||-.+...+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~---------p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGER---------PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCC---------CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 4578888888888888877655432 23699999999999999999999997652 22 6899998654311
Q ss_pred CCCCCccccccc-cccccccccchHHHHHHHHHh-CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceE
Q 002758 556 NNPPKFYHQVVG-GDSVQFRGKTLADYVAWELLK-KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAI 633 (884)
Q Consensus 556 ~~~s~L~p~gy~-G~~~g~rgk~~l~~L~eal~~-~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI 633 (884)
.-...++ ..+. .-..|.....+...+.+.+.. ...-||+|||||.+-..-++.|+.++.-..-. ..+++
T Consensus 88 ~i~~~i~-~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--------~~~v~ 158 (366)
T COG1474 88 QVLSKIL-NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--------KVKVS 158 (366)
T ss_pred HHHHHHH-HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--------ceeEE
Confidence 1111111 0000 000111112234566666655 44578999999988766445555555533211 23466
Q ss_pred EEEecCC
Q 002758 634 FVTASSF 640 (884)
Q Consensus 634 ~IlTSN~ 640 (884)
+|+.+|.
T Consensus 159 vi~i~n~ 165 (366)
T COG1474 159 IIAVSND 165 (366)
T ss_pred EEEEecc
Confidence 7777773
No 186
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=3e-06 Score=94.89 Aligned_cols=130 Identities=16% Similarity=0.197 Sum_probs=79.1
Q ss_pred CccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC------CCC
Q 002758 480 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP------QDG 553 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~------~~~ 553 (884)
.+||......+... | +-+-.+||+||+|+||+++|+++|+.++..... ---.|.. ...
T Consensus 5 yPWl~~~~~~~~~~------~---------r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~-~~~~Cg~C~sC~~~~~ 68 (328)
T PRK05707 5 YPWQQSLWQQLAGR------G---------RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQ-GGGACGSCKGCQLLRA 68 (328)
T ss_pred CCCcHHHHHHHHHC------C---------CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHhc
Confidence 58998877775432 1 112269999999999999999999999754211 0001111 000
Q ss_pred CCCCCCCc-cccccccccccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEee
Q 002758 554 EMNNPPKF-YHQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVS 628 (884)
Q Consensus 554 e~~~~s~L-~p~gy~G~~~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~ 628 (884)
..+++-. +.|+..+ ..++...+..+.+.+... .+.|++||++|+|+...+|.|++.||+--
T Consensus 69 -g~HPD~~~i~~~~~~---~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp---------- 134 (328)
T PRK05707 69 -GSHPDNFVLEPEEAD---KTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS---------- 134 (328)
T ss_pred -CCCCCEEEEeccCCC---CCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCC----------
Confidence 1111111 1111000 112222334555555543 46899999999999999999999999732
Q ss_pred cCceEEEEecCC
Q 002758 629 VSNAIFVTASSF 640 (884)
Q Consensus 629 ~~naI~IlTSN~ 640 (884)
.+++||++|+-
T Consensus 135 -~~~~fiL~t~~ 145 (328)
T PRK05707 135 -GDTVLLLISHQ 145 (328)
T ss_pred -CCeEEEEEECC
Confidence 36778888875
No 187
>PRK09087 hypothetical protein; Validated
Probab=98.38 E-value=6.1e-06 Score=87.70 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=48.0
Q ss_pred Hhcccc--eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Q 002758 768 FFNQRV--KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRG 842 (884)
Q Consensus 768 fl~rID--~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~~~ 842 (884)
+..|+. .++.++|++.+++.+++.+.+.+. .+.++++++++|+...-- ..|.++..|.++-.-+
T Consensus 138 L~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~---------~~~l~~ev~~~La~~~~r--~~~~l~~~l~~L~~~~ 203 (226)
T PRK09087 138 LKSRLKAATVVEIGEPDDALLSQVIFKLFADR---------QLYVDPHVVYYLVSRMER--SLFAAQTIVDRLDRLA 203 (226)
T ss_pred HHHHHhCCceeecCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHhhh--hHHHHHHHHHHHHHHH
Confidence 444443 589999999999999999988662 468999999999998542 4567777776665433
No 188
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.35 E-value=2.8e-05 Score=82.97 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=86.1
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNP 558 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~ 558 (884)
.++|-+.....|.....+...|.. .-++|++|+.|||||.++++|.......+-.+|.++-...
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~p---------annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L------- 91 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGLP---------ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL------- 91 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCCC---------CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh-------
Confidence 458888888888888888877531 2279999999999999999999888766656665542210
Q ss_pred CCccccccccccccccccchHHHHHHHHHhCCC-eEEEEccccc-cCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEE
Q 002758 559 PKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL-SVVYLENVDK-ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVT 636 (884)
Q Consensus 559 s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~-~VIlLDEIEK-a~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~Il 636 (884)
..+..|.+.++..|+ -|||+|+.-- +...-...|+.+||.|--.. -.|++|.+
T Consensus 92 ------------------~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-------P~NvliyA 146 (249)
T PF05673_consen 92 ------------------GDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-------PDNVLIYA 146 (249)
T ss_pred ------------------ccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-------CCcEEEEE
Confidence 023567788887665 4899999763 33445577777777653222 25899999
Q ss_pred ecCC
Q 002758 637 ASSF 640 (884)
Q Consensus 637 TSN~ 640 (884)
|||.
T Consensus 147 TSNR 150 (249)
T PF05673_consen 147 TSNR 150 (249)
T ss_pred ecch
Confidence 9995
No 189
>PRK06620 hypothetical protein; Validated
Probab=98.34 E-value=9.1e-06 Score=85.69 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=43.9
Q ss_pred eeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 002758 775 IVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVL 839 (884)
Q Consensus 775 IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl 839 (884)
++.++|++.+++..++.+...+. .+.+++++++||+...- ...|.++..|+.+-
T Consensus 141 ~~~l~~pd~~~~~~~l~k~~~~~---------~l~l~~ev~~~L~~~~~--~d~r~l~~~l~~l~ 194 (214)
T PRK06620 141 SILLNSPDDELIKILIFKHFSIS---------SVTISRQIIDFLLVNLP--REYSKIIEILENIN 194 (214)
T ss_pred eEeeCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcc--CCHHHHHHHHHHHH
Confidence 78999999999888888876541 36799999999999753 36789999999854
No 190
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.34 E-value=1.9e-06 Score=106.33 Aligned_cols=125 Identities=20% Similarity=0.149 Sum_probs=79.8
Q ss_pred CccchHHHHHHHHHHHHH--------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCC
Q 002758 480 IDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ 551 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~--------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~ 551 (884)
|.|.++++..|.+.+... ..|+.. +..+||+||+|+|||++|++||..+ ..+|+.+++...
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~--------~~giLL~GppGtGKT~laraia~~~---~~~~i~i~~~~i 248 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEP--------PKGVLLYGPPGTGKTLLAKAVANEA---GAYFISINGPEI 248 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCC--------CceEEEECCCCCChHHHHHHHHHHh---CCeEEEEecHHH
Confidence 678888888887777542 122211 2259999999999999999999987 456888876532
Q ss_pred CCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHHhCCeee
Q 002758 552 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 552 ~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~-----------~~vq~~Llq~le~G~l~ 620 (884)
.. .|.|..+. .+..+.+.......+||||||||.+. ..+++.|+..|+.-.
T Consensus 249 ~~-----------~~~g~~~~-----~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-- 310 (733)
T TIGR01243 249 MS-----------KYYGESEE-----RLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-- 310 (733)
T ss_pred hc-----------ccccHHHH-----HHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc--
Confidence 11 22222111 12334444444455899999998753 357778888886421
Q ss_pred CCCCeEeecCceEEEEecCC
Q 002758 621 DSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 621 ds~Gr~V~~~naI~IlTSN~ 640 (884)
. . .++++|.+||.
T Consensus 311 ~-~------~~vivI~atn~ 323 (733)
T TIGR01243 311 G-R------GRVIVIGATNR 323 (733)
T ss_pred c-C------CCEEEEeecCC
Confidence 1 1 24677778875
No 191
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.31 E-value=1.6e-05 Score=85.72 Aligned_cols=51 Identities=10% Similarity=0.182 Sum_probs=42.9
Q ss_pred cChhHHhcccceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhcc
Q 002758 763 SWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAY 823 (884)
Q Consensus 763 ~f~~efl~rID~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~ 823 (884)
..++|+++|+ .||.-.+++.+++++|+....... .|++++++++.|+.-+.
T Consensus 350 Gip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~~E---------~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 350 GIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQVE---------GLQVEEEALDLLAEIGT 400 (456)
T ss_pred CCCHHHhhhe-eEEeeccCCHHHHHHHHHHHHhhh---------cceecHHHHHHHHhhcc
Confidence 6788999998 588999999999999998765432 58899999999998654
No 192
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.7e-06 Score=92.98 Aligned_cols=129 Identities=18% Similarity=0.179 Sum_probs=86.2
Q ss_pred cCccchHHHHHHHHHHHHH--------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 479 KIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~--------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
.|-|-+..|.+|.+++... ..|+..|+ -++++|++|+|||.||+|+|..- ..-|+++-.++
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPK--------GVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGse 254 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPK--------GVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSE 254 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCC--------eeEEeCCCCCchhHHHHHHhccc---chhhhhhhhHH
Confidence 3566666777777777542 23444332 39999999999999999999854 45566665542
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHHhCCee
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKAD-----------VHVQNSLSKAIQTGKL 619 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~-----------~~vq~~Llq~le~G~l 619 (884)
|+ +.|.|.... .+.++......+..+|+||||||... .++|..++.++..=.=
T Consensus 255 ----------Li-QkylGdGpk-----lvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldG 318 (440)
T KOG0726|consen 255 ----------LI-QKYLGDGPK-----LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 318 (440)
T ss_pred ----------HH-HHHhccchH-----HHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccC
Confidence 11 345554333 34566666666677999999999643 5799999988864222
Q ss_pred eCCCCeEeecCceEEEEecCC
Q 002758 620 PDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 620 ~ds~Gr~V~~~naI~IlTSN~ 640 (884)
.|+.| ++-+||+||.
T Consensus 319 Fdsrg------DvKvimATnr 333 (440)
T KOG0726|consen 319 FDSRG------DVKVIMATNR 333 (440)
T ss_pred ccccC------CeEEEEeccc
Confidence 23333 5569999995
No 193
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.7e-06 Score=101.35 Aligned_cols=129 Identities=17% Similarity=0.133 Sum_probs=84.3
Q ss_pred hccCccchHHHHHHHHHHHHHh-------cCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 477 TEKIDWQDEAISVISQTIAQRR-------TGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 477 ~~~ViGQ~eAi~~Ia~aI~~~r-------sg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
.+.|-|.++|..+|-+.|.-.+ .|.+- |.+ +||+||||||||.||+|+|-.- +-||+.+..+
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKi---PkG-----vLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGS 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKI---PKG-----VLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGS 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcC---cCc-----eEEECCCCCcHHHHHHHHhccc---CCceeeechH
Confidence 3568999999999888776532 22222 233 9999999999999999999754 7899988877
Q ss_pred CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCH---------------HHHHHHHHHH
Q 002758 550 PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV---------------HVQNSLSKAI 614 (884)
Q Consensus 550 ~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~---------------~vq~~Llq~l 614 (884)
++-. .++|- |..-+..|....+.+-.+|||+||||.... ..+|.|+--|
T Consensus 379 EFvE-----------~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~em 442 (774)
T KOG0731|consen 379 EFVE-----------MFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEM 442 (774)
T ss_pred HHHH-----------Hhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHh
Confidence 4321 12221 111234555666667779999999995321 2334444444
Q ss_pred hCCeeeCCCCeEeecCceEEEEecCCC
Q 002758 615 QTGKLPDSYGREVSVSNAIFVTASSFV 641 (884)
Q Consensus 615 e~G~l~ds~Gr~V~~~naI~IlTSN~g 641 (884)
+. -. .. .++||+.+||..
T Consensus 443 Dg-f~-------~~-~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 443 DG-FE-------TS-KGVIVLAATNRP 460 (774)
T ss_pred cC-Cc-------CC-CcEEEEeccCCc
Confidence 32 11 11 478999999963
No 194
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.25 E-value=2.8e-05 Score=93.59 Aligned_cols=135 Identities=14% Similarity=0.154 Sum_probs=82.9
Q ss_pred HHHHHhhccCccchHHHHHHHHHHHHHhcCCCC--CCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEecc
Q 002758 471 TLFRALTEKIDWQDEAISVISQTIAQRRTGHED--HHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 548 (884)
Q Consensus 471 ~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~--~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~ 548 (884)
.|-+.+--.|.|.+++.++|+-.+..+ ..+ +++..-++|+++||.|-||+||+.|-+.+++..-+. ++...
T Consensus 279 ~l~~SiaPsIyG~e~VKkAilLqLfgG---v~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~----vytsg 351 (682)
T COG1241 279 ILIKSIAPSIYGHEDVKKAILLQLFGG---VKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRG----VYTSG 351 (682)
T ss_pred HHHHHhcccccCcHHHHHHHHHHhcCC---CcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCce----EEEcc
Confidence 333455677999999888776655433 222 222223579999999999999999999998876321 22222
Q ss_pred CCCCCCCCCCCCcc-ccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCC
Q 002758 549 CPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY 623 (884)
Q Consensus 549 s~~~~e~~~~s~L~-p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~ 623 (884)
..... ........ .+. .| + |. .=.+|+--.-.+|+.|||+|||+...+..|..+||.+.++.+.
T Consensus 352 kgss~-~GLTAav~rd~~-tg-e--~~------LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaK 416 (682)
T COG1241 352 KGSSA-AGLTAAVVRDKV-TG-E--WV------LEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAK 416 (682)
T ss_pred ccccc-cCceeEEEEccC-CC-e--EE------EeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecc
Confidence 21100 00000000 111 11 0 10 0123333344689999999999999999999999998877643
No 195
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.24 E-value=1.4e-05 Score=96.18 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=39.8
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHH
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
+.|+||++.+..|..++.....+. .+.. .++|+||+|+|||++++.||+.+
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~----~~~~----illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLEN----APKR----ILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccccc----CCCc----EEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999888877643321 1111 69999999999999999999876
No 196
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4e-06 Score=89.05 Aligned_cols=128 Identities=19% Similarity=0.158 Sum_probs=85.9
Q ss_pred CccchHHHHHHHHHHHH--------HhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCC
Q 002758 480 IDWQDEAISVISQTIAQ--------RRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ 551 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~--------~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~ 551 (884)
|-|=.+.|+.|.+.+.. ...|+..|+ + +|++||+|+|||..|+|+|.- ...-||++=.++.
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppk---g-----vllygppgtgktl~aravanr---tdacfirvigsel 247 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPK---G-----VLLYGPPGTGKTLCARAVANR---TDACFIRVIGSEL 247 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCC---c-----eEEeCCCCCchhHHHHHHhcc---cCceEEeehhHHH
Confidence 45555555555555533 235554443 3 999999999999999999974 3566777655521
Q ss_pred CCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHHhCCeee
Q 002758 552 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 552 ~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa-----------~~~vq~~Llq~le~G~l~ 620 (884)
+ +.|+|. | ...+..|.+..+.+.-++|||||||.. +.+||..++.+|..=.=.
T Consensus 248 ----------v-qkyvge--g---armvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgf 311 (435)
T KOG0729|consen 248 ----------V-QKYVGE--G---ARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGF 311 (435)
T ss_pred ----------H-HHHhhh--h---HHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCC
Confidence 1 345543 2 235567777777777899999999953 468999999998742222
Q ss_pred CCCCeEeecCceEEEEecCC
Q 002758 621 DSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 621 ds~Gr~V~~~naI~IlTSN~ 640 (884)
|..| |.-++|+||.
T Consensus 312 dprg------nikvlmatnr 325 (435)
T KOG0729|consen 312 DPRG------NIKVLMATNR 325 (435)
T ss_pred CCCC------CeEEEeecCC
Confidence 4443 5558888885
No 197
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.20 E-value=9.2e-06 Score=98.73 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=63.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
.++|+||+|+|||++|+++|..+ ..+|+.++.+.+.. .|.|.... .+..+....+....+|
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~-----------~~~g~~~~-----~~~~~f~~a~~~~P~I 247 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVE-----------MFVGVGAS-----RVRDMFEQAKKAAPCI 247 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHH-----------hhhcccHH-----HHHHHHHHHHhcCCcE
Confidence 49999999999999999999987 56788888763321 11221111 1223334445555689
Q ss_pred EEEccccccCH--------------HHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 594 VYLENVDKADV--------------HVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 594 IlLDEIEKa~~--------------~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
|||||||.+.. .+.+.|+..|+. +.. -.+.|||+|||.
T Consensus 248 ifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg--~~~-------~~~vivIaaTN~ 299 (644)
T PRK10733 248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG--FEG-------NEGIIVIAATNR 299 (644)
T ss_pred EEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc--ccC-------CCCeeEEEecCC
Confidence 99999998632 244555555542 111 135789999985
No 198
>PRK12377 putative replication protein; Provisional
Probab=98.19 E-value=3.8e-06 Score=90.44 Aligned_cols=104 Identities=15% Similarity=0.202 Sum_probs=66.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
+++|+||+|+|||+||.+||..+......++.+.+...-. .+ -..| ..+ .....+...+.. ..|
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~------~l-~~~~---~~~----~~~~~~l~~l~~--~dL 166 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS------RL-HESY---DNG----QSGEKFLQELCK--VDL 166 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH------HH-HHHH---hcc----chHHHHHHHhcC--CCE
Confidence 7999999999999999999999976666666665542100 00 0000 000 001233344433 469
Q ss_pred EEEccc--cccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCcc
Q 002758 594 VYLENV--DKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643 (884)
Q Consensus 594 IlLDEI--EKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~ 643 (884)
|+|||| +......+..|+++|+...-. +.=.|+|||+..+
T Consensus 167 LiIDDlg~~~~s~~~~~~l~~ii~~R~~~----------~~ptiitSNl~~~ 208 (248)
T PRK12377 167 LVLDEIGIQRETKNEQVVLNQIIDRRTAS----------MRSVGMLTNLNHE 208 (248)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHHHhc----------CCCEEEEcCCCHH
Confidence 999999 667788899999999864211 1116778998544
No 199
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=4.8e-06 Score=93.11 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=72.6
Q ss_pred CccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc-----ceEEe-ccCCCCC
Q 002758 480 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE-----NFICA-DLCPQDG 553 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~-----~fi~i-d~s~~~~ 553 (884)
.+||..+...|... .+ +-+-.+||.||+|+||+++|+++|+.+..... +.-.+ .|.....
T Consensus 3 yPW~~~~w~~l~~~-----~~---------r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~ 68 (325)
T PRK08699 3 YPWHQEQWRQIAEH-----WE---------RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQ 68 (325)
T ss_pred CCccHHHHHHHHHh-----cC---------CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhc
Confidence 48999888877655 11 11226999999999999999999999864221 11110 0000111
Q ss_pred CCCCCCCcc--ccc---cccccccccccchHHHHHHHHHhCC----CeEEEEccccccCHHHHHHHHHHHhCC
Q 002758 554 EMNNPPKFY--HQV---VGGDSVQFRGKTLADYVAWELLKKP----LSVVYLENVDKADVHVQNSLSKAIQTG 617 (884)
Q Consensus 554 e~~~~s~L~--p~g---y~G~~~g~rgk~~l~~L~eal~~~p----~~VIlLDEIEKa~~~vq~~Llq~le~G 617 (884)
..+++-.. |.+ -.|.....++...+..+.+.+...| +.|+++|+++.+++..++.|++.||+.
T Consensus 69 -~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep 140 (325)
T PRK08699 69 -GSHPDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP 140 (325)
T ss_pred -CCCCCEEEEecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC
Confidence 11222111 111 0010000112223345555555443 679999999999999999999999985
No 200
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=4.6e-06 Score=93.75 Aligned_cols=135 Identities=16% Similarity=0.058 Sum_probs=80.0
Q ss_pred CccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc-----ceEEe-ccCCCCC
Q 002758 480 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE-----NFICA-DLCPQDG 553 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~-----~fi~i-d~s~~~~ 553 (884)
.+||..+...+... .+ +-+-.+||+||+|+||+.+|+++|+.+..... +.-.+ .|.....
T Consensus 3 yPW~~~~~~~l~~~-----~~---------rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~ 68 (342)
T PRK06964 3 YPWQTDDWNRLQAL-----RA---------RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQ 68 (342)
T ss_pred CcccHHHHHHHHHh-----cC---------CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence 48999888877663 11 11226999999999999999999999875321 11100 0000111
Q ss_pred CCCCCCCc-c-ccccc------------------ccc-c---cccccchHHHHHHHHHhC----CCeEEEEccccccCHH
Q 002758 554 EMNNPPKF-Y-HQVVG------------------GDS-V---QFRGKTLADYVAWELLKK----PLSVVYLENVDKADVH 605 (884)
Q Consensus 554 e~~~~s~L-~-p~gy~------------------G~~-~---g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~ 605 (884)
..+++-. + |.+.. |.. . ..++...++.+...+... .+.|++||++|+|+..
T Consensus 69 -~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~ 147 (342)
T PRK06964 69 -GNHPDYRIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA 147 (342)
T ss_pred -CCCCCEEEEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH
Confidence 1222221 1 22110 000 0 011112234444555433 4679999999999999
Q ss_pred HHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 606 VQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 606 vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
..|.||+.||+-. .+++||++|+-
T Consensus 148 AaNaLLKtLEEPp-----------~~t~fiL~t~~ 171 (342)
T PRK06964 148 AANALLKTLEEPP-----------PGTVFLLVSAR 171 (342)
T ss_pred HHHHHHHHhcCCC-----------cCcEEEEEECC
Confidence 9999999999732 36778888764
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.15 E-value=4.5e-06 Score=78.12 Aligned_cols=120 Identities=17% Similarity=0.000 Sum_probs=66.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccc-cccc-cccccccccchHHHHHHHHHhCCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYH-QVVG-GDSVQFRGKTLADYVAWELLKKPL 591 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p-~gy~-G~~~g~rgk~~l~~L~eal~~~p~ 591 (884)
.++|.||+|+|||+++++||..+......++.+++..... ...... ..+. .......+......+...+...+.
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE----EVLDQLLLIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc----cCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999999876544677787774211 000000 0000 000000111122344444455556
Q ss_pred eEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 592 SVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 592 ~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
.||++||++.+....+............ .-......+..+|+++|.
T Consensus 80 ~viiiDei~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 80 DVLILDEITSLLDAEQEALLLLLEELRL---LLLLKSEKNLTVILTTND 125 (148)
T ss_pred CEEEEECCcccCCHHHHHHHHhhhhhHH---HHHHHhcCCCEEEEEeCC
Confidence 9999999999987766665443211000 001112235668888884
No 202
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.15 E-value=7.4e-06 Score=87.83 Aligned_cols=120 Identities=15% Similarity=0.202 Sum_probs=82.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCC------CCCccccccccccccccccchHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN------PPKFYHQVVGGDSVQFRGKTLADYVAWELL 587 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~------~s~L~p~gy~G~~~g~rgk~~l~~L~eal~ 587 (884)
+++|+||+|+||++.+.+|-+.+||.+..=++++.......... .++..+-+....+.|+..+.+++.+...+.
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 79999999999999999999999997655566655432110000 111111122344455544455566655554
Q ss_pred h---------CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCccc
Q 002758 588 K---------KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 644 (884)
Q Consensus 588 ~---------~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~~ 644 (884)
+ +++.||+|.|+|++..++|.+|.+.||.- -+++.+|+.||..+..
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY-----------s~~~RlIl~cns~Sri 170 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKY-----------SSNCRLILVCNSTSRI 170 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHH-----------hcCceEEEEecCcccc
Confidence 3 46789999999999999999999999952 1467799999975543
No 203
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.13 E-value=6.3e-06 Score=96.85 Aligned_cols=139 Identities=13% Similarity=0.107 Sum_probs=83.3
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC-CC--CCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP-QD--GEM 555 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~-~~--~e~ 555 (884)
.++||..+++.+.-++. . .-.++|.||+|+|||++++.|+..+-..... ..++.+. +. +..
T Consensus 192 ~v~Gq~~~~~al~laa~---~------------G~~llliG~~GsGKTtLak~L~gllpp~~g~-e~le~~~i~s~~g~~ 255 (506)
T PRK09862 192 DVIGQEQGKRGLEITAA---G------------GHNLLLIGPPGTGKTMLASRINGLLPDLSNE-EALESAAILSLVNAE 255 (506)
T ss_pred EEECcHHHHhhhheecc---C------------CcEEEEECCCCCcHHHHHHHHhccCCCCCCc-EEEecchhhhhhccc
Confidence 57899877766433221 1 1279999999999999999999877432111 1223221 00 000
Q ss_pred CCCCCcc-c-----------cccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCC-
Q 002758 556 NNPPKFY-H-----------QVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS- 622 (884)
Q Consensus 556 ~~~s~L~-p-----------~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds- 622 (884)
.....+. + .+++|... ..-.+.+....++|+|||||+.+++.+|..|++.||+|.++..
T Consensus 256 ~~~~~~~~rPfr~ph~~~s~~~l~GGg~--------~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r 327 (506)
T PRK09862 256 SVQKQWRQRPFRSPHHSASLTAMVGGGA--------IPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSR 327 (506)
T ss_pred cccCCcCCCCccCCCccchHHHHhCCCc--------eehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEec
Confidence 0000000 0 01111100 0112345556678999999999999999999999999998643
Q ss_pred CCeEe-ecCceEEEEecCCC
Q 002758 623 YGREV-SVSNAIFVTASSFV 641 (884)
Q Consensus 623 ~Gr~V-~~~naI~IlTSN~g 641 (884)
.|..+ .-.+..+|.|+|..
T Consensus 328 ~g~~~~~pa~f~lIAa~NP~ 347 (506)
T PRK09862 328 TRAKITYPARFQLVAAMNPS 347 (506)
T ss_pred CCcceeccCCEEEEEeecCc
Confidence 23233 23567899999963
No 204
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.1e-05 Score=87.70 Aligned_cols=129 Identities=17% Similarity=0.196 Sum_probs=81.0
Q ss_pred cCccchHHHHHHHHHHHHH--------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 479 KIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~--------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
.|.|-.+.++++.+.|..+ +.|+ |.|.-++++||+|+|||.+|+++|..+ +-+|+.+-.+.
T Consensus 133 ~~ggl~~qirelre~ielpl~np~lf~rvgI--------k~Pkg~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~ 201 (388)
T KOG0651|consen 133 NVGGLFYQIRELREVIELPLTNPELFLRVGI--------KPPKGLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSA 201 (388)
T ss_pred HhCChHHHHHHHHhheEeeccCchhccccCC--------CCCceeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhh
Confidence 3455555556655555433 2233 234469999999999999999999998 55677666553
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccc-----------cCHHHHHHHHHHHhCCee
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDK-----------ADVHVQNSLSKAIQTGKL 619 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEK-----------a~~~vq~~Llq~le~G~l 619 (884)
..+ +|.|-... -+.+++..| +....+|||+||||. ++..+|..|..+++.=.=
T Consensus 202 lv~-----------kyiGEsaR----lIRemf~yA-~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdg 265 (388)
T KOG0651|consen 202 LVD-----------KYIGESAR----LIRDMFRYA-REVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDG 265 (388)
T ss_pred hhh-----------hhcccHHH----HHHHHHHHH-hhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhcc
Confidence 321 33332211 122333444 333449999999995 568899999999984222
Q ss_pred eCCCCeEeecCceEEEEecCC
Q 002758 620 PDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 620 ~ds~Gr~V~~~naI~IlTSN~ 640 (884)
.|. +..+-+|||+|.
T Consensus 266 fd~------l~rVk~ImatNr 280 (388)
T KOG0651|consen 266 FDT------LHRVKTIMATNR 280 (388)
T ss_pred chh------cccccEEEecCC
Confidence 222 234559999995
No 205
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1e-05 Score=85.44 Aligned_cols=128 Identities=20% Similarity=0.207 Sum_probs=81.4
Q ss_pred CccchHHHHHHHHHHHHH--------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCC
Q 002758 480 IDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ 551 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~--------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~ 551 (884)
|.|-+..|+.|.+.|... ..|+..| .+ +||+||+|+|||.+|+++|..- .-.||++..++.
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP---KG-----vlLygppgtGktLlaraVahht---~c~firvsgsel 217 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQP---KG-----VLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSEL 217 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCC---cc-----eEEecCCCCchhHHHHHHHhhc---ceEEEEechHHH
Confidence 445555556665555431 2344433 33 9999999999999999999865 456777776631
Q ss_pred CCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHHhCCeee
Q 002758 552 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 552 ~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa-----------~~~vq~~Llq~le~G~l~ 620 (884)
+ +.|.|. | ...+..|.-..++...+|||+||||.. |.++|..++.++..=
T Consensus 218 ----------v-qk~ige--g---srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql--- 278 (404)
T KOG0728|consen 218 ----------V-QKYIGE--G---SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL--- 278 (404)
T ss_pred ----------H-HHHhhh--h---HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc---
Confidence 1 233332 2 223444554556666799999999964 678999999888631
Q ss_pred CCCCeEeecCceEEEEecCC
Q 002758 621 DSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 621 ds~Gr~V~~~naI~IlTSN~ 640 (884)
.|-+ ..+|.-+||+||.
T Consensus 279 --dgfe-atknikvimatnr 295 (404)
T KOG0728|consen 279 --DGFE-ATKNIKVIMATNR 295 (404)
T ss_pred --cccc-cccceEEEEeccc
Confidence 1111 1145669999985
No 206
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=1.6e-05 Score=87.37 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=69.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCC--ccccccccccccccccchHHHHHHHHHhCC-
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPK--FYHQVVGGDSVQFRGKTLADYVAWELLKKP- 590 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~--L~p~gy~G~~~g~rgk~~l~~L~eal~~~p- 590 (884)
.+||.||+|+||+.+|.++|+.++....+- .|..... ..+++- +.|.+. + ...+......+.+.+...|
T Consensus 21 AyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c~~~~~-~~HPD~~~i~p~~~-~---~~I~idqiR~l~~~~~~~p~ 92 (290)
T PRK05917 21 AIILHGQDLSNLSARAYELASLILKETSPE---AAYKISQ-KIHPDIHEFSPQGK-G---RLHSIETPRAIKKQIWIHPY 92 (290)
T ss_pred eEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HHHHHhc-CCCCCEEEEecCCC-C---CcCcHHHHHHHHHHHhhCcc
Confidence 699999999999999999999998643221 1211111 112221 112211 0 0112222345556665544
Q ss_pred ---CeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 591 ---LSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 591 ---~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
+.|++||++|+++.+.+|+|++.||+-. .+++||+.|+-
T Consensus 93 e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp-----------~~~~fiL~~~~ 134 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLDAISAFLKVLEDPP-----------QHGVIILTSAK 134 (290)
T ss_pred CCCceEEEEechhhcCHHHHHHHHHHhhcCC-----------CCeEEEEEeCC
Confidence 5899999999999999999999999732 36788887763
No 207
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.07 E-value=0.0001 Score=79.35 Aligned_cols=70 Identities=10% Similarity=0.162 Sum_probs=47.4
Q ss_pred HHhcccceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Q 002758 767 DFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGF 843 (884)
Q Consensus 767 efl~rID~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~~~L 843 (884)
.|..|+...+.+.|++.+++.+++...+... +......+++++++.|.+.+- .-.|.|.......+..+.
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~-----g~~~~~~~~~~~~~~i~~~s~--G~p~~i~~l~~~~~~~a~ 247 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRLERA-----GNRDAPVFSEGAFDAIHRFSR--GIPRLINILCDRLLLSAF 247 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHHHHc-----CCCCCCCcCHHHHHHHHHHcC--CcccHHHHHHHHHHHHHH
Confidence 4556677789999999999999998887643 222234589999999998622 012455555555554443
No 208
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=7.3e-06 Score=88.47 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=71.9
Q ss_pred HhHHHHHHHhhcc------------CccchHHHHHHHHHHHHH------hcCCCCCCCCCCCCceEEEEEcCCCCchHHH
Q 002758 467 SNWKTLFRALTEK------------IDWQDEAISVISQTIAQR------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKI 528 (884)
Q Consensus 467 e~lk~L~~~L~~~------------ViGQ~eAi~~Ia~aI~~~------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~L 528 (884)
..-+.|...|+.. |-|-+.|.+++.++|... ..|.+ +|-. -+||+||+|+||++|
T Consensus 110 pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR---~Pwr----giLLyGPPGTGKSYL 182 (439)
T KOG0739|consen 110 PEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR---KPWR----GILLYGPPGTGKSYL 182 (439)
T ss_pred hhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCC---Ccce----eEEEeCCCCCcHHHH
Confidence 3456777777532 456666788888887543 23322 2221 499999999999999
Q ss_pred HHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc
Q 002758 529 AIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA 602 (884)
Q Consensus 529 A~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa 602 (884)
|+|+|-.- +.-|..+.-+. |+ ..+.|..+. .+..|.+..+++..+||||||||-+
T Consensus 183 AKAVATEA---nSTFFSvSSSD----------Lv-SKWmGESEk-----LVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 183 AKAVATEA---NSTFFSVSSSD----------LV-SKWMGESEK-----LVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred HHHHHhhc---CCceEEeehHH----------HH-HHHhccHHH-----HHHHHHHHHHhcCCcEEEeehhhhh
Confidence 99999765 34455544331 11 012233332 4567888888888899999999954
No 209
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.03 E-value=6.7e-06 Score=88.36 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=70.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHc---CCCcceEEeccCCCCCCCCCCCCcccccccccccc-ccccchHHHHHHHHHhC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIY---GGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKK 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~---gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~ 589 (884)
.+|+.||+|.||+.||+.|.+.-. .-..+||.++|+...+. ...+.| +|+..| |.|. ...-.+-++..
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd-~amsal-----fghvkgaftga--~~~r~gllrsa 281 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGD-TAMSAL-----FGHVKGAFTGA--RESREGLLRSA 281 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCc-hHHHHH-----Hhhhccccccc--hhhhhhhhccC
Confidence 599999999999999998776432 22568999999954321 112222 344443 3222 12223445666
Q ss_pred CCeEEEEccccccCHHHHHHHHHHHhCCeeeC
Q 002758 590 PLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 590 p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~d 621 (884)
..+.+|||||..+..+-|..|+++||+.+|.-
T Consensus 282 dggmlfldeigelgadeqamllkaieekrf~p 313 (531)
T COG4650 282 DGGMLFLDEIGELGADEQAMLLKAIEEKRFYP 313 (531)
T ss_pred CCceEehHhhhhcCccHHHHHHHHHHhhccCC
Confidence 78899999999999999999999999988754
No 210
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.7e-05 Score=93.66 Aligned_cols=118 Identities=20% Similarity=0.119 Sum_probs=72.8
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCC--CCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHE--DHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 555 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~--~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~ 555 (884)
+.|.|-.++...+.+.|..... .. -..-|+ +-.+-+||+||+|||||.||.++|... .-+||.+...+.-
T Consensus 667 ~digg~~~~k~~l~~~i~~P~k-yp~if~~~pl-r~~~giLLyGppGcGKT~la~a~a~~~---~~~fisvKGPElL--- 738 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSK-YPQIFANCPL-RLRTGILLYGPPGCGKTLLASAIASNS---NLRFISVKGPELL--- 738 (952)
T ss_pred eecccHHHHHHHHHHHHhcccc-chHHHhhCCc-ccccceEEECCCCCcHHHHHHHHHhhC---CeeEEEecCHHHH---
Confidence 3466666777777666654210 00 000011 112349999999999999999999865 5667776654211
Q ss_pred CCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCH-----------HHHHHHHHHHhC
Q 002758 556 NNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV-----------HVQNSLSKAIQT 616 (884)
Q Consensus 556 ~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~-----------~vq~~Llq~le~ 616 (884)
..|.|..+. -++.+.+..+....+|+||||+|...| .|.|.|+.-|+.
T Consensus 739 --------~KyIGaSEq-----~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG 797 (952)
T KOG0735|consen 739 --------SKYIGASEQ-----NVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDG 797 (952)
T ss_pred --------HHHhcccHH-----HHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcc
Confidence 145555443 233444444555569999999997654 477888877763
No 211
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.94 E-value=5.7e-05 Score=85.63 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=86.6
Q ss_pred HhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCC
Q 002758 475 ALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGE 554 (884)
Q Consensus 475 ~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e 554 (884)
.+...++||+....+|.-....... + -+|+.|+.|+|||+++|+||.+|- .--+.++|.+...
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~i---------g----gvLI~G~kGtaKSt~~Rala~LLp---~~~~V~gc~f~cd- 76 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQI---------G----GALIAGEKGTAKSTLARALADLLP---EIEVVIGCPFNCD- 76 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccccc---------c----eeEEecCCCccHHHHHHHHHHhCC---ccceecCCCCCCC-
Confidence 4567899999776554433221111 2 488999999999999999999983 2222234432111
Q ss_pred CCCCC--------------Ccc-ccc---ccc----cccc-ccccchHHHHHHHHH------------hCCCeEEEEccc
Q 002758 555 MNNPP--------------KFY-HQV---VGG----DSVQ-FRGKTLADYVAWELL------------KKPLSVVYLENV 599 (884)
Q Consensus 555 ~~~~s--------------~L~-p~g---y~G----~~~g-~rgk~~l~~L~eal~------------~~p~~VIlLDEI 599 (884)
..++. .+. +.. +++ ..+. ..|.. .+..+++ +...+|++||||
T Consensus 77 P~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGsl---Di~ka~~~g~~af~PGlLa~AnRGIlYvDEv 153 (423)
T COG1239 77 PDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSL---DIEKALEEGPKAFQPGLLARANRGILYVDEV 153 (423)
T ss_pred CCChhhhhHHHHhhccccccccccceecceecCCCccchhhhcccc---CHHHHHhcCccccCCcchhhccCCEEEEecc
Confidence 11110 000 001 111 1111 11110 1122222 233579999999
Q ss_pred cccCHHHHHHHHHHHhCCe-eeCCCCeEeecC-ceEEEEecCCC
Q 002758 600 DKADVHVQNSLSKAIQTGK-LPDSYGREVSVS-NAIFVTASSFV 641 (884)
Q Consensus 600 EKa~~~vq~~Llq~le~G~-l~ds~Gr~V~~~-naI~IlTSN~g 641 (884)
.-++..+|+.||+++++|+ ...-.|-.+... +.++|.|.|.-
T Consensus 154 nlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE 197 (423)
T COG1239 154 NLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE 197 (423)
T ss_pred ccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcc
Confidence 9999999999999999993 333456555443 68899999974
No 212
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.92 E-value=0.00034 Score=80.03 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=44.4
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Q 002758 774 KIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGF 843 (884)
Q Consensus 774 ~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~~~L 843 (884)
.++.-.|++.+....|+.+.... -.+.++++++++|+..... ..|.++.-++++...++
T Consensus 237 l~~~I~~Pd~e~r~aiL~kka~~---------~~~~i~~ev~~~la~~~~~--nvReLegaL~~l~~~a~ 295 (408)
T COG0593 237 LVVEIEPPDDETRLAILRKKAED---------RGIEIPDEVLEFLAKRLDR--NVRELEGALNRLDAFAL 295 (408)
T ss_pred eEEeeCCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHH
Confidence 36777889999999998884332 2578999999999997544 56788888877766544
No 213
>PRK08116 hypothetical protein; Validated
Probab=97.91 E-value=5.6e-05 Score=82.46 Aligned_cols=106 Identities=9% Similarity=0.109 Sum_probs=68.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
.++|+|++|+|||+||.+||+.+.....+++.+++...-. .+ -..|.+.. ......+.+.+... .+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~------~i-~~~~~~~~-----~~~~~~~~~~l~~~--dl 181 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN------RI-KSTYKSSG-----KEDENEIIRSLVNA--DL 181 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH------HH-HHHHhccc-----cccHHHHHHHhcCC--CE
Confidence 6999999999999999999999876666777777552100 00 00010000 00012344445443 59
Q ss_pred EEEccc--cccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCcc
Q 002758 594 VYLENV--DKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643 (884)
Q Consensus 594 IlLDEI--EKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~ 643 (884)
|+|||+ ++.....+..|+.+|+... . . +..+|+|||....
T Consensus 182 LviDDlg~e~~t~~~~~~l~~iin~r~-~--~-------~~~~IiTsN~~~~ 223 (268)
T PRK08116 182 LILDDLGAERDTEWAREKVYNIIDSRY-R--K-------GLPTIVTTNLSLE 223 (268)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHHH-H--C-------CCCEEEECCCCHH
Confidence 999999 7788889999999998642 1 1 1238889997544
No 214
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3.2e-05 Score=84.51 Aligned_cols=107 Identities=20% Similarity=0.254 Sum_probs=58.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCC--CCCCCccccccccccccccccch---HHHHHHHHHh
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM--NNPPKFYHQVVGGDSVQFRGKTL---ADYVAWELLK 588 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~--~~~s~L~p~gy~G~~~g~rgk~~---l~~L~eal~~ 588 (884)
.+|++||||+|||.|++|||+.|- |+.+-.++.... .+.++||. .+++- -||-+ -+.+.+-+..
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLS------IR~~~~y~~~~liEinshsLFS-KWFsE----SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLS------IRTNDRYYKGQLIEINSHSLFS-KWFSE----SGKLVAKMFQKIQELVED 247 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhhe------eeecCccccceEEEEehhHHHH-HHHhh----hhhHHHHHHHHHHHHHhC
Confidence 699999999999999999999883 222222111000 00112221 11111 12211 1344444443
Q ss_pred CC-CeEEEEccccccCH---------------HHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 589 KP-LSVVYLENVDKADV---------------HVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 589 ~p-~~VIlLDEIEKa~~---------------~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
.. .-.|+|||||.+.. .+.|.|+.-|+.=+ ...|+++..|||+
T Consensus 248 ~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK---------~~~NvliL~TSNl 306 (423)
T KOG0744|consen 248 RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK---------RYPNVLILATSNL 306 (423)
T ss_pred CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc---------cCCCEEEEeccch
Confidence 22 23578999996432 36677777777422 2347777777775
No 215
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=4.6e-05 Score=90.49 Aligned_cols=135 Identities=15% Similarity=0.122 Sum_probs=82.5
Q ss_pred hccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCC
Q 002758 477 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMN 556 (884)
Q Consensus 477 ~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~ 556 (884)
...|-|.++|++++.+.|.-.+...+.. .--++.+.-+++.||||+|||.||+|+|... +-||..+..+.+-.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~-~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVe--- 221 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQ-ALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVE--- 221 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhH-hcccccccceeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhh---
Confidence 3568999999999998887654211110 0001223349999999999999999999765 67777766653211
Q ss_pred CCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHHhCCeeeCC
Q 002758 557 NPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADV--------------HVQNSLSKAIQTGKLPDS 622 (884)
Q Consensus 557 ~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~--------------~vq~~Llq~le~G~l~ds 622 (884)
=|+|. |...+..+.+..+++-.+||||||||.... +..|.|+.-||.- ..+
T Consensus 222 --------mfVGv-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF--~~~ 286 (596)
T COG0465 222 --------MFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF--GGN 286 (596)
T ss_pred --------hhcCC-----CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC--CCC
Confidence 12222 122233444444444449999999996532 3555555555531 111
Q ss_pred CCeEeecCceEEEEecCC
Q 002758 623 YGREVSVSNAIFVTASSF 640 (884)
Q Consensus 623 ~Gr~V~~~naI~IlTSN~ 640 (884)
..+|+|..||.
T Consensus 287 -------~gviviaaTNR 297 (596)
T COG0465 287 -------EGVIVIAATNR 297 (596)
T ss_pred -------CceEEEecCCC
Confidence 24678888886
No 216
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=6.7e-05 Score=85.57 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=58.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHh-CCCeE
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK-KPLSV 593 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~-~p~~V 593 (884)
+||+|||||||+.|..|||..| +..+.-++++.-.. + +.|..-+.. .+.+|
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~----------------n---------~dLr~LL~~t~~kSI 289 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKL----------------D---------SDLRHLLLATPNKSI 289 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccC----------------c---------HHHHHHHHhCCCCcE
Confidence 9999999999999999999988 44444455542110 0 124444433 34689
Q ss_pred EEEccccccC------------------HHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 594 VYLENVDKAD------------------VHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 594 IlLDEIEKa~------------------~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
|+||+||-+- .-.+..||.+++. +..+.| ..-|||||||-
T Consensus 290 ivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG--lwSscg-----~ERIivFTTNh 347 (457)
T KOG0743|consen 290 LLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG--LWSSCG-----DERIIVFTTNH 347 (457)
T ss_pred EEEeecccccccccccccccccccCCcceeehHHhhhhhcc--ccccCC-----CceEEEEecCC
Confidence 9999999651 1234557777663 111122 13589999994
No 217
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00044 Score=77.66 Aligned_cols=31 Identities=10% Similarity=-0.038 Sum_probs=24.9
Q ss_pred hcccceeeecCCCCHHHHHHHHHHHHHHHHh
Q 002758 769 FNQRVKIVAFKAFNFDALAEKILKDINASFR 799 (884)
Q Consensus 769 l~rID~IVvFkPLd~e~L~eIi~~~L~~~~~ 799 (884)
-+|||++|.|.-...++-.+++...+++...
T Consensus 503 ~DRide~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 503 NDRIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred HhhhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 4688889999888888888888888877653
No 218
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=6e-05 Score=82.96 Aligned_cols=127 Identities=16% Similarity=0.113 Sum_probs=78.3
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc----ceEEe-ccCCCCCCCC
Q 002758 482 WQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE----NFICA-DLCPQDGEMN 556 (884)
Q Consensus 482 GQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~----~fi~i-d~s~~~~e~~ 556 (884)
.|..++..+..++.+.+. .-.+||.|| +||+.+|+++|+.++.... +.-.+ .|..... ..
T Consensus 6 ~q~~~~~~L~~~~~~~rl------------~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~-~~ 70 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRL------------NHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQ-GE 70 (290)
T ss_pred HHHHHHHHHHHHHHcCCc------------ceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhc-CC
Confidence 477778887777776543 126999996 6899999999999975431 11000 0110110 11
Q ss_pred CCCCcc--ccccccccccccccchHHHHHHHHHhC----CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecC
Q 002758 557 NPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKK----PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVS 630 (884)
Q Consensus 557 ~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~~----p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~ 630 (884)
+++-.. |.+ ..++...+..+...+... ++.|++||++|+|+...+|.|++.||+-- .
T Consensus 71 HPD~~~i~p~~------~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp-----------~ 133 (290)
T PRK07276 71 FSDVTVIEPQG------QVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQ-----------S 133 (290)
T ss_pred CCCeeeecCCC------CcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCC-----------C
Confidence 221111 211 112222334455555443 46899999999999999999999999842 3
Q ss_pred ceEEEEecCC
Q 002758 631 NAIFVTASSF 640 (884)
Q Consensus 631 naI~IlTSN~ 640 (884)
+++||++|+-
T Consensus 134 ~t~~iL~t~~ 143 (290)
T PRK07276 134 EIYIFLLTND 143 (290)
T ss_pred CeEEEEEECC
Confidence 6788888864
No 219
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=6.9e-05 Score=92.95 Aligned_cols=131 Identities=16% Similarity=0.171 Sum_probs=82.8
Q ss_pred cCccchHHHHHHHHHHHHH--------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 479 KIDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~--------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
.|-|-+..+..+.+.|... ..++..|+ + +||+||+|+|||.+|++||..+-..+.. +.+.|..
T Consensus 266 ~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPr---g-----vL~~GppGTGkTl~araLa~~~s~~~~k-isffmrk 336 (1080)
T KOG0732|consen 266 SVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPR---G-----VLFHGPPGTGKTLMARALAAACSRGNRK-ISFFMRK 336 (1080)
T ss_pred ccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCc---c-----eeecCCCCCchhHHHHhhhhhhcccccc-cchhhhc
Confidence 3455555555555555442 12333333 3 9999999999999999999988544333 3444442
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEcccc-----------ccCHHHHHHHHHHHhCCee
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVD-----------KADVHVQNSLSKAIQTGKL 619 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIE-----------Ka~~~vq~~Llq~le~G~l 619 (884)
-. +.- ..++|..+. .+..+.+..+++..+|||||||| +.|..+...|+.+|+.=
T Consensus 337 ga----D~l----skwvgEaER-----qlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGl-- 401 (1080)
T KOG0732|consen 337 GA----DCL----SKWVGEAER-----QLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGL-- 401 (1080)
T ss_pred Cc----hhh----ccccCcHHH-----HHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCC--
Confidence 11 111 134555443 34667777788888999999999 34556777777777731
Q ss_pred eCCCCeEeecCceEEEEecCC
Q 002758 620 PDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 620 ~ds~Gr~V~~~naI~IlTSN~ 640 (884)
++. +.+++|-+||.
T Consensus 402 -dsR------gqVvvigATnR 415 (1080)
T KOG0732|consen 402 -DSR------GQVVVIGATNR 415 (1080)
T ss_pred -CCC------CceEEEcccCC
Confidence 233 36778888875
No 220
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.78 E-value=0.0001 Score=82.67 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=66.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
+++|+||+|+|||+||.+||..+...+..++.+.+...-. .+. ......... . ......+.. .-+
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~------~l~-~~~~~~~~~-----~-~~~~~~l~~--~DL 249 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE------ILR-EIRFNNDKE-----L-EEVYDLLIN--CDL 249 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH------HHH-HHHhccchh-----H-HHHHHHhcc--CCE
Confidence 6999999999999999999999987777777776542100 000 000000000 0 111233433 369
Q ss_pred EEEccc--cccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCccc
Q 002758 594 VYLENV--DKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 644 (884)
Q Consensus 594 IlLDEI--EKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~~ 644 (884)
++|||+ +..++..+..|+.+|+..... + --+|+|||...+.
T Consensus 250 LIIDDlG~e~~t~~~~~~Lf~iin~R~~~---~-------k~tIiTSNl~~~e 292 (329)
T PRK06835 250 LIIDDLGTEKITEFSKSELFNLINKRLLR---Q-------KKMIISTNLSLEE 292 (329)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHHC---C-------CCEEEECCCCHHH
Confidence 999999 556788889999999864321 1 1278899985543
No 221
>PF13173 AAA_14: AAA domain
Probab=97.77 E-value=7.7e-05 Score=71.93 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=56.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
++++.||.|||||++++.+++.+. ....++.+++..... ...... . ....+.+.+ .....+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~-------------~~~~~~---~-~~~~~~~~~-~~~~~~ 64 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRD-------------RRLADP---D-LLEYFLELI-KPGKKY 64 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHH-------------HHHhhh---h-hHHHHHHhh-ccCCcE
Confidence 799999999999999999998886 556778888773211 000000 0 011222221 124579
Q ss_pred EEEccccccCHHHHHHHHHHHhCC
Q 002758 594 VYLENVDKADVHVQNSLSKAIQTG 617 (884)
Q Consensus 594 IlLDEIEKa~~~vq~~Llq~le~G 617 (884)
||||||.+++ .....+..+.+++
T Consensus 65 i~iDEiq~~~-~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 65 IFIDEIQYLP-DWEDALKFLVDNG 87 (128)
T ss_pred EEEehhhhhc-cHHHHHHHHHHhc
Confidence 9999999996 6888888888865
No 222
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.77 E-value=0.00019 Score=86.17 Aligned_cols=101 Identities=14% Similarity=0.045 Sum_probs=69.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHH----------
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAW---------- 584 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~e---------- 584 (884)
+++.|+.|+||++++++|+.+|-. ..+|+.+..+.-+ . ..+|.- .|..
T Consensus 28 v~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~~t~------~-----~L~Gg~----------Dl~~~l~~g~~~~~ 85 (584)
T PRK13406 28 VVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPGIAD------D-----RLLGGL----------DLAATLRAGRPVAQ 85 (584)
T ss_pred EEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCCCcH------H-----HccCCc----------hHHhHhhcCCcCCC
Confidence 999999999999999999998832 3467666544211 1 222211 1111
Q ss_pred --HHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCC-CCeEeecCc-eEEEEe
Q 002758 585 --ELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS-YGREVSVSN-AIFVTA 637 (884)
Q Consensus 585 --al~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds-~Gr~V~~~n-aI~IlT 637 (884)
.+....++|+||||+..+++.+++.|+++|++|.++.. .|..+.+.- -++|.|
T Consensus 86 pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat 142 (584)
T PRK13406 86 RGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVAL 142 (584)
T ss_pred CCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec
Confidence 22233468999999999999999999999999988763 355555543 334443
No 223
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00012 Score=77.89 Aligned_cols=126 Identities=21% Similarity=0.247 Sum_probs=73.8
Q ss_pred CccchHHHHHHHHHHHHH--------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCC
Q 002758 480 IDWQDEAISVISQTIAQR--------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQ 551 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~--------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~ 551 (884)
|.|-+..|.++.++|... ..|++.| .+ +|++||+|+|||.||+|-|..- ..-|+.+....
T Consensus 173 iGGldkQIqELvEAiVLpmth~ekF~~lgi~pP---KG-----vLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQ- 240 (424)
T KOG0652|consen 173 IGGLDKQIQELVEAIVLPMTHKEKFENLGIRPP---KG-----VLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQ- 240 (424)
T ss_pred cccHHHHHHHHHHHhccccccHHHHHhcCCCCC---Cc-----eEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchH-
Confidence 556666666777766432 2444333 23 9999999999999999988653 33333332110
Q ss_pred CCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHHhC--Ce
Q 002758 552 DGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA-----------DVHVQNSLSKAIQT--GK 618 (884)
Q Consensus 552 ~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa-----------~~~vq~~Llq~le~--G~ 618 (884)
|+ +-|.|.... ...+.++-|-. +...||||||+|.. +.+||..++.++.. |-
T Consensus 241 ---------LV-QMfIGdGAk----LVRDAFaLAKE-kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGF 305 (424)
T KOG0652|consen 241 ---------LV-QMFIGDGAK----LVRDAFALAKE-KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 305 (424)
T ss_pred ---------HH-hhhhcchHH----HHHHHHHHhhc-cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCC
Confidence 10 112232111 12244444333 44589999999853 57899999988863 32
Q ss_pred eeCCCCeEeecCceEEEEecCC
Q 002758 619 LPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 619 l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
-.+ .++-+|.+||.
T Consensus 306 ss~--------~~vKviAATNR 319 (424)
T KOG0652|consen 306 SSD--------DRVKVIAATNR 319 (424)
T ss_pred CCc--------cceEEEeeccc
Confidence 111 13448888885
No 224
>PRK06526 transposase; Provisional
Probab=97.72 E-value=2.4e-05 Score=84.62 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=61.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
.++|+||+|+|||+||.+|+..+...+..++.+.+.. ++..-......+ .. ......+ ....|
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~----------l~~~l~~~~~~~----~~-~~~l~~l--~~~dl 162 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ----------WVARLAAAHHAG----RL-QAELVKL--GRYPL 162 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH----------HHHHHHHHHhcC----cH-HHHHHHh--ccCCE
Confidence 6999999999999999999998865444443333321 100000000001 00 1111222 23579
Q ss_pred EEEcccccc--CHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCcc
Q 002758 594 VYLENVDKA--DVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643 (884)
Q Consensus 594 IlLDEIEKa--~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~ 643 (884)
|+|||++.. ++..++.|+++++... . +.-+|+|||...+
T Consensus 163 LIIDD~g~~~~~~~~~~~L~~li~~r~-~----------~~s~IitSn~~~~ 203 (254)
T PRK06526 163 LIVDEVGYIPFEPEAANLFFQLVSSRY-E----------RASLIVTSNKPFG 203 (254)
T ss_pred EEEcccccCCCCHHHHHHHHHHHHHHH-h----------cCCEEEEcCCCHH
Confidence 999999976 5788889999998421 1 1127788997544
No 225
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.72 E-value=9.1e-05 Score=82.32 Aligned_cols=102 Identities=12% Similarity=0.006 Sum_probs=60.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
.++|+||+|+|||+||.|||..+...+.++..+.+...-. .+- . ....+ ....+...+.+ ..|
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~------~lk--~--~~~~~-----~~~~~l~~l~~--~dl 220 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR------ELK--N--SISDG-----SVKEKIDAVKE--APV 220 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH------HHH--H--HHhcC-----cHHHHHHHhcC--CCE
Confidence 6999999999999999999999976555555555442100 000 0 00000 11234444544 369
Q ss_pred EEEcccc--ccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCC
Q 002758 594 VYLENVD--KADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFV 641 (884)
Q Consensus 594 IlLDEIE--Ka~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g 641 (884)
++||||. .+.+-+...|+..|-+.++.. +--.|+|||..
T Consensus 221 LiIDDiG~e~~s~~~~~~ll~~Il~~R~~~---------~~~ti~TSNl~ 261 (306)
T PRK08939 221 LMLDDIGAEQMSSWVRDEVLGVILQYRMQE---------ELPTFFTSNFD 261 (306)
T ss_pred EEEecCCCccccHHHHHHHHHHHHHHHHHC---------CCeEEEECCCC
Confidence 9999996 455566655555442222211 12277899974
No 226
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=4.7e-05 Score=84.76 Aligned_cols=67 Identities=22% Similarity=0.247 Sum_probs=47.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHH----Hh
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL----LK 588 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal----~~ 588 (884)
.-+|++||+|||||.+|+|+|+.. +.+|+.+.|+...+ ..+|..+ .+..|+ .+
T Consensus 128 kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt~-----------KWfgE~e---------Klv~AvFslAsK 184 (386)
T KOG0737|consen 128 KGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLTS-----------KWFGEAQ---------KLVKAVFSLASK 184 (386)
T ss_pred ccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccch-----------hhHHHHH---------HHHHHHHhhhhh
Confidence 359999999999999999999976 67899898884322 1222222 333333 23
Q ss_pred CCCeEEEEcccccc
Q 002758 589 KPLSVVYLENVDKA 602 (884)
Q Consensus 589 ~p~~VIlLDEIEKa 602 (884)
-..+||||||||.+
T Consensus 185 l~P~iIFIDEvds~ 198 (386)
T KOG0737|consen 185 LQPSIIFIDEVDSF 198 (386)
T ss_pred cCcceeehhhHHHH
Confidence 33589999999954
No 227
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=4.5e-05 Score=87.73 Aligned_cols=135 Identities=15% Similarity=0.143 Sum_probs=82.1
Q ss_pred cccchHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc
Q 002758 462 CQFDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE 541 (884)
Q Consensus 462 ~~~d~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~ 541 (884)
+.+|.|--+.+.++...+|+--+ .++. .|+.-- . -+||+||||||||.|||.|...|...+.
T Consensus 224 GGLd~EFs~IFRRAFAsRvFpp~-vie~---------lGi~HV---K-----GiLLyGPPGTGKTLiARqIGkMLNAreP 285 (744)
T KOG0741|consen 224 GGLDKEFSDIFRRAFASRVFPPE-VIEQ---------LGIKHV---K-----GILLYGPPGTGKTLIARQIGKMLNAREP 285 (744)
T ss_pred ccchHHHHHHHHHHHHhhcCCHH-HHHH---------cCccce---e-----eEEEECCCCCChhHHHHHHHHHhcCCCC
Confidence 34566666666667766665432 2221 233211 1 2999999999999999999999976655
Q ss_pred ceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHh----CC---CeEEEEccccc-------------
Q 002758 542 NFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----KP---LSVVYLENVDK------------- 601 (884)
Q Consensus 542 ~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~----~p---~~VIlLDEIEK------------- 601 (884)
.+| +..+ ++ ..|+|..+.-.+ ..+++|-.+ .+ --||+|||||.
T Consensus 286 KIV--NGPe----------IL-~KYVGeSE~NvR----~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TG 348 (744)
T KOG0741|consen 286 KIV--NGPE----------IL-NKYVGESEENVR----KLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTG 348 (744)
T ss_pred ccc--CcHH----------HH-HHhhcccHHHHH----HHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCC
Confidence 443 2221 11 256776654222 334433221 22 24999999994
Q ss_pred cCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 602 ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 602 a~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
.|..|.|.||.-|+.= -.+.|.++|-.||.
T Consensus 349 VhD~VVNQLLsKmDGV---------eqLNNILVIGMTNR 378 (744)
T KOG0741|consen 349 VHDTVVNQLLSKMDGV---------EQLNNILVIGMTNR 378 (744)
T ss_pred ccHHHHHHHHHhcccH---------HhhhcEEEEeccCc
Confidence 3556778887777621 13568888888885
No 228
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.69 E-value=0.00023 Score=76.61 Aligned_cols=106 Identities=8% Similarity=0.102 Sum_probs=65.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
.++|+|++|+|||+||.+||..+...+..++.+++...-. .+ -..|. .. ......+...+.. ..|
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~------~l-~~~~~--~~----~~~~~~~l~~l~~--~dl 165 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS------AM-KDTFS--NS----ETSEEQLLNDLSN--VDL 165 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH------HH-HHHHh--hc----cccHHHHHHHhcc--CCE
Confidence 6999999999999999999999976667777776552110 00 00000 00 0011234444543 469
Q ss_pred EEEccccccC--HHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCccc
Q 002758 594 VYLENVDKAD--VHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 644 (884)
Q Consensus 594 IlLDEIEKa~--~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~~ 644 (884)
|+|||++... .-.+..|.++|+.. +.. +--+|+|||+..+.
T Consensus 166 LvIDDig~~~~s~~~~~~l~~Ii~~R-y~~---------~~~tiitSNl~~~~ 208 (244)
T PRK07952 166 LVIDEIGVQTESRYEKVIINQIVDRR-SSS---------KRPTGMLTNSNMEE 208 (244)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHH-HhC---------CCCEEEeCCCCHHH
Confidence 9999998654 33456788888753 221 12277889985443
No 229
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.69 E-value=3.4e-05 Score=73.54 Aligned_cols=98 Identities=14% Similarity=0.204 Sum_probs=62.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCC-----CcceEEeccCCCCCCCCCCCCcccc--cccccccc--ccccchHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGG-----KENFICADLCPQDGEMNNPPKFYHQ--VVGGDSVQ--FRGKTLADYVAW 584 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs-----~~~fi~id~s~~~~e~~~~s~L~p~--gy~G~~~g--~rgk~~l~~L~e 584 (884)
.++++||+|+|||.+++.+++.+... ..+++.+++..... ...+... ...+.... .......+.+..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRT----PRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSS----HHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCC----HHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 79999999999999999999987432 56777787774221 0111100 00011100 001123466777
Q ss_pred HHHhCCCeEEEEcccccc-CHHHHHHHHHHHh
Q 002758 585 ELLKKPLSVVYLENVDKA-DVHVQNSLSKAIQ 615 (884)
Q Consensus 585 al~~~p~~VIlLDEIEKa-~~~vq~~Llq~le 615 (884)
.+.+....+|+|||+|.+ +..+.+.|..+++
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN 113 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh
Confidence 777776679999999999 9999999988877
No 230
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.68 E-value=2.7e-05 Score=79.84 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=64.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
+++|+||+|+|||+||.+|+..+...+.++..+++...-. .+ ... +..+ ....+...+.+. .+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~------~l-~~~---~~~~-----~~~~~~~~l~~~--dl 111 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD------EL-KQS---RSDG-----SYEELLKRLKRV--DL 111 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH------HH-HCC---HCCT-----THCHHHHHHHTS--SC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec------cc-ccc---cccc-----chhhhcCccccc--cE
Confidence 7999999999999999999998887777777777652100 00 000 0001 113445555544 68
Q ss_pred EEEcccccc--CHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCcc
Q 002758 594 VYLENVDKA--DVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643 (884)
Q Consensus 594 IlLDEIEKa--~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~ 643 (884)
++|||+... +....+.|+++|+... . +.. .|+|||...+
T Consensus 112 LilDDlG~~~~~~~~~~~l~~ii~~R~-~---------~~~-tIiTSN~~~~ 152 (178)
T PF01695_consen 112 LILDDLGYEPLSEWEAELLFEIIDERY-E---------RKP-TIITSNLSPS 152 (178)
T ss_dssp EEEETCTSS---HHHHHCTHHHHHHHH-H---------T-E-EEEEESS-HH
T ss_pred ecccccceeeecccccccchhhhhHhh-c---------ccC-eEeeCCCchh
Confidence 999999864 5667888899888642 1 122 5669997443
No 231
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00013 Score=78.87 Aligned_cols=106 Identities=13% Similarity=-0.053 Sum_probs=69.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC------CCCCCCCCCCc--cccccccccccccccchHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP------QDGEMNNPPKF--YHQVVGGDSVQFRGKTLADYVAWE 585 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~------~~~e~~~~s~L--~p~gy~G~~~g~rgk~~l~~L~ea 585 (884)
.+||.||.|+||..+|.++|+.++.....- .|.. ... ..+++-. .|.+ .-.+...+..+.+.
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~~---~Cg~C~sC~~i~~-~~HPDl~~i~p~~------~~I~id~ir~l~~~ 78 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKANG---FCKTCESCLKILN-GKYNDFYLIFDQK------NPIKKEDALSIINK 78 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHhc-CCCCCEEEecCCc------ccCCHHHHHHHHHH
Confidence 599999999999999999999997543210 1221 110 1111111 1111 11222233455555
Q ss_pred HHh-----CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 586 LLK-----KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 586 l~~-----~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
+.. ..+.|++|+++|+|+....|+|++.+|+-- .+++||++|+-
T Consensus 79 l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp-----------~~t~fiLit~~ 127 (261)
T PRK05818 79 LNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPP-----------KNTYGIFTTRN 127 (261)
T ss_pred HccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCC-----------CCeEEEEEECC
Confidence 443 346899999999999999999999999842 47888888874
No 232
>PRK08181 transposase; Validated
Probab=97.63 E-value=7.8e-05 Score=81.35 Aligned_cols=102 Identities=13% Similarity=0.062 Sum_probs=63.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
.++|+||+|+|||+||.+|+..+...+..++.+.+...-. .+. .....+ ....+...+.+ ..+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~------~l~----~a~~~~-----~~~~~l~~l~~--~dL 170 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ------KLQ----VARREL-----QLESAIAKLDK--FDL 170 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH------HHH----HHHhCC-----cHHHHHHHHhc--CCE
Confidence 6999999999999999999998876665666555442100 000 000000 01223333333 369
Q ss_pred EEEcccccc--CHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCcc
Q 002758 594 VYLENVDKA--DVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643 (884)
Q Consensus 594 IlLDEIEKa--~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~ 643 (884)
++|||++.. +...+..|+++|+.- ... . -+|+|||....
T Consensus 171 LIIDDlg~~~~~~~~~~~Lf~lin~R-~~~---------~-s~IiTSN~~~~ 211 (269)
T PRK08181 171 LILDDLAYVTKDQAETSVLFELISAR-YER---------R-SILITANQPFG 211 (269)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHH-HhC---------C-CEEEEcCCCHH
Confidence 999999865 456678899999842 111 1 17788997544
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00015 Score=78.54 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=65.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
.++|+||+|+|||+||-||+..+...+.+++.+.....-. .|- . .+..+ +.-..|...+.. ..|
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~------~Lk-~---~~~~~----~~~~~l~~~l~~--~dl 170 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS------KLK-A---AFDEG----RLEEKLLRELKK--VDL 170 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH------HHH-H---HHhcC----chHHHHHHHhhc--CCE
Confidence 5999999999999999999999985556666666552100 000 0 00111 111344444444 469
Q ss_pred EEEccccc--cCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCcc
Q 002758 594 VYLENVDK--ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643 (884)
Q Consensus 594 IlLDEIEK--a~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~ 643 (884)
++|||+.. .+....+.|+++|..-... ... |+|||.-.+
T Consensus 171 LIiDDlG~~~~~~~~~~~~~q~I~~r~~~----------~~~-~~tsN~~~~ 211 (254)
T COG1484 171 LIIDDIGYEPFSQEEADLLFQLISRRYES----------RSL-IITSNLSFG 211 (254)
T ss_pred EEEecccCccCCHHHHHHHHHHHHHHHhh----------ccc-eeecCCChH
Confidence 99999986 6677788888888754322 123 889997433
No 234
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00027 Score=81.00 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=59.2
Q ss_pred cCccchHHHHHHHHHHHHH------hcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCC
Q 002758 479 KIDWQDEAISVISQTIAQR------RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQD 552 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~------rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~ 552 (884)
-+.|.+.+...+..++.-. ..|++.+-+ -+|+.||+|+|||.|++|+|-.. ...|..|..+.
T Consensus 154 di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~r-------glLLfGPpgtGKtmL~~aiAsE~---~atff~iSass-- 221 (428)
T KOG0740|consen 154 DIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVR-------GLLLFGPPGTGKTMLAKAIATES---GATFFNISASS-- 221 (428)
T ss_pred CCcchhhHHHHhhhhhhhcccchHhhhccccccc-------hhheecCCCCchHHHHHHHHhhh---cceEeeccHHH--
Confidence 3667777777777666542 223332211 59999999999999999999876 33333333221
Q ss_pred CCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccc
Q 002758 553 GEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDK 601 (884)
Q Consensus 553 ~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEK 601 (884)
|. ..|+|..+. .+..+..-.+....+|||+||||+
T Consensus 222 --------Lt-sK~~Ge~eK-----~vralf~vAr~~qPsvifidEids 256 (428)
T KOG0740|consen 222 --------LT-SKYVGESEK-----LVRALFKVARSLQPSVIFIDEIDS 256 (428)
T ss_pred --------hh-hhccChHHH-----HHHHHHHHHHhcCCeEEEechhHH
Confidence 11 134444332 223444444556679999999985
No 235
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.57 E-value=0.0074 Score=64.31 Aligned_cols=120 Identities=14% Similarity=0.092 Sum_probs=85.6
Q ss_pred CccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCC
Q 002758 480 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 559 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s 559 (884)
++|-+...+.+.+.-.+...|.. .-++||+|.-|+||+.+.+|+-..+....-.+|.|+=...
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~p---------ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl-------- 124 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGLP---------ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL-------- 124 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCCc---------ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH--------
Confidence 46766666777777777666542 1279999999999999999999998877777777763311
Q ss_pred CccccccccccccccccchHHHHHHHHHhCCCe-EEEEccccc-cCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEe
Q 002758 560 KFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS-VVYLENVDK-ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTA 637 (884)
Q Consensus 560 ~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~-VIlLDEIEK-a~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlT 637 (884)
..+..|.+.++..|.. |||+|+.-- -+......|+.+||.|.-.. -.|++|..|
T Consensus 125 -----------------~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~r-------P~NVl~YAT 180 (287)
T COG2607 125 -----------------ATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGR-------PANVLFYAT 180 (287)
T ss_pred -----------------hhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccC-------CCeEEEEEe
Confidence 0135778888887765 677888653 34456778888888654222 258999999
Q ss_pred cCC
Q 002758 638 SSF 640 (884)
Q Consensus 638 SN~ 640 (884)
||.
T Consensus 181 SNR 183 (287)
T COG2607 181 SNR 183 (287)
T ss_pred cCC
Confidence 995
No 236
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.53 E-value=0.00038 Score=74.44 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=63.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEE
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVV 594 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VI 594 (884)
-.+.||+|+|||++.+.||+.+ +..++.++|+...+ . ....+.+.+.... +..+
T Consensus 35 ~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~-----------------~----~~l~ril~G~~~~--GaW~ 88 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMD-----------------Y----QSLSRILKGLAQS--GAWL 88 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS------------------H----HHHHHHHHHHHHH--T-EE
T ss_pred CCCcCCCCCCchhHHHHHHHHh---CCeEEEeccccccc-----------------H----HHHHHHHHHHhhc--Cchh
Confidence 5689999999999999999988 67889999985321 0 0111333444443 5899
Q ss_pred EEccccccCHHHHHHHHHHHh-------CC--eeeCCCCeEeecCc-eEEEEecCCC
Q 002758 595 YLENVDKADVHVQNSLSKAIQ-------TG--KLPDSYGREVSVSN-AIFVTASSFV 641 (884)
Q Consensus 595 lLDEIEKa~~~vq~~Llq~le-------~G--~l~ds~Gr~V~~~n-aI~IlTSN~g 641 (884)
.|||+++++.+++..+.+.|. .+ ++.. .|+++.+.. +-|.+|.|.+
T Consensus 89 cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT~np~ 144 (231)
T PF12774_consen 89 CFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFITMNPG 144 (231)
T ss_dssp EEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEEE-B-
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEeeccc
Confidence 999999999988777765553 33 3332 467777764 3355567754
No 237
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.47 E-value=0.00034 Score=65.57 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=58.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCC-----cceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhC
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGK-----ENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKK 589 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~-----~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~ 589 (884)
+.|+||+|+|||++|+.||+.+.... ..++..... +.......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~------------------------------~~~w~gY~-- 48 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPG------------------------------DKFWDGYQ-- 48 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCc------------------------------cchhhccC--
Confidence 46899999999999999998885321 111111100 01111111
Q ss_pred CCeEEEEccccccCHH----HHHHHHHHHhCCeeeCCC----CeEeecCceEEEEecCC
Q 002758 590 PLSVVYLENVDKADVH----VQNSLSKAIQTGKLPDSY----GREVSVSNAIFVTASSF 640 (884)
Q Consensus 590 p~~VIlLDEIEKa~~~----vq~~Llq~le~G~l~ds~----Gr~V~~~naI~IlTSN~ 640 (884)
...|+++||+...... ....|++++..-.+.-.- .+...+.--+||+|||.
T Consensus 49 ~q~vvi~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 49 GQPVVIIDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred CCcEEEEeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 1368999999987754 678889999887665421 11234444678888883
No 238
>PRK06921 hypothetical protein; Provisional
Probab=97.46 E-value=0.00033 Score=76.41 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=60.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCC-CcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs-~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
+++|+|++|+|||+||.+||..+... +..++.+.....-. .+ ...|. ........+.. ..
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~------~l--------~~~~~---~~~~~~~~~~~--~d 179 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG------DL--------KDDFD---LLEAKLNRMKK--VE 179 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH------HH--------HHHHH---HHHHHHHHhcC--CC
Confidence 79999999999999999999998754 45555555331000 00 00000 00112222322 46
Q ss_pred EEEEccccc-------cCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCccc
Q 002758 593 VVYLENVDK-------ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 644 (884)
Q Consensus 593 VIlLDEIEK-------a~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~~ 644 (884)
||+|||++. +..-.+..|+.++..-... + .-+|+|||...+.
T Consensus 180 lLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~---~-------k~tIitsn~~~~e 228 (266)
T PRK06921 180 VLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLN---H-------KPILISSELTIDE 228 (266)
T ss_pred EEEEeccccccCCCccCCHHHHHHHHHHHHHHHHC---C-------CCEEEECCCCHHH
Confidence 999999943 4555667888888753211 1 1167899975543
No 239
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.45 E-value=0.00087 Score=79.51 Aligned_cols=136 Identities=11% Similarity=0.101 Sum_probs=79.9
Q ss_pred HHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCC--CCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEe
Q 002758 469 WKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDH--HGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICA 546 (884)
Q Consensus 469 lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~--~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~i 546 (884)
.+.|.+.+.-.|.|.++..+.|.-.+.-. -.+. ....-+.++++||+|-||+||+.|.+.+++++-.. ++.
T Consensus 420 y~lLa~SiAPsIye~edvKkglLLqLfGG---t~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg----~yT 492 (804)
T KOG0478|consen 420 YELLARSIAPSIYELEDVKKGLLLQLFGG---TRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG----VYT 492 (804)
T ss_pred HHHHHHhhchhhhcccchhhhHHHHHhcC---CcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc----eee
Confidence 44556666778899988887765554432 2211 11123568999999999999999999999887321 111
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeC
Q 002758 547 DLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 547 d~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~d 621 (884)
.... ....-| ..|+-.+.. .+..+ .=++|+--.-.+|..|||+|||....+..|.++||...+..
T Consensus 493 SGkG-----sSavGL--TayVtrd~d--tkqlV-LesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSI 557 (804)
T KOG0478|consen 493 SGKG-----SSAVGL--TAYVTKDPD--TRQLV-LESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSI 557 (804)
T ss_pred cCCc-----cchhcc--eeeEEecCc--cceee-eecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhH
Confidence 1100 000000 011111111 00000 00123333346899999999999999999999999865543
No 240
>PRK09183 transposase/IS protein; Provisional
Probab=97.44 E-value=0.00015 Score=78.80 Aligned_cols=103 Identities=11% Similarity=0.017 Sum_probs=60.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccc-cccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVG-GDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~-G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
+++|+||+|+|||+||.+|+..+...+..+..+++...-. .+. ....+ . +..+..... ....
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~-----------~l~~a~~~~----~-~~~~~~~~~-~~~d 166 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL-----------QLSTAQRQG----R-YKTTLQRGV-MAPR 166 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH-----------HHHHHHHCC----c-HHHHHHHHh-cCCC
Confidence 6899999999999999999887654444554444331100 000 00000 0 111111111 2346
Q ss_pred EEEEccccc--cCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCccc
Q 002758 593 VVYLENVDK--ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 644 (884)
Q Consensus 593 VIlLDEIEK--a~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~~ 644 (884)
+++|||++. .+...++.|+++++... . . .. +|+|||...+.
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~-~--~-------~s-~iiTsn~~~~~ 209 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRY-E--K-------GS-MILTSNLPFGQ 209 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHH-h--c-------Cc-EEEecCCCHHH
Confidence 999999986 55667778999997531 1 1 12 67899985543
No 241
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.41 E-value=6.1e-05 Score=84.56 Aligned_cols=159 Identities=12% Similarity=0.118 Sum_probs=84.1
Q ss_pred HhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEe
Q 002758 467 SNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICA 546 (884)
Q Consensus 467 e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~i 546 (884)
.-+..|.+.+--.|+|.+.+...|.-.+...... ..+.+..-+.++++||+|.||+||+.|.+.+++.. ..-+..
T Consensus 13 ~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~-~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~----pr~v~~ 87 (331)
T PF00493_consen 13 NIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEK-NDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA----PRSVYT 87 (331)
T ss_dssp THHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SC-CCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-----SSEEEE
T ss_pred cHHHHHHHHhCCcCcCcHHHHHHHHHHHHhcccc-ccccccccccccceeeccchhhhHHHHHHHHHhhC----CceEEE
Confidence 3466777888889999887766655443322110 01111113467899999999999999988776544 222333
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCC-e
Q 002758 547 DLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG-R 625 (884)
Q Consensus 547 d~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~G-r 625 (884)
....... ..|+ ..+..++ ..+...+ -++++-..-.+|++|||+||++...+..|.++||.|.++...+ -
T Consensus 88 ~g~~~s~-----~gLt--a~~~~d~-~~~~~~l--eaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi 157 (331)
T PF00493_consen 88 SGKGSSA-----AGLT--ASVSRDP-VTGEWVL--EAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGI 157 (331)
T ss_dssp ECCGSTC-----CCCC--EEECCCG-GTSSECE--EE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSS
T ss_pred CCCCccc-----CCcc--ceecccc-ccceeEE--eCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhh
Confidence 3321110 1111 0000000 0011000 0133333456899999999999999999999999999987653 2
Q ss_pred Eeec-CceEEEEecCC
Q 002758 626 EVSV-SNAIFVTASSF 640 (884)
Q Consensus 626 ~V~~-~naI~IlTSN~ 640 (884)
...+ .++-|++++|.
T Consensus 158 ~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 158 VTTLNARCSVLAAANP 173 (331)
T ss_dssp EEEEE---EEEEEE--
T ss_pred cccccchhhhHHHHhh
Confidence 2222 24558888886
No 242
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00052 Score=83.76 Aligned_cols=116 Identities=21% Similarity=0.236 Sum_probs=81.8
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCC-------CcceEEeccCC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG-------KENFICADLCP 550 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs-------~~~fi~id~s~ 550 (884)
.-|+|.++-|+.+...+.+... + .-+|+|++|||||.++.-||..+-.. +..++.+||+.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K--------N-----NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~ 236 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK--------N-----NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS 236 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC--------C-----CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH
Confidence 4589999888777766654321 1 35789999999999999999987642 45677888874
Q ss_pred CCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc---------CHHHHHHHHHHHhCCeee
Q 002758 551 QDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA---------DVHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 551 ~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa---------~~~vq~~Llq~le~G~l~ 620 (884)
.-. -..|.|.-+. -+..+...+.+.+.-|+|||||+.+ .-++-|.|+.+|..|.+.
T Consensus 237 LvA---------GakyRGeFEe-----Rlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~ 301 (786)
T COG0542 237 LVA---------GAKYRGEFEE-----RLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR 301 (786)
T ss_pred Hhc---------cccccCcHHH-----HHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE
Confidence 211 1133332221 2355667777777889999999852 256889999999999876
No 243
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.37 E-value=0.00058 Score=80.38 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=95.8
Q ss_pred hHhHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCC--CCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcce
Q 002758 466 LSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDH--HGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 543 (884)
Q Consensus 466 ~e~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~--~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~f 543 (884)
..-++.|...|.-.|+|++.+..-|.-.+.-. ..+. .+-.-++|+++++.|-||+||+.+.++.+..+- ..
T Consensus 333 ~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGG---v~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsP---R~- 405 (764)
T KOG0480|consen 333 ENLYKNLVNSLFPSIYGHELVKAGILLSLFGG---VHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSP---RS- 405 (764)
T ss_pred chHHHHHHHhhCccccchHHHHhhHHHHHhCC---ccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCC---cc-
Confidence 33456777788889999998887766555432 2221 222346799999999999999999998876542 11
Q ss_pred EEeccCCCCCCCCCCCCcccccccccccc--ccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeC
Q 002758 544 ICADLCPQDGEMNNPPKFYHQVVGGDSVQ--FRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 544 i~id~s~~~~e~~~~s~L~p~gy~G~~~g--~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~d 621 (884)
|+....... ..-|+ ...+-..+. |. .=++|+--.-.+|.-|||+|||+..-|.+|..+||...+..
T Consensus 406 vYtsGkaSS-----aAGLT-aaVvkD~esgdf~------iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISI 473 (764)
T KOG0480|consen 406 VYTSGKASS-----AAGLT-AAVVKDEESGDFT------IEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISI 473 (764)
T ss_pred eEecCcccc-----cccce-EEEEecCCCCcee------eecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehh
Confidence 222221110 11111 000011111 10 01233433446899999999999999999999999998877
Q ss_pred CC-CeEeecC-ceEEEEecCCCcc
Q 002758 622 SY-GREVSVS-NAIFVTASSFVED 643 (884)
Q Consensus 622 s~-Gr~V~~~-naI~IlTSN~g~~ 643 (884)
.+ |-...+. .+=||+++|.-.+
T Consensus 474 aKAGv~aTLnARtSIlAAANPv~G 497 (764)
T KOG0480|consen 474 AKAGVVATLNARTSILAAANPVGG 497 (764)
T ss_pred eecceEEeecchhhhhhhcCCcCC
Confidence 54 3322221 2336666775443
No 244
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0021 Score=71.37 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=63.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCC-CccccccccccccccccchHHHHHHHHHh----
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP-KFYHQVVGGDSVQFRGKTLADYVAWELLK---- 588 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s-~L~p~gy~G~~~g~rgk~~l~~L~eal~~---- 588 (884)
.+||+|+.|.||+.+|+++|+.++..... ++... .+..+ .++++ .| +..+...+..+.+.+..
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~----~~~~~---~~p~n~~~~d~--~g---~~i~vd~Ir~l~~~~~~~~~~ 87 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQIT----NLNEQ---ELPANIILFDI--FD---KDLSKSEFLSAINKLYFSSFV 87 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCC----CCCCC---CCCcceEEecc--CC---CcCCHHHHHHHHHHhccCCcc
Confidence 79999999999999999999998542210 01100 00000 00000 01 10111112233333322
Q ss_pred -CCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecC
Q 002758 589 -KPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASS 639 (884)
Q Consensus 589 -~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN 639 (884)
.++.||+||++|++....++.|++.||+-- .+++||++|+
T Consensus 88 ~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp-----------~~t~~il~~~ 128 (299)
T PRK07132 88 QSQKKILIIKNIEKTSNSLLNALLKTIEEPP-----------KDTYFLLTTK 128 (299)
T ss_pred cCCceEEEEecccccCHHHHHHHHHHhhCCC-----------CCeEEEEEeC
Confidence 357899999999999999999999999731 3678888776
No 245
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.32 E-value=0.00062 Score=81.32 Aligned_cols=77 Identities=12% Similarity=0.209 Sum_probs=57.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHh-----
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK----- 588 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~----- 588 (884)
.+||+||+|.|||+||+.+|+.- +.+++.|+.+..-. + ..+...+..++..
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt--------------~-------~~v~~kI~~avq~~s~l~ 383 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERT--------------A-------PMVKEKIENAVQNHSVLD 383 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc---CceEEEeccccccc--------------H-------HHHHHHHHHHHhhccccc
Confidence 79999999999999999999986 67788888773110 0 1122455555543
Q ss_pred ---CCCeEEEEccccccCHHHHHHHHHHHh
Q 002758 589 ---KPLSVVYLENVDKADVHVQNSLSKAIQ 615 (884)
Q Consensus 589 ---~p~~VIlLDEIEKa~~~vq~~Llq~le 615 (884)
+| .-+++||||-+++.+.+.|+.++.
T Consensus 384 adsrP-~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 384 ADSRP-VCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred cCCCc-ceEEEecccCCcHHHHHHHHHHHH
Confidence 33 346799999999999999999987
No 246
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.31 E-value=0.0099 Score=70.71 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=37.3
Q ss_pred CccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHc
Q 002758 480 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
+.-+..-++.|..++.....+... .-.+||.||+|||||++++.||+.+.
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~--------~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSP--------KRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCC--------cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 344566678888888766543211 11799999999999999999999983
No 247
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.20 E-value=0.0014 Score=83.10 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=85.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcccccccccccc-ccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~~ 592 (884)
.+++.|+.|+||+.|...|+..+ +..+|.|++++..+ +.-|+ --|....+| | .-..+.|++|+... .
T Consensus 151 pI~l~g~~gsgksfLisel~~~~---G~~iV~Ihl~e~TD----ak~Li-GtYts~KpG~f--Ew~~GvL~~avv~G--~ 218 (4600)
T COG5271 151 PIYLEGGRGSGKSFLISELCDEG---GQRIVEIHLREITD----AKVLI-GTYTSPKPGDF--EWMKGVLIEAVVSG--D 218 (4600)
T ss_pred ceEEecCccccHHHHHHHHHHHh---CceEEEEecccccC----chhee-eeccCCCCCce--eeccchhhhhhhcC--c
Confidence 59999999999999999999987 47899999996543 23333 011111111 1 00125788888764 7
Q ss_pred EEEEccccccCHHHHHHHHHHHhCCeeeC-CCCeEeecCceE-EEEec
Q 002758 593 VVYLENVDKADVHVQNSLSKAIQTGKLPD-SYGREVSVSNAI-FVTAS 638 (884)
Q Consensus 593 VIlLDEIEKa~~~vq~~Llq~le~G~l~d-s~Gr~V~~~naI-~IlTS 638 (884)
.|+|.+||||+.+++..|+.+++..++.. +.|.+|...+.+ +++||
T Consensus 219 WILf~~Idkap~~vLs~Ll~llekR~L~ipsrGEtV~A~~~Fqif~Ts 266 (4600)
T COG5271 219 WILFKRIDKAPHGVLSYLLTLLEKRRLLIPSRGETVLAHDNFQIFFTS 266 (4600)
T ss_pred EEEEeecccCchhHHHHHHHHHHhhhhccCCCCceEEecCCEEEEEec
Confidence 99999999999999999999999999988 789999988876 44443
No 248
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.12 E-value=0.00041 Score=76.19 Aligned_cols=104 Identities=19% Similarity=0.253 Sum_probs=65.6
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCC---cceEEeccCCCCCCC
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK---ENFICADLCPQDGEM 555 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~---~~fi~id~s~~~~e~ 555 (884)
.|++|.+.+..+.+. .+... .+ ++||+||+|+|||....+.|..+++.. ..+..++.+...
T Consensus 42 dv~~~~ei~st~~~~-----~~~~~----lP----h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r--- 105 (360)
T KOG0990|consen 42 IVIKQEPIWSTENRY-----SGMPG----LP----HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR--- 105 (360)
T ss_pred hHhcCCchhhHHHHh-----ccCCC----CC----cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc---
Confidence 468888777665554 22211 12 799999999999999999999998731 112223332111
Q ss_pred CCCCCccccccccccccccccchHHHHH-HHHH--------hCCCeEEEEccccccCHHHHHHHHHHHhC
Q 002758 556 NNPPKFYHQVVGGDSVQFRGKTLADYVA-WELL--------KKPLSVVYLENVDKADVHVQNSLSKAIQT 616 (884)
Q Consensus 556 ~~~s~L~p~gy~G~~~g~rgk~~l~~L~-eal~--------~~p~~VIlLDEIEKa~~~vq~~Llq~le~ 616 (884)
|-+. ...++. .+.. ...+..|+|||.|.|...+|+.|.+.+++
T Consensus 106 ------------gid~------vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek 157 (360)
T KOG0990|consen 106 ------------GIDP------VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEK 157 (360)
T ss_pred ------------CCcc------hHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHH
Confidence 0000 001111 1111 12577899999999999999999998775
No 249
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.12 E-value=0.00043 Score=81.08 Aligned_cols=153 Identities=11% Similarity=0.055 Sum_probs=91.2
Q ss_pred hhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCC
Q 002758 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEM 555 (884)
Q Consensus 476 L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~ 555 (884)
+--.|+|+.++..+|+-++.......- ..+..-++++++||+|-||+||+.+.+-.++.-. ..++.-..+.
T Consensus 447 iaPsIyGh~~VK~AvAlaLfGGv~kn~-~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~---RAV~tTGqGA----- 517 (854)
T KOG0477|consen 447 IAPSIYGHEDVKRAVALALFGGVPKNP-GGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSP---RAVFTTGQGA----- 517 (854)
T ss_pred hCchhhchHHHHHHHHHHHhcCCccCC-CCCceeccceeEEEecCCCccHHHHHHHHHhcCc---ceeEeccCCc-----
Confidence 345689999999888888775432111 1122335799999999999999999998887642 2222111110
Q ss_pred CCCCCccccccccccccc-cccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCC-CeEeec-Cce
Q 002758 556 NNPPKFYHQVVGGDSVQF-RGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY-GREVSV-SNA 632 (884)
Q Consensus 556 ~~~s~L~p~gy~G~~~g~-rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~-Gr~V~~-~na 632 (884)
... |+..+.... .++.. ..=++|+--.-.+|.+|||+|||..+-...+-.+||...+..++ |-..++ ..+
T Consensus 518 -Sav-----GLTa~v~KdPvtrEW-TLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArc 590 (854)
T KOG0477|consen 518 -SAV-----GLTAYVRKDPVTREW-TLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARC 590 (854)
T ss_pred -ccc-----ceeEEEeeCCcccee-eeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhh
Confidence 000 111110000 00000 00112333334689999999999999999999999998877654 311111 245
Q ss_pred EEEEecCCCccc
Q 002758 633 IFVTASSFVEDA 644 (884)
Q Consensus 633 I~IlTSN~g~~~ 644 (884)
.+|+++|...+.
T Consensus 591 tvIAAanPigGR 602 (854)
T KOG0477|consen 591 TVIAAANPIGGR 602 (854)
T ss_pred hhheecCCCCCc
Confidence 689999975443
No 250
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.012 Score=70.59 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=48.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCc-ceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKE-NFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~-~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
.+|+.||.|+|||.|+++|+..++.... .+..++|+.... .++ +. .-+.....+++++...| +
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~-----~~~---------e~-iQk~l~~vfse~~~~~P-S 496 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDG-----SSL---------EK-IQKFLNNVFSEALWYAP-S 496 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccc-----hhH---------HH-HHHHHHHHHHHHHhhCC-c
Confidence 7999999999999999999999874432 344577774322 110 00 01222345677777665 8
Q ss_pred EEEEccccc
Q 002758 593 VVYLENVDK 601 (884)
Q Consensus 593 VIlLDEIEK 601 (884)
||+||++|-
T Consensus 497 iIvLDdld~ 505 (952)
T KOG0735|consen 497 IIVLDDLDC 505 (952)
T ss_pred EEEEcchhh
Confidence 999999884
No 251
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.05 E-value=0.00082 Score=79.58 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=48.3
Q ss_pred cCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 479 KIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 479 ~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
.++|+++++..|...+..+..|+..++ ..++|+||+|+|||+||+.||+.+-.- +++.+.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~-------~IL~LvGPpG~GKSsLa~~la~~le~~--~~Y~~k 136 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKK-------QILYLLGPVGGGKSSLAERLKSLMERV--PIYVLK 136 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCC-------ceEEEecCCCCCchHHHHHHHHHHHhC--cceeec
Confidence 479999999999999988877775432 279999999999999999999987422 455553
No 252
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0018 Score=76.84 Aligned_cols=102 Identities=17% Similarity=0.109 Sum_probs=64.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCC
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 591 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~ 591 (884)
+.-+|++||+|+|||.+++++|+.- ...++.++..+.-. .|.|..+. .....+.++.+....
T Consensus 218 prg~Ll~gppg~Gkt~l~~aVa~e~---~a~~~~i~~peli~-----------k~~gEte~----~LR~~f~~a~k~~~p 279 (693)
T KOG0730|consen 218 PRGLLLYGPPGTGKTFLVRAVANEY---GAFLFLINGPELIS-----------KFPGETES----NLRKAFAEALKFQVP 279 (693)
T ss_pred CCCccccCCCCCChHHHHHHHHHHh---CceeEecccHHHHH-----------hcccchHH----HHHHHHHHHhccCCC
Confidence 3469999999999999999999976 35566666552110 12222221 112344555555548
Q ss_pred eEEEEccccccCH----------HHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 592 SVVYLENVDKADV----------HVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 592 ~VIlLDEIEKa~~----------~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
++|||||+|-+-| .+-..|+.+++.-. .-.++|+|.++|.
T Consensus 280 sii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~---------~~~~vivl~atnr 329 (693)
T KOG0730|consen 280 SIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK---------PDAKVIVLAATNR 329 (693)
T ss_pred eeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc---------CcCcEEEEEecCC
Confidence 9999999997653 34555666665321 1246788888875
No 253
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.94 E-value=0.0056 Score=70.42 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=60.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHH-HcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEI-IYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~-L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
++++.||+|||||++|.+|+.. .+-++ .|+ ....|+ .. ......+.+ ....
T Consensus 211 Nli~lGp~GTGKThla~~l~~~~a~~sG-~f~------------T~a~Lf-----~~--------L~~~~lg~v--~~~D 262 (449)
T TIGR02688 211 NLIELGPKGTGKSYIYNNLSPYVILISG-GTI------------TVAKLF-----YN--------ISTRQIGLV--GRWD 262 (449)
T ss_pred cEEEECCCCCCHHHHHHHHhHHHHHHcC-CcC------------cHHHHH-----HH--------HHHHHHhhh--ccCC
Confidence 6999999999999999998876 32221 111 011111 00 000111111 2246
Q ss_pred EEEEccccccC----HHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCC
Q 002758 593 VVYLENVDKAD----VHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFV 641 (884)
Q Consensus 593 VIlLDEIEKa~----~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g 641 (884)
+|+||||..++ .+..+.|+..|++|.|+. |.+.-..++=+||.-|.-
T Consensus 263 lLI~DEvgylp~~~~~~~v~imK~yMesg~fsR--G~~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 263 VVAFDEVATLKFAKPKELIGILKNYMESGSFTR--GDETKSSDASFVFLGNVP 313 (449)
T ss_pred EEEEEcCCCCcCCchHHHHHHHHHHHHhCceec--cceeeeeeeEEEEEcccC
Confidence 89999999743 457789999999999986 433333566677777763
No 254
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.93 E-value=0.0041 Score=68.11 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=67.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
.+||+||+|+|||.+++.+-+.+.........+.++..... .....++...+ +.-+|..+ .. ..+...|
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts-~~~q~~ie~~l----~k~~~~~~-----gP-~~~k~lv 103 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTS-NQLQKIIESKL----EKRRGRVY-----GP-PGGKKLV 103 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHH-HHHHHCCCTTE----CECTTEEE-----EE-ESSSEEE
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCH-HHHHHHHhhcE----EcCCCCCC-----CC-CCCcEEE
Confidence 69999999999999998765554332223445666643220 00000110000 00011100 00 1223569
Q ss_pred EEEccccccCH------HHHHHHHHHHhCCeeeCCCC-eEeecCceEEEEecCCC
Q 002758 594 VYLENVDKADV------HVQNSLSKAIQTGKLPDSYG-REVSVSNAIFVTASSFV 641 (884)
Q Consensus 594 IlLDEIEKa~~------~vq~~Llq~le~G~l~ds~G-r~V~~~naI~IlTSN~g 641 (884)
+||||+.-..+ .....|.|.|+.|-+.|... .-..+.++.||.+++.+
T Consensus 104 ~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~ 158 (272)
T PF12775_consen 104 LFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPT 158 (272)
T ss_dssp EEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESST
T ss_pred EEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCC
Confidence 99999985442 36789999999988887543 44677888899888764
No 255
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=0.0076 Score=69.36 Aligned_cols=126 Identities=6% Similarity=0.046 Sum_probs=75.7
Q ss_pred hccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCc--ceEEeccCCCCCC
Q 002758 477 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKE--NFICADLCPQDGE 554 (884)
Q Consensus 477 ~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~--~fi~id~s~~~~e 554 (884)
...++|.+.-+..+...+..+..+. ....+.+.|-||+|||.+-..+-..+-.+.. ..++|+|....
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~---------t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~-- 217 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELN---------TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT-- 217 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcc---------cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc--
Confidence 4578888888888888888776532 2237999999999999987755444432222 34677776422
Q ss_pred CCCCCCcc---cc----ccccccccccccchHHHHHHHHHhCC-CeEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 555 MNNPPKFY---HQ----VVGGDSVQFRGKTLADYVAWELLKKP-LSVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 555 ~~~~s~L~---p~----gy~G~~~g~rgk~~l~~L~eal~~~p-~~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
....+| .. +.++...+ ..+...+.....+.. --|+++||+|.+...-|..|+.+++=-.
T Consensus 218 --~~~aiF~kI~~~~~q~~~s~~~~---~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~ 284 (529)
T KOG2227|consen 218 --EASAIFKKIFSSLLQDLVSPGTG---MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK 284 (529)
T ss_pred --chHHHHHHHHHHHHHHhcCCchh---HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc
Confidence 223333 11 11111111 223345555555443 4689999999888666666666666433
No 256
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.005 Score=71.50 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCe
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
..+||.||+|+|||.||-.+|.. +.-|||++=-. ...+|+.+.-.. .++..+.+..-+.|-+
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~---S~FPFvKiiSp--------------e~miG~sEsaKc-~~i~k~F~DAYkS~ls 600 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALS---SDFPFVKIISP--------------EDMIGLSESAKC-AHIKKIFEDAYKSPLS 600 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhh---cCCCeEEEeCh--------------HHccCccHHHHH-HHHHHHHHHhhcCcce
Confidence 47999999999999999999974 46788876322 233455443111 1223344444556889
Q ss_pred EEEEcccccc------CHHHHHHHHHHHh
Q 002758 593 VVYLENVDKA------DVHVQNSLSKAIQ 615 (884)
Q Consensus 593 VIlLDEIEKa------~~~vq~~Llq~le 615 (884)
||++|+||++ .|.+-|.++|+|-
T Consensus 601 iivvDdiErLiD~vpIGPRfSN~vlQaL~ 629 (744)
T KOG0741|consen 601 IIVVDDIERLLDYVPIGPRFSNLVLQALL 629 (744)
T ss_pred EEEEcchhhhhcccccCchhhHHHHHHHH
Confidence 9999999974 4666666666653
No 257
>PF05729 NACHT: NACHT domain
Probab=96.68 E-value=0.0056 Score=60.11 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=53.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCC------cceEEeccCCCCCCCC--CCCCccccccccccccccccchHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGK------ENFICADLCPQDGEMN--NPPKFYHQVVGGDSVQFRGKTLADYVAWE 585 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~------~~fi~id~s~~~~e~~--~~s~L~p~gy~G~~~g~rgk~~l~~L~ea 585 (884)
.+++.|++|+|||++++.++..+.... .-++.+.+........ ....++...+... .......+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~~~~~ 76 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEELLQEL 76 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHHHHHHH
Confidence 589999999999999999998775432 1223344443221000 0000110000000 00111223445
Q ss_pred HHhCCCeEEEEccccccCHHHH--------HHHHHHHhC
Q 002758 586 LLKKPLSVVYLENVDKADVHVQ--------NSLSKAIQT 616 (884)
Q Consensus 586 l~~~p~~VIlLDEIEKa~~~vq--------~~Llq~le~ 616 (884)
+...+..+|+||.+|.+..... ..|.+.+..
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~ 115 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ 115 (166)
T ss_pred HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh
Confidence 5567778999999999876433 355556654
No 258
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.67 E-value=0.013 Score=60.99 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=57.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCC-CcceEEeccC-CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 591 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs-~~~fi~id~s-~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~ 591 (884)
.+++.||+|+|||+++.+|+..+... ...++.+.-. ++.. .....++.+.-+|.. ..++.+.+..+++..|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~--~~~~~~i~q~~vg~~----~~~~~~~i~~aLr~~p- 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH--ESKRSLINQREVGLD----TLSFENALKAALRQDP- 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc--cCccceeeecccCCC----ccCHHHHHHHHhcCCc-
Confidence 69999999999999999998887532 2334444322 1100 000011111001111 1235567777888765
Q ss_pred eEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 592 SVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 592 ~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
.+|++||+- +++....++++..+|.
T Consensus 76 d~ii~gEir--d~e~~~~~l~~a~~G~ 100 (198)
T cd01131 76 DVILVGEMR--DLETIRLALTAAETGH 100 (198)
T ss_pred CEEEEcCCC--CHHHHHHHHHHHHcCC
Confidence 689999995 6677777778877663
No 259
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.61 E-value=0.0083 Score=58.37 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=29.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
++++||+|+|||+++..++..+-....+++.+++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 68999999999999999998886555667777665
No 260
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.0041 Score=61.74 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=57.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
.+|+.|-||+|||++|.+||+.. .|-.|+++.+-.+ + .-|.||++.| .-
T Consensus 9 NILvtGTPG~GKstl~~~lae~~-----~~~~i~isd~vkE----n----~l~~gyDE~y------------------~c 57 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKT-----GLEYIEISDLVKE----N----NLYEGYDEEY------------------KC 57 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHh-----CCceEehhhHHhh----h----cchhcccccc------------------cC
Confidence 59999999999999999999876 3556777743221 1 1234666653 23
Q ss_pred EEEccccccCHHHHHHHHHHHhC-CeeeCCCCeEe---ecCceEEEEecC
Q 002758 594 VYLENVDKADVHVQNSLSKAIQT-GKLPDSYGREV---SVSNAIFVTASS 639 (884)
Q Consensus 594 IlLDEIEKa~~~vq~~Llq~le~-G~l~ds~Gr~V---~~~naI~IlTSN 639 (884)
-+||| ..+.+.|-..|.. |.+.|-+|-.. -.-+.+||++|-
T Consensus 58 ~i~DE-----dkv~D~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~ 102 (176)
T KOG3347|consen 58 HILDE-----DKVLDELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTP 102 (176)
T ss_pred ccccH-----HHHHHHHHHHHhcCCcEEeecccCccchhheeEEEEEecC
Confidence 45776 4556666655544 56666555111 112577999885
No 261
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.43 E-value=0.0046 Score=67.07 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=47.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHH--HcCCCcceEEeccCCCCCCCCCCCCcc---ccccccccccc----cccchHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEI--IYGGKENFICADLCPQDGEMNNPPKFY---HQVVGGDSVQF----RGKTLADYVAW 584 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~--L~gs~~~fi~id~s~~~~e~~~~s~L~---p~gy~G~~~g~----rgk~~l~~L~e 584 (884)
++.++|+.|+|||+||+.+++. +-......+-++++.... ...++ -..+....... .-....+.+.+
T Consensus 21 ~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~----~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 21 VVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPS----LEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp EEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SC----CHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred EEEEEcCCcCCcceeeeecccccccccccccccccccccccc----cccccccccccccccccccccccccccccccchh
Confidence 8999999999999999999987 433334445566553211 11111 00000000000 00113356666
Q ss_pred HHHhCCCeEEEEccccccC
Q 002758 585 ELLKKPLSVVYLENVDKAD 603 (884)
Q Consensus 585 al~~~p~~VIlLDEIEKa~ 603 (884)
.+..+ ..+|+||+|+...
T Consensus 97 ~L~~~-~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 97 LLKDK-RCLLVLDDVWDEE 114 (287)
T ss_dssp HHCCT-SEEEEEEEE-SHH
T ss_pred hhccc-cceeeeeeecccc
Confidence 66666 7899999998655
No 262
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.40 E-value=0.017 Score=65.39 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=59.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCC-CcceEEeccC-CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 591 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs-~~~fi~id~s-~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~ 591 (884)
.+++.||+|+|||++.++|...+... ...++.+.-. ++.. .....++. -.+.++...++.+.+..+++..|
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~--~~~~~~i~----q~evg~~~~~~~~~l~~~lr~~p- 196 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH--RNKRSLIN----QREVGLDTLSFANALRAALREDP- 196 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc--cCccceEE----ccccCCCCcCHHHHHHHhhccCC-
Confidence 79999999999999999999877532 3445544322 1110 00011110 01112112345567777888765
Q ss_pred eEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 592 SVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 592 ~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
.+|++||+- +++.....+++..+|.
T Consensus 197 d~i~vgEir--d~~~~~~~l~aa~tGh 221 (343)
T TIGR01420 197 DVILIGEMR--DLETVELALTAAETGH 221 (343)
T ss_pred CEEEEeCCC--CHHHHHHHHHHHHcCC
Confidence 789999996 7777777778777663
No 263
>PRK04296 thymidine kinase; Provisional
Probab=96.33 E-value=0.02 Score=59.27 Aligned_cols=97 Identities=11% Similarity=-0.048 Sum_probs=50.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHH--HhCCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL--LKKPL 591 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal--~~~p~ 591 (884)
..+++||+|+|||++|..++..+-+....++.+.-+.... .. ...+. ...|....-........+...+ .....
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~-~~-~~~i~--~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDR-YG-EGKVV--SRIGLSREAIPVSSDTDIFELIEEEGEKI 79 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccc-cc-CCcEe--cCCCCcccceEeCChHHHHHHHHhhCCCC
Confidence 6889999999999999888887766666666553211100 00 01111 0001100000000112233333 23456
Q ss_pred eEEEEccccccCHHHHHHHHHHH
Q 002758 592 SVVYLENVDKADVHVQNSLSKAI 614 (884)
Q Consensus 592 ~VIlLDEIEKa~~~vq~~Llq~l 614 (884)
.||+|||+..++.+....|.+.+
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l 102 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVL 102 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHH
Confidence 79999999988776333344443
No 264
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.31 E-value=0.072 Score=58.43 Aligned_cols=76 Identities=7% Similarity=0.106 Sum_probs=55.9
Q ss_pred cChhHHhcccceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Q 002758 763 SWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRG 842 (884)
Q Consensus 763 ~f~~efl~rID~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~~~ 842 (884)
..+-+||+|+ -||.-.|++.+++++|+.....+. .+.++++|++.|..-+.. ..|+--+.-+-...
T Consensus 341 GiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EE---------dv~m~~~A~d~Lt~i~~~----tsLRYai~Lit~a~ 406 (454)
T KOG2680|consen 341 GIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEE---------DVEMNPDALDLLTKIGEA----TSLRYAIHLITAAS 406 (454)
T ss_pred CCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhh---------ccccCHHHHHHHHHhhhh----hhHHHHHHHHHHHH
Confidence 5677899997 589999999999999998876543 577999999999876432 34555555555555
Q ss_pred HHHHHHhcCC
Q 002758 843 FLDAQEKYNL 852 (884)
Q Consensus 843 L~~~~~~~~~ 852 (884)
+.-.+++++.
T Consensus 407 ~~~~krk~~~ 416 (454)
T KOG2680|consen 407 LVCLKRKGKV 416 (454)
T ss_pred HHHHHhcCce
Confidence 6655555543
No 265
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.036 Score=59.57 Aligned_cols=105 Identities=11% Similarity=0.077 Sum_probs=68.7
Q ss_pred EEEEEcCCC-CchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCc-ccccccc-ccccccccchHHHHHHHHHhC-
Q 002758 514 WFNFTGPDL-CGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKF-YHQVVGG-DSVQFRGKTLADYVAWELLKK- 589 (884)
Q Consensus 514 ~lLf~Gp~G-vGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L-~p~gy~G-~~~g~rgk~~l~~L~eal~~~- 589 (884)
.+||.|..+ .+|..++.-++..++... ++.. .+++-. +.|+-.+ ......+...++.+.+.+...
T Consensus 17 AYLfeG~n~~~~~~~~~~f~~~~l~~~~-----i~~~------~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p 85 (263)
T PRK06581 17 SWLIEAENIEQALKDLEKFIYIKLFKNS-----IPLE------NNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTS 85 (263)
T ss_pred eeeEeCCChhhHHHHHHHHHHHHHhccC-----cccC------CCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCc
Confidence 699999998 999999999999987542 1211 112211 1111100 001122233345566666544
Q ss_pred ---CCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 590 ---PLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 590 ---p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
++.|++|+++|++.....|+||+.||+.. .+++||++|+-
T Consensus 86 ~~g~~KViII~~ae~mt~~AANALLKtLEEPP-----------~~t~fILit~~ 128 (263)
T PRK06581 86 AISGYKVAIIYSAELMNLNAANSCLKILEDAP-----------KNSYIFLITSR 128 (263)
T ss_pred ccCCcEEEEEechHHhCHHHHHHHHHhhcCCC-----------CCeEEEEEeCC
Confidence 46899999999999999999999999842 36778886653
No 266
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.017 Score=58.21 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHcC
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIYG 538 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~g 538 (884)
..-+++.|+||+|||+++..||+.|-.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 457999999999999999999998853
No 267
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.25 E-value=0.011 Score=77.79 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=75.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcccccccc-ccccccccc-h-HHHHHHHHHhCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGG-DSVQFRGKT-L-ADYVAWELLKKP 590 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G-~~~g~rgk~-~-l~~L~eal~~~p 590 (884)
.+||.||+++|||.|++-||+.. ..++++|+--... + -++|.| |...--|.. + .+.+.+|+++.
T Consensus 442 pillqG~tssGKtsii~~la~~~---g~~~vrinnheht------d---~qeyig~y~~~~~g~l~freg~LV~Alr~G- 508 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARAT---GKNIVRINNHEHT------D---LQEYIGTYVADDNGDLVFREGVLVQALRNG- 508 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHh---ccCceehhccccc------h---HHHHHHhhhcCCCCCeeeehhHHHHHHHhC-
Confidence 59999999999999999999988 5667777643211 1 124444 211101111 1 25778888764
Q ss_pred CeEEEEccccccCHHHHHHHHHHHhC-CeeeCCCC-eEeecCc-eEEEEecCC
Q 002758 591 LSVVYLENVDKADVHVQNSLSKAIQT-GKLPDSYG-REVSVSN-AIFVTASSF 640 (884)
Q Consensus 591 ~~VIlLDEIEKa~~~vq~~Llq~le~-G~l~ds~G-r~V~~~n-aI~IlTSN~ 640 (884)
.++||||+.-|+.++++.|.+++++ .++....+ |.|...- -.+++|-|.
T Consensus 509 -~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~ 560 (1856)
T KOG1808|consen 509 -DWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNP 560 (1856)
T ss_pred -CEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccC
Confidence 7899999999999999999999998 45544444 4444432 234444443
No 268
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.24 E-value=0.15 Score=61.59 Aligned_cols=134 Identities=13% Similarity=0.163 Sum_probs=74.5
Q ss_pred hhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHc-----CCCcc--eEEecc
Q 002758 476 LTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY-----GGKEN--FICADL 548 (884)
Q Consensus 476 L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~-----gs~~~--fi~id~ 548 (884)
..+.+.+.+.-...|-..+.-... . +.. ...|.+.|-||+|||.+.+.+-+.|- +.-.. ++.||.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~---~-~~~----g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINg 465 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFIS---D-QGL----GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEING 465 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcC---C-CCC----ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcc
Confidence 457788888777777666655433 2 111 13799999999999999998887665 22233 444443
Q ss_pred CCCCCCCCCCCCccccccccccccccccchHHHHHHHHH----hCCCeEEEEccccccCHHHHHHHHHHHhCCeee
Q 002758 549 CPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL----KKPLSVVYLENVDKADVHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 549 s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~----~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ 620 (884)
-.... .......+-..+.|.... ....+..|..... +.+..||||||.|-+=..-|+.|..+++=-.+.
T Consensus 466 m~l~~-~~~~Y~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~ 538 (767)
T KOG1514|consen 466 LRLAS-PREIYEKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLK 538 (767)
T ss_pred eeecC-HHHHHHHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCC
Confidence 32211 000000000111222211 1111222222222 234579999999998888889998888854443
No 269
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.22 E-value=0.034 Score=60.69 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=59.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC-CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s-~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
.++|.||+|+|||++.+++...+......++.+.-. ++.- .....+ . +.. ..+.++.+.+..+++..| .
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~~q~---~-v~~---~~~~~~~~~l~~~lR~~P-D 151 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGINQV---Q-VNE---KAGLTFARGLRAILRQDP-D 151 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCceEE---E-eCC---cCCcCHHHHHHHHhccCC-C
Confidence 699999999999999999988775444556666433 1110 011110 0 000 112345567777887775 7
Q ss_pred EEEEccccccCHHHHHHHHHHHhCCe
Q 002758 593 VVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 593 VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
+|++.||.. ++....++++..+|.
T Consensus 152 ~i~vgEiR~--~e~a~~~~~aa~tGh 175 (264)
T cd01129 152 IIMVGEIRD--AETAEIAVQAALTGH 175 (264)
T ss_pred EEEeccCCC--HHHHHHHHHHHHcCC
Confidence 888999963 455667788888874
No 270
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.20 E-value=0.024 Score=72.79 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcccccccccccc-cccc-ch-HHHHHHHHHhC
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQ-FRGK-TL-ADYVAWELLKK 589 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g-~rgk-~~-l~~L~eal~~~ 589 (884)
..+|+.||+.+|||.|..-||+.. ...||+|+--+... + ++|.|.... --|+ .+ -+.|.+|+++.
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHTd-------l--qeYiGTyvTdd~G~lsFkEGvLVeAlR~G 956 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHTD-------L--QEYIGTYVTDDDGSLSFKEGVLVEALRRG 956 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHh---CccEEEecCcccch-------H--HHHhhceeecCCCceeeehhHHHHHHhcC
Confidence 369999999999999999999987 56799998553221 1 344433211 0011 11 26899999975
Q ss_pred CCeEEEEccccccCHHHHHHHHHHHhCCe-eeCCCCeEe--ecCceEEEEecCC
Q 002758 590 PLSVVYLENVDKADVHVQNSLSKAIQTGK-LPDSYGREV--SVSNAIFVTASSF 640 (884)
Q Consensus 590 p~~VIlLDEIEKa~~~vq~~Llq~le~G~-l~ds~Gr~V--~~~naI~IlTSN~ 640 (884)
-.|+|||..-|+.+|+.+|-+++++.| +....-.+| .-.+-.+.+|-|.
T Consensus 957 --yWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNp 1008 (4600)
T COG5271 957 --YWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNP 1008 (4600)
T ss_pred --cEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCC
Confidence 589999999999999999999998764 333333333 2345556677673
No 271
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.18 E-value=0.027 Score=58.99 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=65.4
Q ss_pred CCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHh
Q 002758 509 PRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588 (884)
Q Consensus 509 ~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~ 588 (884)
.|.++.++|.|+-|+|||+..+.|....|... +... .. + .....+..
T Consensus 49 ~k~d~~lvl~G~QG~GKStf~~~L~~~~~~d~-------~~~~------------------~~----k----d~~~~l~~ 95 (198)
T PF05272_consen 49 CKNDTVLVLVGKQGIGKSTFFRKLGPEYFSDS-------INDF------------------DD----K----DFLEQLQG 95 (198)
T ss_pred CcCceeeeEecCCcccHHHHHHHHhHHhccCc-------cccC------------------CC----c----HHHHHHHH
Confidence 35678999999999999999999976643221 0000 00 1 12233333
Q ss_pred CCCeEEEEccccccCHHHHHHHHHHHhCCee--eCCCCeE-eec-CceEEEEecCC
Q 002758 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGKL--PDSYGRE-VSV-SNAIFVTASSF 640 (884)
Q Consensus 589 ~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l--~ds~Gr~-V~~-~naI~IlTSN~ 640 (884)
+ -+|.|||++.+...-++.|+.+|..-.. +-..|+. ..+ +.++||.|||-
T Consensus 96 ~--~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~ 149 (198)
T PF05272_consen 96 K--WIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTND 149 (198)
T ss_pred h--HheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCC
Confidence 2 5899999999998888999999976543 3344532 333 56899999995
No 272
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.13 E-value=0.0067 Score=57.14 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+++.|++|+|||++|+.||+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987
No 273
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.09 E-value=0.012 Score=62.62 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=25.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 511 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 511 ~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
.+.++||+|++|+|||++|+.|+. ...++..|.+
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~-----~~~~~~~d~~ 44 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG-----KTLVLSFDMS 44 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC-----CCEEEecccc
Confidence 345899999999999999998862 2345556654
No 274
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.06 E-value=0.022 Score=59.33 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=52.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHH------
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL------ 587 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~------ 587 (884)
..++.||+|+|||++.+++++.+...+..++-+..+.... ..|- ...+....++...+.....
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa-----~~L~------~~~~~~a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAA-----KELR------EKTGIEAQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHH-----HHHH------HHHTS-EEEHHHHTTEECCEECCSS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHH-----HHHH------HhhCcchhhHHHHHhcCCccccccc
Confidence 6889999999999999999988876555555554431000 0000 0000000011000000000
Q ss_pred --hCCCeEEEEccccccCHHHHHHHHHHHhC
Q 002758 588 --KKPLSVVYLENVDKADVHVQNSLSKAIQT 616 (884)
Q Consensus 588 --~~p~~VIlLDEIEKa~~~vq~~Llq~le~ 616 (884)
..+..||++||+-.++......|++.+..
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh
Confidence 23357999999999999999999998886
No 275
>PRK14974 cell division protein FtsY; Provisional
Probab=96.06 E-value=0.061 Score=60.75 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=53.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcc-ccccccc--cccccccchHHHHHHHH--
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGGD--SVQFRGKTLADYVAWEL-- 586 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~-p~gy~G~--~~g~rgk~~l~~L~eal-- 586 (884)
+..++|.|++|+|||+++..||..+...+..++.+++..+.. .....+. .....|. .....+......+..++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~--~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA--GAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH--HHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 468999999999999999999987755444554455442211 0000010 0000000 00001111111222322
Q ss_pred -HhCCCeEEEEccccccC--HHHHHHHHHHHh
Q 002758 587 -LKKPLSVVYLENVDKAD--VHVQNSLSKAIQ 615 (884)
Q Consensus 587 -~~~p~~VIlLDEIEKa~--~~vq~~Llq~le 615 (884)
....+.+||+|....++ ......|..+.+
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~ 249 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTDANLMDELKKIVR 249 (336)
T ss_pred HHhCCCCEEEEECCCccCCcHHHHHHHHHHHH
Confidence 23345699999999885 566667666654
No 276
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.035 Score=67.26 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=69.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCC
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 591 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~ 591 (884)
...+|++|++|+|||++.++.|..+ +-+++.+||.+.-.+.. ++. .+-+..+....+..+.
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~l---g~h~~evdc~el~~~s~-----------~~~-----etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASEL---GLHLLEVDCYELVAESA-----------SHT-----ETKLQAIFSRARRCSP 491 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHh---CCceEeccHHHHhhccc-----------chh-----HHHHHHHHHHHhhcCc
Confidence 3489999999999999999999998 57889999885322100 111 1234556666677778
Q ss_pred eEEEEcccccc--------CHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCC
Q 002758 592 SVVYLENVDKA--------DVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFV 641 (884)
Q Consensus 592 ~VIlLDEIEKa--------~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g 641 (884)
.||||-++|-. +..++..+-..+..-.+ .-++...|||.|++..
T Consensus 492 avifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~------~~~~~~~ivv~t~~s~ 543 (953)
T KOG0736|consen 492 AVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDF------KFSCPPVIVVATTSSI 543 (953)
T ss_pred eEEEEeccceeeecCCCchhHHHHHHHHHHHhcccc------cCCCCceEEEEecccc
Confidence 99999888743 23445555444441111 1234578999998853
No 277
>PRK10536 hypothetical protein; Provisional
Probab=96.03 E-value=0.041 Score=59.78 Aligned_cols=23 Identities=35% Similarity=0.290 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+++.||.|||||+||.++|...
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999853
No 278
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.03 E-value=0.056 Score=63.52 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHH
Q 002758 484 DEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 484 ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
..-|.+|-.++.++.. ..+.-+ .-.+|++||+||||++..+.|++.+
T Consensus 88 kkKI~eVk~WL~~~~~--~~~~l~----~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAE--FTPKLG----SRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHH--hccCCC----ceEEEEeCCCCCCchhHHHHHHHhh
Confidence 3345667777774322 111111 1279999999999999999999988
No 279
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.98 E-value=0.018 Score=59.60 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=24.9
Q ss_pred HhcccceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHh
Q 002758 768 FFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAA 821 (884)
Q Consensus 768 fl~rID~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~ 821 (884)
+++|... +...||+.++..+.+...+.+. +.+.++++.++.|...
T Consensus 179 ~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 179 LFGRFSH-IELKPLSKEEAREFLKELFKEL--------IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp TTT---E-EEE----HHHHHHHHHHHHHCC--------------HHHHHHHHHH
T ss_pred cccccce-EEEeeCCHHHHHHHHHHHHHHh--------hcccCCHHHHHHHHHH
Confidence 5667766 9999999999998888765442 2235689998888775
No 280
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.83 E-value=0.038 Score=60.65 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=47.8
Q ss_pred HHHHHHHhhccCcc-----chHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcce
Q 002758 469 WKTLFRALTEKIDW-----QDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 543 (884)
Q Consensus 469 lk~L~~~L~~~ViG-----Q~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~f 543 (884)
.+.|.+.+.+++.+ +..+...+.+.+.........+-....+....++|.||+|+|||+++..||..+-..+..+
T Consensus 24 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V 103 (272)
T TIGR00064 24 VEKIIEALKKELKGKKVKDAELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSV 103 (272)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 44444444443332 3445566666666654322111111112234788899999999999999998776555566
Q ss_pred EEeccC
Q 002758 544 ICADLC 549 (884)
Q Consensus 544 i~id~s 549 (884)
.-+++.
T Consensus 104 ~li~~D 109 (272)
T TIGR00064 104 LLAAGD 109 (272)
T ss_pred EEEeCC
Confidence 666665
No 281
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.79 E-value=0.12 Score=60.20 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=61.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHc--CCCcceEEeccCCCCCCCCCCCCcc-ccccccccccccccchHHHHHHHHHh-C
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIY--GGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAWELLK-K 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~--gs~~~fi~id~s~~~~e~~~~s~L~-p~gy~G~~~g~rgk~~l~~L~eal~~-~ 589 (884)
.++|.||+|+|||+++..||..+. .....+..+++..+.. .....+. -....+... +... ....+..++.. .
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~--~a~eqL~~~a~~~~vp~-~~~~-~~~~l~~~l~~~~ 298 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI--GAVEQLKTYAKIMGIPV-EVVY-DPKELAKALEQLR 298 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH--HHHHHHHHHHHHhCCce-EccC-CHHhHHHHHHHhC
Confidence 799999999999999998887654 3344555666553210 0000000 000000000 0000 01344444443 3
Q ss_pred CCeEEEEccccc--cCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCc
Q 002758 590 PLSVVYLENVDK--ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVE 642 (884)
Q Consensus 590 p~~VIlLDEIEK--a~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~ 642 (884)
.+.+||||-... .+......|.++++.-. .. -.+++|++++.+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~------~~---~~~~LVl~a~~~~ 344 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSG------EP---IDVYLVLSATTKY 344 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccC------CC---CeEEEEEECCCCH
Confidence 468999997765 44556667777777210 11 2456788877643
No 282
>PRK06696 uridine kinase; Validated
Probab=95.78 E-value=0.022 Score=60.35 Aligned_cols=56 Identities=23% Similarity=0.216 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 484 DEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 484 ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
.+.+..|+..+..... ..+..+.+.|++|+|||++|+.|++.+-..+.+++.+.|.
T Consensus 4 ~~~~~~la~~~~~~~~----------~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~D 59 (223)
T PRK06696 4 KQLIKELAEHILTLNL----------TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASID 59 (223)
T ss_pred HHHHHHHHHHHHHhCC----------CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccc
Confidence 3456777777765332 2346899999999999999999999985444456666555
No 283
>PRK10867 signal recognition particle protein; Provisional
Probab=95.73 E-value=0.071 Score=62.20 Aligned_cols=40 Identities=18% Similarity=0.078 Sum_probs=31.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHHcCC-CcceEEeccCC
Q 002758 511 RDIWFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLCP 550 (884)
Q Consensus 511 ~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs-~~~fi~id~s~ 550 (884)
.+.+++|.|++|+|||+++..||..+... +..+..+++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 35799999999999999999999877544 45555566653
No 284
>PHA00729 NTP-binding motif containing protein
Probab=95.68 E-value=0.02 Score=61.07 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHc
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
.+++.|++|+|||++|.+||+.+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999874
No 285
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.66 E-value=0.045 Score=63.63 Aligned_cols=163 Identities=10% Similarity=0.067 Sum_probs=82.5
Q ss_pred hHhHHHHHHHhhccCccch---------HHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHH
Q 002758 466 LSNWKTLFRALTEKIDWQD---------EAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 466 ~e~lk~L~~~L~~~ViGQ~---------eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
..-.+.+.+.+.+++.|++ .++..+.+.+.....+...+-.+....+..++|+|++|+|||+++..||..+
T Consensus 45 ~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 45 IKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3344566666666555443 3445555555443221111111222235689999999999999999999877
Q ss_pred cCCCcceEEeccCCCCCCCCCCCCc------c-ccccccccccccccchHHHHHHH---HHhCCCeEEEEccccccCH--
Q 002758 537 YGGKENFICADLCPQDGEMNNPPKF------Y-HQVVGGDSVQFRGKTLADYVAWE---LLKKPLSVVYLENVDKADV-- 604 (884)
Q Consensus 537 ~gs~~~fi~id~s~~~~e~~~~s~L------~-p~gy~G~~~g~rgk~~l~~L~ea---l~~~p~~VIlLDEIEKa~~-- 604 (884)
-..+..+.-+++..|.. .....| . -|-|..+.. ........++ ++...+.+||+|=..+.+.
T Consensus 125 ~~~G~kV~lV~~D~~R~--aA~eQLk~~a~~~~vp~~~~~~~----~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~ 198 (429)
T TIGR01425 125 QRKGFKPCLVCADTFRA--GAFDQLKQNATKARIPFYGSYTE----SDPVKIASEGVEKFKKENFDIIIVDTSGRHKQED 198 (429)
T ss_pred HHCCCCEEEEcCcccch--hHHHHHHHHhhccCCeEEeecCC----CCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchH
Confidence 54444555566653311 000000 0 000100000 1111112222 3334678999999887764
Q ss_pred HHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCccc
Q 002758 605 HVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDA 644 (884)
Q Consensus 605 ~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~~ 644 (884)
.....|.++.+. +.-..+++|+.+..|.+.
T Consensus 199 ~lm~El~~i~~~----------~~p~e~lLVlda~~Gq~a 228 (429)
T TIGR01425 199 SLFEEMLQVAEA----------IQPDNIIFVMDGSIGQAA 228 (429)
T ss_pred HHHHHHHHHhhh----------cCCcEEEEEeccccChhH
Confidence 344555544432 111246788877665443
No 286
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.62 E-value=0.036 Score=60.13 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=57.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC-CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s-~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
.++|.|++|+|||++.++|.+.+-.....++.+.-. ++. ....+.+ .....-...++.+.+..+++.+| .
T Consensus 129 ~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~--l~~~~~~------~~~~~~~~~~~~~~l~~~LR~~p-D 199 (270)
T PF00437_consen 129 NILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR--LPGPNQI------QIQTRRDEISYEDLLKSALRQDP-D 199 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S----SCSSEE------EEEEETTTBSHHHHHHHHTTS---S
T ss_pred EEEEECCCccccchHHHHHhhhccccccceEEecccccee--ecccceE------EEEeecCcccHHHHHHHHhcCCC-C
Confidence 799999999999999999999876554666766533 111 1111110 00000001245567777888776 6
Q ss_pred EEEEccccccCHHHHHHHHHHHhCCe
Q 002758 593 VVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 593 VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
+|++.||--. ++... ++++.+|.
T Consensus 200 ~iiigEiR~~--e~~~~-~~a~~tGh 222 (270)
T PF00437_consen 200 VIIIGEIRDP--EAAEA-IQAANTGH 222 (270)
T ss_dssp EEEESCE-SC--HHHHH-HHHHHTT-
T ss_pred cccccccCCH--hHHHH-HHhhccCC
Confidence 8899999854 66666 88999885
No 287
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.58 E-value=0.015 Score=59.39 Aligned_cols=38 Identities=29% Similarity=0.211 Sum_probs=35.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
+.++-|.|.+|+|||++|.+|++.|+..+...+.+|..
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGD 60 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGD 60 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecCh
Confidence 45899999999999999999999999998898989876
No 288
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=0.039 Score=58.67 Aligned_cols=91 Identities=16% Similarity=0.240 Sum_probs=57.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCC-----CcceEEeccCC-CCCCCCCCCCcccccccccccccccc--------chH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGG-----KENFICADLCP-QDGEMNNPPKFYHQVVGGDSVQFRGK--------TLA 579 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs-----~~~fi~id~s~-~~~e~~~~s~L~p~gy~G~~~g~rgk--------~~l 579 (884)
..|+.|||++|||++.+-||+.+-.. ...+.-+|-+. ..+ +..|...--+|. ...
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag-----------~~~gvpq~~~g~R~dVld~cpk~ 207 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAG-----------CLNGVPQHGRGRRMDVLDPCPKA 207 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhc-----------cccCCchhhhhhhhhhcccchHH
Confidence 57999999999999999999988533 23344455331 100 111111100111 123
Q ss_pred HHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCC
Q 002758 580 DYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTG 617 (884)
Q Consensus 580 ~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G 617 (884)
.-+..+++..-.-|+++|||...... .+++.+++.|
T Consensus 208 ~gmmmaIrsm~PEViIvDEIGt~~d~--~A~~ta~~~G 243 (308)
T COG3854 208 EGMMMAIRSMSPEVIIVDEIGTEEDA--LAILTALHAG 243 (308)
T ss_pred HHHHHHHHhcCCcEEEEeccccHHHH--HHHHHHHhcC
Confidence 45678888877789999999875543 4677888876
No 289
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.51 E-value=0.072 Score=60.82 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=64.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
-+.++|+.|+|||.|.-.+...+-...+ .++..-... .++ +....... + ....+..++..+.+. ..|
T Consensus 64 GlYl~G~vG~GKT~Lmd~f~~~lp~~~k--~R~HFh~Fm---~~v----h~~l~~~~-~--~~~~l~~va~~l~~~-~~l 130 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLMDLFYDSLPIKRK--RRVHFHEFM---LDV----HSRLHQLR-G--QDDPLPQVADELAKE-SRL 130 (362)
T ss_pred eEEEECCCCCchhHHHHHHHHhCCcccc--ccccccHHH---HHH----HHHHHHHh-C--CCccHHHHHHHHHhc-CCE
Confidence 3999999999999999888887743222 111111000 000 00100000 0 111235566666554 469
Q ss_pred EEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCccccccccccccCCchhHHHH
Q 002758 594 VYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIY 662 (884)
Q Consensus 594 IlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~ 662 (884)
|.|||++=-|..---.|.++++. -+. .++++|+|||...+... ..++..++.+
T Consensus 131 LcfDEF~V~DiaDAmil~rLf~~-l~~---------~gvvlVaTSN~~P~~Ly------~~gl~r~~Fl 183 (362)
T PF03969_consen 131 LCFDEFQVTDIADAMILKRLFEA-LFK---------RGVVLVATSNRPPEDLY------KNGLQRERFL 183 (362)
T ss_pred EEEeeeeccchhHHHHHHHHHHH-HHH---------CCCEEEecCCCChHHHc------CCcccHHHHH
Confidence 99999986655443333333331 011 25779999998877643 3345555444
No 290
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=95.47 E-value=0.043 Score=63.77 Aligned_cols=147 Identities=10% Similarity=0.054 Sum_probs=83.7
Q ss_pred CCCccccchHhHHHHH----------HHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHH
Q 002758 458 PDLNCQFDLSNWKTLF----------RALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRK 527 (884)
Q Consensus 458 ~~~~~~~d~e~lk~L~----------~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~ 527 (884)
...|.+-+.|.|+.|. +.+.-.|+|..++.++|+-.+...-. -.-|.+-.-++|+.+||+|.||+.|+.
T Consensus 301 ~~~ft~eEEEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsr-K~LpDg~~lRGDINVLLLGDPgtAKSQ 379 (729)
T KOG0481|consen 301 ATMFTPEEEEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSR-KRLPDGVTLRGDINVLLLGDPGTAKSQ 379 (729)
T ss_pred cccCChhHHHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcCcc-ccCCCcceeccceeEEEecCCchhHHH
Confidence 3456655666666554 34445689999998888765543210 011223334579999999999999999
Q ss_pred HHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcc-cccccc-ccccccccchHHHHHHHHHhCCCeEEEEccccccCHH
Q 002758 528 IAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGG-DSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVH 605 (884)
Q Consensus 528 LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~-p~gy~G-~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~ 605 (884)
+.+-+-+.- |+-...-+.-...-....+++ .|.--. |-+| +|+--.-++||.|||+|||..+
T Consensus 380 lLKFvEkvs-----PIaVYTSGKGSSAAGLTASV~RD~~tReFylEG-----------GAMVLADgGVvCIDEFDKMre~ 443 (729)
T KOG0481|consen 380 LLKFVEKVS-----PIAVYTSGKGSSAAGLTASVIRDPSTREFYLEG-----------GAMVLADGGVVCIDEFDKMRED 443 (729)
T ss_pred HHHHHHhcC-----ceEEEecCCCcccccceeeEEecCCcceEEEec-----------ceEEEecCCEEEeehhhccCch
Confidence 987654421 111111110000000001111 110000 0011 1222234689999999999999
Q ss_pred HHHHHHHHHhCCeeeC
Q 002758 606 VQNSLSKAIQTGKLPD 621 (884)
Q Consensus 606 vq~~Llq~le~G~l~d 621 (884)
-.-++-.+||...+..
T Consensus 444 DRVAIHEAMEQQTISI 459 (729)
T KOG0481|consen 444 DRVAIHEAMEQQTISI 459 (729)
T ss_pred hhhHHHHHHHhhhHHH
Confidence 9999999999877655
No 291
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=95.46 E-value=0.033 Score=65.46 Aligned_cols=161 Identities=15% Similarity=0.103 Sum_probs=93.2
Q ss_pred HHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEecc
Q 002758 469 WKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 548 (884)
Q Consensus 469 lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~ 548 (884)
|..|.+.|.-.|.|++.+.++|.-.+.-.--.+- +++..-++|+.+|++|-|.+.|+.|.|.+-..- ..-| .-
T Consensus 292 FdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L-~NGshlRGDINiLlvGDPSvAKSQLLRyVLntA----plAI--~T 364 (818)
T KOG0479|consen 292 FDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNL-ENGSHLRGDINILLVGDPSVAKSQLLRYVLNTA----PLAI--AT 364 (818)
T ss_pred HHHHhhccCcccccHHHHHHHHHHHHhccceecc-CCCceeccceeEEEecCchHHHHHHHHHHHhcc----cccc--cc
Confidence 4455566777899999998887765543211111 223334679999999999999999988654432 0000 00
Q ss_pred CCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCC-CeEe
Q 002758 549 CPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSY-GREV 627 (884)
Q Consensus 549 s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~-Gr~V 627 (884)
.-.. .+.--|+..--...+.|-| ..=++|+--.-.+||.|||+|||...-.-++-.+||.|+++... |-..
T Consensus 365 TGRG---SSGVGLTAAVTtD~eTGER-----RLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHa 436 (818)
T KOG0479|consen 365 TGRG---SSGVGLTAAVTTDQETGER-----RLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHA 436 (818)
T ss_pred cCCC---CCCccceeEEeeccccchh-----hhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchh
Confidence 0000 0000000000000011100 11123333345689999999999999999999999999999864 4333
Q ss_pred ecC-ceEEEEecCCCccc
Q 002758 628 SVS-NAIFVTASSFVEDA 644 (884)
Q Consensus 628 ~~~-naI~IlTSN~g~~~ 644 (884)
.++ .+=+|++.|...+.
T Consensus 437 sLNARCSVlAAANPvyG~ 454 (818)
T KOG0479|consen 437 SLNARCSVLAAANPVYGQ 454 (818)
T ss_pred hhccceeeeeecCccccc
Confidence 332 34588888865543
No 292
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.16 Score=58.48 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=61.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHc------CCCcceEEeccCCCCCCCCCCCCcc-ccccccccccccccchHHHHHH
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIY------GGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAW 584 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~------gs~~~fi~id~s~~~~e~~~~s~L~-p~gy~G~~~g~rgk~~l~~L~e 584 (884)
+..++|+||+|+|||+++..||..+- |..--++.+|.-... ....+- -....|... +... ....+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a----a~eQL~~~a~~lgvpv-~~~~-~~~~l~~ 247 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG----AKKQIQTYGDIMGIPV-KAIE-SFKDLKE 247 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH----HHHHHHHHhhcCCcce-EeeC-cHHHHHH
Confidence 34899999999999999998887653 222334444432110 000110 000001100 0001 1134444
Q ss_pred HHHh-CCCeEEEEccccccCHHH--HHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCcc
Q 002758 585 ELLK-KPLSVVYLENVDKADVHV--QNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643 (884)
Q Consensus 585 al~~-~p~~VIlLDEIEKa~~~v--q~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~ 643 (884)
++.. ..+.+|++|.+.+.+... ...+.+.++.... + ...++|+.++.+..
T Consensus 248 ~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~-~--------~e~~LVlsat~~~~ 300 (388)
T PRK12723 248 EITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR-D--------AEFHLAVSSTTKTS 300 (388)
T ss_pred HHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC-C--------CeEEEEEcCCCCHH
Confidence 4433 446899999999987543 3455555553211 0 14678887776543
No 293
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.15 Score=58.64 Aligned_cols=100 Identities=11% Similarity=0.045 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcc-ccccccccccccccchHHHHHHHHHh---
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAWELLK--- 588 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~-p~gy~G~~~g~rgk~~l~~L~eal~~--- 588 (884)
-.++|.||+|+|||+++..||..+.+.+..+..+++..+.. .....+. .....|... +...+ -..+..++..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ri--aAvEQLk~yae~lgipv-~v~~d-~~~L~~aL~~lk~ 317 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRI--GTVQQLQDYVKTIGFEV-IAVRD-EAAMTRALTYFKE 317 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcch--HHHHHHHHHhhhcCCcE-EecCC-HHHHHHHHHHHHh
Confidence 37999999999999999999998876665666666653310 0111111 000001000 00000 1234444422
Q ss_pred -CCCeEEEEccccccC--HHHHHHHHHHHhC
Q 002758 589 -KPLSVVYLENVDKAD--VHVQNSLSKAIQT 616 (884)
Q Consensus 589 -~p~~VIlLDEIEKa~--~~vq~~Llq~le~ 616 (884)
..+.+||+|-....+ ......|.++++.
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~ 348 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQ 348 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhh
Confidence 246899999998876 4456667777664
No 294
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.44 E-value=0.08 Score=58.89 Aligned_cols=93 Identities=18% Similarity=0.152 Sum_probs=57.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCC--CcceEEeccC-CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGG--KENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKP 590 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs--~~~fi~id~s-~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p 590 (884)
.+++.|++|+|||+++++|...+-.. ...++.+.-. +.. ....+.+. + ....+. .++.+.+..+++.+|
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~--~~~~~~v~---~-~~~~~~--~~~~~~l~~aLR~~p 205 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQ--CAAPNVVQ---L-RTSDDA--ISMTRLLKATLRLRP 205 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhc--CCCCCEEE---E-EecCCC--CCHHHHHHHHhcCCC
Confidence 69999999999999999999887432 3456665432 111 00111110 0 001110 145567778888876
Q ss_pred CeEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 591 LSVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 591 ~~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
.+|++.||-- +++.. +++++.+|.
T Consensus 206 -D~iivGEiR~--~ea~~-~l~a~~tGh 229 (299)
T TIGR02782 206 -DRIIVGEVRG--GEALD-LLKAWNTGH 229 (299)
T ss_pred -CEEEEeccCC--HHHHH-HHHHHHcCC
Confidence 5666999984 45544 589999884
No 295
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.42 E-value=0.014 Score=59.46 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+++.|++|+|||++.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 38999999999999999988887
No 296
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.42 E-value=0.082 Score=54.38 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=55.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC-CCCCCCCCCC--Ccc-ccccccccccccccchHHHHHHHHHhC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPP--KFY-HQVVGGDSVQFRGKTLADYVAWELLKK 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s-~~~~e~~~~s--~L~-p~gy~G~~~g~rgk~~l~~L~eal~~~ 589 (884)
.++|.||+|+|||++.++|+..+.. ....+.+.-. +.. ..... .+. .+. ...++...++.+.+..+++.+
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~-~~~~i~ied~~E~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~lR~~ 100 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPP-DERIITIEDTAELQ--LPHPNWVRLVTRPG---NVEGSGEVTMADLLRSALRMR 100 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEECCccccC--CCCCCEEEEEEecC---CCCCCCccCHHHHHHHHhccC
Confidence 7999999999999999999988753 3344554322 110 00000 010 000 001111123445666677777
Q ss_pred CCeEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 590 PLSVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 590 p~~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
| .+|++.||-- ++... +++++.+|.
T Consensus 101 p-d~i~igEir~--~ea~~-~~~a~~tGh 125 (186)
T cd01130 101 P-DRIIVGEVRG--GEALD-LLQAMNTGH 125 (186)
T ss_pred C-CEEEEEccCc--HHHHH-HHHHHhcCC
Confidence 5 7888999974 45544 677888774
No 297
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.40 E-value=0.16 Score=58.93 Aligned_cols=121 Identities=11% Similarity=-0.014 Sum_probs=63.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHH-cCCCcceEEeccCCCCCCCCCCCCcc-ccccccccccccccchHHHHHHHHHhC
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEII-YGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAWELLKK 589 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L-~gs~~~fi~id~s~~~~e~~~~s~L~-p~gy~G~~~g~rgk~~l~~L~eal~~~ 589 (884)
...++|.||+|+|||+++..||... ...+..+..+++..+.. .....+. .....|. .+........+..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~--aA~eQLk~yAe~lgv--p~~~~~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI--AAIEQLKRYADTMGM--PFYPVKDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh--hHHHHHHHHHHhcCC--CeeehHHHHHHHHHHHhC
Confidence 3579999999999999999999754 33344444455543211 0000110 0000010 110000123455556555
Q ss_pred CCeEEEEcccccc--CHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCcc
Q 002758 590 PLSVVYLENVDKA--DVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643 (884)
Q Consensus 590 p~~VIlLDEIEKa--~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~ 643 (884)
.+.+||||=.... +......|..+++.-...+ -...++|+.++.+.+
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~-------~~e~~LVLsAt~~~~ 347 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKD-------SVENLLVLSSTSSYH 347 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCC-------CCeEEEEEeCCCCHH
Confidence 6789999955443 3455566666655321111 124678887776553
No 298
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.40 E-value=0.013 Score=58.84 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=38.3
Q ss_pred CccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 480 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
++|.++.++.|...+. .... .....++++|++|+|||++.+++...+-.....++.+++..
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~---------~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQS---------GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS--------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred CCCHHHHHHHHHHHHH-HHHc---------CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 5788888888888776 2211 11237999999999999999988887754433467777663
No 299
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.35 E-value=0.058 Score=61.53 Aligned_cols=137 Identities=9% Similarity=0.130 Sum_probs=72.8
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCC----CCCCC
Q 002758 483 QDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDG----EMNNP 558 (884)
Q Consensus 483 Q~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~----e~~~~ 558 (884)
|..+...|..++.. .. +..+++.|+.|||||++.++|...+-.....++.+--....+ .....
T Consensus 6 Q~~~~~~v~~~~~~-~~------------~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~ 72 (364)
T PF05970_consen 6 QRRVFDTVIEAIEN-EE------------GLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTI 72 (364)
T ss_pred HHHHHHHHHHHHHc-cC------------CcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcch
Confidence 66666666666543 11 237999999999999999999998755444444332221100 01122
Q ss_pred CCcc--ccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEE
Q 002758 559 PKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVT 636 (884)
Q Consensus 559 s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~Il 636 (884)
++++ |.+.... ..........+...++. -.+|++|||-.++..+...+-+.|..=+-... ....|+...+|+
T Consensus 73 hs~f~i~~~~~~~--~~~~~~~~~~~~~~l~~--~~~lIiDEism~~~~~l~~i~~~lr~i~~~~~--~~~pFGG~~vil 146 (364)
T PF05970_consen 73 HSFFGIPINNNEK--SQCKISKNSRLRERLRK--ADVLIIDEISMVSADMLDAIDRRLRDIRKSKD--SDKPFGGKQVIL 146 (364)
T ss_pred HHhcCcccccccc--ccccccccchhhhhhhh--heeeecccccchhHHHHHHHHHhhhhhhcccc--hhhhcCcceEEe
Confidence 2322 2111110 00000001223333333 36999999999999988888776664221100 134455555666
Q ss_pred ec
Q 002758 637 AS 638 (884)
Q Consensus 637 TS 638 (884)
.-
T Consensus 147 ~G 148 (364)
T PF05970_consen 147 FG 148 (364)
T ss_pred eh
Confidence 43
No 300
>PHA02774 E1; Provisional
Probab=95.34 E-value=0.077 Score=63.40 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=55.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
.++|+||+|+|||.+|.+|++.+.|..-.| ++... .|. ++.+.+ ..|
T Consensus 436 civ~~GPP~TGKS~fa~sL~~~L~G~vi~f--vN~~s---------------------~Fw----Lqpl~d------~ki 482 (613)
T PHA02774 436 CLVIYGPPDTGKSMFCMSLIKFLKGKVISF--VNSKS---------------------HFW----LQPLAD------AKI 482 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEE--EECcc---------------------ccc----cchhcc------CCE
Confidence 799999999999999999999985443222 33210 010 112222 258
Q ss_pred EEEcccccc-CHHHHHHHHHHHhCCeeeC--CCCeEeecCceEEEEecCC
Q 002758 594 VYLENVDKA-DVHVQNSLSKAIQTGKLPD--SYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 594 IlLDEIEKa-~~~vq~~Llq~le~G~l~d--s~Gr~V~~~naI~IlTSN~ 640 (884)
++|||+-.. -.-+...|..+|+...+.. .+-..+.++-.-+|+|||+
T Consensus 483 ~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~ 532 (613)
T PHA02774 483 ALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNI 532 (613)
T ss_pred EEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCC
Confidence 999999332 1233445666666543221 1222344444558889996
No 301
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.23 E-value=0.036 Score=62.51 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=51.4
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
..++|=++++..|+..+..+..|+..+++ .++|.||.|+||+++++.|-+.+- ..+++.+..+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~kr-------Il~L~GPvg~GKSsl~~~Lk~~le--~y~~Y~l~~~ 123 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKR-------ILLLLGPVGGGKSSLAELLKRGLE--EYPIYTLKGC 123 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccce-------EEEEECCCCCCHHHHHHHHHHHhh--eEEEEEecCC
Confidence 46899999999999999988777765543 899999999999999999999883 2266666544
No 302
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.23 E-value=0.1 Score=59.82 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=60.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcC--CCcceEEeccC-CCCCCCCCCCCcc--ccccccccccccccchHHHHHHHHHh
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYG--GKENFICADLC-PQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLK 588 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~g--s~~~fi~id~s-~~~~e~~~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~ 588 (884)
.+++.||+|+|||++.++|.+.+.. ....++.+.=. ++. ......+. .+.-+|.+. .++...+..+++.
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~--~~~~~~~~~~~q~evg~~~----~~~~~~l~~aLR~ 224 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYI--LGSPDDLLPPAQSQIGRDV----DSFANGIRLALRR 224 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhc--cCCCceeecccccccCCCc----cCHHHHHHHhhcc
Confidence 5899999999999999999988742 23456666422 111 00111111 011112111 1344567778887
Q ss_pred CCCeEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 589 ~p~~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
.| .+|++.||- +.+....++++.++|.
T Consensus 225 ~P-D~I~vGEiR--d~et~~~al~aa~TGH 251 (372)
T TIGR02525 225 AP-KIIGVGEIR--DLETFQAAVLAGQSGH 251 (372)
T ss_pred CC-CEEeeCCCC--CHHHHHHHHHHHhcCC
Confidence 75 788899997 5677777889999884
No 303
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.21 E-value=0.11 Score=59.23 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=58.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcC---CCcceEEeccC-CCCC-CCCCCCCccccccccccccccccchHHHHHHHHHh
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYG---GKENFICADLC-PQDG-EMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLK 588 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~g---s~~~fi~id~s-~~~~-e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~ 588 (884)
.+++.||+|+|||++.++|.+.+.. ....++.+.-. ++.- ........+.+.-++.. ..++...+..+++.
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~----~~~~~~~l~~aLR~ 211 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRH----LNNFAAGVRNALRR 211 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeecccc----ccCHHHHHHHHhcc
Confidence 7999999999999999999998732 23344443211 1100 00000001111101100 01344667778888
Q ss_pred CCCeEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 589 KPLSVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 589 ~p~~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
.|. +|++.|+. +.+.....+++..+|.
T Consensus 212 ~Pd-~i~vGEiR--d~et~~~al~aa~tGh 238 (358)
T TIGR02524 212 KPH-AILVGEAR--DAETISAALEAALTGH 238 (358)
T ss_pred CCC-EEeeeeeC--CHHHHHHHHHHHHcCC
Confidence 875 88899876 7788888899999884
No 304
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.16 E-value=0.023 Score=56.65 Aligned_cols=24 Identities=25% Similarity=0.120 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHH
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
..++|.|++|+|||++|++||+.+
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999998
No 305
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.07 E-value=0.098 Score=60.97 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=31.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHHc-CCCcceEEeccCC
Q 002758 511 RDIWFNFTGPDLCGKRKIAIALAEIIY-GGKENFICADLCP 550 (884)
Q Consensus 511 ~~~~lLf~Gp~GvGKT~LA~aLAe~L~-gs~~~fi~id~s~ 550 (884)
.+.+++|.|++|+|||++|..||..+. ..+..+..+++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~ 138 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDL 138 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 467999999999999999999998875 3345566666663
No 306
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.05 E-value=0.11 Score=58.36 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=56.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHc--CCCcceEEeccC-CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIY--GGKENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKP 590 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~--gs~~~fi~id~s-~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p 590 (884)
++++.|++|+|||+++++|+..+. .....++.+.=. ++.- .. +.++.+..+ ...++.+.+..+++.+|
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~--~~------~~~v~~~~~-~~~~~~~ll~~aLR~~P 220 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQC--AA------ENYVQYHTS-IDVNMTALLKTTLRMRP 220 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcccc--CC------CCEEEEecC-CCCCHHHHHHHHhcCCC
Confidence 799999999999999999998752 334555655422 1110 00 111111000 01234567777888776
Q ss_pred CeEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 591 LSVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 591 ~~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
.+|++.||--. ++.. +++++.+|.
T Consensus 221 -D~IivGEiR~~--Ea~~-~l~A~~tGh 244 (319)
T PRK13894 221 -DRILVGEVRGP--EALD-LLMAWNTGH 244 (319)
T ss_pred -CEEEEeccCCH--HHHH-HHHHHHcCC
Confidence 56779999853 5544 689999884
No 307
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.01 E-value=0.11 Score=58.45 Aligned_cols=39 Identities=15% Similarity=0.003 Sum_probs=30.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
+..++|+||+|+|||+++..||..+-..+..+.-+++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 458999999999999999999998865555555566553
No 308
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.97 E-value=0.17 Score=56.10 Aligned_cols=134 Identities=11% Similarity=0.063 Sum_probs=71.1
Q ss_pred HHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcC------CCcceE
Q 002758 471 TLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG------GKENFI 544 (884)
Q Consensus 471 ~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~g------s~~~fi 544 (884)
.+......+.||-..|...+...-... ..|++.. . -.+|++|+++.|||++++.+.+..-- ..-+++
T Consensus 27 RI~~i~~~rWIgY~~A~~~L~~L~~Ll----~~P~~~R--m-p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv 99 (302)
T PF05621_consen 27 RIAYIRADRWIGYPRAKEALDRLEELL----EYPKRHR--M-PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVV 99 (302)
T ss_pred HHHHHhcCCeecCHHHHHHHHHHHHHH----hCCcccC--C-CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEE
Confidence 444455788999998876654432222 2222211 1 16999999999999999998875421 113667
Q ss_pred EeccCCCCCCCCCCCCcc----ccccccccccccccchHHHHHHHHHhCCCeEEEEcccccc---CHHHHHHHHHHHh
Q 002758 545 CADLCPQDGEMNNPPKFY----HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKA---DVHVQNSLSKAIQ 615 (884)
Q Consensus 545 ~id~s~~~~e~~~~s~L~----p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa---~~~vq~~Llq~le 615 (884)
.+.|....+ ...+. ..-...+....+..........-++...-.+++||||+.+ ...-|..++.+|.
T Consensus 100 ~vq~P~~p~----~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK 173 (302)
T PF05621_consen 100 YVQMPPEPD----ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK 173 (302)
T ss_pred EEecCCCCC----hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH
Confidence 777653211 11111 0000011111000001122334556666689999999974 3344555555554
No 309
>PRK08118 topology modulation protein; Reviewed
Probab=94.92 E-value=0.024 Score=57.57 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=25.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
-++++||+|+|||++|+.|++.+ +-+++.+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l---~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL---NIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCceecc
Confidence 38999999999999999999987 44555555
No 310
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.92 E-value=0.16 Score=57.12 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=55.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHc--CCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIY--GGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 591 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~--gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~ 591 (884)
.+++.|++|+|||+++++|...+. .....++.+.=.. |.... ++..+..... .+.++.+.+..+++.+|
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~---El~~~----~~n~v~l~~~-~~~~~~~lv~~aLR~~P- 216 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTA---EIQCA----AENAVALHTS-DTVDMARLLKSTMRLRP- 216 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCc---ccccC----CCCEEEeccC-CCcCHHHHHHHHhCCCC-
Confidence 599999999999999999998874 2234555554221 10000 0111110000 01234466777888776
Q ss_pred eEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 592 SVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 592 ~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
.+|++-||-- .++.. +++++.+|.
T Consensus 217 D~IivGEiRg--~ea~~-~l~a~~tGh 240 (323)
T PRK13833 217 DRIIVGEVRD--GAALT-LLKAWNTGH 240 (323)
T ss_pred CEEEEeecCC--HHHHH-HHHHHcCCC
Confidence 5666999964 35554 688888873
No 311
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.89 E-value=0.1 Score=61.04 Aligned_cols=40 Identities=15% Similarity=-0.015 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 511 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 511 ~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
.+..++|+|++|+|||++|..||..+-..+..+..+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 4568999999999999999999988764445566666653
No 312
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.88 E-value=0.023 Score=54.90 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+++.||+|+|||++|+.|++.+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 47999999999999999999877
No 313
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.88 E-value=0.19 Score=60.83 Aligned_cols=94 Identities=21% Similarity=0.169 Sum_probs=61.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC-CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s-~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
.+||.||+|+|||++..++.+.+......++.+.=. ++.- .....+- +.. -.|.++...+..+++..| -
T Consensus 318 lilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~--~~~~q~~----v~~---~~g~~~~~~l~~~LR~dP-D 387 (564)
T TIGR02538 318 MVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL--PGINQVN----VNP---KIGLTFAAALRSFLRQDP-D 387 (564)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC--CCceEEE----ecc---ccCCCHHHHHHHHhccCC-C
Confidence 699999999999999887777775444455554322 1110 0111100 000 123456677788888876 7
Q ss_pred EEEEccccccCHHHHHHHHHHHhCCee
Q 002758 593 VVYLENVDKADVHVQNSLSKAIQTGKL 619 (884)
Q Consensus 593 VIlLDEIEKa~~~vq~~Llq~le~G~l 619 (884)
||++.||- +.+.....+++..+|.+
T Consensus 388 vI~vGEiR--d~eta~~a~~aa~tGHl 412 (564)
T TIGR02538 388 IIMVGEIR--DLETAEIAIKAAQTGHL 412 (564)
T ss_pred EEEeCCCC--CHHHHHHHHHHHHcCCc
Confidence 88999997 77877888888888853
No 314
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.87 E-value=0.56 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHH
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+++|+||+|+|||+++..||..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999864
No 315
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.79 E-value=0.034 Score=56.07 Aligned_cols=99 Identities=16% Similarity=0.021 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccc--hHHHHHHHHHhC
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKT--LADYVAWELLKK 589 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~--~l~~L~eal~~~ 589 (884)
+.++.|.|.+|+|||+||++|.+.|+....+.+.+|....-. ..+ +++ |+...-|... .+..++..+..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~---~l~----~dl-~fs~~dR~e~~rr~~~~A~ll~~~ 73 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH---GLN----ADL-GFSKEDREENIRRIAEVAKLLADQ 73 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT---TTT----TT---SSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh---ccC----CCC-CCCHHHHHHHHHHHHHHHHHHHhC
Confidence 358999999999999999999999998888999999774211 000 010 2221111111 123334444443
Q ss_pred CCeEEEEccccccCHHHHHHHHHHHhCCeee
Q 002758 590 PLSVVYLENVDKADVHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 590 p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ 620 (884)
..++++. +--...+......+.+..++|.
T Consensus 74 -G~ivIva-~isp~~~~R~~~R~~~~~~~f~ 102 (156)
T PF01583_consen 74 -GIIVIVA-FISPYREDREWARELIPNERFI 102 (156)
T ss_dssp -TSEEEEE-----SHHHHHHHHHHHHTTEEE
T ss_pred -CCeEEEe-eccCchHHHHHHHHhCCcCceE
Confidence 3444444 3334467777777777766543
No 316
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.69 E-value=0.13 Score=61.08 Aligned_cols=94 Identities=18% Similarity=0.148 Sum_probs=59.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC-CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s-~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
.+++.||+|+|||++..++...+......++.+.=. ++.- ...... -+.. -.|.++...+..+++..| .
T Consensus 244 lilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~--~~~~q~----~v~~---~~g~~f~~~lr~~LR~dP-D 313 (486)
T TIGR02533 244 IILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI--EGIGQI----QVNP---KIGLTFAAGLRAILRQDP-D 313 (486)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec--CCCceE----EEcc---ccCccHHHHHHHHHhcCC-C
Confidence 799999999999999997766664444556665422 1110 000100 0000 113456677888888876 7
Q ss_pred EEEEccccccCHHHHHHHHHHHhCCee
Q 002758 593 VVYLENVDKADVHVQNSLSKAIQTGKL 619 (884)
Q Consensus 593 VIlLDEIEKa~~~vq~~Llq~le~G~l 619 (884)
||++.||- +.+.....+++..+|.+
T Consensus 314 vI~vGEiR--d~eta~~a~~aa~tGHl 338 (486)
T TIGR02533 314 IIMVGEIR--DLETAQIAIQASLTGHL 338 (486)
T ss_pred EEEEeCCC--CHHHHHHHHHHHHhCCc
Confidence 88999996 45666777888888854
No 317
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.67 E-value=0.13 Score=56.51 Aligned_cols=107 Identities=19% Similarity=0.246 Sum_probs=64.8
Q ss_pred CccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCC
Q 002758 480 IDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP 559 (884)
Q Consensus 480 ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s 559 (884)
++=-++|+.-|++..+..+. |.| ++||.|..|+||+.+++..| .+. +-.++.+.++.
T Consensus 10 lVlf~~ai~hi~ri~RvL~~-------~~G----h~LLvG~~GsGr~sl~rLaa-~i~--~~~~~~i~~~~--------- 66 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLSQ-------PRG----HALLVGVGGSGRQSLARLAA-FIC--GYEVFQIEITK--------- 66 (268)
T ss_dssp ----HHHHHHHHHHHHHHCS-------TTE----EEEEECTTTSCHHHHHHHHH-HHT--TEEEE-TTTST---------
T ss_pred eeeHHHHHHHHHHHHHHHcC-------CCC----CeEEecCCCccHHHHHHHHH-HHh--ccceEEEEeeC---------
Confidence 34456777777765554322 223 89999999999999998554 443 33445454431
Q ss_pred CccccccccccccccccchHHHHHHHH----HhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeC
Q 002758 560 KFYHQVVGGDSVQFRGKTLADYVAWEL----LKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 560 ~L~p~gy~G~~~g~rgk~~l~~L~eal----~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~d 621 (884)
+|.. +.+.+.|..++ -++...|++|+|-+-.+..+...+-.+|.+|.+.+
T Consensus 67 --------~y~~----~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~ 120 (268)
T PF12780_consen 67 --------GYSI----KDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPN 120 (268)
T ss_dssp --------TTHH----HHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TT
T ss_pred --------CcCH----HHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCC
Confidence 1111 11223343333 34556889999988888899999999999998764
No 318
>PRK13947 shikimate kinase; Provisional
Probab=94.63 E-value=0.036 Score=55.59 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=26.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
++++.|++|+|||++|+.||+.+ +.+|+..|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEECc
Confidence 69999999999999999999998 45565444
No 319
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.59 E-value=0.2 Score=56.51 Aligned_cols=95 Identities=20% Similarity=0.174 Sum_probs=57.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC-CCCCCCCCCC--Ccc-ccccccccccccccchHHHHHHHHHhC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPP--KFY-HQVVGGDSVQFRGKTLADYVAWELLKK 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s-~~~~e~~~~s--~L~-p~gy~G~~~g~rgk~~l~~L~eal~~~ 589 (884)
.+++.|++|+|||++.++|...+- ....++.+.=. +..-. .+.+ .++ .+. + .+-...++.+.+..+++.+
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip-~~~ri~tiEd~~El~l~-~~~n~~~~~~~~~--~--~~~~~~~~~~ll~~~LR~~ 235 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIP-AIERLITVEDAREIVLS-NHPNRVHLLASKG--G--QGRAKVTTQDLIEACLRLR 235 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCC-CCCeEEEecCCCccccc-cCCCEEEEEecCC--C--CCcCcCcHHHHHHHHhccC
Confidence 699999999999999999998774 34566666422 11100 0111 111 010 0 1100123456777788888
Q ss_pred CCeEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 590 PLSVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 590 p~~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
| .+|++.||-- .++. .+++++.+|.
T Consensus 236 P-D~IivGEiR~--~ea~-~~l~a~~tGh 260 (332)
T PRK13900 236 P-DRIIVGELRG--AEAF-SFLRAINTGH 260 (332)
T ss_pred C-CeEEEEecCC--HHHH-HHHHHHHcCC
Confidence 6 5677999984 4555 4688999884
No 320
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.59 E-value=0.21 Score=56.70 Aligned_cols=95 Identities=14% Similarity=0.174 Sum_probs=55.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC-CCCCCCCCCC--CccccccccccccccccchHHHHHHHHHhCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPP--KFYHQVVGGDSVQFRGKTLADYVAWELLKKP 590 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s-~~~~e~~~~s--~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p 590 (884)
.+++.||+|+|||+++++|+..+- ....++.+.=. +.. ....+ .++ |.....+..+.++.+.+..+++.+|
T Consensus 164 nilI~G~tGSGKTTll~aLl~~i~-~~~rivtiEd~~El~--l~~~~~v~l~---~~~~~~~~~~~t~~~ll~~~LR~~p 237 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIP-PQERLITIEDTLELV--IPHENHVRLL---YSKNGAGLGAVTAEHLLQASLRMRP 237 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcccC-CCCCEEEECCCcccc--CCCCCEEEEE---eeccccCcCccCHHHHHHHHhcCCC
Confidence 799999999999999999998764 34455655422 110 00001 111 0000011111234466777888876
Q ss_pred CeEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 591 LSVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 591 ~~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
.+|++-|+-- .+... +++++.+|.
T Consensus 238 -D~IivGEiR~--~ea~~-~l~a~~tGh 261 (344)
T PRK13851 238 -DRILLGEMRD--DAAWA-YLSEVVSGH 261 (344)
T ss_pred -CeEEEEeeCc--HHHHH-HHHHHHhCC
Confidence 5677999974 45554 677887763
No 321
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.53 E-value=0.045 Score=55.45 Aligned_cols=36 Identities=33% Similarity=0.155 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEecc
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 548 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~ 548 (884)
..++|.|++|+|||++|++|++.+.......+.+|.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 489999999999999999999998644444555653
No 322
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.45 E-value=0.18 Score=55.57 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=43.2
Q ss_pred hHHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCC--CcceEE
Q 002758 468 NWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGG--KENFIC 545 (884)
Q Consensus 468 ~lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs--~~~fi~ 545 (884)
-.+.|.+.+.+. ...+.+...+...|..... ......+.......++|+||+|+|||+++..||..+... ...+..
T Consensus 152 la~~L~~~l~~~-~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~l 229 (282)
T TIGR03499 152 LARELLEKLPER-ADAEDAWRWLREALEKMLP-VKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVAL 229 (282)
T ss_pred HHHHHHHHhhcc-CCHHHHHHHHHHHHHHHhc-cCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEE
Confidence 344444444432 2233455556665554332 111111111123479999999999999999999876422 234444
Q ss_pred eccC
Q 002758 546 ADLC 549 (884)
Q Consensus 546 id~s 549 (884)
+++.
T Consensus 230 i~~D 233 (282)
T TIGR03499 230 ITTD 233 (282)
T ss_pred EECC
Confidence 5544
No 323
>PF13479 AAA_24: AAA domain
Probab=94.45 E-value=0.1 Score=54.91 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.4
Q ss_pred CceEEEEEcCCCCchHHHHHHH
Q 002758 511 RDIWFNFTGPDLCGKRKIAIAL 532 (884)
Q Consensus 511 ~~~~lLf~Gp~GvGKT~LA~aL 532 (884)
....++++|++|+|||++|..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 3567999999999999998877
No 324
>PRK10436 hypothetical protein; Provisional
Probab=94.44 E-value=0.2 Score=59.01 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=58.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC-CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s-~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
.+|+.||+|+|||++..++-+.+......++.+.=. ++.- .....+ -++.. .|.++...+..+++..| .
T Consensus 220 liLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l--~gi~Q~----~v~~~---~g~~f~~~lr~~LR~dP-D 289 (462)
T PRK10436 220 LILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL--AGINQT----QIHPK---AGLTFQRVLRALLRQDP-D 289 (462)
T ss_pred eEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC--CCcceE----eeCCc---cCcCHHHHHHHHhcCCC-C
Confidence 699999999999998877666665444555555322 1110 000000 00111 23456677777888776 7
Q ss_pred EEEEccccccCHHHHHHHHHHHhCCee
Q 002758 593 VVYLENVDKADVHVQNSLSKAIQTGKL 619 (884)
Q Consensus 593 VIlLDEIEKa~~~vq~~Llq~le~G~l 619 (884)
||++.||- |.+.....+++..+|.+
T Consensus 290 vI~vGEIR--D~eta~~al~AA~TGHl 314 (462)
T PRK10436 290 VIMVGEIR--DGETAEIAIKAAQTGHL 314 (462)
T ss_pred EEEECCCC--CHHHHHHHHHHHHcCCc
Confidence 89999996 45666677788888854
No 325
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.40 E-value=0.21 Score=58.72 Aligned_cols=94 Identities=21% Similarity=0.181 Sum_probs=62.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC-CCCCCCCCCCCcccccccccccc-ccccchHHHHHHHHHhCCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQ-FRGKTLADYVAWELLKKPL 591 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s-~~~~e~~~~s~L~p~gy~G~~~g-~rgk~~l~~L~eal~~~p~ 591 (884)
-+|+.||+|+|||+.--++...++....+++.+.=. +|.- +|..-.... -.|-+|...|...+++.|
T Consensus 260 liLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~----------~gI~Q~qVN~k~gltfa~~LRa~LRqDP- 328 (500)
T COG2804 260 LILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQL----------PGINQVQVNPKIGLTFARALRAILRQDP- 328 (500)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeec----------CCcceeecccccCCCHHHHHHHHhccCC-
Confidence 799999999999999888888887766666665422 2211 111100000 133456566666677765
Q ss_pred eEEEEccccccCHHHHHHHHHHHhCCeee
Q 002758 592 SVVYLENVDKADVHVQNSLSKAIQTGKLP 620 (884)
Q Consensus 592 ~VIlLDEIEKa~~~vq~~Llq~le~G~l~ 620 (884)
-||++.||. |.+......++-.+|.+.
T Consensus 329 DvImVGEIR--D~ETAeiavqAalTGHLV 355 (500)
T COG2804 329 DVIMVGEIR--DLETAEIAVQAALTGHLV 355 (500)
T ss_pred CeEEEeccC--CHHHHHHHHHHHhcCCeE
Confidence 799999996 566777778888888654
No 326
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.38 E-value=0.036 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=20.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 002758 515 FNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
+++.|++|+|||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999997
No 327
>PRK03839 putative kinase; Provisional
Probab=94.36 E-value=0.041 Score=55.95 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.++|.|++|+|||++|+.||+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 328
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.23 E-value=0.19 Score=56.00 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=55.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC-CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s-~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
.+++.||+|+|||+++++|...+- .....+.++-. +.. ....+.+- -.+.....+....++.+.+..+++.+| .
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~-~~~~iv~ied~~El~--~~~~~~~~-l~~~~~~~~~~~~~~~~~l~~~Lr~~p-d 220 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIP-KDERIITIEDTREIF--LPHPNYVH-LFYSKGGQGLAKVTPKDLLQSCLRMRP-D 220 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCC-ccccEEEEcCccccC--CCCCCEEE-EEecCCCCCcCccCHHHHHHHHhcCCC-C
Confidence 799999999999999999998763 33445555421 111 01111100 000000111111234456677777765 6
Q ss_pred EEEEccccccCHHHHHHHHHHHhCC
Q 002758 593 VVYLENVDKADVHVQNSLSKAIQTG 617 (884)
Q Consensus 593 VIlLDEIEKa~~~vq~~Llq~le~G 617 (884)
+|++||+-. .++.. +++++.+|
T Consensus 221 ~ii~gE~r~--~e~~~-~l~a~~~g 242 (308)
T TIGR02788 221 RIILGELRG--DEAFD-FIRAVNTG 242 (308)
T ss_pred eEEEeccCC--HHHHH-HHHHHhcC
Confidence 788999985 55554 57777766
No 329
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.13 E-value=0.068 Score=46.13 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 002758 515 FNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
+.+.|++|+|||+++++|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 330
>PRK06762 hypothetical protein; Provisional
Probab=94.11 E-value=0.068 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHH
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
..++|.|++|+|||++|+.|++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999987
No 331
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=94.09 E-value=0.081 Score=52.69 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=35.1
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcC
Q 002758 481 DWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG 538 (884)
Q Consensus 481 iGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~g 538 (884)
.+|.+|+..|...+.... ..-.++|.+|+|+|||.++-.++..++.
T Consensus 6 ~~Q~~ai~~i~~~~~~~~------------~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 6 PYQQEAIARIINSLENKK------------EERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHHHTTS------------GCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcC------------CCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 468888888888776540 0116999999999999999987776665
No 332
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.07 E-value=0.086 Score=53.85 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAE 534 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe 534 (884)
-++++|.||||||++++.|++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHH
Confidence 378999999999999999993
No 333
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=94.07 E-value=0.16 Score=59.22 Aligned_cols=130 Identities=12% Similarity=0.176 Sum_probs=80.6
Q ss_pred HHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCC--CCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEe
Q 002758 469 WKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDH--HGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICA 546 (884)
Q Consensus 469 lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~--~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~i 546 (884)
...|.+.+.-.|+|+.++.+++.-.+.-. ..+. ++-+=++++.++|.|.||+.|+.|.+.+.+.--++ .
T Consensus 333 yekLa~SiAPEIyGheDVKKaLLLlLVGg---vd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRg---v--- 403 (721)
T KOG0482|consen 333 YEKLAASIAPEIYGHEDVKKALLLLLVGG---VDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRG---V--- 403 (721)
T ss_pred HHHHHHhhchhhccchHHHHHHHHHhhCC---CCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCccc---c---
Confidence 56778888889999999888776554432 1111 22223468999999999999999999988764211 0
Q ss_pred ccCCCCCCCCCCCCccccccccccccccccchHHHHH-------HHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCee
Q 002758 547 DLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVA-------WELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKL 619 (884)
Q Consensus 547 d~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~-------eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l 619 (884)
|.. . .|.. .+|.......+-++ +|+--.-.+|..|||+|||+..-..++-.+||...+
T Consensus 404 ----YTT--G-------rGSS--GVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTI 468 (721)
T KOG0482|consen 404 ----YTT--G-------RGSS--GVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTI 468 (721)
T ss_pred ----eec--C-------CCCC--ccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhh
Confidence 110 0 0000 01100000001111 122222357889999999999999999999998776
Q ss_pred eCC
Q 002758 620 PDS 622 (884)
Q Consensus 620 ~ds 622 (884)
..+
T Consensus 469 SIa 471 (721)
T KOG0482|consen 469 SIA 471 (721)
T ss_pred hhh
Confidence 654
No 334
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.06 E-value=0.053 Score=53.09 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=21.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 002758 515 FNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
++++|++|+|||++|+.||+.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 335
>PRK08233 hypothetical protein; Provisional
Probab=94.02 E-value=0.069 Score=53.81 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
..+.+.|++|+|||++|+.|++.+-. ..++.+|.-
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~--~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKN--SKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC--CceEEECCE
Confidence 47899999999999999999998732 245555543
No 336
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.98 E-value=0.05 Score=55.21 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=25.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
+++.|++|+|||++|+.||+.+ .+++++++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~-----~~~~is~~ 31 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF-----GFTHLSAG 31 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCeEEECC
Confidence 7899999999999999999976 35667765
No 337
>PRK07261 topology modulation protein; Provisional
Probab=93.97 E-value=0.056 Score=55.02 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=25.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
-+++.|++|+|||++|+.|++.+ +.+++.+|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~---~~~~i~~D 32 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY---NCPVLHLD 32 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCCeEecC
Confidence 38899999999999999999875 34455555
No 338
>PRK00625 shikimate kinase; Provisional
Probab=93.77 E-value=0.069 Score=54.68 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=25.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
.++|+|.+|+|||++++.||+.+ +-+|+.+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l---~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL---SLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEhh
Confidence 58999999999999999999988 34444443
No 339
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.73 E-value=0.27 Score=56.47 Aligned_cols=83 Identities=10% Similarity=0.033 Sum_probs=50.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcc-cccccccc-cc--ccccchHHHHHHHHHhC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDS-VQ--FRGKTLADYVAWELLKK 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~-p~gy~G~~-~g--~rgk~~l~~L~eal~~~ 589 (884)
.+++.|++|+|||+++..+|..+.....+++.++..+.. ..+. -....|.. +. +...+.++.+.+.+...
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~------~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESP------EQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCH------HHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 799999999999999999998776555567777654210 0000 00000110 00 01122346677777776
Q ss_pred CCeEEEEcccccc
Q 002758 590 PLSVVYLENVDKA 602 (884)
Q Consensus 590 p~~VIlLDEIEKa 602 (884)
...+|+||+|..+
T Consensus 158 ~~~lVVIDSIq~l 170 (372)
T cd01121 158 KPDLVIIDSIQTV 170 (372)
T ss_pred CCcEEEEcchHHh
Confidence 6789999999654
No 340
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.73 E-value=0.25 Score=52.50 Aligned_cols=37 Identities=8% Similarity=-0.045 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
..+++.|++|+|||.+|.+++......+.+.+.+++.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3789999999999999999876544456667766664
No 341
>PLN02200 adenylate kinase family protein
Probab=93.69 E-value=0.094 Score=56.25 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=29.0
Q ss_pred CCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 509 PRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 509 ~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
.+.+..+++.|+||+|||++|+.||+.+ | +.+++++
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~-g----~~his~g 75 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETF-G----FKHLSAG 75 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh-C----CeEEEcc
Confidence 4556789999999999999999999976 2 4566665
No 342
>PRK06217 hypothetical protein; Validated
Probab=93.67 E-value=0.065 Score=54.83 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
-+++.|++|+|||++|++|++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 343
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.59 E-value=0.46 Score=53.87 Aligned_cols=98 Identities=19% Similarity=0.209 Sum_probs=58.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC-CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s-~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
.+++.|++|+|||++.++|...+... ...+.+.=. +..-...+...+.... ...++-.+.++.+.+..+++.+|.
T Consensus 180 ~ili~G~tGsGKTTll~al~~~i~~~-~riv~iEd~~El~~~~~~~~~l~~r~--~~~~g~~~~t~~~ll~~aLR~~PD- 255 (340)
T TIGR03819 180 AFLISGGTGSGKTTLLSALLALVAPD-ERIVLVEDAAELRPDHPHVVRLEARP--ANVEGAGAVTLTDLVRQALRMRPD- 255 (340)
T ss_pred eEEEECCCCCCHHHHHHHHHccCCCC-CcEEEECCcceecCCCCCeeeEEecc--ccccCcCccCHHHHHHHHhccCCC-
Confidence 79999999999999999998877543 445555422 2110000111111000 000110112455778888888875
Q ss_pred EEEEccccccCHHHHHHHHHHHhCCe
Q 002758 593 VVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 593 VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
+|++-||- ++++.. +++++.+|.
T Consensus 256 ~IivGEiR--g~Ea~~-~l~a~~tGh 278 (340)
T TIGR03819 256 RIVVGEVR--GAEVVD-LLAALNTGH 278 (340)
T ss_pred eEEEeCcC--cHHHHH-HHHHHHcCC
Confidence 67789998 456654 589999884
No 344
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.58 E-value=0.09 Score=54.82 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHH
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
+..+.+.|++|+|||++|++|++.+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999987
No 345
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.54 E-value=0.29 Score=56.69 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=51.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
..++.||-+||||++.+.|.+.+-.. ++.++...... + .... ......+.+. .......
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~---~------------~~~l--~d~~~~~~~~-~~~~~~y 97 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRL---D------------RIEL--LDLLRAYIEL-KEREKSY 97 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhc---c------------hhhH--HHHHHHHHHh-hccCCce
Confidence 69999999999999998888876433 55555442110 0 0000 0000111111 1113468
Q ss_pred EEEccccccCHHHHHHHHHHHhCCee
Q 002758 594 VYLENVDKADVHVQNSLSKAIQTGKL 619 (884)
Q Consensus 594 IlLDEIEKa~~~vq~~Llq~le~G~l 619 (884)
||||||...+ +.+..|..+.+.|..
T Consensus 98 ifLDEIq~v~-~W~~~lk~l~d~~~~ 122 (398)
T COG1373 98 IFLDEIQNVP-DWERALKYLYDRGNL 122 (398)
T ss_pred EEEecccCch-hHHHHHHHHHccccc
Confidence 9999999775 477888888887754
No 346
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.52 E-value=0.061 Score=53.65 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 002758 515 FNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
+++.||+|+|||++|++|++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999987
No 347
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.49 E-value=0.066 Score=55.15 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=25.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
-+++.||||+||+++|+.||+.+ .+.++|-.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~-----~i~hlstg 32 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL-----GLPHLDTG 32 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-----CCcEEcHh
Confidence 48999999999999999999984 45666643
No 348
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.49 E-value=0.072 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 002758 515 FNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
++|.|++|+|||++|+.|++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999999974
No 349
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.48 E-value=0.23 Score=56.38 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+++.|.+|||||.||-.|+..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 79999999999999999999988
No 350
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.40 E-value=0.076 Score=53.89 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=26.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
.++|.|++|+|||++|++|++.+. ..+++++..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~---~~~~~~~~D 36 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA---EPWLHFGVD 36 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC---CCccccCcc
Confidence 699999999999999999999862 345555443
No 351
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.33 E-value=0.11 Score=53.94 Aligned_cols=38 Identities=26% Similarity=0.122 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
+..+.|.|++|+|||++|++|+..++......+.+|..
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d 61 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD 61 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence 34899999999999999999999987665556777643
No 352
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.31 E-value=0.16 Score=55.83 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYG 538 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~g 538 (884)
.+++.||+|+|||++.++|+..+..
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCC
Confidence 6999999999999999999998753
No 353
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.27 E-value=0.12 Score=52.36 Aligned_cols=36 Identities=33% Similarity=0.157 Sum_probs=29.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
.+.|.|++|+|||++|++|+..+...+..++.+|..
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 799999999999999999999986444456666654
No 354
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.25 E-value=0.09 Score=52.22 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=27.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEecc
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 548 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~ 548 (884)
++|.|++|+|||++|+.|++.+.......+.++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 7899999999999999999998644434455553
No 355
>PHA01747 putative ATP-dependent protease
Probab=93.21 E-value=0.28 Score=55.64 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=59.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcc------ccccccccccccccchHHHHH
Q 002758 510 RRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY------HQVVGGDSVQFRGKTLADYVA 583 (884)
Q Consensus 510 k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~------p~gy~G~~~g~rgk~~l~~L~ 583 (884)
|...+++=.||.|||||++-+.+.+.. +... ... ......|+ -.|.+|
T Consensus 188 ~~NyNliELgPRGTGKS~~f~eis~fs-----p~~i--SGG----~~TvA~LFyN~~t~~~GLVg--------------- 241 (425)
T PHA01747 188 KRPVHIIELSNRGTGKTTTFVILQELF-----NFRY--YTE----PPTYANLVYDAKTNALGLVF--------------- 241 (425)
T ss_pred CCCeeEEEecCCCCChhhHHHHhhhcC-----Ccee--eCC----CCchHHheEecCCCceeEEe---------------
Confidence 456789999999999999999886522 0111 000 01111111 011111
Q ss_pred HHHHhCCCeEEEEccccccC----HHHHHHHHHHHhCCeeeCCCCeEee---c-CceEEEEecCC
Q 002758 584 WELLKKPLSVVYLENVDKAD----VHVQNSLSKAIQTGKLPDSYGREVS---V-SNAIFVTASSF 640 (884)
Q Consensus 584 eal~~~p~~VIlLDEIEKa~----~~vq~~Llq~le~G~l~ds~Gr~V~---~-~naI~IlTSN~ 640 (884)
-.-+|.||||.... .++...|+..|+.|.+..+.+...+ + .++=+||.-|.
T Consensus 242 ------~~D~VaFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNi 300 (425)
T PHA01747 242 ------LSNGLIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNP 300 (425)
T ss_pred ------eccEEEEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCC
Confidence 13579999999754 5788999999999999875542111 1 24446776665
No 356
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.18 E-value=0.23 Score=55.40 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=41.1
Q ss_pred HHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 470 KTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 470 k~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
..|...|.+-=..|.+.+..+..++..... ++. ....++|+|.+|+|||++++.||+.+ +-+|+.+|
T Consensus 99 ~~l~~~l~~l~~~~~~~~~~~l~~~~~~~~------~~~--~~~~I~l~G~~GsGKStvg~~La~~L---g~~~id~D 165 (309)
T PRK08154 99 LLIRELLEQASPAQLARVRDALSGMLGAGR------RAA--RRRRIALIGLRGAGKSTLGRMLAARL---GVPFVELN 165 (309)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhhh------hcc--CCCEEEEECCCCCCHHHHHHHHHHHc---CCCEEeHH
Confidence 344444444333344455555555444322 111 12379999999999999999999988 45566444
No 357
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.16 E-value=0.38 Score=53.12 Aligned_cols=114 Identities=12% Similarity=0.109 Sum_probs=66.6
Q ss_pred HHHHHHHhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEecc
Q 002758 469 WKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 548 (884)
Q Consensus 469 lk~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~ 548 (884)
++...+.+.+.+.|....+-.++.++...-... .+-....|-|+|.+++|||+++++.+ .++|....++ .
T Consensus 156 le~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~------l~~~~~~~hl~G~Ss~GKTt~~~~a~-Sv~G~p~~l~---~ 225 (286)
T PF06048_consen 156 LEEWQEMVAALAKGNPRLMLALCAAFAAPLLSL------LGVEGFGFHLYGQSSSGKTTALQLAA-SVWGNPDGLI---R 225 (286)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH------hCCCceEEEEEeCCCCCHHHHHHHhh-hhCcCchhhh---h
Confidence 445555555556666665555544444432211 11223479999999999998887665 5777654111 0
Q ss_pred CCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCC
Q 002758 549 CPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTG 617 (884)
Q Consensus 549 s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G 617 (884)
+ ++ .|. -.|...+......+++|||+..+++.....+.-.|-+|
T Consensus 226 s-----------------------w~-~T~-n~le~~a~~~nd~~l~lDE~~~~~~~~~~~~iY~l~nG 269 (286)
T PF06048_consen 226 S-----------------------WN-STD-NGLERTAAAHNDLPLVLDELSQADPKDVGSIIYMLANG 269 (286)
T ss_pred c-----------------------ch-hhH-HHHHHHHHHcCCcceEehhccccchhHHHHHHHHHhCC
Confidence 0 00 011 12333333344678999999999988666666666555
No 358
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=0.0084 Score=74.47 Aligned_cols=126 Identities=26% Similarity=0.366 Sum_probs=89.1
Q ss_pred cccCCCCCcchhhhhhcCCCCCCCCCcc-cccccChhHHhcccceeeecCCCCHHHHHHHHHHHHHHHHhhhcCCCceEE
Q 002758 731 RNLDLNLPAEEDEVLVLDSDDDRNSDSS-ENTKSWLQDFFNQRVKIVAFKAFNFDALAEKILKDINASFRKTVGSECLLE 809 (884)
Q Consensus 731 ~~lDLNl~~~e~e~~~~~~~~~~~~~~~-~~~~~f~~efl~rID~IVvFkPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~ 809 (884)
.++|||+|++.++..... ....++..+ .....|..++.++++..|.|+|+|++-.++-+.+.|.+.|.+-++..+.++
T Consensus 763 d~i~lf~~l~~~~~~~i~-~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l~e 841 (898)
T KOG1051|consen 763 DELDLNLPLDRDELIEIV-NKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALLGE 841 (898)
T ss_pred ceeeeecccchhhHhhhh-hhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhheee
Confidence 568999999855432221 111111111 112349999999999999999999999999999999999999888777799
Q ss_pred eCHHHHHHHHHhc-cCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Q 002758 810 IDRKVMEQLLAAA-YLSESNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKL 860 (884)
Q Consensus 810 IddeAle~La~~~-~~~~gaR~le~wIE~vl~~~L~~~~~~~~~~~~~~v~L 860 (884)
|+++....|.... |.. +...+..|++.+..+...++ +|.......|++
T Consensus 842 i~~~~~~~i~~~~~~~~-~~e~~~~~l~~~~~~~~~~~--~~~~~~~~~i~~ 890 (898)
T KOG1051|consen 842 VEDGLTERILVADGWSQ-GKEVFQPQLETVKKKVFLEI--KVSKTTSLGIKL 890 (898)
T ss_pred ecCCceEEEEecccccc-chhhhcchhheecccccccc--cccccccccccc
Confidence 9999999998884 775 55556667776666665554 444444444554
No 359
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.00 E-value=0.099 Score=50.57 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 002758 515 FNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
+++.|++|+|||++|+.||+.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987
No 360
>PRK06547 hypothetical protein; Provisional
Probab=92.93 E-value=0.12 Score=52.91 Aligned_cols=24 Identities=33% Similarity=0.234 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHH
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
..+++.|++|+|||++|+.|++.+
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 478888999999999999999985
No 361
>PRK13949 shikimate kinase; Provisional
Probab=92.92 E-value=0.093 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=21.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.++++|++|+|||++++.||+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999988
No 362
>PRK07667 uridine kinase; Provisional
Probab=92.85 E-value=0.23 Score=51.41 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
+.+.+.|++|+|||++|+.|++.+-....+...+++.
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 5899999999999999999999985444454445444
No 363
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.79 E-value=0.12 Score=53.28 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 002758 515 FNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
+.+.||+|+|||++|++|+..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 364
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.68 E-value=0.13 Score=51.65 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=25.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
.++|.|++|+|||++|+.||+.+ +-+|+..|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l---g~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL---GYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEcc
Confidence 58889999999999999999987 33455433
No 365
>PRK14532 adenylate kinase; Provisional
Probab=92.61 E-value=0.12 Score=52.79 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=25.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
.++|.||+|+|||++|+.||+.+ .+.+++++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~-----g~~~is~~ 32 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER-----GMVQLSTG 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCeEEeCc
Confidence 48899999999999999999876 24566654
No 366
>PRK13948 shikimate kinase; Provisional
Probab=92.59 E-value=0.14 Score=52.84 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
..++|.|..|+|||++++.||+.+ +.+|+-.|
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~l---g~~~iD~D 42 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRAL---MLHFIDTD 42 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---CCCEEECC
Confidence 479999999999999999999987 45566444
No 367
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.58 E-value=0.12 Score=55.62 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=26.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
++|.|++|+|||++|++|++.+-.....++.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 789999999999999999998854334455554
No 368
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.57 E-value=0.81 Score=48.30 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=21.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHc--CCCcceEE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIY--GGKENFIC 545 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~--gs~~~fi~ 545 (884)
.+.+.||.|||||.||.+.|-.+. +....++.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii 54 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVKEGEYDKIII 54 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence 699999999999999998886543 33344443
No 369
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.51 E-value=0.6 Score=50.59 Aligned_cols=99 Identities=11% Similarity=0.035 Sum_probs=58.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcccccccccccccccc----chHHHHHHHHHhC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGK----TLADYVAWELLKK 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk----~~l~~L~eal~~~ 589 (884)
.+.++|+-|+|||.+.|++.+.+-++....+.+|-...... .....++ ... +......-. .....|.+.+.+.
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~-~~~~ai~-~~l-~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDA-TLLEAIV-ADL-ESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHH-HHHHHHH-HHh-ccCccchhHHHHHHHHHHHHHHHHhC
Confidence 69999999999999999999888766655555553321110 0000000 000 001110000 1123455555555
Q ss_pred CC-eEEEEccccccCHHHHHHHHHHHh
Q 002758 590 PL-SVVYLENVDKADVHVQNSLSKAIQ 615 (884)
Q Consensus 590 p~-~VIlLDEIEKa~~~vq~~Llq~le 615 (884)
.+ -++++||.+.+...+...|..+.+
T Consensus 130 ~r~v~l~vdEah~L~~~~le~Lrll~n 156 (269)
T COG3267 130 KRPVVLMVDEAHDLNDSALEALRLLTN 156 (269)
T ss_pred CCCeEEeehhHhhhChhHHHHHHHHHh
Confidence 55 689999999999999888766654
No 370
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.50 E-value=0.15 Score=53.32 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHc
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
...+.+.||+|+|||+++++|+..+-
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999998874
No 371
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.46 E-value=0.17 Score=50.99 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=30.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
.++|.|++|+|||+++..+|..+......++.+|+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 5889999999999999999988765556677777664
No 372
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.44 E-value=0.39 Score=58.09 Aligned_cols=73 Identities=19% Similarity=0.142 Sum_probs=45.2
Q ss_pred HHHHHHhhccCccchHH-HHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcC-CCcceEEec
Q 002758 470 KTLFRALTEKIDWQDEA-ISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYG-GKENFICAD 547 (884)
Q Consensus 470 k~L~~~L~~~ViGQ~eA-i~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~g-s~~~fi~id 547 (884)
..+.+.|.+-..=-+.. -++|+..+..... .+ .+....++|+|.+|+|||++|++||+.+.. .+.+++.+|
T Consensus 356 t~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~---~r----~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD 428 (568)
T PRK05537 356 TELRRRLREGLEIPEWFSFPEVVAELRRTYP---PR----HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLD 428 (568)
T ss_pred HHHHHHHHCCCCCChhhcHHHHHHHHHHHhc---cc----cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeC
Confidence 45555666543323322 2455554444322 11 123457999999999999999999999864 444566676
Q ss_pred cC
Q 002758 548 LC 549 (884)
Q Consensus 548 ~s 549 (884)
..
T Consensus 429 ~D 430 (568)
T PRK05537 429 GD 430 (568)
T ss_pred Cc
Confidence 55
No 373
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=92.32 E-value=0.3 Score=54.30 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=37.2
Q ss_pred ccCccchHHHHHHHHHHHHHhcCCCCCC------CCCCCCceEEEEEcCCCCchHHHHHHHHHHH
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHH------GASPRRDIWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 478 ~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~------~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+++.+++.-+.+..++.........++ -...+.++.+++.|++|+|||++|..||+.+
T Consensus 52 ~~~i~~~el~~~V~~~L~~~~~~~~~~~y~~~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 52 IKEITKEELRRRVYYKLIEKDYEEVAEKYLLWRRIRKSKEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEeeHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4566666665555555544321100000 0001346789999999999999999999988
No 374
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=92.25 E-value=0.42 Score=59.48 Aligned_cols=92 Identities=17% Similarity=0.096 Sum_probs=51.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCC--cceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHH-------H
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGK--ENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVA-------W 584 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~--~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~-------e 584 (884)
.+++.|++|||||+++++|.+.+-... ..++-+.-+... ...+- +..|. ...|+...|. .
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~A-----A~~L~--e~~g~----~a~Tih~lL~~~~~~~~~ 408 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRA-----AKRLG--EVTGL----TASTIHRLLGYGPDTFRH 408 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHH-----HHHHH--HhcCC----ccccHHHHhhccCCccch
Confidence 699999999999999999988775332 222222211000 00000 00010 0011111110 0
Q ss_pred HHH--hCCCeEEEEccccccCHHHHHHHHHHHhC
Q 002758 585 ELL--KKPLSVVYLENVDKADVHVQNSLSKAIQT 616 (884)
Q Consensus 585 al~--~~p~~VIlLDEIEKa~~~vq~~Llq~le~ 616 (884)
... ..+..+|++||+-.++......|++++..
T Consensus 409 ~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~ 442 (720)
T TIGR01448 409 NHLEDPIDCDLLIVDESSMMDTWLALSLLAALPD 442 (720)
T ss_pred hhhhccccCCEEEEeccccCCHHHHHHHHHhCCC
Confidence 001 12457999999999999999999887754
No 375
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=92.24 E-value=0.28 Score=52.17 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHcCC
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIYGG 539 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~gs 539 (884)
+..+.|.||+|+|||++++.|+..+...
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4589999999999999999999988543
No 376
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.23 E-value=0.12 Score=52.42 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHc
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
++++.||+|+|||+++++|+..+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999999864
No 377
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.22 E-value=0.46 Score=55.85 Aligned_cols=83 Identities=8% Similarity=0.056 Sum_probs=50.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcc-ccccccccc-c--ccccchHHHHHHHHHhC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSV-Q--FRGKTLADYVAWELLKK 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~-p~gy~G~~~-g--~rgk~~l~~L~eal~~~ 589 (884)
.+++.|++|+|||+++..+|..+-....++++++..+.. ..+. -....|.+. . +...+.+..+.+.+.+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~------~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESA------SQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccH------HHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 799999999999999999988775445567777654210 0000 000001100 0 01112245677777766
Q ss_pred CCeEEEEcccccc
Q 002758 590 PLSVVYLENVDKA 602 (884)
Q Consensus 590 p~~VIlLDEIEKa 602 (884)
...+|+||.|..+
T Consensus 156 ~~~lVVIDSIq~l 168 (446)
T PRK11823 156 KPDLVVIDSIQTM 168 (446)
T ss_pred CCCEEEEechhhh
Confidence 6789999999754
No 378
>PRK14530 adenylate kinase; Provisional
Probab=92.16 E-value=0.15 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.201 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.++|.||+|+|||++|+.||+.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 379
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.15 E-value=0.17 Score=54.12 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
.-+++.||+|+||+++|+.||+.+ .+.+++++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~-----g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKE-----NLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCcEEECC
Confidence 459999999999999999999986 24455555
No 380
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.15 E-value=0.15 Score=52.07 Aligned_cols=30 Identities=23% Similarity=0.154 Sum_probs=24.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
+++.|++|+|||++|+.||+.+ .+..+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~-----~~~~i~~~ 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-----GLPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCeEEECc
Confidence 7899999999999999999975 24555554
No 381
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.14 E-value=0.16 Score=51.75 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=25.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
.++|.|++|+|||++|+.||+.+ +-+++..|
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l---~~~~vd~D 36 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL---NMEFYDSD 36 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc---CCcEEECC
Confidence 69999999999999999999986 34455444
No 382
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.11 E-value=0.26 Score=51.70 Aligned_cols=26 Identities=4% Similarity=-0.084 Sum_probs=20.8
Q ss_pred CCeEEEEccccccCHHHHHHHHHHHh
Q 002758 590 PLSVVYLENVDKADVHVQNSLSKAIQ 615 (884)
Q Consensus 590 p~~VIlLDEIEKa~~~vq~~Llq~le 615 (884)
+..+++|||+-.+++.....|+....
T Consensus 62 ~~~~liiDE~~~~~~g~l~~l~~~~~ 87 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGYLLLLLSLSP 87 (234)
T ss_pred cCCEEEEeccccCChHHHHHHHhhcc
Confidence 47899999999999988777655444
No 383
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.07 E-value=0.3 Score=48.03 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHH
Q 002758 485 EAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 485 eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
+....++..+..+.. ....++|.|+.|+|||++++.+++.+
T Consensus 6 ~~t~~l~~~l~~~l~-----------~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD-----------FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCC-----------CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344566666655421 11279999999999999999999987
No 384
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.04 E-value=0.13 Score=52.01 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=21.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+++.||+|+|||++|+.|++.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999876
No 385
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=92.01 E-value=0.19 Score=53.23 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=25.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
.+++.||||+|||.+|-+||+.. +-++|..|--
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~---g~pvI~~Dri 35 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKT---GAPVISLDRI 35 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH-----EEEEE-SG
T ss_pred EEEEECCCCCChhHHHHHHHHHh---CCCEEEecce
Confidence 68999999999999999999988 5577777743
No 386
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.00 E-value=0.18 Score=51.06 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=27.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
+++.||+|+|||.+|..++......+.+++.+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 78999999999999998877665555666666543
No 387
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=91.98 E-value=0.52 Score=58.84 Aligned_cols=91 Identities=16% Similarity=0.058 Sum_probs=51.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHH----HhC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL----LKK 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal----~~~ 589 (884)
.+++.|++|||||++++++.+.+-..+..++.+-.+... ...+ .+ ..+....|+...+...- .-.
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~A------a~~L-~~----~~g~~a~Ti~~~~~~~~~~~~~~~ 438 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKA------AEGL-QA----ESGIESRTLASLEYAWANGRDLLS 438 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHH------HHHH-Hh----ccCCceeeHHHHHhhhccCcccCC
Confidence 689999999999999999987764434344333211100 0000 00 00111112211111110 012
Q ss_pred CCeEEEEccccccCHHHHHHHHHHHh
Q 002758 590 PLSVVYLENVDKADVHVQNSLSKAIQ 615 (884)
Q Consensus 590 p~~VIlLDEIEKa~~~vq~~Llq~le 615 (884)
+..||++||+-.++......|++...
T Consensus 439 ~~~llIvDEasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 439 DKDVLVIDEAGMVGSRQMARVLKEAE 464 (744)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHHH
Confidence 45799999999999988888877554
No 388
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.95 E-value=0.45 Score=46.96 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=54.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcccccccc-ccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGG-DSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G-~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
.+.+.||+|+|||++.++|+..+--.... |.+|.. ..+ +|+. ...| ....=.|+.++..+| .
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~~~---------~~i---~~~~~lS~G---~~~rv~laral~~~p-~ 90 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGST---------VKI---GYFEQLSGG---EKMRLALAKLLLENP-N 90 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceE-EEECCe---------EEE---EEEccCCHH---HHHHHHHHHHHhcCC-C
Confidence 68999999999999999998865322222 233311 000 1110 1111 111124566776665 7
Q ss_pred EEEEcccc-ccCHHHHHHHHHHHhC
Q 002758 593 VVYLENVD-KADVHVQNSLSKAIQT 616 (884)
Q Consensus 593 VIlLDEIE-Ka~~~vq~~Llq~le~ 616 (884)
|+++||-. .+|+..+..|.+++.+
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKE 115 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99999987 6899999999988874
No 389
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=91.92 E-value=0.19 Score=52.51 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHc--CCCcceEEeccCCCCCCCCCCCCcc-cccccccc--ccccccchHHHHHHH--
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIY--GGKENFICADLCPQDGEMNNPPKFY-HQVVGGDS--VQFRGKTLADYVAWE-- 585 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~--gs~~~fi~id~s~~~~e~~~~s~L~-p~gy~G~~--~g~rgk~~l~~L~ea-- 585 (884)
.+++|.||+|+|||+.+-.||..+- +..--++.+|.-.... ...|- -.+..|.. .-.........+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga----~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGA----VEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHH----HHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccH----HHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3799999999999998877776554 3333455555331100 01110 00000000 000000011222233
Q ss_pred -HHhCCCeEEEEccccccCH--HHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCcc
Q 002758 586 -LLKKPLSVVYLENVDKADV--HVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643 (884)
Q Consensus 586 -l~~~p~~VIlLDEIEKa~~--~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~ 643 (884)
...+..-+||||=..+.+. .....|.++++.- .-.++++|+.++.+.+
T Consensus 78 ~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~----------~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL----------NPDEVHLVLSATMGQE 128 (196)
T ss_dssp HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH----------SSSEEEEEEEGGGGGH
T ss_pred HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc----------CCccceEEEecccChH
Confidence 3345567999999987763 3445555555432 1124678888876544
No 390
>PRK13764 ATPase; Provisional
Probab=91.91 E-value=0.68 Score=56.20 Aligned_cols=34 Identities=24% Similarity=0.130 Sum_probs=26.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
.+|+.||+|+|||+++++|++.+...+..++.+.
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE 292 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFYADMGKIVKTME 292 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC
Confidence 5999999999999999999998864443333543
No 391
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=91.88 E-value=0.96 Score=50.26 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=70.7
Q ss_pred HhhccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCC
Q 002758 475 ALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGE 554 (884)
Q Consensus 475 ~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e 554 (884)
-|.+-..+..+.+..+-+.+..+..+.. +....++|+|+.|.||+++...|..+ +|... +.+..+..
T Consensus 46 ~L~~~~~~d~~~~~~l~~~lg~~L~~~~-------~~~~~~~l~G~g~nGKStl~~~l~~l-~G~~~--~~~~~~~~--- 112 (304)
T TIGR01613 46 FLLETFGGDNELIEYLQRVIGYSLTGNY-------TEQKLFFLYGNGGNGKSTFQNLLSNL-LGDYA--TTAVASLK--- 112 (304)
T ss_pred HHHHHhCCCHHHHHHHHHHHhHHhcCCC-------CceEEEEEECCCCCcHHHHHHHHHHH-hChhh--ccCCcchh---
Confidence 3444444555566666666666655321 22347999999999999999988655 56532 11111100
Q ss_pred CCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeCC--CCeEeecC-c
Q 002758 555 MNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS--YGREVSVS-N 631 (884)
Q Consensus 555 ~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~ds--~Gr~V~~~-n 631 (884)
+ ..+.+. .| .++ .+. ...++++||+++-.....+.|+.+.....++-. +...+.+. .
T Consensus 113 -------~-~~~~~~--~f-------~~a-~l~--gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~ 172 (304)
T TIGR01613 113 -------M-NEFQEH--RF-------GLA-RLE--GKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPK 172 (304)
T ss_pred -------h-hhccCC--Cc-------hhh-hhc--CCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEe
Confidence 0 000000 11 111 122 246899999986544444556666543344321 12334443 4
Q ss_pred eEEEEecCC
Q 002758 632 AIFVTASSF 640 (884)
Q Consensus 632 aI~IlTSN~ 640 (884)
+.+|++||-
T Consensus 173 ~~~i~~tN~ 181 (304)
T TIGR01613 173 FTLVQSTNH 181 (304)
T ss_pred eEEEEEcCC
Confidence 668888885
No 392
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.82 E-value=0.17 Score=51.29 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=24.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFI 544 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi 544 (884)
.+.|.|++|+|||++++.|++.+-..+..++
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~ 32 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVV 32 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4789999999999999999999853333333
No 393
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=91.81 E-value=2.3 Score=46.14 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHH
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAE 534 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe 534 (884)
+..++|.|.+|+||+.++.+|..
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg 53 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFG 53 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999988765
No 394
>PF13245 AAA_19: Part of AAA domain
Probab=91.80 E-value=0.22 Score=44.17 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=17.2
Q ss_pred EEEEEcCCCCchHH-HHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRK-IAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~-LA~aLAe~L 536 (884)
.+++.||+|+|||+ ++..+++.+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 57789999999995 555555555
No 395
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=91.74 E-value=0.23 Score=51.35 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYG 538 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~g 538 (884)
.+.+.||+|+|||++|++|+..+-.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3678999999999999999999853
No 396
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.73 E-value=0.15 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
+++|+|+.|+|||++.++||+.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHc
Confidence 69999999999999999999998
No 397
>PRK13946 shikimate kinase; Provisional
Probab=91.63 E-value=0.17 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.++|.|.+|+|||++|+.||+.+
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999988
No 398
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.60 E-value=0.24 Score=51.43 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
..++++||+|+|||.+|..++......+...+.++..
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4799999999999999999998876666778888865
No 399
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.51 E-value=0.26 Score=50.89 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
..++.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58999999999998777666666
No 400
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.45 E-value=0.26 Score=50.36 Aligned_cols=38 Identities=24% Similarity=0.116 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
...+.|.|++|+|||++|++|+..+.......+.++..
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d 55 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD 55 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh
Confidence 34899999999999999999999886444445666543
No 401
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.38 E-value=0.61 Score=47.98 Aligned_cols=89 Identities=18% Similarity=0.149 Sum_probs=53.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
.+.+.||+|+|||+|.+.|+..+...... |.++.... . .+++.. ....| ....=.++.++...| .+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i-------~-~~~q~~-~LSgG---q~qrv~laral~~~p-~l 92 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDN-DEWDGITP-------V-YKPQYI-DLSGG---ELQRVAIAAALLRNA-TF 92 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcE-EEECCEEE-------E-EEcccC-CCCHH---HHHHHHHHHHHhcCC-CE
Confidence 79999999999999999999876433222 33331100 0 000100 00111 111124556666665 89
Q ss_pred EEEcccc-ccCHHHHHHHHHHHhC
Q 002758 594 VYLENVD-KADVHVQNSLSKAIQT 616 (884)
Q Consensus 594 IlLDEIE-Ka~~~vq~~Llq~le~ 616 (884)
+++||-- -+|+..+..+.+.|.+
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHH
Confidence 9999987 5788888888888864
No 402
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=91.33 E-value=0.22 Score=55.72 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
..+++.||+|+|||++|..||+.+- ..+|..|
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~---~~iis~D 36 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLN---GEIISAD 36 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCC---CcEEecc
Confidence 3799999999999999999999872 3455555
No 403
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=91.33 E-value=0.98 Score=55.16 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=24.1
Q ss_pred CeEEEEccccccCHHHHHHHHHHHhCC
Q 002758 591 LSVVYLENVDKADVHVQNSLSKAIQTG 617 (884)
Q Consensus 591 ~~VIlLDEIEKa~~~vq~~Llq~le~G 617 (884)
..||++||.-..+......|++++..+
T Consensus 266 ~dvlIvDEaSMvd~~lm~~ll~al~~~ 292 (615)
T PRK10875 266 LDVLVVDEASMVDLPMMARLIDALPPH 292 (615)
T ss_pred CCeEEEChHhcccHHHHHHHHHhcccC
Confidence 479999999999999999999998753
No 404
>PRK02496 adk adenylate kinase; Provisional
Probab=91.20 E-value=0.19 Score=51.21 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.++|.||+|+|||++|+.||+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999986
No 405
>PRK14531 adenylate kinase; Provisional
Probab=91.14 E-value=0.18 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=21.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+++.||||+|||++++.||+.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999986
No 406
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=91.11 E-value=0.58 Score=56.86 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=24.4
Q ss_pred CCeEEEEccccccCHHHHHHHHHHHhCC
Q 002758 590 PLSVVYLENVDKADVHVQNSLSKAIQTG 617 (884)
Q Consensus 590 p~~VIlLDEIEKa~~~vq~~Llq~le~G 617 (884)
+..||++||+-.++......|++++..+
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al~~~ 286 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKALPPN 286 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhcCCC
Confidence 4579999999999999999999988643
No 407
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=91.04 E-value=0.9 Score=50.46 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHc
Q 002758 510 RRDIWFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 510 k~~~~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
+.+..+.+.||+|+|||++|+.|+..+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999998874
No 408
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.03 E-value=0.23 Score=50.94 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=27.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
+.+.|++|+|||++|+.|++.+-....+...|.+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~D 36 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLD 36 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehh
Confidence 68999999999999999999884333344555554
No 409
>PRK14527 adenylate kinase; Provisional
Probab=91.00 E-value=0.21 Score=51.38 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHH
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
..++|.||+|+|||++|+.||+.+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999876
No 410
>PRK13975 thymidylate kinase; Provisional
Probab=91.00 E-value=0.19 Score=51.60 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHc
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
.+.|.|++|+|||++|+.||+.+-
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999983
No 411
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=90.94 E-value=1.1 Score=56.37 Aligned_cols=121 Identities=15% Similarity=0.158 Sum_probs=58.8
Q ss_pred EEEEEcCCCCchHH-HHHHHHHHHcCCCcceEEeccCCCCCC--CCCCCCcc---cccccccccccccc----ch-----
Q 002758 514 WFNFTGPDLCGKRK-IAIALAEIIYGGKENFICADLCPQDGE--MNNPPKFY---HQVVGGDSVQFRGK----TL----- 578 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~-LA~aLAe~L~gs~~~fi~id~s~~~~e--~~~~s~L~---p~gy~G~~~g~rgk----~~----- 578 (884)
++++.||+|+|||+ +-+.|.+..++....++...-.....- ...+..-+ +.+.+||...|-.+ |.
T Consensus 67 vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mT 146 (845)
T COG1643 67 VVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMT 146 (845)
T ss_pred EEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEec
Confidence 79999999999987 445555555543333332211100000 00000000 12334554433221 11
Q ss_pred HHHHHHHHHh----CCCeEEEEccccc--cCHHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCCCcc
Q 002758 579 ADYVAWELLK----KPLSVVYLENVDK--ADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVED 643 (884)
Q Consensus 579 l~~L~eal~~----~p~~VIlLDEIEK--a~~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~g~~ 643 (884)
-|.|...+.. ..+++|+|||++. ++.++.-.|+.-+-..+- -+++ ||||+.++..+
T Consensus 147 dGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr-------~DLK--iIimSATld~~ 208 (845)
T COG1643 147 DGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR-------DDLK--LIIMSATLDAE 208 (845)
T ss_pred cHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC-------CCce--EEEEecccCHH
Confidence 2556666653 3478999999985 444444444443332221 1233 57777776544
No 412
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.90 E-value=0.9 Score=50.40 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=61.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCC-CcceEEeccC-CCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGG-KENFICADLC-PQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPL 591 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs-~~~fi~id~s-~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~ 591 (884)
-+|..||+|+||++..-++-..+... ....+.|.=. +|- +.+..+|+.+.-+|.+. ..|...|..|+++.|
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~v--h~skkslI~QREvG~dT----~sF~~aLraALReDP- 199 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYV--HESKKSLINQREVGRDT----LSFANALRAALREDP- 199 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhh--hcchHhhhhHHHhcccH----HHHHHHHHHHhhcCC-
Confidence 69999999999988776666666433 2333444322 110 01122333332223222 235567888888886
Q ss_pred eEEEEccccccCHHHHHHHHHHHhCCeeeC
Q 002758 592 SVVYLENVDKADVHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 592 ~VIlLDEIEKa~~~vq~~Llq~le~G~l~d 621 (884)
-|||+=|+- |.+....-+.+-|+|.+..
T Consensus 200 DVIlvGEmR--D~ETi~~ALtAAETGHLV~ 227 (353)
T COG2805 200 DVILVGEMR--DLETIRLALTAAETGHLVF 227 (353)
T ss_pred CEEEEeccc--cHHHHHHHHHHHhcCCEEE
Confidence 688888874 6788888899999997653
No 413
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=90.86 E-value=1.3 Score=47.83 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHHcCCC
Q 002758 511 RDIWFNFTGPDLCGKRKIAIALAEIIYGGK 540 (884)
Q Consensus 511 ~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~ 540 (884)
.+..+++.|++|+|||.+.+.|-..+....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f 41 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKF 41 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccC
Confidence 456799999999999999998877664433
No 414
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=90.80 E-value=0.25 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHc
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
+.+.||+|+|||++|+.|+..+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56889999999999999999884
No 415
>PRK00279 adk adenylate kinase; Reviewed
Probab=90.75 E-value=0.23 Score=52.11 Aligned_cols=31 Identities=23% Similarity=0.140 Sum_probs=25.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
.+++.||+|+|||++|+.||+.+ .+.+++++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~-----~~~~is~~ 32 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY-----GIPHISTG 32 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEECC
Confidence 38999999999999999999986 24556654
No 416
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=90.73 E-value=0.26 Score=54.85 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=25.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
.+++.||||+|||.||-.||+. ++ .+|..|
T Consensus 6 ii~I~GpTasGKS~LAl~LA~~-~~---eIIsaD 35 (300)
T PRK14729 6 IVFIFGPTAVGKSNILFHFPKG-KA---EIINVD 35 (300)
T ss_pred EEEEECCCccCHHHHHHHHHHh-CC---cEEecc
Confidence 7999999999999999999998 43 466666
No 417
>PLN02165 adenylate isopentenyltransferase
Probab=90.69 E-value=0.24 Score=55.79 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHc
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
.+++.||+|+|||++|.+||+.+.
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcC
Confidence 699999999999999999999873
No 418
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.68 E-value=0.19 Score=52.78 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=23.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGK 540 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~ 540 (884)
-++|.|+||+|||++|+.||+.|-...
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 489999999999999999999995443
No 419
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=90.67 E-value=0.97 Score=47.00 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHc
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
.+++.||.|+|||++.+.|+...+
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~~ 54 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAVL 54 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHHH
Confidence 699999999999999999996553
No 420
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=90.65 E-value=0.19 Score=63.18 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=51.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHH---H-HHHHhC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYV---A-WELLKK 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L---~-eal~~~ 589 (884)
|+++.||+|+|||..|.+.|..+ +..++.+|-+...........+. ...+ . ....+.. . ......
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~---g~~v~E~Nas~~RSk~~l~~~~~--~~~~---s---~si~~~~~~~~~~~~~~~ 427 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKEL---GFKVVEKNASDVRSKKELLNKLG--NATS---S---HSIKGSKKKKGNRQSLNS 427 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhc---ccceeecCccccccccHHHhhhh--cccc---c---cchhhhhccccccccccc
Confidence 68999999999999999999987 44667777653211000000100 0000 0 0000111 0 001124
Q ss_pred CCeEEEEccccccCH---HHHHHHHHHHh
Q 002758 590 PLSVVYLENVDKADV---HVQNSLSKAIQ 615 (884)
Q Consensus 590 p~~VIlLDEIEKa~~---~vq~~Llq~le 615 (884)
.+.||+|||||=+.. ..+..|.+++.
T Consensus 428 ~~~vil~devD~~~~~dRg~v~~l~~l~~ 456 (871)
T KOG1968|consen 428 DHFLILMDEVDGMFGEDRGGVSKLSSLCK 456 (871)
T ss_pred ceeEEEEeccccccchhhhhHHHHHHHHH
Confidence 466999999997765 55666666666
No 421
>PRK14528 adenylate kinase; Provisional
Probab=90.53 E-value=0.3 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+++.||+|+|||++|+.||+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 422
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=90.46 E-value=0.36 Score=50.83 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=31.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
..+++.|++|+|||.+|..+|......+.+.+.++..
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4899999999999999999998776556777888765
No 423
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.45 E-value=1.1 Score=51.72 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
-.++|.||+|+|||+++..||..+...+..+..+++..
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 47999999999999999999987755555555566553
No 424
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=90.37 E-value=0.28 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+-+.||+|+|||++|+.||+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 47789999999999999999988
No 425
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.35 E-value=0.37 Score=50.48 Aligned_cols=36 Identities=31% Similarity=0.276 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEecc
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 548 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~ 548 (884)
..+++.|++|+|||++|..+|..+...+.+.+.++.
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 479999999999999999999887666667777764
No 426
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.34 E-value=0.27 Score=51.52 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEI 535 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~ 535 (884)
..++|.||+|+|||+|+++|.+.
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhc
Confidence 47999999999999999999765
No 427
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.31 E-value=0.8 Score=54.24 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHH
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
-+++|+||+|+|||+++..||..+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 389999999999999999999766
No 428
>COG1485 Predicted ATPase [General function prediction only]
Probab=90.29 E-value=1.1 Score=50.67 Aligned_cols=161 Identities=12% Similarity=0.090 Sum_probs=82.8
Q ss_pred HHHHHHhhccCccchHHHHHHHHHHHHHhcCCCC--CCCC-----CCC---CceEEEEEcCCCCchHHHHHHHHHHHcCC
Q 002758 470 KTLFRALTEKIDWQDEAISVISQTIAQRRTGHED--HHGA-----SPR---RDIWFNFTGPDLCGKRKIAIALAEIIYGG 539 (884)
Q Consensus 470 k~L~~~L~~~ViGQ~eAi~~Ia~aI~~~rsg~~~--~~~p-----~~k---~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs 539 (884)
..+.+.+...-+..|.+-..++.++.++...+.. ..++ -+| ..--+.|+|+-|.|||.|--..-+.+-+.
T Consensus 13 ~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~ 92 (367)
T COG1485 13 ERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGE 92 (367)
T ss_pred HHHHHhcccCCCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCcc
Confidence 3444445555455566666666666555331110 0011 000 12249999999999999988777766443
Q ss_pred CcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHH---HHHHHHHHHhC
Q 002758 540 KENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVH---VQNSLSKAIQT 616 (884)
Q Consensus 540 ~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~---vq~~Llq~le~ 616 (884)
...=+++.--.. +.|. .+. ...|.. ..+..++..+.++ ..|+.|||++=-|.. +...|+.+|=.
T Consensus 93 ~k~R~HFh~FM~--~vH~--~l~--~l~g~~------dpl~~iA~~~~~~-~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~ 159 (367)
T COG1485 93 RKRRLHFHRFMA--RVHQ--RLH--TLQGQT------DPLPPIADELAAE-TRVLCFDEFEVTDIADAMILGRLLEALFA 159 (367)
T ss_pred ccccccHHHHHH--HHHH--HHH--HHcCCC------CccHHHHHHHHhc-CCEEEeeeeeecChHHHHHHHHHHHHHHH
Confidence 322122110000 0000 000 001111 1234566666554 689999999876654 44444444321
Q ss_pred CeeeCCCCeEeecCceEEEEecCCCccccccccccccCCchhHHHH
Q 002758 617 GKLPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIY 662 (884)
Q Consensus 617 G~l~ds~Gr~V~~~naI~IlTSN~g~~~~~~~~~~~~~~fseeki~ 662 (884)
+++++|+|||...++.- ..++.-|+.+
T Consensus 160 -------------~GV~lvaTSN~~P~~LY------~dGlqR~~FL 186 (367)
T COG1485 160 -------------RGVVLVATSNTAPDNLY------KDGLQRERFL 186 (367)
T ss_pred -------------CCcEEEEeCCCChHHhc------ccchhHHhhH
Confidence 24669999999877642 3355555544
No 429
>PRK15453 phosphoribulokinase; Provisional
Probab=90.25 E-value=0.66 Score=51.25 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
..+.+.|.+|+|||++|++|++.+-........+++.
T Consensus 6 piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D 42 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGD 42 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecc
Confidence 3799999999999999999998774333334445544
No 430
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.24 E-value=0.25 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=21.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.++|.||+|+|||++++.|+..+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 79999999999999999999865
No 431
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.18 E-value=0.2 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.++|.||+|+|||+++++|+..+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999875
No 432
>PRK05439 pantothenate kinase; Provisional
Probab=90.16 E-value=1.1 Score=50.16 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHHc
Q 002758 511 RDIWFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 511 ~~~~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
.+..+.+.|++|+|||++|+.|++.+-
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999773
No 433
>PLN02924 thymidylate kinase
Probab=90.11 E-value=0.48 Score=50.43 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCC
Q 002758 500 GHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGK 540 (884)
Q Consensus 500 g~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~ 540 (884)
|+..+.++.. ...-+.|.|.+|+|||++++.|++.+-..+
T Consensus 5 ~~~~~~~~~~-~g~~IviEGiDGsGKsTq~~~L~~~l~~~g 44 (220)
T PLN02924 5 GMETESSVES-RGALIVLEGLDRSGKSTQCAKLVSFLKGLG 44 (220)
T ss_pred ccCCCCCcCC-CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 5666666553 345799999999999999999999985433
No 434
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=90.10 E-value=0.35 Score=50.24 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=28.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 510 RRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 510 k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
..+..+++.|++|+|||+++..+...+. ...++.||...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~ 51 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADE 51 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHH
Confidence 3466899999999999999999988764 45678888664
No 435
>PLN02840 tRNA dimethylallyltransferase
Probab=90.03 E-value=0.38 Score=55.90 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEecc
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 548 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~ 548 (884)
..+++.||+|+|||++|..||+.+. ..+|.+|.
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~---~~iis~Ds 54 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLN---GEIISADS 54 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCC---CCeEeccc
Confidence 4799999999999999999999983 34666663
No 436
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=90.02 E-value=0.59 Score=51.59 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=48.3
Q ss_pred hccCccchHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 477 TEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 477 ~~~ViGQ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
.+-.+||-.|-++..-.+.-.+.|-- ..-.+|+.|++|+|||.+|-.+|+.| |...+|..|..++
T Consensus 39 s~GmVGQ~~AR~Aagvi~kmi~egki--------aGraiLiaG~pgtGKtAiAmg~sksL-G~~tpF~~i~gSE 103 (454)
T KOG2680|consen 39 SEGMVGQVKARKAAGVILKMIREGKI--------AGRAILIAGQPGTGKTAIAMGMSKSL-GDDTPFTSISGSE 103 (454)
T ss_pred cccchhhHHHHHHhHHHHHHHHcCcc--------cceEEEEecCCCCCceeeeeehhhhh-CCCCceeeeecce
Confidence 45689998887665554444444210 12279999999999999999999998 6678899888774
No 437
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=89.95 E-value=0.4 Score=41.04 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=25.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGK 540 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~ 540 (884)
..+|.|++|+|||+|..||.-.|++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 699999999999999999999998765
No 438
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=89.95 E-value=0.82 Score=49.64 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYG 538 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~g 538 (884)
.+++.||+|+|||++++.|++.+..
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 5999999999999999999987753
No 439
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=89.89 E-value=1.4 Score=53.52 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=61.9
Q ss_pred hHHhcccceeeec-CCCCHHHHHHHHHHHHHHHHhhhcCCCceEEeCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Q 002758 766 QDFFNQRVKIVAF-KAFNFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGFL 844 (884)
Q Consensus 766 ~efl~rID~IVvF-kPLd~e~L~eIi~~~L~~~~~~l~g~gi~L~IddeAle~La~~~~~~~gaR~le~wIE~vl~~~L~ 844 (884)
.+|.+.+|..|.| ..++..+. +.+.+.++.+.+=++.. .+++++-+++++..+.- +.|-+++|+.++-.--|.
T Consensus 387 ~~~~~~~~~~~~l~~~~~~RD~-~aV~kt~SgllKLl~P~---~~~~~ee~e~~l~~Ale--~RrrVkeQl~~i~~~ef~ 460 (675)
T TIGR02653 387 RSFADAIDRFFKLGNNLNQRDV-IAVRKTVSGLLKLLYPD---GEYTKDDVRECLTYAME--GRRRVKEQLKKLGGFEFF 460 (675)
T ss_pred hhHHHHHHhhEecCCCCchhhH-HHHHHHHHHHHHHhCCC---CCCCHHHHHHHHHHHHH--HHHHHHHHHHhcCCceec
Confidence 3567778888888 45554442 22334444444433443 45888889998887664 668899999887666788
Q ss_pred HHHHhcCCCCCcEEEEEeec
Q 002758 845 DAQEKYNLTANSIVKLVACE 864 (884)
Q Consensus 845 ~~~~~~~~~~~~~v~L~~~~ 864 (884)
++...|-......-+.|.+.
T Consensus 461 ~~~fsy~~~~~~~e~~v~~p 480 (675)
T TIGR02653 461 DVNFSYIDNESLEEFFVSVP 480 (675)
T ss_pred cceeeeEEcCCCcEEEEecC
Confidence 88888865555677777776
No 440
>PLN02674 adenylate kinase
Probab=89.85 E-value=0.51 Score=51.09 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=26.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
.++|.||||+||+++|+.||+.+ .+.+|+++
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~-----~~~his~G 63 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEY-----CLCHLATG 63 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-----CCcEEchh
Confidence 58999999999999999999976 35666665
No 441
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=89.82 E-value=0.35 Score=49.51 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=23.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYG 538 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~g 538 (884)
.+.|.|++|+|||++++.|++.+-.
T Consensus 5 ~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999854
No 442
>PRK00698 tmk thymidylate kinase; Validated
Probab=89.78 E-value=0.33 Score=49.96 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHc
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
..+.|.|++|+|||++++.|++.+-
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999874
No 443
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=89.70 E-value=1 Score=47.65 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEI 535 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~ 535 (884)
.++|.||.|+|||++.+.++..
T Consensus 31 ~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 6899999999999999999854
No 444
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=89.64 E-value=0.57 Score=60.36 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=54.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHH----HhC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL----LKK 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal----~~~ 589 (884)
..++.|+.|+|||++.+++.+.+-..+..++-+-.+-.. ...| ....|....|+...+...- .-.
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkA-----A~~L------~e~~Gi~a~TIas~ll~~~~~~~~l~ 467 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKA-----AEGL------EKEAGIQSRTLSSWELRWNQGRDQLD 467 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHH-----HHHH------HHhhCCCeeeHHHHHhhhccCccCCC
Confidence 689999999999999999988775444444433222100 0000 0001111223222211110 012
Q ss_pred CCeEEEEccccccCHHHHHHHHHHHhC
Q 002758 590 PLSVVYLENVDKADVHVQNSLSKAIQT 616 (884)
Q Consensus 590 p~~VIlLDEIEKa~~~vq~~Llq~le~ 616 (884)
+..||+|||+-.++...+..|++.++.
T Consensus 468 ~~~vlVIDEAsMv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 468 NKTVFVLDEAGMVASRQMALFVEAVTR 494 (1102)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHHHh
Confidence 357999999999999999999998863
No 445
>PF05609 LAP1C: Lamina-associated polypeptide 1C (LAP1C); InterPro: IPR008662 This entry contains Rattus norvegicus LAP1C proteins and several uncharacterised highly related sequences from both Mus sp. and humans. Lamina-associated polypeptide 1s (LAP1s), also known as Torsin-1A-interacting protein 1, are type 2 integral membrane proteins with a single membrane-spanning region of the inner nuclear membrane []. LAP1s bind to both A- and B-type lamins and have a putative role in the membrane attachment and assembly of the nuclear lamina [].
Probab=89.63 E-value=3.6 Score=48.39 Aligned_cols=146 Identities=10% Similarity=0.065 Sum_probs=89.4
Q ss_pred hHhHHHHHHHhhccCccchHHH-HHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHH--HHHHHHHHHcC-CCc
Q 002758 466 LSNWKTLFRALTEKIDWQDEAI-SVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRK--IAIALAEIIYG-GKE 541 (884)
Q Consensus 466 ~e~lk~L~~~L~~~ViGQ~eAi-~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~--LA~aLAe~L~g-s~~ 541 (884)
.+.|....+.|+.+..+|++-. ..+...+..+..+...+. .+.+|||.+..+.=+|. ||..||..+-- ...
T Consensus 247 ~~~f~~~~~~Lk~~fp~Q~~~lW~~~~~~l~~hln~~~pr~-----qPavlll~a~~~a~~tl~cLa~~lA~ays~~~~~ 321 (465)
T PF05609_consen 247 LENFQDQIEQLKDKFPSQDEELWKRSRTFLEKHLNASHPRT-----QPAVLLLTAAQDAERTLRCLAEQLADAYSSFRDV 321 (465)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCCCC-----CCeEEEEecCCCcchHHHHHHHHHHHHHhhhcCC
Confidence 4467777788899999998654 555555555543222222 35689999887666653 45555554321 123
Q ss_pred ceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeEEEEccccccCHHHHHHHHHHHhCCeeeC
Q 002758 542 NFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 542 ~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~VIlLDEIEKa~~~vq~~Llq~le~G~l~d 621 (884)
..+.||...+.. .+....-..+-..|..++... ..+.++-.+|++++..--.|.++.+.
T Consensus 322 ~~~~Idg~~~~~---------------~dsd~vK~~vD~~l~~~f~~~-~~aavv~~~e~lpp~stlify~YCD~----- 380 (465)
T PF05609_consen 322 SAIRIDGADKAH---------------QDSDQVKLEVDNELSSGFENG-QKAAVVHRFESLPPGSTLIFYKYCDH----- 380 (465)
T ss_pred ceEEecCccccc---------------cChHHHHHHHHHHHHHHhhCC-CeeEEeehhhhCCCchhHHHHHhccC-----
Confidence 456677553211 011100011224555556554 45666799999999999999888875
Q ss_pred CCCeEeecCceEEEEecCC
Q 002758 622 SYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 622 s~Gr~V~~~naI~IlTSN~ 640 (884)
...-|+|+.+|||--+
T Consensus 381 ---enA~fK~~alilTv~l 396 (465)
T PF05609_consen 381 ---ENAAFKDVALILTVLL 396 (465)
T ss_pred ---CCccccceEEEEEEEe
Confidence 2366889999999765
No 446
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=89.63 E-value=0.24 Score=50.11 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=21.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.++|.||+|+|||++++.|++..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999999865
No 447
>PHA02624 large T antigen; Provisional
Probab=89.61 E-value=0.53 Score=56.74 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=24.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGG 539 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs 539 (884)
.++|+||+|+|||+++.+|++.+.|.
T Consensus 433 ~il~~GPpnTGKTtf~~sLl~~L~G~ 458 (647)
T PHA02624 433 YWLFKGPVNSGKTTLAAALLDLCGGK 458 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 89999999999999999999999664
No 448
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=89.58 E-value=0.3 Score=48.24 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=23.6
Q ss_pred EEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 517 FTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 517 f~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
+.||||+||+++|+.||+.. .|++|++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~-----~~~~is~~ 28 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY-----GLVHISVG 28 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH-----TSEEEEHH
T ss_pred CcCCCCCChHHHHHHHHHhc-----CcceechH
Confidence 57999999999999999986 35777655
No 449
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=89.53 E-value=0.3 Score=53.71 Aligned_cols=32 Identities=16% Similarity=-0.052 Sum_probs=25.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
.++|.|++|+|||++|+.|++.+- .++.++..
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D 35 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP----KAVNVNRD 35 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC----CCEEEecc
Confidence 688999999999999999999862 34555543
No 450
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=89.38 E-value=0.28 Score=51.30 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=24.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
+++.||+|+||+++|+.||+.+ .+.+++++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~-----g~~~is~g 31 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY-----GLPHISTG 31 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCCeeehh
Confidence 7889999999999999999875 24555544
No 451
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=89.38 E-value=0.41 Score=53.43 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=27.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
.+++.|||++|||.+|-+||+.+- ..+|.+|
T Consensus 5 ~i~I~GPTAsGKT~lai~LAk~~~---~eIIs~D 35 (308)
T COG0324 5 LIVIAGPTASGKTALAIALAKRLG---GEIISLD 35 (308)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcC---CcEEecc
Confidence 699999999999999999999984 3567766
No 452
>PLN02199 shikimate kinase
Probab=89.32 E-value=0.87 Score=50.63 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=25.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
.++|+|..|+|||++++.||+.+ +.+|+-.|
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~L---g~~fIDtD 134 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVL---GYTFFDCD 134 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEehH
Confidence 69999999999999999999987 44555433
No 453
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=89.26 E-value=0.3 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 002758 515 FNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
+++.||+|+|||++++.|++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6789999999999999999865
No 454
>PRK04040 adenylate kinase; Provisional
Probab=89.21 E-value=0.37 Score=49.94 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHH
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
..+++.|++|+|||++++.|++.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999987
No 455
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.16 E-value=1.3 Score=43.89 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=54.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcccccccccccccc-ccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFR-GKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~r-gk~~l~~L~eal~~~p~~ 592 (884)
.+.+.|++|+|||++.++|+..+.-... -+.++-..... ...... ....++...+. |....=.++.++... ..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~~G-~i~~~~~~~~~--~~~~~~--~~~i~~~~qlS~G~~~r~~l~~~l~~~-~~ 100 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPTSG-EILIDGKDIAK--LPLEEL--RRRIGYVPQLSGGQRQRVALARALLLN-PD 100 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEccc--CCHHHH--HhceEEEeeCCHHHHHHHHHHHHHhcC-CC
Confidence 7899999999999999999976632221 13333221000 000000 00011110010 111112345555555 48
Q ss_pred EEEEcccc-ccCHHHHHHHHHHHhC
Q 002758 593 VVYLENVD-KADVHVQNSLSKAIQT 616 (884)
Q Consensus 593 VIlLDEIE-Ka~~~vq~~Llq~le~ 616 (884)
++++||.. .+|......|.++|..
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999998 6888888888888874
No 456
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=89.08 E-value=0.36 Score=53.43 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=25.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEecc
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 548 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~ 548 (884)
+++.||+|+|||.+|..||+.+. ..+|.+|-
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~---~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLN---AEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCC---CcEEEech
Confidence 78999999999999999999873 34666663
No 457
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=89.08 E-value=0.86 Score=45.82 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=55.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcccccccccccccc-ccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFR-GKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~r-gk~~l~~L~eal~~~p~~ 592 (884)
.+.+.||+|+|||+|.+.|+..+.-.... +.++-..... ....... ...+++...+- |....=.++.++-.+| .
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~--~~~~~~~-~~~i~~~~qLS~G~~qrl~laral~~~p-~ 102 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKEVSF--ASPRDAR-RAGIAMVYQLSVGERQMVEIARALARNA-R 102 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCc--CCHHHHH-hcCeEEEEecCHHHHHHHHHHHHHhcCC-C
Confidence 79999999999999999999876432222 3343221100 0000000 00111111110 1111124556666665 8
Q ss_pred EEEEcccc-ccCHHHHHHHHHHHhC
Q 002758 593 VVYLENVD-KADVHVQNSLSKAIQT 616 (884)
Q Consensus 593 VIlLDEIE-Ka~~~vq~~Llq~le~ 616 (884)
|+++||-- .+|+..+..+.++|.+
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHH
Confidence 99999987 5789988888888874
No 458
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=88.99 E-value=1.1 Score=54.95 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=23.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFI 544 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi 544 (884)
.++++||||||||+++.++...+...+..++
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VL 205 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQLVKRGLRVL 205 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 5889999999999998888777654444443
No 459
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.95 E-value=0.71 Score=54.42 Aligned_cols=83 Identities=7% Similarity=0.014 Sum_probs=49.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccc-ccccccccc---ccccchHHHHHHHHHhC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYH-QVVGGDSVQ---FRGKTLADYVAWELLKK 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p-~gy~G~~~g---~rgk~~l~~L~eal~~~ 589 (884)
.+++.|++|+|||+++..+|..+.......++++.-+.. ..+.. ..-.|.... +...+..+.+.+++.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~------~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESL------QQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCH------HHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 799999999999999999988775544566666643210 00000 000011100 01112346777777776
Q ss_pred CCeEEEEcccccc
Q 002758 590 PLSVVYLENVDKA 602 (884)
Q Consensus 590 p~~VIlLDEIEKa 602 (884)
...+|+||.|.-+
T Consensus 170 ~~~~vVIDSIq~l 182 (454)
T TIGR00416 170 NPQACVIDSIQTL 182 (454)
T ss_pred CCcEEEEecchhh
Confidence 6789999998644
No 460
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=88.94 E-value=0.53 Score=50.02 Aligned_cols=36 Identities=28% Similarity=0.232 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
.+.+.+.|++|+|||++|+.|++.+-+....+|+.|
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D 43 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLD 43 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecc
Confidence 368999999999999999999998854433344433
No 461
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=88.81 E-value=0.34 Score=48.41 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=18.1
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 002758 515 FNFTGPDLCGKRKIAIALAEI 535 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~ 535 (884)
+.|.|++|+|||+|+++|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999988
No 462
>PRK04182 cytidylate kinase; Provisional
Probab=88.77 E-value=0.36 Score=48.37 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+++.|++|+|||++|++||+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999987
No 463
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=88.74 E-value=1.7 Score=49.21 Aligned_cols=96 Identities=20% Similarity=0.146 Sum_probs=59.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC-CCCCCCCCCCCcc--ccccccccccccccchHHHHHHHHHhCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC-PQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKP 590 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s-~~~~e~~~~s~L~--p~gy~G~~~g~rgk~~l~~L~eal~~~p 590 (884)
.+|+.|-+|+|||+|+.+|+..+--.+ ..|.|.=+ +..-.-.+.-.|. |+.. +|..-.+..+.+..+++..|
T Consensus 175 NILisGGTGSGKTTlLNal~~~i~~~e-RvItiEDtaELql~~ph~vrL~TR~~n~----Eg~gevtm~dLvkn~LRmRP 249 (355)
T COG4962 175 NILISGGTGSGKTTLLNALSGFIDSDE-RVITIEDTAELQLAHPHVVRLETRPPNV----EGTGEVTMRDLVKNALRMRP 249 (355)
T ss_pred eEEEeCCCCCCHHHHHHHHHhcCCCcc-cEEEEeehhhhccCCCceEEEeecCCCC----CCcceEEHHHHHHHHhhcCc
Confidence 699999999999999999998775444 67766433 2111001122222 3332 22112355677788999999
Q ss_pred CeEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 591 LSVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 591 ~~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
..||+- ||-- +++. .|+++|.+|.
T Consensus 250 DRIiVG-EVRG--~Ea~-dLL~AmnTGH 273 (355)
T COG4962 250 DRIIVG-EVRG--VEAL-DLLQAMNTGH 273 (355)
T ss_pred cceEEE-EecC--ccHH-HHHHHhccCC
Confidence 887754 4432 2232 4689999884
No 464
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=88.73 E-value=0.56 Score=41.20 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=27.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
+++.|..|+|||+++..||..+-..+.+.+.+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 678899999999999999999865555656555
No 465
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.67 E-value=1.5 Score=46.01 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHc
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
.+++.||.|.|||++.+.++...+
T Consensus 31 ~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 31 FHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999998876553
No 466
>PF12846 AAA_10: AAA-like domain
Probab=88.63 E-value=0.47 Score=51.20 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=32.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
++++.|++|+|||++++.+...+...+..++.+|..
T Consensus 3 h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 799999999999999999999888888888888865
No 467
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.53 E-value=0.4 Score=49.59 Aligned_cols=24 Identities=29% Similarity=0.151 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHH
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
..++|.||+|+||++|+++|.+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 479999999999999999998754
No 468
>PTZ00301 uridine kinase; Provisional
Probab=88.46 E-value=0.51 Score=49.89 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHH
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
..+.+.|++|+|||++|+.|++.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 478999999999999999999876
No 469
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=88.36 E-value=1.4 Score=48.54 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=58.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCeE
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSV 593 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~V 593 (884)
.+.|+||+++||+.||.+|+..+ ..+-.++..... + .+..- ....+
T Consensus 115 ti~~~Gp~~tGKt~la~aI~~~~----~~~G~vn~~n~n--F------------~f~d~----------------~~k~l 160 (271)
T PF01057_consen 115 TIWFYGPASTGKTNLADAIANAV----PNYGCVNWNNNN--F------------PFQDC----------------FNKRL 160 (271)
T ss_dssp EEEEESTTTSSHCHCHHCCCHHS----CCEEEEECTTTC--C------------CCCCC----------------CCECE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhC----CcccEeccCCCC--C------------Chhhh----------------hhccE
Confidence 69999999999999999999876 223334433110 0 00000 12357
Q ss_pred EEEccccccCHHHHHHHHHHHhCCeeeC--CCCeEeecCceEEEEecCC
Q 002758 594 VYLENVDKADVHVQNSLSKAIQTGKLPD--SYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 594 IlLDEIEKa~~~vq~~Llq~le~G~l~d--s~Gr~V~~~naI~IlTSN~ 640 (884)
+..||. .+.+..-+.+..++....+.- .......+..+=+|+|||.
T Consensus 161 ~~weE~-~~~~~~ve~~K~ilgG~~v~vd~K~k~~~~~~~tPviItsn~ 208 (271)
T PF01057_consen 161 IWWEEP-NMYPDEVETAKMILGGTPVRVDVKNKDSEELERTPVIITSNN 208 (271)
T ss_dssp EECTCG-GCCTTCHHHHHHCCTTSEEEEEETTTEEEEEEEEEEEEEECC
T ss_pred EEeccc-CccHHHHHHHHHHhCCCceEeecccCCceEecCCceEEEecc
Confidence 888888 566666677777776554443 3345666666767888885
No 470
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=88.25 E-value=0.6 Score=50.77 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
..+++.|++|+|||.+|..+|......+.+.+.+++-
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4799999999999999998877554445555555543
No 471
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=88.23 E-value=0.75 Score=46.96 Aligned_cols=32 Identities=22% Similarity=0.098 Sum_probs=24.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
+|+.|++|+|||.+|..++.. ...+.+++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc
Confidence 688999999999999999876 23456666544
No 472
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=88.22 E-value=0.42 Score=47.59 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+.+.|++|+|||++|+.||+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999976
No 473
>PRK12338 hypothetical protein; Provisional
Probab=88.15 E-value=0.44 Score=53.47 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHH
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
+..+++.|++|+|||++|++||+.+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 4589999999999999999999987
No 474
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=88.13 E-value=1.1 Score=52.63 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=27.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEecc
Q 002758 511 RDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 548 (884)
Q Consensus 511 ~~~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~ 548 (884)
.+..++|.|++|+|||++|..||..+.- ..++..|.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~--~~ii~tD~ 289 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGI--TRIVSTDA 289 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC--cEEeehhH
Confidence 3568999999999999999999998732 22445554
No 475
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=87.86 E-value=0.51 Score=49.08 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 002758 515 FNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
+.+.|++|+|||++|+.|++.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6788999999999999999986
No 476
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=87.80 E-value=0.46 Score=48.66 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.+.+.|++|+|||+++++|+..+
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 477
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=87.80 E-value=1.6 Score=43.79 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHc
Q 002758 484 DEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 484 ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
.++...++..+.+... ...+++|.|+=|.|||+++|.|++.+.
T Consensus 8 ~~~t~~lg~~l~~~l~-----------~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 8 EEATLALGERLAEALK-----------AGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred HHHHHHHHHHHHhhCC-----------CCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 3455666666665432 123899999999999999999999985
No 478
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=87.78 E-value=0.53 Score=50.71 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=25.3
Q ss_pred EEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 517 FTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 517 f~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
..||+|+|||++++++.+.+...+.+.+.+|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 479999999999999999998777777777776
No 479
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=87.75 E-value=2.2 Score=42.77 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=52.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCC---cc-ccccccccccccccchHHHHHHHHHhC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPK---FY-HQVVGGDSVQFRGKTLADYVAWELLKK 589 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~---L~-p~gy~G~~~g~rgk~~l~~L~eal~~~ 589 (884)
..++.||.|+||+.+.++++-.++.....+.+-+-. .......... ++ ..++ ..+ ....-.+..++...
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~i~~~~~l---S~G---~~~~~~la~~L~~~ 95 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGV-KAGCIVAAVSAELIFTRLQL---SGG---EKELSALALILALA 95 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcc-cCCCcceeeEEEEehheeec---ccc---HHHHHHHHHHHHhc
Confidence 689999999999999999887776544222220000 0000000000 00 0011 111 11223556666542
Q ss_pred ---CCeEEEEccccc-cCHHHHHHHHHHHhC
Q 002758 590 ---PLSVVYLENVDK-ADVHVQNSLSKAIQT 616 (884)
Q Consensus 590 ---p~~VIlLDEIEK-a~~~vq~~Llq~le~ 616 (884)
+..+++|||+.. .|+.-...+.+++.+
T Consensus 96 ~~~~~~llllDEp~~gld~~~~~~l~~~l~~ 126 (162)
T cd03227 96 SLKPRPLYILDEIDRGLDPRDGQALAEAILE 126 (162)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 568999999986 477766667666653
No 480
>PRK13973 thymidylate kinase; Provisional
Probab=87.74 E-value=0.58 Score=49.25 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=26.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICA 546 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~i 546 (884)
-+.|.|++|+|||+.++.|++.+-..+..++.+
T Consensus 5 ~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 5 FITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 688999999999999999999986554444433
No 481
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=87.70 E-value=0.52 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.034 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHH
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
..+++.|.+|+|||++|+.||+.+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999999985
No 482
>PRK14526 adenylate kinase; Provisional
Probab=87.51 E-value=0.47 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.++|.||+|+||+++|+.||+.+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999875
No 483
>PLN02459 probable adenylate kinase
Probab=87.45 E-value=0.75 Score=50.27 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
..++|.||||+||+++|+.||+.+ .+.++.++
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~-----~~~~is~g 61 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLL-----GVPHIATG 61 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeCc
Confidence 357888999999999999999976 24556554
No 484
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.34 E-value=5.8 Score=44.53 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=57.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCC--Ccc-ccccccccccccccchHHHHHHHHHhCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPP--KFY-HQVVGGDSVQFRGKTLADYVAWELLKKP 590 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s--~L~-p~gy~G~~~g~rgk~~l~~L~eal~~~p 590 (884)
.++++|++|+|||++-.+|...+ .....++.+.-...-. ..+.+ .++ -++..+ + ...+..+.|..+++.+|
T Consensus 145 siii~G~t~sGKTt~lnall~~I-p~~~rivtIEdt~E~~-~~~~n~~~l~~r~~~~~---~-~~v~~~dll~aalR~rP 218 (312)
T COG0630 145 SIIICGGTASGKTTLLNALLDFI-PPEERIVTIEDTPELK-LPHENWVQLVTREGESG---S-SEVSLEDLLRAALRQRP 218 (312)
T ss_pred cEEEECCCCCCHHHHHHHHHHhC-CchhcEEEEecccccc-CCCCCEEEEEecCCCCC---c-cccCHHHHHHHHHhcCC
Confidence 59999999999999999998876 3445666665432100 01111 111 000000 0 01234577888888887
Q ss_pred CeEEEEccccccCHHHHHHHHHHHhCCe
Q 002758 591 LSVVYLENVDKADVHVQNSLSKAIQTGK 618 (884)
Q Consensus 591 ~~VIlLDEIEKa~~~vq~~Llq~le~G~ 618 (884)
. -|++.|+. -.-...+++++.+|.
T Consensus 219 d-~IivgEvr---g~e~~~~~~a~~tGh 242 (312)
T COG0630 219 D-YIIVGELR---GREAFVLFQAMQTGH 242 (312)
T ss_pred C-eEEEeeee---cHHHHHHHHHHhcCC
Confidence 5 45578875 233577899999886
No 485
>PRK14529 adenylate kinase; Provisional
Probab=87.22 E-value=0.5 Score=50.47 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.++|.||+|+||+++|+.||+.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999987
No 486
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=87.22 E-value=1.7 Score=45.21 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAE 534 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe 534 (884)
.++|.||.|+|||++.+.|+.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 699999999999999999884
No 487
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=87.20 E-value=0.86 Score=46.01 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHH
Q 002758 512 DIWFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 512 ~~~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
.-++++.|++|+||++++++|++.+
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l 36 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEEL 36 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHh
Confidence 3489999999999999999999998
No 488
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=87.19 E-value=1.5 Score=48.13 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=26.4
Q ss_pred EEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccC
Q 002758 515 FNFTGPDLCGKRKIAIALAEIIYGGKENFICADLC 549 (884)
Q Consensus 515 lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s 549 (884)
+.+.|++|+|||+++++|++.+...+.....|+..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D 36 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGD 36 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecc
Confidence 56899999999999999999885433344445544
No 489
>PLN02796 D-glycerate 3-kinase
Probab=87.13 E-value=1.8 Score=49.17 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHHc
Q 002758 511 RDIWFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 511 ~~~~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
.++.+.+.|++|+|||+++++|+..+-
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 356899999999999999999998874
No 490
>PRK13768 GTPase; Provisional
Probab=87.11 E-value=0.75 Score=49.90 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=30.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCP 550 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~ 550 (884)
.+++.|++|+|||+++..++..+...+.+.+.+|+..
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 6889999999999999999998876666777777653
No 491
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=87.01 E-value=0.68 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHH
Q 002758 514 WFNFTGPDLCGKRKIAIALAEII 536 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L 536 (884)
+++|.|+=|+|||+++|.|++.+
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 89999999999999999999988
No 492
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.91 E-value=2.5 Score=46.55 Aligned_cols=98 Identities=11% Similarity=0.051 Sum_probs=53.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEeccCCCCCCCCCCCCcc-ccccccccccccccchHHHHHHHH---Hh-
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNNPPKFY-HQVVGGDSVQFRGKTLADYVAWEL---LK- 588 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~s~~~~e~~~~s~L~-p~gy~G~~~g~rgk~~l~~L~eal---~~- 588 (884)
.++|.|++|+|||++++.|+..+.........+++..+.. .....+. ..+..++... ...+ ...+.+++ ..
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri--~~~~ql~~~~~~~~~~~~-~~~~-~~~l~~~l~~l~~~ 152 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRI--GTVQQLQDYVKTIGFEVI-AVRD-EAAMTRALTYFKEE 152 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCH--HHHHHHHHHhhhcCceEE-ecCC-HHHHHHHHHHHHhc
Confidence 7999999999999999999988765444444455432210 0000110 0000011100 0000 12333333 22
Q ss_pred CCCeEEEEccccccC--HHHHHHHHHHHh
Q 002758 589 KPLSVVYLENVDKAD--VHVQNSLSKAIQ 615 (884)
Q Consensus 589 ~p~~VIlLDEIEKa~--~~vq~~Llq~le 615 (884)
....+|+||-..+.+ ......|.++++
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 357899999999885 555666666665
No 493
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=86.88 E-value=2.6 Score=50.99 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=21.8
Q ss_pred EEEEEcCCCCchHH-HHHHHHHHHcCCCc
Q 002758 514 WFNFTGPDLCGKRK-IAIALAEIIYGGKE 541 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~-LA~aLAe~L~gs~~ 541 (884)
++++.|++|+|||+ +-+-|++.-|....
T Consensus 68 vlIviGeTGsGKSTQipQyL~eaG~~~~g 96 (674)
T KOG0922|consen 68 VLIVIGETGSGKSTQIPQYLAEAGFASSG 96 (674)
T ss_pred EEEEEcCCCCCccccHhHHHHhcccccCC
Confidence 79999999999976 66777777665543
No 494
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=86.69 E-value=1.6 Score=44.65 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=24.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCCCcceEEec
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGGKENFICAD 547 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id 547 (884)
.+++.|++|+|||++|..++..+ ..+++++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~ia 33 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIA 33 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEeCc
Confidence 58999999999999999999875 23445554
No 495
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.66 E-value=2 Score=51.49 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=26.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcCC--CcceEEeccC
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYGG--KENFICADLC 549 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~gs--~~~fi~id~s 549 (884)
.+.|+||+|+|||+++..||..+... ...+..+++.
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD 389 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD 389 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 78999999999999999998765322 2344445544
No 496
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=86.60 E-value=0.93 Score=47.80 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHHcCCCcceEEecc
Q 002758 513 IWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADL 548 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe~L~gs~~~fi~id~ 548 (884)
..+++.|++|+|||++|..++........+.+.++.
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 379999999999999999877544444455555554
No 497
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=86.59 E-value=7.6 Score=43.66 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 002758 513 IWFNFTGPDLCGKRKIAIALAE 534 (884)
Q Consensus 513 ~~lLf~Gp~GvGKT~LA~aLAe 534 (884)
..+++.|.+|+||+.++.+|-.
T Consensus 39 ~rIllvGktGVGKSSliNsIlG 60 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIG 60 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999887653
No 498
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=86.53 E-value=0.89 Score=54.69 Aligned_cols=106 Identities=21% Similarity=0.191 Sum_probs=59.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHcC-CCcceEEeccCCCCCCCCCCCCccccccccccccccccchHHHHHHHHHhCCCe
Q 002758 514 WFNFTGPDLCGKRKIAIALAEIIYG-GKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLS 592 (884)
Q Consensus 514 ~lLf~Gp~GvGKT~LA~aLAe~L~g-s~~~fi~id~s~~~~e~~~~s~L~p~gy~G~~~g~rgk~~l~~L~eal~~~p~~ 592 (884)
.-|+.||||||||....+|--.|.. ...+++.+.-+ -..++.|++.+.++.-.
T Consensus 427 lsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApS--------------------------NiAVDqLaeKIh~tgLK 480 (935)
T KOG1802|consen 427 LSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPS--------------------------NIAVDQLAEKIHKTGLK 480 (935)
T ss_pred ceeeecCCCCCceehhHHHHHHHHHhcCCceEEEccc--------------------------chhHHHHHHHHHhcCce
Confidence 4689999999999877665554432 22333333222 01347778877776555
Q ss_pred EEEE---------------------ccccccCHHHHHHHHHHHhCCeeeCCCCe----------EeecCceEEEEecCCC
Q 002758 593 VVYL---------------------ENVDKADVHVQNSLSKAIQTGKLPDSYGR----------EVSVSNAIFVTASSFV 641 (884)
Q Consensus 593 VIlL---------------------DEIEKa~~~vq~~Llq~le~G~l~ds~Gr----------~V~~~naI~IlTSN~g 641 (884)
||-| -.+++ ++.|..+..-=|.|.+..+.-. .--+.++=||++|++|
T Consensus 481 VvRl~aksRE~~~S~vs~L~lh~~~~~~~~--pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~ 558 (935)
T KOG1802|consen 481 VVRLCAKSREDIESDVSFLSLHEQLRNMDK--PELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVG 558 (935)
T ss_pred EeeeehhhhhhccCCccHHHHHHHHhccCc--HHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEeccc
Confidence 5422 11222 4555554444444555433210 0123456699999999
Q ss_pred cccccc
Q 002758 642 EDARIL 647 (884)
Q Consensus 642 ~~~~~~ 647 (884)
++...+
T Consensus 559 Agd~rl 564 (935)
T KOG1802|consen 559 AGDRRL 564 (935)
T ss_pred ccchhh
Confidence 887643
No 499
>PRK10646 ADP-binding protein; Provisional
Probab=86.53 E-value=1.4 Score=44.45 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEEEcCCCCchHHHHHHHHHHHc
Q 002758 484 DEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIY 537 (884)
Q Consensus 484 ~eAi~~Ia~aI~~~rsg~~~~~~p~~k~~~~lLf~Gp~GvGKT~LA~aLAe~L~ 537 (884)
.+....++..+..+.. ...+++|.|.=|+|||+++|+|++.+.
T Consensus 11 ~~~t~~l~~~la~~l~-----------~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 11 EQATLDLGARVAKACD-----------GATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred HHHHHHHHHHHHHhCC-----------CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3455667777765432 112799999999999999999999983
No 500
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=86.38 E-value=0.84 Score=53.28 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=35.3
Q ss_pred CeEEEEccccccC---HHHHHHHHHHHhCCeeeCCCCeEeecCceEEEEecCC
Q 002758 591 LSVVYLENVDKAD---VHVQNSLSKAIQTGKLPDSYGREVSVSNAIFVTASSF 640 (884)
Q Consensus 591 ~~VIlLDEIEKa~---~~vq~~Llq~le~G~l~ds~Gr~V~~~naI~IlTSN~ 640 (884)
+-+|.||||.... ++..+.|+..|+.|.++.+. +-...++=+||.-|.
T Consensus 260 ~D~VafDEv~~i~f~d~d~i~imK~YMesG~fsRG~--~~i~a~as~vf~GNi 310 (457)
T PF13337_consen 260 WDVVAFDEVAGIKFKDKDEIQIMKDYMESGSFSRGK--EEINADASMVFVGNI 310 (457)
T ss_pred ccEEEEEeccCcccCChHHHHHHHHHHhccceeecc--cccccceeEEEEcCc
Confidence 4589999998764 66679999999999998643 222344557777775
Done!