Query 002758
Match_columns 884
No_of_seqs 285 out of 2451
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 17:43:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002758.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1473-1477//hhsearch_pdb/002758hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r6b_X CLPA protein; AAA+, N-t 1.0 1 1 275.7 30.0 292 464-865 444-738 (758)
2 1qvr_A CLPB protein; coiled co 1.0 1 1 273.2 27.1 292 465-862 545-839 (854)
3 3pxi_A Negative regulator of g 1.0 1 1 261.9 25.1 269 465-865 478-747 (758)
4 4fcw_A Chaperone protein CLPB; 1.0 1 1 229.7 28.3 295 465-865 4-301 (311)
5 3hws_A ATP-dependent CLP prote 1.0 1 1 203.1 14.5 290 468-849 5-329 (363)
6 1um8_A ATP-dependent CLP prote 1.0 1 1 181.5 24.5 292 466-849 9-346 (376)
7 1g41_A Heat shock protein HSLU 1.0 1 1 160.7 22.9 87 763-849 318-414 (444)
8 1ofh_A ATP-dependent HSL prote 1.0 1 1 155.2 23.6 244 468-846 5-277 (310)
9 3m6a_A ATP-dependent protease 1.0 1 1 146.9 18.1 233 473-848 76-321 (543)
10 1ojl_A Transcriptional regulat 1.0 1 1 140.3 15.4 225 478-840 2-233 (304)
No 1
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=1.00 E-value=1 Score=275.65 Aligned_cols=292 Identities=19% Similarity=0.217 Sum_probs=239.8
Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 00576999999961637562689999999999985488888999999861899973799806899999999973999623
Q 002758 464 FDLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 543 (884)
Q Consensus 464 ~d~e~lk~L~~~L~~~ViGQ~~Ai~~I~~aI~~~rsg~~~~~~p~~k~~~~lLl~Gp~GvGKt~lAraLAe~l~gs~~~f 543 (884)
-+...+..+.+.|.+.|+||++++..|..++...+.|+..+.+|.+ ++||+||+|+|||++|++||+.+ ..+|
T Consensus 444 ~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~----~~ll~G~~GtGKT~la~~la~~l---~~~~ 516 (758)
T 1r6b_X 444 SDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVG----SFLFAGPTGVGKTEVTVQLSKAL---GIEL 516 (758)
T ss_dssp SHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSE----EEEEECSTTSSHHHHHHHHHHHH---TCEE
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCE----EEEEECCCCCCHHHHHHHHHHHH---CCCE
T ss_conf 5899999999999865067899999999999999644677888765----89987899976999999999984---5777
Q ss_pred EEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEEC
Q ss_conf 9940688888889999743--45556665554320117799999970897089983302469999999998772781307
Q 002758 544 ICADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPD 621 (884)
Q Consensus 544 i~Idls~~~~~~~~~~sl~--p~g~~G~~e~~rgkt~~~~l~~al~~~P~~VIllDEIEka~~~vq~~Ll~ale~G~l~d 621 (884)
++++|+.+.. .+..+.++ |++|+|++++ +.+.++++..|++||||||||++++.+++.|+++|++|++++
T Consensus 517 ~~i~~s~~~~-~~~~~~l~g~~~g~~g~~~~-------~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~ 588 (758)
T 1r6b_X 517 LRFDMSEYME-RHTVSRLIGAPPGYVGFDQG-------GLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTD 588 (758)
T ss_dssp EEEEGGGCSS-SSCCSSSCCCCSCSHHHHHT-------THHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred EEEECHHHCC-HHHHHHHCCCCCCCCCCCCC-------CHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEC
T ss_conf 9986145210-44576643899877675655-------248999995799489990821039899999999864757982
Q ss_pred CCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99928634861999903888422246555466774157999863112254201000023443323334333332134444
Q 002758 622 SYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLL 701 (884)
Q Consensus 622 ~~Gr~V~l~naIiIlTsn~g~~~~~~~~~~~~~~f~Eeki~~~k~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~ 701 (884)
..|+.++++|++||+|+|.+..... . .+.+|..+
T Consensus 589 ~~g~~~~~~~~~iI~tsN~~~~~~~--~--~~~g~~~~------------------------------------------ 622 (758)
T 1r6b_X 589 NNGRKADFRNVVLVMTTNAGVRETE--R--KSIGLIHQ------------------------------------------ 622 (758)
T ss_dssp TTTEEEECTTEEEEEEECSSCC----------------------------------------------------------
T ss_pred CCCCEEECCCEEEEEECCCCHHHHH--H--CCCCCCCC------------------------------------------
T ss_conf 8997772587389982475524443--2--24676541------------------------------------------
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCC
Q ss_conf 34320378999988761688875217988656789971012221037888878873000036726774053303424899
Q 002758 702 NKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAF 781 (884)
Q Consensus 702 ~kRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~iVvFkPL 781 (884)
.. ......+....|.++|++|+|.+|.|.|+
T Consensus 623 -~~------------------------------------------------~~~~~~~~~~~~~~~l~~R~~~~i~~~~l 653 (758)
T 1r6b_X 623 -DN------------------------------------------------STDAMEEIKKIFTPEFRNRLDNIIWFDHL 653 (758)
T ss_dssp ------------------------------------------------------CHHHHHHHSCHHHHTTCSEEEECCCC
T ss_pred -CH------------------------------------------------HHHHHHHHHHHCCHHHHHHCCCCEEECCC
T ss_conf -06------------------------------------------------78899999875599999637840464799
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 999999999999999996641898368817999999998603988-8189999999999999999997248789948999
Q 002758 782 NFDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKL 860 (884)
Q Consensus 782 d~~eL~eIi~~~L~~~~ekl~~~~i~LeIddevie~La~~~~~~~-GaR~Le~~iE~vl~~~L~e~~~~~~~~~~~~v~L 860 (884)
+.+++..|+...+.+...++...++.+.++++++++|+..+|.+. |+|.++++|++.+.+.+++....+....+..|++
T Consensus 654 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~~~~~~~~~~~~ 733 (758)
T 1r6b_X 654 STDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTV 733 (758)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHHSTTTTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 99999999999999999999978938996899999999808896789658999999998999999997186789998999
Q ss_pred EEECC
Q ss_conf 96348
Q 002758 861 VACEG 865 (884)
Q Consensus 861 v~~~~ 865 (884)
...++
T Consensus 734 ~~~~~ 738 (758)
T 1r6b_X 734 ALDKE 738 (758)
T ss_dssp EEEGG
T ss_pred EEECC
T ss_conf 99689
No 2
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=1.00 E-value=1 Score=273.18 Aligned_cols=292 Identities=18% Similarity=0.252 Sum_probs=237.8
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 05769999999616375626899999999999854888889999998618999737998068999999999739996239
Q 002758 465 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 544 (884)
Q Consensus 465 d~e~lk~L~~~L~~~ViGQ~~Ai~~I~~aI~~~rsg~~~~~~p~~k~~~~lLl~Gp~GvGKt~lAraLAe~l~gs~~~fi 544 (884)
+.+.+..+...|.+.|+||+.++..+..++.+.++|+.++.+|.+ +++|+||+|+|||++|++||+.+++...+|+
T Consensus 545 ~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~----~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i 620 (854)
T 1qvr_A 545 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIG----SFLFLGPTGVGKTELAKTLAATLFDTEEAMI 620 (854)
T ss_dssp HHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSE----EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEE
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCE----EEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 999998799887411678388999999999999626677888850----7998799998799999999998448888579
Q ss_pred EECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEECC
Q ss_conf 940688888889999743--455566655543201177999999708970899833024699999999987727813079
Q 002758 545 CADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS 622 (884)
Q Consensus 545 ~Idls~~~~~~~~~~sl~--p~g~~G~~e~~rgkt~~~~l~~al~~~P~~VIllDEIEka~~~vq~~Ll~ale~G~l~d~ 622 (884)
.++|+.+.. .+..+.++ +++|+|+.++ +.++++++..|++||||||||++++.+|+.|+++|++|+++++
T Consensus 621 ~i~~~~~~~-~~~~s~l~g~~~~~~G~~~~-------g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~ 692 (854)
T 1qvr_A 621 RIDMTEYME-KHAVSRLIGAPPGYVGYEEG-------GQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDS 692 (854)
T ss_dssp EECTTTCCS-SGGGGGC---------------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCS
T ss_pred EEECHHCCC-HHHHHHHCCCCCCCCCCCCC-------CHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECC
T ss_conf 972121032-34788872899988673656-------5599999838990899925100699999999998615804779
Q ss_pred CCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99286348619999038884222465554667741579998631122542010000234433233343333321344443
Q 002758 623 YGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLN 702 (884)
Q Consensus 623 ~Gr~V~l~naIiIlTsn~g~~~~~~~~~~~~~~f~Eeki~~~k~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~ 702 (884)
.|+.+++++++||+|||.+..... + + .+..
T Consensus 693 ~g~~vd~~~~iiI~tsn~~~~~~~-----------~------------~-~~~~-------------------------- 722 (854)
T 1qvr_A 693 HGRTVDFRNTVIILTSNLGSPLIL-----------E------------G-LQKG-------------------------- 722 (854)
T ss_dssp SSCCEECTTEEEEEECCTTHHHHH-----------H------------H-HHTT--------------------------
T ss_pred CCCEECCCCEEEEEECCCCHHHHH-----------H------------H-CCCC--------------------------
T ss_conf 987742577699995686768786-----------5------------2-1356--------------------------
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCC
Q ss_conf 43203789999887616888752179886567899710122210378888788730000367267740533034248999
Q 002758 703 KRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFN 782 (884)
Q Consensus 703 kRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~iVvFkPLd 782 (884)
.....+...+ .......|.++|++|+|.+++|.|++
T Consensus 723 -------------~~~~~l~~~v-------------------------------~~~~~~~f~~~l~~Rl~~~i~~~pl~ 758 (854)
T 1qvr_A 723 -------------WPYERIRDEV-------------------------------FKVLQQHFRPEFLNRLDEIVVFRPLT 758 (854)
T ss_dssp -------------CCHHHHHHHH-------------------------------HHHHHTTSCHHHHHTCSBCCBCCCCC
T ss_pred -------------CCHHHHHHHH-------------------------------HHHHHHHCCHHHHHHCCEEEECCCCC
T ss_conf -------------4069999999-------------------------------99998608999997458377489979
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 99999999999999996641898368817999999998603988-81899999999999999999972487899489999
Q 002758 783 FDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKLV 861 (884)
Q Consensus 783 ~~eL~eIi~~~L~~~~ekl~~~~i~LeIddevie~La~~~~~~~-GaR~Le~~iE~vl~~~L~e~~~~~~~~~~~~v~Lv 861 (884)
.+++..|+...+.+...++...++.+.++++++++|+..+|.+. |+|.|++.|++.+...+.+....+.......|.+.
T Consensus 759 ~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 838 (854)
T 1qvr_A 759 KEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVD 838 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHTSSCSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 99999999999999999998579659888999999998098978881789999999999999999982867899989999
Q ss_pred E
Q ss_conf 6
Q 002758 862 A 862 (884)
Q Consensus 862 ~ 862 (884)
.
T Consensus 839 ~ 839 (854)
T 1qvr_A 839 V 839 (854)
T ss_dssp C
T ss_pred E
T ss_conf 8
No 3
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=261.86 Aligned_cols=269 Identities=22% Similarity=0.317 Sum_probs=227.7
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 05769999999616375626899999999999854888889999998618999737998068999999999739996239
Q 002758 465 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 544 (884)
Q Consensus 465 d~e~lk~L~~~L~~~ViGQ~~Ai~~I~~aI~~~rsg~~~~~~p~~k~~~~lLl~Gp~GvGKt~lAraLAe~l~gs~~~fi 544 (884)
+.+.+..+...|.+.|+||++++..|..++...+.+...+.+|.+ ++||+||+|+|||.+|++||+.++++..+|+
T Consensus 478 ~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~----~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i 553 (758)
T 3pxi_A 478 ETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIG----SFIFLGPTGVGKTELARALAESIFGDEESMI 553 (758)
T ss_dssp HHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSE----EEEEESCTTSSHHHHHHHHHHHHHSCTTCEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCE----EEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 999999999998386817399999999999999704678899834----9999889998799999999998559976669
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEECCCC
Q ss_conf 94068888888999974345556665554320117799999970897089983302469999999998772781307999
Q 002758 545 CADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYG 624 (884)
Q Consensus 545 ~Idls~~~~~~~~~~sl~p~g~~G~~e~~rgkt~~~~l~~al~~~P~~VIllDEIEka~~~vq~~Ll~ale~G~l~d~~G 624 (884)
+++|+.+... . ... + +.++++++..|++||||||||++++.+|+.|+++|++|++++..|
T Consensus 554 ~i~~s~~~~~----~-------~~~--~-------~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g 613 (758)
T 3pxi_A 554 RIDMSEYMEK----H-------STS--G-------GQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKG 613 (758)
T ss_dssp EEEGGGGCSS----C-------CCC------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC----
T ss_pred EEECHHCCCC----C-------CCC--C-------CHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCC
T ss_conf 9712002664----3-------445--6-------414599994998399995710059999999999854676875899
Q ss_pred EEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 28634861999903888422246555466774157999863112254201000023443323334333332134444343
Q 002758 625 REVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKR 704 (884)
Q Consensus 625 r~V~l~naIiIlTsn~g~~~~~~~~~~~~~~f~Eeki~~~k~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~kR 704 (884)
+.+++.+++||+|||.+..... .
T Consensus 614 ~~~~~~~~~iI~ttn~~~~~~~--------------------------------------------------~------- 636 (758)
T 3pxi_A 614 RTVDFRNTILIMTSNVGASEKD--------------------------------------------------K------- 636 (758)
T ss_dssp -CCBCTTCEEEEEESSSTTCCH--------------------------------------------------H-------
T ss_pred CEECCCCEEEEEECCCCHHHHH--------------------------------------------------H-------
T ss_conf 7843677699993788713379--------------------------------------------------9-------
Q ss_pred HCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCHH
Q ss_conf 20378999988761688875217988656789971012221037888878873000036726774053303424899999
Q 002758 705 KLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFNFD 784 (884)
Q Consensus 705 k~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~iVvFkPLd~~ 784 (884)
.. ......|+++|++|+|.+|.|.|++.+
T Consensus 637 ----------------~~-----------------------------------~~~~~~f~p~l~~Rl~~~i~~~~l~~~ 665 (758)
T 3pxi_A 637 ----------------VM-----------------------------------GELKRAFRPEFINRIDEIIVFHSLEKK 665 (758)
T ss_dssp ----------------HH-----------------------------------HHHHHHSCHHHHTTSSEEEECC--CHH
T ss_pred ----------------HH-----------------------------------HHHHHHCCHHHHHHCCEEEECCCCCHH
T ss_conf ----------------99-----------------------------------999962899999447859965997999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 999999999999996641898368817999999998603988-8189999999999999999997248789948999963
Q 002758 785 ALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKLVAC 863 (884)
Q Consensus 785 eL~eIi~~~L~~~~ekl~~~~i~LeIddevie~La~~~~~~~-GaR~Le~~iE~vl~~~L~e~~~~~~~~~~~~v~Lv~~ 863 (884)
++.+|+...+.+...++...+..+.++++++++|+..+|... |+|.|+++|++.+...+++....+....+..|++..-
T Consensus 666 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~~~~~~~~~~~~~~ 745 (758)
T 3pxi_A 666 HLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVE 745 (758)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTTCSCSSSEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 99999999999999999967995997999999999828997789707999999999999999998087899998999988
Q ss_pred CC
Q ss_conf 48
Q 002758 864 EG 865 (884)
Q Consensus 864 ~~ 865 (884)
.+
T Consensus 746 ~~ 747 (758)
T 3pxi_A 746 DG 747 (758)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
No 4
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=1.00 E-value=1 Score=229.71 Aligned_cols=295 Identities=18% Similarity=0.233 Sum_probs=232.4
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 05769999999616375626899999999999854888889999998618999737998068999999999739996239
Q 002758 465 DLSNWKTLFRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFI 544 (884)
Q Consensus 465 d~e~lk~L~~~L~~~ViGQ~~Ai~~I~~aI~~~rsg~~~~~~p~~k~~~~lLl~Gp~GvGKt~lAraLAe~l~gs~~~fi 544 (884)
+.+.+..+.+.|.+.++||+.++..|..++...+.++.++.+|.. +++|+||+|+|||++|++||+.+.....+++
T Consensus 4 ~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~----~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 4 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIG----SFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp HHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSE----EEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCE----EEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 778999999999625289899999999999998657788899862----8999899995799999999999738876348
Q ss_pred EECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEECC
Q ss_conf 940688888889999743--455566655543201177999999708970899833024699999999987727813079
Q 002758 545 CADLCPQDGEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDS 622 (884)
Q Consensus 545 ~Idls~~~~~~~~~~sl~--p~g~~G~~e~~rgkt~~~~l~~al~~~P~~VIllDEIEka~~~vq~~Ll~ale~G~l~d~ 622 (884)
.++++..... .....++ ++++.|+... +.+.+++...+++||||||||++++.+|+.|+++++++.+.+.
T Consensus 80 ~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~-------~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~ 151 (311)
T 4fcw_A 80 RIDMTEYMEK-HAVSRLIGAPPGYVGYEEG-------GQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDS 151 (311)
T ss_dssp EEEGGGCCST-THHHHHHCCCTTSTTTTTC-------CHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECT
T ss_pred EEECCCCCCC-CCHHHHCCCCCCCCCCCCC-------CHHHHHHHHCCCEEEEEECHHHCCHHHHHHHHHHHHCCEEECC
T ss_conf 9606554663-2288726999865560455-------0689999859981999957343398999999999845979769
Q ss_pred CCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99286348619999038884222465554667741579998631122542010000234433233343333321344443
Q 002758 623 YGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLN 702 (884)
Q Consensus 623 ~Gr~V~l~naIiIlTsn~g~~~~~~~~~~~~~~f~Eeki~~~k~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~ 702 (884)
.|+.+++++++||+|+|.+.+.+.-.. . .
T Consensus 152 ~~~~~~~~~~iiI~ttn~~~~~i~~~~-----------------------~----------------------------~ 180 (311)
T 4fcw_A 152 HGRTVDFRNTVIIMTSNLGSPLILEGL-----------------------Q----------------------------K 180 (311)
T ss_dssp TSCEEECTTEEEEEEESTTHHHHHTTT-----------------------T----------------------------S
T ss_pred CCCEEECCCCEEEEECCCCHHHHHHHH-----------------------C----------------------------C
T ss_conf 997787777589992466879997543-----------------------1----------------------------4
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCC
Q ss_conf 43203789999887616888752179886567899710122210378888788730000367267740533034248999
Q 002758 703 KRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKAFN 782 (884)
Q Consensus 703 kRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~iVvFkPLd 782 (884)
. .+ ........ .......|.++|++|++.++.|.|++
T Consensus 181 ~------~~------~~~l~~~~-------------------------------~~~~~~~~~~~l~~R~~~~~~~~p~~ 217 (311)
T 4fcw_A 181 G------WP------YERIRDEV-------------------------------FKVLQQHFRPEFLNRLDEIVVFRPLT 217 (311)
T ss_dssp C------CC------SSTHHHHT-------------------------------HHHHHHHSCHHHHTTCSEEEECCCCC
T ss_pred C------CC------HHHHHHHH-------------------------------HHHHHHHCCHHHHHCCCEEEEECCCC
T ss_conf 6------64------89999999-------------------------------99998758998982478599807899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 99999999999999996641898368817999999998603988-81899999999999999999972487899489999
Q 002758 783 FDALAEKILKDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIEDWLEKVLVRGFLDAQEKYNLTANSIVKLV 861 (884)
Q Consensus 783 ~~eL~eIi~~~L~~~~ekl~~~~i~LeIddevie~La~~~~~~~-GaR~Le~~iE~vl~~~L~e~~~~~~~~~~~~v~Lv 861 (884)
.+++..++...+.+...++...+..+.++++++++|+...|... ++|.|+++++..+...+.+............|++.
T Consensus 218 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~i~i~ 297 (311)
T 4fcw_A 218 KEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVD 297 (311)
T ss_dssp HHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHTSSCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 99999999999999999999689679719999999998377856785307999999999999999982789999889999
Q ss_pred EECC
Q ss_conf 6348
Q 002758 862 ACEG 865 (884)
Q Consensus 862 ~~~~ 865 (884)
.-++
T Consensus 298 ~~~~ 301 (311)
T 4fcw_A 298 VGPA 301 (311)
T ss_dssp ECSS
T ss_pred EECC
T ss_conf 9789
No 5
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=1.00 E-value=1 Score=203.07 Aligned_cols=290 Identities=18% Similarity=0.211 Sum_probs=185.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 699999996163756268999999999998----5488888999999861899973799806899999999973999623
Q 002758 468 NWKTLFRALTEKIDWQDEAISVISQTIAQR----RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENF 543 (884)
Q Consensus 468 ~lk~L~~~L~~~ViGQ~~Ai~~I~~aI~~~----rsg~~~~~~p~~k~~~~lLl~Gp~GvGKt~lAraLAe~l~gs~~~f 543 (884)
.+..|.+.|.+.|+||++++..|..++... +.+...... +..+..+||+||+|+|||.+|++||+.+ ..+|
T Consensus 5 ~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~ 79 (363)
T 3hws_A 5 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGV--ELGKSNILLIGPTGSGKTLLAETLARLL---DVPF 79 (363)
T ss_dssp CHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSC--CCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCE
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCE
T ss_conf 8999999987460388999999999999998652001112345--6799818998999988999999999982---9988
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-------HCCCEEEEECCCCCCCHH-----------
Q ss_conf 99406888888899997434555666555432011779999997-------089708998330246999-----------
Q 002758 544 ICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWELL-------KKPLSVVYLENVDKADVH----------- 605 (884)
Q Consensus 544 i~Idls~~~~~~~~~~sl~p~g~~G~~e~~rgkt~~~~l~~al~-------~~P~~VIllDEIEka~~~----------- 605 (884)
+.++++... +.+|+|+... +.+...+. ..+.+||||||||++++.
T Consensus 80 ~~~~~~~l~----------~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~ 142 (363)
T 3hws_A 80 TMADATTLT----------EAGYVGEDVE-------NIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVS 142 (363)
T ss_dssp EEEEHHHHT----------TCHHHHHHHT-------HHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHH
T ss_pred EEECHHHHC----------CCCCCCCCHH-------HHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCCCCCCC
T ss_conf 981467731----------3322464277-------89999999743568736996899968666350335653343213
Q ss_pred ---HHHHHHHHHHCCEE---ECCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHCCCCCC
Q ss_conf ---99999987727813---07999286348619999038884222465554667741-579998631122542010000
Q 002758 606 ---VQNSLSKAIQTGKL---PDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFS-EEKIYRAKSRLTQILIEPALV 678 (884)
Q Consensus 606 ---vq~~Ll~ale~G~l---~d~~Gr~V~l~naIiIlTsn~g~~~~~~~~~~~~~~f~-Eeki~~~k~~~l~i~i~~~~~ 678 (884)
+|+.|+++|+ |.+ ++..|+.++..+.++|+|+|...-. ...|. -+++.+.+-.. ...+++...
T Consensus 143 ~~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~--------~g~~~~l~~~i~~~~~~-~~~~gf~~~ 212 (363)
T 3hws_A 143 GEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFIC--------GGAFAGLDKVISHRVET-GSGIGFGAT 212 (363)
T ss_dssp HHHHHHHHHHHHH-CC----------------CCCCCTTSSEEEE--------EECCTTHHHHHHHHHCC-CC-------
T ss_pred HHHHHHHHHHHHC-CCEEECCCCCCCCCCCCCEEEEECCCCEEEE--------CCCCHHHHHHHHHHHHC-CCCCCCCCC
T ss_conf 2899999999853-7625226766654677764999878700784--------37707799999986312-456786655
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 23443323334333332134444343203789999887616888752179886567899710122210378888788730
Q 002758 679 NRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSS 758 (884)
Q Consensus 679 ~~~~~~~v~~~~~~~~~~~p~~~~kRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~~~~~~~~~~~~ 758 (884)
. ..+ . +........... ...
T Consensus 213 ~-----------------------~~~----~---~~~~~~~l~~~v------------------------------~~~ 232 (363)
T 3hws_A 213 V-----------------------KAK----S---DKASEGELLAQV------------------------------EPE 232 (363)
T ss_dssp -----------------------------------CCSCHHHHHHTC------------------------------CHH
T ss_pred C-----------------------CCC----C---CCHHHHHHHHHC------------------------------CHH
T ss_conf 4-----------------------544----3---201068898857------------------------------999
Q ss_pred C-CCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHH----HHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCC-CHHHHH
Q ss_conf 0-003672677405330342489999999999999----9999996641898368817999999998603988-818999
Q 002758 759 E-NTKSWLQDFFNQRVKIVAFKAFNFDALAEKILK----DINASFRKTVGSECLLEIDRKVMEQLLAAAYLSE-SNRVIE 832 (884)
Q Consensus 759 ~-~~~~f~~efl~rID~iVvFkPLd~~eL~eIi~~----~L~~~~ekl~~~~i~LeIddevie~La~~~~~~~-GaR~Le 832 (884)
+ ....|.++|++|+|.+++|.|++.+++.+|+.. .+.+....+...+..+.++++++++|+..+|... |+|.|+
T Consensus 233 ~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~ 312 (363)
T 3hws_A 233 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLR 312 (363)
T ss_dssp HHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHH
T ss_pred HHHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 99871988788656671540489999999999998998999999999984696488789999999996168766824799
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999972
Q 002758 833 DWLEKVLVRGFLDAQEK 849 (884)
Q Consensus 833 ~~iE~vl~~~L~e~~~~ 849 (884)
++|++.+.+.+.++...
T Consensus 313 ~~ie~~~~~~l~~~~~~ 329 (363)
T 3hws_A 313 SIVEAALLDTMYDLPSM 329 (363)
T ss_dssp HHHHHHHHHHHHSTTTC
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99999989999745244
No 6
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=1.00 E-value=1 Score=181.49 Aligned_cols=292 Identities=16% Similarity=0.168 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HHHCCC-------CCCCCC------CCCCCEEEEEECCCCCCHHHH
Q ss_conf 576999999961637562689999999999----985488-------888999------999861899973799806899
Q 002758 466 LSNWKTLFRALTEKIDWQDEAISVISQTIA----QRRTGH-------EDHHGA------SPRRDIWFNFTGPDLCGKRKI 528 (884)
Q Consensus 466 ~e~lk~L~~~L~~~ViGQ~~Ai~~I~~aI~----~~rsg~-------~~~~~p------~~k~~~~lLl~Gp~GvGKt~l 528 (884)
...++.+.+.|.+.|+||++++..|..++. +.+.|. .++.+| ..+...+++|+||+|+|||++
T Consensus 9 ~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 9 IPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHH
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHH
T ss_conf 99989999998658159099999999999999998875432210011233445565554556899889989899888999
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-------HHCCCEEEEECCCCC
Q ss_conf 9999999739996239940688888889999743455566655543201177999999-------708970899833024
Q 002758 529 AIALAEIIYGGKENFICADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAWEL-------LKKPLSVVYLENVDK 601 (884)
Q Consensus 529 AraLAe~l~gs~~~fi~Idls~~~~~~~~~~sl~p~g~~G~~e~~rgkt~~~~l~~al-------~~~P~~VIllDEIEk 601 (884)
|++||+.+ ..+|+.+++..... .+|+|.... +.+...+ ...+.+||||||||+
T Consensus 89 a~~la~~l---~~~~~~~~~~~~~~----------~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 148 (376)
T 1um8_A 89 AQTLAKHL---DIPIAISDATSLTE----------AGYVGEDVE-------NILTRLLQASDWNVQKAQKGIVFIDEIDK 148 (376)
T ss_dssp HHHHHHHT---TCCEEEEEGGGCC------------------CT-------HHHHHHHHHTTTCHHHHTTSEEEEETGGG
T ss_pred HHHHHHHH---CCCEEEECCHHHHH----------CCCCCCCHH-------HHHHHHHHHCCCHHHHCCCEEEEECCHHH
T ss_conf 99999981---99889953135431----------476785699-------99999876401116645980999857777
Q ss_pred CCHH--------------HHHHHHHHHHCCEE--ECCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 6999--------------99999987727813--0799928634861999903888422246555466774157999863
Q 002758 602 ADVH--------------VQNSLSKAIQTGKL--PDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAK 665 (884)
Q Consensus 602 a~~~--------------vq~~Ll~ale~G~l--~d~~Gr~V~l~naIiIlTsn~g~~~~~~~~~~~~~~f~Eeki~~~k 665 (884)
+... +|+.|+++|+.+.+ +..+|+.....+.++|.|+|...-. ...+.. +..
T Consensus 149 l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~--------~~~~~~--l~~-- 216 (376)
T 1um8_A 149 ISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFIC--------AGAFDG--LAE-- 216 (376)
T ss_dssp C--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEE--------EECCTT--HHH--
T ss_pred HHHHCCCCCEECCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEECCCEEEEE--------CCCHHH--HHH--
T ss_conf 74304787200145437899999998615502015655544577641799558757994--------698777--789--
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11225420100002344332333433333213444434320378999988761688875217988656789971012221
Q 002758 666 SRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVL 745 (884)
Q Consensus 666 ~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~kRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~ 745 (884)
.+ .|+..+ .++..+..+.+.+
T Consensus 217 ------~l-----------------------------~~R~~~------------------------~~~g~~~~~~~~~ 237 (376)
T 1um8_A 217 ------II-----------------------------KKRTTQ------------------------NVLGFTQEKMSKK 237 (376)
T ss_dssp ------HT-----------------------------TTSCSS------------------------CCCSCCCSSCCTT
T ss_pred ------HH-----------------------------HHHHCC------------------------CCCCCCCHHHHCC
T ss_conf ------99-----------------------------988423------------------------5557784443200
Q ss_pred HCCCCCCCCCCCCC-CCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHH----HHHHHHHHHCCCCCEEEECHHHHHHHHH
Q ss_conf 03788887887300-003672677405330342489999999999999----9999996641898368817999999998
Q 002758 746 VLDSDDDRNSDSSE-NTKSWLQDFFNQRVKIVAFKAFNFDALAEKILK----DINASFRKTVGSECLLEIDRKVMEQLLA 820 (884)
Q Consensus 746 ~~~~~~~~~~~~~~-~~~~f~~efl~rID~iVvFkPLd~~eL~eIi~~----~L~~~~ekl~~~~i~LeIddevie~La~ 820 (884)
..+ .-..+..... ....|.++|++|++.++.|.||+.+++.+++.. .+.+....+...+..+.++++++++|+.
T Consensus 238 ~~~-~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 316 (376)
T 1um8_A 238 EQE-AILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQ 316 (376)
T ss_dssp TTT-TSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred CHH-HHHHHCCHHHHHHCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
T ss_conf 066-8886418888855589768754787144446799999999985257779999999986659669988999999999
Q ss_pred HCCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 603988-81899999999999999999972
Q 002758 821 AAYLSE-SNRVIEDWLEKVLVRGFLDAQEK 849 (884)
Q Consensus 821 ~~~~~~-GaR~Le~~iE~vl~~~L~e~~~~ 849 (884)
.+|... ++|.|+++++..+...+.++...
T Consensus 317 ~~~~~~~~~R~L~~~le~~~~~~~~~~~~~ 346 (376)
T 1um8_A 317 LALERKTGARGLRAIIEDFCLDIMFDLPKL 346 (376)
T ss_dssp HHHHTTCTGGGHHHHHHHHHHHHHHTGGGG
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 743566682779999999999998625578
No 7
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=1.00 E-value=1 Score=160.71 Aligned_cols=87 Identities=8% Similarity=0.194 Sum_probs=74.0
Q ss_pred CCHHHHHCCCCEEEECCCCCHHHHHHHH---HHHHHHHHHHHCC-CCCEEEECHHHHHHHHHHCCC-----CC-CHHHHH
Q ss_conf 6726774053303424899999999999---9999999966418-983688179999999986039-----88-818999
Q 002758 763 SWLQDFFNQRVKIVAFKAFNFDALAEKI---LKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYL-----SE-SNRVIE 832 (884)
Q Consensus 763 ~f~~efl~rID~iVvFkPLd~~eL~eIi---~~~L~~~~ekl~~-~~i~LeIddevie~La~~~~~-----~~-GaR~Le 832 (884)
.+.|+|++|++.+|.|.+|+.+++.+|+ .+.+.+.+.+..+ .++.+.++++|+++|+..++. .+ |+|.|+
T Consensus 318 dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~ 397 (444)
T 1g41_A 318 DLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLH 397 (444)
T ss_dssp GSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHH
T ss_pred HCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 40657754463254179999999999999788769999999851459458989999999999988741478647825899
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999972
Q 002758 833 DWLEKVLVRGFLDAQEK 849 (884)
Q Consensus 833 ~~iE~vl~~~L~e~~~~ 849 (884)
+.+|+++.....++...
T Consensus 398 ~~ie~~~~~~~~~~~~~ 414 (444)
T 1g41_A 398 TVMERLMDKISFSASDM 414 (444)
T ss_dssp HHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99999999998534225
No 8
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=1.00 E-value=1 Score=155.18 Aligned_cols=244 Identities=14% Similarity=0.198 Sum_probs=168.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--HCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 699999996163756268999999999998--548888899999986189997379980689999999997399962399
Q 002758 468 NWKTLFRALTEKIDWQDEAISVISQTIAQR--RTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFIC 545 (884)
Q Consensus 468 ~lk~L~~~L~~~ViGQ~~Ai~~I~~aI~~~--rsg~~~~~~p~~k~~~~lLl~Gp~GvGKt~lAraLAe~l~gs~~~fi~ 545 (884)
+++.+...|.+.|+||++++..|..++... +.++....++ ++.+..++|+||+|+|||.+|+++|+.+ ...++.
T Consensus 5 ~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~ 80 (310)
T 1ofh_A 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIK 80 (310)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHH-HCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEE
T ss_conf 999999987644478299999999999988766530210002-5788649988979899999999999981---898799
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH----HHHH-CCCEEEEECCCCCCCHHH------------HH
Q ss_conf 406888888899997434555666555432011779999----9970-897089983302469999------------99
Q 002758 546 ADLCPQDGEMNNPPKFYHQVVGGDSVQFRGKTLADYVAW----ELLK-KPLSVVYLENVDKADVHV------------QN 608 (884)
Q Consensus 546 Idls~~~~~~~~~~sl~p~g~~G~~e~~rgkt~~~~l~~----al~~-~P~~VIllDEIEka~~~v------------q~ 608 (884)
++++.... .+|+|....- .+..+.. .+.. .+..||||||||+++... |+
T Consensus 81 i~~~~~~~----------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~ 146 (310)
T 1ofh_A 81 VEATKFTE----------VGYVGKEVDS----IIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQR 146 (310)
T ss_dssp EEGGGGSS----------CCSGGGSTTH----HHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHH
T ss_pred ECCHHCCC----------CCCCCCCHHH----HHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 70012235----------7756755778----999999875577762258988999775541710012555503789999
Q ss_pred HHHHHHHCCEEECCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99987727813079992863486199990388842224655546677415799986311225420100002344332333
Q 002758 609 SLSKAIQTGKLPDSYGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSA 688 (884)
Q Consensus 609 ~Ll~ale~G~l~d~~Gr~V~l~naIiIlTsn~g~~~~~~~~~~~~~~f~Eeki~~~k~~~l~i~i~~~~~~~~~~~~v~~ 688 (884)
.|+++++.+.+....| .+...+.+||++++....
T Consensus 147 ~Ll~~le~~~~~~~~~-~~~~~~~~~i~~~~~~~~--------------------------------------------- 180 (310)
T 1ofh_A 147 DLLPLVEGSTVSTKHG-MVKTDHILFIASGAFQVA--------------------------------------------- 180 (310)
T ss_dssp HHHHHHHCCEEEETTE-EEECTTCEEEEEECCSSS---------------------------------------------
T ss_pred HHHHHHCCCEEECCCC-CCCCCCEEEEECCCCCCC---------------------------------------------
T ss_conf 9999854773731454-235785799972776667---------------------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 43333321344443432037899998876168887521798865678997101222103788887887300003672677
Q 002758 689 SETSEGMSHQKLLNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDF 768 (884)
Q Consensus 689 ~~~~~~~~~p~~~~kRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~~~~~~~~~~~~~~~~~f~~ef 768 (884)
. ...+.++|
T Consensus 181 --------~---------------------------------------------------------------~~~l~~~l 189 (310)
T 1ofh_A 181 --------R---------------------------------------------------------------PSDLIPEL 189 (310)
T ss_dssp --------C---------------------------------------------------------------GGGSCHHH
T ss_pred --------C---------------------------------------------------------------CCCCCHHH
T ss_conf --------8---------------------------------------------------------------02189989
Q ss_pred HCCCCEEEECCCCCHHHHHHHHHH---HHHHHHHHH-CCCCCEEEECHHHHHHHHHHCCC------CCCHHHHHHHHHHH
Q ss_conf 405330342489999999999999---999999664-18983688179999999986039------88818999999999
Q 002758 769 FNQRVKIVAFKAFNFDALAEKILK---DINASFRKT-VGSECLLEIDRKVMEQLLAAAYL------SESNRVIEDWLEKV 838 (884)
Q Consensus 769 l~rID~iVvFkPLd~~eL~eIi~~---~L~~~~ekl-~~~~i~LeIddevie~La~~~~~------~~GaR~Le~~iE~v 838 (884)
++|++.+|.|.|++.+++.+++.. .+...+.+. ...+..+.++++++++|+..+|. ..+.|.+.+.++..
T Consensus 190 ~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~ 269 (310)
T 1ofh_A 190 QGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERL 269 (310)
T ss_dssp HHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHH
T ss_pred HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 80178158768969899999998668888999999987569710439999999999865403442112707799999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 002758 839 LVRGFLDA 846 (884)
Q Consensus 839 l~~~L~e~ 846 (884)
+.....+.
T Consensus 270 ~~~~~~~~ 277 (310)
T 1ofh_A 270 MDKISFSA 277 (310)
T ss_dssp SHHHHHHG
T ss_pred HHHHHCCC
T ss_conf 88651477
No 9
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=1.00 E-value=1 Score=146.95 Aligned_cols=233 Identities=13% Similarity=0.154 Sum_probs=161.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf 99961637562689999999999985488888999999861899973799806899999999973999623994068888
Q 002758 473 FRALTEKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQD 552 (884)
Q Consensus 473 ~~~L~~~ViGQ~~Ai~~I~~aI~~~rsg~~~~~~p~~k~~~~lLl~Gp~GvGKt~lAraLAe~l~gs~~~fi~Idls~~~ 552 (884)
.+.|.+.++|++.+...+...+.........+ ...++|+||+|+|||++|++||..+ ...++.++++...
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~-------g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLTKSLK-------GPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISLGGVR 145 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCC-------SCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEECCCC--
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC-------CCEEEEECCCCCCHHHHHHHHHHHC---CCCEEEEEECCCC
T ss_conf 99888775047999999999999987412678-------9889999999988999999999862---8986999824663
Q ss_pred CCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHH--CCCEEEEECCCCCCCHH----HHHHHHHHHHCCE---EEC
Q ss_conf 8889999743--45556665554320117799999970--89708998330246999----9999998772781---307
Q 002758 553 GEMNNPPKFY--HQVVGGDSVQFRGKTLADYVAWELLK--KPLSVVYLENVDKADVH----VQNSLSKAIQTGK---LPD 621 (884)
Q Consensus 553 ~~~~~~~sl~--p~g~~G~~e~~rgkt~~~~l~~al~~--~P~~VIllDEIEka~~~----vq~~Ll~ale~G~---l~d 621 (884)
. ...+. ...|.|+..+ .+...+.. ....|+||||||++... .++.|+++|+.+. +.+
T Consensus 146 ~----~~~~~g~~~~~ig~~~~--------~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~ 213 (543)
T 3m6a_A 146 D----ESEIRGHRRTYVGAMPG--------RIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSD 213 (543)
T ss_dssp ------------------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCC
T ss_pred H----HHHHHHHHHHHHCCCCH--------HHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEC
T ss_conf 1----65534577777503721--------89999998523398999932645444335689999999874552351010
Q ss_pred C-CCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9-992863486199990388842224655546677415799986311225420100002344332333433333213444
Q 002758 622 S-YGREVSVSNAIFVTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKL 700 (884)
Q Consensus 622 ~-~Gr~V~l~naIiIlTsn~g~~~~~~~~~~~~~~f~Eeki~~~k~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~ 700 (884)
. .+..+++.+++||+|+|...
T Consensus 214 ~~~~~~~~~~~v~iI~ttN~~~---------------------------------------------------------- 235 (543)
T 3m6a_A 214 HYIEETFDLSKVLFIATANNLA---------------------------------------------------------- 235 (543)
T ss_dssp SSSCCCCBCSSCEEEEECSSTT----------------------------------------------------------
T ss_pred CCCCEEECCCCEEEEECCCCCC----------------------------------------------------------
T ss_conf 4677054156458981469600----------------------------------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCC
Q ss_conf 43432037899998876168887521798865678997101222103788887887300003672677405330342489
Q 002758 701 LNKRKLIGRNDNPQQHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKIVAFKA 780 (884)
Q Consensus 701 ~~kRk~~~~~~~~~~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~iVvFkP 780 (884)
.+.+.|++|++ +|.|.+
T Consensus 236 --------------------------------------------------------------~l~~aL~~R~~-vi~~~~ 252 (543)
T 3m6a_A 236 --------------------------------------------------------------TIPGPLRDRME-IINIAG 252 (543)
T ss_dssp --------------------------------------------------------------TSCHHHHHHEE-EEECCC
T ss_pred --------------------------------------------------------------CCCHHHHHHCC-EEEECC
T ss_conf --------------------------------------------------------------09999985243-025289
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCC-CCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999966418-983688179999999986039888189999999999999999997
Q 002758 781 FNFDALAEKILKDINASFRKTVG-SECLLEIDRKVMEQLLAAAYLSESNRVIEDWLEKVLVRGFLDAQE 848 (884)
Q Consensus 781 Ld~~eL~eIi~~~L~~~~ekl~~-~~i~LeIddevie~La~~~~~~~GaR~Le~~iE~vl~~~L~e~~~ 848 (884)
++.++..+|+...+...+.+..+ ....+.++++++++|+..+..+.|.|.|++.|+.++...-..+..
T Consensus 253 ~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~ 321 (543)
T 3m6a_A 253 YTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVA 321 (543)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998999999999989999998089745566789999999984885312147999999999999999974
No 10
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=1.00 E-value=1 Score=140.28 Aligned_cols=225 Identities=14% Similarity=0.148 Sum_probs=154.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf 63756268999999999998548888899999986189997379980689999999997399962399406888888899
Q 002758 478 EKIDWQDEAISVISQTIAQRRTGHEDHHGASPRRDIWFNFTGPDLCGKRKIAIALAEIIYGGKENFICADLCPQDGEMNN 557 (884)
Q Consensus 478 ~~ViGQ~~Ai~~I~~aI~~~rsg~~~~~~p~~k~~~~lLl~Gp~GvGKt~lAraLAe~l~gs~~~fi~Idls~~~~~~~~ 557 (884)
+.++|++.++..+...+..... .+..+||+||+|+|||.+|++++........+|+.++|+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~---- 66 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE---- 66 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH----
T ss_pred CCCEECCHHHHHHHHHHHHHHC-----------CCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCH----
T ss_conf 9747779999999999999847-----------8980999897980199999999984742189869986798986----
Q ss_pred CCCCCCCCCCCCCCC-CCCCC--HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEECCCCEEEECCCEEE
Q ss_conf 997434555666555-43201--177999999708970899833024699999999987727813079992863486199
Q 002758 558 PPKFYHQVVGGDSVQ-FRGKT--LADYVAWELLKKPLSVVYLENVDKADVHVQNSLSKAIQTGKLPDSYGREVSVSNAIF 634 (884)
Q Consensus 558 ~~sl~p~g~~G~~e~-~rgkt--~~~~l~~al~~~P~~VIllDEIEka~~~vq~~Ll~ale~G~l~d~~Gr~V~l~naIi 634 (884)
.++...++|+..+ |.|.. ..+.+..+ ..++||||||+.++...|..|+++++++.+...++....-.++.|
T Consensus 67 --~l~~~~lfg~~~g~~tg~~~~~~g~~~~a----~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ri 140 (304)
T 1ojl_A 67 --SLLESELFGHEKGAFTGADKRREGRFVEA----DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRL 140 (304)
T ss_dssp --HHHHHHHTCCCSSCCC---CCCCCHHHHH----TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEE
T ss_pred --HHHHHHHCCCCCCCCCCHHHHHCCHHHHC----CCCEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCEEE
T ss_conf --78899863865566575122106778866----898799956464999999999999852886205876324677599
Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 99038884222465554667741579998631122542010000234433233343333321344443432037899998
Q 002758 635 VTASSFVEDARILPSEMKDCKFSEEKIYRAKSRLTQILIEPALVNRSSSQKLSASETSEGMSHQKLLNKRKLIGRNDNPQ 714 (884)
Q Consensus 635 IlTsn~g~~~~~~~~~~~~~~f~Eeki~~~k~~~l~i~i~~~~~~~~~~~~v~~~~~~~~~~~p~~~~kRk~~~~~~~~~ 714 (884)
|++||.... +
T Consensus 141 I~atn~~l~--------------~-------------------------------------------------------- 150 (304)
T 1ojl_A 141 IAATHRDLA--------------E-------------------------------------------------------- 150 (304)
T ss_dssp EEEESSCHH--------------H--------------------------------------------------------
T ss_pred EEECCCCHH--------------H--------------------------------------------------------
T ss_conf 984481078--------------8--------------------------------------------------------
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCEE-EECCCCC--HHHHHHHHH
Q ss_conf 8761688875217988656789971012221037888878873000036726774053303-4248999--999999999
Q 002758 715 QHDTSEMVKRAHRSPTRNLDLNLPAEEDEVLVLDSDDDRNSDSSENTKSWLQDFFNQRVKI-VAFKAFN--FDALAEKIL 791 (884)
Q Consensus 715 ~~~~~~~~K~~~~~s~~~lDLNlp~~e~e~~~~~~~~~~~~~~~~~~~~f~~efl~rID~i-VvFkPLd--~~eL~eIi~ 791 (884)
.. ....|.++|+.|++.+ |.+.||. .+++..++.
T Consensus 151 ------~v-------------------------------------~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 151 ------EV-------------------------------------SAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp ------HH-------------------------------------HHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHH
T ss_pred ------HH-------------------------------------HHCCCHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
T ss_conf ------88-------------------------------------70875799985067568854687772766788899
Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCH-HHHHHHHHHHHH
Q ss_conf 9999999664189836881799999999860398881-899999999999
Q 002758 792 KDINASFRKTVGSECLLEIDRKVMEQLLAAAYLSESN-RVIEDWLEKVLV 840 (884)
Q Consensus 792 ~~L~~~~ekl~~~~i~LeIddevie~La~~~~~~~Ga-R~Le~~iE~vl~ 840 (884)
..+.+...+. + .....+++++++.|..+.|. |+ |.|++.++..+.
T Consensus 188 ~~l~~~~~~~-~-~~~~~~s~~a~~~L~~~~wp--GnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 188 HFLRRFAERN-R-KVVKGFTPQAMDLLIHYDWP--GNIRELENAIERAVV 233 (304)
T ss_dssp HHHHHHHHHT-T-CCCCCBCHHHHHHHHHCCCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-C-CCCCCCCHHHHHHHHCCCCC--CCHHHHHHHHHHHHH
T ss_conf 9999999985-3-67568879999999839999--889999999999998
Done!