Query 002759
Match_columns 884
No_of_seqs 565 out of 6239
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 18:07:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002759.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1473-1477//hhsearch_pdb/002759hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 562.1 35.0 451 21-480 3-513 (768)
2 4eco_A Uncharacterized protein 1.0 1 1 484.1 30.0 433 27-471 27-601 (636)
3 4ecn_A Leucine-rich repeat pro 1.0 1 1 476.3 33.8 431 26-475 265-845 (876)
4 3rgz_A Protein brassinosteroid 1.0 1 1 437.8 25.8 408 73-482 101-539 (768)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 423.2 34.9 431 62-495 15-564 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 405.2 34.0 416 63-480 14-523 (606)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 403.5 30.0 416 72-493 32-560 (606)
8 4eco_A Uncharacterized protein 1.0 1 1 400.2 21.4 427 26-477 23-585 (636)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 398.7 31.9 182 76-261 16-199 (606)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 397.1 34.7 423 73-503 49-591 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=562.10 Aligned_cols=451 Identities=33% Similarity=0.471 Sum_probs=303.7
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCC---CC--------
Q ss_conf 3116689642799999988305889988656866899997877604966999777999267534543---54--------
Q 002759 21 LGVSSASAATDKEILLQFKGNITDDPHNKLASWVSSGNPCENFKGVFCNPDGFVDRIVLWNFSLGGV---LS-------- 89 (884)
Q Consensus 21 ~~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~sW~~~~~~c~~w~gv~C~~~~~v~~l~l~~~~l~g~---~~-------- 89 (884)
+++.+++.+.|++||++||+++. ||. .++||. .+++||.|.||+|+ +++|+++++.+.++.|. ++
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~-~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLP-DKN-LLPDWS-SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCS-CTT-SSTTCC-TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC-CCC-CCCCCC-CCCCCCCCCCEEEC-CCCEEEEECCCCCCCCCCCCCCHHHHCCCC
T ss_conf 67656687899999999996678-962-146878-99987688413878-992789877899867755766965731680
Q ss_pred ---------------CCCCCCCCCCEEEECCCCCCCCCCH--HHHCCCCCEEEECCCCCCCCCCCCCC-CCCCCCCEEEC
Q ss_conf ---------------1223888888575017737456961--11201479076158897889988557-89998545728
Q 002759 90 ---------------PALSGLKSLRVLTLFGNRFTGNLPQ--EYAEMQTLWKINVSSNALSGSIPEFI-GDLPNIRLLDL 151 (884)
Q Consensus 90 ---------------~~l~~l~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L 151 (884)
+.++.+++|++|+|++|.++|.+|. .++++++|++|+|++|.+++.+|..+ .++++|++|+|
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 22467868886787033245788998989898578707896787278899989896882677479778563889998989
Q ss_pred CCCCCCCCCCHHH--HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 8986679886243--31046684998468855787563343568888267224878899898778899533898327846
Q 002759 152 SRNSYSGEIPFAL--FKYCYKTKFVSLSHNNLSGSIPLSIANCTYLEGFDFSFNNLSGELPSQICNIPVLDFISVRGNAL 229 (884)
Q Consensus 152 s~n~~~g~ip~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 229 (884)
++|++++..|... +..+++|++|++++|.+++..+ +.++++|++|++++|++++.+|. +.++++|++|++++|.+
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCC
T ss_conf 7983588587155664358988989897880346578--45478689898928827887711-12699999897948858
Q ss_pred CCCCCCCCCCCCEECEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCC
Q ss_conf 79752111357801489858884588688888899986589944273226554423468-88828705778678978843
Q 002759 230 TGTVEEQFSQCQSIKNLDLSSNLFIGLAPFGVLGLKNISYFNVSHNGFHGEIPEVGICG-EGMQVFDASWNEFDGVIPLS 308 (884)
Q Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~ 308 (884)
++..+..+..+++|++|++++|.+.+..|.. .+++|++|++++|++++.+|..+... .+|+.|++++|++.+..|..
T Consensus 236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 313 (768)
T 3rgz_A 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313 (768)
T ss_dssp CSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHH
T ss_conf 7816577744888898989888665716724--36878989791785577258888844686889989689677842367
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCC------------
Q ss_conf 445654554201477334568877-33546751899237866787898766766-5418946787578------------
Q 002759 309 ITNCRNLKVLDLGFNRLIGSIPTG-ITDLRRLLKISLANNSIGGIIPPNLGSIE-LLEVLDLHNLNLR------------ 374 (884)
Q Consensus 309 ~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~------------ 374 (884)
+.++++|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+..++ +|+.|++++|+++
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCC
T ss_conf 75587766778978852573797887248888788484784376230989863227719986278747876766653324
Q ss_pred --------------CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf --------------788867747788868852375478986111118855747871376467889956459999997985
Q 002759 375 --------------GEVPDDISNCRFLLLLDVSGNALGGDIPQTLYNMTYLKILDLHQNHLNGSTPPSLGNLSNLQVLDL 440 (884)
Q Consensus 375 --------------~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 440 (884)
+..|..+.++++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEE
T ss_conf 77618989778465424877756898798989588466854677744998898989788154718978828777329990
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 4883577569976766756389845883755578300026
Q 002759 441 SQNSLSGSIPSSLGNLRNLTHFNLSSNNLSGTIPSTIQHF 480 (884)
Q Consensus 441 ~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~ 480 (884)
++|++++.+|..+..+++|+.|++++|++++.+|.++..+
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 1995137588788169989989753995189687688568
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=484.15 Aligned_cols=433 Identities=19% Similarity=0.256 Sum_probs=380.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCC-------CCCCCCCCCCCCCCC---CCEEECCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 9642799999988305889988-------656866899997877---604966999777999267534543541223888
Q 002759 27 SAATDKEILLQFKGNITDDPHN-------KLASWVSSGNPCENF---KGVFCNPDGFVDRIVLWNFSLGGVLSPALSGLK 96 (884)
Q Consensus 27 ~~~~~~~~ll~~k~~~~~~~~~-------~~~sW~~~~~~c~~w---~gv~C~~~~~v~~l~l~~~~l~g~~~~~l~~l~ 96 (884)
....|++||.+|+.++..+.+. ..++|+. +.+||.| .||+|+..|+|++++|.+.++.|.++++++.|+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHCCC
T ss_conf 677889999999997589974547767765788777-9980001477984876789788998427665772885785684
Q ss_pred CCCEEEECCCC---------------------------------------------------------------------
Q ss_conf 88857501773---------------------------------------------------------------------
Q 002759 97 SLRVLTLFGNR--------------------------------------------------------------------- 107 (884)
Q Consensus 97 ~L~~L~L~~n~--------------------------------------------------------------------- 107 (884)
+|++|+|++|.
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 51189876885123774334532356733888888876577755411706667788777764275546541013344213
Q ss_pred ---------CCCCCCHHHHCCCCCEEEECCCCCCCCC-----------------CCCCCC--CCCCCCEEECCCCCCCCC
Q ss_conf ---------7456961112014790761588978899-----------------885578--999854572889866798
Q 002759 108 ---------FTGNLPQEYAEMQTLWKINVSSNALSGS-----------------IPEFIG--DLPNIRLLDLSRNSYSGE 159 (884)
Q Consensus 108 ---------~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n~~~g~ 159 (884)
++| +|..++++++|++|+|++|.+++. +|..++ ++++|++|+|++|++.|.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred HHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCC
T ss_conf 001013677750-7877725647878988688236642322122222100102486322004468788898048857762
Q ss_pred CCHHHHHCCCCCCEEECCCCC-CCC-CCCCCCCCC------CCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCC
Q ss_conf 862433104668499846885-578-756334356------8888267224878899898--778899533898327846
Q 002759 160 IPFALFKYCYKTKFVSLSHNN-LSG-SIPLSIANC------TYLEGFDFSFNNLSGELPS--QICNIPVLDFISVRGNAL 229 (884)
Q Consensus 160 ip~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~n~l 229 (884)
+|.. +..+++|+.|++++|+ +++ .+|..++++ ++|++|++++|+++ .+|. .+.++++|+.|++++|.+
T Consensus 265 ~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 265 LPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp CCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred CHHH-HHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 8388-83499978897847988766533578875430465788888989799377-667655542578889896908807
Q ss_pred CCCCCCCCCCCCEECEEECCCCCCCCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCC
Q ss_conf 7975211135780148985888458868888889998-65899442732265544234688--88287057786789788
Q 002759 230 TGTVEEQFSQCQSIKNLDLSSNLFIGLAPFGVLGLKN-ISYFNVSHNGFHGEIPEVGICGE--GMQVFDASWNEFDGVIP 306 (884)
Q Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~ 306 (884)
++.+| .|..+++|+.|++++|.++ ..|..+..+++ |++|++++|+++ .+|..+.... +|+.|++++|.+.+..|
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred CCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 05166-6478898898989899403-033756510236868985298275-44665533345766889774885788652
Q ss_pred CCCC-------CCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-------CCCEEECCCCC
Q ss_conf 4344-------565455420147733456887733546751899237866787898766766-------54189467875
Q 002759 307 LSIT-------NCRNLKVLDLGFNRLIGSIPTGITDLRRLLKISLANNSIGGIIPPNLGSIE-------LLEVLDLHNLN 372 (884)
Q Consensus 307 ~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~L~~n~ 372 (884)
..+. .+++|+.|+|++|+++...+..+..+++|++|+|++|+++.+.+..+.... +|+.|++++|+
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred HHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCC
T ss_conf 44200220112589888897727966867878871589889898979978873978840440012214773389896993
Q ss_pred CCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEE------CCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 7878886774--7788868852375478986111118855747871------3764678899564599999979854883
Q 002759 373 LRGEVPDDIS--NCRFLLLLDVSGNALGGDIPQTLYNMTYLKILDL------HQNHLNGSTPPSLGNLSNLQVLDLSQNS 444 (884)
Q Consensus 373 l~~~~~~~~~--~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l------~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 444 (884)
++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+.|+|++|+
T Consensus 500 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 500 LT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CC-CCCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 88-16854534458876989898998877-68235308887878898886656673121273778569987889898994
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 577569976766756389845883755
Q 002759 445 LSGSIPSSLGNLRNLTHFNLSSNNLSG 471 (884)
Q Consensus 445 l~~~~p~~~~~l~~L~~L~ls~N~l~~ 471 (884)
+ +.+|..+. ++|+.|++++|++.+
T Consensus 578 l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 578 I-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp C-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred C-CCCCHHHH--CCCCEEECCCCCCCC
T ss_conf 7-70597683--867899876998763
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=476.29 Aligned_cols=431 Identities=19% Similarity=0.258 Sum_probs=370.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CC-CCCC------------CCEEECCCCCEEEEEECCCCCCCC
Q ss_conf 89642799999988305889988656866899-----99-7877------------604966999777999267534543
Q 002759 26 ASAATDKEILLQFKGNITDDPHNKLASWVSSG-----NP-CENF------------KGVFCNPDGFVDRIVLWNFSLGGV 87 (884)
Q Consensus 26 ~~~~~~~~~ll~~k~~~~~~~~~~~~sW~~~~-----~~-c~~w------------~gv~C~~~~~v~~l~l~~~~l~g~ 87 (884)
+....|++||++||+++. +| +|+.++ ++ ||.| .||+|+..++|++++|.+.++.|.
T Consensus 265 ~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp CHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEE
T ss_pred CCCHHHHHHHHHHHHHCC-CC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCC
T ss_conf 463178999999999737-99-----988689865336776403466654533576842836999798998724789994
Q ss_pred CCCCCCCCCCCCEEEE-CCCCCCCC-------------------------------------------------------
Q ss_conf 5412238888885750-17737456-------------------------------------------------------
Q 002759 88 LSPALSGLKSLRVLTL-FGNRFTGN------------------------------------------------------- 111 (884)
Q Consensus 88 ~~~~l~~l~~L~~L~L-~~n~~~~~------------------------------------------------------- 111 (884)
+|++++.|++|++|+| ++|.+.|.
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 85577415556284301256335666422234454411567888777666654203751115678787765073324322
Q ss_pred ---------------------CCHHHHCCCCCEEEECCCCCCCC-----------------CCCCCCC--CCCCCCEEEC
Q ss_conf ---------------------96111201479076158897889-----------------9885578--9998545728
Q 002759 112 ---------------------LPQEYAEMQTLWKINVSSNALSG-----------------SIPEFIG--DLPNIRLLDL 151 (884)
Q Consensus 112 ---------------------~p~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~L 151 (884)
+|..|+++++|++|+|++|.+++ .+|..++ ++++|++|+|
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred CCCCCCHHHCEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEC
T ss_conf 23544231204056667615211887569998789796886788746532233222222445874440255999778987
Q ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCC-CCC-CCCCCCCCCC-------CCCEEECCCCCCCCCCCC--CCCCCCCCC
Q ss_conf 89866798862433104668499846885-578-7563343568-------888267224878899898--778899533
Q 002759 152 SRNSYSGEIPFALFKYCYKTKFVSLSHNN-LSG-SIPLSIANCT-------YLEGFDFSFNNLSGELPS--QICNIPVLD 220 (884)
Q Consensus 152 s~n~~~g~ip~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~Ls~N~l~~~~p~--~l~~l~~L~ 220 (884)
++|++.+.+|.. +..+++|+.|++++|+ +++ .+|..+++++ +|++|+|++|+++ .+|. .+.++++|+
T Consensus 499 s~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 499 YNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp ESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred CCCCCCCCCHHH-HHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CCCCHHHHHCCCCCC
T ss_conf 189887527387-737999899989689876566461778752330155688319982289477-618723551589889
Q ss_pred EEECCCCCCCCCCCCCCCCCCEECEEECCCCCCCCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCCCC--CCEEECC
Q ss_conf 8983278467975211135780148985888458868888889998-658994427322655442346888--8287057
Q 002759 221 FISVRGNALTGTVEEQFSQCQSIKNLDLSSNLFIGLAPFGVLGLKN-ISYFNVSHNGFHGEIPEVGICGEG--MQVFDAS 297 (884)
Q Consensus 221 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~~--L~~L~l~ 297 (884)
.|+|++|.++ .+| .|..+++|+.|+|++|.+. ..|..+..+++ |+.|+|++|+++ .+|..+..... |+.|+++
T Consensus 577 ~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp EEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred EEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCEEECC
T ss_conf 8989799825-621-2247985007987187125-035877525114989998499787-47644522556777889770
Q ss_pred CCCCCCCCCCCC---C--CCCCCCEECCCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCCCCC--------CCCC
Q ss_conf 786789788434---4--56545542014773345688773-35467518992378667878987667--------6654
Q 002759 298 WNEFDGVIPLSI---T--NCRNLKVLDLGFNRLIGSIPTGI-TDLRRLLKISLANNSIGGIIPPNLGS--------IELL 363 (884)
Q Consensus 298 ~n~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~--------l~~L 363 (884)
+|++.+.+|... . .+++|+.|+|++|.+. .+|..+ ..+++|+.|+|++|+++ .+|..+.. +++|
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGC
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCC
T ss_conf 8847886432000000135797688983199688-659788713898899989899688-54967845553343214871
Q ss_pred CEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEECC------CCCCCCCCCCCCCCCCC
Q ss_conf 1894678757878886774--778886885237547898611111885574787137------64678899564599999
Q 002759 364 EVLDLHNLNLRGEVPDDIS--NCRFLLLLDVSGNALGGDIPQTLYNMTYLKILDLHQ------NHLNGSTPPSLGNLSNL 435 (884)
Q Consensus 364 ~~L~L~~n~l~~~~~~~~~--~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~------N~l~~~~~~~~~~l~~L 435 (884)
+.|+|++|+++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++ |.+.+.+|..+..+++|
T Consensus 731 ~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred CEEECCCCCCC-CCHHHHHHCCCCCCCEEEECCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 58988899786-65277624427986989908997876-10566159998899887997766563244486888369987
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 9798548835775699767667563898458837555783
Q 002759 436 QVLDLSQNSLSGSIPSSLGNLRNLTHFNLSSNNLSGTIPS 475 (884)
Q Consensus 436 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 475 (884)
+.|+|++|++ +.+|..+. ++|+.|++++|++...-+.
T Consensus 809 ~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 809 IQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp CEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred CEEECCCCCC-CCCCHHHC--CCCCEEECCCCCCCCCCHH
T ss_conf 8898879978-74087662--8778899979988811767
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=437.82 Aligned_cols=408 Identities=30% Similarity=0.443 Sum_probs=282.4
Q ss_pred CEEEEEECCCCCCCCCCC--CCCCCCCCCEEEECCCCCCCCCCHHH-HCCCCCEEEECCCCCCCCCCCCC---CCCCCCC
Q ss_conf 777999267534543541--22388888857501773745696111-20147907615889788998855---7899985
Q 002759 73 FVDRIVLWNFSLGGVLSP--ALSGLKSLRVLTLFGNRFTGNLPQEY-AEMQTLWKINVSSNALSGSIPEF---IGDLPNI 146 (884)
Q Consensus 73 ~v~~l~l~~~~l~g~~~~--~l~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L 146 (884)
..+.+++.++.+.|.++. .++.+++|++|+|++|.+.+.+|..+ .++++|++|+|++|.+++..|.. +..+++|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L 180 (768)
T 3rgz_A 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180 (768)
T ss_dssp TCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTC
T ss_pred CCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 89989898985787078967872788999898968826774797785638899989897983588587155664358988
Q ss_pred CEEECCCCCCCCCCCHHH--------------------HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 457288986679886243--------------------310466849984688557875633435688882672248788
Q 002759 147 RLLDLSRNSYSGEIPFAL--------------------FKYCYKTKFVSLSHNNLSGSIPLSIANCTYLEGFDFSFNNLS 206 (884)
Q Consensus 147 ~~L~Ls~n~~~g~ip~~~--------------------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 206 (884)
++|++++|.+.+.+|..- +..+++|++|++++|++++.+|..++++++|++|++++|.+.
T Consensus 181 ~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 181 KHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp CEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE
T ss_pred CEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 98989788034657845478689898928827887711126999998979488587816577744888898989888665
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CEECEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC-
Q ss_conf 9989877889953389832784679752111357-80148985888458868888889998658994427322655442-
Q 002759 207 GELPSQICNIPVLDFISVRGNALTGTVEEQFSQC-QSIKNLDLSSNLFIGLAPFGVLGLKNISYFNVSHNGFHGEIPEV- 284 (884)
Q Consensus 207 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~- 284 (884)
+.+|.. .+++|+.|++++|.+++.+|..+... ++|++|++++|.+++..|..+..+++|++|++++|++.+.+|..
T Consensus 261 ~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~ 338 (768)
T 3rgz_A 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338 (768)
T ss_dssp ESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH
T ss_pred CCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 716724--368789897917855772588888446868899896896778423677558776677897885257379788
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEECCCCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 34688882870577867897884344565-4554201477334568877335--46751899237866787898766766
Q 002759 285 GICGEGMQVFDASWNEFDGVIPLSITNCR-NLKVLDLGFNRLIGSIPTGITD--LRRLLKISLANNSIGGIIPPNLGSIE 361 (884)
Q Consensus 285 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~ 361 (884)
+..+.+|+.|++++|.+.+.+|..+.+++ +|+.|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+..++
T Consensus 339 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 72488887884847843762309898632277199862787478767666533247761898977846542487775689
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 54189467875787888677477888688523754789861111188557478713764678899564599999979854
Q 002759 362 LLEVLDLHNLNLRGEVPDDISNCRFLLLLDVSGNALGGDIPQTLYNMTYLKILDLHQNHLNGSTPPSLGNLSNLQVLDLS 441 (884)
Q Consensus 362 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~ 441 (884)
+|+.|++++|++++..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|+|+
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 87989895884668546777449988989897881547189788287773299901995137588788169989989753
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 88357756997676675638984588375557830002686
Q 002759 442 QNSLSGSIPSSLGNLRNLTHFNLSSNNLSGTIPSTIQHFGV 482 (884)
Q Consensus 442 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~ 482 (884)
+|++++.+|..+..+++|+.|++++|+++|.+|..+..+..
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCC
T ss_conf 99518968768856899998989789433748877708898
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=423.19 Aligned_cols=431 Identities=21% Similarity=0.206 Sum_probs=314.0
Q ss_pred CCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC-CHHHHCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 776049669997779992675345435412238888885750177374569-6111201479076158897889988557
Q 002759 62 NFKGVFCNPDGFVDRIVLWNFSLGGVLSPALSGLKSLRVLTLFGNRFTGNL-PQEYAEMQTLWKINVSSNALSGSIPEFI 140 (884)
Q Consensus 62 ~w~gv~C~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l 140 (884)
+|..|.+ -...+..+++.++.+.+..+..+..+++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..|
T Consensus 15 ~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 15 NLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp CSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCCCC-CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHC
T ss_conf 9777898-999868888877867832966776621370886789977444197785378778888798995853197671
Q ss_pred CCCCCCCEEECCCCCCCCCCCH-HHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCC--
Q ss_conf 8999854572889866798862-433104668499846885578756-334356888826722487889989877889--
Q 002759 141 GDLPNIRLLDLSRNSYSGEIPF-ALFKYCYKTKFVSLSHNNLSGSIP-LSIANCTYLEGFDFSFNNLSGELPSQICNI-- 216 (884)
Q Consensus 141 ~~l~~L~~L~Ls~n~~~g~ip~-~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-- 216 (884)
+.+++|++|+|++|.+++.+|. ..+..+++|+.|++++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCC
T ss_conf 57866587017678897340467645566799988898786423256655763889898989898477667887535567
Q ss_pred CC------------------------------CCEEECCCCCCCCCCCCCCCC---------------------------
Q ss_conf 95------------------------------338983278467975211135---------------------------
Q 002759 217 PV------------------------------LDFISVRGNALTGTVEEQFSQ--------------------------- 239 (884)
Q Consensus 217 ~~------------------------------L~~L~L~~n~l~~~~~~~~~~--------------------------- 239 (884)
++ |+.|++++|.+++..+..+..
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCC
T ss_conf 75035789788666554553322377223574007965788686567788876427441001121212234664445668
Q ss_pred -----------CCEECEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf -----------780148985888458868888889998658994427322655442346888828705778678978843
Q 002759 240 -----------CQSIKNLDLSSNLFIGLAPFGVLGLKNISYFNVSHNGFHGEIPEVGICGEGMQVFDASWNEFDGVIPLS 308 (884)
Q Consensus 240 -----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 308 (884)
.++|+.|++++|.+.+..+..+..+++|+.|+|++|++++..+..+..+.+|+.|++++|.+.+..+..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred CCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 89855652555478618989799455158634525899999989798189879688368889998989899788518788
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC------------------C---------------
Q ss_conf 4456545542014773345688773354675189923786678789------------------8---------------
Q 002759 309 ITNCRNLKVLDLGFNRLIGSIPTGITDLRRLLKISLANNSIGGIIP------------------P--------------- 355 (884)
Q Consensus 309 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------~--------------- 355 (884)
|..+++|+.|++++|.+.+..+..|..+++|+.|+|++|.+++... .
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred HCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 46899999898989987762866613788899988989977861688982320058997231455455431221456753
Q ss_pred -------CCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCC-----CCCCHHHCCCCCCCEEEECCCCCC
Q ss_conf -------766766541894678757878886-7747788868852375478-----986111118855747871376467
Q 002759 356 -------NLGSIELLEVLDLHNLNLRGEVPD-DISNCRFLLLLDVSGNALG-----GDIPQTLYNMTYLKILDLHQNHLN 422 (884)
Q Consensus 356 -------~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~N~l~-----~~~p~~~~~l~~L~~L~l~~N~l~ 422 (884)
.+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++ +..+..|..+++|+.|+|++|.++
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 493 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHT
T ss_pred CCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
T ss_conf 45755666512776666667787125555433356687310024777736441013553555447553657778898565
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899564599999979854883577569976766756389845883755578300026863322578998999
Q 002759 423 GSTPPSLGNLSNLQVLDLSQNSLSGSIPSSLGNLRNLTHFNLSSNNLSGTIPSTIQHFGVSTFLNNTGLCGPP 495 (884)
Q Consensus 423 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~n~~~c~~~ 495 (884)
+..+..|..+++|+.|+|++|++++..+..+. ++|+.|++++|++++.+|..+..+......+|+..|..+
T Consensus 494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECE 564 (844)
T ss_dssp TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSS
T ss_pred CCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHCCCCEEEECCCCCCCCCC
T ss_conf 53955704501221569999978745710110--045588898884788896683776889931997025366
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=405.20 Aligned_cols=416 Identities=19% Similarity=0.206 Sum_probs=249.7
Q ss_pred CCCEEECCC----------CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCEEEECCCCCC
Q ss_conf 760496699----------9777999267534543541223888888575017737456961112014790761588978
Q 002759 63 FKGVFCNPD----------GFVDRIVLWNFSLGGVLSPALSGLKSLRVLTLFGNRFTGNLPQEYAEMQTLWKINVSSNAL 132 (884)
Q Consensus 63 w~gv~C~~~----------~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l 132 (884)
+..|.|... ..+..+++.++.+.+..+..+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCC
T ss_conf 72377777980628677898675898158734717966725676652897889835524851136843367644889856
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 89988557899985457288986679886243310466849984688557875633435688882672248788998987
Q 002759 133 SGSIPEFIGDLPNIRLLDLSRNSYSGEIPFALFKYCYKTKFVSLSHNNLSGSIPLSIANCTYLEGFDFSFNNLSGELPSQ 212 (884)
Q Consensus 133 ~~~~p~~l~~l~~L~~L~Ls~n~~~g~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 212 (884)
++..|..++.+++|++|++++|.++ .++...+..+++|++|++++|++++.....+..+++|++|++++|.+++..+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCC-CCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 5458655234421537652126766-578101223782238988798341147654568765687776568445549656
Q ss_pred CCCCCCCC--EEECCCCCCCCCCCCCCCCC--------------------------------------------------
Q ss_conf 78899533--89832784679752111357--------------------------------------------------
Q 002759 213 ICNIPVLD--FISVRGNALTGTVEEQFSQC-------------------------------------------------- 240 (884)
Q Consensus 213 l~~l~~L~--~L~L~~n~l~~~~~~~~~~l-------------------------------------------------- 240 (884)
+..+++|+ .|++++|.+++..+..|...
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHH
T ss_conf 33221564038966798147548667300100135567726677776513356442200201102641226866743032
Q ss_pred -CEECEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf -8014898588845886888888999865899442732265544234688882870577867897884344565455420
Q 002759 241 -QSIKNLDLSSNLFIGLAPFGVLGLKNISYFNVSHNGFHGEIPEVGICGEGMQVFDASWNEFDGVIPLSITNCRNLKVLD 319 (884)
Q Consensus 241 -~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 319 (884)
.+|+.|++++|.+.++.+..|..+++|++|++++|+++ .+|..+..+.+|+.|++++|.+.+..|..+..+++|+.|+
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred CCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf 075059994457658557777445667888956288267-7782141654688897716876867602330157689888
Q ss_pred CCCC-------------------------CCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 1477-------------------------334568--8773354675189923786678789876676654189467875
Q 002759 320 LGFN-------------------------RLIGSI--PTGITDLRRLLKISLANNSIGGIIPPNLGSIELLEVLDLHNLN 372 (884)
Q Consensus 320 L~~N-------------------------~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~ 372 (884)
+++| .+.+.. +..+..+++|++|++++|++.+..+..+..+++|+.|++++|+
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 98997444346245506675898878899666456752210567888989898996775788873477457768788886
Q ss_pred CCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 78788867-74778886885237547898611111885574787137646788---995645999999798548835775
Q 002759 373 LRGEVPDD-ISNCRFLLLLDVSGNALGGDIPQTLYNMTYLKILDLHQNHLNGS---TPPSLGNLSNLQVLDLSQNSLSGS 448 (884)
Q Consensus 373 l~~~~~~~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~ 448 (884)
+.+..+.. +..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++.
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
T ss_conf 77756521241765588898989855776877873788788898989988854345431240488766887999966706
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 69976766756389845883755578300026
Q 002759 449 IPSSLGNLRNLTHFNLSSNNLSGTIPSTIQHF 480 (884)
Q Consensus 449 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~ 480 (884)
.|..+..+++|+.|++++|++++..|..+..+
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 86463265678889898980686896684756
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=403.51 Aligned_cols=416 Identities=19% Similarity=0.198 Sum_probs=313.0
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 97779992675345435412238888885750177374569611120147907615889788998855789998545728
Q 002759 72 GFVDRIVLWNFSLGGVLSPALSGLKSLRVLTLFGNRFTGNLPQEYAEMQTLWKINVSSNALSGSIPEFIGDLPNIRLLDL 151 (884)
Q Consensus 72 ~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 151 (884)
..+..+++.++.+.+..+..+..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC----EEECCC
Q ss_conf 89866798862433104668499846885578-7563343568888267224878899898778899533----898327
Q 002759 152 SRNSYSGEIPFALFKYCYKTKFVSLSHNNLSG-SIPLSIANCTYLEGFDFSFNNLSGELPSQICNIPVLD----FISVRG 226 (884)
Q Consensus 152 s~n~~~g~ip~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~L~~ 226 (884)
++|.+. .++...+..+.+|++|++++|.+.+ .+|..++++++|++|++++|++++..+..++.+++|+ .|++++
T Consensus 112 ~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 112 VETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred CCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCC
T ss_conf 377555-4451134898877989687885232530686732677778876688531057334121203420024300468
Q ss_pred CCCCCCCCCCCCC-------------------------------------------------------------------
Q ss_conf 8467975211135-------------------------------------------------------------------
Q 002759 227 NALTGTVEEQFSQ------------------------------------------------------------------- 239 (884)
Q Consensus 227 n~l~~~~~~~~~~------------------------------------------------------------------- 239 (884)
|.+++..+..+..
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCC
T ss_conf 97532571105676043352467856166778886026656523141111036774102681776666543474501236
Q ss_pred -------------CCEECEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC--------------------CCC
Q ss_conf -------------78014898588845886888888999865899442732265544--------------------234
Q 002759 240 -------------CQSIKNLDLSSNLFIGLAPFGVLGLKNISYFNVSHNGFHGEIPE--------------------VGI 286 (884)
Q Consensus 240 -------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------~~~ 286 (884)
+++|+.|++++|.+..+. .+..+++|+.|++++|++ +.+|. .+.
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~ 347 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKV 347 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCHHHH--HCCCCCCCCEEECCCCCC-CCCCCCCCCCCCEEECCCCCCCCCHHHC
T ss_conf 6555543222354887898771476604435--433401177897646667-6546678875564454478685310002
Q ss_pred CCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCC
Q ss_conf 688882870577867897--88434456545542014773345688773354675189923786678789-876676654
Q 002759 287 CGEGMQVFDASWNEFDGV--IPLSITNCRNLKVLDLGFNRLIGSIPTGITDLRRLLKISLANNSIGGIIP-PNLGSIELL 363 (884)
Q Consensus 287 ~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L 363 (884)
..++|+.|++++|.+.+. .+..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..+ ..+..+++|
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCC
T ss_conf 4898887977587368775201221467755486788995300-055406888889658988705875376456462137
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 1894678757878886774778886885237547898-611111885574787137646788995645999999798548
Q 002759 364 EVLDLHNLNLRGEVPDDISNCRFLLLLDVSGNALGGD-IPQTLYNMTYLKILDLHQNHLNGSTPPSLGNLSNLQVLDLSQ 442 (884)
Q Consensus 364 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~ 442 (884)
+.|++++|.+.+..|..+.++++|+.|++++|.+++. +|..+..+++|+.|++++|.+++..|..+..+++|+.|+|++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 88989689787433555347787898989898379854677604578899898988857764865615464689898989
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC----CCCCCCCCCCCC
Q ss_conf 835775699767667563898458837555783000268----633225789989
Q 002759 443 NSLSGSIPSSLGNLRNLTHFNLSSNNLSGTIPSTIQHFG----VSTFLNNTGLCG 493 (884)
Q Consensus 443 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~----~~~~~~n~~~c~ 493 (884)
|++++.+|..+..+++|+.|++++|+++ .+|..+..++ .....+|+..|.
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCC
T ss_conf 9578748777068876898889898376-66876752102174887628986647
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=400.21 Aligned_cols=427 Identities=17% Similarity=0.173 Sum_probs=315.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CCCC-CEE-ECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 89642799999988305889988656866899997---8776-049-669997779992675345435412238888885
Q 002759 26 ASAATDKEILLQFKGNITDDPHNKLASWVSSGNPC---ENFK-GVF-CNPDGFVDRIVLWNFSLGGVLSPALSGLKSLRV 100 (884)
Q Consensus 26 ~~~~~~~~~ll~~k~~~~~~~~~~~~sW~~~~~~c---~~w~-gv~-C~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~ 100 (884)
...+.+...-.++++-...- .-.+|...++.| ++|. +.. |.. |.-..|.+.+ -.+++.
T Consensus 23 ~~~~~~~~d~~aL~~~~~~~---~~~~w~~~~~~~~~~~~W~~~~~~c~w-~~~~GV~C~~-------------~~~V~~ 85 (636)
T 4eco_A 23 SRTAEYIKDYLALKEIWDAL---NGKNWSQQGFGTQPGANWNFNKELDMW-GAQPGVSLNS-------------NGRVTG 85 (636)
T ss_dssp CCCCHHHHHHHHHHHHHHHT---TGGGCCCCC------CCCCCSSCGGGT-TCCTTEEECT-------------TCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEECC-------------CCCEEE
T ss_conf 55566778899999999975---899745477677657887779980001-4779848767-------------897889
Q ss_pred EEECCCCCCCCCCHHHHCCCCCEEEECCCCCC------------------------------------------------
Q ss_conf 75017737456961112014790761588978------------------------------------------------
Q 002759 101 LTLFGNRFTGNLPQEYAEMQTLWKINVSSNAL------------------------------------------------ 132 (884)
Q Consensus 101 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l------------------------------------------------ 132 (884)
|+|++|++.|.+|.++++++.|++|+|++|.+
T Consensus 86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l 165 (636)
T 4eco_A 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165 (636)
T ss_dssp EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EEECCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 98427665772885785684511898768851237743345323567338888888765777554117066677887777
Q ss_pred ------------------------------CCCCCCCCCCCCCCCEEECCCCCCCCC-----------------CCHHHH
Q ss_conf ------------------------------899885578999854572889866798-----------------862433
Q 002759 133 ------------------------------SGSIPEFIGDLPNIRLLDLSRNSYSGE-----------------IPFALF 165 (884)
Q Consensus 133 ------------------------------~~~~p~~l~~l~~L~~L~Ls~n~~~g~-----------------ip~~~~ 165 (884)
++ +|..++++++|++|+|++|.++|. +|..+.
T Consensus 166 ~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244 (636)
T ss_dssp HHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHH
T ss_conf 64275546541013344213001013677750-78777256478789886882366423221222221001024863220
Q ss_pred -HCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCCCCCCCC------CCCCEEECCCCCCCCCCCC-
Q ss_conf -104668499846885578756334356888826722487-889-989877889------9533898327846797521-
Q 002759 166 -KYCYKTKFVSLSHNNLSGSIPLSIANCTYLEGFDFSFNN-LSG-ELPSQICNI------PVLDFISVRGNALTGTVEE- 235 (884)
Q Consensus 166 -~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~~~- 235 (884)
..+++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|+.|++++|+++ .+|.
T Consensus 245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~ 323 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE 323 (636)
T ss_dssp GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH
T ss_pred HCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCH
T ss_conf 04468788898048857762838883499978897847988766533578875430465788888989799377-66765
Q ss_pred -CCCCCCEECEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCC
Q ss_conf -1135780148985888458868888889998658994427322655442346888-82870577867897884344565
Q 002759 236 -QFSQCQSIKNLDLSSNLFIGLAPFGVLGLKNISYFNVSHNGFHGEIPEVGICGEG-MQVFDASWNEFDGVIPLSITNCR 313 (884)
Q Consensus 236 -~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~ 313 (884)
.+..+++|+.|++++|.+.+..| .+..+++|++|++++|+++ .+|..+....+ |+.|++++|.+. .+|..+..+.
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~ 400 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS 400 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC
T ss_pred HHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCC
T ss_conf 554257888989690880705166-6478898898989899403-033756510236868985298275-4466553334
Q ss_pred --CCCEECCCCCCCCCCCCCCCC-------CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf --455420147733456887733-------54675189923786678789876676654189467875787888677477
Q 002759 314 --NLKVLDLGFNRLIGSIPTGIT-------DLRRLLKISLANNSIGGIIPPNLGSIELLEVLDLHNLNLRGEVPDDISNC 384 (884)
Q Consensus 314 --~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 384 (884)
+|+.|++++|.+.+.+|..+. .+++|+.|++++|+++.+.+..+..+++|+.|++++|+++...+..+...
T Consensus 401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480 (636)
T ss_dssp SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 57668897748857886524420022011258988889772796686787887158988989897997887397884044
Q ss_pred C-------CCCEEECCCCCCCCCCCHHHC--CCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEC------CCCCCCCCC
Q ss_conf 8-------886885237547898611111--8855747871376467889956459999997985------488357756
Q 002759 385 R-------FLLLLDVSGNALGGDIPQTLY--NMTYLKILDLHQNHLNGSTPPSLGNLSNLQVLDL------SQNSLSGSI 449 (884)
Q Consensus 385 ~-------~L~~L~ls~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~ 449 (884)
. +|+.|++++|.++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|+| ++|.+.+.+
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~ 558 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred CCCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 001221477338989699388-16854534458876989898998877-6823530888787889888665667312127
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 9976766756389845883755578300
Q 002759 450 PSSLGNLRNLTHFNLSSNNLSGTIPSTI 477 (884)
Q Consensus 450 p~~~~~l~~L~~L~ls~N~l~~~~p~~~ 477 (884)
|..+..+++|+.|++++|++ +.+|..+
T Consensus 559 p~~l~~l~~L~~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 559 PEGITLCPSLTQLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred HHHHHCCCCCCEEECCCCCC-CCCCHHH
T ss_conf 37785699878898989947-7059768
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=398.66 Aligned_cols=182 Identities=15% Similarity=0.108 Sum_probs=91.0
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 99926753454354122388888857501773745696111201479076158897889988557899985457288986
Q 002759 76 RIVLWNFSLGGVLSPALSGLKSLRVLTLFGNRFTGNLPQEYAEMQTLWKINVSSNALSGSIPEFIGDLPNIRLLDLSRNS 155 (884)
Q Consensus 76 ~l~l~~~~l~g~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 155 (884)
.+++.+.++.. +|..+.. .+++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+.+++|++|+|++|+
T Consensus 16 ~~~c~~~~l~~-iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLNE-IPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCSS-CCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCCCC-CCCCCCC--CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC
T ss_conf 37777798062-8677898--67589815873471796672567665289788983552485113684336764488985
Q ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 67988624331046684998468855787563343568888267224878899898778899533898327846797521
Q 002759 156 YSGEIPFALFKYCYKTKFVSLSHNNLSGSIPLSIANCTYLEGFDFSFNNLSGELPSQICNIPVLDFISVRGNALTGTVEE 235 (884)
Q Consensus 156 ~~g~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 235 (884)
++ .++...+..+++|++|++++|++++..+..++++++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+.
T Consensus 93 l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CS-EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred CC-CCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHH
T ss_conf 65-45865523442153765212676657810122378223898879834114765456876568777656844554965
Q ss_pred CCCCCCEEC--EEECCCCCCCCCCCCCC
Q ss_conf 113578014--89858884588688888
Q 002759 236 QFSQCQSIK--NLDLSSNLFIGLAPFGV 261 (884)
Q Consensus 236 ~~~~l~~L~--~L~L~~N~l~~~~~~~~ 261 (884)
.|..+++|+ .|++++|.+.++.+..+
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCHHHH
T ss_conf 6332215640389667981475486673
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=397.11 Aligned_cols=423 Identities=20% Similarity=0.181 Sum_probs=325.5
Q ss_pred CEEEEEECCCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCC--CCCCCCCCEE
Q ss_conf 7779992675345435-412238888885750177374569611120147907615889788998855--7899985457
Q 002759 73 FVDRIVLWNFSLGGVL-SPALSGLKSLRVLTLFGNRFTGNLPQEYAEMQTLWKINVSSNALSGSIPEF--IGDLPNIRLL 149 (884)
Q Consensus 73 ~v~~l~l~~~~l~g~~-~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L 149 (884)
....+++.++...+.+ +..+..+++|++|+|++|.+.+..|..|+++++|++|+|++|.+++.+|.. ++.+++|++|
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred CCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 37088678997744419778537877888879899585319767157866587017678897340467645566799988
Q ss_pred ECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC--CC------------------------------CCE
Q ss_conf 2889866798862433104668499846885578756334356--88------------------------------882
Q 002759 150 DLSRNSYSGEIPFALFKYCYKTKFVSLSHNNLSGSIPLSIANC--TY------------------------------LEG 197 (884)
Q Consensus 150 ~Ls~n~~~g~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~------------------------------L~~ 197 (884)
+|++|.+.+..+...|..+++|+.|++++|.+++..+..+..+ ++ |+.
T Consensus 129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 208 (844)
T 3j0a_A 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208 (844)
T ss_dssp EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred ECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEE
T ss_conf 89878642325665576388989898989847766788753556775035789788666554553322377223574007
Q ss_pred EECCCCCCCCCCCCCCCC--------------------------------------CCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 672248788998987788--------------------------------------995338983278467975211135
Q 002759 198 FDFSFNNLSGELPSQICN--------------------------------------IPVLDFISVRGNALTGTVEEQFSQ 239 (884)
Q Consensus 198 L~Ls~N~l~~~~p~~l~~--------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~ 239 (884)
|++++|.+++..+..+.. .++|+.|++++|.+.+..+..|..
T Consensus 209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~ 288 (844)
T 3j0a_A 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288 (844)
T ss_dssp EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS
T ss_pred EECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHC
T ss_conf 96578868656778887642744100112121223466444566889855652555478618989799455158634525
Q ss_pred CCEECEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 78014898588845886888888999865899442732265544234688882870577867897884344565455420
Q 002759 240 CQSIKNLDLSSNLFIGLAPFGVLGLKNISYFNVSHNGFHGEIPEVGICGEGMQVFDASWNEFDGVIPLSITNCRNLKVLD 319 (884)
Q Consensus 240 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 319 (884)
+++|+.|+|++|.+.++.+..|..+++|++|+|++|++++..+..+..+.+|+.|++++|++.+..+..|..+++|+.|+
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 89999998979818987968836888999898989978851878846899999898989987762866613788899988
Q ss_pred CCCCCCCCCC------------------CC----------------------CCCCCCCCCEEECCCCCCCCCCCC-CCC
Q ss_conf 1477334568------------------87----------------------733546751899237866787898-766
Q 002759 320 LGFNRLIGSI------------------PT----------------------GITDLRRLLKISLANNSIGGIIPP-NLG 358 (884)
Q Consensus 320 L~~N~l~~~~------------------~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~-~~~ 358 (884)
|++|.+++.. |. .+..+++|+.|+|++|++++..+. .+.
T Consensus 369 Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 448 (844)
T 3j0a_A 369 LRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448 (844)
T ss_dssp EETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 98997786168898232005899723145545543122145675345755666512776666667787125555433356
Q ss_pred CCCCCCEEECCCCCCC-----CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 7665418946787578-----78886774778886885237547898611111885574787137646788995645999
Q 002759 359 SIELLEVLDLHNLNLR-----GEVPDDISNCRFLLLLDVSGNALGGDIPQTLYNMTYLKILDLHQNHLNGSTPPSLGNLS 433 (884)
Q Consensus 359 ~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 433 (884)
.+++|+.|++++|.++ +..+..|.++++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+. +
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~ 526 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--A 526 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--S
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--C
T ss_conf 68731002477773644101355355544755365777889856553955704501221569999978745710110--0
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999798548835775699767667563898458837555783-0002686332257899899998888999
Q 002759 434 NLQVLDLSQNSLSGSIPSSLGNLRNLTHFNLSSNNLSGTIPS-TIQHFGVSTFLNNTGLCGPPLETSCSGR 503 (884)
Q Consensus 434 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~~~~~~~n~~~c~~~~~~~c~~~ 503 (884)
+|+.|+|++|++++..|..+. +|+.+++++|++.|.|+- ++.. .....+..+|+.|....|..+
T Consensus 527 ~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~f~~---~~~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFIN---WLNHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp CCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCCSHHH---HHHHTTTTTCCCGGGCCCSSC
T ss_pred CCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCCCHHHHH---HHHHCCCCCCCCCCCCCCCCC
T ss_conf 455888988847888966837---76889931997025366189999---997368530266002755780
Done!