Query 002760
Match_columns 884
No_of_seqs 562 out of 5390
Neff 9.8
Searched_HMMs 29240
Date Tue Mar 26 18:30:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002760.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1473-1477//hhsearch_pdb/002760hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 587.3 38.8 574 2-586 38-758 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 505.2 32.3 493 40-547 50-557 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 489.3 38.0 561 4-568 4-626 (680)
4 3t6q_A CD180 antigen; protein- 1.0 1 1 482.6 26.4 538 20-572 16-594 (606)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 477.7 28.3 545 4-571 14-594 (844)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 471.4 36.0 549 15-571 48-657 (680)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 467.9 28.8 529 20-571 15-591 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 453.0 34.4 511 44-568 16-564 (606)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 450.2 36.9 525 19-568 7-564 (844)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 439.0 29.2 513 42-568 13-562 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=587.29 Aligned_cols=574 Identities=31% Similarity=0.463 Sum_probs=378.3
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCCCCC---CCC-----------------------CCCCCCCCCEEECCCCCCCCC
Q ss_conf 872137568759999089999289997322---586-----------------------766888896888247867878
Q 002760 2 NLCQWTGVTCGQRHQRVTRLDLGNQSIRGT---LSP-----------------------YVGNLSFLRYINIASNGFNGE 55 (884)
Q Consensus 2 ~~~~~~~~~c~~~~~~v~~l~l~~~~~~~~---~~~-----------------------~l~~l~~L~~L~l~~~~i~~~ 55 (884)
+||+|.||+|. .++|+.|+|+++++.+. +|+ .++.+.+|++|+|++|.+.+.
T Consensus 38 ~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~ 115 (768)
T 3rgz_A 38 NPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP 115 (768)
T ss_dssp CGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEE
T ss_pred CCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
T ss_conf 87688413878--9927898778998677557669657316802246786888678703324578899898989857870
Q ss_pred CCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCC---CC--------------------
Q ss_conf 996--86899998899744886768578344-49999857746576655878823---34--------------------
Q 002760 56 IPH--QIGRLISLERLILSNNSFSGAIPANL-SSCSNLIELSADSNNLVGEIPAD---IG-------------------- 109 (884)
Q Consensus 56 ~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~---~~-------------------- 109 (884)
+|. .++.+++|++|+|++|.+++..|..+ .++++|++|++++|.+.+..|.. +.
T Consensus 116 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 195 (768)
T 3rgz_A 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195 (768)
T ss_dssp GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred CCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC
T ss_conf 78967872788999898968826774797785638899989897983588587155664358988989897880346578
Q ss_pred --CCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf --62234411122332489999345798887588820430123-234324454435464212336788995445788611
Q 002760 110 --SLFKLERLSIFQNHITGQLPASIGNLSSLRVIDVRENRLWG-RIDSLGQLKSLTLLSVAFNQFSGMIPPSIFNISSLE 186 (884)
Q Consensus 110 --~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 186 (884)
.+++|++|++++|.+.+..|. ++.+++|++|++++|.+.. .+..+..+++|++|++++|.+.+..|.. .+++|+
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCC
T ss_conf 45478689898928827887711-126999998979488587816577744888898989888665716724--368789
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCC-CCCCCCCCCCCCCCEEECCC
Q ss_conf 99810453235689888988877755735787222327734625777650023446344-57654446555432330532
Q 002760 187 VISLSENRFTGSLPVDTGVNLPSLRELRTNANNFTGFIPVSLSNASSLEMIEFSKNQFS-GGVSVDFSRLKNLYWLNLGI 265 (884)
Q Consensus 187 ~L~L~~n~i~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~ 265 (884)
.|++++|.+.+.+|...+..+++|+.|++++|.+....|..+..+++|+.|++++|.+. .++...+..+++|+.|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCC
T ss_conf 89791785577258888844686889989689677842367755877667789788525737978872488887884847
Q ss_pred CCCCCCCCCHHHHH-------------------HHHCC--CCCCCEEECCCCCCCCCCCCHHHCCCHHHHHHCCCCCCCC
Q ss_conf 34699999703466-------------------53127--8899499846885567889201100010431102688321
Q 002760 266 NNLGTGAANELDFI-------------------NLLTN--CSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRIS 324 (884)
Q Consensus 266 N~l~~~~~~~~~~~-------------------~~l~~--l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~l~~n~l~ 324 (884)
|.+.......+... ..+.. ++.|+.|++++|.+.+.+|..+..++ .|+.|++++|.++
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLS 431 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEE
T ss_pred CCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCC-CCCEEECCCCCCC
T ss_conf 843762309898632277199862787478767666533247761898977846542487775689-8798989588466
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 13792226878874999324888866892337999999998648879998887667656576897326515422798986
Q 002760 325 GTIPPEIRNLASLNWLTIDTNQLTGTIPPEIGELTNLQQLDLDRNFLQGSIPSSLGNLTLLTYLKLGLNNLEGNIPSSLG 404 (884)
Q Consensus 325 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 404 (884)
+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..|..+.
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 85467774499889898978815471897882877732999019951375887881699899897539951896876885
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCC--------------------------------------
Q ss_conf 865433211346312376533223211000112037744798--------------------------------------
Q 002760 405 NCTNLLGLNISHNKLIGTLPRQILRITTLSLYLELGNNLLNG-------------------------------------- 446 (884)
Q Consensus 405 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~l~~n~l~~-------------------------------------- 446 (884)
.+++|+.|++++|++.+.+|..+.....+ .+|++++|.+.+
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred CCCCCCEEECCCCCCCCCCCHHHCCCCCC-CEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 68999989897894337488777088989-98989888468827957860421223201345421111344432222332
Q ss_pred --------------------------------CCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf --------------------------------999664477766779637997988860332114355412233758761
Q 002760 447 --------------------------------SLPPEVGNLKNLMRLDLSGNKFSGEIPATLSACANLEYLNISGNAFSG 494 (884)
Q Consensus 447 --------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 494 (884)
..|..+..+++|+.|+|++|++++.+|..|+.+++|+.|+|++|++++
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 22100135563232002321100113310046274334033566579785880155587788414157878486880388
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 25810358666563303576203666523537786661532686171015999865666544102797435898767888
Q 002760 495 SIPLLLDSLQSIKELDFSSNNLNGQIPEYLENLSFLEFLNLSYNHFEGEVPMKGVFNNKTRFSIAGNGKLCGGLDELRLP 574 (884)
Q Consensus 495 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~~~~ 574 (884)
.+|..+..+++|+.|||++|++++.+|..+..+++|+.||+++|+++|.+|..+++..+...+|.||+.+||.| ..+
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~---l~~ 747 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP---LPR 747 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT---SCC
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCC---CCC
T ss_conf 78967847778998989788023868867757887897879688155608996010248977756983210887---767
Q ss_pred CCCCCCCCEEEE
Q ss_conf 778899500589
Q 002760 575 SCQSKGSLTILK 586 (884)
Q Consensus 575 ~~~~~~~~~~~~ 586 (884)
|.... ...|.+
T Consensus 748 C~~~~-~~~~~~ 758 (768)
T 3rgz_A 748 CDPSN-ADGYAH 758 (768)
T ss_dssp CCSCC-------
T ss_pred CCCCC-CCCCCC
T ss_conf 88876-688898
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=505.24 Aligned_cols=493 Identities=29% Similarity=0.468 Sum_probs=409.0
Q ss_pred CCCCEEECCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCC
Q ss_conf 8896888247867878---996868999988997448867685783444999985774657665587882--33462234
Q 002760 40 SFLRYINIASNGFNGE---IPHQIGRLISLERLILSNNSFSGAIPANLSSCSNLIELSADSNNLVGEIPA--DIGSLFKL 114 (884)
Q Consensus 40 ~~L~~L~l~~~~i~~~---~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L 114 (884)
..++.|+|+++.+.+. +|.++.++..|+.++++.+.+. .+|..++.+++|++|+|++|.+.+.+|. .+..+++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 92789877899867755766965731680224678688867-87033245788998989898578707896787278899
Q ss_pred CEECCCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCC-CC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 411122332489999345-79888758882043012323-43---24454435464212336788995445788611998
Q 002760 115 ERLSIFQNHITGQLPASI-GNLSSLRVIDVRENRLWGRI-DS---LGQLKSLTLLSVAFNQFSGMIPPSIFNISSLEVIS 189 (884)
Q Consensus 115 ~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~-~~---~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 189 (884)
++|++++|.+....+..+ ..+++|++|++++|.+...+ .. +.++++|++|++++|.+.+..+ +..+++|+.|+
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~ 206 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD 206 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEE
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEE
T ss_conf 9898968826774797785638899989897983588587155664358988989897880346578--45478689898
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 10453235689888988877755735787222327734625777650023446344576544465554323305323469
Q 002760 190 LSENRFTGSLPVDTGVNLPSLRELRTNANNFTGFIPVSLSNASSLEMIEFSKNQFSGGVSVDFSRLKNLYWLNLGINNLG 269 (884)
Q Consensus 190 L~~n~i~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 269 (884)
+++|.+.+.+|. +..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+.. .+++|+.|++++|.+.
T Consensus 207 Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 207 VSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282 (768)
T ss_dssp CCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEE
T ss_pred CCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCC
T ss_conf 928827887711--126999998979488587816577744888898989888665716724--3687898979178557
Q ss_pred CCCCCHHHHHHHHCC-CCCCCEEECCCCCCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCC-CCCCCCCCEEEEECCCC
Q ss_conf 999970346653127-8899499846885567889201100010431102688321137922-26878874999324888
Q 002760 270 TGAANELDFINLLTN-CSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPE-IRNLASLNWLTIDTNQL 347 (884)
Q Consensus 270 ~~~~~~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l 347 (884)
.... ..+.. +++|+.|++++|.+.+..|..+..++ .|+.|++++|.+.+.+|.. +..+++|++|++++|.+
T Consensus 283 ~~ip------~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 283 GEIP------DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp ESCC------CCSCTTCTTCSEEECCSSEEEECCCGGGGGCT-TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CCCC------HHHHHHCCCCCEEECCCCCCCCCCCHHHHCCC-CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCC
T ss_conf 7258------88884468688998968967784236775587-7667789788525737978872488887884847843
Q ss_pred CCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 866892337999-9999986488799988876676--5657689732651542279898686543321134631237653
Q 002760 348 TGTIPPEIGELT-NLQQLDLDRNFLQGSIPSSLGN--LTLLTYLKLGLNNLEGNIPSSLGNCTNLLGLNISHNKLIGTLP 424 (884)
Q Consensus 348 ~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 424 (884)
.+..|..+..++ +|+.|++++|.+++..+..+.. +++|++|++++|.+++..|..+..+++|+.|++++|++.+.+|
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 76230989863227719986278747876766653324776189897784654248777568987989895884668546
Q ss_pred HHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 32232110001120377447989996644777667796379979888603321143554122337587612581035866
Q 002760 425 RQILRITTLSLYLELGNNLLNGSLPPEVGNLKNLMRLDLSGNKFSGEIPATLSACANLEYLNISGNAFSGSIPLLLDSLQ 504 (884)
Q Consensus 425 ~~~~~~~~~~~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 504 (884)
..+..... ++.|++++|.+.+..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|++.+..|.++..++
T Consensus 436 ~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 436 SSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp GGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HHHHCCCC-CCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 77744998-89898978815471897882877732999019951375887881699899897539951896876885689
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 6563303576203666523537786661532686171015999
Q 002760 505 SIKELDFSSNNLNGQIPEYLENLSFLEFLNLSYNHFEGEVPMK 547 (884)
Q Consensus 505 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~ 547 (884)
+|+.|++++|++++..|..+..+++|+.|++++|+++|.+|..
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred CCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 9998989789433748877708898998989888468827957
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=489.31 Aligned_cols=561 Identities=21% Similarity=0.196 Sum_probs=422.2
Q ss_pred CEEEEEEECCC---------CCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 21375687599---------990899992899973225867668888968882478678789968689999889974488
Q 002760 4 CQWTGVTCGQR---------HQRVTRLDLGNQSIRGTLSPYVGNLSFLRYINIASNGFNGEIPHQIGRLISLERLILSNN 74 (884)
Q Consensus 4 ~~~~~~~c~~~---------~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~Ls~n 74 (884)
|++..|.|... -.++++|+++++.+....+..++++++|++|++++|.+++..|..|+++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred EECCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 67874487779805264124888768889899778759788717876758878899648569778740667688889998
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-
Q ss_conf 6768578344499998577465766558788233462234411122332489999345798887588820430123234-
Q 002760 75 SFSGAIPANLSSCSNLIELSADSNNLVGEIPADIGSLFKLERLSIFQNHITGQLPASIGNLSSLRVIDVRENRLWGRID- 153 (884)
Q Consensus 75 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~- 153 (884)
+++...+..|.++.+|++|++++|++....|..|..+++|++|++++|.++...+..+..+++|++|++++|.+...+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 56756854530388889898989966853966741567888898989952466721112455677797458843652978
Q ss_pred CC--CCCCCCCEEECCCCCCCCCCCCCCCCCC---------------------------CCCEEEECCCCCCCCCCCCCC
Q ss_conf 32--4454435464212336788995445788---------------------------611998104532356898889
Q 002760 154 SL--GQLKSLTLLSVAFNQFSGMIPPSIFNIS---------------------------SLEVISLSENRFTGSLPVDTG 204 (884)
Q Consensus 154 ~~--~~l~~L~~L~l~~n~l~~~~~~~l~~l~---------------------------~L~~L~L~~n~i~~~l~~~~~ 204 (884)
.+ ..+++|+.|++++|.+++..+..+..+. +|+.|++++|.+. ..+...+
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~-~~~~~~~ 242 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTF 242 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC-EECTTTT
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCC-CCCHHHH
T ss_conf 862446663217988898256558155532234455430566468056777877753151008874577436-4686675
Q ss_pred CCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC----CCHHHH
Q ss_conf 8887--7755735787222327734625777650023446344576544465554323305323469999----970346
Q 002760 205 VNLP--SLRELRTNANNFTGFIPVSLSNASSLEMIEFSKNQFSGGVSVDFSRLKNLYWLNLGINNLGTGA----ANELDF 278 (884)
Q Consensus 205 ~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~ 278 (884)
..++ +|+.|++++|.+..+.+..+..+++|+.|++++|.+.+..+..|..+++|+.|+++.|...... ...+.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~- 321 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID- 321 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC-
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCC-
T ss_conf 1467677888778788767568021167410568557788567658656267888557736331321333335545438-
Q ss_pred HHHHCCCCCCCEEECCCCCCCCCCCCHHHCCCHHHHHHCCCCCCCCC--CCCCCCCCC--CCCCEEEEECCCCCCCCCCC
Q ss_conf 65312788994998468855678892011000104311026883211--379222687--88749993248888668923
Q 002760 279 INLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISG--TIPPEIRNL--ASLNWLTIDTNQLTGTIPPE 354 (884)
Q Consensus 279 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~l~~n~l~~--~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~ 354 (884)
...+..+++|+.|++++|.+.+..+..+..+ +.++++++++|.+.. .....|..+ ++|+.|++++|.+.++.+..
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCHHHHCCC-CCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHH
T ss_conf 6562467778888798982687885574065-687289887980144323532202455686766889999777677544
Q ss_pred CCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHH
Q ss_conf 3799999999864887999888-76676565768973265154227989868654332113463123--76533223211
Q 002760 355 IGELTNLQQLDLDRNFLQGSIP-SSLGNLTLLTYLKLGLNNLEGNIPSSLGNCTNLLGLNISHNKLI--GTLPRQILRIT 431 (884)
Q Consensus 355 ~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~~~ 431 (884)
|..+++|+.|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+. +..|..+....
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
T ss_conf 20778888886778757543575532575461278448997542276455007543101101464422566776455578
Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCH--------HHHHCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 000112037744798999664477766779637997988860--------332114355412233758761258103586
Q 002760 432 TLSLYLELGNNLLNGSLPPEVGNLKNLMRLDLSGNKFSGEIP--------ATLSACANLEYLNISGNAFSGSIPLLLDSL 503 (884)
Q Consensus 432 ~~~~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 503 (884)
. ++.|++++|.+++..+..|..+++|+.|++++|+++...+ ..|.++++|+.|+|++|++..+.+..|..+
T Consensus 481 ~-L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 559 (680)
T 1ziw_A 481 N-LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559 (680)
T ss_dssp T-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred C-CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCC
T ss_conf 7-899989999877679446345534688858899730000000467741423379988888899997887797773466
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 66563303576203666523537786661532686171015999-8-65666544102797435898
Q 002760 504 QSIKELDFSSNNLNGQIPEYLENLSFLEFLNLSYNHFEGEVPMK-G-VFNNKTRFSIAGNGKLCGGL 568 (884)
Q Consensus 504 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~-~~~~~~~~~~~~n~~~c~~~ 568 (884)
++|+.|+|++|++++..+..|..+++|+.|++++|++++.++.. . .++.+..+.+.+|+|.|+|.
T Consensus 560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 6752238999977767976837898888898999968705966830114665779831897025776
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=482.64 Aligned_cols=538 Identities=18% Similarity=0.160 Sum_probs=359.2
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 99928999732258676688889688824786787899686899998899744886768578344499998577465766
Q 002760 20 RLDLGNQSIRGTLSPYVGNLSFLRYINIASNGFNGEIPHQIGRLISLERLILSNNSFSGAIPANLSSCSNLIELSADSNN 99 (884)
Q Consensus 20 ~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 99 (884)
.++.++.+++ .+|..+.. .+++|++++|.++...|.+|.++++|++|++++|++++..|..|.++.+|++|++++|+
T Consensus 16 ~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCCC-CCCCCCCC--CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC
T ss_conf 3777779806-28677898--67589815873471796672567665289788983552485113684336764488985
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 55878823346223441112233248999934579888758882043012323-43244544354642123367889954
Q 002760 100 LVGEIPADIGSLFKLERLSIFQNHITGQLPASIGNLSSLRVIDVRENRLWGRI-DSLGQLKSLTLLSVAFNQFSGMIPPS 178 (884)
Q Consensus 100 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 178 (884)
+....|..|..+++|++|++++|.++...+..+..+++|++|++++|.+..++ ..+..+++|++|++++|.++...+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 65458655234421537652126766578101223782238988798341147654568765687776568445549656
Q ss_pred CCCCCCCC--EEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC--------------------------CCCCCCCCCC
Q ss_conf 45788611--9981045323568988898887775573578722--------------------------2327734625
Q 002760 179 IFNISSLE--VISLSENRFTGSLPVDTGVNLPSLRELRTNANNF--------------------------TGFIPVSLSN 230 (884)
Q Consensus 179 l~~l~~L~--~L~L~~n~i~~~l~~~~~~~l~~L~~L~L~~n~l--------------------------~~~~~~~l~~ 230 (884)
+..+++|+ .|++++|.+. .++...+ ....|+.|++++|.. ..+.+..+..
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIA-GIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCC-EECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred HHHHCCCCEEEEECCCCCCC-CCCHHHH-HHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCH
T ss_conf 33221564038966798147-5486673-001001355677266777765133564422002011026412268667430
Q ss_pred CC--CCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHC
Q ss_conf 77--7650023446344576544465554323305323469999970346653127889949984688556788920110
Q 002760 231 AS--SLEMIEFSKNQFSGGVSVDFSRLKNLYWLNLGINNLGTGAANELDFINLLTNCSKLERLYFNRNRFEGELPHSVAN 308 (884)
Q Consensus 231 l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 308 (884)
+. +++.|++++|.+.++++..|..+++|+.|++++|.+...+ ..+..+++|+.|++++|.+.+..+..+..
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp-------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-------SGLVGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC-------SSCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred HHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC-------HHHCCCCCCCEEECCCCCCCCCCHHHHHC
T ss_conf 32075059994457658557777445667888956288267778-------21416546888977168768676023301
Q ss_pred CCHHHHHHCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 0010431102688321137-922268788749993248888668--9233799999999864887999888766765657
Q 002760 309 LSSTIKQIAMGRNRISGTI-PPEIRNLASLNWLTIDTNQLTGTI--PPEIGELTNLQQLDLDRNFLQGSIPSSLGNLTLL 385 (884)
Q Consensus 309 ~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 385 (884)
+ +.++.|++++|.+.... +..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 324 l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 324 F-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp C-TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred C-CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 5-768988898997444346245506675898878899666456752210567888989898996775788873477457
Q ss_pred CEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCC---CCCCCCCCCCCCCEE
Q ss_conf 6897326515422798-986865433211346312376533223211000112037744798---999664477766779
Q 002760 386 TYLKLGLNNLEGNIPS-SLGNCTNLLGLNISHNKLIGTLPRQILRITTLSLYLELGNNLLNG---SLPPEVGNLKNLMRL 461 (884)
Q Consensus 386 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~l~~n~l~~---~~~~~~~~l~~L~~L 461 (884)
+.|++++|.+++..+. .+..+++|+.|++++|.+.+..|..+... +.++.|++++|.+.+ ..+..+..+++|+.|
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC-TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred CEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCC-CCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEE
T ss_conf 7687888867775652124176558889898985577687787378-878889898998885434543124048876688
Q ss_pred ECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 63799798886033211435541223375876125810358666563303576203666523537786661532686171
Q 002760 462 DLSGNKFSGEIPATLSACANLEYLNISGNAFSGSIPLLLDSLQSIKELDFSSNNLNGQIPEYLENLSFLEFLNLSYNHFE 541 (884)
Q Consensus 462 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 541 (884)
++++|++++..|..|..+++|+.|++++|++++..|..+..+++| .|++++|++++..|..+..+++|+.+++++|+|.
T Consensus 482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred ECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC
T ss_conf 799996670686463265678889898980686896684756651-8987689414268766256778788967799861
Q ss_pred CCCCCCCCCCCCCCC--C-CCCCCCCCCCCCCCC
Q ss_conf 015999865666544--1-027974358987678
Q 002760 542 GEVPMKGVFNNKTRF--S-IAGNGKLCGGLDELR 572 (884)
Q Consensus 542 ~~~~~~~~~~~~~~~--~-~~~n~~~c~~~~~~~ 572 (884)
|+|+..+...++... . .......|..|..++
T Consensus 561 c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~ 594 (606)
T 3t6q_A 561 CTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLR 594 (606)
T ss_dssp CSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGT
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCEECCCHHHC
T ss_conf 6677578999997375533677887369726868
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=477.74 Aligned_cols=545 Identities=22% Similarity=0.206 Sum_probs=416.6
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 21375687599990899992899973225867668888968882478678789-96868999988997448867685783
Q 002760 4 CQWTGVTCGQRHQRVTRLDLGNQSIRGTLSPYVGNLSFLRYINIASNGFNGEI-PHQIGRLISLERLILSNNSFSGAIPA 82 (884)
Q Consensus 4 ~~~~~~~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~ 82 (884)
|.|.+|-+ ...++++|||++|.++...+..++++.+|++|++++|.....+ |.+|.++++|++|+|++|++++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 99777898--9998688888778678329667766213708867899774441977853787788887989958531976
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCEECCCCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCC-CCCCCC
Q ss_conf 4449999857746576655878823--3462234411122332489999-34579888758882043012323-432445
Q 002760 83 NLSSCSNLIELSADSNNLVGEIPAD--IGSLFKLERLSIFQNHITGQLP-ASIGNLSSLRVIDVRENRLWGRI-DSLGQL 158 (884)
Q Consensus 83 ~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~-~~~~~l 158 (884)
.+.++.+|++|+|++|.+.+..|.. +..+++|++|++++|.+++..+ ..|+++++|++|++++|.+.... ..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCC
T ss_conf 71578665870176788973404676455667999888987864232566557638898989898984776678875355
Q ss_pred --CCCCEEECCCCCCCCCCCCCCCCCCC------CCEEEECCCCCCCCCCCCCCCC--CCCCCEEECCC---------CC
Q ss_conf --44354642123367889954457886------1199810453235689888988--87775573578---------72
Q 002760 159 --KSLTLLSVAFNQFSGMIPPSIFNISS------LEVISLSENRFTGSLPVDTGVN--LPSLRELRTNA---------NN 219 (884)
Q Consensus 159 --~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~L~~n~i~~~l~~~~~~~--l~~L~~L~L~~---------n~ 219 (884)
++|+.|+++.|.+....+..+..+.+ |+.|++++|.+.+..+...... ..++..+.+.. +.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred CCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 67750357897886665545533223772235740079657886865677888764274410011212122346644456
Q ss_pred CCCCCCCCCCCC--CCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCC
Q ss_conf 223277346257--776500234463445765444655543233053234699999703466531278899499846885
Q 002760 220 FTGFIPVSLSNA--SSLEMIEFSKNQFSGGVSVDFSRLKNLYWLNLGINNLGTGAANELDFINLLTNCSKLERLYFNRNR 297 (884)
Q Consensus 220 l~~~~~~~l~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~ 297 (884)
+.......|.++ ++|+.|++++|.+....+..|..+++|+.|++++|.+..... ..+..+++|+.|++++|.
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD------EAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT------TTTTTCSSCCEEEEESCC
T ss_pred CCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCH------HHHCCCCCCCEEECCCCC
T ss_conf 68898556525554786189897994551586345258999999897981898796------883688899989898997
Q ss_pred CCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 56788920110001043110268832113792226878874999324888866892337999999998648879998887
Q 002760 298 FEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIRNLASLNWLTIDTNQLTGTIPPEIGELTNLQQLDLDRNFLQGSIPS 377 (884)
Q Consensus 298 l~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 377 (884)
+.+..+..+..++ .|+.|++++|.+....+..|..+++|+.|++++|.+++. ..+++|+.|++++|+++ ..|.
T Consensus 326 l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~ 398 (844)
T 3j0a_A 326 LGELYSSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPK 398 (844)
T ss_dssp CSCCCSCSCSSCT-TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCC
T ss_pred CCCCCHHHHCCCC-CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-----CCCCCCCHHCCCCCCCC-CCCC
T ss_conf 8851878846899-999898989987762866613788899988989977861-----68898232005899723-1455
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCC-----CCCCCC
Q ss_conf 667656576897326515422798-98686543321134631237653322321100011203774479-----899966
Q 002760 378 SLGNLTLLTYLKLGLNNLEGNIPS-SLGNCTNLLGLNISHNKLIGTLPRQILRITTLSLYLELGNNLLN-----GSLPPE 451 (884)
Q Consensus 378 ~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~l~~n~l~-----~~~~~~ 451 (884)
. ..+++.|++++|.+++.... .+..+++|+.|++++|++.+..+.........+..|++++|.+. +..+..
T Consensus 399 ~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 399 I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred C---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 4---5543122145675345755666512776666667787125555433356687310024777736441013553555
Q ss_pred CCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44777667796379979888603321143554122337587612581035866656330357620366652353778666
Q 002760 452 VGNLKNLMRLDLSGNKFSGEIPATLSACANLEYLNISGNAFSGSIPLLLDSLQSIKELDFSSNNLNGQIPEYLENLSFLE 531 (884)
Q Consensus 452 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 531 (884)
|.++++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+. ++|+.|++++|++++..|..+ ++|+
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~ 550 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLS 550 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCC
T ss_pred HCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH---CCCC
T ss_conf 44755365777889856553955704501221569999978745710110--045588898884788896683---7768
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCC--CCCCC--CCCCCCCCCCC
Q ss_conf 153268617101599986566654--41027--97435898767
Q 002760 532 FLNLSYNHFEGEVPMKGVFNNKTR--FSIAG--NGKLCGGLDEL 571 (884)
Q Consensus 532 ~l~l~~N~l~~~~~~~~~~~~~~~--~~~~~--n~~~c~~~~~~ 571 (884)
.+++++|++.|.|+..+...++.. ..+.+ ....|..|...
T Consensus 551 ~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~ 594 (844)
T 3j0a_A 551 VLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSF 594 (844)
T ss_dssp EEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSS
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf 89931997025366189999997368530266002755780665
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=471.38 Aligned_cols=549 Identities=20% Similarity=0.203 Sum_probs=446.4
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99089999289997322586766888896888247867878996868999988997448867685783444999985774
Q 002760 15 HQRVTRLDLGNQSIRGTLSPYVGNLSFLRYINIASNGFNGEIPHQIGRLISLERLILSNNSFSGAIPANLSSCSNLIELS 94 (884)
Q Consensus 15 ~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 94 (884)
...++.|+++++.+....|..++++++|++|++++|.++...+..|+++++|++|++++|++++..|..+.++++|++|+
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEE
T ss_conf 87675887889964856977874066768888999856756854530388889898989966853966741567888898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC--CCCCCCEEEECCCCCCCCC-CCCCCC-------------
Q ss_conf 657665587882334622344111223324899993457--9888758882043012323-432445-------------
Q 002760 95 ADSNNLVGEIPADIGSLFKLERLSIFQNHITGQLPASIG--NLSSLRVIDVRENRLWGRI-DSLGQL------------- 158 (884)
Q Consensus 95 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~-~~~~~l------------- 158 (884)
+++|.+.+..+..+..+++|++|++++|.++...+..+. .+++|++|++++|.+..++ ..+..+
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred CCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 98995246672111245567779745884365297886244666321798889825655815553223445543056646
Q ss_pred --------------CCCCEEECCCCCCCCCCCCCCCCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf --------------44354642123367889954457886--11998104532356898889888777557357872223
Q 002760 159 --------------KSLTLLSVAFNQFSGMIPPSIFNISS--LEVISLSENRFTGSLPVDTGVNLPSLRELRTNANNFTG 222 (884)
Q Consensus 159 --------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~L~~n~l~~ 222 (884)
++|+.|++++|.+.+..+..+..++. |+.|++++|.+. .++...+..+++|+.|++++|.+..
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSE
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 805677787775315100887457743646866751467677888778788767-5680211674105685577885676
Q ss_pred CCCCCCCCCCCCCEECCCCCCCC---------CCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEC
Q ss_conf 27734625777650023446344---------576544465554323305323469999970346653127889949984
Q 002760 223 FIPVSLSNASSLEMIEFSKNQFS---------GGVSVDFSRLKNLYWLNLGINNLGTGAANELDFINLLTNCSKLERLYF 293 (884)
Q Consensus 223 ~~~~~l~~l~~L~~L~L~~N~l~---------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L 293 (884)
..+..+..+++|+.|++++|... .+....|..+++|+.|++++|.+..... ..+..+++|+.|++
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS------NMFTGLINLKYLSL 360 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT------TTTTTCTTCCEEEC
T ss_pred CCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCH------HHHCCCCCCCEEEC
T ss_conf 586562678885577363313213333355454386562467778888798982687885------57406568728988
Q ss_pred CCCCCCCC-CC-CHHHCCC-HHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCEEECCCC
Q ss_conf 68855678-89-2011000-104311026883211379222687887499932488886689-23379999999986488
Q 002760 294 NRNRFEGE-LP-HSVANLS-STIKQIAMGRNRISGTIPPEIRNLASLNWLTIDTNQLTGTIP-PEIGELTNLQQLDLDRN 369 (884)
Q Consensus 294 ~~N~l~~~-~~-~~~~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n 369 (884)
++|.+... ++ ..+.... ..++.+++++|.+++..+..|..+++|+.|++++|.+.+..+ ..|..+++|+.|++++|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 79801443235322024556867668899997776775442077888888677875754357553257546127844899
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCC
Q ss_conf 799988876676565768973265154--227989868654332113463123765332232110001120377447989
Q 002760 370 FLQGSIPSSLGNLTLLTYLKLGLNNLE--GNIPSSLGNCTNLLGLNISHNKLIGTLPRQILRITTLSLYLELGNNLLNGS 447 (884)
Q Consensus 370 ~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~l~~n~l~~~ 447 (884)
++.+..+..|..+++|+.|++++|.+. +..|..|..+++|+.|++++|++.+..+..+.. ...+.+|++++|.+.+.
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG-LEKLEILDLQHNNLARL 519 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCGGG
T ss_pred CCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCC-CCCCCEEECCCCCCCCC
T ss_conf 75422764550075431011014644225667764555787899989999877679446345-53468885889973000
Q ss_pred CC--------CCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 99--------6644777667796379979888603321143554122337587612581035866656330357620366
Q 002760 448 LP--------PEVGNLKNLMRLDLSGNKFSGEIPATLSACANLEYLNISGNAFSGSIPLLLDSLQSIKELDFSSNNLNGQ 519 (884)
Q Consensus 448 ~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 519 (884)
.+ ..|.++++|+.|+|++|+++.+.+..|.++++|+.|++++|+++.+.+..|..+++|+.|++++|++++.
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred CHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 00004677414233799888888999978877977734666752238999977767976837898888898999968705
Q ss_pred CCCCCC-CCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCC--CC--CCCCCCCCCCCC
Q ss_conf 652353-778666153268617101599-98656665441--02--797435898767
Q 002760 520 IPEYLE-NLSFLEFLNLSYNHFEGEVPM-KGVFNNKTRFS--IA--GNGKLCGGLDEL 571 (884)
Q Consensus 520 ~p~~~~-~l~~L~~l~l~~N~l~~~~~~-~~~~~~~~~~~--~~--~n~~~c~~~~~~ 571 (884)
.+..+. .+++|+.+++++|||.|+|+. .|...++.... +. .....|..|..+
T Consensus 600 ~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~ 657 (680)
T 1ziw_A 600 EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHY 657 (680)
T ss_dssp CHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-------------------
T ss_pred CHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCHHH
T ss_conf 9668301146657798318970257766899999987367643466678577975598
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=467.91 Aligned_cols=529 Identities=19% Similarity=0.180 Sum_probs=368.0
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 99928999732258676688889688824786787899686899998899744886768578344499998577465766
Q 002760 20 RLDLGNQSIRGTLSPYVGNLSFLRYINIASNGFNGEIPHQIGRLISLERLILSNNSFSGAIPANLSSCSNLIELSADSNN 99 (884)
Q Consensus 20 ~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 99 (884)
.++.++++++ .+|..+. ..+++|++++|.++...+..|.++++|++|++++|++++..|..|.++++|++|++++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEECCCCCCC-CCCCCCC--CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCC
T ss_conf 0574688845-1898888--876788788897577375455577667488688773664397773060106886787985
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 558788233462234411122332489999345798887588820430123--234324454435464212336788995
Q 002760 100 LVGEIPADIGSLFKLERLSIFQNHITGQLPASIGNLSSLRVIDVRENRLWG--RIDSLGQLKSLTLLSVAFNQFSGMIPP 177 (884)
Q Consensus 100 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~ 177 (884)
+....|..|..+++|++|++++|.++...+..++.+++|++|++++|.+.. +|..++++++|++|++++|.++...+.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHH
T ss_conf 63048522078653788870377555445113489887798968788523253068673267777887668853105733
Q ss_pred CCCCCCCCC----EEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCEECC-------------
Q ss_conf 445788611----99810453235689888988877755735787222-327734625777650023-------------
Q 002760 178 SIFNISSLE----VISLSENRFTGSLPVDTGVNLPSLRELRTNANNFT-GFIPVSLSNASSLEMIEF------------- 239 (884)
Q Consensus 178 ~l~~l~~L~----~L~L~~n~i~~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L------------- 239 (884)
.+..+.+|+ .|++++|.+. .++...+... +|+.|++++|.+. ...+..+..++.++.+++
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred HHHHHHCCCCCCCEEECCCCCCC-EECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 41212034200243004689753-2571105676-043352467856166778886026656523141111036774102
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCC
Q ss_conf --------------------446344576544465554323305323469999970346653127889949984688556
Q 002760 240 --------------------SKNQFSGGVSVDFSRLKNLYWLNLGINNLGTGAANELDFINLLTNCSKLERLYFNRNRFE 299 (884)
Q Consensus 240 --------------------~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~ 299 (884)
..|.+.+..+. +..+++|+.|++++|.+...+ .+..+++|+.|++++|.+
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~L~l~~n~l- 319 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQSLSIIRCQL- 319 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSEEEEESCCC-
T ss_pred CCHHHHHHHHHCCHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHHHH--------HCCCCCCCCEEECCCCCC-
T ss_conf 6817766665434745012366555543222-354887898771476604435--------433401177897646667-
Q ss_pred CCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 788920110001043110268832113792226878874999324888866--892337999999998648879998887
Q 002760 300 GELPHSVANLSSTIKQIAMGRNRISGTIPPEIRNLASLNWLTIDTNQLTGT--IPPEIGELTNLQQLDLDRNFLQGSIPS 377 (884)
Q Consensus 300 ~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 377 (884)
+.+|. + ..+.++.|++++|...... .+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+. ..+.
T Consensus 320 ~~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~ 393 (606)
T 3vq2_A 320 KQFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSA 393 (606)
T ss_dssp SSCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECC
T ss_pred CCCCC-C--CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCC-CCHH
T ss_conf 65466-7--8875564454478685310--002489888797758736877520122146775548678899530-0055
Q ss_pred CCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCC-CCCCCCCCC
Q ss_conf 66765657689732651542279-8986865433211346312376533223211000112037744798-999664477
Q 002760 378 SLGNLTLLTYLKLGLNNLEGNIP-SSLGNCTNLLGLNISHNKLIGTLPRQILRITTLSLYLELGNNLLNG-SLPPEVGNL 455 (884)
Q Consensus 378 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~l~~n~l~~-~~~~~~~~l 455 (884)
.+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|++.+..|..+..... ++.|++++|.+.+ ..|..|..+
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-LNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTC
T ss_pred HCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCC-CCEEECCCCCCCCCCHHHHHCCC
T ss_conf 40688888965898870587537645646213788989689787433555347787-89898989837985467760457
Q ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEE
Q ss_conf 7667796379979888603321143554122337587612581035866656330357620366652353778-666153
Q 002760 456 KNLMRLDLSGNKFSGEIPATLSACANLEYLNISGNAFSGSIPLLLDSLQSIKELDFSSNNLNGQIPEYLENLS-FLEFLN 534 (884)
Q Consensus 456 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~l~ 534 (884)
++|+.|++++|++++..|..|..+++|+.|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.++
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFN 551 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEE
T ss_conf 88998989888577648656154646898989899578748777068876898889898376-66876752102174887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCC
Q ss_conf 26861710159998656665441---02797435898767
Q 002760 535 LSYNHFEGEVPMKGVFNNKTRFS---IAGNGKLCGGLDEL 571 (884)
Q Consensus 535 l~~N~l~~~~~~~~~~~~~~~~~---~~~n~~~c~~~~~~ 571 (884)
+++|++.|.|+..+...++.... .......|..|..+
T Consensus 552 l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 591 (606)
T 3vq2_A 552 LTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEM 591 (606)
T ss_dssp CCSCCCCCSSTTHHHHTTTTTSSSSBSSGGGCCCC-----
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCHHH
T ss_conf 6289866477648999998727640047766165977576
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=453.05 Aligned_cols=511 Identities=23% Similarity=0.255 Sum_probs=268.4
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 88824786787899686899998899744886768578344499998577465766558788233462234411122332
Q 002760 44 YINIASNGFNGEIPHQIGRLISLERLILSNNSFSGAIPANLSSCSNLIELSADSNNLVGEIPADIGSLFKLERLSIFQNH 123 (884)
Q Consensus 44 ~L~l~~~~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 123 (884)
.++.++..++ .+|..+.. .+++|++++|.+++..|..|.++++|++|++++|++....|..|..+++|++|++++|.
T Consensus 16 ~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCCC-CCCCCCCC--CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC
T ss_conf 3777779806-28677898--67589815873471796672567665289788983552485113684336764488985
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 4899993457988875888204301232-343244544354642123367889954457886119981045323568988
Q 002760 124 ITGQLPASIGNLSSLRVIDVRENRLWGR-IDSLGQLKSLTLLSVAFNQFSGMIPPSIFNISSLEVISLSENRFTGSLPVD 202 (884)
Q Consensus 124 l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~l~~~ 202 (884)
++...|..|+.+++|++|++++|.+..+ +..+..+++|++|++++|++.......+..+++|+.|++++|.+. .++..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~ 171 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKE 171 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHH
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHH
T ss_conf 65458655234421537652126766578101223782238988798341147654568765687776568445-54965
Q ss_pred CCCCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC--------------------------CCCCCCCCCC
Q ss_conf 898887775--573578722232773462577765002344634--------------------------4576544465
Q 002760 203 TGVNLPSLR--ELRTNANNFTGFIPVSLSNASSLEMIEFSKNQF--------------------------SGGVSVDFSR 254 (884)
Q Consensus 203 ~~~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l--------------------------~~~~~~~~~~ 254 (884)
.+..+++|+ .|++++|.+....+..+.. .+|+.|++++|.. ..+....|..
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCH
T ss_conf 633221564038966798147548667300-1001355677266777765133564422002011026412268667430
Q ss_pred CC--CCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 55--4323305323469999970346653127889949984688556788920110001043110268832113792226
Q 002760 255 LK--NLYWLNLGINNLGTGAANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIPPEIR 332 (884)
Q Consensus 255 l~--~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~ 332 (884)
+. +++.+++++|.+..... ..+..+++|+.|++++|.+. .+|..+..+ +.+++|++++|.+....+..+.
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l-~~L~~L~l~~n~l~~~~~~~~~ 322 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISS------NTFHCFSGLQELDLTATHLS-ELPSGLVGL-STLKKLVLSANKFENLCQISAS 322 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCT------TTTTTCTTCSEEECTTSCCS-CCCSSCCSC-TTCCEEECTTCCCSBGGGGCGG
T ss_pred HHCCCEEEEEEECCCCCCCCH------HHHCCCCCCCEEECCCCCCC-CCCHHHCCC-CCCCEEECCCCCCCCCCHHHHH
T ss_conf 320750599944576585577------77445667888956288267-778214165-4688897716876867602330
Q ss_pred CCCCCCEEEEECCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 87887499932488886689-23379999999986488799988--8766765657689732651542279898686543
Q 002760 333 NLASLNWLTIDTNQLTGTIP-PEIGELTNLQQLDLDRNFLQGSI--PSSLGNLTLLTYLKLGLNNLEGNIPSSLGNCTNL 409 (884)
Q Consensus 333 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 409 (884)
.+++|+.|++++|.+....+ ..+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+..|..+++|
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 15768988898997444346245506675898878899666456752210567888989898996775788873477457
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC---CHHHHHCCCCCCCCC
Q ss_conf 32113463123765332232110001120377447989996644777667796379979888---603321143554122
Q 002760 410 LGLNISHNKLIGTLPRQILRITTLSLYLELGNNLLNGSLPPEVGNLKNLMRLDLSGNKFSGE---IPATLSACANLEYLN 486 (884)
Q Consensus 410 ~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~ 486 (884)
+.|++++|++.+..|...+...+.+..|++++|.+.+..+..+..+++|+.|++++|++.+. .+..|..+++|+.|+
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred CEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEE
T ss_conf 76878888677756521241765588898989855776877873788788898989988854345431240488766887
Q ss_pred CCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 3375876125810358666563303576203666523537786661532686171015999-865666544102797435
Q 002760 487 ISGNAFSGSIPLLLDSLQSIKELDFSSNNLNGQIPEYLENLSFLEFLNLSYNHFEGEVPMK-GVFNNKTRFSIAGNGKLC 565 (884)
Q Consensus 487 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~-~~~~~~~~~~~~~n~~~c 565 (884)
+++|++.+..|..|..+++|+.|++++|++++..|..+..++.| .|++++|++++.+|.. ..+..+..+.+.+|++.|
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC
T ss_conf 99996670686463265678889898980686896684756651-89876894142687662567787889677998616
Q ss_pred CCC
Q ss_conf 898
Q 002760 566 GGL 568 (884)
Q Consensus 566 ~~~ 568 (884)
+|+
T Consensus 562 ~c~ 564 (606)
T 3t6q_A 562 TCS 564 (606)
T ss_dssp SGG
T ss_pred CCC
T ss_conf 677
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=450.23 Aligned_cols=525 Identities=19% Similarity=0.180 Sum_probs=440.3
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCC
Q ss_conf 99992899973225867668888968882478678789968689999889974488676857-83444999985774657
Q 002760 19 TRLDLGNQSIRGTLSPYVGNLSFLRYINIASNGFNGEIPHQIGRLISLERLILSNNSFSGAI-PANLSSCSNLIELSADS 97 (884)
Q Consensus 19 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~ 97 (884)
...|.++++++ .+|. -.+++++|+|++|.++...|.+|.++++|++|+|++|...+.+ |..|.++++|++|+|++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEECCCCCCC-CCCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 48982379977-7898---9998688888778678329667766213708867899774441977853787788887989
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCC--CCCCCCCCCCEEECCCCCCCC
Q ss_conf 6655878823346223441112233248999934--579888758882043012323--432445443546421233678
Q 002760 98 NNLVGEIPADIGSLFKLERLSIFQNHITGQLPAS--IGNLSSLRVIDVRENRLWGRI--DSLGQLKSLTLLSVAFNQFSG 173 (884)
Q Consensus 98 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~ 173 (884)
|.+....|..|..+++|++|+|++|.+++..+.. ++.+++|++|++++|.+...+ ..++++++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCE
T ss_conf 95853197671578665870176788973404676455667999888987864232566557638898989898984776
Q ss_pred CCCCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCC------CCCEEECCCCCCCCCCCCCCCCC---CCCCEECCC--
Q ss_conf 899544578--86119981045323568988898887------77557357872223277346257---776500234--
Q 002760 174 MIPPSIFNI--SSLEVISLSENRFTGSLPVDTGVNLP------SLRELRTNANNFTGFIPVSLSNA---SSLEMIEFS-- 240 (884)
Q Consensus 174 ~~~~~l~~l--~~L~~L~L~~n~i~~~l~~~~~~~l~------~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~-- 240 (884)
..+..+..+ ++|+.|+++.|.+.+..+.... .++ .|+.|++++|.+....+..+... .++..+.++
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred ECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHH-HCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCC
T ss_conf 678875355677503578978866655455332-2377223574007965788686567788876427441001121212
Q ss_pred -------CCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHCCCH
Q ss_conf -------463445765444655--54323305323469999970346653127889949984688556788920110001
Q 002760 241 -------KNQFSGGVSVDFSRL--KNLYWLNLGINNLGTGAANELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSS 311 (884)
Q Consensus 241 -------~N~l~~~~~~~~~~l--~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 311 (884)
.+.+.......|.++ ++|+.|++++|.+..... ..+..+++|+.|++++|.+.+..+..+..++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~- 314 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS------RVFETLKDLKVLNLAYNKINKIADEAFYGLD- 314 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS------CCSSSCCCCCEEEEESCCCCEECTTTTTTCS-
T ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCH------HHHHCCCCCCEEECCCCCCCCCCHHHHCCCC-
T ss_conf 234664445668898556525554786189897994551586------3452589999998979818987968836888-
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 04311026883211379222687887499932488886689233799999999864887999888766765657689732
Q 002760 312 TIKQIAMGRNRISGTIPPEIRNLASLNWLTIDTNQLTGTIPPEIGELTNLQQLDLDRNFLQGSIPSSLGNLTLLTYLKLG 391 (884)
Q Consensus 312 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 391 (884)
.|+.|++++|.++...+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+++. + .+++|+.|+++
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~ 389 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLS 389 (844)
T ss_dssp SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEE
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-C----CCCCCCHHCCC
T ss_conf 999898989978851878846899999898989987762866613788899988989977861-6----88982320058
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCC-CCCCCCCCCEEECCCCCCC-
Q ss_conf 65154227989868654332113463123765332232110001120377447989996-6447776677963799798-
Q 002760 392 LNNLEGNIPSSLGNCTNLLGLNISHNKLIGTLPRQILRITTLSLYLELGNNLLNGSLPP-EVGNLKNLMRLDLSGNKFS- 469 (884)
Q Consensus 392 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~- 469 (884)
+|.++ ..|.. ..+++.|++++|++.+.....+....+.+..|++++|.+.+..+. .+..+++|+.|++++|.++
T Consensus 390 ~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 390 GNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465 (844)
T ss_dssp SCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSS
T ss_pred CCCCC-CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99723-14554---554312214567534575566651277666666778712555543335668731002477773644
Q ss_pred ----CCCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf ----8860332114355412233758761258103586665633035762036665235377866615326861710159
Q 002760 470 ----GEIPATLSACANLEYLNISGNAFSGSIPLLLDSLQSIKELDFSSNNLNGQIPEYLENLSFLEFLNLSYNHFEGEVP 545 (884)
Q Consensus 470 ----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~ 545 (884)
+..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+. ++|+.|++++|.+++.+|
T Consensus 466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCH
T ss_conf 101355355544755365777889856553955704501221569999978745710110--045588898884788896
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99865666544102797435898
Q 002760 546 MKGVFNNKTRFSIAGNGKLCGGL 568 (884)
Q Consensus 546 ~~~~~~~~~~~~~~~n~~~c~~~ 568 (884)
. .+..+..+.+.+|++.|+|+
T Consensus 544 ~--~~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 544 D--VFVSLSVLDITHNKFICECE 564 (844)
T ss_dssp C--CCSSCCEEEEEEECCCCSSS
T ss_pred H--HHCCCCEEEECCCCCCCCCC
T ss_conf 6--83776889931997025366
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=438.95 Aligned_cols=513 Identities=20% Similarity=0.183 Sum_probs=368.4
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 96888247867878996868999988997448867685783444999985774657665587882334622344111223
Q 002760 42 LRYINIASNGFNGEIPHQIGRLISLERLILSNNSFSGAIPANLSSCSNLIELSADSNNLVGEIPADIGSLFKLERLSIFQ 121 (884)
Q Consensus 42 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 121 (884)
...++.++++++ .+|..+. .++++|++++|++++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCEECCCCCCC-CCCCCCC--CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCC
T ss_conf 970574688845-1898888--8767887888975773754555776674886887736643977730601068867879
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCC-CCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 3248999934579888758882043012323-432445443546421233678-89954457886119981045323568
Q 002760 122 NHITGQLPASIGNLSSLRVIDVRENRLWGRI-DSLGQLKSLTLLSVAFNQFSG-MIPPSIFNISSLEVISLSENRFTGSL 199 (884)
Q Consensus 122 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~l 199 (884)
|.++...|..|+++++|++|++++|.+..++ ..++.+++|++|++++|.+.. .+|..+.++++|+.|++++|++. .+
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~-~~ 168 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TI 168 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC-EE
T ss_pred CCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCE-EC
T ss_conf 85630485220786537888703775554451134898877989687885232530686732677778876688531-05
Q ss_pred CCCCCCCCCCCC----EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCC-
Q ss_conf 988898887775----5735787222327734625777650023446344-5765444655543233053234699999-
Q 002760 200 PVDTGVNLPSLR----ELRTNANNFTGFIPVSLSNASSLEMIEFSKNQFS-GGVSVDFSRLKNLYWLNLGINNLGTGAA- 273 (884)
Q Consensus 200 ~~~~~~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~- 273 (884)
+...+..+.+|+ .+++++|.+..+.+..+... +|+.|++++|.+. ...+..+..++.++.+++..+.+.....
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred CHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 733412120342002430046897532571105676-0433524678561667788860266565231411110367741
Q ss_pred -------------------------CHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCC
Q ss_conf -------------------------7034665312788994998468855678892011000104311026883211379
Q 002760 274 -------------------------NELDFINLLTNCSKLERLYFNRNRFEGELPHSVANLSSTIKQIAMGRNRISGTIP 328 (884)
Q Consensus 274 -------------------------~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~ 328 (884)
........+..+++|+.|++++|.+. .+| .+.. ...++.|++++|.+. .+|
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~-~~~L~~L~l~~n~l~-~lp 323 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPK-HFKWQSLSIIRCQLK-QFP 323 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCT-TCCCSEEEEESCCCS-SCC
T ss_pred CCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCH-HHH-HCCC-CCCCCEEECCCCCCC-CCC
T ss_conf 026817766665434745012366555543222354887898771476604-435-4334-011778976466676-546
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 2226878874999324888866892337999999998648879998--88766765657689732651542279898686
Q 002760 329 PEIRNLASLNWLTIDTNQLTGTIPPEIGELTNLQQLDLDRNFLQGS--IPSSLGNLTLLTYLKLGLNNLEGNIPSSLGNC 406 (884)
Q Consensus 329 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 406 (884)
.+ .+++|+.|++++|...... .+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+++ .+..+..+
T Consensus 324 -~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l 398 (606)
T 3vq2_A 324 -TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGL 398 (606)
T ss_dssp -CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTC
T ss_pred -CC-CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCC
T ss_conf -67-8875564454478685310--0024898887977587368775201221467755486788995300-05540688
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCHHHHHCCCCCCCC
Q ss_conf 5433211346312376533223211000112037744798999664477766779637997988-860332114355412
Q 002760 407 TNLLGLNISHNKLIGTLPRQILRITTLSLYLELGNNLLNGSLPPEVGNLKNLMRLDLSGNKFSG-EIPATLSACANLEYL 485 (884)
Q Consensus 407 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L 485 (884)
++|+.|++++|++.+..|...+...+.++.|++++|.+.+..|..+..+++|+.|++++|++.+ ..|..|..+++|+.|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEE
T ss_conf 88896589887058753764564621378898968978743355534778789898989837985467760457889989
Q ss_pred CCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 233758761258103586665633035762036665235377866615326861710159998656-6654410279743
Q 002760 486 NISGNAFSGSIPLLLDSLQSIKELDFSSNNLNGQIPEYLENLSFLEFLNLSYNHFEGEVPMKGVFN-NKTRFSIAGNGKL 564 (884)
Q Consensus 486 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~-~~~~~~~~~n~~~ 564 (884)
++++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++..++....++ .+..+.+.+|++.
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred ECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCC
T ss_conf 89888577648656154646898989899578748777068876898889898376668767521021748876289866
Q ss_pred CCCC
Q ss_conf 5898
Q 002760 565 CGGL 568 (884)
Q Consensus 565 c~~~ 568 (884)
|+++
T Consensus 559 c~c~ 562 (606)
T 3vq2_A 559 CICE 562 (606)
T ss_dssp CSST
T ss_pred CCCC
T ss_conf 4776
Done!