BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002761
(883 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255562037|ref|XP_002522027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538831|gb|EEF40431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 889
Score = 1365 bits (3533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 699/902 (77%), Positives = 779/902 (86%), Gaps = 37/902 (4%)
Query: 3 LFLRTPF--PFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQ----QKHGDSLLST 56
+FL +P P P S GVV ++ EKK+RRKKQ +Q +K+ +S+L
Sbjct: 1 MFLLSPPAPPLFKPHSFPSINGVV----CSTTVEKKSRRKKQPHQQKQQLEKNDNSILP- 55
Query: 57 NGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTL 116
+V++AAE+ LR FMEELM ARNRDA V+DVIYDM+AAGLSPGPRSFHGL+VAY L
Sbjct: 56 --AVITAAEKTLRFNFMEELMDRARNRDAVGVSDVIYDMVAAGLSPGPRSFHGLIVAYCL 113
Query: 117 NGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAW 176
NGD EGAM SL+RELS G+RPLHET +AL RLFGSKG A++GLEILAAMEK+ YDIR AW
Sbjct: 114 NGDIEGAMQSLRRELSQGIRPLHETFLALIRLFGSKGHASRGLEILAAMEKLKYDIRLAW 173
Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
++LVEELV+NKY+EDANKVFL+GAKGGLRATDE+YD MI EDCK GDHSNALEIAYEMEA
Sbjct: 174 IVLVEELVKNKYMEDANKVFLKGAKGGLRATDELYDYMIEEDCKVGDHSNALEIAYEMEA 233
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG-EDYMKPDTETYNCVIQAYTRAES 295
AGRMATTFHFN LLS QATCGIPE+AFATFENMEYG E+YMKPDTETYN VIQAYTRAES
Sbjct: 234 AGRMATTFHFNCLLSVQATCGIPEIAFATFENMEYGGEEYMKPDTETYNWVIQAYTRAES 293
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
YDRVQDVAELLGMMVEDHKRLQPNV+TYALLVECFTKYC V EAIRHFRALQN+EGGTKV
Sbjct: 294 YDRVQDVAELLGMMVEDHKRLQPNVRTYALLVECFTKYCVVREAIRHFRALQNFEGGTKV 353
Query: 356 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
LH +GNFGDPLSLYLRALCREGRI+ELLEALEAM +DNQP+PPRAMILSRKYRTLVSSWI
Sbjct: 354 LHYDGNFGDPLSLYLRALCREGRIVELLEALEAMGRDNQPIPPRAMILSRKYRTLVSSWI 413
Query: 416 EPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQ 475
EPLQEEAELGYEIDY+ARY++EGGLTGERKRWVPRRGKTPLDPDA GFIYSNPMETSFKQ
Sbjct: 414 EPLQEEAELGYEIDYVARYVAEGGLTGERKRWVPRRGKTPLDPDAAGFIYSNPMETSFKQ 473
Query: 476 RCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKM 535
RC+ED K +HRKLLRTL NEG A LG+ SESDY+RV ERLKK+IKGP+Q+VLKPKAASKM
Sbjct: 474 RCIEDWKVHHRKLLRTLLNEGLAALGEASESDYLRVVERLKKIIKGPDQNVLKPKAASKM 533
Query: 536 VVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDEL 595
VVSELKEEL+AQGLP DGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEE+DE+
Sbjct: 534 VVSELKEELEAQGLPIDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDEI 593
Query: 596 ISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKDEEADE 655
ISRIKLEEGNTEFWKRRFLGEGLNG + + + + +SEL DVLDD V E+AD+
Sbjct: 594 ISRIKLEEGNTEFWKRRFLGEGLNGSNLQPMSVAKSELPDVLDD-------VDAIEDADK 646
Query: 656 -------------EEEVEQAEPESQDVDR-VKEKLVEAKKPLQMIGVQLLKDSDQTTTTS 701
E EVE + E+QDVDR VKEK VEAKKPLQMIGVQLLKDSD TT S
Sbjct: 647 EVEDEEADDEEEAEAEVEVEQTENQDVDRVVKEKEVEAKKPLQMIGVQLLKDSDHLTTRS 706
Query: 702 KRSMKRSSRM-VEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITN 760
K+S +RS+R VEDD D+DWFPEDPFEAFKE+R+RKVFDV DMYTIAD WGWTWEREI N
Sbjct: 707 KKSKRRSARASVEDDADDDWFPEDPFEAFKELRERKVFDVEDMYTIADVWGWTWEREIKN 766
Query: 761 RPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSL 820
RPPQKWSQEWEVELAI++MLK +L GTPTIGDCA+I+RAAIRAP+PSAFLKILQ THSL
Sbjct: 767 RPPQKWSQEWEVELAIKLMLKA-QLSGTPTIGDCAMILRAAIRAPMPSAFLKILQTTHSL 825
Query: 821 GYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGETSVDD 880
GY FGSPLYDE+ISLCLD+GELDAA+AIVAD+E+TGI VPDQTLDRVI++RQ + VD+
Sbjct: 826 GYTFGSPLYDEVISLCLDIGELDAAIAIVADLESTGITVPDQTLDRVISARQAADNPVDE 885
Query: 881 AS 882
S
Sbjct: 886 TS 887
>gi|359476532|ref|XP_002268094.2| PREDICTED: uncharacterized protein LOC100241547 [Vitis vinifera]
gi|296085161|emb|CBI28656.3| unnamed protein product [Vitis vinifera]
Length = 884
Score = 1352 bits (3498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 680/884 (76%), Positives = 775/884 (87%), Gaps = 7/884 (0%)
Query: 2 SLFLRTPFPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVV 61
SL PF SP + + + + SA+SSPEK+ RRKK+ +Q DS ++ + V
Sbjct: 3 SLLTYAHLPFKSPYPTNPRR-TLTLTSAISSPEKRPRRKKKT--KQPKEDSFVAV--TAV 57
Query: 62 SAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHE 121
SA E+ LRL FMEELM+ AR+ D V++V YDM+AAGLSPGPRSFHGL+V+ LNGD E
Sbjct: 58 SAGEKALRLTFMEELMERARSADTAGVSEVFYDMVAAGLSPGPRSFHGLIVSTVLNGDDE 117
Query: 122 GAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVE 181
GAM SL+RELSAG+RPLHET +AL RLFGSKG AT+GLEILAAMEK+N+DIR+AWL+LVE
Sbjct: 118 GAMQSLRRELSAGLRPLHETFVALIRLFGSKGYATRGLEILAAMEKLNFDIRKAWLVLVE 177
Query: 182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA 241
ELVR+ +LEDANKVFL+GAKGGLRAT+E+YDL+I EDCK GDHSNAL IAYEMEAAGRMA
Sbjct: 178 ELVRHNHLEDANKVFLKGAKGGLRATNELYDLLIEEDCKVGDHSNALTIAYEMEAAGRMA 237
Query: 242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
TT+HFN LLS QATCGIPE+AFATFENMEYGEDYMKPDTETYN VIQAYTRAESYDRVQD
Sbjct: 238 TTYHFNCLLSVQATCGIPEIAFATFENMEYGEDYMKPDTETYNWVIQAYTRAESYDRVQD 297
Query: 302 VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 361
VAELLGMMVEDHKRLQPNVKTYALLVEC TKYC V EAIRHFRAL+N+EGGTKVLH+EGN
Sbjct: 298 VAELLGMMVEDHKRLQPNVKTYALLVECLTKYCVVREAIRHFRALKNFEGGTKVLHDEGN 357
Query: 362 FGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEE 421
FGDPLSLYLRALCREGRI+ELL+ALEAMAKDNQP+PPRAMILSRKYRTLVSSWIEPLQEE
Sbjct: 358 FGDPLSLYLRALCREGRIVELLDALEAMAKDNQPIPPRAMILSRKYRTLVSSWIEPLQEE 417
Query: 422 AELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDG 481
AELGYEIDYIARYI+EGGLTG+RKRWVPRRGKTPLDPDA+GFIYSNPMETSFKQRCLED
Sbjct: 418 AELGYEIDYIARYIAEGGLTGDRKRWVPRRGKTPLDPDALGFIYSNPMETSFKQRCLEDW 477
Query: 482 KKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELK 541
K YHRKLL+TL+NEG A LG+VSESDY+RVEERL+K+IKGP+Q+ LKPKAASKM+VSELK
Sbjct: 478 KMYHRKLLKTLRNEGLAALGEVSESDYIRVEERLRKIIKGPDQNALKPKAASKMIVSELK 537
Query: 542 EELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKL 601
EEL+AQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEE+DELISRIKL
Sbjct: 538 EELEAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDELISRIKL 597
Query: 602 EEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDD-DVTDVEYVAKDEEADEEEEVE 660
+EGNTEFWKRRFLGE L K ++ + SEL DVLDD D+ + +++ +EEE E
Sbjct: 598 QEGNTEFWKRRFLGEDLTVGRGKPMDKENSELPDVLDDADIGEDTAKEVEDDEADEEEEE 657
Query: 661 QAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRM-VEDDDDED 719
ESQ DRVK+K VEA KPLQMIGVQLLKDSDQTT +++S ++ SR +ED DD+D
Sbjct: 658 VEPTESQVADRVKDKEVEAAKPLQMIGVQLLKDSDQTTPATRKSRRKLSRASMEDSDDDD 717
Query: 720 WFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIM 779
WFP D EAFKEMR+RK+FDVSDMYTIAD WGWTWE+E+ N+PP+ W+QEWEVELAI++M
Sbjct: 718 WFPLDIHEAFKEMRERKIFDVSDMYTIADVWGWTWEKELKNKPPRSWTQEWEVELAIKVM 777
Query: 780 LKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDL 839
LKVIELGGTPTIGDCA+I+RAAIRAPLPSAFLK+LQ TH LGYVFGSPLY+E+I LCLDL
Sbjct: 778 LKVIELGGTPTIGDCAMILRAAIRAPLPSAFLKVLQTTHKLGYVFGSPLYNEVIILCLDL 837
Query: 840 GELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGETSVDDASS 883
GELDAA+AIVADMET+GIAVPD+TLDRVI++RQ +T+ D +S
Sbjct: 838 GELDAAIAIVADMETSGIAVPDETLDRVISARQMIDTAATDDTS 881
>gi|334185070|ref|NP_187076.2| plastid transcriptionally active 3 [Arabidopsis thaliana]
gi|332640537|gb|AEE74058.1| plastid transcriptionally active 3 [Arabidopsis thaliana]
Length = 910
Score = 1297 bits (3357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/898 (74%), Positives = 760/898 (84%), Gaps = 29/898 (3%)
Query: 3 LFLRTPFPF--ISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQ--KHGDSLLSTNG 58
LFL PFP I P+ + G+ IR ++S+PEKK RR+++Q+R ++ DSL +G
Sbjct: 4 LFLNPPFPSNSIHPI-PRRAAGISSIRCSISAPEKKPRRRRKQKRGDGAENDDSLSFGSG 62
Query: 59 SVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG 118
VSA E+ LRL FM+ELM+ ARNRD V++VIYDMIAAGLSPGPRSFHGLVVA+ LNG
Sbjct: 63 EAVSALERSLRLTFMDELMERARNRDTSGVSEVIYDMIAAGLSPGPRSFHGLVVAHALNG 122
Query: 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI 178
D +GAMHSL++EL AG RPL ET+IAL RL GSKG AT+GLEILAAMEK+ YDIRQAWLI
Sbjct: 123 DEQGAMHSLRKELGAGQRPLPETMIALVRLSGSKGNATRGLEILAAMEKLKYDIRQAWLI 182
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LVEEL+R +LEDANKVFL+GA+GG+RATD++YDLMI EDCKAGDHSNAL+I+YEMEAAG
Sbjct: 183 LVEELMRINHLEDANKVFLKGARGGMRATDQLYDLMIEEDCKAGDHSNALDISYEMEAAG 242
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
RMATTFHFN LLS QATCGIPEVA+ATFENMEYGE +MKPDTETYN VIQAYTRAESYDR
Sbjct: 243 RMATTFHFNCLLSVQATCGIPEVAYATFENMEYGEVFMKPDTETYNWVIQAYTRAESYDR 302
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
VQDVAELLGMMVEDHKR+QPNVKTYALLVECFTKYC V EAIRHFRAL+N+EGGT +LHN
Sbjct: 303 VQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKEAIRHFRALKNFEGGTVILHN 362
Query: 359 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL 418
GNF DPLSLYLRALCREGRI+EL++AL+AM KDNQP+PPRAMI+SRKYRTLVSSWIEPL
Sbjct: 363 AGNFEDPLSLYLRALCREGRIVELIDALDAMRKDNQPIPPRAMIMSRKYRTLVSSWIEPL 422
Query: 419 QEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCL 478
QEEAELGYEIDY+ARYI EGGLTGERKRWVPRRGKTPLDPDA GFIYSNP+ETSFKQRCL
Sbjct: 423 QEEAELGYEIDYLARYIEEGGLTGERKRWVPRRGKTPLDPDASGFIYSNPIETSFKQRCL 482
Query: 479 EDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVS 538
ED K +HRKLLRTLQ+EG VLGD SESDY+RV ERL+ +IKGP ++LKPKAASKMVVS
Sbjct: 483 EDWKVHHRKLLRTLQSEGLPVLGDASESDYMRVVERLRNIIKGPALNLLKPKAASKMVVS 542
Query: 539 ELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISR 598
ELKEEL+AQGLP DGTRNVLYQRVQKARRIN+SRGRPLWVPP+EEEEEEVDEEVD+LI R
Sbjct: 543 ELKEELEAQGLPIDGTRNVLYQRVQKARRINKSRGRPLWVPPIEEEEEEVDEEVDDLICR 602
Query: 599 IKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAK--------- 649
IKL EG+TEFWKRRFLGEGL + +VE E+ S V + +E ++K
Sbjct: 603 IKLHEGDTEFWKRRFLGEGL---IETSVESKETTESVVTGESEKAIEDISKEADNEEDDD 659
Query: 650 ----------DEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTT 699
DE +EE V + E ++ D VK K +AKK LQMIGVQLLK+SD+
Sbjct: 660 EEEQEGDEDDDENEEEEVVVPETENRAEGEDLVKNKAADAKKHLQMIGVQLLKESDEANR 719
Query: 700 TSKRSMKRSSRM-VEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREI 758
T KR KR+SRM +EDD DEDWFPE+PFEAFKEMR+RKVFDV+DMYTIAD WGWTWE++
Sbjct: 720 TKKRG-KRASRMTLEDDADEDWFPEEPFEAFKEMRERKVFDVADMYTIADVWGWTWEKDF 778
Query: 759 TNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTH 818
N+ P+KWSQEWEVELAI +M KVIELGG PTIGDCAVI+RAA+RAP+PSAFLKILQ TH
Sbjct: 779 KNKTPRKWSQEWEVELAIVLMTKVIELGGIPTIGDCAVILRAALRAPMPSAFLKILQTTH 838
Query: 819 SLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGET 876
SLGY FGSPLYDEII+LCLDLGELDAA+AIVADMETTGI VPDQTLD+VI++RQ+ E+
Sbjct: 839 SLGYSFGSPLYDEIITLCLDLGELDAAIAIVADMETTGITVPDQTLDKVISARQSNES 896
>gi|356533668|ref|XP_003535382.1| PREDICTED: uncharacterized protein LOC100802355 [Glycine max]
Length = 887
Score = 1291 bits (3340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 668/875 (76%), Positives = 759/875 (86%), Gaps = 30/875 (3%)
Query: 9 FPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGL 68
FPF L++ V +R+A+S+P+K+ R+KKQ + + SA E GL
Sbjct: 17 FPF---KLNRFSPRAVTVRAAVSAPDKRGRKKKQSKDDE--------------SAVENGL 59
Query: 69 RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
R FMEELM ARNRD+ V++V+YDMIAAGLSPGPRSFHGLVV++ LNGD E AM SL+
Sbjct: 60 RFSFMEELMDRARNRDSNGVSEVMYDMIAAGLSPGPRSFHGLVVSHALNGDEEAAMESLR 119
Query: 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY 188
REL+AG+RP+HET +AL RLFGSKG AT+GLEILAAMEK+NYDIRQAWLIL+EELVRN +
Sbjct: 120 RELAAGLRPVHETFLALIRLFGSKGRATRGLEILAAMEKLNYDIRQAWLILIEELVRNMH 179
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
LEDAN+VFL+GAKGGL+ATDE+YDL+I EDCK GDHSNAL+IAYEMEAAGRMATTFHFN
Sbjct: 180 LEDANEVFLKGAKGGLKATDEVYDLLIQEDCKVGDHSNALDIAYEMEAAGRMATTFHFNC 239
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
LLS QATCGIPE+AFATFENMEYGEDYMKPDTETYN VIQAYTRAESYDRVQDVAELLGM
Sbjct: 240 LLSVQATCGIPEIAFATFENMEYGEDYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGM 299
Query: 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 368
MVEDHKR+QPN KT+ALLVECFTKYC V EAIRHFRAL+N+EGG +VLHNEGN GDPLSL
Sbjct: 300 MVEDHKRIQPNAKTHALLVECFTKYCVVREAIRHFRALKNFEGGIEVLHNEGNHGDPLSL 359
Query: 369 YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEI 428
YLRALCREGRI+E+LEALEAMAKDNQP+P RAMILSRKYRTLVSSWIEPLQEEAE+GYEI
Sbjct: 360 YLRALCREGRIVEMLEALEAMAKDNQPIPSRAMILSRKYRTLVSSWIEPLQEEAEIGYEI 419
Query: 429 DYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKL 488
DYI+RYI EGGLTGERKRWVPRRGKTPLDPDA GFIYSNPMETSFKQRC+E+ K +++KL
Sbjct: 420 DYISRYIDEGGLTGERKRWVPRRGKTPLDPDAHGFIYSNPMETSFKQRCMEELKLHNKKL 479
Query: 489 LRTLQNEGPAVLG-DVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQ 547
L+TLQNEG A LG DVSE DY+RV+ERLKKL+KGPEQ+VLKPKAASKM+VSELKEELDAQ
Sbjct: 480 LKTLQNEGLAALGDDVSEFDYIRVQERLKKLMKGPEQNVLKPKAASKMLVSELKEELDAQ 539
Query: 548 GLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTE 607
GLP DGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEE+D LISRIKLEEGNTE
Sbjct: 540 GLPIDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDALISRIKLEEGNTE 599
Query: 608 FWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAK---------DEEADEEEE 658
FWKRRFLGEGLNG + + +S++ +VL DDV +E AK +EE E+ E
Sbjct: 600 FWKRRFLGEGLNGDQEMPTDAVQSDVPEVL-DDVDAIEDAAKEVEDDEADDEEEEAEQAE 658
Query: 659 VEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRM-VEDDDD 717
E E+QDV+R+KEK VEAK+PLQMIGVQLLKD DQ T TSK+ KRS R+ VEDDDD
Sbjct: 659 EEVEPAENQDVNRIKEKEVEAKRPLQMIGVQLLKDIDQPTATSKK-FKRSRRVQVEDDDD 717
Query: 718 EDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQ 777
+DW P + FEAFKEMRKRK+FDVSDMYT+ADAWGWTWERE+ N+PP++WSQE EVELAI+
Sbjct: 718 DDWLPLNLFEAFKEMRKRKIFDVSDMYTLADAWGWTWERELKNKPPRRWSQEREVELAIK 777
Query: 778 IMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCL 837
+M KVIELGG PTIGDCA+I+RAAIRAPLPSAFL ILQ TH+LG+ FGSPLYDE ISLC+
Sbjct: 778 VMHKVIELGGRPTIGDCAMILRAAIRAPLPSAFLTILQTTHALGFKFGSPLYDETISLCV 837
Query: 838 DLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQ 872
DLGELDAAVA+VAD+ETTGI+V D TLDRVI+++Q
Sbjct: 838 DLGELDAAVAVVADLETTGISVSDHTLDRVISAKQ 872
>gi|356574857|ref|XP_003555560.1| PREDICTED: uncharacterized protein LOC100807191 [Glycine max]
Length = 887
Score = 1290 bits (3337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 674/874 (77%), Positives = 755/874 (86%), Gaps = 28/874 (3%)
Query: 9 FPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGL 68
FPF L++ V +R+A+SSP+K+ R+KKQ + SA E GL
Sbjct: 17 FPF---KLNRFSPRTVTVRAAVSSPDKRGRKKKQAKDDD--------------SAVENGL 59
Query: 69 RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
R FMEELM ARNRD+ V++V+YDMIAAGLSPGPRSFHGLVV++ LNGD E AM SL+
Sbjct: 60 RFSFMEELMDRARNRDSNGVSEVMYDMIAAGLSPGPRSFHGLVVSHALNGDEEAAMESLR 119
Query: 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY 188
REL+AG+RP+HET +AL RLFGSKG AT+GLEILAAMEK+NYDIRQAWLIL+EELV NK+
Sbjct: 120 RELAAGLRPVHETFLALIRLFGSKGRATRGLEILAAMEKLNYDIRQAWLILIEELVWNKH 179
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
LEDAN+VFL+GAKGGL+ATDE+YDL+I EDCKAGDHSNAL+IAYEMEAAGRMATTFHFN
Sbjct: 180 LEDANEVFLKGAKGGLKATDEVYDLLIEEDCKAGDHSNALDIAYEMEAAGRMATTFHFNC 239
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
LLS QATCGIPE+AFATFENMEYGEDYMKPDTETYN VIQAYTRAESYDRVQDVAELLGM
Sbjct: 240 LLSVQATCGIPEIAFATFENMEYGEDYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGM 299
Query: 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 368
MVEDHKR+QPN KT+ALLVECFTKYC V EAIRHFRAL+N+EGG KVLHNEGN GDPLSL
Sbjct: 300 MVEDHKRIQPNAKTHALLVECFTKYCVVREAIRHFRALKNFEGGIKVLHNEGNHGDPLSL 359
Query: 369 YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEI 428
YLRALCREGRI+E+LEALEAMAKDNQP+P RAMILSRKYRTLVSSWIEPLQEEAELGYEI
Sbjct: 360 YLRALCREGRIVEMLEALEAMAKDNQPIPSRAMILSRKYRTLVSSWIEPLQEEAELGYEI 419
Query: 429 DYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKL 488
DYI+RYI EGGLTGERKRWVPRRGKTPLDPDA GFIYSNPMETSFKQRCLE+ K +++KL
Sbjct: 420 DYISRYIDEGGLTGERKRWVPRRGKTPLDPDAHGFIYSNPMETSFKQRCLEELKLHNKKL 479
Query: 489 LRTLQNEGPAVLGD-VSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQ 547
L+TLQNEG A LGD VSESDY+RV+ERLKKLIKGPEQ+VLKPKAASKM+VSELKEELDAQ
Sbjct: 480 LKTLQNEGLAALGDGVSESDYIRVQERLKKLIKGPEQNVLKPKAASKMLVSELKEELDAQ 539
Query: 548 GLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTE 607
GLP DG RNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEE+D LIS IKLEEGNTE
Sbjct: 540 GLPIDGNRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDALISHIKLEEGNTE 599
Query: 608 FWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAK---------DEEADEEEE 658
FWKRRFLGEGLNG + + ESE+ +VL DDV +E AK DEE E+ E
Sbjct: 600 FWKRRFLGEGLNGDQEMPTDAAESEVPEVL-DDVDAIEDAAKEVEDDEADDDEEEAEQAE 658
Query: 659 VEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDE 718
E E+QDV+R+KEK VEAK+PLQMIGVQLLKD DQ T TSK+ + VEDDDD+
Sbjct: 659 EEVEPAENQDVNRIKEKEVEAKRPLQMIGVQLLKDIDQPTATSKKFKRSRKVQVEDDDDD 718
Query: 719 DWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQI 778
DW P D FEAF+EMRKRK+FDVSDMYT+ADAWGWTWERE+ +PP++WSQEWEVELAI++
Sbjct: 719 DWLPLDLFEAFEEMRKRKIFDVSDMYTLADAWGWTWERELKKKPPRRWSQEWEVELAIKV 778
Query: 779 MLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLD 838
M KVIELGG PTIGDCA+I+RAAIRAPLPSAFL ILQ THSLG+ FGSPLYDEIISLC+D
Sbjct: 779 MQKVIELGGRPTIGDCAMILRAAIRAPLPSAFLTILQTTHSLGFKFGSPLYDEIISLCVD 838
Query: 839 LGELDAAVAIVADMETTGIAVPDQTLDRVITSRQ 872
LGELDAAVA+VAD+ETTGI+V D TLDRVI+++Q
Sbjct: 839 LGELDAAVAVVADLETTGISVSDLTLDRVISAKQ 872
>gi|6721160|gb|AAF26788.1|AC016829_12 hypothetical protein [Arabidopsis thaliana]
Length = 913
Score = 1287 bits (3331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/901 (73%), Positives = 760/901 (84%), Gaps = 32/901 (3%)
Query: 3 LFLRTPFPF--ISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQ--KHGDSLLSTNG 58
LFL PFP I P+ + G+ IR ++S+PEKK RR+++Q+R ++ DSL +G
Sbjct: 4 LFLNPPFPSNSIHPI-PRRAAGISSIRCSISAPEKKPRRRRKQKRGDGAENDDSLSFGSG 62
Query: 59 SVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG 118
VSA E+ LRL FM+ELM+ ARNRD V++VIYDMIAAGLSPGPRSFHGLVVA+ LNG
Sbjct: 63 EAVSALERSLRLTFMDELMERARNRDTSGVSEVIYDMIAAGLSPGPRSFHGLVVAHALNG 122
Query: 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI 178
D +GAMHSL++EL AG RPL ET+IAL RL GSKG AT+GLEILAAMEK+ YDIRQAWLI
Sbjct: 123 DEQGAMHSLRKELGAGQRPLPETMIALVRLSGSKGNATRGLEILAAMEKLKYDIRQAWLI 182
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LVEEL+R +LEDANKVFL+GA+GG+RATD++YDLMI EDCKAGDHSNAL+I+YEMEAAG
Sbjct: 183 LVEELMRINHLEDANKVFLKGARGGMRATDQLYDLMIEEDCKAGDHSNALDISYEMEAAG 242
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED-YMKPDTETYNCVIQAYTRAESYD 297
RMATTFHFN LLS QATCGIPEVA+ATFENMEYGE +MKPDTETYN VIQAYTRAESYD
Sbjct: 243 RMATTFHFNCLLSVQATCGIPEVAYATFENMEYGEGLFMKPDTETYNWVIQAYTRAESYD 302
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
RVQDVAELLGMMVEDHKR+QPNVKTYALLVECFTKYC V EAIRHFRAL+N+EGGT +LH
Sbjct: 303 RVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKEAIRHFRALKNFEGGTVILH 362
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP 417
N GNF DPLSLYLRALCREGRI+EL++AL+AM KDNQP+PPRAMI+SRKYRTLVSSWIEP
Sbjct: 363 NAGNFEDPLSLYLRALCREGRIVELIDALDAMRKDNQPIPPRAMIMSRKYRTLVSSWIEP 422
Query: 418 LQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRC 477
LQEEAELGYEIDY+ARYI EGGLTGERKRWVPRRGKTPLDPDA GFIYSNP+ETSFKQRC
Sbjct: 423 LQEEAELGYEIDYLARYIEEGGLTGERKRWVPRRGKTPLDPDASGFIYSNPIETSFKQRC 482
Query: 478 LEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVV 537
LED K +HRKLLRTLQ+EG VLGD SESDY+RV ERL+ +IKGP ++LKPKAASKMVV
Sbjct: 483 LEDWKVHHRKLLRTLQSEGLPVLGDASESDYMRVVERLRNIIKGPALNLLKPKAASKMVV 542
Query: 538 SELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELIS 597
SELKEEL+AQGLP DGTRNVLYQRVQKARRIN+SRGRPLWVPP+EEEEEEVDEEVD+LI
Sbjct: 543 SELKEELEAQGLPIDGTRNVLYQRVQKARRINKSRGRPLWVPPIEEEEEEVDEEVDDLIC 602
Query: 598 RIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAK-------- 649
RIKL EG+TEFWKRRFLGEGL + +VE E+ S V + +E ++K
Sbjct: 603 RIKLHEGDTEFWKRRFLGEGL---IETSVESKETTESVVTGESEKAIEDISKEADNEEDD 659
Query: 650 -----------DEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTT 698
DE +EE V + E ++ D VK K +AKK LQMIGVQLLK+SD+
Sbjct: 660 DEEEQEGDEDDDENEEEEVVVPETENRAEGEDLVKNKAADAKKHLQMIGVQLLKESDEAN 719
Query: 699 TTSKRSMKRSSRM-VEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWERE 757
T KR KR+SRM +EDD DEDWFPE+PFEAFKEMR+RKVFDV+DMYTIAD WGWTWE++
Sbjct: 720 RTKKRG-KRASRMTLEDDADEDWFPEEPFEAFKEMRERKVFDVADMYTIADVWGWTWEKD 778
Query: 758 ITNRPPQKWSQEWEVELAIQIMLK--VIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQ 815
N+ P+KWSQEWEVELAI +M K VIELGG PTIGDCAVI+RAA+RAP+PSAFLKILQ
Sbjct: 779 FKNKTPRKWSQEWEVELAIVLMTKAGVIELGGIPTIGDCAVILRAALRAPMPSAFLKILQ 838
Query: 816 KTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGE 875
THSLGY FGSPLYDEII+LCLDLGELDAA+AIVADMETTGI VPDQTLD+VI++RQ+ E
Sbjct: 839 TTHSLGYSFGSPLYDEIITLCLDLGELDAAIAIVADMETTGITVPDQTLDKVISARQSNE 898
Query: 876 T 876
+
Sbjct: 899 S 899
>gi|224144652|ref|XP_002325363.1| predicted protein [Populus trichocarpa]
gi|222862238|gb|EEE99744.1| predicted protein [Populus trichocarpa]
Length = 887
Score = 1287 bits (3331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 674/891 (75%), Positives = 764/891 (85%), Gaps = 17/891 (1%)
Query: 3 LFLRTPFPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVS 62
L L+TP PF S+ GVV ++ S+ K R+K+ +Q+ S LS VVS
Sbjct: 4 LSLQTPLPFKPRHSLPSKNGVV--YASTSATAPKKSRRKKPPKQKNDNGSPLSV---VVS 58
Query: 63 AAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEG 122
A E+ LR FMEELM ARNRD+ V+DVIYDMIAAGLSPGPRSFHGL+VA+TLNGDHEG
Sbjct: 59 AEEKNLRFAFMEELMHRARNRDSNGVSDVIYDMIAAGLSPGPRSFHGLIVAHTLNGDHEG 118
Query: 123 AMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEE 182
AM SL+RELSAG RPLHET IAL RLFGSKG T+GLE+LAAMEK+NYDIR+AW++LVEE
Sbjct: 119 AMQSLRRELSAGHRPLHETCIALIRLFGSKGFGTRGLELLAAMEKLNYDIRRAWILLVEE 178
Query: 183 LVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT 242
LV+ +++EDAN+VFL+GA GGLRATDE+YDLMI EDCK GDHSNAL+IAY ME AGRMAT
Sbjct: 179 LVKGRFMEDANRVFLKGANGGLRATDELYDLMIEEDCKVGDHSNALDIAYAMEEAGRMAT 238
Query: 243 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
TFHFN LLS QATCGIPE++FATFENMEYGEDYMKPDTE+YN VIQAYTRAESYDRVQDV
Sbjct: 239 TFHFNCLLSVQATCGIPEISFATFENMEYGEDYMKPDTESYNWVIQAYTRAESYDRVQDV 298
Query: 303 AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF 362
AELLGMMVEDHKR+QPNVKTYALLVECF+KYC V EAIRHFRAL+ +EGGTK LHNEG F
Sbjct: 299 AELLGMMVEDHKRIQPNVKTYALLVECFSKYCVVREAIRHFRALRKFEGGTKALHNEGKF 358
Query: 363 GDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEA 422
GDPLSLYLRALCREGRI++LLEALEAMA+DNQP+PPRAMILSRKYRTLVSSWIEPLQEEA
Sbjct: 359 GDPLSLYLRALCREGRIVDLLEALEAMAEDNQPIPPRAMILSRKYRTLVSSWIEPLQEEA 418
Query: 423 ELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGK 482
ELGYEIDY+ARY++EGGLTGERKRWVPRRGKTPLDPD GFIYSNPMETS KQRCLED K
Sbjct: 419 ELGYEIDYVARYVAEGGLTGERKRWVPRRGKTPLDPDCDGFIYSNPMETSLKQRCLEDWK 478
Query: 483 KYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKE 542
+HRKLL+ L+NEG A LGD SESDY+RVEERL+K+I+GP+++VLKPKAASKM+VSELK+
Sbjct: 479 AHHRKLLKMLRNEGLAALGDASESDYLRVEERLRKIIRGPDRNVLKPKAASKMIVSELKD 538
Query: 543 ELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLE 602
EL+AQGLP DGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRI+L
Sbjct: 539 ELEAQGLPIDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIQLH 598
Query: 603 EGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDV---------EYVAKDEEA 653
EG+TEFWKRRFLGEG NG H K V+M+ SEL D LD+D D E ++ +
Sbjct: 599 EGDTEFWKRRFLGEGFNGNHVKPVDMETSELPDELDEDEDDDDDDVEDVAKEVEDEEADE 658
Query: 654 DEEEEVEQAEPESQDVDR-VKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMV 712
+ E EVE + ESQD +R VK K EAKKPLQMIGVQLLKDSDQTT SK+S +R++R+
Sbjct: 659 EGEVEVEVEQTESQDAERIVKAKEAEAKKPLQMIGVQLLKDSDQTTRMSKKSRRRAARLA 718
Query: 713 EDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEV 772
+ DDD+DWFPED EAFKEMR RKVFDV DMY IADAWGWTWEREI RP Q+WSQEWEV
Sbjct: 719 D-DDDDDWFPEDILEAFKEMRNRKVFDVEDMYLIADAWGWTWEREIKKRPLQRWSQEWEV 777
Query: 773 ELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEI 832
ELAIQ+MLK +LGGTPTIGDCA+I+RAAIRAP+PSAFLKILQ THSLGY FGS LYDEI
Sbjct: 778 ELAIQLMLKA-KLGGTPTIGDCAMILRAAIRAPMPSAFLKILQTTHSLGYQFGSSLYDEI 836
Query: 833 ISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGETSVDDASS 883
ISLC+DLGELDAA+AIVAD+ET GIAVPDQTLDRVI+++Q E++ ++ S
Sbjct: 837 ISLCVDLGELDAAIAIVADLETAGIAVPDQTLDRVISAKQAPESAAEETLS 887
>gi|297833108|ref|XP_002884436.1| hypothetical protein ARALYDRAFT_477686 [Arabidopsis lyrata subsp.
lyrata]
gi|297330276|gb|EFH60695.1| hypothetical protein ARALYDRAFT_477686 [Arabidopsis lyrata subsp.
lyrata]
Length = 914
Score = 1286 bits (3328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/901 (73%), Positives = 756/901 (83%), Gaps = 31/901 (3%)
Query: 3 LFLRTPFPFIS-PVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQ-KHGDSLLS-TNGS 59
LFL PFP S + + G+ IR ++S+PEKK RR+++Q+R DS LS +G
Sbjct: 4 LFLNPPFPSNSIHTIPRRAAGLSSIRCSISAPEKKPRRRRKQKRGDGAENDSSLSFGSGD 63
Query: 60 VVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGD 119
VSA E+ LRL FM+ELM+ ARNRD V++VIYDMIAAGLSPGPRSFHGLVVA+ LNGD
Sbjct: 64 AVSALERSLRLTFMDELMERARNRDTSGVSEVIYDMIAAGLSPGPRSFHGLVVAHALNGD 123
Query: 120 HEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLIL 179
GAMHSL++EL AG RPL ET+IAL RL GSKG AT+GLEILAAMEK+NYDIRQAWLIL
Sbjct: 124 EHGAMHSLRKELGAGQRPLPETMIALVRLSGSKGNATRGLEILAAMEKLNYDIRQAWLIL 183
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR 239
VEEL+R +LEDANKVFL+GA+GG+RAT+ +YDLMI EDCKAGDHSNALEI+YEMEAAGR
Sbjct: 184 VEELMRINHLEDANKVFLKGARGGMRATNHLYDLMIEEDCKAGDHSNALEISYEMEAAGR 243
Query: 240 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGED-YMKPDTETYNCVIQAYTRAESYDR 298
MATTFHFN LLS QATCGIPEVA+ATFENMEYGE +MKPDTETYN VIQAYTRAESYDR
Sbjct: 244 MATTFHFNCLLSVQATCGIPEVAYATFENMEYGEGLFMKPDTETYNWVIQAYTRAESYDR 303
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
VQDVAELLGMMVEDHKR+QPNVKTYALLVECFTKYC V EAIRHFRAL+N+EGGT +LHN
Sbjct: 304 VQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKEAIRHFRALKNFEGGTTILHN 363
Query: 359 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL 418
G F DPLSLYLRALCREGRI+EL++AL+AM KD+QP+PPRAMI+SRKYRTLVSSWIEPL
Sbjct: 364 AGKFEDPLSLYLRALCREGRIVELIDALDAMRKDSQPIPPRAMIMSRKYRTLVSSWIEPL 423
Query: 419 QEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCL 478
QEEAELGYEIDY+ARYI EGGLTGERKRWVPRRGKTPLDPDA GFIYSNP+ETSFKQRCL
Sbjct: 424 QEEAELGYEIDYVARYIEEGGLTGERKRWVPRRGKTPLDPDASGFIYSNPIETSFKQRCL 483
Query: 479 EDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVS 538
ED K +HRKLLRTLQ+EG VLGD SESDY+RV ERL+ +IKGP Q++LKPKAASKMVVS
Sbjct: 484 EDWKIHHRKLLRTLQSEGLPVLGDASESDYMRVMERLRNIIKGPAQNLLKPKAASKMVVS 543
Query: 539 ELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISR 598
ELKEEL+AQGLP DGTRNVLYQRVQKARRIN+SRGRPLWVPP+EEEEEEVDEEVD+LI R
Sbjct: 544 ELKEELEAQGLPIDGTRNVLYQRVQKARRINKSRGRPLWVPPIEEEEEEVDEEVDDLICR 603
Query: 599 IKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAK--------- 649
IKL EG+TEFWKRRFLGEGL + +VE E+ S V + +E ++K
Sbjct: 604 IKLHEGDTEFWKRRFLGEGL---IETSVESKETTESVVTGESEKAIEDISKEADNDEDDD 660
Query: 650 -----------DEEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTT 698
+ E +EE V + E ++ + VK K +AKK LQMIGVQLLK+SD+
Sbjct: 661 EEEQEGDDDDDETEEEEEVVVAETENRAEGEELVKNKAADAKKHLQMIGVQLLKESDEAN 720
Query: 699 TTSKRSMKRSSRM-VEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWERE 757
T KR KR+SRM +EDD DEDWFPEDPFEAFKEMR+RKVFDVSDMYTIAD WGWTWE++
Sbjct: 721 RTKKRG-KRASRMTLEDDADEDWFPEDPFEAFKEMRERKVFDVSDMYTIADVWGWTWEKD 779
Query: 758 ITNRPPQKWSQEWEVELAIQIMLK--VIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQ 815
NR P+KWSQEWEVELAI +M K VIELGG PTIGDCAVI+RAA+RAP+PSAFLKILQ
Sbjct: 780 FKNRTPRKWSQEWEVELAIVLMTKARVIELGGIPTIGDCAVILRAALRAPMPSAFLKILQ 839
Query: 816 KTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGE 875
THSLGY FGSPLYDEII+LCLD+GELDAA+AIVADMETTGI VPDQTLD+VI++RQ+ E
Sbjct: 840 TTHSLGYSFGSPLYDEIITLCLDIGELDAAIAIVADMETTGITVPDQTLDKVISARQSNE 899
Query: 876 T 876
Sbjct: 900 N 900
>gi|357441259|ref|XP_003590907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479955|gb|AES61158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 2047
Score = 1276 bits (3302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 654/914 (71%), Positives = 741/914 (81%), Gaps = 73/914 (7%)
Query: 25 PIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRD 84
P+R+A+SSPEK+TR+KKQ K D+LL E LR FMEELM ARNRD
Sbjct: 25 PVRAALSSPEKRTRKKKQV----KDDDTLL----------ENSLRFSFMEELMNRARNRD 70
Query: 85 APRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA 144
+ V+ V+YDMIAAGLSPGPRSFHGLVV+Y LNG+ + AM SL+REL AG+RP+HET +A
Sbjct: 71 STGVSQVMYDMIAAGLSPGPRSFHGLVVSYALNGNEQAAMDSLRRELGAGLRPIHETFVA 130
Query: 145 LARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
L RLFGSKG +T+GLEIL AME +NYDIR AW+IL+EELVRNK+LEDANKVFL+GAKGGL
Sbjct: 131 LVRLFGSKGHSTRGLEILGAMENLNYDIRHAWIILIEELVRNKHLEDANKVFLKGAKGGL 190
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
RATDE+YDL+I EDCKAGDHSNALEI+YEMEAAGRMATTFHFN LLS QATCGIPE+AF
Sbjct: 191 RATDELYDLLIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFT 250
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
TFENMEYGEDYMKPDTETYN VIQAYTRA+SYDRVQDVAELLGMMVEDHKR+QPNVKT+A
Sbjct: 251 TFENMEYGEDYMKPDTETYNWVIQAYTRADSYDRVQDVAELLGMMVEDHKRVQPNVKTHA 310
Query: 325 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLE 384
LLVECFTKYC V EAIRHFRAL+N+EGGTK+LH +GN GDPLSLYLRALCREGRII++LE
Sbjct: 311 LLVECFTKYCVVREAIRHFRALKNFEGGTKILHMDGNHGDPLSLYLRALCREGRIIDMLE 370
Query: 385 ALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGER 444
ALEAMA DNQ +PPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARY+ EGGLTGER
Sbjct: 371 ALEAMANDNQQIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYVEEGGLTGER 430
Query: 445 KRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGD-V 503
KRWVPR GKTPLDPDA GFIYSNPMETSFKQRCLE+ K YH+KLL+ L+ EG LGD
Sbjct: 431 KRWVPRSGKTPLDPDADGFIYSNPMETSFKQRCLEEKKVYHKKLLKKLRYEGIVALGDGA 490
Query: 504 SESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQ 563
SESDYVRV E LKK+IKGPEQ+ LKPKAASKM+V+ELKEEL+AQGLP DGTRNVLYQRVQ
Sbjct: 491 SESDYVRVIEWLKKIIKGPEQNALKPKAASKMLVNELKEELEAQGLPIDGTRNVLYQRVQ 550
Query: 564 KARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHD 623
KARRIN+SRGRPLWVPP+E EEEEVDEE++ LISRIKLEEGNTE+WKRRFLGEGLNG +
Sbjct: 551 KARRINQSRGRPLWVPPIEVEEEEVDEELEALISRIKLEEGNTEYWKRRFLGEGLNGDNG 610
Query: 624 KAVEMDESELSDVLDDDVTDV-----------EYVAKDEEADEEEEVEQAEPESQDVDRV 672
A++ ESE DV D DV E +EE E+ E E A+ E+QDV+R+
Sbjct: 611 NAMDEGESESPDV--QDYIDVVGDDAKEAEDDEADEDEEEEVEQIEEEIAQVENQDVERI 668
Query: 673 KEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSS--RMVEDDDDEDWFPEDPFEAFK 730
KEK VE+KKPLQMIGVQLLKD ++ + T K+S +R S MV+DD D+DWFP D FEAFK
Sbjct: 669 KEKEVESKKPLQMIGVQLLKDFNEPSATFKKSSRRRSRRNMVDDDADDDWFPLDIFEAFK 728
Query: 731 EMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLK--------- 781
EMR R+VFDVSDMYT+ADAWGWTWE+E+ NRPP +WSQEWEV+LAI++M K
Sbjct: 729 EMRNRRVFDVSDMYTLADAWGWTWEKELKNRPPHRWSQEWEVDLAIKVMQKATVANTPLD 788
Query: 782 ----------------------------------VIELGGTPTIGDCAVIIRAAIRAPLP 807
VI+LGGTPTIGDCAVI+RAAI APLP
Sbjct: 789 KLNKKEIVRAVILSMCKELKVGYVVRIKYGDNAAVIQLGGTPTIGDCAVILRAAISAPLP 848
Query: 808 SAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRV 867
SAFL ILQ TH LGY FG PLYDE+ISLCLDLGELDAAVA+VAD+ETTGI V DQTLDRV
Sbjct: 849 SAFLTILQTTHGLGYKFGRPLYDEVISLCLDLGELDAAVAVVADLETTGILVSDQTLDRV 908
Query: 868 ITSRQTGETSVDDA 881
I+++Q + +D
Sbjct: 909 ISAKQGIDNPSNDG 922
>gi|357140590|ref|XP_003571848.1| PREDICTED: uncharacterized protein LOC100838913 [Brachypodium
distachyon]
Length = 885
Score = 1143 bits (2956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/826 (70%), Positives = 687/826 (83%), Gaps = 16/826 (1%)
Query: 59 SVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG 118
S A E+GLRL F+E+L++ AR DA V D IYDM+AAGLSPGPRSFHGLV A+ L+G
Sbjct: 61 SAAGAVEKGLRLAFLEQLVERARAADAAGVADTIYDMVAAGLSPGPRSFHGLVAAHALSG 120
Query: 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI 178
D EGAM SL+RELS+GVRPLHET +AL R+F KGL+T+ +EILAAME+ YDIR+AWLI
Sbjct: 121 DAEGAMQSLRRELSSGVRPLHETFVALVRVFAKKGLSTRAMEILAAMERYKYDIRKAWLI 180
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LVEELVRN YLEDAN VFL+GAKGGL+ TDE+YDL+I EDCKAGDHSNAL +AY+MEAAG
Sbjct: 181 LVEELVRNHYLEDANTVFLKGAKGGLQGTDELYDLLIEEDCKAGDHSNALTVAYQMEAAG 240
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYG-EDYMKPDTETYNCVIQAYTRAESYD 297
RMATTFHFN LLS QATCGIPE+AF+T+ENMEYG EDYMKPDTE+YN VIQA+TRA ++D
Sbjct: 241 RMATTFHFNCLLSVQATCGIPEIAFSTYENMEYGGEDYMKPDTESYNWVIQAFTRASAHD 300
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
R DVAELLGMMVED+KR+QPN +TYALLVECFTKYC V EAIRHFRAL+ GGT VL+
Sbjct: 301 RAPDVAELLGMMVEDYKRIQPNARTYALLVECFTKYCMVNEAIRHFRALRRIPGGTTVLY 360
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP 417
NEGN GDPLSLYLR+LC +GR ELL+ALEAMA DNQ + PRAMIL+RKYRTLVSSWIEP
Sbjct: 361 NEGNCGDPLSLYLRSLCLDGRADELLDALEAMADDNQTIAPRAMILNRKYRTLVSSWIEP 420
Query: 418 LQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRC 477
LQEEA++G+EIDY+ARYI EGGLTGERKRWVPRRGKTPLDPD GF YSNP+ETSFK RC
Sbjct: 421 LQEEADVGFEIDYVARYIEEGGLTGERKRWVPRRGKTPLDPDEFGFAYSNPIETSFKLRC 480
Query: 478 LEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVV 537
E+ K YHR+LL TL+NEGP +LGDVSE D RV ERLKKL+ GP+++V+KPKAASKMVV
Sbjct: 481 FEELKLYHRRLLITLRNEGPGILGDVSEDDVRRVVERLKKLVVGPKKNVVKPKAASKMVV 540
Query: 538 SELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELIS 597
SELK EL+AQGLPTDG R VLYQRVQKARRINRSRG PLWVPPVE++EE EE+DE+IS
Sbjct: 541 SELKIELEAQGLPTDGNRQVLYQRVQKARRINRSRGIPLWVPPVEDDEEVD-EELDEMIS 599
Query: 598 RIKLEEGNTEFWKRRFLGEGLNGR-HDKAVEMDESELSDVLDDDVTDVEYVAKDEEADE- 655
RIKLE+GNTEFWKRRFLGE N + + E D ++ DDD D + AK+ + DE
Sbjct: 600 RIKLEDGNTEFWKRRFLGETRNHLCEEDSKEEDPDLDDELDDDDDDDDDDSAKEADEDEI 659
Query: 656 --EEEVEQAEPESQDVDRVKEKLVEAKKP---LQMIGVQLLKDSDQTTTTSKRSMKRSSR 710
EE E+ + ++ D D K+K AK P LQMIGVQLLKD ++T+ ++K+ K
Sbjct: 660 YDEEVAERTQNQAGD-DETKDK--PAKGPNQHLQMIGVQLLKDLEKTSVSTKKLKK---- 712
Query: 711 MVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEW 770
+ E DDDEDWFPEDP EAFK MR+ ++FDVSDMYT ADAWGWTWEREI + P+KWSQEW
Sbjct: 713 IPEIDDDEDWFPEDPIEAFKVMRETRMFDVSDMYTTADAWGWTWEREIKKKMPRKWSQEW 772
Query: 771 EVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYD 830
EVELAI+IM KVI+LGGTPTIGDCA+I+RAA++AP+PS F+ ILQ TH+LG+ FGSPLYD
Sbjct: 773 EVELAIKIMNKVIQLGGTPTIGDCAIILRAAMKAPVPSTFMTILQTTHNLGHKFGSPLYD 832
Query: 831 EIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGET 876
E+I LCLDL E+DAA+A+VA+MET GI V D+TLDRV++++Q+G +
Sbjct: 833 EVILLCLDLEEIDAAIAVVAEMETNGIKVLDETLDRVLSAKQSGNS 878
>gi|22758327|gb|AAN05531.1| putative DNA binding domain containing protein [Oryza sativa
Japonica Group]
gi|31432536|gb|AAP54158.1| SAP domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 898
Score = 1124 bits (2907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/825 (71%), Positives = 681/825 (82%), Gaps = 11/825 (1%)
Query: 59 SVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG 118
+ A E+GLRL F+E+L + AR DA V D IYDM+AAGLSPGPRSFHGLV A+ L G
Sbjct: 70 AAAGAVEKGLRLAFLEQLAERARAADAAGVADAIYDMVAAGLSPGPRSFHGLVAAHVLAG 129
Query: 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI 178
D EGAM SL+RELS+GVRPLHET +AL R+F KGLAT+G+EILAAME+ YDIR+AWLI
Sbjct: 130 DAEGAMQSLRRELSSGVRPLHETFVALVRVFAKKGLATRGMEILAAMERYKYDIRKAWLI 189
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LVEELV N YLEDAN VFL+G +GGL+ TDEIYDL+I EDCKAGDHSNAL +AY+MEA+G
Sbjct: 190 LVEELVNNNYLEDANTVFLKGTEGGLQGTDEIYDLLIEEDCKAGDHSNALTVAYKMEASG 249
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYG-EDYMKPDTETYNCVIQAYTRAESYD 297
RMATTFHFN LLS QATCGIPE+AFATFENMEYG E YMKPDTE+YN VIQA+TRA SYD
Sbjct: 250 RMATTFHFNCLLSVQATCGIPEIAFATFENMEYGGEGYMKPDTESYNWVIQAFTRATSYD 309
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
R DVAELLGMMVEDHKR+QPN +TYALLVECFTKY V EAIRHFRAL+ GGTKVL+
Sbjct: 310 RAGDVAELLGMMVEDHKRIQPNARTYALLVECFTKYSMVNEAIRHFRALRRIPGGTKVLY 369
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP 417
NEGN GDPLSLYLR+LC +GR ELLEALEAM+ D Q + PRAMIL+RKYRTLVS+WIEP
Sbjct: 370 NEGNCGDPLSLYLRSLCLDGRADELLEALEAMSNDGQTIAPRAMILNRKYRTLVSTWIEP 429
Query: 418 LQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRC 477
LQEEA++G+EIDY+ARYI EGGLTGERKRWVPRRGKTPLDPD GF YSNP+ETSFKQRC
Sbjct: 430 LQEEADVGFEIDYVARYIEEGGLTGERKRWVPRRGKTPLDPDEFGFAYSNPIETSFKQRC 489
Query: 478 LEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVV 537
E+ K YHRKLL TL+NEGP +LGDVSE D RV ERLKKL+ GP+++V+KPKAASKMVV
Sbjct: 490 FEELKLYHRKLLITLRNEGPGILGDVSEDDVRRVIERLKKLVVGPKKNVVKPKAASKMVV 549
Query: 538 SELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELIS 597
SELK EL+AQGLPTDGTR VLYQRVQKARRINRSRG PLWV P E+EEEVDEE+DELIS
Sbjct: 550 SELKTELEAQGLPTDGTRQVLYQRVQKARRINRSRGIPLWV-PPVEDEEEVDEELDELIS 608
Query: 598 RIKLEEGNTEFWKRRFLGEGLNGRHDKA----VEMDESELSDVLDDDVTDVEYVAKDEEA 653
RIKLE+GNTEFWKRRFLGE N ++ + + D DD+ D + K EE
Sbjct: 609 RIKLEDGNTEFWKRRFLGETRNYLCEEVNDEEDADLDDDELDDDDDEDDDDDDTTKGEED 668
Query: 654 DEEEEVEQAEPESQDVDRVKEKLVEA-KKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMV 712
+ +EE + E+Q D K+K + K+ LQMIGVQLLKD ++T+ +S K+S R+
Sbjct: 669 EIDEEDAVEQTENQAGDETKDKPSKGPKQHLQMIGVQLLKDLEKTSVSS----KKSKRVP 724
Query: 713 EDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEV 772
E DDDEDWFPEDP EAFK MR+ ++FDVSDMYT ADAWGWTWEREI N+ P+KWSQEWEV
Sbjct: 725 EIDDDEDWFPEDPIEAFKVMRETRLFDVSDMYTTADAWGWTWEREIKNKMPRKWSQEWEV 784
Query: 773 ELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEI 832
ELAI+IM KVI+LGGTPTIGDCA+I+RAA+R PLPSAF+ ILQ THSLGY FGSPLYDE
Sbjct: 785 ELAIKIMHKVIDLGGTPTIGDCAIILRAAMRVPLPSAFMTILQTTHSLGYKFGSPLYDEA 844
Query: 833 ISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGETS 877
I LCLDL E+DAA+A+VA+MET GI VPD+TLD+V+ ++Q+G S
Sbjct: 845 ILLCLDLEEIDAAIAVVAEMETNGIKVPDETLDKVLAAKQSGGNS 889
>gi|125575056|gb|EAZ16340.1| hypothetical protein OsJ_31803 [Oryza sativa Japonica Group]
Length = 764
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/760 (72%), Positives = 633/760 (83%), Gaps = 11/760 (1%)
Query: 124 MHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEEL 183
M SL+RELS+GVRPLHET +AL R+F KGLAT+G+EILAAME+ YDIR+AWLILVEEL
Sbjct: 1 MQSLRRELSSGVRPLHETFVALVRVFAKKGLATRGMEILAAMERYKYDIRKAWLILVEEL 60
Query: 184 VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATT 243
V N YLEDAN VFL+G +GGL+ TDEIYDL+I EDCKAGDHSNAL +AY+MEA+GRMATT
Sbjct: 61 VNNNYLEDANTVFLKGTEGGLQGTDEIYDLLIEEDCKAGDHSNALTVAYKMEASGRMATT 120
Query: 244 FHFNHLLSCQATCGIPEVAFATFENMEYG-EDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
FHFN LLS QATCGIPE+AFATFENMEYG E YMKPDTE+YN VIQA+TRA SYDR DV
Sbjct: 121 FHFNCLLSVQATCGIPEIAFATFENMEYGGEGYMKPDTESYNWVIQAFTRATSYDRAGDV 180
Query: 303 AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF 362
AELLGMMVEDHKR+QPN +TYALLVECFTKY V EAIRHFRAL+ GGTKVL+NEGN
Sbjct: 181 AELLGMMVEDHKRIQPNARTYALLVECFTKYSMVNEAIRHFRALRRIPGGTKVLYNEGNC 240
Query: 363 GDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEA 422
GDPLSLYLR+LC +GR ELLEALEAM+ D Q + PRAMIL+RKYRTLVS+WIEPLQEEA
Sbjct: 241 GDPLSLYLRSLCLDGRADELLEALEAMSNDGQTIAPRAMILNRKYRTLVSTWIEPLQEEA 300
Query: 423 ELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGK 482
++G+EIDY+ARYI EGGLTGERKRWVPRRGKTPLDPD GF YSNP+ETSFKQRC E+ K
Sbjct: 301 DVGFEIDYVARYIEEGGLTGERKRWVPRRGKTPLDPDEFGFAYSNPIETSFKQRCFEELK 360
Query: 483 KYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKE 542
YHRKLL TL+NEGP +LGDVSE D RV ERLKKL+ GP+++V+KPKAASKMVVSELK
Sbjct: 361 LYHRKLLITLRNEGPGILGDVSEDDVRRVIERLKKLVVGPKKNVVKPKAASKMVVSELKT 420
Query: 543 ELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLE 602
EL+AQGLPTDGTR VLYQRVQKARRINRSRG PLWV P E+EEEVDEE+DELISRIKLE
Sbjct: 421 ELEAQGLPTDGTRQVLYQRVQKARRINRSRGIPLWV-PPVEDEEEVDEELDELISRIKLE 479
Query: 603 EGNTEFWKRRFLGEGLNGRHDKA----VEMDESELSDVLDDDVTDVEYVAKDEEADEEEE 658
+GNTEFWKRRFLGE N ++ + + D DD+ D + K EE + +EE
Sbjct: 480 DGNTEFWKRRFLGETRNYLCEEVNDEEDADLDDDELDDDDDEDDDDDDTTKGEEDEIDEE 539
Query: 659 VEQAEPESQDVDRVKEKLVEA-KKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDD 717
+ E+Q D K+K + K+ LQMIGVQLLKD ++T+ +S K+S R+ E DDD
Sbjct: 540 DAVEQTENQAGDETKDKPSKGPKQHLQMIGVQLLKDLEKTSVSS----KKSKRVPEIDDD 595
Query: 718 EDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQ 777
EDWFPEDP EAFK MR+ ++FDVSDMYT ADAWGWTWEREI N+ P+KWSQEWEVELAI+
Sbjct: 596 EDWFPEDPIEAFKVMRETRLFDVSDMYTTADAWGWTWEREIKNKMPRKWSQEWEVELAIK 655
Query: 778 IMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCL 837
IM KVI+LGGTPTIGDCA+I+RAA+R PLPSAF+ ILQ THSLGY FGSPLYDE I LCL
Sbjct: 656 IMHKVIDLGGTPTIGDCAIILRAAMRVPLPSAFMTILQTTHSLGYKFGSPLYDEAILLCL 715
Query: 838 DLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGETS 877
DL E+DAA+A+VA+MET GI VPD+TLD+V+ ++Q+G S
Sbjct: 716 DLEEIDAAIAVVAEMETNGIKVPDETLDKVLAAKQSGGNS 755
>gi|218184690|gb|EEC67117.1| hypothetical protein OsI_33922 [Oryza sativa Indica Group]
Length = 836
Score = 1051 bits (2719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/761 (72%), Positives = 636/761 (83%), Gaps = 12/761 (1%)
Query: 124 MHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEEL 183
M SL+RELS+GVRPLHET +AL R+F KGLAT+G+EILAAME+ YDIR+AWLILVEEL
Sbjct: 72 MQSLRRELSSGVRPLHETFVALVRVFAKKGLATRGMEILAAMERYKYDIRKAWLILVEEL 131
Query: 184 VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATT 243
V N YLEDAN VFL+G +GGL+ TDEIYDL+I EDCKAGDHSNAL +AY+MEA+GRMATT
Sbjct: 132 VNNNYLEDANTVFLKGTEGGLQGTDEIYDLLIEEDCKAGDHSNALTVAYKMEASGRMATT 191
Query: 244 FHFNHLLSCQATCGIPEVAFATFENMEYG-EDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
FHFN LLS QATCGIPE+AFATFENMEYG E YMKPDTE+YN VIQA+TRA SYDR DV
Sbjct: 192 FHFNCLLSVQATCGIPEIAFATFENMEYGGEGYMKPDTESYNWVIQAFTRATSYDRAGDV 251
Query: 303 AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF 362
AELLGMMVEDHKR+QPN +TYALLVECFTKY V EAIRHFRAL+ GGTKVL+NEGN
Sbjct: 252 AELLGMMVEDHKRIQPNARTYALLVECFTKYSMVNEAIRHFRALRRIPGGTKVLYNEGNC 311
Query: 363 GDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEA 422
GDPLSLYLR+LC +GR ELLEALEAM+ D Q + PRAMIL+RKYRTLVS+WIEPLQEEA
Sbjct: 312 GDPLSLYLRSLCLDGRADELLEALEAMSNDGQTIAPRAMILNRKYRTLVSTWIEPLQEEA 371
Query: 423 ELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGK 482
++G+EIDY+ARYI EGGLTGERKRWVPRRGKTPLDPD GF YSNP+ETSFKQRC E+ K
Sbjct: 372 DVGFEIDYVARYIEEGGLTGERKRWVPRRGKTPLDPDEFGFAYSNPIETSFKQRCFEELK 431
Query: 483 KYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKE 542
YHRKLL TL+NEGP +LGDVSE D RV ERLKKL+ GP+++V+KPKAASKMVVSELK
Sbjct: 432 LYHRKLLITLRNEGPGILGDVSEDDVRRVIERLKKLVVGPKKNVVKPKAASKMVVSELKT 491
Query: 543 ELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLE 602
EL+AQGLPTDGTR VLYQRVQKARRINRSRG PLWV P E+EEEVDEE+DELISRIKLE
Sbjct: 492 ELEAQGLPTDGTRQVLYQRVQKARRINRSRGIPLWV-PPVEDEEEVDEELDELISRIKLE 550
Query: 603 EGNTEFWKRRFLGEGLNGRHDKA-----VEMDESELSDVLDDDVTDVEYVAKDEEADEEE 657
+GNTEFWKRRFLGE N ++ ++D+ EL D DD+ D + K EE + +E
Sbjct: 551 DGNTEFWKRRFLGETRNYLCEEVNDEEDADLDDDELDDDDDDEDDDDDDTTKGEEDEIDE 610
Query: 658 EVEQAEPESQDVDRVKEKLVEA-KKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDD 716
E + E+Q D K+K + K+ LQMIGVQLLKD ++T+ +S K+S R+ E DD
Sbjct: 611 EDAVEQTENQAGDETKDKPSKGPKQHLQMIGVQLLKDLEKTSVSS----KKSKRVPEIDD 666
Query: 717 DEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAI 776
DEDWFPEDP EAFK MR+ ++FDVSDMYT ADAWGWTWERE N+ P+KWSQEWEVELAI
Sbjct: 667 DEDWFPEDPIEAFKVMRETRLFDVSDMYTTADAWGWTWERERKNKMPRKWSQEWEVELAI 726
Query: 777 QIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLC 836
+IM KVI+LGGTPTIGDCA+I+RAA+R PLPSAF+ ILQ THSLGY FGSPLYDE I LC
Sbjct: 727 KIMHKVIDLGGTPTIGDCAIILRAAMRVPLPSAFMTILQTTHSLGYKFGSPLYDEAILLC 786
Query: 837 LDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGETS 877
LDL E+DAA+A+VA+MET GI VPD+TLD+V+ ++Q+G S
Sbjct: 787 LDLEEIDAAIAVVAEMETNGIKVPDETLDKVLAAKQSGGNS 827
>gi|449449687|ref|XP_004142596.1| PREDICTED: uncharacterized protein LOC101209618 [Cucumis sativus]
Length = 1177
Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/579 (80%), Positives = 518/579 (89%), Gaps = 3/579 (0%)
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
VQDVAELLGMMVEDHKRLQPN++TYALLVECFTKYC + EAIRHFRAL+ +EGGT LHN
Sbjct: 576 VQDVAELLGMMVEDHKRLQPNMRTYALLVECFTKYCVIREAIRHFRALRTFEGGTTALHN 635
Query: 359 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL 418
EGNFGDPLSLYLRALCREGR++ELLEALEAMA+DNQ +PPRAMILSRKYR+LVSSWIEPL
Sbjct: 636 EGNFGDPLSLYLRALCREGRVVELLEALEAMARDNQQIPPRAMILSRKYRSLVSSWIEPL 695
Query: 419 QEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCL 478
QEEAE G+EIDYIARYI EGGLTGERKRWVPR+GKTPLDPDA GFIYSNPMETSFKQRCL
Sbjct: 696 QEEAEHGFEIDYIARYIEEGGLTGERKRWVPRKGKTPLDPDADGFIYSNPMETSFKQRCL 755
Query: 479 EDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVS 538
ED K YHRK+L+TLQNEG L D SE+DY RV ERL+K+IKGP+Q+VLKPKAASKM+VS
Sbjct: 756 EDWKMYHRKILKTLQNEGLVALRDASEADYHRVVERLRKIIKGPDQNVLKPKAASKMIVS 815
Query: 539 ELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISR 598
ELKEEL+AQGLP DGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEE+DELISR
Sbjct: 816 ELKEELEAQGLPIDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDELISR 875
Query: 599 IKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAK-DEEADEEE 657
IKL EGNTEFWKRRFLGEGL + K E D+S+ D L DDV +E VAK EE + EE
Sbjct: 876 IKLHEGNTEFWKRRFLGEGLYSNNVKPSEDDKSDPLDSL-DDVDTIEDVAKEIEEEEAEE 934
Query: 658 EVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRM-VEDDD 716
E E + E+QD +RV +K VEAKKPLQMIGVQLLKD DQ TTTSK+S +RSSR +EDD
Sbjct: 935 EEEVEQTENQDGERVIKKEVEAKKPLQMIGVQLLKDVDQPTTTSKKSRRRSSRASLEDDR 994
Query: 717 DEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAI 776
DEDWFPED FEAFKE++KRKVFDVSDMYTIAD WGWTWERE+ NRPP++WSQEWEVELAI
Sbjct: 995 DEDWFPEDIFEAFKELQKRKVFDVSDMYTIADVWGWTWERELKNRPPRRWSQEWEVELAI 1054
Query: 777 QIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLC 836
+IM KVIELGG PTIGDCA+I+RAAI+APLPSAFLKILQ TH LGYVFGSPLYDE+I+LC
Sbjct: 1055 KIMHKVIELGGIPTIGDCAMILRAAIKAPLPSAFLKILQTTHGLGYVFGSPLYDEVITLC 1114
Query: 837 LDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGE 875
LDLGELDAA+AIVAD+ETTGI V D+TLDRVI++RQT +
Sbjct: 1115 LDLGELDAAIAIVADLETTGILVHDETLDRVISARQTND 1153
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/255 (74%), Positives = 217/255 (85%), Gaps = 5/255 (1%)
Query: 22 GVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHAR 81
G++PIRS +S+P+K+ R+K+Q R QQ+ L + ++ E LR FMEELM AR
Sbjct: 26 GLLPIRSVLSAPDKRGRKKRQSRHQQQ-----LQPKDNDSTSLENSLRFTFMEELMDRAR 80
Query: 82 NRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET 141
N D V+DVIYDM+AAGLSPGPRSFHGLVV++TLNGD EGAM SL+RELSAG+ PLHET
Sbjct: 81 NHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTEGAMQSLRRELSAGLLPLHET 140
Query: 142 LIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
+AL RLFGSKGLA +GLEILAAMEK+NYDIRQAWLIL EELVR+KYLEDANKVFL+GAK
Sbjct: 141 FVALVRLFGSKGLANRGLEILAAMEKLNYDIRQAWLILTEELVRSKYLEDANKVFLKGAK 200
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
GLRATD+IYDLMI EDCKAGDHSNALEI+YEMEAAGRMATTFHFN LLS QATCGIPE+
Sbjct: 201 AGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQATCGIPEI 260
Query: 262 AFATFENMEYGEDYM 276
AF+TFENMEYGE Y+
Sbjct: 261 AFSTFENMEYGEGYI 275
>gi|22165107|gb|AAM93724.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 730
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/641 (71%), Positives = 525/641 (81%), Gaps = 7/641 (1%)
Query: 59 SVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG 118
+ A E+GLRL F+E+L + AR DA V D IYDM+AAGLSPGPRSFHGLV A+ L G
Sbjct: 70 AAAGAVEKGLRLAFLEQLAERARAADAAGVADAIYDMVAAGLSPGPRSFHGLVAAHVLAG 129
Query: 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI 178
D EGAM SL+RELS+GVRPLHET +AL R+F KGLAT+G+EILAAME+ YDIR+AWLI
Sbjct: 130 DAEGAMQSLRRELSSGVRPLHETFVALVRVFAKKGLATRGMEILAAMERYKYDIRKAWLI 189
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LVEELV N YLEDAN VFL+G +GGL+ TDEIYDL+I EDCKAGDHSNAL +AY+MEA+G
Sbjct: 190 LVEELVNNNYLEDANTVFLKGTEGGLQGTDEIYDLLIEEDCKAGDHSNALTVAYKMEASG 249
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYG-EDYMKPDTETYNCVIQAYTRAESYD 297
RMATTFHFN LLS QATCGIPE+AFATFENMEYG E YMKPDTE+YN VIQA+TRA SYD
Sbjct: 250 RMATTFHFNCLLSVQATCGIPEIAFATFENMEYGGEGYMKPDTESYNWVIQAFTRATSYD 309
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
R DVAELLGMMVEDHKR+QPN +TYALLVECFTKY V EAIRHFRAL+ GGTKVL+
Sbjct: 310 RAGDVAELLGMMVEDHKRIQPNARTYALLVECFTKYSMVNEAIRHFRALRRIPGGTKVLY 369
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP 417
NEGN GDPLSLYLR+LC +GR ELLEALEAM+ D Q + PRAMIL+RKYRTLVS+WIEP
Sbjct: 370 NEGNCGDPLSLYLRSLCLDGRADELLEALEAMSNDGQTIAPRAMILNRKYRTLVSTWIEP 429
Query: 418 LQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRC 477
LQEEA++G+EIDY+ARYI EGGLTGERKRWVPRRGKTPLDPD GF YSNP+ETSFKQRC
Sbjct: 430 LQEEADVGFEIDYVARYIEEGGLTGERKRWVPRRGKTPLDPDEFGFAYSNPIETSFKQRC 489
Query: 478 LEDGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVV 537
E+ K YHRKLL TL+NEGP +LGDVSE D RV ERLKKL+ GP+++V+KPKAASKMVV
Sbjct: 490 FEELKLYHRKLLITLRNEGPGILGDVSEDDVRRVIERLKKLVVGPKKNVVKPKAASKMVV 549
Query: 538 SELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELIS 597
SELK EL+AQGLPTDGTR VLYQRVQKARRINRSRG PLWV P E+EEEVDEE+DELIS
Sbjct: 550 SELKTELEAQGLPTDGTRQVLYQRVQKARRINRSRGIPLWV-PPVEDEEEVDEELDELIS 608
Query: 598 RIKLEEGNTEFWKRRFLGEGLNGRHDKA----VEMDESELSDVLDDDVTDVEYVAKDEEA 653
RIKLE+GNTEFWKRRFLGE N ++ + + D DD+ D + K EE
Sbjct: 609 RIKLEDGNTEFWKRRFLGETRNYLCEEVNDEEDADLDDDELDDDDDEDDDDDDTTKGEED 668
Query: 654 DEEEEVEQAEPESQDVDRVKEKLVEA-KKPLQMIGVQLLKD 693
+ +EE + E+Q D K+K + K+ LQMIGVQLLKD
Sbjct: 669 EIDEEDAVEQTENQAGDETKDKPSKGPKQHLQMIGVQLLKD 709
>gi|168014298|ref|XP_001759689.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689228|gb|EDQ75601.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 803
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/813 (48%), Positives = 538/813 (66%), Gaps = 26/813 (3%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
+F+E +M+ AR D V + + M AGL GPR+++GL VAY +GD EGA+ +LK+
Sbjct: 1 MFLEAIMEKARKADVEGVEEALTGMSLAGLDAGPRAYYGLTVAYARSGDPEGAVQALKKA 60
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE 190
+ AGV PL E+++A RL+GS G +G EILAAMEK+NY+ R AWL LVEEL+ N YL+
Sbjct: 61 VQAGVNPLPESMLACVRLYGSTGQPQRGKEILAAMEKLNYNPRVAWLTLVEELLNNSYLQ 120
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+AN+V++ G +GGLR TD ++D ++ + GDH+N + + ME GRM+TTFH+N LL
Sbjct: 121 EANEVYIEGLEGGLRGTDVLFDRIVEANSIIGDHANCISVLRLMEYGGRMSTTFHYNCLL 180
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
Q +P++ TFE M+YG D MKPDTE+YN V+Q+Y R + DR Q+V +LLG MV
Sbjct: 181 RAQCMADVPDIIAMTFETMQYGRDEMKPDTESYNWVLQSYVRHKFGDRCQEVIDLLGEMV 240
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF--GDPLSL 368
EDHKR+QPN +TYALLVECF+KY EA+RHFRAL G T L NEG+ DPLSL
Sbjct: 241 EDHKRVQPNQRTYALLVECFSKYDHFNEAVRHFRALVRNPGSTTFLFNEGHGRDTDPLSL 300
Query: 369 YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEI 428
Y+R LC EGR +L+E LE+M +DNQP+P RA++++++ RTLVSSWIEPLQ+E +LGY+I
Sbjct: 301 YIRGLCLEGRAGDLVEVLESMVRDNQPLPARALLVNKRGRTLVSSWIEPLQQEPDLGYDI 360
Query: 429 DYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKL 488
DY+AR+++EGG G RKR+ G D GF Y+ P+E S+K K Y+ +L
Sbjct: 361 DYVARFLAEGGGDGTRKRFTDSVGGRFKAVDDDGFAYAAPLEVSYKSFLTHMRKNYNLRL 420
Query: 489 LRTLQNEGPAVLG-DVSESDYVRVEERLKKLIKGPEQH-VLKPKAASKMVVSELKEELDA 546
LR L+ EG LG +E+D RV ERLKK +G + + KPKAASKM+VSELK+EL+A
Sbjct: 421 LRKLRLEGVRALGPGATEADLHRVIERLKKDTRGDVGYQIRKPKAASKMLVSELKDELEA 480
Query: 547 QGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEE-EEEVDEEVDELISRIKLEEGN 605
QGLPT+GTR VLYQRVQKARRIN++RGRPLWVPP E+E +E DEE+D + R+ L+ N
Sbjct: 481 QGLPTEGTRPVLYQRVQKARRINKARGRPLWVPPTEDELDERHDEEIDMFMERLTLKNEN 540
Query: 606 TEFWKRRFLGEGLNGRHDKAVEMDESE-LSDVLDDDVTDVEYVAKDEEADEEEEVEQAEP 664
+EFW++RF+G A +DE E L D + DE+ D+E+E++ +
Sbjct: 541 SEFWRKRFIG--------GAGILDEEESLYQASADSDEETFADDDDEDDDDEDELQVTDS 592
Query: 665 ESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPED 724
V+ E+ + +P +M+ +QLLK+ + K ED + +W
Sbjct: 593 ADDLVEDGGEE--DVGEPPEMLAMQLLKNKKEEVPVVKE---------EDREGSEWLGLT 641
Query: 725 PFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIE 784
E M++R + D S YTIAD WGWTWE+EI +R P+ WSQE EV+LAI+IMLKV
Sbjct: 642 LDEKITFMKERGM-DESAFYTIADVWGWTWEQEIRDRVPEDWSQEKEVQLAIEIMLKVQA 700
Query: 785 LGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDA 844
LGG PTI D +++RAA+R P P A + +LQ +H LGY FGS LY E + LCL LGE DA
Sbjct: 701 LGGIPTINDMGILVRAAMRTPWPEALVSLLQHSHKLGYAFGSKLYAEAVRLCLSLGEKDA 760
Query: 845 AVAIVADMETTGIAVPDQTLDRVITSRQTGETS 877
A+ I++DME G+A P L V+ Q + S
Sbjct: 761 AINIISDMEDMGVAAPPDLLTDVLEETQFRQIS 793
>gi|449479780|ref|XP_004155705.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 501
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/414 (78%), Positives = 364/414 (87%), Gaps = 13/414 (3%)
Query: 22 GVVPIRSAMSSPEKKTRRK----KQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELM 77
G++PIRS +S+P+K+ R+K QQ+ Q K DS ++ E LR FMEELM
Sbjct: 26 GLLPIRSVLSAPDKRGRKKRRSRHQQQLQPKDNDS---------TSLENSLRFTFMEELM 76
Query: 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP 137
AR+ D V+DVIYDM+AAGLSPGPRSFHGLVV++TLNGD EGAM SL+RELSAG+ P
Sbjct: 77 DRARDHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTEGAMQSLRRELSAGLLP 136
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFL 197
LHET +AL RLFGSKGLA +GLEILAAMEK+NYDIRQAWLIL EELVR+KYLEDANKVFL
Sbjct: 137 LHETFVALVRLFGSKGLANRGLEILAAMEKLNYDIRQAWLILTEELVRSKYLEDANKVFL 196
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+GAK GLRATD+IYDLMI EDCKAGDHSNALEI+YEMEAAGRMATTFHFN LLS QATCG
Sbjct: 197 KGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQATCG 256
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
IPE+AF+TFENMEYGEDYMKPDTETYN VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ
Sbjct: 257 IPEIAFSTFENMEYGEDYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 316
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
PN++TYALLVECFTKYC + EAIRHFRAL+ +EGGT LHNEGNFGDPLSLYLRALCREG
Sbjct: 317 PNMRTYALLVECFTKYCVIREAIRHFRALRTFEGGTTALHNEGNFGDPLSLYLRALCREG 376
Query: 378 RIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYI 431
R++ELLEALEAMA+DNQ +PPRAMILSRKYR+LVSSWIEPLQEEAE G+EIDYI
Sbjct: 377 RVVELLEALEAMARDNQQIPPRAMILSRKYRSLVSSWIEPLQEEAEHGFEIDYI 430
>gi|302771664|ref|XP_002969250.1| hypothetical protein SELMODRAFT_170612 [Selaginella moellendorffii]
gi|300162726|gb|EFJ29338.1| hypothetical protein SELMODRAFT_170612 [Selaginella moellendorffii]
Length = 810
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/827 (42%), Positives = 528/827 (63%), Gaps = 39/827 (4%)
Query: 61 VSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDH 120
++A E+ LR F+E LM++AR+ + V +V+ +M GL PGPRSFHGLV AY D
Sbjct: 1 MNAEEKELRFYFLESLMENARSGNIDGVEEVMSEMDVVGLKPGPRSFHGLVAAYAQANDV 60
Query: 121 EGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILV 180
EGA+ +L++E+++G PL ET +A+ARL G GL + +IL A+E N D R AW++
Sbjct: 61 EGALQALRKEIASGETPLQETFVAVARLLGRAGLRDRAEKILGAIEGANLDTRTAWVVTC 120
Query: 181 EELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
EEL YL +AN +F++GA GG RA++ +YD+++ E+CK G H A+ I ME+ GR+
Sbjct: 121 EELFNAGYLNEANDLFMKGANGGFRASEHLYDILVEENCKTGKHGVAINILRSMESRGRL 180
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY----MKPDTETYNCVIQAYTRAESY 296
ATTFH+N LL Q P++A TFE M+Y KPDTE++N +IQA TR ++
Sbjct: 181 ATTFHYNCLLLAQGNANFPDIAEDTFEEMQYLRRESIPDTKPDTESFNLMIQAQTRCDNG 240
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN-YEGGTKV 355
+RV +V L+G M E + +++PN +TYAL+VEC+ K+ + EA+RHFRAL + G V
Sbjct: 241 ERVHEVIVLIGHMTELYPQVKPNARTYALIVECYVKFNFMDEAMRHFRALTKLFPGSLHV 300
Query: 356 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
LH +G GDPLSL +R+LC EGRI++L+E L+ M ++ + PRAM ++RK RTLVSSWI
Sbjct: 301 LHCDGKHGDPLSLLIRSLCLEGRIVQLVEVLDLMLQEGLKLTPRAMFMNRKGRTLVSSWI 360
Query: 416 EPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTP--LDPDAVGFIYSNPMETSF 473
EP+QEEA++G EID++ARYI+EGGLTG R+RW P K P + PD G+ +S P+E S+
Sbjct: 361 EPIQEEADIGCEIDFVARYIAEGGLTGTRRRWTPAARKDPNRILPDYDGYRFSPPVEKSY 420
Query: 474 KQRCLEDGKKYHRKLLRTLQNEGPAVLG-DVSESDYVRVEERLKK-LIKGPEQHVLKPKA 531
KQ C ++Y RKL+ LQ EG LG + E +Y + ERLKK ++ V KPKA
Sbjct: 421 KQYCSIKRQEYKRKLIHLLQFEGVYALGENAREEEYTAILERLKKENVRKRLSDVRKPKA 480
Query: 532 ASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEE 591
ASK+ V+E+KEEL+AQGLPTDG R +LYQRVQKARRIN ++G PLW+PP EE EEVDEE
Sbjct: 481 ASKLSVAEMKEELEAQGLPTDGNRRLLYQRVQKARRINLAKGAPLWMPPEEETIEEVDEE 540
Query: 592 VDELISRIKLEEGNTEFWKRRFL-GEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKD 650
+ ++++I L ++ ++ F+ G GL + + M V+++ +++E A
Sbjct: 541 FETVLAKIDLRNPRQQYRRKCFIEGVGLENLYKENPRM-------VIEESDSEMEEDA-- 591
Query: 651 EEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKR--- 707
+AEP + V+E E +P+ V ++ +TT +
Sbjct: 592 ----------EAEPREVEGHVVREDEEEIIQPVDGGEVDETTEASKTTDDEDEEEEEVVE 641
Query: 708 ------SSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWEREITNR 761
+ D+ + + P E E+ K FD +M I + WGWTWER++ +
Sbjct: 642 VSPAVVGNEPASDNIEGAYKPLTLEEKRAELAAMK-FDFREMDEIEEIWGWTWERDLQAQ 700
Query: 762 PPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLG 821
PP+ W+++ EVEL+IQ++ KV+ELGG+PT+ DCA+++R A++ P P + + +++K+H G
Sbjct: 701 PPEIWTRKREVELSIQLLDKVLELGGSPTLSDCAMLVRNAMKLPWPESVVTLIRKSHKCG 760
Query: 822 YVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVI 868
+ FGS LY++ + CL + E DAA+AI+ DME +G++ P++ L RV+
Sbjct: 761 HKFGSKLYEDAVMSCLSVQENDAAIAILTDMEESGVSTPNELLGRVL 807
>gi|302754366|ref|XP_002960607.1| hypothetical protein SELMODRAFT_164431 [Selaginella moellendorffii]
gi|300171546|gb|EFJ38146.1| hypothetical protein SELMODRAFT_164431 [Selaginella moellendorffii]
Length = 810
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/833 (42%), Positives = 529/833 (63%), Gaps = 51/833 (6%)
Query: 61 VSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDH 120
++A E+ LR F+E LM++AR+ + V +V+ +M GL PGPRSFHGLV AY D
Sbjct: 1 MNAEEKELRFYFLESLMENARSGNIDGVEEVMSEMDVVGLKPGPRSFHGLVAAYAQANDV 60
Query: 121 EGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILV 180
EGA+ +L++E+++G PL ET +A+ARL G GL + +IL A+E N D R AW++
Sbjct: 61 EGALQALRKEIASGETPLQETFVAVARLLGRAGLRDRAEKILGAIEGANLDTRTAWVVTC 120
Query: 181 EELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
EEL YL +AN +F++GA GG RA++ +YD+++ E+CK G H A+ I ME+ GR+
Sbjct: 121 EELFNAGYLNEANDLFMKGANGGFRASEHLYDILVEENCKTGKHGVAINILRSMESRGRL 180
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY----MKPDTETYNCVIQAYTRAESY 296
ATTFH+N LL Q P++A TFE M+Y KPDTE++N +IQA TR ++
Sbjct: 181 ATTFHYNCLLLAQGNANFPDIAEDTFEEMQYLRRESIPDTKPDTESFNLMIQAQTRCDNG 240
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN-YEGGTKV 355
+RV +V L+G M E + +++PN +TYAL+VEC+ K+ + EA+RHFRAL + G V
Sbjct: 241 ERVHEVIVLIGHMTELYPQVKPNARTYALIVECYVKFNFMDEAMRHFRALTKLFPGSLHV 300
Query: 356 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
LH +G GDPLSL +R+LC EGRI++L+E L+ M ++ + PRAM ++RK RTLVSSWI
Sbjct: 301 LHCDGKHGDPLSLLIRSLCLEGRIVQLVEVLDLMLQEGLKLTPRAMFMNRKGRTLVSSWI 360
Query: 416 EPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTP--LDPDAVGFIYSNPMETSF 473
EP+QEEA++G EID++ARYI+EGGLTG R+RW P K P + PD G+ +S P+E S+
Sbjct: 361 EPMQEEADIGCEIDFVARYIAEGGLTGTRRRWTPAARKDPNRILPDYDGYRFSPPVEKSY 420
Query: 474 KQRCLEDGKKYHRKLLRTLQNEGPAVLG-DVSESDYVRVEERLKK-LIKGPEQHVLKPKA 531
KQ C ++Y RKL+ LQ EG LG + E +Y + ERLKK ++ V KPKA
Sbjct: 421 KQYCSIKRQEYKRKLIHLLQFEGVYALGENAREEEYTAILERLKKENVRKRLSDVRKPKA 480
Query: 532 ASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEE 591
ASK+ V+E+KEEL+AQGLPTDG R +LYQRVQKARRIN ++G PLW+PP EE EEVDEE
Sbjct: 481 ASKLSVAEMKEELEAQGLPTDGNRRLLYQRVQKARRINLAKGAPLWMPPEEETIEEVDEE 540
Query: 592 VDELISRIKLEEGNTEFWKRRFL-GEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAKD 650
+ ++++I L ++ ++ F+ G GL + + M V+++ +++E A+
Sbjct: 541 FETVLAKIDLRNPRQQYRRKCFIEGVGLENLYKENPRM-------VIEESDSEMEEDAEA 593
Query: 651 EEADEEEEVEQAEPESQDVDRVKEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKR--- 707
E + E V V+E E +P+ + D+TT SK +
Sbjct: 594 ESREVEGHV------------VREDEEEIIQPVDG------GEVDETTEASKATDDEDEE 635
Query: 708 ------------SSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMYTIADAWGWTWE 755
+ D+ + + P E E+ K FD +M I + WGWTWE
Sbjct: 636 EEEVVEVSPAVVGNEPASDNIEGAYKPLTLEEKRAELAAMK-FDFREMDEIEEIWGWTWE 694
Query: 756 REITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQ 815
R++ +PP+ W+++ EVEL+IQ++ KV+ELGG+PT+ DCA+++R A++ P P + + +++
Sbjct: 695 RDLQAQPPEIWTRKREVELSIQLLDKVLELGGSPTLSDCAMLVRNAMKLPWPESVVTLIR 754
Query: 816 KTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVI 868
K+H G+ FGS LY++ + CL + E DAA+AI+ DME +G++ P++ L RV+
Sbjct: 755 KSHKCGHKFGSKLYEDAVMSCLSVQENDAAIAILTDMEESGVSTPNELLGRVL 807
>gi|449533258|ref|XP_004173593.1| PREDICTED: uncharacterized LOC101209618, partial [Cucumis sativus]
Length = 378
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 298/379 (78%), Positives = 330/379 (87%), Gaps = 3/379 (0%)
Query: 434 YISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQ 493
YI EGGLTGERKRWVPR+GKTPLDPDA GFIYSNPMETSFKQRCLED K YHRK+L+TLQ
Sbjct: 1 YIEEGGLTGERKRWVPRKGKTPLDPDADGFIYSNPMETSFKQRCLEDWKMYHRKILKTLQ 60
Query: 494 NEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDG 553
NEG L D SE+DY RV ERL+K+IKGP+Q+VLKPKAASKM+VSELKEEL+AQGLP DG
Sbjct: 61 NEGLVALRDASEADYHRVVERLRKIIKGPDQNVLKPKAASKMIVSELKEELEAQGLPIDG 120
Query: 554 TRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRF 613
TRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEE+DELISRIKL EGNTEFWKRRF
Sbjct: 121 TRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEELDELISRIKLHEGNTEFWKRRF 180
Query: 614 LGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYVAK-DEEADEEEEVEQAEPESQDVDRV 672
LGEGL + K E D+S+ D L DDV +E VAK EE + EEE E + E+QD +RV
Sbjct: 181 LGEGLYSNNVKPSEDDKSDPLDSL-DDVDTIEDVAKEIEEEEAEEEEEVEQTENQDGERV 239
Query: 673 KEKLVEAKKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRM-VEDDDDEDWFPEDPFEAFKE 731
+K VEAKKPLQMIGVQLLKD DQ TTTSK+S +RSSR +EDD DEDWFPED FEAFKE
Sbjct: 240 IKKEVEAKKPLQMIGVQLLKDVDQPTTTSKKSRRRSSRASLEDDRDEDWFPEDIFEAFKE 299
Query: 732 MRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTI 791
++KRKVFDVSDMYTIAD WGWTWERE+ NRPP++WSQEWEVELAI+IM KVIELGG PTI
Sbjct: 300 LQKRKVFDVSDMYTIADVWGWTWERELKNRPPRRWSQEWEVELAIKIMHKVIELGGIPTI 359
Query: 792 GDCAVIIRAAIRAPLPSAF 810
GDCA+I+RAAI+APLPSAF
Sbjct: 360 GDCAMILRAAIKAPLPSAF 378
>gi|414871209|tpg|DAA49766.1| TPA: hypothetical protein ZEAMMB73_347666 [Zea mays]
Length = 327
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/261 (77%), Positives = 228/261 (87%), Gaps = 1/261 (0%)
Query: 65 EQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAM 124
E+GLRL+F+E+L + AR DA V D IYDM+AAGLSPGPRSFHGLV A+ L G+ EGAM
Sbjct: 67 EKGLRLVFLEQLAERARAADATGVADTIYDMVAAGLSPGPRSFHGLVAAHVLAGNAEGAM 126
Query: 125 HSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELV 184
SL+RELS+GVRPLHET +AL R+F KGL+T+G+EILAAME+ YDIR+AWLILVEELV
Sbjct: 127 QSLRRELSSGVRPLHETFVALVRVFAKKGLSTRGMEILAAMERYKYDIRKAWLILVEELV 186
Query: 185 RNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTF 244
+N YLEDAN VFL+GAKGGLR TD+IYDL+I EDCKAGDHSNAL +AY+MEA GRMATTF
Sbjct: 187 KNHYLEDANTVFLKGAKGGLRGTDDIYDLLIEEDCKAGDHSNALTVAYQMEAYGRMATTF 246
Query: 245 HFNHLLSCQATCGIPEVAFATFENMEY-GEDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303
HFN LLS QATCGIPEVAFATFENMEY GEDYMKPDTE+YN VIQA+TRA SYDR DVA
Sbjct: 247 HFNCLLSVQATCGIPEVAFATFENMEYGGEDYMKPDTESYNWVIQAFTRATSYDRAADVA 306
Query: 304 ELLGMMVEDHKRLQPNVKTYA 324
ELLGMMVEDHKR+QPN +TYA
Sbjct: 307 ELLGMMVEDHKRIQPNARTYA 327
>gi|242039461|ref|XP_002467125.1| hypothetical protein SORBIDRAFT_01g020030 [Sorghum bicolor]
gi|241920979|gb|EER94123.1| hypothetical protein SORBIDRAFT_01g020030 [Sorghum bicolor]
Length = 327
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/267 (76%), Positives = 230/267 (86%), Gaps = 1/267 (0%)
Query: 59 SVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG 118
+ A E+GLRL F+E+L + AR DA V D IYDM+AAGLSPGPRSFHGLV A+ L G
Sbjct: 61 AAAGAVEKGLRLAFLEQLAERARAADAAGVADTIYDMVAAGLSPGPRSFHGLVAAHVLAG 120
Query: 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI 178
+ EGAM SL+RELS+GVRPLHET +AL R+F KGL+T+G+EILAAME+ YDIR+AWLI
Sbjct: 121 NAEGAMQSLRRELSSGVRPLHETFVALVRVFAKKGLSTRGMEILAAMERYKYDIRKAWLI 180
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LVEELV+N YLEDAN VFL+GAKGGLR TDEIYDL+I EDCKAGDHSNAL +AY+MEA+G
Sbjct: 181 LVEELVKNHYLEDANTVFLKGAKGGLRGTDEIYDLLIEEDCKAGDHSNALTVAYQMEASG 240
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEY-GEDYMKPDTETYNCVIQAYTRAESYD 297
RMATTFHFN LLS QATCGIPEVAFATFENMEY GEDYMKPDTE+YN VIQA+TRA SYD
Sbjct: 241 RMATTFHFNCLLSVQATCGIPEVAFATFENMEYGGEDYMKPDTESYNWVIQAFTRATSYD 300
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYA 324
R DVAELLGMMVEDHKR+QPN +TYA
Sbjct: 301 RAADVAELLGMMVEDHKRIQPNARTYA 327
>gi|357438353|ref|XP_003589452.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478500|gb|AES59703.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 271
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/249 (72%), Positives = 208/249 (83%), Gaps = 14/249 (5%)
Query: 25 PIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRD 84
P+R+A+SSPEK+TR+KKQ K D+LL E LR FMEELM ARNRD
Sbjct: 25 PVRAALSSPEKRTRKKKQV----KDDDTLL----------ENSLRFSFMEELMNRARNRD 70
Query: 85 APRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA 144
+ V+ V+YDMIAAGLSPGPRSFHGLVV+Y LNG+ + AM SL+REL AG+RP+HET +A
Sbjct: 71 STGVSQVMYDMIAAGLSPGPRSFHGLVVSYALNGNEQAAMDSLRRELGAGLRPIHETFVA 130
Query: 145 LARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
L RLFGSKG +T+GLEIL AME +NYDIR AW+IL+EELVRNK+LEDANKVFL+GAKGGL
Sbjct: 131 LVRLFGSKGHSTRGLEILGAMENLNYDIRHAWIILIEELVRNKHLEDANKVFLKGAKGGL 190
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
RATDE+YDL+I EDCKAGDHSNALEI+YEMEAAGRMATTFHFN LLS QATCGIPE+AF
Sbjct: 191 RATDELYDLLIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFT 250
Query: 265 TFENMEYGE 273
TFENMEYGE
Sbjct: 251 TFENMEYGE 259
>gi|147857882|emb|CAN82532.1| hypothetical protein VITISV_023135 [Vitis vinifera]
Length = 298
Score = 328 bits (842), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 173/269 (64%), Positives = 211/269 (78%), Gaps = 9/269 (3%)
Query: 2 SLFLRTPFPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVV 61
SL PF SP + + + + SA+SSPEK+ RRKK+ ++ ++ DS ++ + V
Sbjct: 3 SLLTYAHLPFKSPYPTNPRR-TLTLTSAISSPEKRPRRKKKTKQPKE--DSFVAV--TAV 57
Query: 62 SAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHE 121
SA E+ LRL FMEELM+ AR+ D V++V YDM+AAGLSPGPRSFHGL+V+ LNGD E
Sbjct: 58 SAGEKALRLTFMEELMEXARSADTAGVSEVFYDMVAAGLSPGPRSFHGLIVSTVLNGDDE 117
Query: 122 GAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVE 181
GAM SL+RELSAG+RPLHET +AL RLFGSKG AT+GLEILAAMEK+N+DIR+AWL+LVE
Sbjct: 118 GAMQSLRRELSAGLRPLHETFVALIRLFGSKGYATRGLEILAAMEKLNFDIRKAWLVLVE 177
Query: 182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA 241
ELVR+ +LEDANKVFL+GAKGGLRAT+E+YDL+I EDCK GDHSNAL IAYEMEAAGRMA
Sbjct: 178 ELVRHNHLEDANKVFLKGAKGGLRATNELYDLLIEEDCKVGDHSNALTIAYEMEAAGRMA 237
Query: 242 TTFHFNHLLSCQAT---CG-IPEVAFATF 266
TT+HFN LLS Q T CG +P F F
Sbjct: 238 TTYHFNCLLSVQYTNDLCGKLPTKPFIDF 266
>gi|242039459|ref|XP_002467124.1| hypothetical protein SORBIDRAFT_01g020020 [Sorghum bicolor]
gi|241920978|gb|EER94122.1| hypothetical protein SORBIDRAFT_01g020020 [Sorghum bicolor]
Length = 196
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 138/192 (71%), Positives = 164/192 (85%), Gaps = 4/192 (2%)
Query: 685 MIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFDVSDMY 744
MIGVQLLKD ++T +SK+ RM E DDDEDWFPEDP EAFK MR+ ++FDVSDMY
Sbjct: 1 MIGVQLLKDLEKTPVSSKKL----KRMPEIDDDEDWFPEDPIEAFKVMREERMFDVSDMY 56
Query: 745 TIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRA 804
T ADAWGWTWEREI N+ P+KWSQEWEVELAI+IM KVIELGGTPTIGDCA+I+RAA+RA
Sbjct: 57 TTADAWGWTWEREIKNKMPRKWSQEWEVELAIKIMHKVIELGGTPTIGDCAIILRAAMRA 116
Query: 805 PLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTL 864
PLPSAF+ ILQ THSLGY FGSPLYDE++ LCLDL E+DAA+A+VA+MET G VPD+TL
Sbjct: 117 PLPSAFIPILQTTHSLGYKFGSPLYDEVVLLCLDLEEIDAAIAVVAEMETCGFKVPDETL 176
Query: 865 DRVITSRQTGET 876
D+V+ S+Q+G +
Sbjct: 177 DKVLASKQSGNS 188
>gi|115482380|ref|NP_001064783.1| Os10g0462800 [Oryza sativa Japonica Group]
gi|113639392|dbj|BAF26697.1| Os10g0462800, partial [Oryza sativa Japonica Group]
Length = 216
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/198 (71%), Positives = 169/198 (85%), Gaps = 4/198 (2%)
Query: 680 KKPLQMIGVQLLKDSDQTTTTSKRSMKRSSRMVEDDDDEDWFPEDPFEAFKEMRKRKVFD 739
K+ LQMIGVQLLKD ++T+ +SK+S R+ E DDDEDWFPEDP EAFK MR+ ++FD
Sbjct: 14 KQHLQMIGVQLLKDLEKTSVSSKKS----KRVPEIDDDEDWFPEDPIEAFKVMRETRLFD 69
Query: 740 VSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIR 799
VSDMYT ADAWGWTWEREI N+ P+KWSQEWEVELAI+IM KVI+LGGTPTIGDCA+I+R
Sbjct: 70 VSDMYTTADAWGWTWEREIKNKMPRKWSQEWEVELAIKIMHKVIDLGGTPTIGDCAIILR 129
Query: 800 AAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAV 859
AA+R PLPSAF+ ILQ THSLGY FGSPLYDE I LCLDL E+DAA+A+VA+MET GI V
Sbjct: 130 AAMRVPLPSAFMTILQTTHSLGYKFGSPLYDEAILLCLDLEEIDAAIAVVAEMETNGIKV 189
Query: 860 PDQTLDRVITSRQTGETS 877
PD+TLD+V+ ++Q+G S
Sbjct: 190 PDETLDKVLAAKQSGGNS 207
>gi|255634266|gb|ACU17497.1| unknown [Glycine max]
Length = 213
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 145/182 (79%), Positives = 160/182 (87%), Gaps = 2/182 (1%)
Query: 469 METSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGD-VSESDYVRVEERLKKLIKGPEQHVL 527
METSFKQRCLE+ K +++KLL+TLQNEG A LGD VSESDY+RV+ERLKKLIKGPEQ+VL
Sbjct: 1 METSFKQRCLEELKLHNKKLLKTLQNEGLAALGDGVSESDYIRVQERLKKLIKGPEQNVL 60
Query: 528 KPKAASKMVVSELKEELDAQGLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEE 587
KPKAASKM+VSELKEELDAQGLP DG RNVLYQRVQKARRINRSRGRPLWVPPVEEEEEE
Sbjct: 61 KPKAASKMLVSELKEELDAQGLPIDGNRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEE 120
Query: 588 VDEEVDELISRIKLEEGNTEFWKRRFLGEGLNGRHDKAVEMDESELSDVLDDDVTDVEYV 647
VDEE+D LIS IKLEEGNTEFWKRRFLGEGLNG + + ESE+ +VL DDV +E
Sbjct: 121 VDEELDALISHIKLEEGNTEFWKRRFLGEGLNGDQEMPTDAAESEVPEVL-DDVDAIEDA 179
Query: 648 AK 649
AK
Sbjct: 180 AK 181
>gi|297788459|ref|XP_002862330.1| hypothetical protein ARALYDRAFT_920889 [Arabidopsis lyrata subsp.
lyrata]
gi|297307731|gb|EFH38588.1| hypothetical protein ARALYDRAFT_920889 [Arabidopsis lyrata subsp.
lyrata]
Length = 137
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/116 (82%), Positives = 108/116 (93%)
Query: 760 NRPPQKWSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHS 819
NR P+KWSQEWEVELAI +M KVIELGG PTIGDCAVI+RAA+RAP+PSAFLKILQ THS
Sbjct: 7 NRTPRKWSQEWEVELAIVLMTKVIELGGIPTIGDCAVILRAALRAPMPSAFLKILQTTHS 66
Query: 820 LGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITSRQTGE 875
LGY FGSPLYDEII+LCLD+GELDAA+AIVADMETTGI VPDQTLD+VI++RQ+ E
Sbjct: 67 LGYSFGSPLYDEIITLCLDIGELDAAIAIVADMETTGITVPDQTLDKVISARQSNE 122
>gi|414871208|tpg|DAA49765.1| TPA: hypothetical protein ZEAMMB73_987620, partial [Zea mays]
Length = 94
Score = 169 bits (427), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 86/94 (91%)
Query: 732 MRKRKVFDVSDMYTIADAWGWTWEREITNRPPQKWSQEWEVELAIQIMLKVIELGGTPTI 791
MR+ ++FDVSDMYT ADAWGWTWEREI N+ P+KWSQEWEVELAI+IM KVIELGGTPTI
Sbjct: 1 MREERMFDVSDMYTTADAWGWTWEREIKNKMPRKWSQEWEVELAIKIMHKVIELGGTPTI 60
Query: 792 GDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFG 825
GDCA+I+RAA+RAPLPSAF+ ILQ THSLGY FG
Sbjct: 61 GDCAIILRAAMRAPLPSAFIPILQTTHSLGYKFG 94
>gi|449527217|ref|XP_004170609.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 104
Score = 137 bits (344), Expect = 3e-29, Method: Composition-based stats.
Identities = 64/80 (80%), Positives = 75/80 (93%)
Query: 796 VIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVADMETT 855
+I+RAAI+APLPSAFLKILQ TH LGYVFGSPLYDE+I+LCLDLGELDAA+AIVAD+ETT
Sbjct: 1 MILRAAIKAPLPSAFLKILQTTHGLGYVFGSPLYDEVITLCLDLGELDAAIAIVADLETT 60
Query: 856 GIAVPDQTLDRVITSRQTGE 875
GI V D+TLDRVI++RQT +
Sbjct: 61 GILVHDETLDRVISARQTND 80
>gi|222612959|gb|EEE51091.1| hypothetical protein OsJ_31796 [Oryza sativa Japonica Group]
Length = 357
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 56/77 (72%), Gaps = 4/77 (5%)
Query: 96 IAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
+AAG SPGPRSFHGLV L+G+ EGAM SL+RELS+G+ PL E +AL +F L
Sbjct: 65 VAAGRSPGPRSFHGLV----LSGNAEGAMQSLRRELSSGMHPLRENFVALVHVFAKNDLT 120
Query: 156 TKGLEILAAMEKINYDI 172
TKG+EILAAME+ Y I
Sbjct: 121 TKGMEILAAMERYKYGI 137
>gi|22165103|gb|AAM93720.1| putative stress inducible protein [Oryza sativa Japonica Group]
Length = 380
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 4/72 (5%)
Query: 96 IAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
+AAG SPGPRSFHGLV L+G+ EGAM SL+RELS+G+ PL E +AL +F L
Sbjct: 65 VAAGRSPGPRSFHGLV----LSGNAEGAMQSLRRELSSGMHPLRENFVALVHVFAKNDLT 120
Query: 156 TKGLEILAAMEK 167
TKG+EILAAME+
Sbjct: 121 TKGMEILAAMER 132
>gi|78708787|gb|ABB47762.1| tetratricopeptide repeat, putative, expressed [Oryza sativa
Japonica Group]
Length = 381
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 4/72 (5%)
Query: 96 IAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
+AAG SPGPRSFHGLV L+G+ EGAM SL+RELS+G+ PL E +AL +F L
Sbjct: 65 VAAGRSPGPRSFHGLV----LSGNAEGAMQSLRRELSSGMHPLRENFVALVHVFAKNDLT 120
Query: 156 TKGLEILAAMEK 167
TKG+EILAAME+
Sbjct: 121 TKGMEILAAMER 132
>gi|110289196|gb|ABG66117.1| PsbP family protein, expressed [Oryza sativa Japonica Group]
gi|215701443|dbj|BAG92867.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215769320|dbj|BAH01549.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 523
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 4/72 (5%)
Query: 96 IAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
+AAG SPGPRSFHGLV L+G+ EGAM SL+RELS+G+ PL E +AL +F L
Sbjct: 65 VAAGRSPGPRSFHGLV----LSGNAEGAMQSLRRELSSGMHPLRENFVALVHVFAKNDLT 120
Query: 156 TKGLEILAAMEK 167
TKG+EILAAME+
Sbjct: 121 TKGMEILAAMER 132
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 124 MHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK 167
M SL+RELS+GV PLH +AL +F LAT+ +EILA ME+
Sbjct: 289 MQSLRRELSSGVHPLHGNFVALVHVFAKNDLATRCMEILATMER 332
>gi|115482366|ref|NP_001064776.1| Os10g0461100 [Oryza sativa Japonica Group]
gi|110289195|gb|ABG66116.1| PsbP family protein, expressed [Oryza sativa Japonica Group]
gi|113639385|dbj|BAF26690.1| Os10g0461100 [Oryza sativa Japonica Group]
Length = 537
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 4/72 (5%)
Query: 96 IAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
+AAG SPGPRSFHGLV L+G+ EGAM SL+RELS+G+ PL E +AL +F L
Sbjct: 65 VAAGRSPGPRSFHGLV----LSGNAEGAMQSLRRELSSGMHPLRENFVALVHVFAKNDLT 120
Query: 156 TKGLEILAAMEK 167
TKG+EILAAME+
Sbjct: 121 TKGMEILAAMER 132
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 124 MHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK 167
M SL+RELS+GV PLH +AL +F LAT+ +EILA ME+
Sbjct: 289 MQSLRRELSSGVHPLHGNFVALVHVFAKNDLATRCMEILATMER 332
>gi|110289198|gb|ABG66119.1| PsbP family protein, expressed [Oryza sativa Japonica Group]
Length = 536
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 4/72 (5%)
Query: 96 IAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
+AAG SPGPRSFHGLV L+G+ EGAM SL+RELS+G+ PL E +AL +F L
Sbjct: 65 VAAGRSPGPRSFHGLV----LSGNAEGAMQSLRRELSSGMHPLRENFVALVHVFAKNDLT 120
Query: 156 TKGLEILAAMEK 167
TKG+EILAAME+
Sbjct: 121 TKGMEILAAMER 132
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 124 MHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK 167
M SL+RELS+GV PLH +AL +F LAT+ +EILA ME+
Sbjct: 288 MQSLRRELSSGVHPLHGNFVALVHVFAKNDLATRCMEILATMER 331
>gi|22165110|gb|AAM93727.1| unknown protein [Oryza sativa Japonica Group]
Length = 296
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 4/72 (5%)
Query: 96 IAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
+AAG SPGPRSFHGLV L+G+ EGAM SL+RELS+G+ PL E +AL +F L
Sbjct: 65 VAAGRSPGPRSFHGLV----LSGNAEGAMQSLRRELSSGMHPLRENFVALVHVFAKNDLT 120
Query: 156 TKGLEILAAMEK 167
TKG+EILAAME+
Sbjct: 121 TKGMEILAAMER 132
>gi|125532245|gb|EAY78810.1| hypothetical protein OsI_33913 [Oryza sativa Indica Group]
Length = 159
Score = 90.5 bits (223), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 10/90 (11%)
Query: 96 IAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
+AAG SPGPRSFHGLV L+G+ EGAM SL+RELS+G+ PL +AL +F LA
Sbjct: 65 VAAGRSPGPRSFHGLV----LSGNAEGAMQSLRRELSSGMHPLRGNFVALVHVFAKNDLA 120
Query: 156 TKGLEILAAMEKINYDIRQA------WLIL 179
T+ +EILA ME+ ++IR+ W IL
Sbjct: 121 TRCMEILATMERYKHNIRKVSFYRGIWKIL 150
>gi|110289197|gb|ABG66118.1| PsbP family protein, expressed [Oryza sativa Japonica Group]
Length = 323
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 53/72 (73%), Gaps = 4/72 (5%)
Query: 96 IAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
+AAG SPGPRSFHGLV L+G+ EGAM SL+RELS+GV PLH +AL +F LA
Sbjct: 65 VAAGRSPGPRSFHGLV----LSGNAEGAMQSLRRELSSGVHPLHGNFVALVHVFAKNDLA 120
Query: 156 TKGLEILAAMEK 167
T+ +EILA ME+
Sbjct: 121 TRCMEILATMER 132
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 113/255 (44%), Gaps = 10/255 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M++ GL P +++ L+VA D E M LK G+RP T R+ G G
Sbjct: 218 MVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGK 277
Query: 155 ATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ EI M E D+ + +L++ L LE+A ++F++ G + IY
Sbjct: 278 IDEAYEIFRRMDDEGCGPDL-VTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYI 336
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
++ + GD E +MEA G M F L+ + AFATF+ M
Sbjct: 337 TLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMR-- 394
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ + P+ TYN +I RA R++D +LLG M + +QP TY + ++ F K
Sbjct: 395 KQGILPNLHTYNTLICGLLRA---GRIEDALKLLGTM--ESVGVQPTAYTYNIFIDYFGK 449
Query: 333 YCAVTEAIRHFRALQ 347
+A+ F ++
Sbjct: 450 SGETGKAVETFEKMK 464
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 12/250 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
A++ + + D YD++++ P PR++ L+ G E AM + G +P
Sbjct: 869 AKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNC 928
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIR---QAWLILVEELVRNKYLEDANKVF 196
L +G G ++ M +N IR +++ ILV+ L +++A F
Sbjct: 929 AIFNILINGYGKIGDTETACQLFKRM--VNEGIRPDLKSYTILVDCLCLAGRVDEALYYF 986
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
GL Y+ +I K+ AL + EM G + + +N L+
Sbjct: 987 NELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLA 1046
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G+ E A +E ++ ++PD TYN +I+ Y+ +E+ + V + MMV+
Sbjct: 1047 GMVEQAKRMYEELQLAG--LEPDVFTYNALIRGYSLSENPEHAYTVYK--NMMVDG---C 1099
Query: 317 QPNVKTYALL 326
PN+ TYA L
Sbjct: 1100 NPNIGTYAQL 1109
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 14/252 (5%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P +++ L+ G E A+ L S GV+P T FG G K
Sbjct: 397 GILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKA 456
Query: 159 LEILAAMEKI----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+E M+ N A L + E+ R L +A +F + GL Y++M
Sbjct: 457 VETFEKMKAKGIVPNIVACNASLYSLAEMGR---LREAKTMFNGLRENGLAPDSVTYNMM 513
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
+ K G A+ + EM G N L+ G + A+ F+ M+ +
Sbjct: 514 MKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMK--DM 571
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
+ P TYN ++ + RVQ EL M+E K+ PN ++ L++CF K
Sbjct: 572 KLSPTVVTYNTLLSGLGKE---GRVQKAIELFESMIE--KKCSPNTISFNTLLDCFCKND 626
Query: 335 AVTEAIRHFRAL 346
V A++ F +
Sbjct: 627 EVELALKMFSKM 638
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 125/299 (41%), Gaps = 40/299 (13%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L+R +EDA K+ G++ T Y++ I K+G+ A+E +M+A G
Sbjct: 408 LICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKG 467
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ N L A G A F + E+ + PD+ TYN +++ Y++ +
Sbjct: 468 IVPNIVACNASLYSLAEMGRLREAKTMFNGLR--ENGLAPDSVTYNMMMKCYSKV---GQ 522
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE-GGTKVLH 357
V + LL M+ + +P+V L++ K V EA + F +++ + T V +
Sbjct: 523 VDEAVNLLSEMIRNG--CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTY 580
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP 417
N L L +EGR+ + +E E+M + + P + + TL+ + +
Sbjct: 581 NT---------LLSGLGKEGRVQKAIELFESMIE--KKCSPNTI----SFNTLLDCFCK- 624
Query: 418 LQEEAELGYEI-----------DYIARYISEGGLTGERK----RWVPRRGKTPLDPDAV 461
+E EL ++ D + GL E K W + K + PD V
Sbjct: 625 -NDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHV 682
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM- 269
Y+++I+ K+ + AL+ Y++ ++ T + L+ A G E A FE M
Sbjct: 861 YNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMS 920
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+YG KP+ +N +I Y + + +L MV + R P++K+Y +LV+C
Sbjct: 921 DYG---CKPNCAIFNILINGYGKIGD---TETACQLFKRMVNEGIR--PDLKSYTILVDC 972
Query: 330 FTKYCAVTEAIRHFRALQN 348
V EA+ +F L++
Sbjct: 973 LCLAGRVDEALYYFNELKS 991
Score = 46.2 bits (108), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 9/177 (5%)
Query: 175 AWLI-LVEELVRNKYLEDANKVFLRGAKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
++LI LV L ++K A ++F + K G+ T Y+ +I E + A ++
Sbjct: 753 SFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFK 812
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+M+ G F FN LL+ G F ++ M KPD TYN VI + +
Sbjct: 813 DMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMI--SRRCKPDAITYNIVISSLAK 870
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+ + D+ D ++ D + P +TY L++ K + EA+R F + +Y
Sbjct: 871 SNNLDKALDF--FYDLVSSDFR---PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDY 922
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 10/255 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M++ GL P +++ L+VA D E M LK G+RP T R+ G G
Sbjct: 218 MVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGK 277
Query: 155 ATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ EI M E D+ + +L++ L LE+A ++F++ G + IY
Sbjct: 278 IDEAYEIFRRMDDEGCGPDL-VTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYI 336
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
++ + GD E +MEA G M F L+ + AFATF+ M
Sbjct: 337 TLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMR-- 394
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ + P+ TYN +I RA R++D +LL M + +QP TY ++ F K
Sbjct: 395 KQGILPNLHTYNTLICGLLRA---GRIEDALKLLDTM--ESVGVQPTAYTYITFIDYFGK 449
Query: 333 YCAVTEAIRHFRALQ 347
+A+ F ++
Sbjct: 450 SGETGKAVETFEKMK 464
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 12/250 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
A++ + + D YD++++ P PR++ L+ G E AM + G +P
Sbjct: 869 AKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNC 928
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIR---QAWLILVEELVRNKYLEDANKVF 196
L +G G ++ M +N IR +++ ILV+ L +++A F
Sbjct: 929 AIFNILINGYGKIGDTETACQLFKRM--VNEGIRPDLKSYTILVDCLCLAGRVDEALYYF 986
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
GL Y+ +I K+ AL + EM G + + +N L+
Sbjct: 987 NELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLA 1046
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G+ E A +E ++ ++PD TYN +I+ Y+ +E+ + V + MMV+
Sbjct: 1047 GMVEQAKRMYEELQLAG--LEPDVFTYNALIRGYSLSENPEHAYTVYK--NMMVDG---C 1099
Query: 317 QPNVKTYALL 326
PN+ TYA L
Sbjct: 1100 NPNIGTYAQL 1109
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 14/252 (5%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P +++ L+ G E A+ L S GV+P T I FG G K
Sbjct: 397 GILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKA 456
Query: 159 LEILAAMEKI----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+E M+ N A L + E+ R L +A +F + GL Y++M
Sbjct: 457 VETFEKMKAKGIVPNIVACNASLYSLAEMGR---LREAKTMFNGLRENGLAPDSVTYNMM 513
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
+ K G A+ + EM G N L+ G + A+ F+ M+ +
Sbjct: 514 MKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMK--DM 571
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
+ P TYN ++ + RVQ EL M+ K+ PN ++ L++CF K
Sbjct: 572 KLSPTVVTYNTLLSGLGKE---GRVQKAIELFESMIX--KKCSPNTISFNTLLDCFCKND 626
Query: 335 AVTEAIRHFRAL 346
V A++ F +
Sbjct: 627 EVELALKMFSKM 638
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM- 269
Y+++I+ K+ + AL+ Y++ ++ T + L+ A G E A FE M
Sbjct: 861 YNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMS 920
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+YG KP+ +N +I Y + + +L MV + R P++K+Y +LV+C
Sbjct: 921 DYG---CKPNCAIFNILINGYGKIGD---TETACQLFKRMVNEGIR--PDLKSYTILVDC 972
Query: 330 FTKYCAVTEAIRHFRALQN 348
V EA+ +F L++
Sbjct: 973 LCLAGRVDEALYYFNELKS 991
Score = 46.6 bits (109), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 9/177 (5%)
Query: 175 AWLI-LVEELVRNKYLEDANKVFLRGAKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
++LI LV L ++K A ++F + K G+ T Y+ +I E + A ++
Sbjct: 753 SFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFK 812
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+M+ G F FN LL+ G F ++ M KPD TYN VI + +
Sbjct: 813 DMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMI--SRRCKPDAITYNIVISSLAK 870
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+ + D+ D ++ D + P +TY L++ K + EA+R F + +Y
Sbjct: 871 SNNLDKALDF--FYDLVSSDFR---PTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDY 922
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 10/244 (4%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G P ++ L+ A G E A + + G +P I L F G
Sbjct: 292 GCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTF 351
Query: 159 LEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
E + ME Y D+ + ILV+ L + + ++A F K G+ Y+ +I
Sbjct: 352 KEFWSQMEADGYMPDV-VTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLIC 410
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
+AG +AL++ ME+ G T + + + G A TFE M+ +
Sbjct: 411 GLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMK--AKGI 468
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
P+ C Y+ AE R+++ + + E+ L P+ TY ++++C++K V
Sbjct: 469 VPNIVA--CNASLYSLAEM-GRLREAKTMFNGLRENG--LAPDSVTYNMMMKCYSKVGQV 523
Query: 337 TEAI 340
EA+
Sbjct: 524 DEAV 527
>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
Length = 886
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/352 (21%), Positives = 139/352 (39%), Gaps = 34/352 (9%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ + H ++ + R +++ +M G+ +H ++ YT+ D + + +R
Sbjct: 357 IIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFER 416
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNK 187
G +P + L L+ G K + I ME I ++ + + +L+ +
Sbjct: 417 LKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHN-NKTYSMLINGFIHLH 475
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+A +F K GL+ IY+L++ CK G+ A+ I M+ + F
Sbjct: 476 DFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFR 535
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ A G + AF T + M P TYN +I R ++ V + +
Sbjct: 536 PIIEGFAVAGDMKRAFDTLDLMR--RSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMS 593
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
+ + PN TY +++ + + +A +F ++ E G K L
Sbjct: 594 I-----AGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIK--ESGLK-----------LD 635
Query: 368 LY-----LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
+Y LRA C+ GR+ L M+ Q +P I Y L+ W
Sbjct: 636 VYIYETLLRACCKSGRMQSALAVTREMS--FQKIPRNTFI----YNILIDGW 681
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 107/250 (42%), Gaps = 8/250 (3%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
+ P R+F ++ + + GD + A +L +G P T AL K K +
Sbjct: 527 MQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAV 586
Query: 160 EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L M + + I++ + + A + F + + GL+ IY+ ++
Sbjct: 587 SVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 646
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
CK+G +AL + EM TF +N L+ A G A + M+ ED + P
Sbjct: 647 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMK--EDGIPP 704
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
+ T+ I A +A R ++V + + + L+PNVKT+ L++ + +
Sbjct: 705 NIHTFTSYINACCKAGDMQRAENVIQEMADV-----GLKPNVKTFTTLIKGWARVSLPDR 759
Query: 339 AIRHFRALQN 348
A++ F +++
Sbjct: 760 ALKCFEEMKS 769
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 122/311 (39%), Gaps = 46/311 (14%)
Query: 59 SVVSAAE---QGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYT 115
+VVSA E + R F ++ +A+ D +M A G+ P F LV AY
Sbjct: 238 AVVSAFERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYA 297
Query: 116 LNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG-------------LEIL 162
+ GD GA+ ++ S G+ T L +G A L +
Sbjct: 298 VAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGI 357
Query: 163 AAMEKINYDIRQAWLILVEELVRN--------------------KYLEDANK---VFLRG 199
I+ + + EELVR ++D K VF R
Sbjct: 358 IYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERL 417
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
+ G + T Y +I K G A+ I+ EME+ G ++ L++
Sbjct: 418 KECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDF 477
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
AF+ FE+M + ++PD YN +++A+ + + DR + E + +R+QP+
Sbjct: 478 ANAFSIFEDMI--KSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERM-----QKERMQPS 530
Query: 320 VKTYALLVECF 330
+T+ ++E F
Sbjct: 531 NRTFRPIIEGF 541
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 102/278 (36%), Gaps = 35/278 (12%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P R F +VV Y GD A + + + G+ P +L + G L
Sbjct: 249 PSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSC 308
Query: 162 LAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE-IYDLMIAEDC 219
+ M+ ++ + IL+ + + A+ +F + AK L + IY +I C
Sbjct: 309 VEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLF-KEAKTKLDNLNGIIYSNIIHAHC 367
Query: 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 279
++G+ A E+ EME G A ++ ++ + FE ++ E KP
Sbjct: 368 QSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLK--ECGFKPT 425
Query: 280 TETYNCVIQAYTRA-----------------------------ESYDRVQDVAELLGMMV 310
+Y C+I Y + + + D A +
Sbjct: 426 IISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFE 485
Query: 311 EDHKR-LQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ K LQP+ Y LLVE F K + AIR F +Q
Sbjct: 486 DMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQ 523
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 11/214 (5%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVR---P 137
R + V+ M AG++P ++ ++ Y +GD A + +G++
Sbjct: 578 RKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVY 637
Query: 138 LHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKV 195
++ETL+ R G L + M +KI + + IL++ R + +A +
Sbjct: 638 IYETLL---RACCKSGRMQSALAVTREMSFQKIPRNTF-IYNILIDGWARRGDVWEAADL 693
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+ + G+ + I CKAGD A + EM G F L+ A
Sbjct: 694 LKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAR 753
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
+P+ A FE M+ +KPD Y+C++ +
Sbjct: 754 VSLPDRALKCFEEMKSAG--LKPDEAAYHCLVTS 785
>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
Length = 888
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/350 (21%), Positives = 139/350 (39%), Gaps = 30/350 (8%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ + H ++ + R +++ +M G+ +H ++ YT+ D + + +R
Sbjct: 359 IIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFER 418
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNK 187
G RP + L L+ G K L + ME I ++ + + +L+ +
Sbjct: 419 LKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHN-NKTYSMLINGFIHLH 477
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+A +F K GL+ IY+L++ CK G+ A+ I M+ + F
Sbjct: 478 DFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFR 537
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ A G + A T + M P TYN +I R +R V + +
Sbjct: 538 PIIEGFAVAGDMKRALDTLDLMR--RSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMS 595
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
+ + PN TY +++ + + +A +F ++ E G K+ +
Sbjct: 596 I-----AGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIK--ESGLKL---------DVY 639
Query: 368 LY---LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
+Y LRA C+ GR+ L M+ Q +P I Y L+ W
Sbjct: 640 IYETLLRACCKSGRMQSALAVTREMS--FQKIPRNTFI----YNILIDGW 683
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 108/250 (43%), Gaps = 8/250 (3%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
+ P R+F ++ + + GD + A+ +L +G P T AL K + +
Sbjct: 529 MQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAV 588
Query: 160 EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L M + + I++ + + A + F + + GL+ IY+ ++
Sbjct: 589 SVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 648
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
CK+G +AL + EM TF +N L+ A G A + M+ ED + P
Sbjct: 649 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMK--EDGIPP 706
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
+ T+ I A +A R ++V + + + L+PNVKT+ L++ + K
Sbjct: 707 NIHTFTSYINACCKAGDMQRAENVIQEMADV-----GLKPNVKTFTTLIKGWAKVSLPDR 761
Query: 339 AIRHFRALQN 348
A++ F +++
Sbjct: 762 ALKCFEEMKS 771
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 11/214 (5%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVR---P 137
R R V+ M AG++P ++ ++ Y +GD A + +G++
Sbjct: 580 RKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVY 639
Query: 138 LHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKV 195
++ETL+ R G L + M +KI + + IL++ R + +A +
Sbjct: 640 IYETLL---RACCKSGRMQSALAVTREMSFQKIPRNT-FIYNILIDGWARRGDVWEAADL 695
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+ + G+ + I CKAGD A + EM G F L+ A
Sbjct: 696 MKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAK 755
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
+P+ A FE M+ +KPD Y+C++ +
Sbjct: 756 VSLPDRALKCFEEMKSAG--LKPDEAAYHCLVTS 787
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 118/306 (38%), Gaps = 49/306 (16%)
Query: 62 SAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHE 121
S E GL +++ +A+ D +M A G+ P F LV AY + D
Sbjct: 252 SRREFGLMVVY------YAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMR 305
Query: 122 GAMHSLKRELSAGVR---PLHETLIA----------LARLFGSKGLATKGLEILAAMEKI 168
GA+ ++ S G+ + LIA +LF L + I
Sbjct: 306 GALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNII 365
Query: 169 NYDIRQAWLILVEELVRN--------------------KYLEDANK---VFLRGAKGGLR 205
+ + + EELVR +D K VF R + G R
Sbjct: 366 HAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFR 425
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+ Y +I K G AL ++ EME+ G ++ L++ AF+
Sbjct: 426 PSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSI 485
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
FE+M + ++PD YN +++A+ + + DR + E + +R+QP+ +T+
Sbjct: 486 FEDMI--KSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERM-----KKERMQPSNRTFRP 538
Query: 326 LVECFT 331
++E F
Sbjct: 539 IIEGFA 544
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 118/298 (39%), Gaps = 21/298 (7%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P R F +VV Y GD A + + + G+ P +L + L
Sbjct: 251 PSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSC 310
Query: 162 LAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE-IYDLMIAEDC 219
+ M+ ++ + IL+ + E A+K+F + AK L + IY +I C
Sbjct: 311 VEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLF-KEAKTKLDNLNGIIYSNIIHAHC 369
Query: 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 279
++G+ A E+ EME G A ++ ++ + FE ++ E +P
Sbjct: 370 QSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLK--ECGFRPS 427
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+Y C+I Y + + V++ + E H ++ N KTY++L+ F A
Sbjct: 428 IISYGCLINLYVKIGKVPKALAVSKEM----ESHG-IKHNNKTYSMLINGFIHLHDFANA 482
Query: 340 IRHFR-ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN-QP 395
F +++ + ++N L + A C+ G + + E M K+ QP
Sbjct: 483 FSIFEDMIKSGLQPDRAIYN---------LLVEAFCKMGNMDRAIRIFERMKKERMQP 531
>gi|307106042|gb|EFN54289.1| hypothetical protein CHLNCDRAFT_135872 [Chlorella variabilis]
Length = 437
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/365 (23%), Positives = 151/365 (41%), Gaps = 72/365 (19%)
Query: 69 RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
R +F + L Q A + + +M AG PGPR++H LV +Y + GA+ S++
Sbjct: 55 RFLFHQSLSQAALAGNWAAAEAAVEEMAQAGYVPGPRAYHALVFSYVKARNASGALGSIR 114
Query: 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY 188
+ AG+ PL ET A+ + G + A+ + D ++W LV L+R
Sbjct: 115 QCWDAGITPLPETYAAVVAAHVAVGDLDTAEAVCASNRRAGVDCSKSWQQLVAALLRAGE 174
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
LE AN + +G G++ ++ +Y+ +I + C + + +E A NH
Sbjct: 175 LEKANDMLSQGEAEGMQPSEAVYEALIQQMC----------LEHNLEGA--------TNH 216
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT-RAESYDRVQDVAELLG 307
L + + E ++P Y VI + R ++ Q+ LL
Sbjct: 217 LQAMK-------------------ERGLQPSLAHYEPVISEHAIRGDT----QEAQRLLI 253
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
++ + L V T A+ C+T + A A + + YE K +
Sbjct: 254 DLLSSNTTLP--VGTLAV---CYTVFEAQLRASQTVAEVTEYERRMKQM----------- 297
Query: 368 LYLRALCREGRI-IELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI--------EPL 418
L R + EL E L AM+++ + +PP AM + T++ +W+ +PL
Sbjct: 298 -----LLRHANLPAELYEVLSAMSREERAIPPVAMHTDQHGCTVLGAWVRFRLGQTDDPL 352
Query: 419 QEEAE 423
EA+
Sbjct: 353 PGEAQ 357
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 124/291 (42%), Gaps = 29/291 (9%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIAL 145
N V+ D + G P ++ L+ + +GD + AM K L G+RP L+ TLI
Sbjct: 315 NRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLI-- 372
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWL-------ILVEELVRNKYLEDANKVFLR 198
KGL+ +GL IL A++ +N L +++ L + + DA+ +
Sbjct: 373 ------KGLSQQGL-ILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDD 425
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G Y+ +I CK +A E+ M + G +N LL+ G
Sbjct: 426 AIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGK 485
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E F+ ME E P+ TYN ++ + +A+ +V + +LLG M K L+P
Sbjct: 486 SEEVMEIFKAME--EKGCTPNIITYNIIVDSLCKAK---KVNEAVDLLGEM--KSKGLKP 538
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 369
+V ++ L FT +C + + ++ + E V H + +S +
Sbjct: 539 DVVSFGTL---FTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAF 586
>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
Length = 900
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 74/352 (21%), Positives = 137/352 (38%), Gaps = 34/352 (9%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ + H ++ + R +++ +M G+ +H ++ YT+ + + +R
Sbjct: 369 IIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFER 428
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNK 187
G +P + L L+ G K L I ME I ++ + + +L+ +
Sbjct: 429 LKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHN-NKTYSMLINGFIHLH 487
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+A +F + GL+ IY+L+I CK G+ A+ I +M+ + F
Sbjct: 488 DFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFR 547
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ A G + A T + M P TYN +I R R V + +
Sbjct: 548 PIIEGYAVAGDMKSALDTLDLMR--RSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS 605
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
+ + PN TY +++ + + +A +F ++ E G K L
Sbjct: 606 I-----AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIK--ESGLK-----------LD 647
Query: 368 LY-----LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
+Y LRA C+ GR+ L M+ Q +P I Y L+ W
Sbjct: 648 VYIYETLLRACCKSGRMQSALAVTREMS--FQKIPRNTFI----YNILIDGW 693
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 8/249 (3%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
+ P R+F ++ Y + GD + A+ +L +G P T AL K + +
Sbjct: 539 MQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAV 598
Query: 160 EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L M + + I++ + + A + F + + GL+ IY+ ++
Sbjct: 599 SVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 658
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
CK+G +AL + EM TF +N L+ A G A + M+ ED + P
Sbjct: 659 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK--EDGVPP 716
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
+ TY I A +A R + V E MV+ L+PNVKTY L++ + +
Sbjct: 717 NIHTYTSYINACCKAGDMQRAEKVIE---EMVD--VGLKPNVKTYTTLIKGWARVSLPDR 771
Query: 339 AIRHFRALQ 347
A++ F ++
Sbjct: 772 ALKCFEEMK 780
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 119/304 (39%), Gaps = 22/304 (7%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P R F ++V Y GD A + + + G+ P +L + L
Sbjct: 261 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSC 320
Query: 162 LAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE-IYDLMIAEDC 219
+ M+ ++ + IL+ + + A+ +F + AK L + + IY +I C
Sbjct: 321 VEEMKSEGLELTIVTYSILISGFAKINDSQSADNLF-KEAKTKLSSLNGIIYSNIIHAHC 379
Query: 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 279
++G+ A E+ EME G A ++ ++ FE ++ E KP
Sbjct: 380 QSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK--ECGFKPS 437
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVECFTKYCAVTE 338
+Y C++ Y ++ VA+ L + E + ++ N KTY++L+ F
Sbjct: 438 IISYGCLLNLYV------KIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFAN 491
Query: 339 AIRHF-RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
A F L++ + ++N L + A C+ G + + LE M K+
Sbjct: 492 AFAIFEEMLRSGLQPDRAIYN---------LLIEAFCKMGNMDRAICILEKMQKERMQPS 542
Query: 398 PRAM 401
RA
Sbjct: 543 NRAF 546
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 11/214 (5%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVR---P 137
R R V+ M AG++P ++ ++ Y +GD A + +G++
Sbjct: 590 RKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVY 649
Query: 138 LHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKV 195
++ETL+ R G L + M +KI + + IL++ R + +A +
Sbjct: 650 IYETLL---RACCKSGRMQSALAVTREMSFQKIPRNT-FIYNILIDGWARRGDVWEAEDL 705
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+ + G+ Y I CKAGD A ++ EM G + L+ A
Sbjct: 706 MKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 765
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
+P+ A FE M+ +KPD +Y+C++ +
Sbjct: 766 VSLPDRALKCFEEMKLAG--LKPDEASYHCLVTS 797
>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
Length = 879
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/352 (21%), Positives = 137/352 (38%), Gaps = 34/352 (9%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ + H ++ + R +++ +M G+ +H ++ YT+ + + +R
Sbjct: 348 IIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFER 407
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNK 187
G +P + L L+ G K L I ME I ++ + + +L+ +
Sbjct: 408 LKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHN-NKTYSMLINGFIHLH 466
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+A +F + GL+ IY+L+I CK G+ A+ I +M+ + F
Sbjct: 467 DFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFR 526
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ A G + A T + M P TYN +I R R V + +
Sbjct: 527 PIIEGYAVAGDMKSALDTLDLMR--RSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS 584
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
+ + PN TY +++ + + +A +F ++ E G K L
Sbjct: 585 I-----AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIK--ESGLK-----------LD 626
Query: 368 LY-----LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
+Y LRA C+ GR+ L M+ Q +P I Y L+ W
Sbjct: 627 VYIYETLLRACCKSGRMQSALAVTREMS--FQKIPRNTFI----YNILIDGW 672
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 8/249 (3%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
+ P R+F ++ Y + GD + A+ +L +G P T AL K + +
Sbjct: 518 MQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAV 577
Query: 160 EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L M + + I++ + + A + F + + GL+ IY+ ++
Sbjct: 578 SVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 637
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
CK+G +AL + EM TF +N L+ A G A + M+ ED + P
Sbjct: 638 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK--EDGVPP 695
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
+ TY I A +A R + V E MV+ L+PNVKTY L++ + +
Sbjct: 696 NIHTYTSYINACCKAGDMQRAEKVIE---EMVD--VGLKPNVKTYTTLIKGWARVSLPDR 750
Query: 339 AIRHFRALQ 347
A++ F ++
Sbjct: 751 ALKCFEEMK 759
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 119/304 (39%), Gaps = 22/304 (7%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P R F ++V Y GD A + + + G+ P +L + L
Sbjct: 240 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSC 299
Query: 162 LAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE-IYDLMIAEDC 219
+ M+ ++ + IL+ + + A+ +F + AK L + + IY +I C
Sbjct: 300 VEEMKSEGLELTIVTYSILISGFAKINDSQSADNLF-KEAKTKLSSLNGIIYSNIIHAHC 358
Query: 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 279
++G+ A E+ EME G A ++ ++ FE ++ E KP
Sbjct: 359 QSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK--ECGFKPS 416
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVECFTKYCAVTE 338
+Y C++ Y ++ VA+ L + E + ++ N KTY++L+ F
Sbjct: 417 IISYGCLLNLYV------KIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFAN 470
Query: 339 AIRHF-RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
A F L++ + ++N L + A C+ G + + LE M K+
Sbjct: 471 AFAIFEEMLRSGLQPDRAIYN---------LLIEAFCKMGNMDRAICILEKMQKERMQPS 521
Query: 398 PRAM 401
RA
Sbjct: 522 NRAF 525
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 11/214 (5%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVR---P 137
R R V+ M AG++P ++ ++ Y +GD A + +G++
Sbjct: 569 RKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVY 628
Query: 138 LHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKV 195
++ETL+ R G L + M +KI + + IL++ R + +A +
Sbjct: 629 IYETLL---RACCKSGRMQSALAVTREMSFQKIPRNT-FIYNILIDGWARRGDVWEAEDL 684
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+ + G+ Y I CKAGD A ++ EM G + L+ A
Sbjct: 685 MKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 744
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
+P+ A FE M+ +KPD +Y+C++ +
Sbjct: 745 VSLPDRALKCFEEMKLAG--LKPDEASYHCLVTS 776
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 123/312 (39%), Gaps = 46/312 (14%)
Query: 59 SVVSAAE---QGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYT 115
+VVSA E + R F ++ +A+ D +M A G+ P F LV AY
Sbjct: 229 AVVSAFERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYA 288
Query: 116 LNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG-------SKGLATKGLEILAAMEKI 168
+ D GA+ ++ S G+ T L F + L + L+++ I
Sbjct: 289 VARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGI 348
Query: 169 NYD------IRQAWLILVEELVRN--------------------KYLEDANK---VFLRG 199
Y + + EELVR +++ NK VF R
Sbjct: 349 IYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERL 408
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
+ G + + Y ++ K G + AL I+ EME+ G ++ L++
Sbjct: 409 KECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDF 468
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
AFA FE M ++PD YN +I+A+ + + DR + E + +R+QP+
Sbjct: 469 ANAFAIFEEML--RSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKM-----QKERMQPS 521
Query: 320 VKTYALLVECFT 331
+ + ++E +
Sbjct: 522 NRAFRPIIEGYA 533
>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
Length = 901
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/352 (21%), Positives = 137/352 (38%), Gaps = 34/352 (9%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ + H ++ + R +++ +M G+ +H ++ YT+ + + +R
Sbjct: 370 IIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFER 429
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNK 187
G +P + L L+ G K L I ME I ++ + + +L+ +
Sbjct: 430 LKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHN-NKTYSMLINGFIHLH 488
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+A +F + GL+ IY+L+I CK G+ A+ I +M+ + F
Sbjct: 489 DFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFR 548
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ A G + A T + M P TYN +I R R V + +
Sbjct: 549 PIIEGYAVAGDMKSALDTLDLMR--RSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS 606
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
+ + PN TY +++ + + +A +F ++ E G K L
Sbjct: 607 I-----AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIK--ESGLK-----------LD 648
Query: 368 LY-----LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
+Y LRA C+ GR+ L M+ Q +P I Y L+ W
Sbjct: 649 VYIYETLLRACCKSGRMQSALAVTREMS--FQKIPRNTFI----YNILIDGW 694
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 8/249 (3%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
+ P R+F ++ Y + GD + A+ +L +G P T AL K + +
Sbjct: 540 MQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAV 599
Query: 160 EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L M + + I++ + + A + F + + GL+ IY+ ++
Sbjct: 600 SVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 659
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
CK+G +AL + EM TF +N L+ A G A + M+ ED + P
Sbjct: 660 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK--EDGVPP 717
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
+ TY I A +A R + V E MV+ L+PNVKTY L++ + +
Sbjct: 718 NIHTYTSYINACCKAGDMQRAEKVIE---EMVD--VGLKPNVKTYTTLIKGWARVSLPDR 772
Query: 339 AIRHFRALQ 347
A++ F ++
Sbjct: 773 ALKCFEEMK 781
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 119/304 (39%), Gaps = 22/304 (7%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P R F ++V Y GD A + + + G+ P +L + L
Sbjct: 262 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSC 321
Query: 162 LAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE-IYDLMIAEDC 219
+ M+ ++ + IL+ + + A+ +F + AK L + + IY +I C
Sbjct: 322 VEEMKSEGLELTIVTYSILISGFAKINDSQSADNLF-KEAKTKLSSLNGIIYSNIIHAHC 380
Query: 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 279
++G+ A E+ EME G A ++ ++ FE ++ E KP
Sbjct: 381 QSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLK--ECGFKPS 438
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVECFTKYCAVTE 338
+Y C++ Y ++ VA+ L + E + ++ N KTY++L+ F
Sbjct: 439 IISYGCLLNLYV------KIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFAN 492
Query: 339 AIRHF-RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
A F L++ + ++N L + A C+ G + + LE M K+
Sbjct: 493 AFAIFEEMLRSGLQPDRAIYN---------LLIEAFCKMGNMDRAICILEKMQKERMQPS 543
Query: 398 PRAM 401
RA
Sbjct: 544 NRAF 547
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 11/214 (5%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVR---P 137
R R V+ M AG++P ++ ++ Y +GD A + +G++
Sbjct: 591 RKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVY 650
Query: 138 LHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKV 195
++ETL+ R G L + M +KI + + IL++ R + +A +
Sbjct: 651 IYETLL---RACCKSGRMQSALAVTREMSFQKIPRNT-FIYNILIDGWARRGDVWEAEDL 706
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+ + G+ Y I CKAGD A ++ EM G + L+ A
Sbjct: 707 MKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 766
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
+P+ A FE M+ +KPD +Y+C++ +
Sbjct: 767 VSLPDRALKCFEEMKLAG--LKPDEASYHCLVTS 798
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 119/306 (38%), Gaps = 49/306 (16%)
Query: 62 SAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHE 121
S E GL +++ +A+ D +M A G+ P F LV AY + D
Sbjct: 263 SRREFGLMIVY------YAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMR 316
Query: 122 GAMHSLKRELSAGVRPLHETLIALARLFG-------SKGLATKGLEILAAMEKINYD--- 171
GA+ ++ S G+ T L F + L + L+++ I Y
Sbjct: 317 GALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNII 376
Query: 172 ---IRQAWLILVEELVRN--------------------KYLEDANK---VFLRGAKGGLR 205
+ + EELVR +++ NK VF R + G +
Sbjct: 377 HAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFK 436
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+ Y ++ K G + AL I+ EME+ G ++ L++ AFA
Sbjct: 437 PSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAI 496
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
FE M ++PD YN +I+A+ + + DR + E + +R+QP+ + +
Sbjct: 497 FEEML--RSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKM-----QKERMQPSNRAFRP 549
Query: 326 LVECFT 331
++E +
Sbjct: 550 IIEGYA 555
>gi|110289199|gb|AAP54144.2| PsbP family protein, expressed [Oryza sativa Japonica Group]
Length = 352
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 23/125 (18%)
Query: 43 QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSP 102
+RR++ G + +V E+G RL ++++ + AR V +YDM+AA LSP
Sbjct: 44 ERRRRSEGGA--GDRSAVAGVVEKGPRLAYLQQYEERARAAGFTGVAGTVYDMVAAMLSP 101
Query: 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEIL 162
M SL+RELS+GV PLH +AL +F LAT+ +EIL
Sbjct: 102 ---------------------MQSLRRELSSGVHPLHGNFVALVHVFAKNDLATRCMEIL 140
Query: 163 AAMEK 167
A ME+
Sbjct: 141 ATMER 145
>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 913
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/350 (20%), Positives = 140/350 (40%), Gaps = 30/350 (8%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ + H ++ + R +++++M G+ ++H ++ YT+ D + + +R
Sbjct: 383 IIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFER 442
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNK 187
P + L L+ G K + I ME I ++ + + +L+ +
Sbjct: 443 LKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHN-NKTYSMLISGFIHLH 501
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+A ++F K GL+ IY+L+I CK G+ A+ I +M+ + F
Sbjct: 502 DFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFR 561
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ A G + A + M P TYN +I R +R V +
Sbjct: 562 PIIEGFAVAGDMKRALDILDLMR--RSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMS 619
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
+ + PN TY +++ + + +A +F ++ EGG K+ +
Sbjct: 620 I-----AGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIK--EGGLKL---------DVY 663
Query: 368 LY---LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
+Y LRA C+ GR+ L M+ +Q + + Y L+ W
Sbjct: 664 IYETLLRACCKSGRMQSALAVTREMS--SQKIARNTFV----YNILIDGW 707
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 8/249 (3%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
+ P R+F ++ + + GD + A+ L +G P T AL K + +
Sbjct: 553 MQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAV 612
Query: 160 EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L M + + I++ + A + F + +GGL+ IY+ ++
Sbjct: 613 SVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRAC 672
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
CK+G +AL + EM + TF +N L+ A G A + M+ ED + P
Sbjct: 673 CKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMK--EDGVPP 730
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
+ TY I A +A R Q V + + + L+PN+KTY L++ + +
Sbjct: 731 NIHTYTSYINACCKAGDMQRAQTVIDEMSDV-----GLKPNLKTYTTLIKGWARASLPDR 785
Query: 339 AIRHFRALQ 347
A++ F ++
Sbjct: 786 ALKCFEEMK 794
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 120/305 (39%), Gaps = 24/305 (7%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P R F ++V Y GD A + + + G+ P +L + L
Sbjct: 275 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSC 334
Query: 162 LAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE-IYDLMIAED 218
M E I I + IL+ + + A+ +F + AK L + IY +I
Sbjct: 335 TEEMKAEGIELTI-VTYSILISGFGKINDTQSADNLF-KEAKTNLGDLNGIIYSNIIHAH 392
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
C++G+ A E+ +EME G A ++ ++ + FE ++ E P
Sbjct: 393 CQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLK--ECCFTP 450
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVECFTKYCAVT 337
+Y C+I Y ++ VA+ + + E + ++ N KTY++L+ F T
Sbjct: 451 SIISYGCLINLYV------KIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFT 504
Query: 338 EAIRHF-RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPV 396
A R F L++ + ++N L + A C+ G + + LE M K+
Sbjct: 505 NAFRIFEEMLKSGLQPDRAIYN---------LLIEAFCKMGNMDRAIRILEKMQKERMQP 555
Query: 397 PPRAM 401
RA
Sbjct: 556 SNRAF 560
>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Brachypodium distachyon]
Length = 904
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 8/249 (3%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
+ P R+F ++ + + GD + A++ L +G P T AL K + +
Sbjct: 545 MQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAV 604
Query: 160 EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L M + + I++ N + A + F + +GGL+ IY+ ++
Sbjct: 605 SVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRAC 664
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
CK+G +AL + EM TF +N L+ A G A + M+ ED + P
Sbjct: 665 CKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMK--EDGVPP 722
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
+ TY I A +A R Q V E + + L+PN+KTY L++ + K
Sbjct: 723 NIHTYTSYINACCKAGDMQRAQKVIEEMADV-----GLKPNLKTYTTLIKGWAKASLPDR 777
Query: 339 AIRHFRALQ 347
A++ F ++
Sbjct: 778 ALKSFEEMK 786
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/351 (20%), Positives = 139/351 (39%), Gaps = 32/351 (9%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ + H ++ + R +++ +M G+ ++H ++ YT+ D + + +R
Sbjct: 375 IIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFER 434
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR---QAWLILVEELVRN 186
P + L L+ G TK + I ME +Y I+ + + +L+ +
Sbjct: 435 LKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEME--SYGIKHNNKTYSMLISGFIHL 492
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+A +F K GL+ IY+L+I CK G+ A+ I +M+ + F
Sbjct: 493 HDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAF 552
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
++ A G + A + M P TYN +I + +R V +
Sbjct: 553 RPIIEGFAVAGDMKRALNILDLMR--RSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKM 610
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL 366
+ + PN TY +++ + + +A +F ++ EGG K+ +
Sbjct: 611 SI-----AGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIK--EGGLKL---------DV 654
Query: 367 SLY---LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
+Y LRA C+ GR+ L M+ Q + + Y L+ W
Sbjct: 655 YIYETLLRACCKSGRMQSALAVTREMS--TQKIARNTFV----YNILIDGW 699
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 62/307 (20%), Positives = 121/307 (39%), Gaps = 28/307 (9%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P R F ++V Y GD A + + + G+ P L + +A +
Sbjct: 267 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEP---NAFVFTSLVHAYAVARDMRGV 323
Query: 162 LAAMEKINYDIRQ----AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE-IYDLMIA 216
L+ +E++ + + + I++ + + A+ +F + AK L + IY +I
Sbjct: 324 LSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLF-KEAKAKLGDLNGIIYSNIIH 382
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
C++G+ A E+ EME G A ++ ++ + FE ++ E
Sbjct: 383 AHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLK--ECCF 440
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVECFTKYCA 335
P +Y C+I Y ++ V + + + E + ++ N KTY++L+ F
Sbjct: 441 TPSIISYGCLINLYI------KIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHD 494
Query: 336 VTEAIRHF-RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 394
A F L++ + ++N L + A C+ G + + LE M K+
Sbjct: 495 FANAFSIFEEMLKSGLQPDRAIYN---------LLIEAFCKMGNMDRAIRILEKMQKERM 545
Query: 395 PVPPRAM 401
RA
Sbjct: 546 QPSNRAF 552
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 150/349 (42%), Gaps = 30/349 (8%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R + ++ DM G+ P ++ + Y+ +G+ + A K LS+G+ P +
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNN 591
Query: 140 ETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFL 197
L + G + L M + + DIR A+ ++ L +N ++A VFL
Sbjct: 592 VIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIR-AYSAIIHSLSKNGKTKEAMGVFL 650
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ K G+ +Y+ +I+ CK GD A ++ EM G +N L++ C
Sbjct: 651 KFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLIN--GLCK 708
Query: 258 IPEVAFA--TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
+ EV A F+ +E E + PD TY+ +I Y ++ + + +L M+ K
Sbjct: 709 LGEVTKARELFDEIE--EKDLVPDVVTYSTIIDGYCKS---GNLTEAFKLFDEMIS--KG 761
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 375
+ P+ Y +L++ K + +A+ F Q G+ N + + C+
Sbjct: 762 ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNS---------LIDSFCK 812
Query: 376 EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP-LQEEAE 423
G++IE E + M ++ + P + Y L+ ++ + + EEAE
Sbjct: 813 HGKVIEARELFDDMV--DKKLTPNIV----TYTILIDAYGKAEMMEEAE 855
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 111/276 (40%), Gaps = 11/276 (3%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ ++ +A R+ D +MI GL +++ ++ G+ AM L
Sbjct: 352 LIDGFIKEGNIEEALRIKD---EMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEML 408
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLE 190
AG+ P T L + K E+LA M+ + +L+ L + L+
Sbjct: 409 MAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQ 468
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
AN+V + + G++ +Y +I + + A+E+ M A G + F +N L+
Sbjct: 469 KANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLI 528
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
C +V A ++ GE +KP+ TY I Y+++ +Q M+
Sbjct: 529 I--GLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKS---GEIQVAERYFKDML 583
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ PN Y +L++ EA+ F+ +
Sbjct: 584 SSG--IVPNNVIYTILIKGHCDVGNTVEALSTFKCM 617
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 108/264 (40%), Gaps = 14/264 (5%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-- 137
+ D + N+V+ MI G+ P + L+ AY +E A+ LK ++ GV P
Sbjct: 462 CHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDL 521
Query: 138 --LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195
+ +I L R +K + + ++ EK + + ++ ++ A +
Sbjct: 522 FCYNCLIIGLCR---AKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERY 578
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F G+ + IY ++I C G+ AL M G + ++ ++ +
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSK 638
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G + A F +++ + + PD YN +I + + ++ ++L M+ H
Sbjct: 639 NGKTKEAMGVF--LKFLKTGVVPDVFLYNSLISGFCKE---GDIEKASQLYDEML--HNG 691
Query: 316 LQPNVKTYALLVECFTKYCAVTEA 339
+ PN+ Y L+ K VT+A
Sbjct: 692 INPNIVVYNTLINGLCKLGEVTKA 715
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 112/254 (44%), Gaps = 17/254 (6%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALARLFGS 151
M+ GL P R++ ++ + + NG + AM + L GV P L+ +LI+ F
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISG---FCK 673
Query: 152 KGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+G K ++ M IN +I + L+ L + + A ++F + L
Sbjct: 674 EGDIEKASQLYDEMLHNGINPNI-VVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVV 732
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y +I CK+G+ + A ++ EM + G + + L+ G E A + F
Sbjct: 733 TYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHE- 791
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ +N +I ++ + + +V + EL MV+ K+L PN+ TY +L++
Sbjct: 792 --AQQKSVGSLSAFNSLIDSFCK---HGKVIEARELFDDMVD--KKLTPNIVTYTILIDA 844
Query: 330 FTKYCAVTEAIRHF 343
+ K + EA + F
Sbjct: 845 YGKAEMMEEAEQLF 858
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 112/258 (43%), Gaps = 14/258 (5%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP- 137
+ ++ D + +++ +M A L+P P ++ L+ + D + A L + + GV+P
Sbjct: 426 YLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPN 485
Query: 138 --LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195
++ TLI +A + L+I+ A + D+ + L+ L R K +E+A +
Sbjct: 486 VFMYGTLIKAYVQESRYEMAIELLKIMIA-NGVLPDLF-CYNCLIIGLCRAKKVEEAKML 543
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+ + G++ Y I K+G+ A +M ++G + + L+
Sbjct: 544 LVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCD 603
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G A +TF+ M E + PD Y+ +I + ++ E +G+ ++ K
Sbjct: 604 VGNTVEALSTFKCML--EKGLIPDIRAYSAIIHSLSKN------GKTKEAMGVFLKFLKT 655
Query: 316 -LQPNVKTYALLVECFTK 332
+ P+V Y L+ F K
Sbjct: 656 GVVPDVFLYNSLISGFCK 673
>gi|22165085|gb|AAM93702.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 160
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 23/125 (18%)
Query: 43 QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSP 102
+RR++ G + +V E+G RL ++++ + AR V +YDM+AA LSP
Sbjct: 44 ERRRRSEGGA--GDRSAVAGVVEKGPRLAYLQQYEERARAAGFTGVAGTVYDMVAAMLSP 101
Query: 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEIL 162
M SL+RELS+GV PLH +AL +F LAT+ +EIL
Sbjct: 102 ---------------------MQSLRRELSSGVHPLHGNFVALVHVFAKNDLATRCMEIL 140
Query: 163 AAMEK 167
A ME+
Sbjct: 141 ATMER 145
>gi|22165108|gb|AAM93725.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 160
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 23/125 (18%)
Query: 43 QRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSP 102
+RR++ G + +V E+G RL ++++ + AR V +YDM+AA LSP
Sbjct: 44 ERRRRSEGGA--GDRSAVAGVVEKGPRLAYLQQYEERARAAGFTGVAGTVYDMVAAMLSP 101
Query: 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEIL 162
M SL+RELS+GV PLH +AL +F LAT+ +EIL
Sbjct: 102 ---------------------MQSLRRELSSGVHPLHGNFVALVHVFAKNDLATRCMEIL 140
Query: 163 AAMEK 167
A ME+
Sbjct: 141 ATMER 145
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/349 (20%), Positives = 138/349 (39%), Gaps = 30/349 (8%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I+ + + H + + R ++ +M G+ +H ++ YT+ D + + KR
Sbjct: 417 IYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLIVFKRL 476
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKY 188
G P T L L+ G +K LE+ M E + ++++ + +++ V+ K
Sbjct: 477 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLK-TYSMMINGFVKLKD 535
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+A VF K G++ +Y+ +IA C G+ A++ EM+ TT F
Sbjct: 536 WANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMP 595
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR---VQDVAEL 305
+++ A G + F+ M P T+N +I ++ + D L
Sbjct: 596 IINGFAKSGDMRRSLEVFDMMR--RCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTL 653
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365
G+ +H TY +++ + +A +F LQN + E
Sbjct: 654 AGVSANEH--------TYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEA----- 700
Query: 366 LSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
L+A C+ GR+ L + M+ N +P + + Y L+ W
Sbjct: 701 ---LLKACCKSGRMQSALAVTKEMSARN--IPRNSFV----YNILIDGW 740
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 111/287 (38%), Gaps = 45/287 (15%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
+D V DM+ G+ P ++ ++ A+ G+ + A+ ++K RP T
Sbjct: 534 KDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 593
Query: 143 IALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKV------ 195
+ + F G + LE+ M + + L+ LV + +E A ++
Sbjct: 594 MPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTL 653
Query: 196 -----------------------------FLRGAKGGLRATDEIYDLMIAEDCKAGDHSN 226
F R GL Y+ ++ CK+G +
Sbjct: 654 AGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQS 713
Query: 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286
AL + EM A +F +N L+ A G A + M+ ++ +KPD TY
Sbjct: 714 ALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK--KEGVKPDIHTYTSF 771
Query: 287 IQAYTRAESYDR-VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
I A ++A +R Q + E+ + V +PN+KTY L++ + +
Sbjct: 772 ISACSKAGDMNRATQTIEEMEALGV------KPNIKTYTTLIKGWAR 812
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 5/209 (2%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R + +++ +M AG+S ++ ++ Y GD A R + G+ T
Sbjct: 639 RQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTY 698
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGA 200
AL + G L + M N R +++ IL++ R + +A + +
Sbjct: 699 EALLKACCKSGRMQSALAVTKEMSARNIP-RNSFVYNILIDGWARRGDVWEAADLIQQMK 757
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
K G++ Y I+ KAGD + A + EMEA G + L+ A +PE
Sbjct: 758 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPE 817
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQA 289
A + +E M+ +KPD Y+C++ +
Sbjct: 818 KALSCYEEMK--AVGLKPDKAVYHCLLTS 844
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 123/312 (39%), Gaps = 68/312 (21%)
Query: 34 EKKTRRKKQQRRQQKHGDSLLSTNG----SVVSAAEQ---------GLRLIFMEELMQHA 80
E++ RK QR +L TNG +V+SA E+ GL + F +
Sbjct: 276 EREGSRKSLQR--------ILDTNGDNWQAVISAFEKINKPSRTEFGLMVKF------YG 321
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R D R + M A G++P R + L+ AY + D E A+ +++ G+
Sbjct: 322 RRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMEEALSCVRKMKEEGIE---M 378
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
+L+ + + G G + G N + W ++A ++
Sbjct: 379 SLVTYSVIVG--GFSKAG----------NAEAADHWF------------DEAKRI----- 409
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
L A+ IY +I C+ + A + EME G A ++ ++ +
Sbjct: 410 HKTLNAS--IYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEK 467
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
F+ ++ E P TY C+I YT+ + +V+ ++ + ++ N+
Sbjct: 468 KGLIVFKRLK--ECGFTPTVVTYGCLINLYTKVGKISKALEVSRVM-----KEEGVKHNL 520
Query: 321 KTYALLVECFTK 332
KTY++++ F K
Sbjct: 521 KTYSMMINGFVK 532
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 10/273 (3%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
++ H RNR+ V M+ G P ++ L+ G + A+ L+ + G+
Sbjct: 282 ILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGI 341
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANK 194
P T + + +E++A M+K Q + L+ L R LE A
Sbjct: 342 EPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIG 401
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
++ + K GL Y+ +I E C G S AL+I + ME G +A T +N ++
Sbjct: 402 LYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLC 461
Query: 255 TCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
G E A FE M + G P TYN +I Y + V + A LL +M E+
Sbjct: 462 LGGDIEKAMVLFEKMLKMGP---LPTVVTYNTLINGYL---TKGNVNNAARLLDLMKEN- 514
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+P+ TY LV F+K+ + A +F+ +
Sbjct: 515 -GCEPDEWTYNELVSGFSKWGKLESASFYFQEM 546
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 137/344 (39%), Gaps = 27/344 (7%)
Query: 76 LMQHARNRD-APRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG 134
+++ RN + RV D + ++ G S + L++ EGA + K+ L++G
Sbjct: 176 MIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSG 235
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLED 191
++P T L + KG + IL+ + YD+ + L+ RN+ L+
Sbjct: 236 IQPSLLTFNTLINILSKKGKVREAELILSQI--FQYDLSPDVFTYTSLILGHCRNRNLDL 293
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A VF R K G Y +I C G AL++ EM G T + + L
Sbjct: 294 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYT--LP 351
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
A C I A + +P+ +TY +I +R +++ L M++
Sbjct: 352 ITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSR---LGKLEVAIGLYHKMLK 408
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 371
+ L PN TY L+ + A++ F ++ G L N + + ++
Sbjct: 409 E--GLVPNTVTYNALINELCVGGRFSTALKIFHWME----GHGSLANTQTYNE----IIK 458
Query: 372 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
LC G I + + E M K P+P Y TL++ ++
Sbjct: 459 GLCLGGDIEKAMVLFEKMLKMG-PLPTVV-----TYNTLINGYL 496
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 74/338 (21%), Positives = 137/338 (40%), Gaps = 28/338 (8%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
+A R+ D+ M G P +++ LV ++ G E A + + G+ P +
Sbjct: 503 NAARLLDL---MKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYT 559
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKG 202
L G L +L ME++ + +++ ++ L + +A K+ + A+
Sbjct: 560 TLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQ 619
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GL Y +I C+ G A +I ++ME + + ++ L+ G + A
Sbjct: 620 GLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA 679
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ ME + PD T+ +I + R+ LL MV+ +PN +T
Sbjct: 680 EILLKEME--RKGLAPDEVTFTSLIDGFV---VLGRIDHAFLLLRRMVD--VGCKPNYRT 732
Query: 323 YALLVECFTKYCAVTE---AIRHFRALQ--------NYEGGTKVLHNEGNFG-----DPL 366
Y++L++ K C + E A++H N+E + +L G D
Sbjct: 733 YSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTY 792
Query: 367 SLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILS 404
S + LCR+GR E + ++ M K+ P R + S
Sbjct: 793 STLVSGLCRKGRFYEAEQLVKDM-KERGFCPDREIYYS 829
Score = 42.7 bits (99), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 20/250 (8%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIAL---- 145
D++ +MI G+ P ++ + A E A+ + R G RP +T AL
Sbjct: 331 DMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGL 390
Query: 146 ---ARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+L + GL K L+ + Y+ L+ EL A K+F
Sbjct: 391 SRLGKLEVAIGLYHKMLKEGLVPNTVTYNA------LINELCVGGRFSTALKIFHWMEGH 444
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G A + Y+ +I C GD A+ + +M G + T +N L++ T G A
Sbjct: 445 GSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNA 504
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ M+ E+ +PD TYN ++ +++ + +++ + MVE L PN +
Sbjct: 505 ARLLDLMK--ENGCEPDEWTYNELVSGFSK---WGKLESASFYFQEMVE--CGLNPNPVS 557
Query: 323 YALLVECFTK 332
Y L++ +K
Sbjct: 558 YTTLIDGHSK 567
Score = 41.2 bits (95), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 97/258 (37%), Gaps = 42/258 (16%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL+P +F L+ + + G + A L+R + G +P + T L KGL +
Sbjct: 690 GLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLL-----KGLQKEC 744
Query: 159 LEI-------------LAAMEK-INYDIRQAWL----------------ILVEELVRNKY 188
L + + EK +N++I L LV L R
Sbjct: 745 LLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGR 804
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+A ++ + G EIY ++ CK + +AL+I + +EA G +
Sbjct: 805 FYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRA 864
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
L+ G E A A F+NM E D + ++ + D + ++
Sbjct: 865 LICALCKAGQVEEAQALFDNML--EKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIM-- 920
Query: 309 MVEDHKRLQPNVKTYALL 326
+ K PN++TY +L
Sbjct: 921 ---ESKNFTPNIQTYVIL 935
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 10/273 (3%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
++ H RNR+ V M+ G P ++ L+ G + A+ L+ + G+
Sbjct: 240 ILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGI 299
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANK 194
P T + + +E++A M+K Q + L+ L R LE A
Sbjct: 300 EPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIG 359
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
++ + K GL Y+ +I E C G S AL+I + ME G +A T +N ++
Sbjct: 360 LYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLC 419
Query: 255 TCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
G E A FE M + G P TYN +I Y + V + A LL +M E+
Sbjct: 420 LGGDIEKAMVLFEKMLKMGP---LPTVVTYNTLINGYL---TKGNVNNAARLLDLMKEN- 472
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+P+ TY LV F+K+ + A +F+ +
Sbjct: 473 -GCEPDEWTYNELVSGFSKWGKLESASFYFQEM 504
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 137/344 (39%), Gaps = 27/344 (7%)
Query: 76 LMQHARNRD-APRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG 134
+++ RN + RV D + ++ G S + L++ EGA + K+ L++G
Sbjct: 134 MIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSG 193
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLED 191
++P T L + KG + IL+ + YD+ + L+ RN+ L+
Sbjct: 194 IQPSLLTFNTLINILSKKGKVREAELILSQI--FQYDLSPDVFTYTSLILGHCRNRNLDL 251
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A VF R K G Y +I C G AL++ EM G T + + L
Sbjct: 252 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYT--LP 309
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
A C I A + +P+ +TY +I +R +++ L M++
Sbjct: 310 ITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL---GKLEVAIGLYHKMLK 366
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 371
+ L PN TY L+ + A++ F ++ G L N + + ++
Sbjct: 367 E--GLVPNTVTYNALINELCVGGRFSTALKIFHWME----GHGSLANTQTYNE----IIK 416
Query: 372 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
LC G I + + E M K P+P Y TL++ ++
Sbjct: 417 GLCLGGDIEKAMVLFEKMLKMG-PLPTVV-----TYNTLINGYL 454
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 20/250 (8%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIAL---- 145
D++ +MI G+ P ++ + A E A+ + R G RP +T AL
Sbjct: 289 DMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGL 348
Query: 146 ---ARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+L + GL K L+ + Y+ L+ EL A K+F
Sbjct: 349 SRLGKLEVAIGLYHKMLKEGLVPNTVTYNA------LINELCVGGRFSTALKIFHWMEGH 402
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G A + Y+ +I C GD A+ + +M G + T +N L++ T G A
Sbjct: 403 GSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNA 462
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ M+ E+ +PD TYN ++ +++ + +++ + MVE L PN +
Sbjct: 463 ARLLDLMK--ENGCEPDEWTYNELVSGFSK---WGKLESASFYFQEMVE--CGLNPNPVS 515
Query: 323 YALLVECFTK 332
Y L++ +K
Sbjct: 516 YTALIDGHSK 525
>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
Length = 597
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 3/213 (1%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M + G P ++ LV A+ G E A + AG P AL +
Sbjct: 299 VFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 358
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
GL EI + ME + + R ++ ILV+ R ++A F + G+R T +
Sbjct: 359 RAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMK 418
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ L+++ ++G+ + E+ ++ +G TF N +L+ G + F M
Sbjct: 419 SHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAM 478
Query: 270 EYGEDYM--KPDTETYNCVIQAYTRAESYDRVQ 300
E G+ + PDT TYN ++ AY RA DR++
Sbjct: 479 ERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRME 511
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 110/253 (43%), Gaps = 21/253 (8%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRE-------LSAGVRPLHETLIALARLFGSKGLATKG 158
SF ++ Y L D G L L A P +T L R + G +
Sbjct: 167 SFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRA 226
Query: 159 LEILAAMEKINY----DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+++ M++ + A+L + L++ + E A +V+ R K R E Y LM
Sbjct: 227 EGVISEMQRNGIPPTATVYNAYL---DGLLKARCSEKAVEVYQRMKKERCRTNTETYTLM 283
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I KA ++L + EM++ G + L++ A G+ E A FE M+ +
Sbjct: 284 INVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ--QA 341
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
+PD YN +++AY+RA Q +E+ +M +H +P+ +Y +LV+ F +
Sbjct: 342 GHEPDVYAYNALMEAYSRA---GLPQGASEIFSLM--EHMGCEPDRASYNILVDAFGRAG 396
Query: 335 AVTEAIRHFRALQ 347
EA F+ L+
Sbjct: 397 LHQEAEAAFQELK 409
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 10/273 (3%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
++ H RNR+ V M+ G P ++ L+ G + A+ L+ + G+
Sbjct: 240 ILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGI 299
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANK 194
P T + + +E++A M+K Q + L+ L R LE A
Sbjct: 300 EPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIG 359
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
++ + K GL Y+ +I E C G S AL+I + ME G +A T +N ++
Sbjct: 360 LYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLC 419
Query: 255 TCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
G E A FE M + G P TYN +I Y + V + A LL +M E+
Sbjct: 420 LGGDIEKAMVLFEKMLKMGP---LPTVVTYNTLINGYL---TKGNVNNAARLLDLMKEN- 472
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+P+ TY LV F+K+ + A +F+ +
Sbjct: 473 -GCEPDEWTYNELVSGFSKWGKLESASFYFQEM 504
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 137/344 (39%), Gaps = 27/344 (7%)
Query: 76 LMQHARNRD-APRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG 134
+++ RN + RV D + ++ G S + L++ EGA + K+ L++G
Sbjct: 134 MIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSG 193
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLED 191
++P T L + KG + IL+ + YD+ + L+ RN+ L+
Sbjct: 194 IQPSLLTFNTLINILSKKGKVREAELILSQI--FQYDLSPDVFTYTSLILGHCRNRNLDL 251
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A VF R K G Y +I C G AL++ EM G T + + L
Sbjct: 252 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYT--LP 309
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
A C I A + +P+ +TY +I +R +++ L M++
Sbjct: 310 ITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL---GKLEVAIGLYHKMLK 366
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 371
+ L PN TY L+ + A++ F ++ G L N + + ++
Sbjct: 367 E--GLVPNTVTYNALINELCVGGRFSTALKIFHWME----GHGSLANTQTYNE----IIK 416
Query: 372 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
LC G I + + E M K P+P Y TL++ ++
Sbjct: 417 GLCLGGDIEKAMVLFEKMLKMG-PLPTVV-----TYNTLINGYL 454
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 113/274 (41%), Gaps = 12/274 (4%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
+A R+ D+ M G P +++ LV ++ G E A + + G+ P +
Sbjct: 461 NAARLLDL---MKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYT 517
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKG 202
AL G L +L ME++ + +++ ++ L + +A K+ + +
Sbjct: 518 ALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQ 577
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GL Y +I C+ G A +I ++ME + + ++ L+ G + A
Sbjct: 578 GLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA 637
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ ME + PD T+ +I + R+ LL MV+ +PN +T
Sbjct: 638 EILLKEME--RKGLAPDEVTFTSLIDGFV---VLGRIDHAFLLLRRMVD--MGCKPNYRT 690
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 356
Y++L++ K C + E + F + NY G L
Sbjct: 691 YSVLLKGLQKECLLLEE-KIFPLVDNYFLGCNPL 723
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 20/250 (8%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIAL---- 145
D++ +MI G+ P ++ + A E A+ + R G RP +T AL
Sbjct: 289 DMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGL 348
Query: 146 ---ARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+L + GL K L+ + Y+ L+ EL A K+F
Sbjct: 349 SRLGKLEVAIGLYHKMLKEGLVPNTVTYNA------LINELCVGGRFSTALKIFHWMEGH 402
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G A + Y+ +I C GD A+ + +M G + T +N L++ T G A
Sbjct: 403 GSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNA 462
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ M+ E+ +PD TYN ++ +++ + +++ + MVE L PN +
Sbjct: 463 ARLLDLMK--ENGCEPDEWTYNELVSGFSK---WGKLESASFYFQEMVE--CGLNPNPVS 515
Query: 323 YALLVECFTK 332
Y L++ +K
Sbjct: 516 YTALIDGHSK 525
>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
Length = 1365
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 119/265 (44%), Gaps = 10/265 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V D+ G + ++ L+ AY G+ E A +L ++AG++P + FG
Sbjct: 668 VFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFG 727
Query: 151 SKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G A + E + ++ + ++++ RN LE+A ++ + + G + +
Sbjct: 728 RAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQ 787
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ ++A + +A E+ +++ AG +NH++S + G A F+ M
Sbjct: 788 VFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGM 847
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ E PD T+N +I Y+R + VQ+ LL M++ PN+ TY L+
Sbjct: 848 Q--EIGCSPDATTFNTLIMLYSRNQ---MVQEAQALLREMIKTGN--APNISTYTTLISA 900
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTK 354
+ + A +A F+++ E G K
Sbjct: 901 YGRLQAYEDAELVFKSIA--ETGCK 923
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 12/261 (4%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARL 148
+ ++ D+ AAGL P +++ L+ A +LN A+ + G P T A+ +
Sbjct: 181 SSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISV 240
Query: 149 FGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR-A 206
+G G I M++ + + ++ R+ +E+ ++ RG R +
Sbjct: 241 YGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERI--RGMMRDARCS 298
Query: 207 TDEI-YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+DEI Y+ MI KAG H A E+ +M+ GR + F L+ G A A
Sbjct: 299 SDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAM 358
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
FE+M + ++P + ++ +I AY +A D D M+ R P++ Y++
Sbjct: 359 FEDMLKSQ--VRPTLQAFSAMICAYAKA---DMFTDAEHTYSCMLRAGVR--PDLLAYSV 411
Query: 326 LVECFTKYCAVTEAIRHFRAL 346
+++ F K + I ++A+
Sbjct: 412 MLDVFFKAGMPEKCIILYKAM 432
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 93/234 (39%), Gaps = 41/234 (17%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+SP R+F + A++ NG+ E A ++ AG P + AL L+
Sbjct: 746 GISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYS-------- 797
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
R+ I EELV++ K GL +IY+ MI+
Sbjct: 798 --------------RETVEIDAEELVKDI------------KKAGLELDIDIYNHMISLY 831
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
K G + NA + M+ G FN L+ + + + A A M + P
Sbjct: 832 SKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGN--AP 889
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ TY +I AY R ++Y+ AEL+ + + +P+ Y +++ + K
Sbjct: 890 NISTYTTLISAYGRLQAYED----AELVFKSIAETG-CKPDATAYNVMINVYRK 938
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 97/253 (38%), Gaps = 48/253 (18%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP--LHET 141
+ P + ++D + + + ++ L+ Y +GD L R G RP +
Sbjct: 105 NQPGLAQELFDRAESSIGNCVQVYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFN 164
Query: 142 LIALARLFGS--KGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
++ AR G +GLA+ L+ D+ A
Sbjct: 165 IVIKARTRGGMQEGLASSLLQ----------DVYAA------------------------ 190
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
GLR Y+ +I+ S+A+ I EM+ G + +N ++S G
Sbjct: 191 ---GLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRV 247
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
E A + F M+ E PD TYN V+ A+ R R+++V + GMM + R +
Sbjct: 248 EAASSIFRIMQ--EQGFTPDAVTYNSVLHAFARD---GRIEEVERIRGMMRD--ARCSSD 300
Query: 320 VKTYALLVECFTK 332
TY ++ + K
Sbjct: 301 EITYNTMIHMYGK 313
>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g04810, chloroplastic; AltName: Full=Maize PPR4
homolog; Short=AtPPR4; Flags: Precursor
gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 952
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/349 (20%), Positives = 137/349 (39%), Gaps = 30/349 (8%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I+ + + H + + R ++ +M G+ +H ++ YT+ D + + KR
Sbjct: 416 IYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRL 475
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKY 188
G P T L L+ G +K LE+ M E + ++++ + +++ V+ K
Sbjct: 476 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLK-TYSMMINGFVKLKD 534
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+A VF K G++ +Y+ +I+ C G+ A++ EM+ TT F
Sbjct: 535 WANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMP 594
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR---VQDVAEL 305
++ A G + F+ M P T+N +I ++ + D L
Sbjct: 595 IIHGYAKSGDMRRSLEVFDMMRRCG--CVPTVHTFNGLINGLVEKRQMEKAVEILDEMTL 652
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365
G+ +H TY +++ + +A +F LQN + E
Sbjct: 653 AGVSANEH--------TYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEA----- 699
Query: 366 LSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
L+A C+ GR+ L + M+ N +P + + Y L+ W
Sbjct: 700 ---LLKACCKSGRMQSALAVTKEMSARN--IPRNSFV----YNILIDGW 739
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 111/287 (38%), Gaps = 45/287 (15%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
+D V DM+ G+ P ++ ++ A+ G+ + A+ ++K RP T
Sbjct: 533 KDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 592
Query: 143 IALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKV------ 195
+ + + G + LE+ M + + L+ LV + +E A ++
Sbjct: 593 MPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTL 652
Query: 196 -----------------------------FLRGAKGGLRATDEIYDLMIAEDCKAGDHSN 226
F R GL Y+ ++ CK+G +
Sbjct: 653 AGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQS 712
Query: 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286
AL + EM A +F +N L+ A G A + M+ ++ +KPD TY
Sbjct: 713 ALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK--KEGVKPDIHTYTSF 770
Query: 287 IQAYTRAESYDR-VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
I A ++A +R Q + E+ + V +PN+KTY L++ + +
Sbjct: 771 ISACSKAGDMNRATQTIEEMEALGV------KPNIKTYTTLIKGWAR 811
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 5/209 (2%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R + +++ +M AG+S ++ ++ Y GD A R + G+ T
Sbjct: 638 RQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTY 697
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGA 200
AL + G L + M N R +++ IL++ R + +A + +
Sbjct: 698 EALLKACCKSGRMQSALAVTKEMSARNIP-RNSFVYNILIDGWARRGDVWEAADLIQQMK 756
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
K G++ Y I+ KAGD + A + EMEA G + L+ A +PE
Sbjct: 757 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPE 816
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQA 289
A + +E M+ +KPD Y+C++ +
Sbjct: 817 KALSCYEEMKAMG--IKPDKAVYHCLLTS 843
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 63/312 (20%), Positives = 119/312 (38%), Gaps = 68/312 (21%)
Query: 34 EKKTRRKKQQRRQQKHGDSLLSTNG----SVVSAAEQ---------GLRLIFMEELMQHA 80
E++ RK QR +L TNG +V+SA E+ GL + F +
Sbjct: 275 EREGSRKSLQR--------ILDTNGDNWQAVISAFEKISKPSRTEFGLMVKF------YG 320
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R D R + M A G++P R + L+ AY + D + A+ +++
Sbjct: 321 RRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRK----------- 369
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
+ +G+E M + Y + +V + + E A+ F
Sbjct: 370 -------------MKEEGIE----MSLVTYSV------IVGGFSKAGHAEAADYWFDEAK 406
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ IY +I C+ + A + EME G A ++ ++ +
Sbjct: 407 RIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEK 466
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
F+ ++ E P TY C+I YT+ + +V+ ++ + ++ N+
Sbjct: 467 KGLVVFKRLK--ECGFTPTVVTYGCLINLYTKVGKISKALEVSRVM-----KEEGVKHNL 519
Query: 321 KTYALLVECFTK 332
KTY++++ F K
Sbjct: 520 KTYSMMINGFVK 531
>gi|357165906|ref|XP_003580534.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Brachypodium distachyon]
Length = 775
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 114/261 (43%), Gaps = 25/261 (9%)
Query: 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE-TLIALARLFGSKGLATKGLEIL 162
P++ + +V A +G E A + KR AG R L T AL + ++GLA K E+L
Sbjct: 181 PKTLNAVVSALATHGLLEPAFYCFKRLRDAGFRGLETPTYNALLSVLLTRGLAFKAFEVL 240
Query: 163 -------AAMEKINYDIRQAWLILVEELVRNKYLEDANKVF--LRGAKGGLRATDEIYDL 213
A++K Y++ V L R ++ + K+F +R G RA+ +Y +
Sbjct: 241 DEMSVSGCALDKGTYELA------VPALARAGRIDASRKLFDEMRQRDGVGRASPGVYSV 294
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
M+ K+G A+ + EM A G +T ++ G + +E M G
Sbjct: 295 MVDVLAKSGRLDAAMGMYREMVAVGHRVSTSVSTAMVEGLVRAGKLDAGMELWEEMRRGG 354
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
++P Y V++A R+ R+ A+L G M + P TYA LVE
Sbjct: 355 --LRPSFGLYTMVVEANARS---GRLDVAAKLFGDM--EKSGFFPTPATYACLVEMHASA 407
Query: 334 CAVTEAIRHFRALQNYEGGTK 354
V A+R + ++ N GT+
Sbjct: 408 GQVDIAMRMYHSMAN--AGTR 426
>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
Length = 950
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/349 (20%), Positives = 137/349 (39%), Gaps = 30/349 (8%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I+ + + H + + R ++ +M G+ +H ++ YT+ D + + KR
Sbjct: 414 IYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRL 473
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKY 188
G P T L L+ G +K LE+ M E + ++++ + +++ V+ K
Sbjct: 474 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLK-TYSMMINGFVKLKD 532
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+A VF K G++ +Y+ +I+ C G+ A++ EM+ TT F
Sbjct: 533 WANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMP 592
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR---VQDVAEL 305
++ A G + F+ M P T+N +I ++ + D L
Sbjct: 593 IIHGYAKSGDMRRSLEVFDMMRRCG--CVPTVHTFNGLINGLVEKRQMEKAVEILDEMTL 650
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365
G+ +H TY +++ + +A +F LQN + E
Sbjct: 651 AGVSANEH--------TYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEA----- 697
Query: 366 LSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
L+A C+ GR+ L + M+ N +P + + Y L+ W
Sbjct: 698 ---LLKACCKSGRMQSALAVTKEMSARN--IPRNSFV----YNILIDGW 737
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 111/287 (38%), Gaps = 45/287 (15%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
+D V DM+ G+ P ++ ++ A+ G+ + A+ ++K RP T
Sbjct: 531 KDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 590
Query: 143 IALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKV------ 195
+ + + G + LE+ M + + L+ LV + +E A ++
Sbjct: 591 MPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTL 650
Query: 196 -----------------------------FLRGAKGGLRATDEIYDLMIAEDCKAGDHSN 226
F R GL Y+ ++ CK+G +
Sbjct: 651 AGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQS 710
Query: 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286
AL + EM A +F +N L+ A G A + M+ ++ +KPD TY
Sbjct: 711 ALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK--KEGVKPDIHTYTSF 768
Query: 287 IQAYTRAESYDR-VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
I A ++A +R Q + E+ + V +PN+KTY L++ + +
Sbjct: 769 ISACSKAGDMNRATQTIEEMEALGV------KPNIKTYTTLIKGWAR 809
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 5/209 (2%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R + +++ +M AG+S ++ ++ Y GD A R + G+ T
Sbjct: 636 RQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTY 695
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGA 200
AL + G L + M N R +++ IL++ R + +A + +
Sbjct: 696 EALLKACCKSGRMQSALAVTKEMSARNIP-RNSFVYNILIDGWARRGDVWEAADLIQQMK 754
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
K G++ Y I+ KAGD + A + EMEA G + L+ A +PE
Sbjct: 755 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPE 814
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQA 289
A + +E M+ +KPD Y+C++ +
Sbjct: 815 KALSCYEEMKAMG--IKPDKAVYHCLLTS 841
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 63/312 (20%), Positives = 119/312 (38%), Gaps = 68/312 (21%)
Query: 34 EKKTRRKKQQRRQQKHGDSLLSTNG----SVVSAAEQ---------GLRLIFMEELMQHA 80
E++ RK QR +L TNG +V+SA E+ GL + F +
Sbjct: 273 EREGSRKSLQR--------ILDTNGDNWQAVISAFEKISKPSRTEFGLMVKF------YG 318
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R D R + M A G++P R + L+ AY + D + A+ +++
Sbjct: 319 RRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRK----------- 367
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
+ +G+E M + Y + +V + + E A+ F
Sbjct: 368 -------------MKEEGIE----MSLVTYSV------IVGGFSKAGHAEAADYWFDEAK 404
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ IY +I C+ + A + EME G A ++ ++ +
Sbjct: 405 RIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEK 464
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
F+ ++ E P TY C+I YT+ + +V+ ++ + ++ N+
Sbjct: 465 KGLVVFKRLK--ECGFTPTVVTYGCLINLYTKVGKISKALEVSRVM-----KEEGVKHNL 517
Query: 321 KTYALLVECFTK 332
KTY++++ F K
Sbjct: 518 KTYSMMINGFVK 529
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 113/272 (41%), Gaps = 23/272 (8%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R ++ MI G P PR F+ LV AY +GD+ A LK+ + G +P + +
Sbjct: 95 RCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGY---VVYN 151
Query: 147 RLFGSKGLATK---GLEILAAMEKINYDIRQAWLILVEELVRN--------KYLEDANKV 195
L G G+ + G ++L EK ++ +A ++L + + N E A V
Sbjct: 152 ILIG--GICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNV 209
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
G Y +I C A A ++ EM+ G + + L+
Sbjct: 210 IREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCK 269
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G E A F+ ME D P+ TY +I AY ++ + +V E MM+ K
Sbjct: 270 AGFIEQARNWFDEME--RDGCAPNVVTYTALIHAYLKSRKVSKANEVYE---MMLS--KG 322
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
PN+ TY L++ K + +A + ++ ++
Sbjct: 323 CTPNIVTYTALIDGLCKAGKIEKASQIYKIMK 354
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 26/269 (9%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIAL 145
N ++ D + G P ++ LV + +GD + AM K L G+RP ++ TLI
Sbjct: 420 NRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLI-- 477
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQA-------WLILVEELVRNKYLEDANKVFLR 198
KGL +GL IL A++ +N + + +++ L + L DAN +
Sbjct: 478 ------KGLCQQGL-ILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGD 530
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G Y+ ++ C+ +A+E+ M + G +N LL+
Sbjct: 531 AITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAK 590
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E F+ M E P+ TYN +I++ ++ +V + +LLG M K L P
Sbjct: 591 SEEVMEIFKAMT--EKGCAPNIITYNTIIESLCNSK---KVNEAVDLLGEM--KSKGLTP 643
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+V ++ L+ F K + A FR ++
Sbjct: 644 DVVSFGTLITGFCKVGDLDGAYGLFRGME 672
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 101/247 (40%), Gaps = 20/247 (8%)
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
R +G KG + ++ M+ N D ++ ++ LV Y A+KV++R +
Sbjct: 163 RFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVE 222
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+ Y + I C+ G AL + M G + + +++ G + A
Sbjct: 223 SDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRAREL 282
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
F+ M E + PD T+N ++ A + V + L +++ + + PN+ T+ +
Sbjct: 283 FDEML--ECCLCPDVTTFNKLVHALCKK---GFVLESERLFDKVLK--RGVCPNLFTFNI 335
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELL 383
++ K ++ A+R + EG D ++ + LCR+ R++E
Sbjct: 336 FIQGLCKEGSLDRAVRLLGCVS----------REGLRPDVVTYNTVICGLCRKSRVVEAE 385
Query: 384 EALEAMA 390
E L M
Sbjct: 386 ECLHKMV 392
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 105/258 (40%), Gaps = 10/258 (3%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
D R ++ +M+ L P +F+ LV A G + + L GV P T
Sbjct: 275 DNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFN 334
Query: 144 ALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
+ +G + + +L + E + D+ + ++ L R + +A + +
Sbjct: 335 IFIQGLCKEGSLDRAVRLLGCVSREGLRPDV-VTYNTVICGLCRKSRVVEAEECLHKMVN 393
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
GG D Y+ +I CK G +A I + G F + L++ G P+
Sbjct: 394 GGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQ 453
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A A F++ G+ ++P YN +I+ + + +L+ M E K +P++
Sbjct: 454 AMAVFKD-GLGKG-LRPSIIVYNTLIKGLCQQ---GLILPALQLMNEMAE--KGCKPDIW 506
Query: 322 TYALLVECFTKYCAVTEA 339
TY L++ K +++A
Sbjct: 507 TYNLIINGLCKMGCLSDA 524
>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
Length = 905
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 129/335 (38%), Gaps = 34/335 (10%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R +++ +M G+ +H ++ YT+ + + +R G +P + L
Sbjct: 391 RAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLL 450
Query: 147 RLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
L+ G K L I ME I ++ + + +L+ + +A +F + GL
Sbjct: 451 NLYVKIGKVAKALSISKEMESCGIKHN-NKTYSMLINGFIHLHDFANAFAIFEEMLRSGL 509
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ IY+L+I CK G+ A+ I +M+ + F ++ A G + A
Sbjct: 510 QPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALD 569
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
T + M P TYN +I R R V + + + + PN TY
Sbjct: 570 TLDLMR--RSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSI-----AGITPNEHTYT 622
Query: 325 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY-----LRALCREGRI 379
+++ + + +A +F ++ E G K L +Y LRA C+ GR+
Sbjct: 623 IIMRGYAASGDIGKAFEYFTKIK--ESGLK-----------LDVYIYETLLRACCKSGRM 669
Query: 380 IELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
L M+ Q +P I Y L+ W
Sbjct: 670 QSALAVTREMS--FQKIPRNTFI----YNILIDGW 698
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 8/249 (3%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
+ P R+F ++ Y + GD + A+ +L +G P T AL K + +
Sbjct: 544 MQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAV 603
Query: 160 EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L M + + I++ + + A + F + + GL+ IY+ ++
Sbjct: 604 SVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 663
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
CK+G +AL + EM TF +N L+ A G A + M+ ED + P
Sbjct: 664 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK--EDGVPP 721
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
+ TY I A +A R + V E MV+ L+PNVKTY L++ + +
Sbjct: 722 NIHTYTSYINACCKAGDMQRAEKVIE---EMVD--VGLKPNVKTYTTLIKGWARVSLPDR 776
Query: 339 AIRHFRALQ 347
A++ F ++
Sbjct: 777 ALKCFEEMK 785
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 116/284 (40%), Gaps = 34/284 (11%)
Query: 62 SAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHE 121
S E GL +++ +A+ D +M A G+ P F LV AY + D
Sbjct: 296 SRREFGLMIVY------YAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMR 349
Query: 122 GAMHSLKRELSAGVRPLHETLIALARLFG------SKGLATKGLEILAAMEK-------- 167
GA+ ++ S G+ T L F G + E++ ME+
Sbjct: 350 GALSCVEEMKSEGLELTIVTYSILISGFAKINDSHQSGNMERAEELVREMEEDGIDAPID 409
Query: 168 INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
+ + + + I+ E NK L VF R + G + + Y ++ K G + A
Sbjct: 410 VYHSMMHGYTIIQNE---NKCL----VVFERLKECGFKPSIISYGCLLNLYVKIGKVAKA 462
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
L I+ EME+ G ++ L++ AFA FE M ++PD YN +I
Sbjct: 463 LSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEML--RSGLQPDRAIYNLLI 520
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+A+ + + DR + E + +R+QP+ + + ++E +
Sbjct: 521 EAFCKMGNMDRAICILEKM-----QKERMQPSNRAFRPIIEGYA 559
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 11/214 (5%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVR---P 137
R R V+ M AG++P ++ ++ Y +GD A + +G++
Sbjct: 595 RKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVY 654
Query: 138 LHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKV 195
++ETL+ R G L + M +KI + + IL++ R + +A +
Sbjct: 655 IYETLL---RACCKSGRMQSALAVTREMSFQKIPRNT-FIYNILIDGWARRGDVWEAEDL 710
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+ + G+ Y I CKAGD A ++ EM G + L+ A
Sbjct: 711 MKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 770
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
+P+ A FE M+ +KPD +Y+C++ +
Sbjct: 771 VSLPDRALKCFEEMKLAG--LKPDEASYHCLVTS 802
>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
Length = 597
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 3/213 (1%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M + G P ++ LV A+ G E A + AG P AL +
Sbjct: 299 VFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 358
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
GL EI + ME + + R ++ ILV+ R ++A F + G+R T +
Sbjct: 359 RAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMK 418
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ L+++ ++G+ + E+ ++ +G TF N +L+ G + F M
Sbjct: 419 SHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAM 478
Query: 270 EYGEDYM--KPDTETYNCVIQAYTRAESYDRVQ 300
E G+ PDT TYN ++ AY RA DR++
Sbjct: 479 ERGDGASAGAPDTSTYNVLVNAYGRAGYLDRME 511
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 21/253 (8%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRE-------LSAGVRPLHETLIALARLFGSKGLATKG 158
SF ++ Y L D G L L A P +T L R + G +
Sbjct: 167 SFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRA 226
Query: 159 LEILAAMEKINY----DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+++ M++ + A+L + L++ + E A +V+ R K R Z Y LM
Sbjct: 227 EGVISEMQRNGIPPTATVYNAYL---DGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLM 283
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I KA ++L + EM++ G + L++ A G+ E A FE M+ +
Sbjct: 284 INVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ--QA 341
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
+PD YN +++AY+RA Q +E+ +M +H +P+ +Y +LV+ F +
Sbjct: 342 GHEPDVYAYNALMEAYSRA---GLPQGASEIFSLM--EHMGCEPDRASYNILVDAFGRAG 396
Query: 335 AVTEAIRHFRALQ 347
EA F+ L+
Sbjct: 397 LHQEAEAAFQELK 409
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 154/349 (44%), Gaps = 29/349 (8%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
+ + + + R DA V D +M + P +++ ++ + GD E +
Sbjct: 201 VVIAGMWRAGRGGDAVEVFD---EMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQM 257
Query: 131 LSAGVRP---LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNK 187
+ G++P + L++ G G + L+ +A+ + + + IL + L RN
Sbjct: 258 VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGF--TYSILFDGLSRNG 315
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+ +F + K G+ D +++ CK G S A E+ + AG + T +N
Sbjct: 316 DSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYN 375
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
L++ G E AF+TF M+ ++KPD TYN +I +AE QD L
Sbjct: 376 TLINGYCQTGELEGAFSTFGQMK--SRHIKPDHITYNALINGLCKAERITNAQD----LL 429
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
M ++D+ + P V+T+ L++ + + + + +Q E G K N ++G
Sbjct: 430 MEMQDNG-VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ--ENGLK--PNVVSYGS--- 481
Query: 368 LYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
+ A C+ G+I E + L+ M ++ V P A + Y ++ +++E
Sbjct: 482 -IVNAFCKNGKIPEAVAILDDMF--HKDVLPNAQV----YNAIIDAYVE 523
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 123/316 (38%), Gaps = 23/316 (7%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V+ ++ AGL P ++ L+ Y G+ EGA + + S ++P H T AL
Sbjct: 357 EVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGL 416
Query: 150 GSKGLATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
T ++L M+ +N + + + L++ R LE V + GL+
Sbjct: 417 CKAERITNAQDLLMEMQDNGVNPTV-ETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPN 475
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y ++ CK G A+ I +M + +N ++ G + AF E
Sbjct: 476 VVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVE 535
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M+ + + P TYN +I+ +++ L + RL P+ +Y L+
Sbjct: 536 KMK--SNGISPSIVTYNLLIKGLCNQSQISEAEEIINSL-----SNHRLIPDAVSYNTLI 588
Query: 328 ECFTKYCAVTEAIRHFRALQNY--EGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 385
+ +A+ + + Y + + H + L GR+IE+
Sbjct: 589 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQ----------LISGLGGAGRLIEMEYL 638
Query: 386 LEAMAKDNQPVPPRAM 401
+ M ++N VP A+
Sbjct: 639 YQKMMQNNV-VPSNAI 653
>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 779
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 101/243 (41%), Gaps = 15/243 (6%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
SF L+ AY NG HE ++H L R V P T + GL +GL L A
Sbjct: 111 SFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQ 170
Query: 166 ---EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAG 222
E I DI + L+ +E+A VF + G+ Y+ ++ +A
Sbjct: 171 MRHEGIQPDI-ITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQAD 229
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
H E+ EME AG +N L+ G A F+ M+ E PD T
Sbjct: 230 RHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQ--EAGCTPDVVT 287
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTKYCAVTEAI 340
++ +++AY + YD V+ ++ D K +P+V TY L++ F + E+I
Sbjct: 288 FSTLLEAYGKHGCYDEVR-------LLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESI 340
Query: 341 RHF 343
F
Sbjct: 341 NLF 343
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 107/261 (40%), Gaps = 8/261 (3%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V +++ +M AG +P +++ L+ AY G + A K+ AG P T L
Sbjct: 234 VGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLE 293
Query: 148 LFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+G G + + M E+ + L++ + + +++ +F GG+
Sbjct: 294 AYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEP 353
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y ++ K G H A +I M + TT F L++ + A F
Sbjct: 354 DMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAF 413
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+M+ E KPD ETYN +I A+ Y + + L M+ E + +V TY L
Sbjct: 414 NSMK--ESGCKPDLETYNALIGAHAGGGLY--CEAGSAYLTMIDEG---ISADVSTYNSL 466
Query: 327 VECFTKYCAVTEAIRHFRALQ 347
+E F + +AI R ++
Sbjct: 467 IEAFGRGGLFDDAIEFSRDME 487
Score = 45.8 bits (107), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 89/217 (41%), Gaps = 5/217 (2%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
++ +D++ G+ P ++ GL+ + G H+ A + L + V P + L +
Sbjct: 341 NLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAY 400
Query: 150 GSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G+ L ++ +M++ D+ ++ Y E A +L G+ A
Sbjct: 401 GNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCE-AGSAYLTMIDEGISAD 459
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ +I + G +A+E + +ME A + L+ T G+ + A A F
Sbjct: 460 VSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGLFDEAKAQFL 519
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
+++ G + P ++Y ++ R +D V E
Sbjct: 520 DLQVGGEL--PSVDSYCLLLSVCARRNRWDDASKVLE 554
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 153/340 (45%), Gaps = 29/340 (8%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-- 137
R DA V D +M + P +++ ++ + GD E + + G++P
Sbjct: 29 GRGGDAVEVFD---EMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNA 85
Query: 138 -LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF 196
+ L++ G G + L+ +A+ + + + IL + L RN + +F
Sbjct: 86 ITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGF--TYSILFDGLSRNGDSKAMLSLF 143
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ K G+ D +++ CK G S A E+ + AG + T +N L++
Sbjct: 144 GKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQT 203
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G E AF+TF M+ ++KPD TYN +I +AE R+ + +LL M ++D+ +
Sbjct: 204 GELEGAFSTFGQMK--SRHIKPDHITYNALINGLCKAE---RITNAQDLL-MEMQDNG-V 256
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 376
P V+T+ L++ + + + + +Q E G K N ++G + A C+
Sbjct: 257 NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ--ENGLK--PNVVSYGS----IVNAFCKN 308
Query: 377 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
G+I E + L+ M ++ V P A + Y ++ +++E
Sbjct: 309 GKIPEAVAILDDMF--HKDVLPNAQV----YNAIIDAYVE 342
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/305 (20%), Positives = 122/305 (40%), Gaps = 55/305 (18%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V+ ++ AGL P ++ L+ Y G+ EGA + + S ++P H T AL
Sbjct: 176 EVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNAL---- 231
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+ L + + + +A + + G+ T E
Sbjct: 232 ------------------------------INGLCKAERITNAQDLLMEMQDNGVNPTVE 261
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFEN 268
++ +I + G + EM+ G + +++ G IPE A A ++
Sbjct: 262 TFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPE-AVAILDD 320
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALL 326
M + +D + P+ + YN +I AY D+ ++VE K + P++ TY LL
Sbjct: 321 M-FHKDVL-PNAQVYNAIIDAYVEHGPNDQAF-------ILVEKMKSNGISPSIVTYNLL 371
Query: 327 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEAL 386
++ ++EA +L N+ +++ + ++ +S A C G I + L+
Sbjct: 372 IKGLCNQSQISEAEEIINSLSNH----RLIPDAVSYNTLIS----ACCYRGNIDKALDLQ 423
Query: 387 EAMAK 391
+ M K
Sbjct: 424 QRMHK 428
>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
Length = 742
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 144/361 (39%), Gaps = 25/361 (6%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM+A+G+SP +F+ L+ +G + A + G P + L R + G
Sbjct: 46 DMVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAG 105
Query: 154 LATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+KGLE+L M ++ + + + L+ + +DA K+ K GL ++
Sbjct: 106 FTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFN 165
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMA----TTFHFNHLLSCQATCGIPEVAFATFEN 268
I+ C +G A I +M+ + +N +L G+ E A A FE
Sbjct: 166 ARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEK 225
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVEDHKRLQPNVKTYALLV 327
M+ E+ M + E+YN + R Q V E++ M +E PNV +Y +++
Sbjct: 226 MKVSENLM--NRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGME------PNVYSYNIVM 277
Query: 328 ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
+ K + +A R L + VL + + + L C G++ E L
Sbjct: 278 DGLCKNGVLFDA----RMLMRLMTSSGVLPDTVTY----TTLLHGYCHTGKVSEANNVLR 329
Query: 388 AMAKDN---QPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGER 444
M +D ++ S +S E LQ+ E GY ID + I GL
Sbjct: 330 EMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNG 389
Query: 445 K 445
K
Sbjct: 390 K 390
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 9/185 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
++ ++ L + + +A K F+ L+ IYD+ I CK G S+A + +M
Sbjct: 435 SYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDM 494
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRA 293
E G T +N L+ G F + + E E + PD YN V+ +
Sbjct: 495 EKKGCNKTLQTYNSLI---MGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEG 551
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
RV+D +L M++ K + PN+ ++++L++ F K C + F N G
Sbjct: 552 ---GRVKDAPSVLDEMLQ--KGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHK 606
Query: 354 KVLHN 358
+ L++
Sbjct: 607 EALYS 611
>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 103/254 (40%), Gaps = 41/254 (16%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
HAR + R ++ ++ + G P +++ L+ AY+ G GA + L AGV+
Sbjct: 251 HAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKAD 310
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
H + L FG GL + I +M+K+
Sbjct: 311 HVSYNILIDAFGRAGLISDAQAIYDSMKKV------------------------------ 340
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G + T + + L+++ KAG ++A +E+ G TF FN LL G
Sbjct: 341 ----GFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGR 396
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ + +E+M+ KPD T N +I Y + +R +++ L + K P
Sbjct: 397 MDKMESLYESMQ--GSVCKPDIITLNTLINVYAQGGYIERAEEIFNSL-----ESKGFTP 449
Query: 319 NVKTYALLVECFTK 332
+V ++ L+ ++K
Sbjct: 450 DVMSWTSLMGAYSK 463
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 104/273 (38%), Gaps = 41/273 (15%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
+ ++R R V+++M + SPG +++ + +G + A + + GV
Sbjct: 143 MAAYSRGGQLERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGV 202
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195
P T + ++G + K + +M K + L
Sbjct: 203 PPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKA---------LCPPSLF----------- 242
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
Y +I + G+ A EI E+++ G + + +N LL +
Sbjct: 243 --------------TYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSR 288
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G P A FE M E +K D +YN +I A+ RA Q + + + +
Sbjct: 289 GGHPAGAKEVFETML--EAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKV-----G 341
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
+P +K++ LL+ F K VT+A R L++
Sbjct: 342 FKPTMKSHILLLSAFVKAGRVTDAENFVRRLES 374
>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 932
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 139/349 (39%), Gaps = 28/349 (8%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ + H + + R ++ +M G+ +H ++ YT+ G+ E + R
Sbjct: 390 VIYGGIIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDR 449
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEI--LAAMEKINYDIRQAWLILVEELVRNK 187
G P + L L+ G +K LEI + M I ++++ + +L+ ++ K
Sbjct: 450 LKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMK-TYSMLINGFLKLK 508
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+A VF K GL+ +Y+ +I C G+ A+ + +M+ TT F
Sbjct: 509 DWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFL 568
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ A G A F+ M P TYN +I E + VA L
Sbjct: 569 PIIHGFARAGEMRRALEIFDMMR--RSGCIPTVHTYNALILGLV--EKRQMTKAVAILDE 624
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
M V + PN TY L++ + +A ++F VL NEG D +
Sbjct: 625 MNVAG---VGPNEHTYTTLMQGYASLGDTEKAFQYF----------TVLRNEGLEIDVYT 671
Query: 368 L--YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
L++ C+ GR+ L + M+ N +P + Y L+ W
Sbjct: 672 YEALLKSCCKSGRMQSALAVTKEMSAKN--IPRNTFV----YNILIDGW 714
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 9/220 (4%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R + ++ +M AG+ P ++ L+ Y GD E A + G+ T
Sbjct: 613 RQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTY 672
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGA 200
AL + G L + M N R ++ IL++ R + +A + +
Sbjct: 673 EALLKSCCKSGRMQSALAVTKEMSAKNIP-RNTFVYNILIDGWARRGDVWEAADLMQQMR 731
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
K GL Y I CKAGD A EI EMEA+G + L++ A +PE
Sbjct: 732 KEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPE 791
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAY----TRAESY 296
A + FE M+ KPD Y+C++ + T A+SY
Sbjct: 792 KALSCFEEMKLAG--FKPDKAVYHCLVTSLLSRATFAQSY 829
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 96/254 (37%), Gaps = 41/254 (16%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ R D M A G+ P + L+ AY + D E A+H +++ G+
Sbjct: 294 YGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEGIE-- 351
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
T++ + + G G A G N D W E + K L N V
Sbjct: 352 -MTIVTYSIIVG--GFAKMG----------NADAADHWF----EEAKEK-LPSLNAV--- 390
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
IY +I C+ + A + EME G A ++ ++ G
Sbjct: 391 -----------IYGGIIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGN 439
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E F+ ++ E P +Y C+I YT+ + ++++++ M H
Sbjct: 440 EEKCLIVFDRLK--ECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKH----- 492
Query: 319 NVKTYALLVECFTK 332
N+KTY++L+ F K
Sbjct: 493 NMKTYSMLINGFLK 506
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 97/247 (39%), Gaps = 8/247 (3%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P R+F ++ + G+ A+ +G P T AL K TK + I
Sbjct: 562 PTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAI 621
Query: 162 LAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220
L M + + L++ E A + F GL Y+ ++ CK
Sbjct: 622 LDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCK 681
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
+G +AL + EM A TF +N L+ A G A + M ++ + PD
Sbjct: 682 SGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMR--KEGLLPDI 739
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
TY I A +A +Q E++ M + ++PN+KTY L+ + + +A+
Sbjct: 740 HTYTSFINACCKAGD---MQKATEIIQEM--EASGIKPNLKTYTTLINGWARASMPEKAL 794
Query: 341 RHFRALQ 347
F ++
Sbjct: 795 SCFEEMK 801
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 142/345 (41%), Gaps = 31/345 (8%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R+ DV M++ G+ +++ L+ G E A LK ++ G +P T L
Sbjct: 354 RIKDV---MVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLI 410
Query: 147 RLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
+ + + LE+L MEK N ++ ++ L K L ANK+ + GL+
Sbjct: 411 EGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLK 470
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+Y ++I G A + M +G F +N ++SC + G E A
Sbjct: 471 PNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 530
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+E +KPD T+ I Y++ ++ + A+ M+ DH L PN Y +
Sbjct: 531 L--LEIQGRGLKPDAVTFGAFILGYSKT---GKMTEAAKYFDEML-DHG-LMPNNPLYTV 583
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD--PLSLYLRALCREGRIIELL 383
L+ K + EA+ FR LH G D S ++ L + GR+ E L
Sbjct: 584 LINGHFKAGNLMEALSIFRR----------LHALGVLPDVQTCSAFIHGLLKNGRVQEAL 633
Query: 384 EALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEI 428
+ + K+ VP Y +L+S + + Q E E +E+
Sbjct: 634 KVFSEL-KEKGLVPD-----VFTYSSLISGFCK--QGEVEKAFEL 670
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 133/330 (40%), Gaps = 34/330 (10%)
Query: 167 KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSN 226
K+ +D+ + LV L + L A +V + + GL + IY L+I C+ GD
Sbjct: 223 KMGFDV-YTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDE 281
Query: 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286
A+E+ M G + T+ + + + A TFE M+ + +KPD + +
Sbjct: 282 AVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQ--KTGLKPDYNACSAL 339
Query: 287 IQAYTRAESYD---RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
I + R D R++DV G+ + N+ TY +L+ K+ + +A
Sbjct: 340 IDGFMREGDIDEVLRIKDVMVSCGIPI--------NLITYNVLIHGLCKFGKMEKAAEIL 391
Query: 344 RALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE---GRIIELLEALEAMAKDNQPVPPRA 400
+ + G K N F L + CRE GR +ELL+ +E V A
Sbjct: 392 KGMVTL--GCK--PNSRTF----CLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGA 443
Query: 401 MI---LSRKYRTLVSSWIEPLQEEAELGYEIDY---IARYISEGGLTGERKRWVPRRGKT 454
MI K +L + +E + + Y I Y SEG + E +R + +
Sbjct: 444 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIE-EARRLLDGMSCS 502
Query: 455 PLDPDAVGFIYSNPMETSFKQRCLEDGKKY 484
+ PD F Y+ + K +E+ Y
Sbjct: 503 GVAPDI--FCYNAIISCLSKAGKMEEASTY 530
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 13/254 (5%)
Query: 97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156
A G+ P ++ + NG + A+ G+ P T +L F +G
Sbjct: 606 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 665
Query: 157 KGLEIL--AAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
K E+ ++ I +I + LV+ L ++ ++ A K+F + GL Y M
Sbjct: 666 KAFELHDEMCLKGIAPNIF-IYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 724
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF-ENMEYGE 273
I CK+ + + A + +EM + G +F +N L+ G E A F E ++ G
Sbjct: 725 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG- 783
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
T ++N +I Y ++ ++Q+ ++L M+ K++ P+ TY +++ K
Sbjct: 784 ---FATTLSFNTLIDGYCKS---CKIQEASQLFQEMIA--KQIMPDHVTYTTVIDWHCKA 835
Query: 334 CAVTEAIRHFRALQ 347
+ EA F+ +Q
Sbjct: 836 GKMEEANLLFKEMQ 849
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 4/217 (1%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL-SAGVRPL 138
++ D R + M GL P ++ ++ Y ++ SL E+ S GV+P
Sbjct: 694 CKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC-KSENVAEAFSLFHEMPSKGVQPH 752
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
AL +G K + + M + + ++ L++ ++ +++A+++F
Sbjct: 753 SFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQE 812
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+ Y +I CKAG A + EM+ + T + L+ G
Sbjct: 813 MIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQ 872
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
FA FE M +KPD TY VI A+ + ++
Sbjct: 873 SSEVFALFEKMV--AKGVKPDEVTYGLVIYAHCKEDN 907
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 150/340 (44%), Gaps = 29/340 (8%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-- 137
R DA V D +M + P +++ ++ + GD E + + G++P
Sbjct: 214 GRGGDAVEVFD---EMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNA 270
Query: 138 -LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF 196
+ L++ G G + L+ +A+ + + + IL + L RN + +F
Sbjct: 271 ITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGF--TYSILFDGLSRNGDSKAMLSLF 328
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ K G+ D +++ CK G S A E+ + AG + T +N L++
Sbjct: 329 GKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQT 388
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G E AF+TF M+ ++KPD TYN +I +AE QD L M ++D+ +
Sbjct: 389 GELEGAFSTFGQMK--SRHIKPDHITYNALINGLCKAERITNAQD----LLMEMQDNG-V 441
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 376
P V+T+ L++ + + + + +Q E G K N ++G + A C+
Sbjct: 442 NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ--ENGLKP--NVVSYGS----IVNAFCKN 493
Query: 377 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
G+I E + L+ M ++ V P A + Y ++ +++E
Sbjct: 494 GKIPEAVAILDDMF--HKDVLPNAQV----YNAIIDAYVE 527
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/305 (20%), Positives = 122/305 (40%), Gaps = 55/305 (18%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V+ ++ AGL P ++ L+ Y G+ EGA + + S ++P H T AL
Sbjct: 361 EVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNAL---- 416
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+ L + + + +A + + G+ T E
Sbjct: 417 ------------------------------INGLCKAERITNAQDLLMEMQDNGVNPTVE 446
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFEN 268
++ +I + G + EM+ G + +++ G IPE A A ++
Sbjct: 447 TFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPE-AVAILDD 505
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALL 326
M + +D + P+ + YN +I AY D+ ++VE K + P++ TY LL
Sbjct: 506 M-FHKDVL-PNAQVYNAIIDAYVEHGPNDQAF-------ILVEKMKSNGISPSIVTYNLL 556
Query: 327 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEAL 386
++ ++EA +L N+ +++ + ++ +S A C G I + L+
Sbjct: 557 IKGLCNQSQISEAEEIINSLSNH----RLIPDAVSYNTLIS----ACCYRGNIDKALDLQ 608
Query: 387 EAMAK 391
+ M K
Sbjct: 609 QRMHK 613
>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 504
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 109/255 (42%), Gaps = 43/255 (16%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDH-EGAMHSLKRELSAGVRP 137
HAR + R ++ ++ + G P +++ L+ AY+ G+H GA + + AGVRP
Sbjct: 242 HAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYS-RGEHPTGAKEVFQAMVEAGVRP 300
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFL 197
++++Y+ IL++ R DA V+
Sbjct: 301 ----------------------------DQVSYN------ILIDAFGRAGLTADAQAVYD 326
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ G + T + + L+++ KAG + A + E+E +G TF FN LLS G
Sbjct: 327 SMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSG 386
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+ + E+M KPD T N +I AY + ++ ++V L + K L
Sbjct: 387 RIDEMESLLESMV--SSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSL-----ESKGLT 439
Query: 318 PNVKTYALLVECFTK 332
P+V ++ L+ + +
Sbjct: 440 PDVMSWTSLMGAYAQ 454
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 10/261 (3%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D DM G+ P +F ++ Y + A + A P T AL
Sbjct: 183 DTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAH 242
Query: 150 GSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+G + EI A ++ + + D+ + L+E R ++ A +VF + G+R
Sbjct: 243 AREGNCVRAEEIFAELQSVGFIPDV-YTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPD 301
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+++I +AG ++A + M+ AG T LLS A G +V A
Sbjct: 302 QVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAG--KVTEAERL 359
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
E +KPDT +N ++ AY + R+ ++ LL MV + P++ T L+
Sbjct: 360 VREIENSGVKPDTFMFNSLLSAYGNS---GRIDEMESLLESMVSSVAK--PDISTLNTLI 414
Query: 328 ECFTKYCAVTEAIRHFRALQN 348
+ + + +A F +L++
Sbjct: 415 NAYAQGGYIEKAEEVFNSLES 435
>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 638
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 126/315 (40%), Gaps = 16/315 (5%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ R +++ + GL+P +F+ L+ + +H + + + P
Sbjct: 274 CNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDI 333
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLR 198
T + F + + E+ A++ Y + L+ + LEDA+K++
Sbjct: 334 FTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFE 393
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G + Y+ +I CK G+ A+++ +M +G TT N L+ G
Sbjct: 394 MIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGR 453
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ A+ F M + D TYN +IQ + R + D+ + L K LQP
Sbjct: 454 TDEAYDFFREMPCKN--IVCDVITYNTLIQGFCREGKVLQSTDLLKEL-----QAKGLQP 506
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
+ +YA L++ + +V EA + + N G ++ + + LC +G
Sbjct: 507 STSSYAHLIQKLCQLGSVQEAKEMWNDMHN-RGLQPMVCTRDHI-------ISGLCEQGY 558
Query: 379 IIELLEALEAMAKDN 393
++E +E L M K N
Sbjct: 559 VVEGMEWLITMLKSN 573
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/417 (20%), Positives = 157/417 (37%), Gaps = 75/417 (17%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IALARL--FG------ 150
SP P S + G E A+++ AG RP ET A FG
Sbjct: 187 FSPEPASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIW 246
Query: 151 --SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G+ G++ +E + Y L++ + + A ++ + + GL +
Sbjct: 247 KLYEGMMETGVQKDVDIETVGY--------LIQAFCNDNKVSRAYEILRQSLEDGLTPCN 298
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+ ++ +I+ CK +H LE+ + M R F + +++ + AF F
Sbjct: 299 DAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNA 358
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
++ + PD Y +I + + +++D ++L M++ K PN +Y L+
Sbjct: 359 LK--DRGYAPDMVMYTTLIHGFCKM---GQLEDASKLWFEMID--KGFLPNEYSYNTLIY 411
Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTK-------------VLHNEGN-------------- 361
F K + EA++ ++ + + G K LH +
Sbjct: 412 GFCKIGNLDEAMKLYKKM--LDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNI 469
Query: 362 FGDPLSL--YLRALCREGRIIELLEAL-EAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL 418
D ++ ++ CREG++++ + L E AK QP L +K L S +
Sbjct: 470 VCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGS-----V 524
Query: 419 QEEAELGYEI------------DYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGF 463
QE E+ ++ D+I + E G E W+ K+ L P F
Sbjct: 525 QEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETF 581
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 150/340 (44%), Gaps = 29/340 (8%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-- 137
R DA V D +M + P +++ ++ + GD E + + G++P
Sbjct: 77 GRGGDAVEVFD---EMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNA 133
Query: 138 -LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF 196
+ L++ G G + L+ +A+ + + + IL + L RN + +F
Sbjct: 134 ITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGF--TYSILFDGLSRNGDSKAMLSLF 191
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ K G+ D +++ CK G S A E+ + AG + T +N L++
Sbjct: 192 GKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQT 251
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G E AF+TF M+ ++KPD TYN +I +AE QD L M ++D+ +
Sbjct: 252 GELEGAFSTFGQMK--SRHIKPDHITYNALINGLCKAERITNAQD----LLMEMQDNG-V 304
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 376
P V+T+ L++ + + + + +Q E G K N ++G + A C+
Sbjct: 305 NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ--ENGLK--PNVVSYGS----IVNAFCKN 356
Query: 377 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
G+I E + L+ M ++ V P A + Y ++ +++E
Sbjct: 357 GKIPEAVAILDDMF--HKDVLPNAQV----YNAIIDAYVE 390
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/305 (20%), Positives = 122/305 (40%), Gaps = 55/305 (18%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V+ ++ AGL P ++ L+ Y G+ EGA + + S ++P H T AL
Sbjct: 224 EVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNAL---- 279
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+ L + + + +A + + G+ T E
Sbjct: 280 ------------------------------INGLCKAERITNAQDLLMEMQDNGVNPTVE 309
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFEN 268
++ +I + G + EM+ G + +++ G IPE A A ++
Sbjct: 310 TFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPE-AVAILDD 368
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALL 326
M + +D + P+ + YN +I AY D+ ++VE K + P++ TY LL
Sbjct: 369 M-FHKDVL-PNAQVYNAIIDAYVEHGPNDQAF-------ILVEKMKSNGISPSIVTYNLL 419
Query: 327 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEAL 386
++ ++EA +L N+ +++ + ++ +S A C G I + L+
Sbjct: 420 IKGLCNQSQISEAEEIINSLSNH----RLIPDAVSYNTLIS----ACCYRGNIDKALDLQ 471
Query: 387 EAMAK 391
+ M K
Sbjct: 472 QRMHK 476
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 128/315 (40%), Gaps = 29/315 (9%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ +MI+ G+SP ++ L+ + + G A+ + + ++P T L F
Sbjct: 246 DLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAF 305
Query: 150 GSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
G +G + M K + Y+ LV+E+ NK A +F A+G
Sbjct: 306 CKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEV--NK----AKSIFNTMAQG 359
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ + Y +MI CK A+ + EM + ++ L+ + G A
Sbjct: 360 GVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYA 419
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ M + + P TYN ++ A + D+ A L ++D K +QPN+ T
Sbjct: 420 LQLVDQMH--DRGVPPTIRTYNSILDALCKIHQVDK----AIALLTKLKD-KGIQPNMYT 472
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL 382
Y++L++ + + +A + F L V D ++ ++ C EG E
Sbjct: 473 YSILIKGLCQSGKLEDARKVFEGLLVKGHNLNV--------DTYTIMIQGFCVEGLFNEA 524
Query: 383 LEALEAMAKDNQPVP 397
L L M +DN +P
Sbjct: 525 LALLSKM-EDNGCIP 538
>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 602
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 126/315 (40%), Gaps = 16/315 (5%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ R +++ + GL+P +F+ L+ + +H + + + P
Sbjct: 238 CNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDI 297
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLR 198
T + F + + E+ A++ Y + L+ + LEDA+K++
Sbjct: 298 FTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFE 357
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G + Y+ +I CK G+ A+++ +M +G TT N L+ G
Sbjct: 358 MIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGR 417
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ A+ F M + D TYN +IQ + R + D+ + L K LQP
Sbjct: 418 TDEAYDFFREMPCKN--IVCDVITYNTLIQGFCREGKVLQSTDLLKEL-----QAKGLQP 470
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
+ +YA L++ + +V EA + + N G ++ + + LC +G
Sbjct: 471 STSSYAHLIQKLCQLGSVQEAKEMWNDMHN-RGLQPMVCTRDHI-------ISGLCEQGY 522
Query: 379 IIELLEALEAMAKDN 393
++E +E L M K N
Sbjct: 523 VVEGMEWLITMLKSN 537
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 84/417 (20%), Positives = 157/417 (37%), Gaps = 75/417 (17%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IALARL--FG------ 150
SP P S + G E A+++ AG RP ET A FG
Sbjct: 151 FSPEPASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIW 210
Query: 151 --SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G+ G++ +E + Y L++ + + A ++ + + GL +
Sbjct: 211 KLYEGMMETGVQKDVDIETVGY--------LIQAFCNDNKVSRAYEILRQSLEDGLTPCN 262
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+ ++ +I+ CK +H LE+ + M R F + +++ + AF F
Sbjct: 263 DAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNA 322
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
++ + PD Y +I + + +++D ++L M++ K PN +Y L+
Sbjct: 323 LK--DRGYAPDMVMYTTLIHGFCKM---GQLEDASKLWFEMID--KGFLPNEYSYNTLIY 375
Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTK-------------VLHNEGN-------------- 361
F K + EA++ ++ + + G K LH +
Sbjct: 376 GFCKIGNLDEAMKLYKKM--LDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNI 433
Query: 362 FGDPLSL--YLRALCREGRIIELLEAL-EAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL 418
D ++ ++ CREG++++ + L E AK QP L +K L S +
Sbjct: 434 VCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGS-----V 488
Query: 419 QEEAELGYEI------------DYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGF 463
QE E+ ++ D+I + E G E W+ K+ L P F
Sbjct: 489 QEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETF 545
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 130/312 (41%), Gaps = 19/312 (6%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I + R+R+A + + +MI GL P P +++ L+ + GD E A
Sbjct: 281 ILINGFCMEKRSREAKLM---LLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEM 337
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILA-AMEKINYDIRQAWLILVEELVRNKYL 189
++ G+ L G K LEI+ MEK Q + +L+E R + +
Sbjct: 338 VACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNM 397
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
A ++ K L T Y ++I C+ G+ I EM G + L
Sbjct: 398 ARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTL 457
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
++ A G E + E M E + PD YN +I + +A+ R+++ L M
Sbjct: 458 MTAHAKEGRVEESRMILERMR--EQGILPDVFCYNSLIIGFCKAK---RMEEARTYLMEM 512
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 369
+E +RL+PN TY ++ ++K + A R+F + + VL N G + +
Sbjct: 513 LE--RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLS----CGVLPNVGIY----TAL 562
Query: 370 LRALCREGRIIE 381
+ C+EG + E
Sbjct: 563 IEGHCKEGNVTE 574
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 45/243 (18%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
+ +M+ L P ++ + Y+ G+ E A LS GV P AL
Sbjct: 509 LMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK 568
Query: 152 KGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+G T+ + + ++ D+ Q + +L+ L RN + +A +F + GL
Sbjct: 569 EGNVTEAFSVFRFILSRRVLQDV-QTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF 627
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y+ +I+ CK G+ A ++ EM G
Sbjct: 628 TYNSLISGSCKQGNVDKASQLLEEMCIKG------------------------------- 656
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ PD TYN +I +A +R +++ + + + + L PN TYA +V+
Sbjct: 657 ------INPDIVTYNILIDGLCKAGEIERAKNLFDDI-----EGRGLTPNCVTYAAMVDG 705
Query: 330 FTK 332
+ K
Sbjct: 706 YCK 708
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 25/238 (10%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++D M A + P ++ ++ A+ G+ + A L E+ R L E I L R
Sbjct: 211 VFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVL-LEMGEKARLLDEA-IELKRSMV 268
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
KGL + YDI L+ K +A + L GL+
Sbjct: 269 DKGLVP---------DLYTYDI------LINGFCMEKRSREAKLMLLEMIDVGLKPEPIT 313
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ +I + GD A I EM A G A +N LL+ G E A + M
Sbjct: 314 YNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM 373
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
E ++PD++TY+ +I+ + R ++ R ELL M ++L P V TY++++
Sbjct: 374 --EKGVEPDSQTYSLLIEGHCRGQNMAR---AFELLDEM--KKRKLAPTVLTYSVIIN 424
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 2/206 (0%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R ++ D+ GL+P ++ +V Y + + A L+ L GV P +
Sbjct: 679 RAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVIL 738
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+ K L++ M + + ++ L+E ++ L++AN + +
Sbjct: 739 NFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIP 798
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y +I +CKAG A + EM+ M T + LL G A F
Sbjct: 799 NHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALF 858
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTR 292
E M ++PD TY +I AY R
Sbjct: 859 EEMV--AKGIEPDKMTYYVMIDAYCR 882
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 141/345 (40%), Gaps = 31/345 (8%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R+ DV M++ G+ +++ L+ G E A LK ++ G +P T L
Sbjct: 265 RIKDV---MVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLI 321
Query: 147 RLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
+ + + LE+L MEK N ++ ++ L K L ANK+ + GL+
Sbjct: 322 EGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLK 381
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+Y +I G A + M +G F +N ++SC + G E A
Sbjct: 382 PNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 441
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+E +KPD T+ I Y++ ++ + A+ M+ DH L PN Y +
Sbjct: 442 L--LEIQGRGLKPDAVTFGAFILGYSKT---GKMTEAAKYFDEML-DHG-LMPNNPLYTV 494
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD--PLSLYLRALCREGRIIELL 383
L+ K + EA+ FR LH G D S ++ L + GR+ E L
Sbjct: 495 LINGHFKAGNLMEALSIFRH----------LHALGVLPDVQTCSAFIHGLLKNGRVQEAL 544
Query: 384 EALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEI 428
+ + K+ VP Y +L+S + + Q E E +E+
Sbjct: 545 KVFSEL-KEKGLVPD-----VFTYSSLISGFCK--QGEVEKAFEL 581
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 13/254 (5%)
Query: 97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156
A G+ P ++ + NG + A+ G+ P T +L F +G
Sbjct: 517 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 576
Query: 157 KGLEIL--AAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
K E+ ++ I +I + LV+ L ++ ++ A K+F + GL Y M
Sbjct: 577 KAFELHDEMCLKGIAPNIF-IYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 635
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF-ENMEYGE 273
I CK+ + + A + +EM + G +F +N L+ G E A F E ++ G
Sbjct: 636 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG- 694
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
T ++N +I Y ++ ++Q+ ++L M+ K++ P+ TY +++ K
Sbjct: 695 ---FATTLSFNTLIDGYCKS---CKIQEASQLFQEMIA--KQIMPDHVTYTTVIDWHCKA 746
Query: 334 CAVTEAIRHFRALQ 347
+ EA F+ +Q
Sbjct: 747 GKMEEANLLFKEMQ 760
Score = 42.7 bits (99), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 4/217 (1%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL-SAGVRPL 138
++ D R + M GL P ++ ++ Y ++ SL E+ S GV+P
Sbjct: 605 CKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC-KSENVAEAFSLFHEMPSKGVQPH 663
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
AL +G K + + M + + ++ L++ ++ +++A+++F
Sbjct: 664 SFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQE 723
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+ Y +I CKAG A + EM+ + T + L+ G
Sbjct: 724 MIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQ 783
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
FA FE M +KPD TY VI A+ + ++
Sbjct: 784 SSEVFALFEKMV--AKGVKPDEVTYGLVIYAHCKEDN 818
>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
Length = 1354
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 119/265 (44%), Gaps = 10/265 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V D+ G + ++ L+ AY G+ E A +L ++AG++P + FG
Sbjct: 657 VFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEAFG 716
Query: 151 SKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G A + E + ++ + ++++ RN LE+A ++ + + G + +
Sbjct: 717 RAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQ 776
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ ++A + +A E+ +++ AG +NH++S + G A F+ M
Sbjct: 777 VFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGM 836
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ E PD T+N +I Y+R + VQ+ LL M++ PN+ TY L+
Sbjct: 837 Q--EIGCSPDATTFNTLIMLYSRNQ---MVQEAQALLREMIKTGN--APNISTYTTLISA 889
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTK 354
+ + A +A F+++ E G K
Sbjct: 890 YGRLQAYEDAELVFKSIA--ETGCK 912
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 12/247 (4%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARL 148
+ ++ D+ AAGL P +++ L+ A +LN A+ + G P T A+ +
Sbjct: 170 SSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISV 229
Query: 149 FGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR-A 206
+G G I M++ + + ++ R+ +E+ ++ RG R +
Sbjct: 230 YGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERI--RGMMRDARCS 287
Query: 207 TDEI-YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+DEI Y+ MI KAG H A E+ +M+ GR + F L+ G A A
Sbjct: 288 SDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAM 347
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
FE+M + ++P + ++ +I AY +A D D M+ R P++ Y++
Sbjct: 348 FEDMLKSQ--VRPTLQAFSAMICAYAKA---DMFSDAEHTYSCMLRAGVR--PDLLAYSV 400
Query: 326 LVECFTK 332
+++ F K
Sbjct: 401 MLDVFFK 407
Score = 46.2 bits (108), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 110/299 (36%), Gaps = 19/299 (6%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
+F L ++R +++ D+ AGL ++ ++ Y+ G + A K
Sbjct: 777 VFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGM 836
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI-NYDIRQAWLILVEELVRNKYL 189
G P T L L+ + + +L M K N + L+ R +
Sbjct: 837 QEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAY 896
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
EDA VF A+ G + Y++MI KAG+H E+ +M+A G + + L
Sbjct: 897 EDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHML 956
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G A E + E M PD Y +I ++ + Y L +
Sbjct: 957 MDSYGKGGATGKAEEVLETLP--EIGMSPDAIHYTSIINSHLNNKDY---------LSAV 1005
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 368
+ K V+ + + CF +V E H L K L +E F PL L
Sbjct: 1006 IWLRKMTDACVRPTHVTITCFVGAASVCERSSHALML------LKAL-SEAGFSLPLRL 1057
Score = 42.7 bits (99), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 92/234 (39%), Gaps = 41/234 (17%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G++P R+F + A++ NG+ E A ++ AG P + AL L+
Sbjct: 735 GITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYS-------- 786
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
R+ I EELV++ K GL +IY+ MI+
Sbjct: 787 --------------RETVEIDAEELVKDI------------KKAGLELDMDIYNHMISLY 820
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
K G + A + M+ G FN L+ + + + A A M + P
Sbjct: 821 SKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGN--AP 878
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ TY +I AY R ++Y+ AEL+ + + +P+ Y +++ + K
Sbjct: 879 NISTYTTLISAYGRLQAYED----AELVFKSIAETG-CKPDATAYNVMINVYRK 927
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 97/253 (38%), Gaps = 48/253 (18%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP--LHET 141
+ P + ++D + + + ++ L+ Y +GD L R G RP +
Sbjct: 94 NQPGLAQELFDRAESSIGNCVQVYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFN 153
Query: 142 LIALARLFGS--KGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
++ AR G +GLA+ L+ D+ A
Sbjct: 154 IVIKARTRGGMQEGLASSLLQ----------DVYAA------------------------ 179
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
GLR Y+ +I+ S+A+ I EM+ G + +N ++S G
Sbjct: 180 ---GLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRV 236
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
E A + F M+ E PD TYN V+ A+ R R+++V + GMM + R +
Sbjct: 237 EAASSIFRIMQ--EQGFTPDAVTYNSVLHAFARD---GRIEEVERIRGMMRD--ARCSSD 289
Query: 320 VKTYALLVECFTK 332
TY ++ + K
Sbjct: 290 EITYNTMIHMYGK 302
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 130/312 (41%), Gaps = 19/312 (6%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I + R+R+A + + +MI GL P P +++ L+ + GD E A
Sbjct: 290 ILINGFCMEKRSREAKLM---LLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEM 346
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILA-AMEKINYDIRQAWLILVEELVRNKYL 189
++ G+ L G K LEI+ MEK Q + +L+E R + +
Sbjct: 347 VACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNM 406
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
A ++ K L T Y ++I C+ G+ I EM G + L
Sbjct: 407 ARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTL 466
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
++ A G E + E M E + PD YN +I + +A+ R+++ L M
Sbjct: 467 MTAHAKEGRVEESRMILERMR--EQGILPDVFCYNSLIIGFCKAK---RMEEARTYLMEM 521
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 369
+E +RL+PN TY ++ ++K + A R+F + + VL N G + +
Sbjct: 522 LE--RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLS----CGVLPNVGIY----TAL 571
Query: 370 LRALCREGRIIE 381
+ C+EG + E
Sbjct: 572 IEGHCKEGNVTE 583
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 45/243 (18%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
+ +M+ L P ++ + Y+ G+ E A LS GV P AL
Sbjct: 518 LMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK 577
Query: 152 KGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+G T+ + + ++ D+ Q + +L+ L RN + +A +F + GL
Sbjct: 578 EGNVTEAFSVFRFILSRRVLQDV-QTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF 636
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y+ +I+ CK G+ A ++ EM G
Sbjct: 637 TYNSLISGSCKQGNVDKASQLLEEMCIKG------------------------------- 665
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ PD TYN +I +A +R +++ + + + + L PN TYA +V+
Sbjct: 666 ------INPDIVTYNILIDGLCKAGEIERAKNLFDDI-----EGRGLTPNCVTYAAMVDG 714
Query: 330 FTK 332
+ K
Sbjct: 715 YCK 717
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 2/206 (0%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R ++ D+ GL+P ++ +V Y + + A L+ L GV P +
Sbjct: 688 RAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVIL 747
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+ K L++ M + + ++ L+E ++ L++AN + +
Sbjct: 748 NFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIP 807
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y +I +CKAG A + EM+ M T + LL G A F
Sbjct: 808 NHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALF 867
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTR 292
E M ++PD TY +I AY R
Sbjct: 868 EEMV--AKGIEPDKMTYYVMIDAYCR 891
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 145/327 (44%), Gaps = 22/327 (6%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M+AAG +P +F+G++ + + + E A + + +G +P + + L
Sbjct: 32 VLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLA 91
Query: 151 SKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G + L+IL+ M + QA+ LV L + + ++ A+ +F +GG
Sbjct: 92 KIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRL 151
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ +I C+AG +A E +M G +N LL + G E A F M
Sbjct: 152 MFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEM 211
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ PD TYN ++ A +A RV++ +L M PNV T++ L+
Sbjct: 212 K--SHSCSPDVVTYNTLLDAVCKAR---RVEEGCKLFEAM--RAAGYVPNVITFSTLIHG 264
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+ + +A+ F ++ E G K N+ + +S LCR ++I+ E E M
Sbjct: 265 LCRTGELEKALEVFGSM--LEAGCK--PNKYTYTTLIS----GLCRAEKVIQARELFEKM 316
Query: 390 AKDNQPVPPRAMILSRKYRTLVSSWIE 416
+ +PP A+ Y +L++ + +
Sbjct: 317 TQ--ACIPPDAV----AYNSLIAGYCK 337
Score = 43.1 bits (100), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 99/251 (39%), Gaps = 20/251 (7%)
Query: 158 GLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
G ++ AM Y + L+ L R LE A +VF + G + Y +I+
Sbjct: 239 GCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIS 298
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
C+A A E+ +M A +N L++ G + A + M G +
Sbjct: 299 GLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAG-L 357
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
+P T+N +I + + R ++ +G K L + TY +L+ ++ +
Sbjct: 358 QPTIVTFNTLIDGFCKLGKLGRANELVAEMGT-----KGLAADSCTYRILIAGLSRATKL 412
Query: 337 TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDNQ 394
EA+ ++ ++ K L DP+S ++ LC+ G I + EA K
Sbjct: 413 DEALEVYKQMRE----KKFLL------DPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGA 462
Query: 395 -PVPPRAMILS 404
P P ILS
Sbjct: 463 VPNPETFRILS 473
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 24/253 (9%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L+ L R +++ A + + K G+ T ++ +I C G A+E+ EM
Sbjct: 128 VLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRR 187
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G +N +++ G +A F+ ME ++ KPD TYN +I + + D
Sbjct: 188 GHEPNVISYNTIINGLCKTGNTSMAVDVFKKME--QNGCKPDVVTYNTIIDSLCK----D 241
Query: 298 R-VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 356
R V D E L M++ + + PNV TY +V F + EA R F+ + G V+
Sbjct: 242 RLVNDAMEFLSEMLD--RGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMV----GRDVM 295
Query: 357 HNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW-I 415
+ L++ + LC+EG + E E M + + V P Y L+ + +
Sbjct: 296 PDT----VTLTILVDGLCKEGMVSEARLVFETMTE--KGVEPNI----STYNALMDGYCL 345
Query: 416 EPLQEEAELGYEI 428
+ L EA+ +EI
Sbjct: 346 QRLMNEAKKVFEI 358
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 104/246 (42%), Gaps = 13/246 (5%)
Query: 88 VND---VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA 144
VND + +M+ G+ P +++ +V + + G A K + V P TL
Sbjct: 244 VNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTI 303
Query: 145 LARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGG 203
L +G+ ++ + M + + + L++ + + +A KVF + G
Sbjct: 304 LVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQG 363
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
Y+++I CK+ A + EM T ++ L+ G P+ A
Sbjct: 364 CAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEAL 423
Query: 264 ATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F+ M YG + P+ TY+ ++ + + + + + +LL M E K+L+PN+
Sbjct: 424 NIFKEMCSYG---LLPNLVTYSILLDGFCK---HGHLDEALKLLKSMQE--KKLEPNIVH 475
Query: 323 YALLVE 328
+ +L+E
Sbjct: 476 HTILIE 481
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 23/170 (13%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
IL+ L + +E A +V + + GL ++ ++ C+ GD + A +MEA
Sbjct: 362 ILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAV 421
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK--------PDTETYNCVIQA 289
G +N L+ F +NME E +K P+ ETYN +I
Sbjct: 422 GLRPNHVTYNSLVK----------KFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDG 471
Query: 290 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
Y R+ +DR + E + + K L+PNV +Y L+ C K + EA
Sbjct: 472 YGRSCLFDRCFQILEEM-----EKKGLKPNVISYGCLINCLCKDANILEA 516
Score = 47.0 bits (110), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 104/277 (37%), Gaps = 43/277 (15%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ +V+ + GL+P F+ +V Y GD A ++++ + G+RP H T +L
Sbjct: 375 KAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLV 434
Query: 147 RLF-----------------------------------GSKGLATKGLEILAAMEKINYD 171
+ F G L + +IL MEK
Sbjct: 435 KKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLK 494
Query: 172 IRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEI 230
++ L+ L ++ + +A + G+ +IY+++I C AG +A
Sbjct: 495 PNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRF 554
Query: 231 AYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 290
EM A + T +N L++ C +V A E + D TYN +I Y
Sbjct: 555 FDEMVAREIVPTLVTYNILIN--GLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGY 612
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
+ A VQ EL M ++P + TY L+
Sbjct: 613 SSA---GNVQKALELYETM--KKSGIKPTLNTYHRLI 644
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 135/329 (41%), Gaps = 30/329 (9%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R R R ++ MI G P R F+ L+ AY +GD+ A LK+ G +P +
Sbjct: 346 RKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYV 405
Query: 141 TL-IALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRN--------KYLED 191
I + + G++ L + L++L EK ++ A ++L + V N E
Sbjct: 406 VYNILIGGICGNEKLPS--LDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEK 463
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A + G Y +I C A NA + EM++ + F + L+
Sbjct: 464 AYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILID 523
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
G+ + A F+ M D P+ TY +I AY +A ++ EL MM+
Sbjct: 524 SFCKVGLLQQARKWFDEMV--RDGCAPNVVTYTALIHAYLKAR---KMSSANELFEMMLS 578
Query: 312 DHKRLQPNVKTYALLVE--C----FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365
+ PNV TY L++ C K C + +R + + + K+ ++GN DP
Sbjct: 579 EG--CIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKI--DDGNIRDP 634
Query: 366 ----LSLYLRALCREGRIIELLEALEAMA 390
+ LC+ ++ E + L+ M+
Sbjct: 635 NIFTYGALVDGLCKAHKVKEARDLLDVMS 663
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 135/329 (41%), Gaps = 30/329 (9%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R R R ++ MI G P R F+ L+ AY +GD+ A LK+ G +P +
Sbjct: 346 RKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYV 405
Query: 141 TL-IALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRN--------KYLED 191
I + + G++ L + L++L EK ++ A ++L + V N E
Sbjct: 406 VYNILIGGICGNEKLPS--LDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEK 463
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A + G Y +I C A NA + EM++ + F + L+
Sbjct: 464 AYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILID 523
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
G+ + A F+ M D P+ TY +I AY +A ++ EL MM+
Sbjct: 524 SFCKVGLLQQARKWFDEMV--RDGCAPNVVTYTALIHAYLKAR---KMSSANELFEMMLS 578
Query: 312 DHKRLQPNVKTYALLVE--C----FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365
+ PNV TY L++ C K C + +R + + + K+ ++GN DP
Sbjct: 579 EG--CIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKI--DDGNIRDP 634
Query: 366 ----LSLYLRALCREGRIIELLEALEAMA 390
+ LC+ ++ E + L+ M+
Sbjct: 635 NIFTYGALVDGLCKAHKVKEARDLLDVMS 663
>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 99/255 (38%), Gaps = 40/255 (15%)
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
K F G++ + Y++MI CK GD A + +M+ AG +N L+
Sbjct: 42 KFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGH 101
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
G+ + FE M+ + PD TYN +I + + ++R+ E L M +
Sbjct: 102 GKLGLLDECICIFEQMKDAD--CDPDVITYNALINCFCK---FERMPKAFEFLHEMKANG 156
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ---------NYEGGTKVLHNEGNFGD 364
L+PNV TY+ ++ F K + EAI+ F ++ Y GN +
Sbjct: 157 --LKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAE 214
Query: 365 PLSL------------------YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRK 406
L L L LC EGR+ E E AM N V P
Sbjct: 215 ALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAML--NAGVAPN----QET 268
Query: 407 YRTLVSSWIEPLQEE 421
Y LV +I+ + E
Sbjct: 269 YTALVHGFIKAKEME 283
>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 831
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 116/302 (38%), Gaps = 48/302 (15%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M AAG+ P S+ L+ AY + D GA+ ++ + GV P T + +G G
Sbjct: 218 MRAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLG- 276
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
D+ E A + F R D IY+ +
Sbjct: 277 ----------------DV-----------------EAAERWFQRALSENWHHNDVIYNNI 303
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY-GE 273
I CKAG+ A I ME G AT +N L+ C + F ++ E
Sbjct: 304 IHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTE 363
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
+ P +Y C+I Y++ D+ ++ + ED + ++ N KTY+++++ + +
Sbjct: 364 TGLSPTVVSYGCLINLYSKLGKMDKALQISNEM----ED-QGIKHNRKTYSMIIDGYVQL 418
Query: 334 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393
A F + N G K G ++ + A C+ G++ LE L M +
Sbjct: 419 GDTANAFSVFEDMSN--AGIKPD------GITYNILMNAFCKNGQMNRALELLARMESGD 470
Query: 394 QP 395
P
Sbjct: 471 CP 472
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 119/292 (40%), Gaps = 24/292 (8%)
Query: 127 LKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELV 184
LK G+ P + L L+ G K L+I ME I ++ R+ + ++++ V
Sbjct: 358 LKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHN-RKTYSMIIDGYV 416
Query: 185 RNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTF 244
+ +A VF + G++ Y++++ CK G + ALE+ ME+ T
Sbjct: 417 QLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLR 476
Query: 245 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
+ ++ G +AF T +M+ +P TYN ++ +A DR A
Sbjct: 477 TYTIIIDGFMKIGDLRMAFETVRDMKMAG--FRPSAATYNVIMHGLAQAGQMDR---AAS 531
Query: 305 LLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 364
++ MV + PN ++Y L+E + + A ++F ++ V+
Sbjct: 532 IIDEMVV--AGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVI-------- 581
Query: 365 PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
+ L+A C+ GR+ L MA P+ + Y L+ W +
Sbjct: 582 AYASLLKACCKAGRMQSTLAITAEMAAAGVPMN------NYIYNILLDGWAQ 627
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 3/204 (1%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R +I +M+ AG+ P RS+ L+ Y GD A R G++P +L
Sbjct: 528 RAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLL 587
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
+ G L I A M + + IL++ + + +A+ + + GL
Sbjct: 588 KACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHEGLT 647
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y I CKAGD A E +M+ G + L+ A+ PE A
Sbjct: 648 PDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALIC 707
Query: 266 FENMEYGEDYMKPDTETYNCVIQA 289
++ M+ M PD Y+C++ +
Sbjct: 708 YDEMKSAG--MIPDKPLYHCIMTS 729
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 128/331 (38%), Gaps = 55/331 (16%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
D V DM AG+ P +++ L+ A+ NG A+ L R S P T
Sbjct: 420 DTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYT 479
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
+ F G D+R A+ E VR+ + G
Sbjct: 480 IIIDGFMKIG-----------------DLRMAF-----ETVRDMKM------------AG 505
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
R + Y++++ +AG A I EM AG + L+ A G +AF
Sbjct: 506 FRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAF 565
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
F ++ E +KPD Y +++A +A R+Q + M + N Y
Sbjct: 566 KYFNRIK--EVGLKPDVIAYASLLKACCKA---GRMQSTLAITAEMAA--AGVPMNNYIY 618
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELL 383
+L++ + + + EA + ++ +EG T +H+ +F + A C+ G +++
Sbjct: 619 NILLDGWAQRGDMWEASDIMQKMR-HEGLTPDIHSYTSF-------INACCKAGDMLKAT 670
Query: 384 EALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
E +E M + Q V P + Y TL+ W
Sbjct: 671 ETIEQMKQ--QGVQPNL----QAYTTLIHGW 695
>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic [Vitis vinifera]
Length = 869
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 13/262 (4%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ ++ +M + G++P SF L+ AY NG ++ ++ L R V P T +
Sbjct: 164 KCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVI 223
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLI----LVEELVRNKYLEDANKVFLRGAKG 202
GL + E+L ++ ++ QA ++ L+ R ++A VF +G
Sbjct: 224 NSCARGGLDWE--ELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEG 281
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ Y ++ K E+ EME+ G +N LL A G + A
Sbjct: 282 GILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEA 341
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F M+ G + P+ TY+ ++ Y R YD V+D+ L M V + +PN T
Sbjct: 342 MGVFRQMQ-GAGCV-PNAATYSILLNLYGRHGRYDDVRDL--FLEMKVSN---TEPNAAT 394
Query: 323 YALLVECFTKYCAVTEAIRHFR 344
Y +L+ F + E + F
Sbjct: 395 YNILINVFGEGGYFKEVVTLFH 416
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 108/258 (41%), Gaps = 8/258 (3%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+V++++ +M + G P S++ L+ A+ +G + AM ++ AG P T L
Sbjct: 305 KVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILL 364
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
L+G G ++ M+ N + A + IL+ Y ++ +F + +
Sbjct: 365 NLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVE 424
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
E Y+ +I K G H +A +I M G + ++ + ++ + E A
Sbjct: 425 PNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVA 484
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
F M E KP ETYN +IQ + + Y + + +G + N T+
Sbjct: 485 FNTMN--EVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMG-----QSGVARNRDTFNG 537
Query: 326 LVECFTKYCAVTEAIRHF 343
++E F + EAI+ +
Sbjct: 538 VIEAFRQGGQFEEAIKAY 555
Score = 42.7 bits (99), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 44/236 (18%), Positives = 91/236 (38%), Gaps = 15/236 (6%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V + +DM+ + P ++ GL+ A G HE A L GV P + +
Sbjct: 411 VVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIE 470
Query: 148 LFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+G L + L M ++ + + L++ + +++ + L+ + G+
Sbjct: 471 AYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVAR 530
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
+ ++ +I + G A++ EME A +LS G+ E + F
Sbjct: 531 NRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQF 590
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYD------------RVQDVAELLGMMV 310
E + P Y ++ Y +A+ +D RV ++ +++G M+
Sbjct: 591 G--EIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMI 644
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ + IY +MI + G EI EM + G + F F L++ G + +
Sbjct: 143 KPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLE 202
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTY 323
+ M+ ++ + P TYN VI + R D ELLG+ + H+ +Q ++ TY
Sbjct: 203 LLDRMK--KERVSPSILTYNTVINSCARGG-----LDWEELLGLFAQMRHEGIQADIVTY 255
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGG 352
L+ + EA FR + EGG
Sbjct: 256 NTLLSACARRGLGDEAEMVFRTMN--EGG 282
>gi|413939576|gb|AFW74127.1| hypothetical protein ZEAMMB73_460696 [Zea mays]
Length = 581
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 15/216 (6%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A L+ L R + A +VF A+ GL AT +Y+ M+ KAGD + A I
Sbjct: 144 HACTALLTALARARMTATARRVFDEMARAGLAATTHVYNAMLHVCLKAGDAAQAEAIVTR 203
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+AAG F +N +++ G+ A + M+ ++ ++PDT T+N I +
Sbjct: 204 MDAAGVTLDRFSYNTVIALYCRKGMGYEAMCARDRMD--KEGIRPDTVTWNSSIHGLCKE 261
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
RV++ A+L MV + P+ TY L++ + + V EA++ L+
Sbjct: 262 ---GRVKEAAQLFTEMVA--AQATPDNVTYTTLIDGYCRAGNVEEAVK----LRGRMEAA 312
Query: 354 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+L + + LR LC +G + E+ L M
Sbjct: 313 GMLPGVATY----NAILRKLCEDGNMKEVHRLLHEM 344
Score = 40.0 bits (92), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 108/260 (41%), Gaps = 20/260 (7%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV---R 136
AR R V +M AGL+ ++ ++ GD A + R +AGV R
Sbjct: 154 ARARMTATARRVFDEMARAGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDR 213
Query: 137 PLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQ---AWLILVEELVRNKYLEDA 192
+ T+IAL + KG+ G E + A ++++ + IR W + L + +++A
Sbjct: 214 FSYNTVIAL---YCRKGM---GYEAMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEA 267
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
++F + Y +I C+AG+ A+++ MEAAG + +N +L
Sbjct: 268 AQLFTEMVAAQATPDNVTYTTLIDGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRK 327
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G + M+ + ++ D T N +I AY + V + M+E
Sbjct: 328 LCEDGNMKEVHRLLHEMDGRK--VQADHVTCNTLINAYCKRGDMTSACKVKK---KMMES 382
Query: 313 HKRLQPNVKTYALLVECFTK 332
LQ N TY L+ F K
Sbjct: 383 G--LQLNHFTYKALIHGFCK 400
>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic [Vitis vinifera]
Length = 929
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/352 (20%), Positives = 136/352 (38%), Gaps = 34/352 (9%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ + H + + + ++ +M G+ +H ++ YT+ G+ E + R
Sbjct: 395 IIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDR 454
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME--KINYDIRQAWLILVEELVRNK 187
G P + L L+ G +K LE+ ME I ++++ + +L+ VR K
Sbjct: 455 LKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMK-TYSMLINGFVRLK 513
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+A VF K GL+ +Y+ +I C G+ A+ EM+ TT F
Sbjct: 514 DWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFM 573
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ A G A F+ M + P T+N +I ++ ++ + +
Sbjct: 574 PIIHGFARSGDMRRALEIFDMMRWSG--CIPTVHTFNALILGLVEKCQMEKAVEILDEMS 631
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
+ + PN TY ++ + +A +F L+ G L
Sbjct: 632 L-----AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTE-------------GLELD 673
Query: 368 LY-----LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
+Y L+A C+ GR+ L M+ +Q +P + Y L+ W
Sbjct: 674 VYTYEALLKACCKSGRMQSALAVTREMS--SQKIPRNTFV----YNILIDGW 719
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 104/277 (37%), Gaps = 41/277 (14%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
FM + AR+ D R ++ M +G P +F+ L++ E A+ L
Sbjct: 572 FMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMS 631
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLED 191
AG+ P T + + S G K E
Sbjct: 632 LAGISPNEHTYTTIMHGYASLGDTGKAFE------------------------------- 660
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
F + GL Y+ ++ CK+G +AL + EM + TF +N L+
Sbjct: 661 ---YFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILID 717
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
A G A + M+ ++ ++PD TY I A +A R + + ++
Sbjct: 718 GWARRGDVWEAAELMQQMK--QEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVV-- 773
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
++PN+KTY L+ + + +A++ F+ +++
Sbjct: 774 ---GVKPNIKTYTTLIHGWARASLPEKALKCFQEMKS 807
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 5/202 (2%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+++ +M AG+SP ++ ++ Y GD A + + G+ T AL +
Sbjct: 625 EILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKAC 684
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G L + M +KI + + IL++ R + +A ++ + + G++
Sbjct: 685 CKSGRMQSALAVTREMSSQKIPRNTF-VYNILIDGWARRGDVWEAAELMQQMKQEGVQPD 743
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y I CKAGD A + EME G + L+ A +PE A F+
Sbjct: 744 IHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQ 803
Query: 268 NMEYGEDYMKPDTETYNCVIQA 289
M+ +KPD Y+C++ +
Sbjct: 804 EMKSAG--LKPDKAVYHCLMTS 823
>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g09680
gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 607
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 5/225 (2%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+IF + H+RN + + + M++ GL P ++ LV + NGD A + +
Sbjct: 346 VIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDG 405
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKY 188
+ G+RP T L F G LEI M++ ++ R + LV + +
Sbjct: 406 MIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGR 465
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+ DA + + G++ D Y +M+ CK GD ++ EM++ G + + +N
Sbjct: 466 VIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNV 525
Query: 249 LLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTR 292
LL+ G + A + M G + PD TYN +++ + R
Sbjct: 526 LLNGLCKLGQMKNADMLLDAMLNIG---VVPDDITYNTLLEGHHR 567
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+EIL A +N + + IL+ + + + DA KVF K L+ T ++ +I
Sbjct: 229 MEILDAGFPLNVYV---FNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGY 285
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
CK G+ + ++ME + F ++ L++ + A F+ M + + P
Sbjct: 286 CKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEM--CKRGLIP 343
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ + +I ++R D +++ + + K LQP++ Y LV F K
Sbjct: 344 NDVIFTTLIHGHSRNGEIDLMKESYQKML-----SKGLQPDIVLYNTLVNGFCK 392
>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
Length = 793
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 115/287 (40%), Gaps = 39/287 (13%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R R +N ++ +M+ G P +++ L+ +Y A+ R AG +P
Sbjct: 399 GRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDR 458
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T L + G L + M++ + + +++ L + +L A+K+F
Sbjct: 459 VTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCE 518
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G Y++MIA KA ++ ALE+ +M+ AG ++ ++ CG
Sbjct: 519 MVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGH 578
Query: 259 PEVAFATFENME----------YG----------------EDY-------MKPDTETYNC 285
E A A F M+ YG E Y + P+ T N
Sbjct: 579 LEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNS 638
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
++ A+ R R+ D LL M+ LQP+++TY LL+ C T+
Sbjct: 639 LLSAFLRVH---RLSDAYNLLQSMLR--LGLQPSLQTYTLLLSCCTE 680
Score = 46.2 bits (108), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 7/175 (4%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ +V L R + NK+ + G + Y+ +I +A + A+ +
Sbjct: 389 HTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDR 448
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+ AG + L+ A G +VA ++ M+ E ++ PDT TY+ +I +A
Sbjct: 449 MQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQ--EAHLSPDTFTYSVIINCLGKA 506
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
+ +L MV+ + PN+ TY +++ K A+ +R +QN
Sbjct: 507 ---GHLTSAHKLFCEMVD--QGCVPNLVTYNIMIALQAKARNYPTALELYRDMQN 556
>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
[Vitis vinifera]
Length = 875
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 115/287 (40%), Gaps = 39/287 (13%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R R +N ++ +M+ G P +++ L+ +Y A+ R AG +P
Sbjct: 390 GRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDR 449
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T L + G L + M++ + + +++ L + +L A+K+F
Sbjct: 450 VTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCE 509
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G Y++MIA KA ++ ALE+ +M+ AG ++ ++ CG
Sbjct: 510 MVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGH 569
Query: 259 PEVAFATFENME----------YG----------------EDY-------MKPDTETYNC 285
E A A F M+ YG E Y + P+ T N
Sbjct: 570 LEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNS 629
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
++ A+ R R+ D LL M+ LQP+++TY LL+ C T+
Sbjct: 630 LLSAFLRVH---RLSDAYNLLQSMLR--LGLQPSLQTYTLLLSCCTE 671
Score = 46.6 bits (109), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 7/175 (4%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ +V L R + NK+ + G + Y+ +I +A + A+ +
Sbjct: 380 HTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDR 439
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+ AG + L+ A G +VA ++ M+ E ++ PDT TY+ +I +A
Sbjct: 440 MQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQ--EAHLSPDTFTYSVIINCLGKA 497
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
+ +L MV+ + PN+ TY +++ K A+ +R +QN
Sbjct: 498 ---GHLTSAHKLFCEMVD--QGCVPNLVTYNIMIALQAKARNYPTALELYRDMQN 547
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 134/329 (40%), Gaps = 37/329 (11%)
Query: 118 GDHEGAMHSLKRELSAGVRPLHETLIALAR-LFGSKGLATKGLEILAAMEKINYDIRQAW 176
G H +++ L+ +S G +P L + F S+ L K + ++ +E ++
Sbjct: 76 GKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLK-KAMRVMEILETYGDPDVYSY 134
Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
++ + ++ AN+VF R G Y++MI C G A E+ E+
Sbjct: 135 NAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLK 194
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
G + + L+ G A F+ E ++PD TYN +I+ +
Sbjct: 195 DGCKPSVITYTILIEATILEGRINEALELFD--ELVSRGLRPDLYTYNAIIRGICKEGME 252
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 356
DR D L + P+V +Y +L +R F +E G +++
Sbjct: 253 DRALDFVRHLS-----ARGCNPDVVSYNIL-------------LRSFLNKSRWEDGERLM 294
Query: 357 HNEGNFG-DP----LSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV 411
+ G +P S+ + + CREGR+ E + LE M K+ P S Y L+
Sbjct: 295 KDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVM-KEKGLTPD-----SYSYDPLI 348
Query: 412 SSWIEPLQEEAELGYEIDYIARYISEGGL 440
S++ +E L I+Y+ + +S+G L
Sbjct: 349 SAFC----KEGRLDLAIEYLEKMVSDGCL 373
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/339 (19%), Positives = 131/339 (38%), Gaps = 53/339 (15%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V+ +++ G P ++ L+ A L G A+ +S G+RP T A+ R
Sbjct: 187 EVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGI 246
Query: 150 GSKGLATKGLEILAAM-------EKINYDI-------RQAW------------------- 176
+G+ + L+ + + + ++Y+I + W
Sbjct: 247 CKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNV 306
Query: 177 ---LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
IL+ R + +A V + GL YD +I+ CK G A+E +
Sbjct: 307 VTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEK 366
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA-YTR 292
M + G + ++N +L+ G ++A FE ++ E P YN + A ++
Sbjct: 367 MVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLD--EVGCPPTVRAYNTMFSALWSC 424
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
++ ++E++ K + P+ TY L+ C + V EAI ++
Sbjct: 425 GNKIKALEMISEMI------RKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQ 478
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391
V+ ++ L +C+ R+ E +E L M +
Sbjct: 479 PTVIS--------FNIVLLGMCKAHRVFEGIELLITMVE 509
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 129/299 (43%), Gaps = 26/299 (8%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G P +++ L+ + +G E A+ + L+ G+ P T AL +G
Sbjct: 337 GCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETA 396
Query: 159 LEILAAMEKINYDI---RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
L I M +++D + + ++++ Y++ A +F + K G Y+++I
Sbjct: 397 LTIFEWM--LSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIII 454
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGED 274
K G +NA+ + M+ G T+ + +L+S + G E AF+ F M E+G
Sbjct: 455 HIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHG-- 512
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
+ P+ TYN +I Y +V D L MVE P+ TY +++ F+K
Sbjct: 513 -ISPNVVTYNAIINGYLTVA---KVDDALALFWKMVESGN--VPSSGTYNMMISGFSKTN 566
Query: 335 AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAMAK 391
++EA +N+ G + +G + ++ ++ LC+ GR + M K
Sbjct: 567 RISEA-------ENFCGK---MVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKK 615
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 84/364 (23%), Positives = 140/364 (38%), Gaps = 49/364 (13%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V + M+A GL P ++ L+ + G E A+ + LS P ET + + F
Sbjct: 364 VYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFC 423
Query: 151 SKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
S G K I M K I Y+I ++ + Y+ +A ++ G
Sbjct: 424 SIGYIQKATAIFDQMLKAGPSPNVITYNI------IIHIYFKQGYMNNAMRLLEMMKGNG 477
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
L+ Y +I+ + G +A + EM G +N +++ T + A
Sbjct: 478 LKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDAL 537
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
A F M E P + TYN +I +++ +R+ + G MV+ + L PNV TY
Sbjct: 538 ALFWKMV--ESGNVPSSGTYNMMISGFSKT---NRISEAENFCGKMVK--QGLLPNVITY 590
Query: 324 ALLVECFTKYCAVTEAIR---------HFRALQNYEGGTKVLHNEGNFGDP--------- 365
++ K + A + +F L Y L EG D
Sbjct: 591 TSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCE 650
Query: 366 -----LSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQE 420
+ +R LC +GR E + +E+M K + + P I YR L+ + L+
Sbjct: 651 PNVDTYTTLVRGLCGKGRCYEADQLVESMKK--KGLQPSEEI----YRALLVGQCKNLEV 704
Query: 421 EAEL 424
E+ L
Sbjct: 705 ESAL 708
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 97/256 (37%), Gaps = 10/256 (3%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV +M+ +G+ P +F+ ++ G + A + G P T +L
Sbjct: 188 DVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGH 247
Query: 150 GSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G E+ M K D + L+ L LE+A + G+ T
Sbjct: 248 CKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTV 307
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y + I C AG A+++ +M+ G + L+S + G EVA +
Sbjct: 308 HAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHK 367
Query: 269 MEYGEDYMKPDTETYNCVI-QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M D + P TY+ +I Q Y R + + M+ H L PN +TY +++
Sbjct: 368 ML--ADGLVPTAVTYSALINQLYVEG----RFETALTIFEWMLS-HDSL-PNTETYNVII 419
Query: 328 ECFTKYCAVTEAIRHF 343
+ F + +A F
Sbjct: 420 KGFCSIGYIQKATAIF 435
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 135/341 (39%), Gaps = 58/341 (17%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARL 148
N+V+ +M + G +P F+ L+ Y GD A+ G++P T L +
Sbjct: 345 NEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQG 404
Query: 149 FGSKGLATKG----LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
F + + IL++ +N D+ ++ L+ A K+ + G +
Sbjct: 405 FCRSNQMEQAEQVLVYILSSGLSVNMDVCS---YVIHRLMERSGFVSALKIVTKLLSGNI 461
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA-GRMATTFHFNHLLSCQATCGIPEVAF 263
R +D + ++ CK HS A+E+ +++ A G A T N LL G E F
Sbjct: 462 RVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVF 521
Query: 264 ATFENM---------------------------------EYGEDYMKPDTETYNCVIQAY 290
+ M E + +PDT TYN +++
Sbjct: 522 EVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGL 581
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
++ DV LL E PNV TYALL+E + K + +A++ F+ L +YE
Sbjct: 582 A---DMGKIDDVHRLLHEAKE--YGFVPNVYTYALLLEGYCKADRIEDAVKFFKNL-DYE 635
Query: 351 GG--TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+ V++N + + A CR G + E + +AM
Sbjct: 636 KVELSSVVYN---------ILIAAYCRIGNVTEAFKLRDAM 667
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ +L+E + +EDA K F + + +Y+++IA C+ G+ + A ++ M
Sbjct: 608 TYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAM 667
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
++ G + T ++ L+ G + A FE M + + P+ Y +I + +
Sbjct: 668 KSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMR--NEGLLPNVFCYTALIGGHCKLG 725
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
D V + LL M ++PN TY ++++ + K + EA
Sbjct: 726 QMDIVGSI--LLEM---SSNGIRPNKITYTIMIDGYCKLGNMKEA 765
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 106/250 (42%), Gaps = 23/250 (9%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L ++K LE+A +F +GG+ Y ++ KAG + ALE+ Y M+ AG
Sbjct: 306 LLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAG 365
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
M T +N L+SC G + A E+M + PD TYN VI + Y++
Sbjct: 366 CMPDTVVYNVLISCLGKQGKVDEALELLEDMN--RKGIMPDCRTYNIVIDVLSSCGRYEK 423
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
GMM ++ P+V TY L+ K EA F +Q K + +
Sbjct: 424 AY---SFFGMM--KRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQ----ANKCMPD 474
Query: 359 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL 418
FG + L + GR+ + LE + K P + I Y L+S +
Sbjct: 475 LTTFGTLID----TLAKAGRMEDALEQSARLVKMGH--APNSYI----YNALISGFCRSG 524
Query: 419 QEEAELGYEI 428
Q + GYE+
Sbjct: 525 Q--VDKGYEL 532
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 135/329 (41%), Gaps = 30/329 (9%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R R R ++ MI G P R F+ L+ AY +GD+ A LK+ G +P +
Sbjct: 346 RKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYV 405
Query: 141 TL-IALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRN--------KYLED 191
I + + G++ L + L++L EK ++ A ++L + V N E
Sbjct: 406 VYNILIGGICGNEKLPS--LDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEK 463
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A + G Y +I C A NA + EM++ + F + L+
Sbjct: 464 AYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILID 523
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
G+ + A F+ M D P+ TY +I AY +A ++ EL MM+
Sbjct: 524 SFCKVGLLQQARKWFDEMV--RDGCAPNVVTYTALIHAYLKAR---KMSSANELFEMMLS 578
Query: 312 DHKRLQPNVKTYALLVE--C----FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365
+ PNV TY L++ C K C + +R + + + K+ ++GN DP
Sbjct: 579 EG--CIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKI--DDGNIRDP 634
Query: 366 ----LSLYLRALCREGRIIELLEALEAMA 390
+ LC+ ++ E + L+ M+
Sbjct: 635 NIFTYGALVDGLCKAHKVKEARDLLDVMS 663
>gi|302776756|ref|XP_002971525.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
gi|300160657|gb|EFJ27274.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
Length = 356
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 112/269 (41%), Gaps = 45/269 (16%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+V +VI +MI L P SF+ L+ AY ++ E + +AGV P T L
Sbjct: 116 KVEEVIREMIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLI 175
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
++F + + +E+ EE+V NK D F
Sbjct: 176 QMFSRSAMHKEAIEMF------------------EEMVVNKCQPD----FF--------- 204
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
+Y L+++ KAG ++AL I + ++ G + L+S G+ E + F
Sbjct: 205 ---VYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHF 261
Query: 267 ENME-YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
ME YG + D N +I AY +A V D A LL + + + PN +YA+
Sbjct: 262 SQMEAYG---CRADVHLLNTMIDAYAKA---GMVNDAANLLHRLTA--QGVCPNRASYAI 313
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTK 354
+VE F V EA+ + ++ E G K
Sbjct: 314 IVEGFLHAGHVDEALAAYASMS--EAGFK 340
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
ILV +N Y D ++FL G+ T Y+++I K G E+ EM
Sbjct: 70 ILVSGSGKNGYPID--RLFLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQ 127
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
F FN L++ A PE F NM+ + PD TY +IQ ++R+ +
Sbjct: 128 ELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAG--VLPDIVTYTTLIQMFSRSAMH- 184
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
++ E+ MV + + QP+ Y+LLV + K V +A+ F LQ
Sbjct: 185 --KEAIEMFEEMVVN--KCQPDFFVYSLLVSVYGKAGLVADALLIFHRLQ 230
>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g04760, chloroplastic-like [Glycine max]
Length = 531
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 104/250 (41%), Gaps = 21/250 (8%)
Query: 145 LARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGG 203
L R ++G G E+++ M + + +L+ L R+ +E+ + K G
Sbjct: 234 LLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKG 293
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
L YD +IA CK G A+E+ M + G + ++N +L+C + A
Sbjct: 294 LEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEAL 353
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+ FE + GE P+ +YN V A + R LGM++E + P+V Y
Sbjct: 354 SIFEKL--GEVGCSPNASSYNTVFSALGSSGHKVRA------LGMILEMLDXVDPDVIAY 405
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRALCREGRII 380
L+ C + V EAI ++ K V +N + L LCR GR+
Sbjct: 406 NSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYN---------IVLLGLCRVGRVS 456
Query: 381 ELLEALEAMA 390
+ E L AM
Sbjct: 457 DATEVLAAMV 466
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 141/345 (40%), Gaps = 31/345 (8%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R+ DV M++ G+ +++ L+ G E A LK ++ G +P T L
Sbjct: 66 RIKDV---MVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLI 122
Query: 147 RLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
+ + + LE+L MEK N ++ ++ L K L ANK+ + GL+
Sbjct: 123 EGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLK 182
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+Y +I G A + M +G F +N ++SC + G E A
Sbjct: 183 PNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 242
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+E +KPD T+ I Y++ ++ + A+ M+ DH L PN Y +
Sbjct: 243 L--LEIQGRGLKPDAVTFGAFILGYSKT---GKMTEAAKYFDEML-DHG-LMPNNPLYTV 295
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD--PLSLYLRALCREGRIIELL 383
L+ K + EA+ FR LH G D S ++ L + GR+ E L
Sbjct: 296 LINGHFKAGNLMEALSIFRH----------LHALGVLPDVQTCSAFIHGLLKNGRVQEAL 345
Query: 384 EALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEI 428
+ + K+ VP Y +L+S + + Q E E +E+
Sbjct: 346 KVFSEL-KEKGLVPD-----VFTYSSLISGFCK--QGEVEKAFEL 382
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 13/254 (5%)
Query: 97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156
A G+ P ++ + NG + A+ G+ P T +L F +G
Sbjct: 318 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 377
Query: 157 KGLEIL--AAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
K E+ ++ I +I + LV+ L ++ ++ A K+F + GL Y M
Sbjct: 378 KAFELHDEMCLKGIAPNIF-IYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 436
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF-ENMEYGE 273
I CK+ + + A + +EM + G +F +N L+ G E A F E ++ G
Sbjct: 437 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG- 495
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
T ++N +I Y ++ ++Q+ ++L M+ K++ P+ TY +++ K
Sbjct: 496 ---FATTLSFNTLIDGYCKS---CKIQEASQLFQEMIA--KQIMPDHVTYTTVIDWHCKA 547
Query: 334 CAVTEAIRHFRALQ 347
+ EA F+ +Q
Sbjct: 548 GKMEEANLLFKEMQ 561
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 124/325 (38%), Gaps = 56/325 (17%)
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
+ K F G++ + Y++MI CK GD A + +M+ AG +N L+
Sbjct: 239 SRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLID 298
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
G+ + FE M+ + PD TYN +I + + ++R+ E L M
Sbjct: 299 GHGKLGLLDECICIFEQMKDAD--CDPDVITYNALINCFCK---FERMPKAFEFLHEMKA 353
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ---------NYEGGTKVLHNEGNF 362
+ L+PNV TY+ ++ F K + EAI+ F ++ Y GN
Sbjct: 354 NG--LKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNL 411
Query: 363 GDPLSL------------------YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILS 404
+ L L L LC EGR+ E E AM N V P
Sbjct: 412 AEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAML--NAGVAPN----Q 465
Query: 405 RKYRTLVSSWIEP---------LQEEAELGYEIDYIARYISEGGLTGER-----KRWVPR 450
Y LV +I+ L+E E + D + GL E K +
Sbjct: 466 ETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGE 525
Query: 451 RGKTPLDPDAVGFIYSNPMETSFKQ 475
++ ++ +AV IY+ M+ FK
Sbjct: 526 IKESGINTNAV--IYTTLMDAYFKS 548
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 12/215 (5%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ LV L R K + + + G++ +++ MI +G A++I +M
Sbjct: 80 TYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKM 139
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G TT FN L+ G P A E M + +KP+ TYN +IQA+
Sbjct: 140 KECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLE-MMIQDGNVKPNERTYNILIQAWC--- 195
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354
+ + +++ ++ MV + +QP++ TY L F + A R +Q Y K
Sbjct: 196 TKNELEEAWNVMHKMV--NSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNN--K 251
Query: 355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
V NE G + +R C+EG + E L L M
Sbjct: 252 VKPNERTCG----IIIRGYCKEGNMTEALRFLYKM 282
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 112/277 (40%), Gaps = 54/277 (19%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P F+ ++ A++ +G AM ++ G +P T L + FG G +
Sbjct: 108 GVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEA 167
Query: 159 LEILAAM---------EKINYDIRQAWLI----------------------------LVE 181
+++L M E+ + QAW L
Sbjct: 168 MKLLEMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLAR 227
Query: 182 ELVRNKYLEDANKVFLRGAK--GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR 239
+N ++A ++ L+ + ++ + ++I CK G+ + AL Y+M+ G
Sbjct: 228 AFAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGV 287
Query: 240 MATTFHFNHL----LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
FN L L T G+ E A E E+G +KPD TY+ ++ A++ +
Sbjct: 288 HPNPVVFNSLIKGYLDITDTDGVEE-ALTLME--EFG---IKPDVVTYSTIMNAWSSSGL 341
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
D + E+ MV+ ++P+++ Y++L + + +
Sbjct: 342 MDNCE---EIFDDMVK--AEIEPDIQAYSILAKGYVR 373
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 3/149 (2%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
+Y M G+ P P F+ L+ Y D +G +L G++P T + + S
Sbjct: 279 LYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSS 338
Query: 152 KGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
GL EI M K I DI QA+ IL + VR + A + K GL+A
Sbjct: 339 SGLMDNCEEIFDDMVKAEIEPDI-QAYSILAKGYVRAGQPDKAEALLNSMTKYGLQANVV 397
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
I+ +I+ C AG AL + +M G
Sbjct: 398 IFTTIISGWCAAGKMDCALRLYEKMNEMG 426
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 122/278 (43%), Gaps = 24/278 (8%)
Query: 95 MIAAG-LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
MI G + P R+++ L+ A+ + E A + + + +++G++P T LAR F G
Sbjct: 174 MIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNG 233
Query: 154 LATKGLEILAAMEKINYDIR---QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
++ M++ N ++ + I++ + + +A + + + G+ +
Sbjct: 234 ETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVV 293
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
++ +I D E ME G ++ +++ ++ G+ + F++M
Sbjct: 294 FNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMV 353
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E ++PD + Y+ + + Y RA D+ + LL M + LQ NV + ++
Sbjct: 354 KAE--IEPDIQAYSILAKGYVRAGQPDKAE---ALLNSMTK--YGLQANVVIFTTII--- 403
Query: 331 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 368
+ +CA A + AL+ YE NE G PL+L
Sbjct: 404 SGWCA---AGKMDCALRLYEK-----MNE--MGTPLNL 431
>gi|302832742|ref|XP_002947935.1| hypothetical protein VOLCADRAFT_103709 [Volvox carteri f.
nagariensis]
gi|300266737|gb|EFJ50923.1| hypothetical protein VOLCADRAFT_103709 [Volvox carteri f.
nagariensis]
Length = 2192
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 9/232 (3%)
Query: 69 RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
RL F L+ ++ +I M AGL+PGPR+ H +Y GD GA + +
Sbjct: 578 RLNFHRSLLAASQRGLTAECARIIEAMSDAGLAPGPRAIHVWAYSYIQIGDGPGAKRTAE 637
Query: 129 RELSA-GVRPLHETLIALARLFGSKGLATKGLEILAAME------KINYDIRQAWLILVE 181
A G+ + ET +AL + G+ G ++L A++ + + + L +
Sbjct: 638 AGREAYGISWIPETYVAL--MHGALSATPGGPDLLGALQLWVAQQDAGANPQLGFTFLTK 695
Query: 182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA 241
EL R +Y A +V G GL+ +++ L+I + CK G A + AG +
Sbjct: 696 ELFRMRYSALAMQVVSEGYAAGLQPDEKLAALVIEQLCKQGLMEEARAEMQRLLDAGLLV 755
Query: 242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
H++ ++ +A G A +N + + P +Y +++ A
Sbjct: 756 GPDHYDTIVRLEAARGNLGSAREMLQNFYTDQRFAPPRASSYTALLKGLVSA 807
>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 16/218 (7%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L+ L YLE+A +VF + ++ G + + +++ C+AG HS+ +++ EM ++
Sbjct: 158 LLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSS 217
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G + +N ++S + CG + A + E + PD T+NC I A ++
Sbjct: 218 GALPNRVAYNTVIS--SLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKS---G 272
Query: 298 RVQDVAELL-GMMVEDHKRL-QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
++ + + + M +++ L +PN TY L++E F EA F +++N E +
Sbjct: 273 QILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLSLR 332
Query: 356 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393
+N +++ L R G+++E L MA+ N
Sbjct: 333 SYN---------IWMLGLVRSGKLLEAHLILNEMAEKN 361
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 129/311 (41%), Gaps = 24/311 (7%)
Query: 87 RVNDVIY---DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
RV+ VI+ DM A + P +F+ L+ A G E A + G +P +L
Sbjct: 133 RVDCVIWLYKDMAVARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLG 192
Query: 144 ALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
L R + GL + G+++L M R A+ ++ L +A K+ + +
Sbjct: 193 ILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREV 252
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA----TTFHFNHLLSCQATCGI 258
GL ++ IA CK+G A I +M+ M T +N +L + G+
Sbjct: 253 GLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGM 312
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E A A F++M+ E +YN + R+ ++ + +L M E K ++P
Sbjct: 313 FEEARAIFDSMKNSETL---SLRSYNIWMLGLVRS---GKLLEAHLILNEMAE--KNIKP 364
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
N+ +Y +LV KY ++A R L G V + + S L CR G+
Sbjct: 365 NLYSYNILVHGLCKYGMFSDA-RSILGLMRESG---VAPDTVTY----STLLHGYCRRGK 416
Query: 379 IIELLEALEAM 389
I+E L M
Sbjct: 417 ILEANYVLREM 427
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ ++ L + +++A K L L I+D I CK G S+A + EME
Sbjct: 532 YATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEME 591
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAE 294
G + +N L+ G F + M E E + P+ TYN +I +
Sbjct: 592 KKGCNKSLRTYNSLIQ---GLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEG- 647
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
+++D LL M++ K + PN+ T+ +L+ F K C
Sbjct: 648 --GKLKDATCLLDEMLQ--KGISPNIYTFRILIGAFFKAC 683
>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 918
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 135/343 (39%), Gaps = 28/343 (8%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
+ H + + R ++ +M G+ +H ++ YT+ G+ E + R G
Sbjct: 386 IYAHCQTCNMDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGF 445
Query: 136 RPLHETLIALARLFGSKGLATKGLEI--LAAMEKINYDIRQAWLILVEELVRNKYLEDAN 193
P + L L+ G +K L+I + M I ++++ + +L+ ++ K +A
Sbjct: 446 SPSVISYGCLINLYTKIGKVSKALQISKMMKMSGIKHNMK-TYSMLINGFLKLKDWANAF 504
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
VF K GL+ +Y+ +I C + A+ + +M+ TT F ++
Sbjct: 505 SVFEDFTKDGLKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGF 564
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
A G A F+ M P TYN +I E + VA L M V
Sbjct: 565 ARAGEMRRALEIFDMMR--RSGCIPTVHTYNALILGLV--EKRKMAKAVAILDQMNVAG- 619
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLR 371
+ PN TY L++ + +A ++F VL NEG D + L+
Sbjct: 620 --VGPNEHTYTTLMQGYASLGDTEKAFQYF----------SVLRNEGLEIDVYTYEALLK 667
Query: 372 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
+ C+ GR+ L + M+ N +P + Y L+ W
Sbjct: 668 SCCKSGRMQSALAVTKEMSAKN--IPRNTFV----YNILIDGW 704
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 9/220 (4%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R + ++ M AG+ P ++ L+ Y GD E A + G+ T
Sbjct: 603 RKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTY 662
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGA 200
AL + G L + M N R ++ IL++ R + +A + +
Sbjct: 663 EALLKSCCKSGRMQSALAVTKEMSAKNIP-RNTFVYNILIDGWARRGDVWEAADLMQQMR 721
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
K G+ Y + CKAGD A EI EMEA G + L++ A +PE
Sbjct: 722 KEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEAFGIKPNLKTYTTLINGWARASMPE 781
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAY----TRAESY 296
A + FE M+ E +KPD Y+C++ + T A+SY
Sbjct: 782 KALSCFEEMKLAE--LKPDKAAYHCLMTSLLSRATFAQSY 819
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 96/255 (37%), Gaps = 43/255 (16%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+AR D M A G+ P + L+ AY + D E A+H +++ G+
Sbjct: 284 YARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEGIE-- 341
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
T++ + + G G A G DA + +
Sbjct: 342 -MTIVTYSIIVG--GFAKMGKA------------------------------DAADHWFK 368
Query: 199 GAKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
AK L + + + Y +I C+ + A + EME G A ++ ++ G
Sbjct: 369 EAKEKLPSLNAVTYGSIIYAHCQTCNMDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIG 428
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
E F+ ++ E P +Y C+I YT+ + +++++ M H
Sbjct: 429 NEEKCLIVFDRLK--ECGFSPSVISYGCLINLYTKIGKVSKALQISKMMKMSGIKH---- 482
Query: 318 PNVKTYALLVECFTK 332
N+KTY++L+ F K
Sbjct: 483 -NMKTYSMLINGFLK 496
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 42/257 (16%)
Query: 92 IYDMIA-AGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
I+DM+ +G P +++ L++ A+ L + AGV P T L + +
Sbjct: 576 IFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYA 635
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
S G K + + ++RN+ GL
Sbjct: 636 SLGDTEKAFQYFS-------------------VLRNE---------------GLEIDVYT 661
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ ++ CK+G +AL + EM A TF +N L+ A G A + M
Sbjct: 662 YEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMR 721
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
++ + PD TY + A +A +Q E++ M + ++PN+KTY L+ +
Sbjct: 722 --KEGVLPDIHTYTSFVNACCKAGD---MQKATEIIQEM--EAFGIKPNLKTYTTLINGW 774
Query: 331 TKYCAVTEAIRHFRALQ 347
+ +A+ F ++
Sbjct: 775 ARASMPEKALSCFEEMK 791
>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
Length = 927
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/352 (20%), Positives = 136/352 (38%), Gaps = 34/352 (9%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ + H + + + ++ +M G+ +H ++ YT+ G+ E + R
Sbjct: 374 IIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDR 433
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME--KINYDIRQAWLILVEELVRNK 187
G P + L L+ G +K LE+ ME I ++++ + +L+ VR K
Sbjct: 434 LKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMK-TYSMLINGFVRLK 492
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+A VF K GL+ +Y+ +I C G+ A+ EM+ TT F
Sbjct: 493 DWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFM 552
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ A G A F+ M + P T+N +I ++ ++ + +
Sbjct: 553 PIIHGFARSGDMRRALEIFDMMRWSG--CIPTVHTFNALILGLVEKCQMEKAVEILDEMS 610
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
+ + PN TY ++ + +A +F L+ G L
Sbjct: 611 L-----AGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTE-------------GLELD 652
Query: 368 LY-----LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
+Y L+A C+ GR+ L M+ +Q +P + Y L+ W
Sbjct: 653 VYTYEALLKACCKSGRMQSALAVTREMS--SQKIPRNTFV----YNILIDGW 698
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 5/202 (2%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+++ +M AG+SP ++ ++ Y GD A + + G+ T AL +
Sbjct: 604 EILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKAC 663
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G L + M +KI + + IL++ R + +A ++ + + G++
Sbjct: 664 CKSGRMQSALAVTREMSSQKIPRNTF-VYNILIDGWARRGDVWEAAELMQQMKQEGVQPD 722
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y I CKAGD A + EME G + L+ A +PE A F+
Sbjct: 723 IHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQ 782
Query: 268 NMEYGEDYMKPDTETYNCVIQA 289
M+ +KPD Y+C++ +
Sbjct: 783 EMKSAG--LKPDKAVYHCLMTS 802
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 104/277 (37%), Gaps = 41/277 (14%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
FM + AR+ D R ++ M +G P +F+ L++ E A+ L
Sbjct: 551 FMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMS 610
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLED 191
AG+ P T + + S G K E
Sbjct: 611 LAGISPNEHTYTTIMHGYASLGDTGKAFE------------------------------- 639
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
F + GL Y+ ++ CK+G +AL + EM + TF +N L+
Sbjct: 640 ---YFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILID 696
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
A G A + M+ ++ ++PD TY I A +A R + + ++
Sbjct: 697 GWARRGDVWEAAELMQQMK--QEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVV-- 752
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
++PN+KTY L+ + + +A++ F+ +++
Sbjct: 753 ---GVKPNIKTYTTLIHGWARASLPEKALKCFQEMKS 786
>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 16/218 (7%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L+ L YLE+A +VF + ++ G + + +++ C+AG HS+ +++ EM ++
Sbjct: 158 LLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSS 217
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G + +N ++S + CG + A + E + PD T+NC I A ++
Sbjct: 218 GALPNRVAYNTVIS--SLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKS---G 272
Query: 298 RVQDVAELL-GMMVEDHKRL-QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
++ + + + M +++ L +PN TY L++E F EA F +++N E +
Sbjct: 273 QILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLSLR 332
Query: 356 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393
+N +++ L R G+++E L MA+ N
Sbjct: 333 SYN---------IWMLGLVRSGKLLEAHLILNEMAEKN 361
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 129/311 (41%), Gaps = 24/311 (7%)
Query: 87 RVNDVIY---DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
RV+ VI+ DM A + P +F+ L+ A G E A + G +P +L
Sbjct: 133 RVDCVIWLYKDMAVAKVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLG 192
Query: 144 ALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
L R + GL + G+++L M R A+ ++ L +A K+ + +
Sbjct: 193 ILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREV 252
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA----TTFHFNHLLSCQATCGI 258
GL ++ IA CK+G A I +M+ M T +N +L + G+
Sbjct: 253 GLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGM 312
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E A A F++M+ E +YN + R+ ++ + +L M E K ++P
Sbjct: 313 FEEARAIFDSMKNSETL---SLRSYNIWMLGLVRS---GKLLEAHLILNEMAE--KNIKP 364
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
N+ +Y +LV KY ++A R L G V + + S L CR G+
Sbjct: 365 NLYSYNILVHGLCKYGMFSDA-RSILGLMRESG---VAPDTVTY----STLLHGYCRRGK 416
Query: 379 IIELLEALEAM 389
I+E L M
Sbjct: 417 ILEANYVLREM 427
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ ++ L + +++A K L L I+D I CK G S+A + EME
Sbjct: 532 YATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEME 591
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAE 294
G + +N L+ G F + M E E + P+ TYN +I +
Sbjct: 592 KKGCNKSLRTYNSLIQ---GLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEG- 647
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
+++D LL M++ K + PN+ T+ +L+ F K C
Sbjct: 648 --GKLKDATCLLDEMLQ--KGISPNIYTFRILIGAFFKAC 683
>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 671
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 117/269 (43%), Gaps = 26/269 (9%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIA 144
V +I +M+ P +F L NG + AM L++ G RP ++ TLI
Sbjct: 333 VGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLI- 391
Query: 145 LARLFGSKGLATKGLEILAAM----EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
F +G L++L +M + I+++ ++ L R + +DA ++ ++
Sbjct: 392 --YSFSEQGRVDDALKLLNSMPCSPDVISFNAA------LKGLCRAERWDDAEELIVQML 443
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ + ++++I C+ G +NA+E+ +M G ++ L++ + G+ E
Sbjct: 444 REDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVE 503
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
A F++M KPD YN V++ RA R +D EL+ M K PN
Sbjct: 504 SAIELFQSMP-----CKPDIFGYNAVLKGLCRAA---RWEDAGELISNMA--RKDCPPNE 553
Query: 321 KTYALLVECFTKYCAVTEAIRHFRALQNY 349
T+ +L+ + V AI F + Y
Sbjct: 554 ITFNILINSLCQKGLVDRAIEVFEQMPKY 582
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 14/219 (6%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
+F+ L+ + NG A+ ++ G P T +L +GL +E+ +M
Sbjct: 453 TFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSM 512
Query: 166 EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
DI + +++ L R EDA ++ A+ + ++++I C+ G
Sbjct: 513 -PCKPDIF-GYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVD 570
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
A+E+ +M G F +N L++ + G + A M KPD +YN
Sbjct: 571 RAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTMS-----CKPDAVSYNS 625
Query: 286 VIQAYTRAESYDRVQD-VAELLGMMVEDHKRLQPNVKTY 323
++ RAE + ++ VAE+L M + PN T+
Sbjct: 626 ALKGLCRAERWKEAEEVVAEMLRM------KCPPNEVTF 658
>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Cucumis sativus]
Length = 962
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 139/355 (39%), Gaps = 40/355 (11%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ + + + + + ++ +M G+ +H ++ YT+ GD + + +R
Sbjct: 417 IIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFER 476
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNK 187
G+ P T L L+ G +K LE+ ME I ++++ + +L+ ++ K
Sbjct: 477 FKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMK-TYSMLINGFLKLK 535
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+A +F K G++ +Y+ +I C G A+ EM+ TT F
Sbjct: 536 DWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFM 595
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT---RAESYDRVQDVAE 304
++ A G + A F+ M P TYN +I + E +++ D
Sbjct: 596 PIIHGFARKGEMKKALDVFDMMRMSG--CIPTVHTYNALILGLVEKRKMEKAEQILDEMT 653
Query: 305 LLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 364
L G + PN TY ++ + +A +F L++ G
Sbjct: 654 LAG--------VSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDE-------------GL 692
Query: 365 PLSLY-----LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
L +Y L+A C+ GR+ L + M+ N +P I Y L+ W
Sbjct: 693 QLDVYTYEALLKACCKSGRMQSALAVTKEMSAQN--IPRNTFI----YNILIDGW 741
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 5/209 (2%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R + ++ +M AG+SP ++ ++ Y GD A + G++ T
Sbjct: 640 RKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTY 699
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGA 200
AL + G L + M N R ++ IL++ R + +A + +
Sbjct: 700 EALLKACCKSGRMQSALAVTKEMSAQNIP-RNTFIYNILIDGWARRGDIWEAADLMQQMK 758
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ G++ Y I KAGD A + EM++ G + L++ A +PE
Sbjct: 759 REGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPE 818
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQA 289
A + FE M+ +KPD Y+C++ +
Sbjct: 819 KALSCFEEMKLSG--LKPDRAVYHCLMTS 845
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 112/301 (37%), Gaps = 43/301 (14%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
+D + D+I G+ P ++ ++ A+ G + A+ ++K +P T
Sbjct: 535 KDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTF 594
Query: 143 IALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKV------ 195
+ + F KG K L++ M + L+ LV + +E A ++
Sbjct: 595 MPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTL 654
Query: 196 -----------------------------FLRGAKGGLRATDEIYDLMIAEDCKAGDHSN 226
F + GL+ Y+ ++ CK+G +
Sbjct: 655 AGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQS 714
Query: 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286
AL + EM A TF +N L+ A G A + M+ + ++PD TY
Sbjct: 715 ALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMK--REGVQPDIHTYTSF 772
Query: 287 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
I A ++A R E + + ++PNVKTY L+ + + +A+ F +
Sbjct: 773 INACSKAGDMQRATKTIEEMKSV-----GVKPNVKTYTTLINGWARASLPEKALSCFEEM 827
Query: 347 Q 347
+
Sbjct: 828 K 828
>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/330 (20%), Positives = 128/330 (38%), Gaps = 24/330 (7%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R ++ +M G+ +H ++ YT+ G+ E + KR G P + L
Sbjct: 396 RAESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLI 455
Query: 147 RLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
++ G +K LE+ ME I ++++ + +L+ ++ K +A VF K GL
Sbjct: 456 NMYTKMGKVSKALEVSKMMESAGIKHNMK-TYSMLINGFLKLKDWTNAFTVFEDVIKDGL 514
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ +Y+ +I C G+ A+ + EM+ T+ F ++ A G A
Sbjct: 515 KPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALE 574
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
F+ M P T+N ++ ++ ++ + + + + P+ TY
Sbjct: 575 IFDMMR--RSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMAL-----AGVSPDEHTYT 627
Query: 325 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLE 384
++ + +A +F L+N V E L+A C+ GR+ L
Sbjct: 628 TIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTYEA--------LLKACCKSGRMQSALA 679
Query: 385 ALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
M+ N +P + Y L+ W
Sbjct: 680 VTREMSAQN--IPRNTFV----YNILIDGW 703
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 104/270 (38%), Gaps = 11/270 (4%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
+D V D+I GL P ++ ++ A+ G+ + A+H +K RP T
Sbjct: 497 KDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTF 556
Query: 143 IALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
+ + F G + LEI M + + LV LV + +E A ++ A
Sbjct: 557 MPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMAL 616
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G+ + Y ++ GD A E ++ G F + LL G +
Sbjct: 617 AGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQS 676
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A A M + +T YN +I + R V + A+L+ M ++ +QP++
Sbjct: 677 ALAVTREMS--AQNIPRNTFVYNILIDGWARRGD---VWEAADLMQQMKQEG--VQPDIH 729
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQNYEG 351
TY + C + +R + +Q E
Sbjct: 730 TYTSFINAC---CKAGDMLRATKTIQEMEA 756
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 9/220 (4%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R + +++ +M AG+SP ++ ++ Y GD A + + G+ T
Sbjct: 602 RQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTY 661
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGA 200
AL + G L + M N R ++ IL++ R + +A + +
Sbjct: 662 EALLKACCKSGRMQSALAVTREMSAQNIP-RNTFVYNILIDGWARRGDVWEAADLMQQMK 720
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ G++ Y I CKAGD A + EMEA G + L+ A +PE
Sbjct: 721 QEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPE 780
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAY----TRAESY 296
A FE M+ +KPD Y+C++ + T AE+Y
Sbjct: 781 KALRCFEEMKLAG--LKPDKAVYHCLMTSLLSRATVAEAY 818
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 113/274 (41%), Gaps = 18/274 (6%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+AR D R M G+ P + L+ AY + D E A+ +++ GV
Sbjct: 312 YARRGDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMS 371
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL---ILVEELVRNKYLEDANK- 194
T + F G A + + A E + ++ + + I + + N Y N+
Sbjct: 372 LVTYSIVVGGFAKIGNADQSCNMDRA-ESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEE 430
Query: 195 ----VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
VF R + G + Y +I K G S ALE++ ME+AG ++ L+
Sbjct: 431 KCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLI 490
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR-VQDVAELLGMM 309
+ AF FE++ +D +KPD YN +I+A+ + DR + V E+
Sbjct: 491 NGFLKLKDWTNAFTVFEDVI--KDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEM---- 544
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
KR +P +T+ ++ F + + A+ F
Sbjct: 545 --QKKRHRPTSRTFMPIIHGFARAGEMRRALEIF 576
>gi|302819880|ref|XP_002991609.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
gi|300140642|gb|EFJ07363.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
Length = 356
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 109/261 (41%), Gaps = 43/261 (16%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+V +VI +MI L P SF+ L+ AY ++ E + +AGV P T L
Sbjct: 116 KVEEVIREMIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLI 175
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
++F + + +E+ EE+V NK D F
Sbjct: 176 QMFSRSSMHKEAIEMF------------------EEMVVNKCQPD----FF--------- 204
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
+Y L+++ KAG ++AL I + ++ G + L+S G+ E + F
Sbjct: 205 ---VYSLLVSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHF 261
Query: 267 ENME-YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
ME YG + D N +I AY +A V D A LL + + + PN +YA+
Sbjct: 262 SQMEAYG---CRADVHLLNTMIDAYAKA---GMVNDAANLLHRLTA--QGVCPNRASYAI 313
Query: 326 LVECFTKYCAVTEAIRHFRAL 346
+VE F V EA+ + ++
Sbjct: 314 IVEGFLHAGHVEEALAAYASM 334
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 15/182 (8%)
Query: 166 EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
+++ YDI LV +N Y D ++FL G+ T Y+++I K G
Sbjct: 64 DEVTYDI------LVSGSGKNGYPID--RLFLEIKSRGVALTLRSYNVVICAFTKEGSID 115
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
E+ EM F FN L++ A PE F NM+ + PD TY
Sbjct: 116 KVEEVIREMIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAG--VLPDIVTYTT 173
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA 345
+IQ ++R+ + ++ E+ MV + + QP+ Y+LLV + K V +A+ F
Sbjct: 174 LIQMFSRSSMH---KEAIEMFEEMVVN--KCQPDFFVYSLLVSVYGKAGLVADALLIFHR 228
Query: 346 LQ 347
LQ
Sbjct: 229 LQ 230
>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 8/234 (3%)
Query: 64 AEQGL---RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDH 120
E+GL +IF + H+RN + + M++ GL P ++ LV + NGD
Sbjct: 337 CERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDL 396
Query: 121 EGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLIL 179
A + + + G+RP T L F G LEI M++ ++ R + L
Sbjct: 397 VAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSAL 456
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR 239
+ + + + DA + + G++ D Y +M+ CK GD ++ EM++ G
Sbjct: 457 ICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGH 516
Query: 240 MATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTR 292
+ +N LL+ G + A + M G + PD TYN +++ + R
Sbjct: 517 IPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVG---VVPDDITYNTLLEGHHR 567
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 96/246 (39%), Gaps = 49/246 (19%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALAR 147
+ Y+M GL P F L+ ++ NG + S ++ LS G++P L+ TL+
Sbjct: 332 LFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLV---- 387
Query: 148 LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G G +++AA ++ IR+ GLR
Sbjct: 388 ----NGFCKNG-DLVAARNIVDGMIRR----------------------------GLRPD 414
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATF 266
Y +I C+ GD ALEI EM+ G F+ L+ G + + A
Sbjct: 415 KVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALR 474
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
E + G MKPD TY ++ A+ + Q +LL M D PNV TY +L
Sbjct: 475 EMLRAG---MKPDDVTYTMMMDAFCKKGD---AQTGFKLLKEMQSDGH--IPNVVTYNVL 526
Query: 327 VECFTK 332
+ K
Sbjct: 527 LNGLCK 532
>gi|357113447|ref|XP_003558514.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29290-like isoform 1 [Brachypodium distachyon]
gi|357113449|ref|XP_003558515.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29290-like isoform 2 [Brachypodium distachyon]
gi|357113451|ref|XP_003558516.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29290-like isoform 3 [Brachypodium distachyon]
Length = 574
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 104/219 (47%), Gaps = 16/219 (7%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+ GL+P ++ + T G E A+ + +R LSAG++P ++ G G
Sbjct: 309 EMLLNGLNPSEDIMKAIIASCTKEGRWEFALATFRRMLSAGMKPNIIVFNSIINSLGKAG 368
Query: 154 ---LATKGLEIL--AAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA-- 206
LA + +L + +E Y W L+ L R+ DA ++F +G K +
Sbjct: 369 EDELAFRMYHLLTSSGLEPDQY----TWSALLSALYRSGRCWDALELF-QGIKSKHSSVL 423
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL-SCQATCGIPEVAFAT 265
+Y++ + + G +AL++ + ME + +NH++ +C+ C P+VA
Sbjct: 424 NSHLYNIALMSCERLGQWEHALQLLWMMEKNELQISVVSYNHVIRACEVACE-PKVALKV 482
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
++ M + + PDT T+ VI+A +++V+D+ E
Sbjct: 483 YQRMTH--ERCSPDTFTHLSVIRACIWGSLWNKVEDILE 519
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 58/298 (19%), Positives = 119/298 (39%), Gaps = 23/298 (7%)
Query: 65 EQGLRLIFMEE---------LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYT 115
+G RL F+EE L+ +++ ++ M A+GL P + + L+ ++
Sbjct: 129 HEGSRLHFLEERDEEILSRRLINLSKSNKVRSATELFDSMRASGLQPNAHACNSLLASFV 188
Query: 116 LNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME-----KINY 170
G AM + G+ H + L + ++G + L+I + +E +
Sbjct: 189 RRGYSTDAMKMFEFMKGKGLATGHTYTLILKAVASTEGYVS-ALQIFSEIEEGKESRGTL 247
Query: 171 DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEI 230
D+ + ++ R K K++ R + + T YDL+++ + G A+
Sbjct: 248 DV-IVYNTMISACGRAKDWRQVEKLWRRLVENSISGTLMTYDLLVSTFVQCGQSELAIAA 306
Query: 231 AYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 290
EM G + +++ G E A ATF M MKP+ +N +I +
Sbjct: 307 YQEMLLNGLNPSEDIMKAIIASCTKEGRWEFALATFRRMLSAG--MKPNIIVFNSIINSL 364
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
+A + + LL L+P+ T++ L+ + +A+ F+ +++
Sbjct: 365 GKAGEDELAFRMYHLL-----TSSGLEPDQYTWSALLSALYRSGRCWDALELFQGIKS 417
>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 12/256 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P + + LV LNG A+ + R + G +P T + ++ G
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227
Query: 155 ATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+E+L ME KI D + + I+++ L ++ L++A +F G +A IY
Sbjct: 228 TALAMELLRKMEERKIKLDAVK-YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYT 286
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFENMEY 271
+I C AG + ++ +M F+ L+ C G + E E ++
Sbjct: 287 TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQR 346
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
G + PDT TY +I + + D+ +L +MV K PN++T+ +L+ +
Sbjct: 347 G---ISPDTVTYTSLIDGFCKENQLDKAN---HMLDLMVS--KGCGPNIRTFNILINGYC 398
Query: 332 KYCAVTEAIRHFRALQ 347
K + + + FR +
Sbjct: 399 KANLIDDGLELFRKMS 414
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 109/259 (42%), Gaps = 10/259 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ DMI ++P +F L+ + G A K + G+ P T +L F
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC 363
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+ K +L M + +IR + IL+ + ++D ++F + + G+ A
Sbjct: 364 KENQLDKANHMLDLMVSKGCGPNIR-TFNILINGYCKANLIDDGLELFRKMSLRGVVADT 422
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y+ +I C+ G A E+ EM + + LL G PE A FE
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEK 482
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+E + M+ D YN +I A D D+ L + K ++P+VKTY +++
Sbjct: 483 IE--KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL-----KGVKPDVKTYNIMIG 535
Query: 329 CFTKYCAVTEAIRHFRALQ 347
K +++EA FR ++
Sbjct: 536 GLCKKGSLSEADLLFRKME 554
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 14/219 (6%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ LV++ + KV+ G + ++I +CKAG ALE ++
Sbjct: 33 LLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFS 92
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ FN L+ G P+ A FENME +KP+ TYN VI ++ + ++
Sbjct: 93 VAPDVYIFNVLIHGLFKDGNPDQAVKLFENME--SSRVKPEIVTYNTVISGLCKSGNLEK 150
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
+ ELL M+ + P++ TY L+ F + + EA ++ VL
Sbjct: 151 AR---ELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVL-- 205
Query: 359 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
++ + +C++G + E LE L+ M K PVP
Sbjct: 206 ------TCNILVSGICKDGDVEEALEILDGM-KLAGPVP 237
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 122/334 (36%), Gaps = 77/334 (23%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
++ D +++ M AG P +++ ++ A + G A LK + P
Sbjct: 215 CKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILK---TMSCSPDL 271
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK-------INYDIR----------QAWLILVEE 182
T L F G+ + LE+L M + I Y I Q L+EE
Sbjct: 272 VTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEE 331
Query: 183 LVRNKYL-------------------EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD 223
+VR Y+ E+A+K+ + G R +Y +++ C+AG+
Sbjct: 332 IVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGN 391
Query: 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY 283
A EI EM + + F +N +L G A + ++ Y+ PD TY
Sbjct: 392 VHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDL-VARGYV-PDVVTY 449
Query: 284 NCVIQAYTRA----ESYD-------------------------RVQDVAELLGMMVE-DH 313
N +I +A E+ D RV V + ++VE
Sbjct: 450 NTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSR 509
Query: 314 KRLQPNVKTYALLVECFTKY------CAVTEAIR 341
KR PNV Y L++ K C V +A+R
Sbjct: 510 KRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMR 543
Score = 39.7 bits (91), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+++++ CK GD ALEI M+ AG + +N ++ G A + M
Sbjct: 208 NILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS- 266
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
PD T+N ++ + +A R +V E + + + P+V TY +LV
Sbjct: 267 ----CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMC-----RENILPDVITYTILVN 314
>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 106/238 (44%), Gaps = 8/238 (3%)
Query: 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILA 163
P +F L+ AY +G E A+ S + G +P T ++ + K + L +
Sbjct: 131 PPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYN 190
Query: 164 AMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAG 222
M K+NY+ R ++IL+ L +N +DA K+F + G+ IY ++++ C+A
Sbjct: 191 QMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAK 250
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
+ + M+ +G + N LL G + AFA + E E Y+ +
Sbjct: 251 RTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFE-KEGYVL-GIKG 308
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
Y+ +I RA+ YD VQ+ + ++P+V Y +L+ F + V A+
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKMF-----KAGIEPDVVLYTILIRGFCEVGMVDYAL 361
>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
Length = 735
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 12/256 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P + + LV LNG A+ + R + G +P T + ++ G
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227
Query: 155 ATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+E+L ME KI D + + I+++ L ++ L++A +F G +A IY
Sbjct: 228 TALAMELLRKMEERKIKLDAVK-YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYT 286
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFENMEY 271
+I C AG + ++ +M F+ L+ C G + E E ++
Sbjct: 287 TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQR 346
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
G + PDT TY +I + + D+ +L +MV K PN++T+ +L+ +
Sbjct: 347 G---ISPDTVTYTSLIDGFCKENQLDKAN---HMLDLMVS--KGCGPNIRTFNILINGYC 398
Query: 332 KYCAVTEAIRHFRALQ 347
K + + + FR +
Sbjct: 399 KANLIDDGLELFRKMS 414
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 109/259 (42%), Gaps = 10/259 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ DMI ++P +F L+ + G A K + G+ P T +L F
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC 363
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+ K +L M + +IR + IL+ + ++D ++F + + G+ A
Sbjct: 364 KENQLDKANHMLDLMVSKGCGPNIR-TFNILINGYCKANLIDDGLELFRKMSLRGVVADT 422
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y+ +I C+ G A E+ EM + + LL G PE A FE
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEK 482
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+E + M+ D YN +I A D D+ L + K ++P+VKTY +++
Sbjct: 483 IE--KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL-----KGVKPDVKTYNIMIG 535
Query: 329 CFTKYCAVTEAIRHFRALQ 347
K +++EA FR ++
Sbjct: 536 GLCKKGSLSEADLLFRKME 554
>gi|428186270|gb|EKX55120.1| hypothetical protein GUITHDRAFT_53115, partial [Guillardia theta
CCMP2712]
Length = 363
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 137/348 (39%), Gaps = 51/348 (14%)
Query: 22 GVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLS-TNGSVVSAAEQGLR---LIFMEELM 77
G+ P R + ++ R + R DS+ S T + V+A + LR + F +
Sbjct: 14 GLTPTRVSYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAA--RSLRPDTVTFSTAIS 71
Query: 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVA------------------------ 113
A+ + R ++ ++M A G+ P +F L+ A
Sbjct: 72 ACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFERMQARGIVG 131
Query: 114 --YTLN---------GDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEIL 162
YT GD + A+ L+ ++ G++P + A A L +L
Sbjct: 132 NVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAAEARPALGLL 191
Query: 163 AAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220
M EKI DI + ++ + E A ++F + + GL Y +I +
Sbjct: 192 ERMTNEKIKPDI-IVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDVVAYSTLIQAYQR 250
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
AG+ S ALE+ ME AG + ++ A G + E M+ D ++PD
Sbjct: 251 AGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLERMK--ADKLRPDA 308
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
YN VI A +R +D LL M+ ED QPN+ TY +++
Sbjct: 309 VAYNFVISALSRGGQWDAGLT---LLQMLEEDEA--QPNISTYCTVIK 351
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 134/333 (40%), Gaps = 26/333 (7%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R V+ +M+ G+SP +++ L+V N + A S GV P + AL
Sbjct: 446 RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI 505
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
L G + L+ M+ + IL+ RN + +A KV + G
Sbjct: 506 GLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCX 565
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y+ ++ CK S A E+ EM G + F L++ G A
Sbjct: 566 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTL 625
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
FE M + +KPD TYN +I + + ++V EL M+ +R+ PN +Y +
Sbjct: 626 FEMMI--QRNLKPDVVTYNTLIDGFCKGSEMEKVN---ELWNDMIS--RRIYPNHISYGI 678
Query: 326 LVECFTKYCAVTEAIRHFRAL--QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELL 383
L+ + V+EA R + + + +E T + N ++ CR G ++
Sbjct: 679 LINGYCNMGCVSEAFRLWDEMVEKGFE-ATIITCNT---------IVKGYCRAGNAVKAD 728
Query: 384 EALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
E L M + + P + Y TL++ +I+
Sbjct: 729 EFLSNMLL--KGIVPDGI----TYNTLINGFIK 755
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 98/252 (38%), Gaps = 27/252 (10%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R+R P VI M+ LV+ Y G + L R R L
Sbjct: 247 VRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTY-VQARKLR 305
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
E A R+ SKGL IN A L+ LV+ +++ A +++
Sbjct: 306 EGCEAF-RVLKSKGLCVS----------IN-----ACNSLLGGLVKVGWVDLAWEIYQEV 349
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
+ G++ ++MI CK N +ME G +N L++ G+
Sbjct: 350 VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 409
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA-ELLGMMVEDHKRLQP 318
E AF ++M G+ +KP TYN +I + Y R + V E+L + + P
Sbjct: 410 EEAFELMDSMS-GKG-LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI------GMSP 461
Query: 319 NVKTY-ALLVEC 329
+ TY LLVEC
Sbjct: 462 DTATYNILLVEC 473
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 109/271 (40%), Gaps = 29/271 (10%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARL 148
+++ +M G+ P +F L+ Y +G+ A+ + + ++P T L
Sbjct: 588 DELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDG 647
Query: 149 FGSKGLATKGLEILAAMEKIN-----------YDIRQAWLILVEELVRNKYLEDANKVFL 197
F KG E MEK+N Y ++ IL+ + +A +++
Sbjct: 648 F------CKGSE----MEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWD 697
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ G AT + ++ C+AG+ A E M G + +N L++
Sbjct: 698 EMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEE 757
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+ AFA ME + PD TYN ++ ++R R+Q+ ++ M+E + +
Sbjct: 758 NMDRAFALVNKME--NSGLLPDVITYNVILNGFSRQ---GRMQEAELIMLKMIE--RGVN 810
Query: 318 PNVKTYALLVECFTKYCAVTEAIR-HFRALQ 347
P+ TY L+ + EA R H LQ
Sbjct: 811 PDRSTYTSLINGHVTQNNLKEAFRVHDEMLQ 841
>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 680
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 8/224 (3%)
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
++V ++ GD AM L S G+ P TL+A+ G+ G + + + +
Sbjct: 247 IIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENG 306
Query: 170 YDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228
+ R +A+ L++ VR L+DA V K G++ ++ Y L+I AG +A
Sbjct: 307 LEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESAR 366
Query: 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288
+ EMEA+ ++ F+ +L+ G + +F ++M+ ++PD YN +I
Sbjct: 367 IVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMK--SSGVQPDRHFYNVMID 424
Query: 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ + D +A M+ E + P++ T+ L++C K
Sbjct: 425 TFGKYNCLDHA--MATFERMLSEG---IPPDIVTWNTLIDCHCK 463
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 34/248 (13%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ DM ++G+ P ++ ++ + + AM + +R LS G+ P T L
Sbjct: 403 VLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHC 462
Query: 151 SKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G E+ + M++ Y + I++ + + E + GL+
Sbjct: 463 KSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSI 522
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y ++ K+G S+A+E +++ G T+ +N L++ A G+ E+A F M
Sbjct: 523 TYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLM 582
Query: 270 E-----------------YGED-----------YMK-----PDTETYNCVIQAYTRAESY 296
+GED YMK PD TY +++A R E +
Sbjct: 583 TTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKF 642
Query: 297 DRVQDVAE 304
+V V E
Sbjct: 643 QKVPAVYE 650
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 120/304 (39%), Gaps = 16/304 (5%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M AG+ P +++ L+ Y G E A LK ++ V+P + +
Sbjct: 333 VVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYR 392
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
KG K ++L M+ R + ++++ + L+ A F R G+
Sbjct: 393 DKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIV 452
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ +I CK+G H A E+ EM+ G +N +++ E A M
Sbjct: 453 TWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKM 512
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ ++P++ TY ++ Y ++ R D E L ++ +P Y L+
Sbjct: 513 Q--SQGLQPNSITYTTLVDVYGKS---GRFSDAIECLEVL--KSTGFKPTSTMYNALINA 565
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+ + A+ FR L EG T L L+ + A + R E L+ M
Sbjct: 566 YAQRGLSELAVNAFR-LMTTEGLTPSLL-------ALNSLINAFGEDRRDAEAFAVLQYM 617
Query: 390 AKDN 393
++N
Sbjct: 618 KENN 621
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 8/251 (3%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL P R+++ L+ Y G + A + AGV+P +T L ++ G
Sbjct: 306 GLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESA 365
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNK-YLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+L ME N + R+K + + +V G++ Y++MI
Sbjct: 366 RIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDT 425
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
K +A+ M + G +N L+ C G ++A F M+ +
Sbjct: 426 FGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQ--QRGYS 483
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
P TYN +I + + R + V L M + LQPN TY LV+ + K +
Sbjct: 484 PCITTYNIMINSMGEQQ---RWEQVTAFLSKM--QSQGLQPNSITYTTLVDVYGKSGRFS 538
Query: 338 EAIRHFRALQN 348
+AI L++
Sbjct: 539 DAIECLEVLKS 549
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 20/241 (8%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M + P ++ L+ +G E AM+ LK G+ P + L F +G
Sbjct: 320 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 379
Query: 155 ATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+E L M + +NY+ ++ L +N + A ++F + + G
Sbjct: 380 LDVAIEFLETMISDGCLPDIVNYNT------VLATLCKNGKADQALEIFGKLGEVGCSPN 433
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ M + +GD AL + EM + G +N ++SC G+ + AF
Sbjct: 434 SSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLV 493
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
+M E P TYN V+ + +A R++D ++L MV + R PN TY +L+
Sbjct: 494 DMRSCE--FHPSVVTYNIVLLGFCKAH---RIEDAIDVLDSMVGNGCR--PNETTYTVLI 546
Query: 328 E 328
E
Sbjct: 547 E 547
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 138/335 (41%), Gaps = 47/335 (14%)
Query: 117 NGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAW 176
+G++ ++H L+ + G P L + F + K + ++ +EK A+
Sbjct: 98 SGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVFAY 157
Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
L+ + ++DA +V R Y++MI C G AL++ ++ +
Sbjct: 158 NALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLS 217
Query: 237 AGRMATTFHFNHLLSCQATC---GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
T + L+ +AT G+ E E + G +KPD TYN +I+ +
Sbjct: 218 DNCQPTVITYTILI--EATMLEGGVDEALKLLDEMLSRG---LKPDMFTYNTIIRGMCKE 272
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN---YE 350
DR ++ L + K +P+V +Y +L+ RAL N +E
Sbjct: 273 GMVDRAFEMIRNLEL-----KGCEPDVISYNILL----------------RALLNQGKWE 311
Query: 351 GGTKVLHNE-GNFGDP----LSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSR 405
G K++ DP S+ + LCR+G+I E + L+ M + + + P A
Sbjct: 312 EGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE--KGLTPDAY---- 365
Query: 406 KYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGL 440
Y L++++ E L I+++ IS+G L
Sbjct: 366 SYDPLIAAFC----REGRLDVAIEFLETMISDGCL 396
Score = 43.1 bits (100), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 1/156 (0%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+N A + ++ + G SP S++ + A +GD A+H + +S G+ P
Sbjct: 410 CKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDE 469
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLR 198
T ++ +G+ K E+L M + + I++ + +EDA V
Sbjct: 470 ITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDS 529
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
G R + Y ++I AG + A+E+A ++
Sbjct: 530 MVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 565
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 135/333 (40%), Gaps = 26/333 (7%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R V+ +M+ G+SP +++ L+V N + A S GV P + AL
Sbjct: 342 RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI 401
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
L G + L+ M+ + IL+ RN + +A KV + G
Sbjct: 402 GLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCV 461
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y+ ++ CK S A E+ EM G + F L++ + G A
Sbjct: 462 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 521
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
FE M + +KPD TYN +I + + ++V EL M+ +R+ PN +Y +
Sbjct: 522 FEMMI--QRNLKPDVVTYNTLIDGFCKGSEMEKVN---ELWNDMIS--RRIYPNHISYGI 574
Query: 326 LVECFTKYCAVTEAIRHFRAL--QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELL 383
L+ + V+EA R + + + +E T + N ++ CR G ++
Sbjct: 575 LINGYCNMGCVSEAFRLWDEMVEKGFE-ATIITCNT---------IVKGYCRAGNAVKAD 624
Query: 384 EALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
E L M + + P + Y TL++ +I+
Sbjct: 625 EFLSNMLL--KGIVPDGI----TYNTLINGFIK 651
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 98/252 (38%), Gaps = 27/252 (10%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R+R P VI M+ LV+ Y G + L R R L
Sbjct: 143 VRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTY-VQARKLR 201
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
E A R+ SKGL IN A L+ LV+ +++ A +++
Sbjct: 202 EGCEAF-RVLKSKGLCVS----------IN-----ACNSLLGGLVKVGWVDLAWEIYQEV 245
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
+ G++ ++MI CK N +ME G +N L++ G+
Sbjct: 246 VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 305
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA-ELLGMMVEDHKRLQP 318
E AF ++M G+ +KP TYN +I + Y R + V E+L + + P
Sbjct: 306 EEAFELMDSMS-GKG-LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI------GMSP 357
Query: 319 NVKTY-ALLVEC 329
+ TY LLVEC
Sbjct: 358 DTATYNILLVEC 369
Score = 42.7 bits (99), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 110/271 (40%), Gaps = 29/271 (10%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARL 148
+++ +M G+ P +F L+ Y+ +G+ A+ + + ++P T L
Sbjct: 484 DELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDG 543
Query: 149 FGSKGLATKGLEILAAMEKIN-----------YDIRQAWLILVEELVRNKYLEDANKVFL 197
F KG E MEK+N Y ++ IL+ + +A +++
Sbjct: 544 F------CKGSE----MEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWD 593
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ G AT + ++ C+AG+ A E M G + +N L++
Sbjct: 594 EMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEE 653
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+ AFA ME + PD TYN ++ ++R R+Q+ ++ M+E + +
Sbjct: 654 NMDRAFALVNKME--NSGLLPDVITYNVILNGFSRQ---GRMQEAELIMLKMIE--RGVN 706
Query: 318 PNVKTYALLVECFTKYCAVTEAIR-HFRALQ 347
P+ TY L+ + EA R H LQ
Sbjct: 707 PDRSTYTSLINGHVTQNNLKEAFRVHDEMLQ 737
>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 106/238 (44%), Gaps = 8/238 (3%)
Query: 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILA 163
P +F L+ AY +G E A+ S + G +P T ++ + K + L +
Sbjct: 131 PPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYN 190
Query: 164 AMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAG 222
M K+NY+ R ++IL+ L +N +DA K+F + G+ IY ++++ C+A
Sbjct: 191 QMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAK 250
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
+ + M+ +G + N LL G + AFA + E E Y+ +
Sbjct: 251 RTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFE-KEGYVL-GIKG 308
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
Y+ +I RA+ YD VQ+ + ++P+V Y +L+ F + V A+
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKMF-----KAGIEPDVVLYTILIRGFCEVGMVDYAL 361
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 102/252 (40%), Gaps = 21/252 (8%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M AG+ P + L+ + G + A++ L G+ P AL + F GL
Sbjct: 332 MFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGL 391
Query: 155 ATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
K + + K + + + IL+ + RN L++A ++F + G + ++
Sbjct: 392 LDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNA 451
Query: 214 MIAEDCKAGDHSNALEIAYEME-------------AAGRMATTFHFNHLLSCQATCGIPE 260
+I CKAG+ A + Y+ME A R+ T ++ G+
Sbjct: 452 LIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLIL 511
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
A+ M+ + + PD TYN +I + +A++ + + L + K P+
Sbjct: 512 KAYKLL--MQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQL-----KGHSPDS 564
Query: 321 KTYALLVECFTK 332
TY L++ F +
Sbjct: 565 VTYGTLIDGFHR 576
Score = 46.2 bits (108), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 33/240 (13%)
Query: 128 KRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVR 185
++ AG+ P L R F G+ L +L M + ++ D + L++
Sbjct: 330 RKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDT-YCYNALIKGFCD 388
Query: 186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH 245
L+ A + L +K T Y ++I C+ G A +I +ME G +
Sbjct: 389 VGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMT 448
Query: 246 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR-AESYDRVQDVAE 304
FN L+ G E A F ME G++ P + R ++ DRV D A
Sbjct: 449 FNALIDGLCKAGELEEARHLFYKMEIGKN---PSL---------FLRLSQGADRVMDTAS 496
Query: 305 LL---------GMMVEDHKRLQ--------PNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
L G++++ +K L P++ TY +L+ F K + A + FR LQ
Sbjct: 497 LQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQ 556
>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
Length = 724
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 8/239 (3%)
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
++V + +GD AM L G+ P TL+A+ G+ G + I +++
Sbjct: 333 IIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGG 392
Query: 170 YDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228
R +A+ L++ V+ L+DA + + G + Y L+I AG +A
Sbjct: 393 LMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESAR 452
Query: 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288
+ EMEA+G ++ F+ +L+ G + +F M + PD YN +I
Sbjct: 453 IVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR--NSGVSPDRHFYNVMID 510
Query: 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ + D + + M + +QP+ T+ L++C K +A F A+Q
Sbjct: 511 TFGKCNCLDHALATFDRMRM-----EGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQ 564
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 105/277 (37%), Gaps = 64/277 (23%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ +M +G SP ++ L+ AY G E A LK ++GVRP + +
Sbjct: 419 IVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYR 478
Query: 151 SKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G K ++L M ++ D R + ++++ + L+ A F R G++
Sbjct: 479 DRGKWQKSFQVLREMRNSGVSPD-RHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDA 537
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS----------------- 251
++ +I CK+G H+ A E+ M+ +G T +N +++
Sbjct: 538 VTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGK 597
Query: 252 -----------CQATCGIPEVAFATFENME-----------------YGED--------- 274
T G+ E A F M +GED
Sbjct: 598 MQSQGLLANVVTYTTLGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSV 657
Query: 275 --YMK-----PDTETYNCVIQAYTRAESYDRVQDVAE 304
YMK PD TY +++A R E +D+V V E
Sbjct: 658 LQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYE 694
>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial [Vitis vinifera]
gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 8/242 (3%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
+ ++V + +GD AM L G+ P TL+A+ G+ G + I ++
Sbjct: 259 LNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELK 318
Query: 167 KINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
+ R +A+ L++ V+ L+DA + + G + Y L+I AG
Sbjct: 319 EGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWE 378
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
+A + EMEA+G ++ F+ +L+ G + +F M + PD YN
Sbjct: 379 SARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR--NSGVSPDRHFYNV 436
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA 345
+I + + D + + M + +QP+ T+ L++C K +A F A
Sbjct: 437 MIDTFGKCNCLDHALATFDRMRM-----EGVQPDAVTWNTLIDCHCKSGHHNKAEELFEA 491
Query: 346 LQ 347
+Q
Sbjct: 492 MQ 493
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 105/260 (40%), Gaps = 45/260 (17%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ +M +G SP ++ L+ AY G E A LK ++GVRP + +
Sbjct: 348 IVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYR 407
Query: 151 SKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G K ++L M ++ D R + ++++ + L+ A F R G++
Sbjct: 408 DRGKWQKSFQVLREMRNSGVSPD-RHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDA 466
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
++ +I CK+G H+ A E+ M+ +G C
Sbjct: 467 VTWNTLIDCHCKSGHHNKAEELFEAMQESG-------------CS--------------- 498
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
P T TYN +I ++ E R +DV LLG M + L NV TY LV+
Sbjct: 499 ---------PCTTTYNIMINSFGEQE---RWEDVKTLLGKM--QSQGLLANVVTYTTLVD 544
Query: 329 CFTKYCAVTEAIRHFRALQN 348
+ + +AI +++
Sbjct: 545 IYGQSGRFKDAIECLEVMKS 564
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 96/248 (38%), Gaps = 34/248 (13%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M +G+SP ++ ++ + + A+ + R GV+P T L
Sbjct: 418 VLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHC 477
Query: 151 SKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G K E+ AM++ + I++ + ED + + GL A
Sbjct: 478 KSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVV 537
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y ++ ++G +A+E M++ G ++ +N L++ A G+ E A F M
Sbjct: 538 TYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVM 597
Query: 270 E-----------------YGED-----------YMK-----PDTETYNCVIQAYTRAESY 296
+GED YMK PD TY +++A R E +
Sbjct: 598 RADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKF 657
Query: 297 DRVQDVAE 304
D+V V E
Sbjct: 658 DKVPAVYE 665
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 107/252 (42%), Gaps = 13/252 (5%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
+F L+ Y G A+H+ R +P L + + A++ E ++
Sbjct: 131 TFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSL 190
Query: 166 -EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
+K D+ + LV R + +A +VF G++ Y ++I C+ G
Sbjct: 191 KDKFEPDV-IVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQI 249
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME-YGEDYMKPDTETY 283
+ A +I EM AG + +N L+ G E + M+ G +PDT TY
Sbjct: 250 TRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLG---CEPDTVTY 306
Query: 284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
N +I+ + + E+ ++D +++G+M + K PN T+ L C K V A R +
Sbjct: 307 NFLIETHCKDEN---LEDAIKVIGLMAK--KGCAPNASTFNTLFGCIAKLGDVNAAHRMY 361
Query: 344 RALQ--NYEGGT 353
+ ++ N E T
Sbjct: 362 KKMKELNCEANT 373
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 98/259 (37%), Gaps = 47/259 (18%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M AG+ P ++ ++ + G A L AG +P T +L R+
Sbjct: 220 VFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHV 279
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
G K L++ M+++ G
Sbjct: 280 KAGRTEKVLQVYNQMKRL----------------------------------GCEPDTVT 305
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ +I CK + +A+++ M G FN L C A G A ++ M+
Sbjct: 306 YNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMK 365
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E + +T TYN +++ + ++S D V + + D +++PNV TY +L+
Sbjct: 366 --ELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEM-----DENKIEPNVNTYKVLI--- 415
Query: 331 TKYCAV---TEAIRHFRAL 346
T YC + A + FR +
Sbjct: 416 TMYCGMGHWNNAYKFFREM 434
>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
Length = 600
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 15/216 (6%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A L+ L R + A +VF A+ GL + +Y+ M+ KAGD + A +
Sbjct: 150 HACTALLTALARARMTATARRVFDEMARAGLAVSTHVYNAMLHVCLKAGDAARAEALVTR 209
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+AAG F +N +++ G+ A + M+ ++ ++ DT T+N +I +
Sbjct: 210 MDAAGVPLDRFSYNTVIALYCKKGMRYEAMCVRDRMD--KEGIRADTVTWNSLIHGLCK- 266
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
Y RV++ A+L M + P+ TY L++ + + + EA++ L+ T
Sbjct: 267 --YGRVKEAAQLFTEMAA--AQATPDNVTYTTLIDGYCRAGNIEEAVK----LRGEMEAT 318
Query: 354 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+L + + LR LC +G++ E+ + L M
Sbjct: 319 GMLPGVATY----NAILRKLCEDGKMKEVNQLLNEM 350
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 112/269 (41%), Gaps = 16/269 (5%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV---R 136
AR R V +M AGL+ ++ ++ GD A + R +AGV R
Sbjct: 160 ARARMTATARRVFDEMARAGLAVSTHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDR 219
Query: 137 PLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANK 194
+ T+IAL + KG+ + + + M+K I D W L+ L + +++A +
Sbjct: 220 FSYNTVIAL---YCKKGMRYEAMCVRDRMDKEGIRADT-VTWNSLIHGLCKYGRVKEAAQ 275
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+F A + Y +I C+AG+ A+++ EMEA G + +N +L
Sbjct: 276 LFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLC 335
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G + M+ E ++ D T N +I AY + + ++ M+E
Sbjct: 336 EDGKMKEVNQLLNEMD--ERKVQADHVTCNTLINAYCK---RGHMTSACKVKKKMMESG- 389
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHF 343
LQ N TY L+ F K + EA F
Sbjct: 390 -LQLNQFTYKALIHGFCKAKELDEAKEAF 417
>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 817
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 23/170 (13%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
IL+ L + +E A ++ + + GL A + IY+ + C+ GD + A+ ME+
Sbjct: 356 ILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESF 415
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK--------PDTETYNCVIQA 289
G + FN L+ F + M+ E+++K P ETYN +I
Sbjct: 416 GLRPNSITFNSLID----------KFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDG 465
Query: 290 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
Y + ++DR + E + + ++PNV +Y L+ C K + EA
Sbjct: 466 YGKLCTFDRCFQILEQM-----EEIGVKPNVVSYGSLINCLCKDGKILEA 510
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 135/314 (42%), Gaps = 23/314 (7%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
+ + L + R RDA ++ D +M L +++ L+ Y G+ + A +R
Sbjct: 216 VLIGGLCREKRIRDAEKMFD---EMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERM 272
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKY 188
V P T +L + +L ME +N + + IL + L+R
Sbjct: 273 KEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEME-VNGFMPDGYTYSILFDGLLRCDD 331
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
A +++ + + G+R + +++ CK G A EI + G +A +N
Sbjct: 332 GNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNT 391
Query: 249 LLSCQATCGIPEVAFATFENME-YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ G A T E ME +G ++P++ T+N +I + + D+ + E +
Sbjct: 392 FVNGYCRIGDMNKAILTIERMESFG---LRPNSITFNSLIDKFCDMKEMDKAE---EWVK 445
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
M E K + P+V+TY L++ + K C R F+ L+ E V N ++G
Sbjct: 446 KMAE--KGVTPSVETYNTLIDGYGKLCTFD---RCFQILEQME-EIGVKPNVVSYGS--- 496
Query: 368 LYLRALCREGRIIE 381
+ LC++G+I+E
Sbjct: 497 -LINCLCKDGKILE 509
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 15/275 (5%)
Query: 64 AEQGL---RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDH 120
E GL +I+ + + R D + I M + GL P +F+ L+ + +
Sbjct: 378 TENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEM 437
Query: 121 EGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLIL 179
+ A +K+ GV P ET L +G + +IL ME+I ++ L
Sbjct: 438 DKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSL 497
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR 239
+ L ++ + +A V G+ ++Y+++I C G +AL EM +
Sbjct: 498 INCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEI 557
Query: 240 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 299
T +N L+ C ++ A + PD TYN +I Y A
Sbjct: 558 SPTLVTYNVLI--DGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANA------ 609
Query: 300 QDVAELLGMMVEDHKRL--QPNVKTYALLVECFTK 332
+V++ LG + E K L +P V+TY L+ +K
Sbjct: 610 GNVSKCLG-LYETMKNLGIKPTVRTYHPLISGCSK 643
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 135/333 (40%), Gaps = 26/333 (7%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R V+ +M+ G+SP +++ L+V N + A S GV P + AL
Sbjct: 185 RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI 244
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
L G + L+ M+ + IL+ RN + +A KV + G
Sbjct: 245 GLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCV 304
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y+ ++ CK S A E+ EM G + F L++ + G A
Sbjct: 305 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 364
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
FE M + +KPD TYN +I + + ++V EL M+ +R+ PN +Y +
Sbjct: 365 FEMMI--QRNLKPDVVTYNTLIDGFCKGSEMEKVN---ELWNDMIS--RRIYPNHISYGI 417
Query: 326 LVECFTKYCAVTEAIRHFRAL--QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELL 383
L+ + V+EA R + + + +E T + N ++ CR G ++
Sbjct: 418 LINGYCNMGCVSEAFRLWDEMVEKGFE-ATIITCNT---------IVKGYCRAGNAVKAD 467
Query: 384 EALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
E L M + + P + Y TL++ +I+
Sbjct: 468 EFLSNMLL--KGIVPDGI----TYNTLINGFIK 494
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ LV+ +++ A +++ + G++ ++MI CK N +ME G
Sbjct: 68 LLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKG 127
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+N L++ G+ E AF ++M G+ +KP TYN +I + Y R
Sbjct: 128 VFPDVVTYNTLINAYCRQGLLEEAFELMDSMS-GKG-LKPCVFTYNAIINGLCKTGKYLR 185
Query: 299 VQDVA-ELLGMMVEDHKRLQPNVKTY-ALLVEC 329
+ V E+L + + P+ TY LLVEC
Sbjct: 186 AKGVLDEMLKI------GMSPDTATYNILLVEC 212
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 110/271 (40%), Gaps = 29/271 (10%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARL 148
+++ +M G+ P +F L+ Y+ +G+ A+ + + ++P T L
Sbjct: 327 DELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDG 386
Query: 149 FGSKGLATKGLEILAAMEKIN-----------YDIRQAWLILVEELVRNKYLEDANKVFL 197
F KG E MEK+N Y ++ IL+ + +A +++
Sbjct: 387 F------CKGSE----MEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWD 436
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ G AT + ++ C+AG+ A E M G + +N L++
Sbjct: 437 EMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEE 496
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+ AFA ME + PD TYN ++ ++R R+Q+ ++ M+E + +
Sbjct: 497 NMDRAFALVNKME--NSGLLPDVITYNVILNGFSRQ---GRMQEAELIMLKMIE--RGVN 549
Query: 318 PNVKTYALLVECFTKYCAVTEAIR-HFRALQ 347
P+ TY L+ + EA R H LQ
Sbjct: 550 PDRSTYTSLINGHVTQNNLKEAFRVHDEMLQ 580
>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 924
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/347 (19%), Positives = 136/347 (39%), Gaps = 24/347 (6%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ + + + + + ++ +M G+ +H ++ YT+ G+ E + +R
Sbjct: 412 IIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFER 471
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNK 187
G P + L L+ G +K LE+ ME I ++++ + +L+ ++ K
Sbjct: 472 LKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMK-TYSMLINGFLKLK 530
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+A +F K GL+ +Y+ +I C G A+ + EM+ T+ F
Sbjct: 531 DWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFM 590
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ A G + A F+ M P T+N +I ++ ++ + +
Sbjct: 591 PIIHGFARAGEMKRALDVFDMMR--RSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMA 648
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
+ + PN TY ++ + +A +F L++ V E
Sbjct: 649 L-----AGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEA------- 696
Query: 368 LYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
L+A C+ GR+ L + M+ N +P + Y L+ W
Sbjct: 697 -LLKACCKSGRMQSALAVTKEMSAQN--IPRNTFV----YNILIDGW 736
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 9/222 (4%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R + +++ +M AG+SP ++ ++ Y GD A + G++ T
Sbjct: 635 RQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTY 694
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGA 200
AL + G L + M N R ++ IL++ R + +A + +
Sbjct: 695 EALLKACCKSGRMQSALAVTKEMSAQNIP-RNTFVYNILIDGWARRGDVWEAADLMQQMK 753
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+GG++ Y I CKAGD A ++ EME +G + L+ A +PE
Sbjct: 754 QGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPE 813
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAY----TRAESYDR 298
A F+ M+ +KPD Y+C++ A T E+Y R
Sbjct: 814 KALRCFQEMKLAG--LKPDKAVYHCLMTALLSRATVTEAYVR 853
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 102/276 (36%), Gaps = 41/276 (14%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
FM + AR + R DV M +G P +F+ L++ E A+ L
Sbjct: 589 FMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMA 648
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLED 191
AGV P T + + + G K E
Sbjct: 649 LAGVSPNEHTYTTIMHGYAALGDTGKAFE------------------------------- 677
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
F + GL+ Y+ ++ CK+G +AL + EM A TF +N L+
Sbjct: 678 ---YFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILID 734
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
A G A + M+ G +KPD TY I A +A R + E +
Sbjct: 735 GWARRGDVWEAADLMQQMKQGG--VKPDIHTYTSFINACCKAGDMLRASKMMEEM----- 787
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ ++PNVKTY L+ + + +A+R F+ ++
Sbjct: 788 ETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMK 823
>gi|224127907|ref|XP_002320193.1| predicted protein [Populus trichocarpa]
gi|222860966|gb|EEE98508.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 21/243 (8%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
+I+D+ +GL+P S+ L+ + NG++ ++ + + G++P T+ +L R G
Sbjct: 80 LIHDIKISGLTPNVVSWTALISGCSQNGNYSESIEAFVQMQEEGIKPNSATISSLLRTCG 139
Query: 151 SKGLATKGLEI--LAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
L KG EI L+ + D+ A L++ ++ LE A+KVF K T
Sbjct: 140 GLSLLQKGKEIHCLSIRKSFIEDLYVA-TALIDTYSKSGDLESAHKVFWSAEK-----TL 193
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
++ MI G + + M+ AG + F LLS G+ E + F+
Sbjct: 194 ASWNCMIMGFAINGCGREVIALLDGMQRAGILPDAITFTALLSGCKNSGLVEEGWKCFDM 253
Query: 269 MEYGEDY-MKPDTETYNCVIQAYTRA----ESYDRVQDV-----AELLGMMVEDHKRLQP 318
M DY +KP E Y+C+ RA E++D +Q + A + G M+ R+
Sbjct: 254 MS--NDYGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKPDASVWGAMLGS-CRIHG 310
Query: 319 NVK 321
N++
Sbjct: 311 NIE 313
>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 775
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 34/227 (14%)
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
+NK F G+ + Y++MI CK GD A + ++M+ G +N L+
Sbjct: 236 SNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLID 295
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
G+ + +F FE M+ + +PD TYN +I + + Y+++ L M
Sbjct: 296 GYGKLGLLDESFCLFEEMK--DVGCEPDVITYNALINCFCK---YEQMPKAFHFLHEM-- 348
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ---------NYEGGTKVLHNEGNF 362
+ L+PNV TY+ L++ K + +AI+ ++ Y G
Sbjct: 349 KNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYL 408
Query: 363 GDPLSL------------------YLRALCREGRIIELLEALEAMAK 391
D L L L LC+EGR++E + AM K
Sbjct: 409 SDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIK 455
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 10/239 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ Y++++ SP P +F L+ +G + A + G RP L +
Sbjct: 881 DLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGY 940
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G G E M E I D++ ++ ILV+ L ++DA F + + GL
Sbjct: 941 GKLGHVDTACEFFKRMVKEGIRPDLK-SYTILVDILCIAGRVDDALHYFEKLKQAGLDPD 999
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+LMI ++ AL + +EM+ G + + +N L+ G+ E A +E
Sbjct: 1000 LVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYE 1059
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+++ +KP+ TYN +I+ YT + + + + + MMV PN T+A L
Sbjct: 1060 ELQFIG--LKPNVFTYNALIRGYTLSGNSELAYGIYK--KMMVGG---CDPNTGTFAQL 1111
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 99/236 (41%), Gaps = 10/236 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M++ GL P ++F L+VA + + M L+ S G+RP T R+ G G
Sbjct: 220 MVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGK 279
Query: 155 ATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ I+ M+ D+ + +L++ L + L+DA +F + + Y
Sbjct: 280 IDEAYRIMKRMDDDGCGPDV-VTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYV 338
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
++ + G +I EMEA G F L++ G AF + M
Sbjct: 339 TLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMR-- 396
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+ + P+ TYN +I RA +R+ D +L M + ++P TY LL++
Sbjct: 397 KQGVLPNLHTYNTLISGLLRA---NRLDDALDLFSNM--ESLGVEPTAYTYILLID 447
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 100/266 (37%), Gaps = 17/266 (6%)
Query: 85 APRVN---DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET 141
A R+N D++ M G+ P +++ L+ + A+ S GV P T
Sbjct: 382 AGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYT 441
Query: 142 LIALARLFGSKGLATKGLEILAAMEK----INYDIRQAWLILVEELVRNKYLEDANKVFL 197
I L G G K LE M+ N A L + E+ R L +A +F
Sbjct: 442 YILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGR---LGEAKAMFN 498
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
GL Y++M+ K G A+++ EM N L+ G
Sbjct: 499 ELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAG 558
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
E A+ F ME E + P TYN ++ + ++Q +L M +
Sbjct: 559 RVEEAWQMFCRME--EMNLAPTVVTYNILLAGLGKE---GQIQKAVQLFESM--NGHGCS 611
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHF 343
PN T+ L++C K V A++ F
Sbjct: 612 PNTITFNTLLDCLCKNDEVDLALKMF 637
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 103/269 (38%), Gaps = 50/269 (18%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+++ L ++K A VF++ K G++ T ++Y+L+I + + A + EM++A
Sbjct: 760 IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSA 819
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G TF +N L+ G F ++ M KP+T TYN VI ++ D
Sbjct: 820 GCAPDTFTYNSLIDAHGKSGKINELFDLYDEML--TRGCKPNTITYNMVISNLVKSNRLD 877
Query: 298 --------------------------------RVQDVAELLGMMVEDHKRLQPNVKTYAL 325
R+ D E+ MV H +PN Y +
Sbjct: 878 KAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMV--HYGCRPNSAIYNI 935
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI---IEL 382
LV + K V A F+ + EG L + ++ + LC GR+ +
Sbjct: 936 LVNGYGKLGHVDTACEFFKRMVK-EGIRPDLKS-------YTILVDILCIAGRVDDALHY 987
Query: 383 LEALEAMAKDNQPVPPRAMI--LSRKYRT 409
E L+ D V MI L R RT
Sbjct: 988 FEKLKQAGLDPDLVAYNLMINGLGRSQRT 1016
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 17/212 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L+R L+DA +F G+ T Y L+I K+G ALE +M+A G
Sbjct: 410 LISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARG 469
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
N L A G A A F ++ + PD+ TYN +++ Y+ +
Sbjct: 470 IAPNIVACNASLYSLAEMGRLGEAKAMFNELK--SSGLAPDSVTYNMMMKCYS------K 521
Query: 299 VQDVAELLGMMVEDHK-RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
V V E + ++ E K + +P+V L++ K V EA + F ++ V+
Sbjct: 522 VGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVV- 580
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
++ L L +EG+I + ++ E+M
Sbjct: 581 -------TYNILLAGLGKEGQIQKAVQLFESM 605
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 96/237 (40%), Gaps = 21/237 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L+++ + ++A +V+ R GL+ + + + ++ K + + + EME+ G
Sbjct: 200 LIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMG 259
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ + + G + A+ + M+ +D PD TY +I A A D
Sbjct: 260 LRPNIYTYTICIRVLGRDGKIDEAYRIMKRMD--DDGCGPDVVTYTVLIDALCTARKLD- 316
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
+ M HK P+ TY L++ F+ C + + +G +
Sbjct: 317 -DAMCLFTKMKSSSHK---PDKVTYVTLLDKFSD-CGHLDKVEKIWTEMEADGYAPDVVT 371
Query: 359 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
++ + ALC+ GRI E + L+ M K Q V P Y TL+S +
Sbjct: 372 -------FTILVNALCKAGRINEAFDLLDTMRK--QGVLPNL----HTYNTLISGLL 415
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/383 (23%), Positives = 157/383 (40%), Gaps = 38/383 (9%)
Query: 29 AMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVV----------SAAEQGLR---LIFMEE 75
A+ E RR+ + Q K +++ST G + +A ++G F
Sbjct: 172 AVRCFEFAVRRESGKNEQGKLASAMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSAL 231
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG-DHEGAMHSLKRELSAG 134
+ + R+ V M + GL P +++ ++ A G + + + LS G
Sbjct: 232 ISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNG 291
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDA 192
V+P T +L + GL + +AM + I+ DI + L++ + + ++ A
Sbjct: 292 VQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIF-TYNTLLDAVCKGGQMDLA 350
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
++ + Y MI K G +AL + EM+ G +N LLS
Sbjct: 351 FEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSV 410
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
A G E A + ME ++ D TYN ++ Y + YD V+ V E +
Sbjct: 411 YAKLGRFEQALDVCKEMENAG--IRKDVVTYNALLAGYGKQYRYDEVRRVFEEM-----K 463
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLY 369
R+ PN+ TY+ L++ ++K EA+ FR + + G K VL+ S
Sbjct: 464 RGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFK--QAGLKADVVLY---------SAL 512
Query: 370 LRALCREGRIIELLEALEAMAKD 392
+ ALC+ G + + L+ M K+
Sbjct: 513 IDALCKNGLVESSVTLLDEMTKE 535
Score = 40.4 bits (93), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 93/218 (42%), Gaps = 13/218 (5%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV---RPLHETLIALA 146
+++ +M + P ++ ++ Y G + A++ GV R + TL+++
Sbjct: 352 EIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSV- 410
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLEDANKVFLRGAKGG 203
+ G + L++ ME N IR+ + L+ + ++ +VF +G
Sbjct: 411 --YAKLGRFEQALDVCKEME--NAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGR 466
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
+ Y +I K G + A+E+ E + AG A ++ L+ G+ E +
Sbjct: 467 VSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSV 526
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
+ M ++ ++P+ TYN +I A+ R+ S V D
Sbjct: 527 TLLDEMT--KEGIRPNVVTYNSIIDAFGRSASAQCVVD 562
>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 889
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 10/239 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ GL+P P + L++ ++NG + A + + + G+ + L F +G
Sbjct: 502 MVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGD 561
Query: 155 ATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ ME+ I D+ A+ ++ L + +E+A VFL + GL + Y+
Sbjct: 562 VVGAQSLWGEMERRGIFPDV-VAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYN 620
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I CK G + AL++ M G + F N ++ G A F +M
Sbjct: 621 SLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMH-- 678
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ + PD TYN +I Y +A +D V + L+ M P++ TY + + F
Sbjct: 679 QTGLSPDIITYNTLINGYCKA--FDMV-NADNLVNRMYASGS--NPDLTTYNIRIHGFC 732
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
ED +++ + GL ++D+ ++ C AG A+E +M G + FN +
Sbjct: 423 EDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSV 482
Query: 250 LSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
++ + G+ + AF ++ M +G + P T + ++ + R+Q+ EL+G
Sbjct: 483 IAAYSQAGLEDKAFEAYKLMVHFG---LTPSPSTCSSLLMGLSIN---GRLQEATELIGQ 536
Query: 309 MVEDHKRLQPNVKTYALLVECFTK 332
M+E K L N + +L++ F K
Sbjct: 537 MIE--KGLSVNNMAFTVLLDKFFK 558
>gi|293335893|ref|NP_001168260.1| uncharacterized protein LOC100382024 [Zea mays]
gi|223947083|gb|ACN27625.1| unknown [Zea mays]
gi|414865479|tpg|DAA44036.1| TPA: hypothetical protein ZEAMMB73_641935 [Zea mays]
Length = 581
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 12/217 (5%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+ GL P ++ + T G E AM + R L AG++P +LI + S G
Sbjct: 317 EMLQKGLDPSEDIMKAIIASCTKEGKWEFAMSTFSRMLRAGMKP---SLILFNSIINSLG 373
Query: 154 LATK---GLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGG--LRAT 207
A + + +EK Q W L+ L R+ D K+F G KG
Sbjct: 374 KAGQDELAFRMYHLLEKSGLKPDQYTWSALLLALYRSGRCWDCLKLF-HGIKGKHPTLLN 432
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
D +Y+ + K G + L++ + ME G + +NH++ P+VA ++
Sbjct: 433 DHLYNTALMSCEKLGQWEHGLQLLWLMEKRGLKLSVVSYNHVIGACEVASKPKVALKVYQ 492
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
M PDT T+ VI+A + V+D+ E
Sbjct: 493 RMI--NQRCSPDTFTHLSVIRACIWGSLWTEVEDILE 527
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 20/241 (8%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M + P ++ L+ +G E AM+ LK G+ P + L F +G
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383
Query: 155 ATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+E L M + +NY+ ++ L +N + A ++F + + G
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNT------VLATLCKNGKADQALEIFGKLGEVGCSPN 437
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ M + +GD AL + EM + G +N ++SC G+ + AF
Sbjct: 438 SSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLV 497
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
+M E P TYN V+ + +A R++D +L MV + R PN TY +L+
Sbjct: 498 DMRSCE--FHPSVVTYNIVLLGFCKAH---RIEDAINVLESMVGNGCR--PNETTYTVLI 550
Query: 328 E 328
E
Sbjct: 551 E 551
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 120/309 (38%), Gaps = 46/309 (14%)
Query: 117 NGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAW 176
+G++ ++H L+ + G P L + F + K + ++ +EK A+
Sbjct: 102 SGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAY 161
Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
L+ + ++DA +V R Y++MI C G AL++ ++ +
Sbjct: 162 NALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLS 221
Query: 237 AGRMATTFHFNHLLSCQATC---GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
T + L+ +AT G+ E E + G +KPD TYN +I+ +
Sbjct: 222 DNCQPTVITYTILI--EATMLEGGVDEALKLMDEMLSRG---LKPDMFTYNTIIRGMCKE 276
Query: 294 ESYDRVQDVAE----------------LLGMMVEDHK--------------RLQPNVKTY 323
DR ++ LL ++ K + PNV TY
Sbjct: 277 GMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTY 336
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELL 383
++L+ + + EA+ + ++ K L + DPL + A CREGR+ +
Sbjct: 337 SILITTLCRDGKIEEAMNLLKLMKE-----KGLTPDAYSYDPL---IAAFCREGRLDVAI 388
Query: 384 EALEAMAKD 392
E LE M D
Sbjct: 389 EFLETMISD 397
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 117/310 (37%), Gaps = 36/310 (11%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +++ P ++ L+ A L G + A+ + LS G++P T + R
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274
Query: 151 SKGLATKGLEILAAME-------KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
+G+ + E++ +E I+Y+I L+ L+ E+ K+ +
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNI------LLRALLNQGKWEEGEKLMTKMFSEK 328
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
Y ++I C+ G A+ + M+ G + ++ L++ G +VA
Sbjct: 329 CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAI 388
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
E M D PD YN V+ + D+ ++ LG PN +Y
Sbjct: 389 EFLETMI--SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLG-----EVGCSPNSSSY 441
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP----LSLYLRALCREGRI 379
T + A+ + RAL +L N DP + + LCREG +
Sbjct: 442 N------TMFSALWSSGDKIRALH------MILEMMSNGIDPDEITYNSMISCLCREGMV 489
Query: 380 IELLEALEAM 389
E E L M
Sbjct: 490 DEAFELLVDM 499
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 1/156 (0%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+N A + ++ + G SP S++ + A +GD A+H + +S G+ P
Sbjct: 414 CKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDE 473
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLR 198
T ++ +G+ + E+L M + + I++ + +EDA V
Sbjct: 474 ITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLES 533
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
G R + Y ++I AG + A+E+A ++
Sbjct: 534 MVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569
>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
Length = 859
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 103/245 (42%), Gaps = 9/245 (3%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V+ M+ GL P +++GLV Y GD EG L+ GV T L R +
Sbjct: 247 EVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSERGVSRNVVTCTMLMRGY 306
Query: 150 GSKGLATKGLEILAAMEKINYDI--RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
KG + ++L +E+ + + + +LV+ + +EDA ++ + GL+
Sbjct: 307 CKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVN 366
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
I + +I CK G A + M + +N LL G AF E
Sbjct: 367 MVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCE 426
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M D + P TYN VI+ SYD D L +MVE + + PN + ++
Sbjct: 427 EML--GDGITPTVVTYNTVIKGLVDVGSYD---DALHLWHLMVE--RGVTPNEISCCTML 479
Query: 328 ECFTK 332
+CF K
Sbjct: 480 DCFFK 484
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 105/254 (41%), Gaps = 14/254 (5%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R V D++ +M GLSP ++ L+ + + A H + G P +
Sbjct: 591 RKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTP---NV 647
Query: 143 IALARLFGSKGLATKGLEILAAMEK-INYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
+ +++ S + E ++K +++DI ++LV+N +A K+ K
Sbjct: 648 VVCSKIVSSLYRDDRISEATVILDKMLDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDK 707
Query: 202 GGL---RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+ + + +Y++ I CK+G A + + + G + F + L+ + G
Sbjct: 708 SDICNSLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGN 767
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ AF + M E + P+ YN +I + + DR Q + L K L P
Sbjct: 768 VDEAFKLRDEML--EKGLIPNITIYNALINGLCKLGNIDRAQRLFYKL-----YQKGLVP 820
Query: 319 NVKTYALLVECFTK 332
N TY +L+ C+ +
Sbjct: 821 NAVTYNILIGCYCR 834
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 20/241 (8%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M + P ++ L+ +G E AM+ LK G+ P + L F +G
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383
Query: 155 ATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+E L M + +NY+ ++ L +N + A ++F + + G
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNT------VLATLCKNGKADQALEIFGKLGEVGCSPN 437
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ M + +GD AL + EM + G +N ++SC G+ + AF
Sbjct: 438 SSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLV 497
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
+M E P TYN V+ + +A R++D +L MV + R PN TY +L+
Sbjct: 498 DMRSCE--FHPSVVTYNIVLLGFCKAH---RIEDAINVLESMVGNGCR--PNETTYTVLI 550
Query: 328 E 328
E
Sbjct: 551 E 551
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 120/309 (38%), Gaps = 46/309 (14%)
Query: 117 NGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAW 176
+G++ ++H L+ + G P L + F + K + ++ +EK A+
Sbjct: 102 SGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAY 161
Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
L+ + ++DA +V R Y++MI C G AL++ ++ +
Sbjct: 162 NALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLS 221
Query: 237 AGRMATTFHFNHLLSCQATC---GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
T + L+ +AT G+ E E + G +KPD TYN +I+ +
Sbjct: 222 DNCQPTVITYTILI--EATMLEGGVDEALKLMDEMLSRG---LKPDMFTYNTIIRGMCKE 276
Query: 294 ESYDRVQDVAE----------------LLGMMVEDHK--------------RLQPNVKTY 323
DR ++ LL ++ K + PNV TY
Sbjct: 277 GMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTY 336
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELL 383
++L+ + + EA+ + ++ K L + DPL + A CREGR+ +
Sbjct: 337 SILITTLCRDGKIEEAMNLLKLMKE-----KGLTPDAYSYDPL---IAAFCREGRLDVAI 388
Query: 384 EALEAMAKD 392
E LE M D
Sbjct: 389 EFLETMISD 397
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 117/310 (37%), Gaps = 36/310 (11%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +++ P ++ L+ A L G + A+ + LS G++P T + R
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274
Query: 151 SKGLATKGLEILAAME-------KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
+G+ + E++ +E I+Y+I L+ L+ E+ K+ +
Sbjct: 275 KEGMVDRAFEMVRNLELKGSEPDVISYNI------LLRALLNQGKWEEGEKLMTKMFSEK 328
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
Y ++I C+ G A+ + M+ G + ++ L++ G +VA
Sbjct: 329 CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAI 388
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
E M D PD YN V+ + D+ ++ LG PN +Y
Sbjct: 389 EFLETMI--SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLG-----EVGCSPNSSSY 441
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP----LSLYLRALCREGRI 379
T + A+ + RAL +L N DP + + LCREG +
Sbjct: 442 N------TMFSALWSSGDKIRALH------MILEMMSNGIDPDEITYNSMISCLCREGMV 489
Query: 380 IELLEALEAM 389
E E L M
Sbjct: 490 DEAFELLVDM 499
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 1/156 (0%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+N A + ++ + G SP S++ + A +GD A+H + +S G+ P
Sbjct: 414 CKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDE 473
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLR 198
T ++ +G+ + E+L M + + I++ + +EDA V
Sbjct: 474 ITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLES 533
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
G R + Y ++I AG + A+E+A ++
Sbjct: 534 MVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569
>gi|224141051|ref|XP_002323888.1| predicted protein [Populus trichocarpa]
gi|222866890|gb|EEF04021.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 10/214 (4%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+ GL P + H ++ A + G+ + A++ + L G++P AL L G G
Sbjct: 214 EMVQNGLKPREDTLHAVIGACSKKGNWDLALNIFQNMLDHGLKPNLIACNALINLLGKAG 273
Query: 154 ---LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF--LRGAKGGLRATD 208
LA K +IL ++ + W L+ L R DA ++F L+ + L +
Sbjct: 274 EIKLAFKVFKILKSLGHTPDEY--TWNALLSGLYRANQHVDALQLFERLKREQNSL-LNE 330
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+Y+ + K G AL++ ++ EA+G +T +N + PEVA +E+
Sbjct: 331 HLYNTALMSCQKLGLWDRALQLVWQAEASGLSVSTASYNLAIGACEVARKPEVALEVYEH 390
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
M + + PDT TY +I++ A +D V+++
Sbjct: 391 MVHQK--CPPDTFTYLSLIRSCIWASLWDEVEEI 422
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 45/268 (16%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L++ RN + D+ DM+ G+SP SF L+ + NG + A+ + ++G+
Sbjct: 297 LVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGL 356
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDAN 193
P + L + G+ ++ LEI M + D+ A+ ++ L + K L DAN
Sbjct: 357 VPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDV-VAYNTILNGLCKKKLLADAN 415
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
+F + G+ + +I CK G+ AL + M
Sbjct: 416 ALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMT------------------ 457
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
+ +KPD TYN +I + + ++ EL M+
Sbjct: 458 -------------------QKNIKPDIVTYNILIDGFCKTTEMEKAN---ELWNEMIS-- 493
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIR 341
+++ PN +YA+LV + V+EA R
Sbjct: 494 RKIFPNHISYAILVNGYCNLGFVSEAFR 521
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 109/262 (41%), Gaps = 11/262 (4%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARL 148
N + +M+ G+ P +F L+ + G+ A+ ++P T L
Sbjct: 415 NALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDG 474
Query: 149 FGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
F K E+ M KI + ++ ILV ++ +A +++ + G++
Sbjct: 475 FCKTTEMEKANELWNEMISRKI-FPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKP 533
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
T + +I C++GD S A E +M + G + +N L++ + AF
Sbjct: 534 TLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLI 593
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
ME ++PD TYN ++ + R R+Q+ +L M+E + + P+ TY L
Sbjct: 594 NKME--TKGLQPDVVTYNVILNGFCRQ---GRMQEAELILRKMIE--RGIDPDRSTYTTL 646
Query: 327 VECFTKYCAVTEAIR-HFRALQ 347
+ + + EA R H LQ
Sbjct: 647 INGYVSQDNLKEAFRFHDEMLQ 668
Score = 39.7 bits (91), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 10/152 (6%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ LV+ +++ A +V+ A+ G+ ++M+ CK + +ME G
Sbjct: 156 LLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKG 215
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
A +N L++ G+ AF +M G+ +KP TYN VI + Y R
Sbjct: 216 IFADIVTYNTLINAYCREGLLGEAFEVMNSMS-GKG-LKPTLFTYNAVINGLCKKGRYVR 273
Query: 299 VQDV-AELLGMMVEDHKRLQPNVKTY-ALLVE 328
+ V E+L + L P+ TY LLVE
Sbjct: 274 AKGVFNEMLSI------GLSPDTTTYNTLLVE 299
>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Glycine max]
Length = 576
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 12/241 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
++ + P ++ L+ A+ ++ A + + L A P +T L + + GL
Sbjct: 146 LLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGL 205
Query: 155 ATKGLEILAAMEKINYDIRQAWLIL---VEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
K + A M NY + + ++ + L++ + A ++F R K + T E Y
Sbjct: 206 LEKAEAVFAEMR--NYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETY 263
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
++I KAG AL++ +EM + + L++ A G+ E A FE M+
Sbjct: 264 TMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQ- 322
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
E ++PD YN +++AY+RA AE+ +M H +P+ +Y +LV+ +
Sbjct: 323 -EAGLEPDVYAYNALMEAYSRA---GYPYGAAEIFSLM--QHMGCEPDRASYNILVDAYG 376
Query: 332 K 332
K
Sbjct: 377 K 377
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 133/311 (42%), Gaps = 20/311 (6%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
+ ++M++ P ++ LV A+ G E A ++ AG+ P AL +
Sbjct: 282 LFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYS 341
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G EI + M+ + + R ++ ILV+ + + +DA VF + G+ T +
Sbjct: 342 RAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMK 401
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ ++++ K G + EI +M +G T+ N +L+ G M
Sbjct: 402 SHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVM 461
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
E G D TYN +I Y +A +R++D+ +LL K L+P+V T+
Sbjct: 462 EKGS--YVADISTYNILINRYGQAGFIERMEDLFQLL-----PSKGLKPDVVTWT----- 509
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF--GDPLSLYLRALCREGRIIELLEALE 387
++ A ++ + + L+ +E + ++G + G + L A E + ++ +
Sbjct: 510 -SRIGAYSKKKLYLKCLEIFEE----MIDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIR 564
Query: 388 AMAKDNQPVPP 398
M KD + V P
Sbjct: 565 TMHKDMKTVLP 575
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 25/250 (10%)
Query: 74 EELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA 133
E + RN P + V+Y+ GL G G+ + A KR
Sbjct: 210 EAVFAEMRNYGLPS-SAVVYNAYINGLMKG--------------GNSDKAEEIFKRMKKD 254
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLE 190
+P ET L L+G G + L++ M +++D + + LV R E
Sbjct: 255 ACKPTTETYTMLINLYGKAGKSFMALKLFHEM--MSHDCKPNICTYTALVNAFAREGLCE 312
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
A +VF + + GL Y+ ++ +AG A EI M+ G +N L+
Sbjct: 313 KAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILV 372
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
G + A A F++M+ + P +++ ++ AY++ S ++ + E+L M
Sbjct: 373 DAYGKAGFQDDAEAVFKDMK--RVGITPTMKSHMVLLSAYSKMGSVNKCE---EILNQMC 427
Query: 311 EDHKRLQPNV 320
+ +L V
Sbjct: 428 KSGLKLDTYV 437
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 126/307 (41%), Gaps = 21/307 (6%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ +M+ G+SP ++ LV + + G A+ L + + P T L
Sbjct: 219 DLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDAL 278
Query: 150 GSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+G + +LA M K +N D+ + L++ + +A +VF + G+
Sbjct: 279 CKEGKVKEAENVLAVMVKACVNLDV-VVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPD 337
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y +MI CK AL + E+ + T + L+ C G + F+
Sbjct: 338 VHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFD 397
Query: 268 NM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
M + G+ PD TYN +I A + DR L M + + ++PNV T+ +L
Sbjct: 398 EMLDRGQ---PPDVITYNNLIDALCKNGHLDR---AIALFNKMKD--QAIRPNVYTFTIL 449
Query: 327 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEAL 386
++ K + A+ F+ L V ++ + LC+EG + E L AL
Sbjct: 450 LDGLCKVGRLKNALEFFQDLLTKGYCLNV--------RTYTVMINGLCKEGLLDEAL-AL 500
Query: 387 EAMAKDN 393
++ +DN
Sbjct: 501 QSRMEDN 507
>gi|108706807|gb|ABF94602.1| expressed protein [Oryza sativa Japonica Group]
gi|125585367|gb|EAZ26031.1| hypothetical protein OsJ_09884 [Oryza sativa Japonica Group]
Length = 582
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 97/220 (44%), Gaps = 10/220 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D +M +G+ P ++ + T G E A+ + +R LSAG++P ++
Sbjct: 313 DAYQEMFKSGIDPSEDILKAIIASCTKEGKWEFALTTFRRMLSAGMKPSIIVFNSIINSL 372
Query: 150 GSKG---LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
G G LA + +L + + D + W L+ L R+ D +F +G K A
Sbjct: 373 GKAGEDELAFRMYHLLTS-SGLKPD-QYTWSALLSALYRSGRCWDVLDLF-QGIKTKHSA 429
Query: 207 --TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ +Y++ + + G + L++ + ME G + +NH++ +P+VA
Sbjct: 430 LLNNHLYNIALMSCERLGQWEHGLQLLWMMERGGLQISAVSYNHVIGACEVARMPKVALK 489
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
+ M + PDT T+ VI+A ++ V+D+ E
Sbjct: 490 VYRRMTH--RGCSPDTFTHLSVIRACIWGSLWNEVEDILE 527
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 114/308 (37%), Gaps = 50/308 (16%)
Query: 67 GLRLIFMEE---------LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLN 117
G RL F+EE L++ +++ ++ M A+GL P + + L+ +
Sbjct: 141 GSRLHFLEERDEEMLSRRLIKLSQSNKVRSATELFDSMRASGLQPSAHACNSLLACFVRR 200
Query: 118 GDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL--ATKGLEILAAMEKINYDI--- 172
G AM + G+ H + L + ++G A K + + +K N D+
Sbjct: 201 GSFADAMKVFEFMKGKGMATGHSYTLILKAVATTEGYFAALKMFDEIEESDKKNVDVIVY 260
Query: 173 -------------RQA---WL---------------ILVEELVRNKYLEDANKVFLRGAK 201
RQ W +LV V+ E A + K
Sbjct: 261 NTVISVCGRAKDWRQVERLWRRLGENSLSGTLMTYDLLVSTFVQCGQSELAVDAYQEMFK 320
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G+ +++I +IA K G AL M +AG + FN +++ G E+
Sbjct: 321 SGIDPSEDILKAIIASCTKEGKWEFALTTFRRMLSAGMKPSIIVFNSIINSLGKAGEDEL 380
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
AF + + +KPD T++ ++ A R+ R DV +L + H L N
Sbjct: 381 AFRMYHLLT--SSGLKPDQYTWSALLSALYRS---GRCWDVLDLFQGIKTKHSALLNNHL 435
Query: 322 TYALLVEC 329
L+ C
Sbjct: 436 YNIALMSC 443
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 140/365 (38%), Gaps = 58/365 (15%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
+ + LM+ + +A N V+ + + G +P ++ L+ Y G+ A+
Sbjct: 388 VLINGLMKLEKFNEA---NSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 444
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYL 189
+S G+ P TL ++ + F G + IL M + I A+ ++ L N
Sbjct: 445 VSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRF 504
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
E A + +R D + ++ CK G HS+A+E+ + + G A N L
Sbjct: 505 ESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNAL 564
Query: 250 LSCQATCGIPEVAFATFENM---------------------------------EYGEDYM 276
+ G + A + M E + +
Sbjct: 565 IHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGI 624
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR-LQPNVKTYALLVECFTKYCA 335
+PDT TYN +I R D E + + E R L PNV TY ++++ + K
Sbjct: 625 EPDTFTYNLLIHGMCRIGKLD------EAVNLWNECKSRDLVPNVYTYGVMIDGYCKADK 678
Query: 336 VTEAIRHFRAL--QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393
+ E + F L QN E + V++N +RA CR G +E + + M +
Sbjct: 679 IEEGEKLFTELLTQNLELNS-VVYNT---------LIRAYCRNGNTVEAFKLHDDM--RS 726
Query: 394 QPVPP 398
+ +PP
Sbjct: 727 KGIPP 731
Score = 42.7 bits (99), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 68/155 (43%), Gaps = 7/155 (4%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
++++ + +E+ K+F L +Y+ +I C+ G+ A ++ +M +
Sbjct: 668 VMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSK 727
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G TT ++ L+ G E A + M ++ + P+ Y +I Y + D
Sbjct: 728 GIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMR--KEGLLPNVVCYTALIGGYCKLGQMD 785
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+V +V + + + PN TY ++++ ++K
Sbjct: 786 KVVNVLQEM-----SSYDIHPNKITYTVMIDGYSK 815
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 125/333 (37%), Gaps = 44/333 (13%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
+++ + G+SP F + A+ G E A+ GV P ++ L
Sbjct: 301 VFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSP---NVVTYNNLI-- 355
Query: 152 KGLATKGL--EILAAMEKINYDIRQAWLI----LVEELVRNKYLEDANKVFLRGAKGGLR 205
GL G E EK+ D A LI L+ L++ + +AN V + G
Sbjct: 356 HGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFT 415
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+ +Y+ +I CK G+ +AL I +M + G + N ++ G E A
Sbjct: 416 PNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECI 475
Query: 266 FENMEYGEDYMKPDTET----YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
E M + P T + C+ + A + R E+L + ++PN
Sbjct: 476 LEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLR-----EML------LRNMRPNDG 524
Query: 322 TYALLVECFTKYCAVTEAIR-HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 380
LV K ++A+ FR L+ G V N + LC+ G +
Sbjct: 525 LLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNA---------LIHGLCKTGNMQ 575
Query: 381 ELLEALEAMAKDNQPVPPRAMILSR-KYRTLVS 412
E + L+ M + R +L + Y TL+S
Sbjct: 576 EAVRLLKKMLE-------RGFVLDKITYNTLIS 601
>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 108/238 (45%), Gaps = 22/238 (9%)
Query: 145 LARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGG 203
L ++G+ + + +++ M + A +L+ L +++ + K++ + K G
Sbjct: 142 LVIVYGNSKMTHEAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLG 201
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
+ A +Y++++ CK+GD A ++ EME F +N L+S G+ A
Sbjct: 202 VVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEAL 261
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+ + ME + PD TYN +I + R R+++ +L D K + PN TY
Sbjct: 262 SVQDRMEMAG--ISPDIFTYNSLIYGFCRE---GRMREAVQLF----RDIKDVTPNHVTY 312
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEG--GTKVLHNEGNFGDPLSLYLRALCREGRI 379
L++ + + + EA+R + + + +G T + +N LR LC GR+
Sbjct: 313 TSLIDGYCRVNDLDEALR-LKEVMSEKGLYPTVITYNS---------ILRKLCEGGRL 360
Score = 39.7 bits (91), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 112/264 (42%), Gaps = 10/264 (3%)
Query: 71 IFMEELMQHA--RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
I + ++ HA ++ D + V+ +M + P +++ L+ Y G H A+
Sbjct: 206 IHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQD 265
Query: 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY 188
R AG+ P T +L F +G + +++ ++ + + + L++ R
Sbjct: 266 RMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIKDVTPN-HVTYTSLIDGYCRVND 324
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
L++A ++ ++ GL T Y+ ++ + C+ G +A + EM N
Sbjct: 325 LDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNT 384
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
L++ G A + M +K D TY +I + +A+ D+ +++ L GM
Sbjct: 385 LINAYCKIGDMRSALKVKDKMVGAG--LKLDQFTYKALIHGFCKAKEIDKAKEL--LFGM 440
Query: 309 MVEDHKRLQPNVKTYALLVECFTK 332
M P+ TY+ LV+ + K
Sbjct: 441 M---DAGFSPSYCTYSWLVDSYCK 461
>gi|242078465|ref|XP_002444001.1| hypothetical protein SORBIDRAFT_07g005650 [Sorghum bicolor]
gi|241940351|gb|EES13496.1| hypothetical protein SORBIDRAFT_07g005650 [Sorghum bicolor]
Length = 824
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 7/145 (4%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GL +Y++ + CK G+ + A+++ EM A G + H+ L++ G E A
Sbjct: 399 GLHLDGVLYNITMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLKGETENA 458
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ FE M +KPD TYN + Y+R + +V D LL MV+ + L+PN T
Sbjct: 459 WQVFEQMLKAN--IKPDVVTYNILASGYSRNGAVIKVYD---LLEHMVD--QGLEPNSLT 511
Query: 323 YALLVECFTKYCAVTEAIRHFRALQ 347
Y + + CF + ++EA F L+
Sbjct: 512 YGVAIACFCREGNLSEAEVLFNILE 536
>gi|359486048|ref|XP_002270184.2| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
chloroplastic [Vitis vinifera]
gi|298204537|emb|CBI23812.3| unnamed protein product [Vitis vinifera]
Length = 659
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 3/218 (1%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
A N + M G P + L+ AY+ +GD++ A ++ SAG+ P
Sbjct: 252 ASNNRCKEAENYFNQMKDEGHLPNVFHYSSLLNAYSADGDYKKADMLVQDMKSAGLVPNK 311
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLR 198
L L +++ GL K E+LA +E + Y + + +L++ L +++ + +A +F
Sbjct: 312 VILTTLLKVYVRGGLFEKSRELLAELEDLGYAEDEMPYCLLMDGLAKSRRILEAKSIFEE 371
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
K +++ Y +MI+ C++G A ++A + EA N +L G
Sbjct: 372 MKKKQVKSDGYCYSIMISAFCRSGLLKEAKQLARDFEATYDKYDLVMLNTMLCAYCRAGE 431
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
E M+ E + PD T++ +I+ + + + Y
Sbjct: 432 MESVMQMMRKMD--ELAISPDWNTFHILIKYFCKEKLY 467
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 114/266 (42%), Gaps = 29/266 (10%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG--------DHEGAMHSLKRELSAGV 135
DA RV D +M+ G P +++ L LNG D EG ++ ++ GV
Sbjct: 349 DALRVRD---EMVGCGCLPDVVTYNTL-----LNGLCKERRLLDAEGLLNEMRER---GV 397
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDAN 193
P T L + +G K L++ M +++ DI + L++ + R L+ AN
Sbjct: 398 PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDI-VTYNTLIDGMCRQGDLDKAN 456
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
++ + Y ++I C+ G +A EM G + +N ++
Sbjct: 457 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 516
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
G + M + + PD TYN +I Y + D++ D +LL MM +
Sbjct: 517 CRSGNVSKGQKFLQKMMVNK--VSPDLITYNTLIHGYIKE---DKMHDAFKLLNMM--EK 569
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEA 339
+++QP+V TY +L+ F+ + V EA
Sbjct: 570 EKVQPDVVTYNMLINGFSVHGNVQEA 595
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 76/364 (20%), Positives = 127/364 (34%), Gaps = 94/364 (25%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V +M G++P RSF L+ + G+ E A+ K G++P + L LF
Sbjct: 247 EVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLF 306
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+G + L M GL
Sbjct: 307 ARRGKMDHAMAYLREMRCF----------------------------------GLVPDGV 332
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC------------- 256
IY ++I C+AG S+AL + EM G + +N LL+ C
Sbjct: 333 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLN--GLCKERRLLDAEGLLN 390
Query: 257 -----GIPEVAFATFENMEYG------------------EDYMKPDTETYNCVIQAYTRA 293
G+P TF + +G ++PD TYN +I R
Sbjct: 391 EMRERGVPP-DLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQ 449
Query: 294 ESYDRVQDVAELLGMMVEDHKR-LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
D+ D+ + + H R + PN TY++L++ + V +A + N
Sbjct: 450 GDLDKANDLWD------DMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMIN---- 499
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS 412
+L N + + Y CR G + + + L+ M + V P + Y TL+
Sbjct: 500 KGILPNIMTYNSIIKGY----CRSGNVSKGQKFLQKMMVNK--VSPDLI----TYNTLIH 549
Query: 413 SWIE 416
+I+
Sbjct: 550 GYIK 553
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
++M+ CKA + + EME N ++ + G E A A ++M
Sbjct: 160 NIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMV- 218
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+KP TYN V++ R+ +D+ +V + + D + P+V+++ +L+ F
Sbjct: 219 -SKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM-----DDFGVAPDVRSFTILIGGFC 272
Query: 332 KYCAVTEAIRHFRALQN 348
+ + EA++ ++ +++
Sbjct: 273 RVGEIEEALKIYKEMRH 289
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 91/435 (20%), Positives = 155/435 (35%), Gaps = 73/435 (16%)
Query: 25 PIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRL-------IFMEELM 77
PIR A+ +R + Q H + V+ + +R+ +F + L
Sbjct: 4 PIRYAIPKFSISSRFFGHFQPQNPHKNCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLG 63
Query: 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP 137
R P + + + G+SP +F L+ Y A L L +G +P
Sbjct: 64 AIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQP 123
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVF 196
T + F G+ K L+ + Y Q + L+ L +N ++ A +
Sbjct: 124 NLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLL 183
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
K ++ +Y +I CK G S+AL + ++ G + +N L+ +
Sbjct: 184 QEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSV 243
Query: 257 G----IPEVAFATFENMEYGEDYM-----------------------------KPDTETY 283
G + ++ +DY KPD TY
Sbjct: 244 GRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTY 303
Query: 284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
N +++ Y E+ V + EL MV+ + L+P+V Y +L++ + K V EA+ F
Sbjct: 304 NALMEGYCSREN---VHEARELFNRMVK--RGLEPDVLNYNVLIDGYCKTKMVDEAMVLF 358
Query: 344 RALQN---------YEGGTKVLHNEGNFGD------------------PLSLYLRALCRE 376
+ L N Y L N G ++ + ALC+E
Sbjct: 359 KELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKE 418
Query: 377 GRIIELLEALEAMAK 391
GRI+E L L M K
Sbjct: 419 GRILEALGVLVMMMK 433
Score = 44.7 bits (104), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 128/315 (40%), Gaps = 30/315 (9%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V ++ M+ + P +F+ L+ A G A L G +P T AL
Sbjct: 249 VTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALME 308
Query: 148 LFGSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
+ S+ + E+ M K +NY++ L++ + K +++A +F
Sbjct: 309 GYCSRENVHEARELFNRMVKRGLEPDVLNYNV------LIDGYCKTKMVDEAMVLFKELC 362
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IP 259
L T Y+ +I C +G S+ ++ EM + + +N L+ G I
Sbjct: 363 NKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRIL 422
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
E M+ G +KP+ TYN ++ Y + + +D+ MV+ L+P+
Sbjct: 423 EALGVLVMMMKKG---VKPNIVTYNAMMDGYCLRNNVNVAKDI---FNRMVK--SGLEPD 474
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 379
+ Y +L+ + K V EAI F+ +++ ++ + ++ + LC GRI
Sbjct: 475 ILNYNVLINGYCKTEMVDEAIVLFKEMRH----KNLIPDIASYNS----LIDGLCNLGRI 526
Query: 380 IELLEALEAMAKDNQ 394
+ E L+ M Q
Sbjct: 527 PHVQELLDEMCDSGQ 541
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 129/329 (39%), Gaps = 51/329 (15%)
Query: 60 VVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGD 119
V+ A +G+RL +R AP ++ AGL P + F+ L+ G+
Sbjct: 72 VLLALRRGIRLEPTSCTGLMSRFPTAPEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGE 131
Query: 120 HEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI- 178
A + S GVR T+++ + G+ G L E ++ + +A +
Sbjct: 132 LASAQNVFDEMQSRGVR---RTVVSFNTMI--SGMCRAG--DLDGAETLHRRMSEAGVTP 184
Query: 179 -------LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIA 231
L++ L R +EDA VF + G++ ++ ++I CK GD LE+
Sbjct: 185 DVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELH 244
Query: 232 YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 291
EM G +N +++ C ++ A+ +E ++PDT TY +I Y
Sbjct: 245 REMRERGVRPDAVTYNAIVN--GLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYC 302
Query: 292 RAESYD--------------------------------RVQDVAELLGMMVEDHKRLQPN 319
+ E D R D +LG M+E L+P+
Sbjct: 303 KEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMME--AGLEPD 360
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRALQN 348
TY ++++ F + V +R + +QN
Sbjct: 361 NTTYTMVIDAFCRKGDVKTGLRLLKEMQN 389
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 105/260 (40%), Gaps = 13/260 (5%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
++F + H + DA + ++ +M G+ P +++ +V D + A +
Sbjct: 222 VVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVE 281
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNK 187
SAG+RP T L + + +EI M E + D + L+ L +
Sbjct: 282 MRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLD-EVTYTALISGLSKAG 340
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
DA +V + GL + Y ++I C+ GD L + EM+ GR +N
Sbjct: 341 RSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYN 400
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
+++ C + ++ A + PD TYN ++ + + + +V D+ EL
Sbjct: 401 VIMN--GFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCK---HGKVTDIEEL-- 453
Query: 308 MMVEDHKRLQPNVKTYALLV 327
+ K P++ Y +V
Sbjct: 454 ---KSAKGTVPDLGVYTSIV 470
>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Glycine max]
Length = 693
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 127/305 (41%), Gaps = 25/305 (8%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+++ +M GL+P ++ + +V T G E A + + GV+P + + +
Sbjct: 153 EMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGY 212
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G + L M + + + A L ++V E ++ A F R + GLR
Sbjct: 213 CKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNL 272
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+ MI CK G A E+ EM G + L+ G E AF F
Sbjct: 273 INFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLK 332
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+ E++ KP+ TY +I Y R E +R + LL M E + L PN TY L++
Sbjct: 333 LVRSENH-KPNVLTYTAMISGYCRDEKMNRAE---MLLSRMKE--QGLAPNTNTYTTLID 386
Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTKVLH--NEGNFGDPLSLY---LRALCREGRIIELL 383
H +A N+E ++++ NE F + Y + LC++GR+ E
Sbjct: 387 ------------GHCKA-GNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAY 433
Query: 384 EALEA 388
+ L++
Sbjct: 434 KVLKS 438
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 131/305 (42%), Gaps = 19/305 (6%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M++ GL P +++ ++ + A L+ S G +P T L R S+G
Sbjct: 233 EMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRG 292
Query: 154 LATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
++G ++++ M I IL+ L R+ +E+A + + GL+ YD
Sbjct: 293 KWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYD 352
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+IA C+ G A E M + G + ++N +++ G + A FE ++
Sbjct: 353 PLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLD-- 410
Query: 273 EDYMKPDTETYNCVIQA-YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
E P+ +YN + A ++ + Y ++ + +LL ++ + P+ TY L+ C
Sbjct: 411 EVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLL------NQGIDPDEITYNSLISCLC 464
Query: 332 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA- 390
+ V EAI +Q+ V+ ++ L LC+ R + +E L AM
Sbjct: 465 RDGMVDEAIELLVDMQSGRYRPNVVS--------YNIILLGLCKVNRANDAIEVLAAMTE 516
Query: 391 KDNQP 395
K QP
Sbjct: 517 KGCQP 521
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 20/245 (8%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALAR 147
+I +MI+ G P + L+ +G E A++ L+ G++P ++ LIA
Sbjct: 300 LISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFC 359
Query: 148 LFGSKGLATKGLEILAA----MEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
G LAT+ LE + + + +NY+ A L R + A +VF + + G
Sbjct: 360 REGRLDLATEFLEYMISDGCLPDIVNYNTIMAGL------CRTGKADQALEVFEKLDEVG 413
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
Y+ + + +GD ALE+ ++ G +N L+SC G+ + A
Sbjct: 414 CPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAI 473
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+M+ G +P+ +YN ++ + +R D E+L M E K QPN TY
Sbjct: 474 ELLVDMQSGR--YRPNVVSYNIILLGLCKV---NRANDAIEVLAAMTE--KGCQPNETTY 526
Query: 324 ALLVE 328
LL+E
Sbjct: 527 ILLIE 531
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 109/277 (39%), Gaps = 45/277 (16%)
Query: 148 LFGSK--GLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
F S+ G AT+ +EIL K + A+ L+ ++ LE+AN+V R G
Sbjct: 114 FFNSRNIGKATRVMEILERYGKPDV---FAYNALISGFIKANQLENANRVLDRMKSRGFL 170
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y++MI C G ALEI E+ T + L+ G +VA
Sbjct: 171 PDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKL 230
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL------------------- 306
+ M ++PDT TYN +I+ + D+ ++ L
Sbjct: 231 LDEML--SKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTL 288
Query: 307 ---GMMVEDHKRL--------QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
G E K + +PNV T+++L+ + V EA+ R+++ K
Sbjct: 289 LSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKE-----KG 343
Query: 356 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392
L + DPL + CREGR+ E LE M D
Sbjct: 344 LKPDAYCYDPL---IAGFCREGRLDLATEFLEYMISD 377
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 139/342 (40%), Gaps = 69/342 (20%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LH 139
+DA R+ + D G P ++ L++ +GD + A+ + L G++P L+
Sbjct: 310 QDASRI---LKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLY 366
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
TLI KGL+ +GL +L A++ +N D+
Sbjct: 367 NTLI--------KGLSQQGL-VLKALQLMN-DM--------------------------- 389
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
+K G+ Y+L+I CK G S+A + A G + F FN L+
Sbjct: 390 SKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKM 449
Query: 260 EVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ A ++M +G + PD TYN ++ +A + +DV E M++E K P
Sbjct: 450 DNAIGILDSMWSHG---VTPDVITYNSILNGLCKAA---KPEDVMETFKMIME--KGCLP 501
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCRE 376
N+ TY +L+E K VTEA+ ++ N G DP+S + C
Sbjct: 502 NIITYNILIESLCKARKVTEALDLLEEIR----------NRGLIPDPVSFGTVISGFCNN 551
Query: 377 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL 418
G + E + M + + A Y +++++ E L
Sbjct: 552 GDLDEAYQLFRRMEQQYRICHTVA-----TYNIMINAFSEKL 588
>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
Length = 595
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 4/211 (1%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M + G P ++ LV A+ G E A + AG P AL +
Sbjct: 302 VFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 361
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
GL EI + M+ + + R ++ ILV+ R EDA VF + G+ T +
Sbjct: 362 RAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMK 421
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ L++A ++G+ + E+ ++ +G TF N +L+ A G + F M
Sbjct: 422 SHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAM 481
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
E D D TYN + AY RA R++
Sbjct: 482 ERRGD---ADVGTYNVAVNAYGRAGYVGRME 509
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 106/238 (44%), Gaps = 21/238 (8%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRE-------LSAGVRPLHETLIALARLFGSKGLATKG 158
SF ++ Y L + G L + L A P +T L R + + G +
Sbjct: 170 SFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRA 229
Query: 159 LEILAAMEKI----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+++ M + N + A+L + L++ + E A +V+ R + RA E + LM
Sbjct: 230 EGVISEMREHGIPPNATVYNAYL---DGLLKARCTEKAVEVYQRMKRERCRANTETFTLM 286
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I KA +++++ EM++ G + L++ A G+ E A FE M+
Sbjct: 287 INVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH 346
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+PD YN +++AY+RA Q +E+ +M H +P+ +Y +LV+ + +
Sbjct: 347 --EPDVYAYNALMEAYSRA---GLPQGASEIFSLM--QHMGCEPDRASYNILVDAYGR 397
Score = 46.6 bits (109), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 19/198 (9%)
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
KVF G + Y ++ + G A E+ EM+ AG + +N L+
Sbjct: 301 KVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAY 360
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
+ G+P+ A F M++ +PD +YN ++ AY RA ++ + V E L
Sbjct: 361 SRAGLPQGASEIFSLMQHMG--CEPDRASYNILVDAYGRAGLHEDAEAVFEEL-----KQ 413
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLR 371
+ + P +K++ LL+ + T E LH G D +L L
Sbjct: 414 RGMSPTMKSHMLLLAAHARSGNATRC----------EEVMAQLHKSGLTPDTFALNAMLN 463
Query: 372 ALCREGRIIELLEALEAM 389
A R GR+ ++ AM
Sbjct: 464 AYARAGRLDDMERLFAAM 481
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 117/274 (42%), Gaps = 45/274 (16%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG--------DHEGAMHSLKRELSAGV 135
DA RV D +M+ G P +++ L LNG D EG ++ ++ GV
Sbjct: 288 DALRVRD---EMVGCGCLPDVVTYNTL-----LNGLCKERRLLDAEGLLNEMRER---GV 336
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDAN 193
P T L + +G K L++ M +++ DI + L++ + R L+ AN
Sbjct: 337 PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDI-VTYNTLIDGMCRQGDLDKAN 395
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
++ + Y ++I C+ G +A EM G + +N ++
Sbjct: 396 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 455
Query: 254 ATCGIPEVAFATFENMEYGEDYMK--------PDTETYNCVIQAYTRAESYDRVQDVAEL 305
G N+ G+ +++ PD TYN +I Y + D++ D +L
Sbjct: 456 CRSG----------NVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKE---DKMHDAFKL 502
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
L MM + +++QP+V TY +L+ F+ + V EA
Sbjct: 503 LNMM--EKEKVQPDVVTYNMLINGFSVHGNVQEA 534
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 76/364 (20%), Positives = 127/364 (34%), Gaps = 94/364 (25%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V +M G++P RSF L+ + G+ E A+ K G++P + L LF
Sbjct: 186 EVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLF 245
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+G + L M GL
Sbjct: 246 ARRGKMDHAMAYLREMRCF----------------------------------GLVPDGV 271
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC------------- 256
IY ++I C+AG S+AL + EM G + +N LL+ C
Sbjct: 272 IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLN--GLCKERRLLDAEGLLN 329
Query: 257 -----GIPEVAFATFENMEYG------------------EDYMKPDTETYNCVIQAYTRA 293
G+P TF + +G ++PD TYN +I R
Sbjct: 330 EMRERGVPP-DLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQ 388
Query: 294 ESYDRVQDVAELLGMMVEDHKR-LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
D+ D+ + + H R + PN TY++L++ + V +A + N
Sbjct: 389 GDLDKANDLWD------DMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMIN---- 438
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS 412
+L N + + Y CR G + + + L+ M + V P + Y TL+
Sbjct: 439 KGILPNIMTYNSIIKGY----CRSGNVSKGQKFLQKMMVNK--VSPDLI----TYNTLIH 488
Query: 413 SWIE 416
+I+
Sbjct: 489 GYIK 492
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
++M+ CKA + + EME N ++ + G E A A ++M
Sbjct: 99 NIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMV- 157
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+KP TYN V++ R+ +D+ +V + + D + P+V+++ +L+ F
Sbjct: 158 -SKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM-----DDFGVAPDVRSFTILIGGFC 211
Query: 332 KYCAVTEAIRHFRALQN 348
+ + EA++ ++ +++
Sbjct: 212 RVGEIEEALKIYKEMRH 228
>gi|125542873|gb|EAY89012.1| hypothetical protein OsI_10494 [Oryza sativa Indica Group]
Length = 563
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 92/214 (42%), Gaps = 17/214 (7%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D +M +G+ P ++ + T G E A+ + +R LSAG++P ++
Sbjct: 313 DAYQEMFKSGIDPSEDILKAIIASCTKEGKWEFALTTFRRMLSAGMKPSIIVFNSIINSL 372
Query: 150 GSKG---LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
G G LA + +L + + D + W L+ L R+ D +F +G K A
Sbjct: 373 GKAGEDELAFRMYHLLTS-SGLKPD-QYTWSALLSALYRSGRCWDVLDLF-QGIKTKHSA 429
Query: 207 --TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ +Y++ + + G + L++ + ME G + +NH++ +P+VA
Sbjct: 430 LLNNHLYNIALMSCERLGQWEHGLQLLWMMERGGLQISAVSYNHVIGACEVARMPKVALK 489
Query: 265 TFENMEYGEDY---------MKPDTETYNCVIQA 289
+ + YG+ + + PD+ YN VI
Sbjct: 490 VYRQLAYGDLFGMNEDILEEVAPDSSVYNTVIHG 523
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 114/308 (37%), Gaps = 50/308 (16%)
Query: 67 GLRLIFMEE---------LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLN 117
G RL F+EE L++ +++ ++ M A+GL P + + L+ +
Sbjct: 141 GSRLHFLEERDEEMLSRRLIKLSQSNKVRSATELFDSMRASGLQPSAHACNSLLACFVRR 200
Query: 118 GDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL--ATKGLEILAAMEKINYDI--- 172
G AM + G+ H + L + ++G A K + + +K N D+
Sbjct: 201 GSFADAMKVFEFMKGKGMATGHSYTLILKAVATTEGYFAALKMFDEIEESDKKNVDVIVY 260
Query: 173 -------------RQA---WL---------------ILVEELVRNKYLEDANKVFLRGAK 201
RQ W +LV V+ E A + K
Sbjct: 261 NTVISVCGRAKDWRQVERLWRRLGDNSLSGTLMTYDLLVSTFVQCGQSELAVDAYQEMFK 320
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G+ +++I +IA K G AL M +AG + FN +++ G E+
Sbjct: 321 SGIDPSEDILKAIIASCTKEGKWEFALTTFRRMLSAGMKPSIIVFNSIINSLGKAGEDEL 380
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
AF + + +KPD T++ ++ A R+ R DV +L + H L N
Sbjct: 381 AFRMYHLLT--SSGLKPDQYTWSALLSALYRS---GRCWDVLDLFQGIKTKHSALLNNHL 435
Query: 322 TYALLVEC 329
L+ C
Sbjct: 436 YNIALMSC 443
>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
Length = 946
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 109/267 (40%), Gaps = 20/267 (7%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IAL 145
R V+ M+ G P P+ F+ LV AY +GDH A LK+ + G P + I +
Sbjct: 314 RCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 373
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLIL----VEELVR-----NKYLEDANKVF 196
+ G K + ++L EK ++ A ++L V R KY E A V
Sbjct: 374 GSICGDKD--SLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY-EKAFSVI 430
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
G Y ++ C A A + EM+ G +A + + ++
Sbjct: 431 REMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKA 490
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G+ E A F M E P+ TY +I AY +A+ +V EL M+ +
Sbjct: 491 GLIEQARKWFNEMR--EVGCTPNVVTYTALIHAYLKAK---KVSYANELFETMLSEG--C 543
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHF 343
PN+ TY+ L++ K V +A + F
Sbjct: 544 LPNIVTYSALIDGHCKAGQVEKACQIF 570
Score = 40.4 bits (93), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 95/254 (37%), Gaps = 24/254 (9%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M G +P ++ L+ AY A + LS G P T AL G
Sbjct: 502 EMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAG 561
Query: 154 LATKGLEILAAM------EKINYDIRQ-----------AWLILVEELVRNKYLEDANKVF 196
K +I M ++ +Q + L++ ++ +E+A K+
Sbjct: 562 QVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLL 621
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ G +YD +I CK G A E+ EM G AT + ++ L+
Sbjct: 622 DAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKV 681
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
++A M E+ P+ Y +I + D + +L+ MM E K
Sbjct: 682 KRQDLASKVLSKML--ENSCAPNVVIYTEMIDGLCKVGKTD---EAYKLMQMMEE--KGC 734
Query: 317 QPNVKTYALLVECF 330
QPNV TY +++ F
Sbjct: 735 QPNVVTYTAMIDGF 748
>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Glycine max]
Length = 777
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 14/243 (5%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL P +F+ ++ + G+ + A ++R + GV P ET +L +G KG +
Sbjct: 390 GLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRC 449
Query: 159 LEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E L M+K ++ L+ L +++ L DA V G+ EIY+++I
Sbjct: 450 FEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEA 509
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
C +A EM +G AT +N L++ G + A F ++
Sbjct: 510 SCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLF--LQMAGKGCN 567
Query: 278 PDTETYNCVIQAYTRAESYDR---VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
PD TYN +I Y ++ + + + D ++LG ++P V T+ L+ K
Sbjct: 568 PDVITYNSLISGYAKSVNTQKCLELYDKMKILG--------IKPTVGTFHPLIYACRKEG 619
Query: 335 AVT 337
VT
Sbjct: 620 VVT 622
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 7/159 (4%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + IL+ L R +E A +V + + G+ + Y++++ C+ GD A+ +
Sbjct: 326 RTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQ 385
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
ME G FN ++S C EV A E + P ETYN +I Y +
Sbjct: 386 MEERGLEPNRITFNTVIS--KFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQK 443
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ R E L M D ++PNV +Y L+ C K
Sbjct: 444 GHFVR---CFEFLDEM--DKAGIKPNVISYGSLINCLCK 477
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 130/349 (37%), Gaps = 71/349 (20%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
L + ++ ++R D + +MI GL P ++ L+ Y +G+ + A K
Sbjct: 517 LCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKE 576
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNK 187
L G+ P AL + +G T+ I M ++ D+R + L+ L+RN
Sbjct: 577 MLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVR-TYSALIHGLLRNG 635
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
L+ A ++ + GL Y+ +I+ CK G A ++
Sbjct: 636 KLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQL----------------- 678
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
H CQ GI P+ TYN +I +A +R +++ + +
Sbjct: 679 HEYMCQK--GIS------------------PNIITYNALINGLCKAGEIERARELFDGI- 717
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ---------NYEGGTKVLHN 358
K L N TYA +++ + K +++A R F + Y
Sbjct: 718 ----PGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRK 773
Query: 359 EGNFGDPLSLYLRA-----------------LCREGRIIELLEALEAMA 390
EGN LSL+L + C+ G++IE + LE M
Sbjct: 774 EGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMV 822
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 121/288 (42%), Gaps = 35/288 (12%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ M+ + +A RV + +M+A G+ +++ LV GD E A L +
Sbjct: 347 LIDGFMRQGDSGEAFRVKE---EMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMI 403
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYL 189
G++P +T + + + ++ ++L+ M+K N + A+ +++ L R+ +
Sbjct: 404 MVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNL-VPTAYTCGMIINGLCRHGSI 462
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
EDA++VF G++ IY +I + G A+ I M+ G +N +
Sbjct: 463 EDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSV 522
Query: 250 LSCQATCGIPEVAFATFENMEYGEDY--------MKPDTETYNCVIQAYTRA---ESYDR 298
+ + ME +DY +KP+ TY +I Y ++ + DR
Sbjct: 523 I----------IGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADR 572
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
E+LG + PN L++ + K + TEA FR +
Sbjct: 573 Y--FKEMLGCGI------APNDVVCTALIDGYCKEGSTTEATSIFRCM 612
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 110/261 (42%), Gaps = 27/261 (10%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ IL++ + K +A + GL+ Y +I + GD A + EM
Sbjct: 309 YSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEML 368
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
A G F +N L+ G E A A M +KPDT+TYN +I+ Y + ++
Sbjct: 369 ARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVG--IKPDTQTYNNMIEGYLKEQN 426
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK- 354
RV+D LL M + + L P T +++ ++ ++ +A R F + + G K
Sbjct: 427 TSRVKD---LLSEMKKSN--LVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSL--GVKP 479
Query: 355 --VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS 412
V++ + ++ +EGR E + L+ M D + V P + Y +++
Sbjct: 480 NAVIY---------TTLIKGHVQEGRFQEAVRILKVM--DKKGVQPDVLC----YNSVII 524
Query: 413 SWIEPLQEEAELGYEIDYIAR 433
+ + E Y ++ I R
Sbjct: 525 GLCKSRKMEEAKDYLVEMIER 545
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 10/265 (3%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ + ++ RV D++ +M + L P + ++ +G E A + +S GV+P
Sbjct: 421 YLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPN 480
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVF 196
L + +G + + IL M+K + D+ + ++ L +++ +E+A
Sbjct: 481 AVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVL-CYNSVIIGLCKSRKMEEAKDYL 539
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ + GL+ Y +I CK+G+ A EM G L+
Sbjct: 540 VEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKE 599
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G A + F M G + PD TY+ +I R ++Q ELL +E K L
Sbjct: 600 GSTTEATSIFRCM-LGRS-VHPDVRTYSALIHGLLRN---GKLQGAMELLSEFLE--KGL 652
Query: 317 QPNVKTYALLVECFTKYCAVTEAIR 341
P+V TY ++ F K + +A +
Sbjct: 653 VPDVFTYNSIISGFCKQGGIGKAFQ 677
>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 10/239 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ GL+P P + L++ ++NG + A + + + G+ + L F +G
Sbjct: 292 MVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGD 351
Query: 155 ATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ ME+ I D+ A+ ++ L + +E+A VFL + GL + Y+
Sbjct: 352 VVGAQSLWGEMERRGIFPDV-VAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYN 410
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I CK G + AL++ M G + F N ++ G A F +M
Sbjct: 411 SLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMH-- 468
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ + PD TYN +I Y +A +D V + L+ M P++ TY + + F
Sbjct: 469 QTGLSPDIITYNTLINGYCKA--FDMV-NADNLVNRMYASGS--NPDLTTYNIRIHGFC 522
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
ED +++ + GL ++D+ ++ C AG A+E +M G + FN +
Sbjct: 213 EDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSV 272
Query: 250 LSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
++ + G+ + AF ++ M +G + P T + ++ + R+Q+ EL+G
Sbjct: 273 IAAYSQAGLEDKAFEAYKLMVHFG---LTPSPSTCSSLLMGLSIN---GRLQEATELIGQ 326
Query: 309 MVEDHKRLQPNVKTYALLVECFTK 332
M+E K L N + +L++ F K
Sbjct: 327 MIE--KGLSVNNMAFTVLLDKFFK 348
>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like, partial [Cucumis sativus]
Length = 564
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 139/355 (39%), Gaps = 40/355 (11%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ + + + + + ++ +M G+ +H ++ YT+ GD + + +R
Sbjct: 19 IIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFER 78
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNK 187
G+ P T L L+ G +K LE+ ME I ++++ + +L+ ++ K
Sbjct: 79 FKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMK-TYSMLINGFLKLK 137
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+A +F K G++ +Y+ +I C G A+ EM+ TT F
Sbjct: 138 DWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFM 197
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT---RAESYDRVQDVAE 304
++ A G + A F+ M P TYN +I + E +++ D
Sbjct: 198 PIIHGFARKGEMKKALDVFDMMRMSG--CIPTVHTYNALILGLVEKRKMEKAEQILDEMT 255
Query: 305 LLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 364
L G + PN TY ++ + +A +F L++ G
Sbjct: 256 LAG--------VSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDE-------------GL 294
Query: 365 PLSLY-----LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
L +Y L+A C+ GR+ L + M+ N +P I Y L+ W
Sbjct: 295 QLDVYTYEALLKACCKSGRMQSALAVTKEMSAQN--IPRNTFI----YNILIDGW 343
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 5/209 (2%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R + ++ +M AG+SP ++ ++ Y GD A + G++ T
Sbjct: 242 RKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTY 301
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGA 200
AL + G L + M N R ++ IL++ R + +A + +
Sbjct: 302 EALLKACCKSGRMQSALAVTKEMSAQNIP-RNTFIYNILIDGWARRGDVWEAADLMQQMK 360
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ G++ Y I KAGD A + EM++ G + L++ A +PE
Sbjct: 361 REGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPE 420
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQA 289
A + FE M+ +KPD Y+C++ +
Sbjct: 421 KALSCFEEMKLSG--LKPDRAVYHCLMTS 447
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 112/301 (37%), Gaps = 43/301 (14%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
+D + D+I G+ P ++ ++ A+ G + A+ ++K +P T
Sbjct: 137 KDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTF 196
Query: 143 IALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKV------ 195
+ + F KG K L++ M + L+ LV + +E A ++
Sbjct: 197 MPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTL 256
Query: 196 -----------------------------FLRGAKGGLRATDEIYDLMIAEDCKAGDHSN 226
F + GL+ Y+ ++ CK+G +
Sbjct: 257 AGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQS 316
Query: 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286
AL + EM A TF +N L+ A G A + M+ + ++PD TY
Sbjct: 317 ALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMK--REGVQPDIHTYTSF 374
Query: 287 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
I A ++A R E + + ++PNVKTY L+ + + +A+ F +
Sbjct: 375 INACSKAGDMQRATKTIEEMKSV-----GVKPNVKTYTTLINGWARASLPEKALSCFEEM 429
Query: 347 Q 347
+
Sbjct: 430 K 430
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 91/435 (20%), Positives = 155/435 (35%), Gaps = 73/435 (16%)
Query: 25 PIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRL-------IFMEELM 77
PIR A+ +R + Q H + V+ + +R+ +F + L
Sbjct: 4 PIRYAIPKFSISSRFFGHFQPQNPHKNCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLG 63
Query: 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP 137
R P + + + G+SP +F L+ Y A L L +G +P
Sbjct: 64 AIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQP 123
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVF 196
T + F G+ K L+ + Y Q + L+ L +N ++ A +
Sbjct: 124 NLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLL 183
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
K ++ +Y +I CK G S+AL + ++ G + +N L+ +
Sbjct: 184 QEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSV 243
Query: 257 G----IPEVAFATFENMEYGEDYM-----------------------------KPDTETY 283
G + ++ +DY KPD TY
Sbjct: 244 GRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTY 303
Query: 284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
N +++ Y E+ V + EL MV+ + L+P+V Y +L++ + K V EA+ F
Sbjct: 304 NALMEGYCSREN---VHEARELFNRMVK--RGLEPDVLNYNVLIDGYCKTKMVDEAMVLF 358
Query: 344 RALQN---------YEGGTKVLHNEGNFGD------------------PLSLYLRALCRE 376
+ L N Y L N G ++ + ALC+E
Sbjct: 359 KELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKE 418
Query: 377 GRIIELLEALEAMAK 391
GRI+E L L M K
Sbjct: 419 GRILEALGVLVMMMK 433
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 128/315 (40%), Gaps = 30/315 (9%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V ++ M+ + P +F+ L+ A G A L G +P T AL
Sbjct: 249 VTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALME 308
Query: 148 LFGSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
+ S+ + E+ M K +NY++ L++ + K +++A +F
Sbjct: 309 GYCSRENVHEARELFNRMVKRGLEPDVLNYNV------LIDGYCKTKMVDEAMVLFKELC 362
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IP 259
L T Y+ +I C +G S+ ++ EM + + +N L+ G I
Sbjct: 363 NKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRIL 422
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
E M+ G +KP+ TYN ++ Y + + +D+ MV+ L+P+
Sbjct: 423 EALGVLVMMMKKG---VKPNIVTYNAMMDGYCLRNNVNVAKDI---FNRMVK--SGLEPD 474
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 379
+ Y +L+ + K V EAI F+ +++ ++ + ++ + LC GRI
Sbjct: 475 ILNYNVLINGYCKTEMVDEAIVLFKEMRH----KNLIPDIASYNS----LIDGLCNLGRI 526
Query: 380 IELLEALEAMAKDNQ 394
+ E L+ M Q
Sbjct: 527 PHVQELLDEMCDSGQ 541
>gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 28/223 (12%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
QA +L+ LV+ + + K+F + K G+ A +Y++++ K+GD A ++ E
Sbjct: 169 QACTVLLNSLVKERLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDSEKAEKLLSE 228
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
ME G F +N L+S + A + + ME + PD TYN +I ++R
Sbjct: 229 MEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRME--RSGVAPDIVTYNSLIHGFSRE 286
Query: 294 ESYDRVQDVAELL----GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
R+++ L G+++ +H TY L++ + + + EA+R R +
Sbjct: 287 ---GRMREATRLFRKIKGVVMANH-------VTYTTLIDGYCRMNDIDEALR-LREVMES 335
Query: 350 EGGTK--VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
G V +N LR LC +GRI E L M+
Sbjct: 336 RGFCPGVVTYNS---------ILRKLCEDGRIREANRLLTEMS 369
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 15/252 (5%)
Query: 87 RVNDVIYD----MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R+ D ++ M+ G+ ++ LV A + +GD E A L GV P T
Sbjct: 182 RLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIFTY 241
Query: 143 IALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
L ++ K + + L + ME+ + DI + L+ R + +A ++F R
Sbjct: 242 NTLISVYCKKSMHFEALSVQDRMERSGVAPDI-VTYNSLIHGFSREGRMREATRLF-RKI 299
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
KG + A Y +I C+ D AL + ME+ G +N +L + C
Sbjct: 300 KGVVMANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFCPGVVTYNSIL--RKLCEDGR 357
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
+ A E ++PD T N +I AY + E D V V ++ M+E +L ++
Sbjct: 358 IREANRLLTEMSVKKIEPDNITCNTLINAYCKIE--DMVSAV-KVKKKMIESGLKL--DM 412
Query: 321 KTYALLVECFTK 332
+Y L+ F K
Sbjct: 413 YSYKALIHGFCK 424
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 10/239 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ YD+++ SP P ++ L+ +G E A + + G RP + L F
Sbjct: 881 DLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGF 940
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G G E+ M E I D++ ++ LV L ++DA F + + GL
Sbjct: 941 GKTGDVNTACELFKRMVREGIRPDLK-SYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLD 999
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+LMI ++ AL + EM++ G F +N L+ G+ E A +E
Sbjct: 1000 SIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYE 1059
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+++ ++P+ TYN +I+ Y+ + + D V + MMV PN T+A L
Sbjct: 1060 ELQFIG--LEPNVFTYNALIRGYSMSGNSDSAYAVYK--RMMVGG---CSPNTGTFAQL 1111
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 10/255 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ GL P ++F L+VA D E L+ S G++P T R+ G G
Sbjct: 220 MVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGR 279
Query: 155 ATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ I+ ME D+ + +L++ L L+DA ++F++ + Y
Sbjct: 280 IDEACRIMKRMEDDGCGPDV-VTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYI 338
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
M+ + GD E EMEA G F L++ G + AF + M
Sbjct: 339 TMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMR-- 396
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ + P+ TYN +I R +R+ D +L M + + P TY L ++ + K
Sbjct: 397 KQGVLPNLHTYNTLISGLLRV---NRLDDALDLFNNM--ETLGVVPTAYTYILFIDFYGK 451
Query: 333 YCAVTEAIRHFRALQ 347
+A+ F ++
Sbjct: 452 SGRSDKALETFEKMK 466
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 36/220 (16%)
Query: 156 TKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANK-----VFL-------RGAKGG 203
TK L + +E N+ I + +E+ N + E N VF G G
Sbjct: 781 TKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGK 840
Query: 204 LRATDEIYDLMIAEDCKAGDHSN---------------ALEIAYEMEAAGRMATTFHFNH 248
+ E+Y+ MI CK ++ AL++ Y++ + T +
Sbjct: 841 INELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGP 900
Query: 249 LLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
LL G E A FE M +YG +P+ YN +I + + V EL
Sbjct: 901 LLDGLLKSGRLEEAKELFEEMVDYG---CRPNNAIYNILINGFGKTGD---VNTACELFK 954
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
MV + R P++K+Y LV C + V +A+ +F L+
Sbjct: 955 RMVREGIR--PDLKSYTSLVGCLCEAGRVDDALHYFEKLK 992
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 19/207 (9%)
Query: 127 LKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRN 186
R S G+ P T + + + G + +E+L+ M + + + +I++ L+
Sbjct: 497 FNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSE---NQCEPDIIVINSLINT 553
Query: 187 KY----LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT 242
Y +++A K+F R L T Y+ +IA K G A+E+ M G
Sbjct: 554 LYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPN 613
Query: 243 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK--PDTETYNCVIQAYTRAESYDRVQ 300
T FN +L C C EV A M Y M PD T+N +I + RV
Sbjct: 614 TITFNTILDC--LCKNDEVDLAL--KMLYKMTTMNCMPDVLTFNTIIHGLVIEK---RVS 666
Query: 301 DVAELLGMMVEDHKRLQPNVKTYALLV 327
D L M K L P+ T L+
Sbjct: 667 DAIWLFHQM---KKMLTPDCVTLCTLL 690
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 16/239 (6%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P +++ L+ + A+ + GV P T I +G G + K
Sbjct: 399 GVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKA 458
Query: 159 LEILAAMEKI-----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
LE M KI N A L + E+ R L +A +F R GL Y++
Sbjct: 459 LETFEKM-KIRGIAPNIVACNASLYSLAEMGR---LREAKVIFNRLKSNGLAPDSVTYNM 514
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
M+ KAG A+E+ +M N L++ G + A+ F ++ +
Sbjct: 515 MMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLK--D 572
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ P TYN +I + +VQ EL M + PN T+ +++C K
Sbjct: 573 MKLAPTVVTYNTLIAGLGKE---GQVQRAMELFASMTGNG--CPPNTITFNTILDCLCK 626
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ L+++ LE+A ++F G R + IY+++I K GD + A E+ M G
Sbjct: 901 LLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREG 960
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ L+ C G + A FE ++ Y+ D+ YN +I R+ R
Sbjct: 961 IRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYL--DSIAYNLMIDGLGRSH---R 1015
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLV 327
+++ L M + + P++ TY L+
Sbjct: 1016 IEEALTLYDEM--QSRGINPDLFTYNSLI 1042
>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 997
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 109/267 (40%), Gaps = 20/267 (7%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IAL 145
R V+ M+ G P P+ F+ LV AY +GDH A LK+ + G P + I +
Sbjct: 355 RCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 414
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLIL----VEELVR-----NKYLEDANKVF 196
+ G K + ++L EK ++ A ++L V R KY E A V
Sbjct: 415 GSICGDKD--SLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY-EKAFSVI 471
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
G Y ++ C A A + EM+ G +A + + ++
Sbjct: 472 REMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKA 531
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G+ E A F M E P+ TY +I AY +A+ +V EL M+ +
Sbjct: 532 GLIEQARKWFNEMR--EVGCTPNVVTYTALIHAYLKAK---KVSYANELFETMLSEG--C 584
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHF 343
PN+ TY+ L++ K V +A + F
Sbjct: 585 LPNIVTYSALIDGHCKAGQVEKACQIF 611
Score = 40.4 bits (93), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 95/254 (37%), Gaps = 24/254 (9%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M G +P ++ L+ AY A + LS G P T AL G
Sbjct: 543 EMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAG 602
Query: 154 LATKGLEILAAM------EKINYDIRQ-----------AWLILVEELVRNKYLEDANKVF 196
K +I M ++ +Q + L++ ++ +E+A K+
Sbjct: 603 QVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLL 662
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ G +YD +I CK G A E+ EM G AT + ++ L+
Sbjct: 663 DAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKV 722
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
++A M E+ P+ Y +I + D + +L+ MM E K
Sbjct: 723 KRQDLASKVLSKML--ENSCAPNVVIYTEMIDGLCKVGKTD---EAYKLMQMMEE--KGC 775
Query: 317 QPNVKTYALLVECF 330
QPNV TY +++ F
Sbjct: 776 QPNVVTYTAMIDGF 789
>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Vitis vinifera]
Length = 587
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 119/282 (42%), Gaps = 13/282 (4%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V ++M + P +F LV A+ G E A ++ AG+ P AL +
Sbjct: 295 VFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYS 354
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G EI + M+ + + R ++ I+V+ R EDA VF + G+ T +
Sbjct: 355 RAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMK 414
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ L+++ +AG + EI +M +G TF N +L+ G E M
Sbjct: 415 SHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAM 474
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
E G D TYN +I Y RA + R++++ L + L P+V T+ +
Sbjct: 475 EKGP--YPADISTYNILINIYGRAGFFARMEELFRSL-----PARNLIPDVVTWTSRIGA 527
Query: 330 FTKYCAVTEAIRHFRALQNY----EGGT-KVLHNEGNFGDPL 366
+++ + F + + +GGT KVL + + GD +
Sbjct: 528 YSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQI 569
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 5/214 (2%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M G P ++ + GD + A+ +R +P T L L+G
Sbjct: 225 VFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYG 284
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+ L++ M +K +I + LV R E A ++F + + GL
Sbjct: 285 KASKSYMALKVFHEMRSQKCKPNI-CTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDV 343
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y+ ++ +AG A EI M+ G +N ++ G+ E A A FE
Sbjct: 344 YAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEV 403
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
M+ + P +++ ++ AY+RA + +++
Sbjct: 404 MK--RLGITPTMKSHMLLLSAYSRAGKVAKCEEI 435
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ +L++ + LE A VF K G + +Y+ I K GD A+EI M+
Sbjct: 206 YALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMK 265
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+T + L++ +A F M KP+ T+ ++ A+ R
Sbjct: 266 RDRCQPSTATYTMLINLYGKASKSYMALKVFHEMR--SQKCKPNICTFTALVNAFAREGL 323
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
++ +++ E L L+P+V Y L+E +++
Sbjct: 324 CEKAEEIFEQL-----QEAGLEPDVYAYNALMEAYSR 355
>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 886
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 112/270 (41%), Gaps = 11/270 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R + +N ++ +M+ G P +++ L+ +Y AM+ + AG +P
Sbjct: 375 GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDR 434
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T L + G +++ M+ + +++ L + +L A+K+F
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCE 494
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G Y++M+ KA ++ NAL++ +M+ AG ++ ++ CG
Sbjct: 495 MVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY 554
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E A A F M+ + PD Y ++ + +A + ++ + + H L+P
Sbjct: 555 LEEAEAVFTEMQ--QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAM-----LHAGLRP 607
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQN 348
NV T L+ F + + EA + LQN
Sbjct: 608 NVPTCNSLLSTFLRVNKIAEA---YELLQN 634
>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
Length = 977
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 112/270 (41%), Gaps = 11/270 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R + +N ++ +M+ G P +++ L+ +Y AM+ + AG +P
Sbjct: 492 GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDR 551
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T L + G +++ M+ + +++ L + +L A+K+F
Sbjct: 552 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCE 611
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G Y++M+ KA ++ NAL++ +M+ AG ++ ++ CG
Sbjct: 612 MVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY 671
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E A A F M+ + PD Y ++ + +A + ++ + + H L+P
Sbjct: 672 LEEAEAVFTEMQ--QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAM-----LHAGLRP 724
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQN 348
NV T L+ F + + EA + LQN
Sbjct: 725 NVPTCNSLLSTFLRVNKIAEA---YELLQN 751
>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 8/224 (3%)
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
++V + GD AM L ++G+ P TLIA+ G G + I M+
Sbjct: 262 IIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNG 321
Query: 170 YDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228
+ +A+ L++ V+ L+DA + + G+ + Y L+I AG +A
Sbjct: 322 LKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESAR 381
Query: 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288
+ EMEA M ++ F+ +L+ G + +F + M+ ++PD YN +I
Sbjct: 382 IVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMK--NSGVRPDRHFYNVMID 439
Query: 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ + D D + M+ E +QP+ T+ L++C K
Sbjct: 440 TFGKFSCLDHAMDTFD--KMLSEG---IQPDTVTWNTLIDCHCK 478
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 107/248 (43%), Gaps = 18/248 (7%)
Query: 99 GLSPGPRSFHGLVVAYTLNG---DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
GL P R+++GL+ Y G D E + ++R +GV P T L + + G
Sbjct: 321 GLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMER---SGVSPDECTYSLLIDAYSNAGRW 377
Query: 156 TKGLEILAAMEKINYDIRQAWL---ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+L ME N + +++ IL R ++ + + +V G+R Y+
Sbjct: 378 ESARIVLKEMEANNI-MPNSYVFSRILASYRDRGEW-QKSFQVLKEMKNSGVRPDRHFYN 435
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+MI K +A++ +M + G T +N L+ C + E A FE M
Sbjct: 436 VMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMM-- 493
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
E P T+N +I ++ E +D DV L+G M L PNV TY L++ + K
Sbjct: 494 EKGFSPCVTTFNIMINSFGEQERWD---DVKTLMGNM--RSLGLLPNVVTYTTLIDIYGK 548
Query: 333 YCAVTEAI 340
++AI
Sbjct: 549 SGRFSDAI 556
Score = 47.0 bits (110), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 8/243 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M +G+ P ++ ++ + + AM + + LS G++P T L
Sbjct: 418 VLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHC 477
Query: 151 SKGLATKGLEILA-AMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
L + E+ MEK + I++ + +D + GL
Sbjct: 478 KAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVV 537
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y +I K+G S+A+E +M++AG ++ +N L++ A G+ E A F M
Sbjct: 538 TYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLM 597
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
D +KP N +I A+ R + +L M E+ L+P+V TY L++
Sbjct: 598 R--ADSLKPSLLALNSLINAFGEDR---RDAEAFSVLKYMKEND--LKPDVVTYTTLMKA 650
Query: 330 FTK 332
+
Sbjct: 651 LIR 653
>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 112/270 (41%), Gaps = 11/270 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R + +N ++ +M+ G P +++ L+ +Y AM+ + AG +P
Sbjct: 375 GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDR 434
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T L + G +++ M+ + +++ L + +L A+K+F
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCE 494
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G Y++M+ KA ++ NAL++ +M+ AG ++ ++ CG
Sbjct: 495 MVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY 554
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E A A F M+ + PD Y ++ + +A + ++ + + H L+P
Sbjct: 555 LEEAEAVFTEMQ--QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAM-----LHAGLRP 607
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQN 348
NV T L+ F + + EA + LQN
Sbjct: 608 NVPTCNSLLSTFLRVNKIAEA---YELLQN 634
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 129/329 (39%), Gaps = 51/329 (15%)
Query: 60 VVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGD 119
V+ A +G+RL +R AP ++ AGL P + F+ L+ G+
Sbjct: 196 VLLALRRGIRLEPTSCTGLMSRFPTAPEACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGE 255
Query: 120 HEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI- 178
A + S GVR T+++ + G+ G L E ++ + +A +
Sbjct: 256 LASAQNVFDEMQSRGVR---RTVVSFNTMI--SGMCRAG--DLDGAETLHRRMSEAGVTP 308
Query: 179 -------LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIA 231
L++ L R +EDA VF + G++ ++ ++I CK GD LE+
Sbjct: 309 DVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELH 368
Query: 232 YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 291
EM G +N +++ C ++ A+ +E ++PDT TY +I Y
Sbjct: 369 REMRERGVRPDAVTYNAIVN--GLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYC 426
Query: 292 RAESYD--------------------------------RVQDVAELLGMMVEDHKRLQPN 319
+ E D R D +LG M+E L+P+
Sbjct: 427 KEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMME--AGLEPD 484
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRALQN 348
TY ++++ F + V +R + +QN
Sbjct: 485 NTTYTMVIDAFCRKGDVKTGLRLLKEMQN 513
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 105/260 (40%), Gaps = 13/260 (5%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
++F + H + DA + ++ +M G+ P +++ +V D + A +
Sbjct: 346 VVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVE 405
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNK 187
SAG+RP T L + + +EI M E + D + L+ L +
Sbjct: 406 MRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLD-EVTYTALISGLSKAG 464
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
DA +V + GL + Y ++I C+ GD L + EM+ GR +N
Sbjct: 465 RSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYN 524
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
+++ C + ++ A + PD TYN ++ + + + +V D+ EL
Sbjct: 525 VIMN--GFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCK---HGKVTDIEEL-- 577
Query: 308 MMVEDHKRLQPNVKTYALLV 327
+ K P++ Y +V
Sbjct: 578 ---KSAKGTVPDLGVYTSIV 594
>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 20/219 (9%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
QA +L+ LV+ + + K+F + K G+ A +Y++++ K+GD A ++ E
Sbjct: 169 QACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSE 228
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
ME G F +N L+S + A + + ME + P+ TYN I ++R
Sbjct: 229 MEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRME--RSGVAPNIVTYNSFIHGFSRE 286
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
R+++ L + +D + N TY L++ + + + EA+R R + G +
Sbjct: 287 ---GRMREATRLFREIKDD---VTANHVTYTTLIDGYCRMNDIDEALR-LREVMESRGFS 339
Query: 354 K--VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
V +N LR LC +GRI E L M+
Sbjct: 340 PGVVTYNS---------ILRKLCEDGRIREANRLLTEMS 369
Score = 40.0 bits (92), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 102/260 (39%), Gaps = 21/260 (8%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ R V + M+ G+ ++ LV A + +GD E A L GV P
Sbjct: 179 VKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDI 238
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDA 192
T L ++ K + + L + ME+ + Y+ + R + +A
Sbjct: 239 FTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNS------FIHGFSREGRMREA 292
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
++F R K + A Y +I C+ D AL + ME+ G +N +L
Sbjct: 293 TRLF-REIKDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSIL-- 349
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
+ C + A E ++PD T N +I AY + E D V V ++ M+E
Sbjct: 350 RKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIE--DMVSAV-KVKKKMIES 406
Query: 313 HKRLQPNVKTYALLVECFTK 332
L+ ++ +Y L+ F K
Sbjct: 407 G--LKLDMYSYKALIHGFCK 424
>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
Length = 625
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 119/282 (42%), Gaps = 13/282 (4%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V ++M + P +F LV A+ G E A ++ AG+ P AL +
Sbjct: 333 VFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYS 392
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G EI + M+ + + R ++ I+V+ R EDA VF + G+ T +
Sbjct: 393 RAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMK 452
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ L+++ +AG + EI +M +G TF N +L+ G E M
Sbjct: 453 SHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAM 512
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
E G D TYN +I Y RA + R++++ L + L P+V T+ +
Sbjct: 513 EKGP--YPADISTYNILINIYGRAGFFARMEELFRSL-----PARNLIPDVVTWTSRIGA 565
Query: 330 FTKYCAVTEAIRHFRALQNY----EGGT-KVLHNEGNFGDPL 366
+++ + F + + +GGT KVL + + GD +
Sbjct: 566 YSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQI 607
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 5/216 (2%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M G P ++ + GD + A+ +R +P T L L+G
Sbjct: 263 VFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYG 322
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+ L++ M +K +I + LV R E A ++F + + GL
Sbjct: 323 KASKSYMALKVFHEMRSQKCKPNI-CTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDV 381
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y+ ++ +AG A EI M+ G +N ++ G+ E A A FE
Sbjct: 382 YAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEV 441
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
M+ + P +++ ++ AY+RA + +++
Sbjct: 442 MK--RLGITPTMKSHMLLLSAYSRAGKVAKCEEIVN 475
Score = 42.7 bits (99), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ +L++ + LE A VF K G + +Y+ I K GD A+EI M+
Sbjct: 244 YALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMK 303
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+T + L++ +A F M KP+ T+ ++ A+ R
Sbjct: 304 RDRCQPSTATYTMLINLYGKASKSYMALKVFHEMR--SQKCKPNICTFTALVNAFAREGL 361
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
++ +++ E L L+P+V Y L+E +++
Sbjct: 362 CEKAEEIFEQL-----QEAGLEPDVYAYNALMEAYSR 393
>gi|224058965|ref|XP_002299667.1| predicted protein [Populus trichocarpa]
gi|222846925|gb|EEE84472.1| predicted protein [Populus trichocarpa]
Length = 562
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 3/218 (1%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
A N M G SP + L+ AY+ +G+++ A ++ S+G+ P
Sbjct: 155 ASNNRCEEAQSYFNQMKDEGHSPNIFHYSSLLNAYSSDGNYKKAEELVQDMKSSGLVPNK 214
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLR 198
L L +++ GL K ++L ++ + + + + +L++ L +N L++A VF
Sbjct: 215 VILTTLLKVYVRGGLFEKSRDLLVELDTLGFAKNEMPYCLLMDGLAKNGLLDEARSVFNE 274
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+ +++ Y +MI+ C+ G A E+A E EA N +L G
Sbjct: 275 MKEKRVKSGGYSYSIMISSFCRGGLFEEAKELAEEFEAKYDKYDVVILNTILCAYCRTGE 334
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
E T M+ E + PD T++ +I+ + + + Y
Sbjct: 335 KESVMRTMRKMD--ELAISPDYNTFHILIKYFCKEKLY 370
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 86/373 (23%), Positives = 134/373 (35%), Gaps = 70/373 (18%)
Query: 84 DAPRVN---DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
D+ RVN D+I +MI G+ P + G ++A G +E A + G P
Sbjct: 467 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 526
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRG 199
T AL GL + + M + + + L+ LV N+ ++ A V
Sbjct: 527 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 586
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL--------- 250
+ GL Y+ MI C GD A+ + M G A +N ++
Sbjct: 587 GRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNT 646
Query: 251 -------------SCQA--------TCGIPEV-----AFATFENMEYGEDYMKPDTETYN 284
C+ CG ++ AF F M +D + P+ TY
Sbjct: 647 TSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV--DDGLCPNEVTYT 704
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTKYCAVTEAIRH 342
+I Y + E D ++E KR +PNV+TY +L+ TK
Sbjct: 705 ALIDGYCKDEKLDTATS-------LLEHMKRSGCRPNVQTYNVLIHGLTKQ--------- 748
Query: 343 FRALQNYEGG---TKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDNQPVP 397
N+ G KV+ EG F + ++ + LC+ G LE M + Q
Sbjct: 749 ----NNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIE--QGCL 802
Query: 398 PRAMILSRKYRTL 410
P + S R L
Sbjct: 803 PNLLTYSSLIRAL 815
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 108/295 (36%), Gaps = 24/295 (8%)
Query: 35 KKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYD 94
KK Q+ H +L++ N + + G A R+ D++ D
Sbjct: 612 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSG-------------NTTSALRILDLMRD 658
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
G P S+ L+ + E A + G+ P T AL +
Sbjct: 659 ---GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 715
Query: 155 ATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+L M++ Q + +L+ L + A ++ + G+ Y
Sbjct: 716 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 775
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
MI CK G S ALE+ +M G + ++ L+ G E A F +E
Sbjct: 776 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE--R 833
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+ PD TY +I+AY + +V+ LG M++ QP + TY +L++
Sbjct: 834 HGLIPDEITYVKMIEAYIMS---GKVEHAFNFLGRMIK--AGCQPTLWTYGVLIK 883
>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
Length = 720
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 8/239 (3%)
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
+++ + GD A++ L ++G+ P T +A+ G+ G + I M++
Sbjct: 287 IILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGG 346
Query: 170 YDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228
R +A+ L++ R L++A + K GL + Y L++ G +A
Sbjct: 347 LKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESAR 406
Query: 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288
+ +MEA TF F+ +L+ G + F M+ +KPD YN +I
Sbjct: 407 HLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSN--VKPDRHFYNVMID 464
Query: 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ + D + + M+ E ++P+V T+ L++C K+ A F +Q
Sbjct: 465 TFGKFNCLDHAMETYD--RMLSEG---IEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQ 518
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 108/280 (38%), Gaps = 47/280 (16%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
F L +AR +I +M +GLSP ++ LV AY G E A H LK+
Sbjct: 354 FNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQME 413
Query: 132 SAGVRPLHETLIALARLFGS---KGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY 188
+ V+P T I +R+ S +G K E+L M+ N
Sbjct: 414 ARNVQP--NTFI-FSRILASYRDRGEWQKTFEVLREMKNSN------------------- 451
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
++ Y++MI K +A+E M + G +N
Sbjct: 452 ---------------VKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNT 496
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
L+ C G + A FE M+ E P TYN +I + E +D V+ LLG
Sbjct: 497 LIDCHRKHGYHDRAAELFEEMQ--ERGYLPCPTTYNIMINSLGEQEKWDEVKI---LLGK 551
Query: 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
M + L PNV TY LV+ + +AI A+++
Sbjct: 552 M--QSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKS 589
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 18/263 (6%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IALARLFGSKG 153
MI G P P F+ LV AY +GD+ A LK+ + G +P + I + + ++
Sbjct: 2 MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRN--------KYLEDANKVFLRGAKGGLR 205
L + +E++ E+ ++ + ++L + V N E A V G
Sbjct: 62 LPS--MEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFI 119
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y +I C A A ++ EM+ G + + LL G+ E A
Sbjct: 120 PDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNW 179
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
F+ M+ +D P+ TY +I AY + R ++ E MM+ + PN+ TY
Sbjct: 180 FDEMQ--QDGCAPNVVTYTALIHAYLKTRKLSRANEIFE---MMLSNG--CVPNIVTYTA 232
Query: 326 LVECFTKYCAVTEAIRHFRALQN 348
L++ K +A + + ++N
Sbjct: 233 LIDGHCKAGETEKACQIYARMKN 255
>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
Length = 793
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 135/313 (43%), Gaps = 33/313 (10%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
+YD MI++G +P +++ L+ + GD A + + L G +P ++ L + +
Sbjct: 483 MYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCY- 541
Query: 151 SKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRN---KYLEDANKVFLRGAKGGLR 205
+KG G+E ++EK Y I +W+IL ++ N + LE K F G +
Sbjct: 542 AKGGNAAGIE---SIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYK 598
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
I++ M+A K G +S A E+ ++ +G +N L+ A A
Sbjct: 599 PDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKI 658
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+ ++ + +KPD +YN VI + + +++ +L M+ D + P V TY
Sbjct: 659 LKQLKSSQ--VKPDVVSYNTVINGFCKQ---GLIKEAQRILSEMIADG--MAPCVVTYHT 711
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR----ALCREGRIIE 381
LV + A E R + NY + HN P+ L R + C+ R E
Sbjct: 712 LVGGY----ASLEMFNEAREVVNY----MIHHNL----KPMELTYRRVVDSYCKAKRYDE 759
Query: 382 LLEALEAMAKDNQ 394
E L ++ +Q
Sbjct: 760 AREFLSEISDTDQ 772
Score = 46.2 bits (108), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 104/257 (40%), Gaps = 26/257 (10%)
Query: 89 NDVIYDMI-AAGLSPGPR----SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
+DV+ D++ L PG R ++ ++ A + G +E A+ GV P T
Sbjct: 160 HDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYN 219
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--------ILVEELVRNKYLEDANKV 195
+ ++G G + I+A +E ++R A + ++ R+ L+ A
Sbjct: 220 VVLDVYGRMGRSWP--RIVALLE----EMRAAGVEPDDFTASTVIAACGRDGLLDQAVAF 273
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F G Y+ ++ KAG+++ AL + EME +G +N L A
Sbjct: 274 FEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYAR 333
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G E A + M + P+T TYN V+ AY RV + L M ++
Sbjct: 334 AGFFEEAAKCLDTMT--SKGLLPNTFTYNTVMTAYANV---GRVDEALALFDRMKKNG-- 386
Query: 316 LQPNVKTYALLVECFTK 332
PNV TY L+ K
Sbjct: 387 YVPNVNTYNLIFGMLGK 403
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 41/238 (17%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M + GL P +++ ++ AY G + A+ R G P T + + G K
Sbjct: 347 MTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSR 406
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
T LE+L EE+ R+ G ++ M
Sbjct: 407 FTAMLEML------------------EEMSRS----------------GCTPNRVTWNTM 432
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
+A K G + M++ G + +N L+S CG AF ++ M
Sbjct: 433 LAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMI--SS 490
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
P TYN ++ +R + Q + + M+++ +PN ++Y+LL++C+ K
Sbjct: 491 GFTPCLTTYNALLNVLSRQGDWSTAQSI---VSKMLKNG--FKPNDQSYSLLLQCYAK 543
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 140/365 (38%), Gaps = 58/365 (15%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
+ + LM+ + +A N V+ + + G +P ++ L+ Y G+ A+
Sbjct: 321 VLINGLMKLEKFNEA---NSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 377
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYL 189
+S G+ P TL ++ + F G + IL M + I A+ ++ L N
Sbjct: 378 VSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRF 437
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
E A + +R D + ++ CK G HS+A+E+ + + G A N L
Sbjct: 438 ESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNAL 497
Query: 250 LSCQATCGIPEVAFATFENM---------------------------------EYGEDYM 276
+ G + A + M E + +
Sbjct: 498 IHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGI 557
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR-LQPNVKTYALLVECFTKYCA 335
+PDT TYN +I R D E + + E R L PNV TY ++++ + K
Sbjct: 558 EPDTFTYNLLIHGMCRIGKLD------EAVNLWNECKSRDLVPNVYTYGVMIDGYCKADK 611
Query: 336 VTEAIRHFRAL--QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393
+ E + F L QN E + V++N +RA CR G +E + + M +
Sbjct: 612 IEEGEKLFTELLTQNLELNS-VVYNT---------LIRAYCRNGNTVEAFKLHDDM--RS 659
Query: 394 QPVPP 398
+ +PP
Sbjct: 660 KGIPP 664
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 102/245 (41%), Gaps = 31/245 (12%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
++++ + +E+ K+F L +Y+ +I C+ G+ A ++ +M +
Sbjct: 601 VMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSK 660
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G TT ++ L+ G E A + M ++ + P+ Y +I Y + D
Sbjct: 661 GIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMR--KEGLLPNVVCYTALIGGYCKLGQMD 718
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+V +V + + + PN TY ++++ ++K + A K+LH
Sbjct: 719 KVVNVLQEM-----SSYDIHPNKITYTVMIDGYSKSGDMKTA-------------AKLLH 760
Query: 358 ---NEGNFGDPLS--LYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS 412
+G D ++ + C+EG+I E + + M+++ P+ Y TLV
Sbjct: 761 EMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLD------EITYTTLVH 814
Query: 413 SWIEP 417
W +P
Sbjct: 815 GWQQP 819
Score = 40.4 bits (93), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 133/349 (38%), Gaps = 46/349 (13%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
+++ + G+SP F + A+ G E A+ GV P ++ L
Sbjct: 234 VFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSP---NVVTYNNLI-- 288
Query: 152 KGLATKGL--EILAAMEKINYDIRQAWLI----LVEELVRNKYLEDANKVFLRGAKGGLR 205
GL G E EK+ D A LI L+ L++ + +AN V + G
Sbjct: 289 HGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFT 348
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+ +Y+ +I CK G+ +AL I +M + G + N ++ G E A
Sbjct: 349 PNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECI 408
Query: 266 FENMEYGEDYMKPDTET----YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
E M + P T + C+ + A + R E+L + ++PN
Sbjct: 409 LEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLR-----EML------LRNMRPNDG 457
Query: 322 TYALLVECFTKYCAVTEAIRH-FRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 380
LV K ++A+ FR L+ G V N + LC+ G +
Sbjct: 458 LLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNA---------LIHGLCKTGNMQ 508
Query: 381 ELLEALEAMAKDNQPVPPRAMILSR-KYRTLVSSWIEPLQEEAELGYEI 428
E + L+ M + R +L + Y TL+S + + + E G+++
Sbjct: 509 EAVRLLKKMLE-------RGFVLDKITYNTLISGCCK--EGKVEEGFKL 548
>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 625
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 21/219 (9%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A +L+ L +++ + KV+ + A+ G+ A +Y+++I CK+GD A + E
Sbjct: 166 HACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSE 225
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
ME+ F +N L+S G+ A + + ME + +KPD TYN +I + +
Sbjct: 226 MESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRME--REGIKPDIVTYNSLIHGFCKE 283
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEG-- 351
R+++ L ++ + PN TY L++ + + + +A+R R +G
Sbjct: 284 ---GRMREAMRLF----KEIRDATPNHVTYTTLIDGYCRLNDLDQALR-LREEMEAQGLY 335
Query: 352 GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
T V +N LR LC GRI + + L M+
Sbjct: 336 PTVVTYNS---------ILRKLCEIGRIRDANKLLNEMS 365
Score = 48.1 bits (113), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 11/217 (5%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
A++R V V M G+ ++ L+ A +GD E A + L S V P
Sbjct: 176 AKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDL 235
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVF- 196
T L L+ KG+ + L + ME+ I DI + L+ + + +A ++F
Sbjct: 236 FTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDI-VTYNSLIHGFCKEGRMREAMRLFK 294
Query: 197 -LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+R A Y +I C+ D AL + EMEA G T +N +L +
Sbjct: 295 EIRDAT----PNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSIL--RKL 348
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
C I + A E E ++PD T N +I AY +
Sbjct: 349 CEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCK 385
>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
[Oryza sativa Japonica Group]
gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 793
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 135/313 (43%), Gaps = 33/313 (10%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
+YD MI++G +P +++ L+ + GD A + + L G +P ++ L + +
Sbjct: 483 MYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCY- 541
Query: 151 SKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRN---KYLEDANKVFLRGAKGGLR 205
+KG G+E ++EK Y I +W+IL ++ N + LE K F G +
Sbjct: 542 AKGGNAAGIE---SIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYK 598
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
I++ M+A K G +S A E+ ++ +G +N L+ A A
Sbjct: 599 PDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKI 658
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+ ++ + +KPD +YN VI + + +++ +L M+ D + P V TY
Sbjct: 659 LKQLKSSQ--VKPDVVSYNTVINGFCKQ---GLIKEAQRILSEMIADG--MAPCVVTYHT 711
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR----ALCREGRIIE 381
LV + A E R + NY + HN P+ L R + C+ R E
Sbjct: 712 LVGGY----ASLEMFNEAREVVNY----MIHHNL----KPMELTYRRVVDSYCKAKRYDE 759
Query: 382 LLEALEAMAKDNQ 394
E L ++ +Q
Sbjct: 760 AREFLSEISDTDQ 772
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 104/257 (40%), Gaps = 26/257 (10%)
Query: 89 NDVIYDMI-AAGLSPGPR----SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
+DV+ D++ L PG R ++ ++ A + G +E A+ GV P T
Sbjct: 160 HDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYN 219
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--------ILVEELVRNKYLEDANKV 195
+ ++G G + I+A +E ++R A + ++ R+ L+ A
Sbjct: 220 VVLDVYGRMGRSWP--RIVALLE----EMRAAGVEPDDFTASTVIAACGRDGLLDQAVAF 273
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F G Y+ ++ KAG+++ AL + EME +G +N L A
Sbjct: 274 FEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYAR 333
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G E A + M + P+T TYN V+ AY RV + L M ++
Sbjct: 334 AGFFEEAAKCLDTMT--SKGLLPNTFTYNTVMTAYANV---GRVDEALALFDRMKKNG-- 386
Query: 316 LQPNVKTYALLVECFTK 332
PNV TY L+ K
Sbjct: 387 YVPNVNTYNLIFGMLGK 403
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 41/238 (17%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M + GL P +++ ++ AY G + A+ R G P T + + G K
Sbjct: 347 MTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSR 406
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
T LE+L EE+ R+ G ++ M
Sbjct: 407 FTAMLEML------------------EEMSRS----------------GCTPNRVTWNTM 432
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
+A K G + M++ G + +N L+S CG AF ++ M
Sbjct: 433 LAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMI--SS 490
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
P TYN ++ +R + Q + + M+++ +PN ++Y+LL++C+ K
Sbjct: 491 GFTPCLTTYNALLNVLSRQGDWSTAQSI---VSKMLKNG--FKPNDQSYSLLLQCYAK 543
>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
Length = 593
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 111/253 (43%), Gaps = 21/253 (8%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRE-------LSAGVRPLHETLIALARLFGSKGLATKG 158
SF ++ Y L D G L + L A P +T L R + + G +
Sbjct: 160 SFRPDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRA 219
Query: 159 LEILAAMEKINY----DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+++ M+K + A+L + L++ + E A +V+ R K R E Y LM
Sbjct: 220 EGVISEMQKNGLPPTATVYNAYL---DGLLKARCSEKAVEVYQRMKKERCRTNTETYTLM 276
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I KA ++L++ EM+ G + L++ A G+ E A FE M+
Sbjct: 277 INVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH 336
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
+PD YN +++AY+RA Q +E+ +M +H +P+ +Y +LV+ + +
Sbjct: 337 --EPDVYAYNALMEAYSRA---GLPQGASEIFSLM--EHMGCEPDRASYNILVDAYGRAG 389
Query: 335 AVTEAIRHFRALQ 347
EA F+ L+
Sbjct: 390 LHQEAEAAFQELK 402
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 6/216 (2%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M G P ++ LV A+ G E A + AG P AL +
Sbjct: 292 VFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 351
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
GL EI + ME + + R ++ ILV+ R ++A F + G+R T +
Sbjct: 352 RAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMK 411
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ L+++ K+G+ + E+ ++ +G TF N +L+ G + M
Sbjct: 412 SHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAM 471
Query: 270 E-----YGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
E PDT TYN ++ Y RA DR++
Sbjct: 472 ERGGDDDAGGGAAPDTSTYNVLVNVYGRAGYLDRME 507
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 130/323 (40%), Gaps = 18/323 (5%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R R A +++ +M GL+P + ++ AY G A+ L+ G +P
Sbjct: 122 CRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNV 181
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFL 197
T AL + F ++G K + +L M +N D L++ + + + ++E A ++
Sbjct: 182 WTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCI-DGHIESAFRLLR 240
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
GL A Y+ +I CK G A + +E G FN L++ G
Sbjct: 241 LMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSG 300
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
++A+ E M PDT TY+ I+ + + Q+ +G M++ K ++
Sbjct: 301 KADIAWKFLEKMVSAG--CTPDTYTYSSFIEHLCKMKG---SQEGLSFIGEMLQ--KDVK 353
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
P+ Y +++ K R + + + V+ + +RA C EG
Sbjct: 354 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVV--------TYTTSMRAYCIEG 405
Query: 378 RIIELLEALEAMAKDNQPVPPRA 400
R+ E L M+K+ V A
Sbjct: 406 RLNEAENVLMEMSKNGVTVDTMA 428
>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06710, mitochondrial; Flags: Precursor
gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
Length = 987
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 109/267 (40%), Gaps = 20/267 (7%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IAL 145
R V+ M+ G P P+ F+ LV AY +GDH A LK+ + G P + I +
Sbjct: 355 RCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 414
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLIL----VEELVR-----NKYLEDANKVF 196
+ G K + ++L EK ++ A ++L V R KY E A V
Sbjct: 415 GSICGDKD--SLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY-EKAFSVI 471
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
G Y ++ C A A + EM+ G +A + + ++
Sbjct: 472 REMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKA 531
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G+ E A F M E P+ TY +I AY +A+ +V EL M+ +
Sbjct: 532 GLIEQARKWFNEMR--EVGCTPNVVTYTALIHAYLKAK---KVSYANELFETMLSEG--C 584
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHF 343
PN+ TY+ L++ K V +A + F
Sbjct: 585 LPNIVTYSALIDGHCKAGQVEKACQIF 611
Score = 39.7 bits (91), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 95/254 (37%), Gaps = 24/254 (9%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M G +P ++ L+ AY A + LS G P T AL G
Sbjct: 543 EMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAG 602
Query: 154 LATKGLEILAAM------EKINYDIRQ-----------AWLILVEELVRNKYLEDANKVF 196
K +I M ++ +Q + L++ ++ +E+A K+
Sbjct: 603 QVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLL 662
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ G +YD +I CK G A E+ EM G AT + ++ L+
Sbjct: 663 DAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKV 722
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
++A M E+ P+ Y +I + D + +L+ MM E K
Sbjct: 723 KRQDLASKVLSKML--ENSCAPNVVIYTEMIDGLCKVGKTD---EAYKLMQMMEE--KGC 775
Query: 317 QPNVKTYALLVECF 330
QPNV TY +++ F
Sbjct: 776 QPNVVTYTAMIDGF 789
>gi|357166198|ref|XP_003580632.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Brachypodium distachyon]
Length = 644
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M AG + +N LL A G+ + A F+ M ED ++PD +YN +I+ Y RA
Sbjct: 199 MRLAGVEPSRVTYNCLLDGLANAGLLDTAINVFDAMS-TEDRVRPDVVSYNILIKGYCRA 257
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
R QD L M E L P+ TY L++ ++ IR F+ ++ G
Sbjct: 258 ---GRAQDAMARLAHMRE-QAELSPDKVTYLTLMQLHYSEGTFSQCIRLFQEMEEMGMGK 313
Query: 354 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP 395
+ + L + ALC+EG+ E L E M K P
Sbjct: 314 DIPQHA------YVLVIGALCKEGKPFEGLAVFERMLKSGYP 349
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 13/248 (5%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLK--RELSAGVRPLHETLIALARLFGSKGLATKGLEILA 163
S++ L+ Y G + AM L RE A + P T + L +L S+G ++ + +
Sbjct: 246 SYNILIKGYCRAGRAQDAMARLAHMRE-QAELSPDKVTYLTLMQLHYSEGTFSQCIRLFQ 304
Query: 164 AMEKINY--DIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220
ME++ DI Q A+++++ L + + VF R K G A +Y +I K
Sbjct: 305 EMEEMGMGKDIPQHAYVLVIGALCKEGKPFEGLAVFERMLKSGYPAKAAMYTALIDTMGK 364
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
G + A+ + M+A+G + +++C G + A F N E + +
Sbjct: 365 FGRENEAMLLFERMKASGLELDAITYGVIVNCLCRFGKLDEAILCFRNCV--EKGIAVNA 422
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
Y +I + +A D+ Q++ E + + K P+ Y +L++ K + +A
Sbjct: 423 IFYTSLIDGFGKAGMVDQAQELFEEMKV-----KGFVPDSYCYNVLIDGLAKAGRLDDAC 477
Query: 341 RHFRALQN 348
++ +++
Sbjct: 478 ALYKRMED 485
>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Cucumis sativus]
Length = 576
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 8/232 (3%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P +F LV A G E A ++ AG P AL + G EI
Sbjct: 293 PNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEI 352
Query: 162 LAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220
+ M+ + + R ++ I+V+ R EDA VF + G+ T + + L+++
Sbjct: 353 FSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSS 412
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
AG+ + +I +M +G TF N +L+ G F M+ G + D
Sbjct: 413 AGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGP--CRADI 470
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
TYN +I Y RA +R++++ +LL K L+P+V T+ + +++
Sbjct: 471 STYNILINVYGRAGFVERMEELFQLL-----PAKNLEPDVVTWTSRIGAYSR 517
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ +L++ ++ LE A VF K GL + +Y+ I K G++ A+EI + M+
Sbjct: 193 YALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMK 252
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
G TT + L++ +A F+ M KP+ T+ ++ A R
Sbjct: 253 RDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMR--TQRCKPNICTFTALVNALAREGL 310
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
++ +++ E + +P+V Y L+E +++
Sbjct: 311 CEKAEEIFEQM-----QEAGYEPDVYAYNALMESYSR 342
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 92/415 (22%), Positives = 168/415 (40%), Gaps = 44/415 (10%)
Query: 27 RSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNG---------SVVSAA-EQGLR---LIFM 73
+ A+ E +R++++ Q K +++ST G +V AA +G F
Sbjct: 57 KKAICCFEFAVKRERKKNEQGKLASAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFS 116
Query: 74 EELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG-DHEGAMHSLKRELS 132
+ + R+ + Y M GL P +++ ++ A G + + + L
Sbjct: 117 AIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLR 176
Query: 133 AGVRPLHETLIALARLFGSKGL--ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE 190
G++P T +L + GL A + L I+ DI + L++ + + L+
Sbjct: 177 NGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIF-TYNTLLDAVCKGGQLD 235
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
A ++ + Y MI KAG +A + EM+ G +N LL
Sbjct: 236 MAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLL 295
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
S A G E A ME ++ D TYN ++ Y + YD V+ V E +
Sbjct: 296 SIYAKLGRFEEAMDVCREME--NSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEM---- 349
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLS 367
+ + PN+ TY+ L++ ++K EA+ FR + + G K VL+ S
Sbjct: 350 -KARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFK--KAGLKADVVLY---------S 397
Query: 368 LYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEA 422
+ ALC+ G + + L+ M K+ + P + Y +++ ++ P E+
Sbjct: 398 ALIDALCKNGLVESAVSLLDEMTKEG--IRPNVV----TYNSIIDAFGRPATTES 446
>gi|414881861|tpg|DAA58992.1| TPA: hypothetical protein ZEAMMB73_732512 [Zea mays]
Length = 642
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 7/209 (3%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G SP + L+ AY+ N D+ A +K S+G+ P L L +++ GL K
Sbjct: 250 GHSPNLFHYSSLLNAYSENSDYGKAELLMKDLRSSGLTPNKVMLTTLLKVYSKGGLFEKA 309
Query: 159 LEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+L +E + + + IL++ LV+ +++AN +F + G+++ + +MI+
Sbjct: 310 KGLLTELEASGFAQDEMPYCILIDGLVKGGKIQEANILFNEMKEKGVKSDGYAFSIMISA 369
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
+ G H + ++A E E+ N L + E + M+ E +
Sbjct: 370 LHRGGHHQESKQLAKEFESENASYDLVMLNTSLRTYCSTNDMESVMRMLKKMD--ESNIS 427
Query: 278 PDTETYNCVIQAYTRAE----SYDRVQDV 302
PD T+N +I+ + A+ +Y V+D+
Sbjct: 428 PDNITFNTLIRYFCNAKVCHLAYKTVEDM 456
>gi|449525305|ref|XP_004169658.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29290-like [Cucumis sativus]
Length = 600
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 90/213 (42%), Gaps = 5/213 (2%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D M+ PG + ++ A + G + A+ + L G++P + AL
Sbjct: 311 DTYVKMVQNSFKPGNDTMQAIIGASSKEGKWDFALRVFQDMLKCGLQPNSVSFNALINAL 370
Query: 150 GSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G T + M+ + + D+ W L+ L + DA +F + ++
Sbjct: 371 GKAKEVTLAFSVYNVMKSMGHSPDV-YTWNALLGALYKANRYSDAIHLFEFVKREKVQLN 429
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
IY+ ++ K G A++I +EME +G +T +N +++ PE+A +E
Sbjct: 430 IHIYNTILMSCSKLGLWERAVQILWEMEVSGLSISTSSYNIVMTACEMARKPEIALQVYE 489
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
M + + + PDT T+ +I+ +D V+
Sbjct: 490 RMVHQK--LTPDTFTHLSLIRCCIWGSLWDEVE 520
>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 566
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 108/262 (41%), Gaps = 19/262 (7%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I + L R +A N ++ +M SP +++ L+ + L+G E A+ L+
Sbjct: 277 ILLRSLCNEGRWEEA---NVLLAEMNGDERSPSTVTYNILIGSLALHGRTEHALEVLEEM 333
Query: 131 LSAGVRPL---HETLIALARLFGSKGLATKGL-EILAAMEKINYDIRQAWLILVEELVRN 186
+ A +P + +IA G L K L +++ N A L EE
Sbjct: 334 IRARFKPTASSYNPIIAHLCKDGKLDLVVKCLDQMMYRHCNPNEGTYNAIATLCEE---- 389
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+++A + +T E Y ++I C+ G+ A ++ YEM G +F +
Sbjct: 390 GMVQEAFSIIQSLGNKQHSSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTY 449
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
+ L+ G+ A F ME KPDTE YN +I ++ D DV E++
Sbjct: 450 SSLIRGLCMEGMLNEAIEIFSVMEENN---KPDTENYNSLILGCCKSRRTDLALDVFEIM 506
Query: 307 GMMVEDHKRLQPNVKTYALLVE 328
K PN TY +LVE
Sbjct: 507 -----VGKGYLPNETTYTILVE 523
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 98/452 (21%), Positives = 165/452 (36%), Gaps = 82/452 (18%)
Query: 12 ISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAE----QG 67
S VL+ +Q + P + + P KT + +Q+ ++ + D+ V + Q
Sbjct: 41 FSKVLASTQITISPKDTIFTLPNWKTGKVEQKSKELRLTDAFFHLEFMVEKGQKPDVFQA 100
Query: 68 LRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSL 127
+L++ +L + + R A +V ++ MI +G+ P S+ LV + G+ AM +
Sbjct: 101 TQLLY--DLCKACKMRKAIKVMEM---MIGSGIIPDASSYTFLVSSLCRKGNVGYAMQLV 155
Query: 128 KRELSAGVRPLHETLIALARLFGSKGLATKGLEIL---------------AAMEKINYDI 172
+ G T +L R G T+ L++L + + + Y
Sbjct: 156 DKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKE 215
Query: 173 RQA---------------------WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
R A + +L+ L + EDA ++F G Y
Sbjct: 216 RGADEASKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTEDAIRLFRELPSKGFSPNVVSY 275
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
++++ C G A + EM R +T +N L+ A G E A E M
Sbjct: 276 NILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNILIGSLALHGRTEHALEVLEEMIR 335
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY-ALLVECF 330
KP +YN +I + D V V L MM ++ PN TY A+ C
Sbjct: 336 AR--FKPTASSYNPIIAHLCKDGKLDLV--VKCLDQMM---YRHCNPNEGTYNAIATLC- 387
Query: 331 TKYCAVTEAIRHFRALQN---------YEGGTKVLHNEGNFGDPLSLY------------ 369
+ V EA ++L N Y+ L +GN L
Sbjct: 388 -EEGMVQEAFSIIQSLGNKQHSSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDS 446
Query: 370 ------LRALCREGRIIELLEALEAMAKDNQP 395
+R LC EG + E +E M ++N+P
Sbjct: 447 FTYSSLIRGLCMEGMLNEAIEIFSVMEENNKP 478
>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
Length = 333
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 114/266 (42%), Gaps = 29/266 (10%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG--------DHEGAMHSLKRELSAGV 135
DA RV D +M+ G P +++ L LNG D EG ++ ++ GV
Sbjct: 34 DALRVRD---EMVGCGCLPDVVTYNTL-----LNGLCKERRLLDAEGLLNEMRER---GV 82
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDAN 193
P T L + +G K L++ M +++ DI + L++ + R L+ AN
Sbjct: 83 PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDI-VTYNTLIDGMCRQGDLDKAN 141
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
++ + Y ++I C+ G +A EM G + +N ++
Sbjct: 142 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 201
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
G + M + + PD TYN +I Y + D++ D +LL MM +
Sbjct: 202 CRSGNVSKGQKFLQKMMVNK--VSPDLITYNTLIHGYIKE---DKMHDAFKLLNMM--EK 254
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEA 339
+++QP+V TY +L+ F+ + V EA
Sbjct: 255 EKVQPDVVTYNMLINGFSVHGNVQEA 280
>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 876
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 110/279 (39%), Gaps = 39/279 (13%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
+N ++ M+ G P +++ L+ +Y A+ G P T L
Sbjct: 399 INKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLID 458
Query: 148 LFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+ G LE+ M+ + +++ L + +L A+K+F + G
Sbjct: 459 IHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVP 518
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y++MIA KA ++ +AL++ +M++AG ++ ++ CG + A A F
Sbjct: 519 NLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVF 578
Query: 267 ENME----------YG-----------------------EDYMKPDTETYNCVIQAYTRA 293
M+ YG ++P+ T N ++ A+ R
Sbjct: 579 SEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRV 638
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
++ D LL M+E L P+++TY LL+ C T+
Sbjct: 639 H---KLADAYNLLQSMLE--LGLNPSLQTYTLLLSCCTE 672
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 86/368 (23%), Positives = 132/368 (35%), Gaps = 69/368 (18%)
Query: 84 DAPRVNDVIY---DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
D RV+D I M G SP +++ ++ G E A+ + L G+ P
Sbjct: 314 DIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTV 373
Query: 141 TLIALARLF---GSKGLATK------GLEILAAMEKINY---------DIRQAWLI---- 178
T AL G G+A K G LA + N DI +A ++
Sbjct: 374 TYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKM 433
Query: 179 --------------LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
L+ E ++ YL +A + + + Y +I+ CK G
Sbjct: 434 LKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKL 493
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
+A YEM G + + ++ G +VA + FE ME E+ ETYN
Sbjct: 494 DSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERME--ENGCSASIETYN 551
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 344
+I ++ +R + + M E + LQPN TY L+ K A A + F
Sbjct: 552 AIISGLSKG---NRFSEAEKFCAKMTE--QGLQPNTITYTSLINGLCKNTATNLAFKIFH 606
Query: 345 ------ALQNYEGGTKVLHNEGNFG-----------------DPLSLYLRALCREGRIIE 381
L N T +++ G D S + LCREGR E
Sbjct: 607 EMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTENGCEPTIDTYSTLVSGLCREGRSNE 666
Query: 382 LLEALEAM 389
+ +E M
Sbjct: 667 ASQLVENM 674
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 104/271 (38%), Gaps = 38/271 (14%)
Query: 76 LMQHARNRD-APRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLN------GDHE---GAMH 125
+++ RN D RV D ++ G+S G + Y+ N G + A +
Sbjct: 130 MIKACRNEDELKRVTDFLH-----GISSSDSGLFGFTL-YSFNTLLLQLGKFDMVTSAQN 183
Query: 126 SLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI-NYDIRQ---AWLILVE 181
+ S+GV+P T + + KG K E + KI +D+ + L+
Sbjct: 184 VYAQIFSSGVKPSLLTFNTMINILCKKG---KVQEAVLVFNKIFQFDLCPDAFTYTSLIL 240
Query: 182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA 241
RN+ L+ A +VF R K G Y +I C G A+++ EM G
Sbjct: 241 GHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEP 300
Query: 242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
T + + +S + C I V A G+ P +TY +I RA +
Sbjct: 301 TVYTYTVPIS--SLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELA-- 356
Query: 302 VAELLGMMVEDHKRLQ----PNVKTYALLVE 328
+GM HK L+ PN TY L+
Sbjct: 357 ----IGMY---HKMLKEGLVPNTVTYNALIN 380
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 10/245 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ +M++ G+SP ++ L+ + + G A+ + +S + P T L F
Sbjct: 217 DLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGF 276
Query: 150 GSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+G + +LA M K I D+ + L++ K + A +F A+GG+ A
Sbjct: 277 CKEGRVKEAKNVLAMMMKQGIKPDVV-TYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTAN 335
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
+ Y++MI CK A+ + EM + +N L+ C ++++A
Sbjct: 336 VQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLI--DGLCKSGKISYALKL 393
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
E + + D TYN ++ A + D+ +A L M E +QP++ TY +L+
Sbjct: 394 VDEMHDRGVPHDKITYNSILDALCKNHQVDKA--IALLTKMKDEG---IQPDMYTYTILI 448
Query: 328 ECFTK 332
+ K
Sbjct: 449 DGLCK 453
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 133/320 (41%), Gaps = 22/320 (6%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M+AAG +P +F+G++ + + + E A + + +G +P + + L
Sbjct: 138 VLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLA 197
Query: 151 SKGLATKGLEILA--AMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G + L+IL+ AM Y + L+ L R LE A +VF + G +
Sbjct: 198 KIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPN 257
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y +IA C+A A E+ +M A +N L++ G + A +
Sbjct: 258 KYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYR 317
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M G ++P T+N +I + + R ++ +G K L + TY +L+
Sbjct: 318 EMSGGAG-LQPTIVTFNTLIDGFCKLGKLGRANELVAEMGT-----KGLAADTCTYRILI 371
Query: 328 ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEA 385
++ + EA+ ++ ++ K L DP+S ++ LC+ G I +
Sbjct: 372 AGLSRATKLDEALEVYKQMRE----KKFLL------DPVSCVSFVGGLCKTGNIDQAYAV 421
Query: 386 LEAMAKDNQ-PVPPRAMILS 404
EA K P P ILS
Sbjct: 422 FEATRKSGAVPNPETFRILS 441
>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 874
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 152/372 (40%), Gaps = 27/372 (7%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R R V+ + DM+ G+SP +F+ L+ A + + A G +P
Sbjct: 124 RERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEF 183
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRG 199
T L R + GL KGLE+L +ME + + +V R +D+ K+ +
Sbjct: 184 TFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKM 243
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA----TTFHFNHLLSCQAT 255
+ GL ++ I+ CK G +A I +ME + + +N +L
Sbjct: 244 REEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCK 303
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G+ E A FE++ +D + ++YN +Q R + + V L M++ K
Sbjct: 304 VGLLEDAKTLFESIRENDDLV--SLQSYNIWLQGLVRHGKFIEAETV---LKQMID--KG 356
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 375
+ P++ +Y +L++ K +++A + L G V + +G L C
Sbjct: 357 IGPSIYSYNILMDGLCKLGMLSDA-KTIVGLMKRNG---VSPDAVTYG----CLLHGYCS 408
Query: 376 EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTL-----VSSWIEPLQEEAELGYEIDY 430
G++ L+ M ++N P A + +L +S E L++ E GY +D
Sbjct: 409 VGKVDAAKSLLQEMMRNN--CLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDT 466
Query: 431 IARYISEGGLTG 442
+ I GL G
Sbjct: 467 VTCNIIVDGLCG 478
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 18/212 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L + +A +F L+ Y++ I CK G S+A + +ME G
Sbjct: 530 LLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKG 589
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYD 297
+ +N L+ GI F M E E + P+ TYN IQ
Sbjct: 590 CHKSLETYNSLI---LGLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEG---G 643
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+V+D LL M++ K + PNV ++ L+ F K A F + G + L+
Sbjct: 644 KVEDATNLLDEMMQ--KNIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAVSICGQKEGLY 701
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
SL L G++++ E LEA+
Sbjct: 702 ---------SLMFNELLAAGQLLKATELLEAV 724
>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Glycine max]
Length = 703
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 138/329 (41%), Gaps = 35/329 (10%)
Query: 77 MQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSL-----KREL 131
++ AR DA V V + M++A + P S L ++ +N H S+ KR
Sbjct: 52 LRKARQYDA--VVSVYHKMVSALVLPRFTSLSALTESF-VNTHHPSFAFSVLSLMTKRGF 108
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI----RQAWLILVEELVRNK 187
V L+ L R G K + + + M++ NYD + LV + K
Sbjct: 109 GVNVYNLNLVLKGFCR----SGQCDKAMSLFSQMKR-NYDCVVPDCVTYNTLVNGFCKAK 163
Query: 188 YLEDANKVFLRGAKGG-LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
L +A +F KGG R Y ++I CK+G+ L + EME G A F +
Sbjct: 164 RLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVY 223
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
+ L+S G E F+ M + + P+ TY+C++Q R R ++ +E+L
Sbjct: 224 SSLISAFCGEGDIETGRELFDEMLRRK--VSPNVVTYSCLMQGLGRT---GRWREASEML 278
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL-QNYEGGTKVLHNEGNFGDP 365
M + ++P+V Y +L + K +AI+ + Q E + +N
Sbjct: 279 KDMTA--RGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYN------- 329
Query: 366 LSLYLRALCREGRIIELLEALEAMAKDNQ 394
+ + LC+E R+ + +E M K +
Sbjct: 330 --VVVNGLCKEDRMDDAFGVVEMMVKKGK 356
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 12/247 (4%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL + L+ A+ GD E L V P T L + G G +
Sbjct: 215 GLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREA 274
Query: 159 LEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
E+L M + D+ A+ +L + L +N DA KV + G Y++++
Sbjct: 275 SEMLKDMTARGVRPDV-VAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVN 333
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENMEYGED 274
CK +A + M G+ +N LL + CG ++ A ++ + +
Sbjct: 334 GLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLL--KGLCGAGKIHEAMDLWKLLLSEKF 391
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
++KPD T N +IQ + RV D A + MVE LQ N+ TY L+E +
Sbjct: 392 HVKPDVFTCNNLIQGLCKE---GRVHDAARIHSSMVE--MGLQGNIVTYNFLIEGYLAAR 446
Query: 335 AVTEAIR 341
+ EA++
Sbjct: 447 KLIEALK 453
>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
Length = 702
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 135/313 (43%), Gaps = 33/313 (10%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
+YD MI++G +P +++ L+ + GD A + + L G +P ++ L + +
Sbjct: 392 MYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCY- 450
Query: 151 SKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRN---KYLEDANKVFLRGAKGGLR 205
+KG G+E ++EK Y I +W+IL ++ N + LE K F G +
Sbjct: 451 AKGGNAAGIE---SIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYK 507
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
I++ M+A K G +S A E+ ++ +G +N L+ A A
Sbjct: 508 PDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKI 567
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+ ++ + +KPD +YN VI + + +++ +L M+ D + P V TY
Sbjct: 568 LKQLKSSQ--VKPDVVSYNTVINGFCKQ---GLIKEAQRILSEMIADG--MAPCVVTYHT 620
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR----ALCREGRIIE 381
LV + A E R + NY + HN P+ L R + C+ R E
Sbjct: 621 LVGGY----ASLEMFNEAREVVNY----MIHHNL----KPMELTYRRVVDSYCKAKRYDE 668
Query: 382 LLEALEAMAKDNQ 394
E L ++ +Q
Sbjct: 669 AREFLSEISDTDQ 681
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 26/251 (10%)
Query: 89 NDVIYDMI-AAGLSPGPR----SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
+DV+ D++ L PG R ++ ++ A + G +E A+ GV P T
Sbjct: 69 HDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYN 128
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--------ILVEELVRNKYLEDANKV 195
+ ++G G + I+A +E ++R A + ++ R+ L+ A
Sbjct: 129 VVLDVYGRMGRSWP--RIVALLE----EMRAAGVEPDDFTASTVIAACGRDGLLDQAVAF 182
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F G Y+ ++ KAG+++ AL + EME +G +N L A
Sbjct: 183 FEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYAR 242
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G E A + M + P+T TYN V+ AY RV + L M ++
Sbjct: 243 AGFFEEAAKCLDTMT--SKGLLPNTFTYNTVMTAYANV---GRVDEALALFDRMKKNG-- 295
Query: 316 LQPNVKTYALL 326
PNV TY L+
Sbjct: 296 YVPNVNTYNLI 306
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 41/238 (17%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M + GL P +++ ++ AY G + A+ R G P T + + G K
Sbjct: 256 MTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSR 315
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
T LE+L EE+ R+ G ++ M
Sbjct: 316 FTAMLEML------------------EEMSRS----------------GCTPNRVTWNTM 341
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
+A K G + M++ G + +N L+S CG AF ++ M
Sbjct: 342 LAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMI--SS 399
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
P TYN ++ +R + Q + + M+++ +PN ++Y+LL++C+ K
Sbjct: 400 GFTPCLTTYNALLNVLSRQGDWSTAQSI---VSKMLKNG--FKPNDQSYSLLLQCYAK 452
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 129/319 (40%), Gaps = 18/319 (5%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R R A +++ +M GL+P + ++ AY G A+ L+ G +P
Sbjct: 300 CRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNV 359
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFL 197
T AL + F ++G K + +L M +N D L++ + + + ++E A ++
Sbjct: 360 WTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCI-DGHIESAFRLLR 418
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
GL A Y+ +I CK G A + +E G FN L++ G
Sbjct: 419 LMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSG 478
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
++A+ E M PDT TY+ I+ + + Q+ +G M++ K ++
Sbjct: 479 KADIAWKFLEKMVSAG--CTPDTYTYSSFIEHLCKMKG---SQEGLSFIGEMLQ--KDVK 531
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
P+ Y +++ K R + + + V+ + +RA C EG
Sbjct: 532 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTS--------MRAYCIEG 583
Query: 378 RIIELLEALEAMAKDNQPV 396
R+ E L M+K+ V
Sbjct: 584 RLNEAENVLMEMSKNGVTV 602
>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
Length = 713
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 112/274 (40%), Gaps = 8/274 (2%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I+ + +A RD +M++ G+ F ++ Y G++E A H ++
Sbjct: 168 IYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKF 227
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYL 189
+ + P ++ + + G +LA ME+ + + ++ +
Sbjct: 228 KAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDE 287
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
E F R GL T Y ++ KAG+ + AL+I EM+ G + +
Sbjct: 288 EKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMI 347
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ A G AF +E+M +KPD TYN ++ A+ +A D+ V E +
Sbjct: 348 MDGYARGGDFTAAFKVWEDMVSAG--LKPDIVTYNILVHAFCKAGRMDKALGVLENI--- 402
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
RL P ++TY +++ + K + +A+ F
Sbjct: 403 --QANRLLPTIETYTSILDGYVKGGHIQKALEVF 434
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 138/332 (41%), Gaps = 32/332 (9%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D++ +M G+SP + ++ Y GD A + +SAG++P T L F
Sbjct: 327 DILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAF 386
Query: 150 GSKGLATKGLEILAAMEKINYD----IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
G K L +L E I + + + +++ V+ +++ A +VF R GLR
Sbjct: 387 CKAGRMDKALGVL---ENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLR 443
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y+ +++ KA NA + EM A G + + L A G E AF
Sbjct: 444 PGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGM 503
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
F+ M+ ++ + D Y +++A ++ + R +V + + H R+ TY
Sbjct: 504 FQRMK--KENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRI-----TYCT 556
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELL 383
+++ + + +++A + +Q + G D + +++A R G E+
Sbjct: 557 MLDGWARKGELSKARDLLKDMQKH----------GFHLDTICYTSFIKACFRSGDTEEVT 606
Query: 384 EALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
E L M + V +R Y TL+ W+
Sbjct: 607 ETLAVMREKKLEVN------ARTYTTLIHGWL 632
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 113/263 (42%), Gaps = 10/263 (3%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R +V+D++ +M + G P S++ L+ AY +G + AM + +AG P T
Sbjct: 296 RRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTY 355
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAK 201
L LFG G ++ M+ N D A + IL+E Y ++ +F +
Sbjct: 356 SVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE 415
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
+ E Y+ +I K G H +A +I M A + ++ + ++ + E
Sbjct: 416 ENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEE 475
Query: 262 AFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
A F M E G + P ETY+ ++ ++ R V++ +L +V+ + N
Sbjct: 476 ALVAFNTMHEVGSN---PSIETYHSLLYSFARG---GLVKESEAILSRLVDSG--IPRNR 527
Query: 321 KTYALLVECFTKYCAVTEAIRHF 343
T+ +E + + EA++ +
Sbjct: 528 DTFNAQIEAYKQGGKFEEAVKTY 550
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ + IY +MI+ + G LE+ EM + G + F + L++ G E +
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLE 197
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTY 323
+ M+ D + P TYN VI A R D LLG+ E H+ +QP++ TY
Sbjct: 198 LLDRMK--NDKISPSILTYNTVINACARGG-----LDWEGLLGLFAEMRHEGIQPDIVTY 250
Query: 324 ALLVECFTKYCAV 336
L+ CA+
Sbjct: 251 NTLLSA----CAI 259
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 100/234 (42%), Gaps = 12/234 (5%)
Query: 100 LSPGPRSFHGLVVAYTLNG-DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
+SP +++ ++ A G D EG + G++P T L +GL +
Sbjct: 207 ISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEA 266
Query: 159 LEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+ M I D+ + LVE + + LE + + A GG Y++++
Sbjct: 267 EMVFRTMNDGGIVPDL-TTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLE 325
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
K+G A+ + ++M+AAG ++ LL+ G + F +E
Sbjct: 326 AYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF--LEMKSSNT 383
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY-ALLVEC 329
PD TYN +I+ + + ++V L MVE++ ++P+++TY ++ C
Sbjct: 384 DPDAATYNILIEVFGEGGYF---KEVVTLFHDMVEEN--IEPDMETYEGIIFAC 432
>gi|15219388|ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g79490, mitochondrial; AltName: Full=Protein EMBRYO
DEFECTIVE 2217; Flags: Precursor
gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis thaliana]
gi|332198129|gb|AEE36250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 836
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 119/272 (43%), Gaps = 11/272 (4%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGL--VVAYTLNGDH-EGAMHSLKRELSAGVRP 137
+ RD + + +M+ S G SF+ V+ Y + E A K+ +G +
Sbjct: 217 QGRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKI 276
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVF 196
+T L LF +KGL K EI +MEK + + + +++ L ++ L+ A K+F
Sbjct: 277 DTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLF 336
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ + LR + ++ ++ KAG ++++ EM+ G + F L+ A
Sbjct: 337 QQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKA 396
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G + A ++ M+ + +P+ Y +I+++ ++ + V + + +
Sbjct: 397 GKLDTALRLWDEMK--KSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDM-----EKAGF 449
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
P TY+ L+E V A++ + ++ N
Sbjct: 450 LPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTN 481
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 7/191 (3%)
Query: 67 GLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHS 126
GL + +E HA++ V DM AG P P ++ L+ + +G + AM
Sbjct: 419 GLYTMIIES---HAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475
Query: 127 LKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRN 186
+AG+RP + I+L L +K L +IL M+ + Y + ++ +++
Sbjct: 476 YNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYIKD 535
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM-EAAGRMATTFH 245
++ A K G++ + I + K G + +A + + +AG++ +
Sbjct: 536 ASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLY 595
Query: 246 ---FNHLLSCQ 253
HL+ CQ
Sbjct: 596 TSILAHLVRCQ 606
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 122/292 (41%), Gaps = 16/292 (5%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V D I G+ SF+ L+ + A+ L + G P + T +
Sbjct: 184 VFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLC 243
Query: 151 SKGLATKGLEILAAME-KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
KG + ++L M+ K + R + ILV R +L++A V ++ +
Sbjct: 244 KKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAW 303
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y++MI+ CK G + A+ + EME +N L++ G E F E M
Sbjct: 304 TYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEM 363
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
E G MKP++ TYN +++ + + D V + + P++ TY L+
Sbjct: 364 E-GRG-MKPNSVTYNVMVKWFVKKGKMDEVDKTVRKM-----EESGCLPDIVTYNTLI-- 414
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381
+ +C V + FR + E G K L + L+ LRALCRE ++ E
Sbjct: 415 -SWHCKVGKMDEAFRLMD--EMGRKGLKMD---DVTLNTMLRALCRERKLDE 460
Score = 39.7 bits (91), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 120/302 (39%), Gaps = 20/302 (6%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
+I +M G+ P +++ +V + G + ++++ +G P T L
Sbjct: 359 LIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHC 418
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G + ++ M + + L ++ L R + L++A+ + + G +
Sbjct: 419 KVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEV 478
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y +I K S AL + EM+ + + +N +++ G A +
Sbjct: 479 SYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLD-- 536
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
E E + PD TYN +I Y + +V+ + MVE K +P+V V C
Sbjct: 537 ELLESGLVPDEITYNTIIHGYCQE---GQVEKAFQFHNKMVE--KNFKPDV------VTC 585
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALE 387
T C + + +AL+ + ++G D +S + +LC+E R E + LE
Sbjct: 586 NTLLCGLCKEGMLEKALKLFNTWI----SKGKDVDAVSYNTIILSLCKEKRFGEAFDLLE 641
Query: 388 AM 389
M
Sbjct: 642 EM 643
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 18/246 (7%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALA 146
+++ DM+A G ++ L+ + +G E + LK G++P ++ LIA
Sbjct: 287 ELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAAL 346
Query: 147 RLFGSKGLATKGLEIL----AAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
G LA + L+++ + +NY+ A L + K ++A +F + +
Sbjct: 347 CKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACL------CKQKRADEALSIFEKLGEV 400
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G Y+ M + G AL + EM G +N L+SC G+ + A
Sbjct: 401 GCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEA 460
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ME KP +YN V+ + RV D E+L MV+ K +PN T
Sbjct: 461 IELLVDMEMESSECKPSVVSYNIVLLGLCKVS---RVSDAIEVLAAMVD--KGCRPNETT 515
Query: 323 YALLVE 328
Y L+E
Sbjct: 516 YTFLIE 521
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 121/310 (39%), Gaps = 50/310 (16%)
Query: 118 GDHEGAMHSLKRELSAGVRP---LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ 174
G+ +++ L+ ++ G +P L LI LF SK + K ++++ +E +
Sbjct: 71 GNFNESLYFLRHLVNKGHKPDVVLCTKLIH--GLFTSKTI-DKAIQVMHILENHGHPDLI 127
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
A+ ++ R ++ A +V R G Y+++I C G +ALE ++
Sbjct: 128 AYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQL 187
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
T + L+ G + A + M E ++PD TYN +I+ R
Sbjct: 188 LKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEML--EINLQPDMFTYNSIIRGMCREG 245
Query: 295 SYDRVQDVA--------------------------------ELLGMMVEDHKRLQPNVKT 322
DR + EL+ MV + + NV T
Sbjct: 246 YVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVA--RGCEANVVT 303
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL 382
Y++L+ + V E + + ++ K L +G DPL + ALC+EGR+
Sbjct: 304 YSVLISSVCRDGKVEEGVGLLKDMKK-----KGLKPDGYCYDPL---IAALCKEGRVDLA 355
Query: 383 LEALEAMAKD 392
+E L+ M D
Sbjct: 356 IEVLDVMISD 365
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 127/339 (37%), Gaps = 58/339 (17%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+ L P +++ ++ G + A + S G P T L R ++G
Sbjct: 221 EMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQG 280
Query: 154 LATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
G E+++ M + + +L+ + R+ +E+ + K GL+ YD
Sbjct: 281 KWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYD 340
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+IA CK G A+E+ M + G + ++N +L+C + A + FE + G
Sbjct: 341 PLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKL--G 398
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED-HKRLQPNVKTYALLVECFT 331
E P+ +YN + A R LGM++E K + P+ TY L+ C
Sbjct: 399 EVGCSPNASSYNSMFSALWSTGHKVRA------LGMILEMLDKGVDPDGITYNSLISC-- 450
Query: 332 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI---IELLEALEA 388
LCR+G + IELL +E
Sbjct: 451 -----------------------------------------LCRDGMVDEAIELLVDMEM 469
Query: 389 MAKDNQP--VPPRAMILSRKYRTLVSSWIEPLQEEAELG 425
+ + +P V ++L + VS IE L + G
Sbjct: 470 ESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKG 508
>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic [Vitis vinifera]
Length = 701
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 11/251 (4%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G P ++ ++ AY G+ + A+ R + R T L R++G G
Sbjct: 241 GCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGC 300
Query: 159 LEILAAMEKINYDIRQAWLI---LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
L + M+ + ++ +I L++ + R K A ++ GL+ + Y ++
Sbjct: 301 LNVYEEMKALG--VKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALL 358
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
+A +AL + EM+ G + +N LL+ A G E A A FE+M+ +
Sbjct: 359 RAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNC 418
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
M PD+ T++ +I Y+ + +V + +L M+E +PN+ L++C+ K
Sbjct: 419 M-PDSWTFSSLITIYSCS---GKVSEAEAMLNAMLE--AGFEPNIFVLTSLIQCYGKANR 472
Query: 336 VTEAIRHFRAL 346
E +R F L
Sbjct: 473 TDEVVRTFDRL 483
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 786 GGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAA 845
G P+ G A ++RA RA L + ++ G LY+ ++++C D+G + A
Sbjct: 346 GLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEA 405
Query: 846 VAIVADMETTGIAVPDQ-TLDRVIT 869
AI DM+++G +PD T +IT
Sbjct: 406 AAIFEDMKSSGNCMPDSWTFSSLIT 430
>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
Length = 556
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 14/213 (6%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ LV++ + KV+ G + ++I +CKAG + ALE ++
Sbjct: 33 LLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFS 92
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ FN L+ G P+ A FENME + PD TYN VI ++ + ++
Sbjct: 93 VAPDVYIFNFLIHGLFKDGNPDQAVKLFENME--SSRVNPDIFTYNTVISGLCKSGNLEK 150
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVEC-FTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+ ELL M+ + P++ TY L+ K V EA+ ++ V+
Sbjct: 151 AR---ELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVIT 207
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
+ ALC GR++E E L+ M+
Sbjct: 208 YNS--------IIHALCVAGRVVEAAEILKTMS 232
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 20/249 (8%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R V D++ +G SP +F L+ G A+ L+ V P L
Sbjct: 45 RTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLI 104
Query: 147 RLFGSKGLATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVF---LRGAK 201
G + +++ ME ++N DI + ++ L ++ LE A ++ +R +
Sbjct: 105 HGLFKDGNPDQAVKLFENMESSRVNPDIF-TYNTVISGLCKSGNLEKARELLEEMIR--R 161
Query: 202 GGLRATDEI-YDLMI-AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
GG A D + Y+ +I A CK GD ALEI M+ AG +N ++ G
Sbjct: 162 GGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRV 221
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
A + M PD T+N ++ + +A R +V E + + + P+
Sbjct: 222 VEAAEILKTMS-----CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMC-----RENILPD 271
Query: 320 VKTYALLVE 328
V TY +LV
Sbjct: 272 VITYTILVN 280
>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 874
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 145/359 (40%), Gaps = 27/359 (7%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM+ G++P +F+ L+ A + + A G +P T L R + G
Sbjct: 137 DMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAG 196
Query: 154 LATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
L KGLE+L AME + + +V R +D+ K+ + + GL ++
Sbjct: 197 LTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFN 256
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMA----TTFHFNHLLSCQATCGIPEVAFATFEN 268
I+ CK G +A I +ME + + +N +L G+ E A FE+
Sbjct: 257 SRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFES 316
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+ +D ++YN +Q R + + V L M + K + P++ +Y +L++
Sbjct: 317 IRENDDL--ASLQSYNIWLQGLVRHGKFIEAETV---LKQMTD--KGIGPSIYSYNILMD 369
Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 388
K +++A + L G V + +G L C G++ L+
Sbjct: 370 GLCKLGMLSDA-KTIVGLMKRNG---VCPDAVTYG----CLLHGYCSVGKVDAAKSLLQE 421
Query: 389 MAKDNQPVPPRAMILSRKYRTL-----VSSWIEPLQEEAELGYEIDYIARYISEGGLTG 442
M ++N P A + +L +S E L++ E GY +D + I GL G
Sbjct: 422 MMRNN--CLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCG 478
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 86/212 (40%), Gaps = 18/212 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L + +A +F L+ Y++ I CK G S+A + +ME G
Sbjct: 530 LLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKG 589
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYD 297
+ +N L+ GI F M E E + P+ TYN IQ E
Sbjct: 590 CHKSLETYNSLI---LGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGE--- 643
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+V+D LL M++ K + PNV ++ L+E F K A F + G + L+
Sbjct: 644 KVEDATNLLDEMMQ--KNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLY 701
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
SL L G++++ E LEA+
Sbjct: 702 ---------SLMFNELLAAGQLLKATELLEAV 724
>gi|297839813|ref|XP_002887788.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
gi|297333629|gb|EFH64047.1| EMB2217 [Arabidopsis lyrata subsp. lyrata]
Length = 832
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 119/272 (43%), Gaps = 11/272 (4%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSF--HGLVVAYTLNGDH-EGAMHSLKRELSAGVRP 137
+ RD + + +M+ S G SF + V+ Y + E A K+ +G +
Sbjct: 213 QGRDFVGIQSLFEEMVQDSSSHGDLSFGAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKI 272
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVF 196
+T L LF +KGL K EI +MEK + + + +++ L ++ L+ A K+F
Sbjct: 273 DTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLF 332
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ + LR + ++ ++ KAG ++++ EM+ G + F L+ A
Sbjct: 333 QQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKA 392
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G + A ++ M+ + +P+ Y +I+++ ++ + V + + +
Sbjct: 393 GKLDTALRLWDEMK--KSGFRPNFGLYTMIIESHAKSGKLEVAMSVFKDM-----EKAGF 445
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
P TY+ L+E V A++ + ++ N
Sbjct: 446 LPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTN 477
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 7/191 (3%)
Query: 67 GLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHS 126
GL + +E HA++ V DM AG P P ++ L+ + +G + AM
Sbjct: 415 GLYTMIIES---HAKSGKLEVAMSVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 471
Query: 127 LKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRN 186
+AG+RP + I+L L +K L +IL M+ + Y + ++ +++
Sbjct: 472 YNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYIKD 531
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM-EAAGRMATTFH 245
++ A K G++ + I + K G + +A + + +AG++ +
Sbjct: 532 ASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLY 591
Query: 246 ---FNHLLSCQ 253
HL+ CQ
Sbjct: 592 TSILAHLVRCQ 602
>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 142/336 (42%), Gaps = 41/336 (12%)
Query: 71 IFMEELMQHARNRDAPRVN---DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSL 127
+F + HA A RV+ D+ M+ GL P +++ L+ A+ G E A +
Sbjct: 170 LFTYHSVMHAFG-SAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFV 228
Query: 128 KRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRN 186
+ S + +L++ G KG +E+ M+ + + IL+E L
Sbjct: 229 GKSRSFTNEVTYNSLLSS---LGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWA 285
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAE---DC--KAGDHSNALEIAYEMEAAGRMA 241
+ED +++L + D YD++ DC KAG A E+ +M+ G A
Sbjct: 286 GRVEDVWQLYLE-----MVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNA 340
Query: 242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
T +N L++ G + A A ME E+ P+ TYN +I SY + +
Sbjct: 341 DTVTYNILINGLGRAGKLDAAGALLLEME--ENGCAPNIITYNTLI------SSYGKWSN 392
Query: 302 VAELLGMMVEDHKR-LQPNVKTYALLVECFTKYCAVTEAIRHFRALQ---------NYEG 351
++ + +E +R + PNV +Y+ L+E F K AI FR ++ Y
Sbjct: 393 LSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNL 452
Query: 352 GTKVLHNEGNFGDPLSLYLR----ALCREGRIIELL 383
L G FG + YLR A C+ G++ + L
Sbjct: 453 LIDCLIRAGRFGAAME-YLREMRDAGCQMGKVTKSL 487
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 34/252 (13%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
F+ L+ Y E A+ +L G RP T ++ ++F G GL + M
Sbjct: 33 FNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQML 92
Query: 167 KINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
K + + IL++ L + +E+A VF K + Y ++I G
Sbjct: 93 KAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRID 152
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
+++ M A G F ++ ++ + G + A F+ M + ++PD TYN
Sbjct: 153 AVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMV--QKGLQPDAVTYNI 210
Query: 286 VIQAYTRAESYDR-----------------------------VQDVAELLGMMVEDHKRL 316
+I A+ + +R +Q + EL G M K L
Sbjct: 211 LIDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQM--KAKGL 268
Query: 317 QPNVKTYALLVE 328
N TYA+L+E
Sbjct: 269 VSNELTYAILIE 280
>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 9/254 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G SP SF+ + +G+ + L ++ I + + F G
Sbjct: 64 MVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFWITI-KAFCENGN 122
Query: 155 ATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+KG E+LA ME + + IL+E RN ++ A +F R GL A IY +
Sbjct: 123 VSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTI 182
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
MI K G + E+ +M+ G + + +N L++ G +AF F+ E +
Sbjct: 183 MINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFD--EISK 240
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
+ + TYN +I R +V LL M H + P +T+ +L++
Sbjct: 241 RGVACNAVTYNILIGGLCRK---GQVSKAEGLLERMKRAH--INPTTRTFNMLMDGLCNT 295
Query: 334 CAVTEAIRHFRALQ 347
+ +A+ + L+
Sbjct: 296 GQLDKALSYLEKLK 309
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 142/348 (40%), Gaps = 22/348 (6%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
N + + +++ M G+SP + L+ A NGD + A R G+
Sbjct: 118 CENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQ 177
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLR 198
+ F KG G E+ M+ + + L+ E R+ L A KVF
Sbjct: 178 YIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDE 237
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+K G+ Y+++I C+ G S A + M+ A TT FN L+ G
Sbjct: 238 ISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQ 297
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ A + E ++ + P TYN +I +++ + V ++ + ED + + P
Sbjct: 298 LDKALSYLEKLKLIG--LCPTLVTYNILISGFSKVGNSSVVSELVREM----ED-RGISP 350
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
+ TY +L+ F + + +A F ++ ++ ++ +G + + LC +G
Sbjct: 351 SKVTYTILMNTFVRSDDIEKAYEMFHLMKR----IGLVPDQHTYG----VLIHGLCIKGN 402
Query: 379 IIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGY 426
++E + ++M + + P +I Y T+++ + + L +
Sbjct: 403 MVEASKLYKSMVE--MHLQPNDVI----YNTMINGYCKECNSYKALKF 444
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 137/344 (39%), Gaps = 28/344 (8%)
Query: 63 AAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEG 122
AA Q + I + + +D ++ M G+ P +++ L+ Y +G
Sbjct: 174 AANQYIYTIMINGFFKKGYKKDGF---ELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSL 230
Query: 123 AMHSL----KRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWL 177
A KR ++ + + L R KG +K +L M++ + + + +
Sbjct: 231 AFKVFDEISKRGVACNAVTYNILIGGLCR----KGQVSKAEGLLERMKRAHINPTTRTFN 286
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L++ L L+ A + GL T Y+++I+ K G+ S E+ EME
Sbjct: 287 MLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDR 346
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G + + L++ E A+ F M+ + PD TY +I
Sbjct: 347 GISPSKVTYTILMNTFVRSDDIEKAYEMFHLMK--RIGLVPDQHTYGVLIHGLCIK---G 401
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+ + ++L MVE H LQPN Y ++ + K C +A++ + V
Sbjct: 402 NMVEASKLYKSMVEMH--LQPNDVIYNTMINGYCKECNSYKALKFLEEMVK----NGVTP 455
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM 401
N ++ + + LC++G+ IE L+ M + PP ++
Sbjct: 456 NVASYISTIQI----LCKDGKSIEAKRLLKEMTEAGLK-PPESL 494
>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 696
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 103/224 (45%), Gaps = 8/224 (3%)
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
+++ ++ GD AM L S G+ P TL+A+ G+ G + + + +
Sbjct: 263 IILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENG 322
Query: 170 YDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228
+ R +A+ L++ V+ L+DA V K G++ ++ Y L+I AG +A
Sbjct: 323 SEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESAR 382
Query: 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288
+ EMEA+ ++ ++ +L+ G + +F ++M+ + ++PD YN +I
Sbjct: 383 IVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMK--SNGVQPDRHFYNVMID 440
Query: 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ + D +A M+ E ++P+ T+ L+ C K
Sbjct: 441 TFGKYNCLDHA--MATFERMLSEG---IRPDTVTWNTLINCHCK 479
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 97/248 (39%), Gaps = 34/248 (13%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ DM + G+ P ++ ++ + + AM + +R LS G+RP T L
Sbjct: 419 VLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHC 478
Query: 151 SKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G E+ M++ Y + I++ + + E + + GL
Sbjct: 479 KSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSI 538
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y ++ K+G S+A+E +++ G T+ +N L++ A G+ E+A F M
Sbjct: 539 TYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLM 598
Query: 270 E-----------------YGED-----------YMK-----PDTETYNCVIQAYTRAESY 296
+GED YMK PD TY +++A R E +
Sbjct: 599 TTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKF 658
Query: 297 DRVQDVAE 304
+V V E
Sbjct: 659 QKVPAVYE 666
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 122/305 (40%), Gaps = 18/305 (5%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M AG+ P +++ L+ AY G E A LK ++ V P + +
Sbjct: 349 VVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYR 408
Query: 151 SKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
KG K ++L M+ + D R + ++++ + L+ A F R G+R
Sbjct: 409 DKGEWQKSFQVLKDMKSNGVQPD-RHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDT 467
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
++ +I CK+G H+ A E+ EM+ G +N +++ E
Sbjct: 468 VTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSK 527
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
M+ + P++ TY ++ Y ++ R D E L ++ +P Y L+
Sbjct: 528 MQ--SQGLLPNSITYTTLVDVYGKS---GRFSDAIECLEVL--KSTGFKPTSTMYNALIN 580
Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 388
+ + A+ FR L EG T L L+ + A + R E L+
Sbjct: 581 AYAQRGLSELAVNAFR-LMTTEGLTPSLL-------ALNSLINAFGEDRRDAEAFAVLQY 632
Query: 389 MAKDN 393
M ++N
Sbjct: 633 MKENN 637
>gi|242053311|ref|XP_002455801.1| hypothetical protein SORBIDRAFT_03g025430 [Sorghum bicolor]
gi|241927776|gb|EES00921.1| hypothetical protein SORBIDRAFT_03g025430 [Sorghum bicolor]
Length = 642
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 89/199 (44%), Gaps = 3/199 (1%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G P + L+ AY+ N D+E A +K S+G+ P L L +++ GL K
Sbjct: 250 GHCPNLFHYSSLLNAYSENSDYEKAELLMKDLRSSGLTPNKVILTTLLKVYSKGGLFEKA 309
Query: 159 LEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+L +E + + IL++ LV+ +++A +F + G+++ + +MI+
Sbjct: 310 KELLTELEASGFAQDEMPYCILIDGLVKGGKIQEAKILFNEMKEKGVKSDGYAFSIMISA 369
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
+ G H + ++A E E+ N L + E + M+ E +
Sbjct: 370 LHRGGHHEESKQLAKEFESENASYDLVMLNTSLRTYCSTNDMESVMRMLKKMD--ELNIS 427
Query: 278 PDTETYNCVIQAYTRAESY 296
PD T+N +I+ + ++ Y
Sbjct: 428 PDNITFNTLIRYFCNSKVY 446
>gi|414585491|tpg|DAA36062.1| TPA: hypothetical protein ZEAMMB73_917988 [Zea mays]
gi|414585492|tpg|DAA36063.1| TPA: hypothetical protein ZEAMMB73_917988 [Zea mays]
Length = 787
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 111/259 (42%), Gaps = 13/259 (5%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI-ALARLFGSKGLATKG 158
L+ P++F+ +V A +G E A + KR R L AL L ++GLA K
Sbjct: 189 LATFPKTFNAVVSALATHGLLEPAFYCFKRLRDVSFRGLETPAYNALLSLLLTRGLAFKA 248
Query: 159 LEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVF--LRGAKGGLRATDEIYDLMI 215
E+L M + + + + V L R ++ A K+F ++ +G RA +Y +M+
Sbjct: 249 FEVLDEMATSGCALDEGTYQLAVPALARAGRIDAARKMFDEMKQREGIGRAPVGVYSVMV 308
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
KAG A+ + EM G +T ++ G + +E M G
Sbjct: 309 DVLAKAGRLDAAMGMYREMVVVGHRVSTAVSTAMVEALVRSGKLDAGMELWEEMRRGG-- 366
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
++P Y V++A R+ R+ A+L G M + P TYA LVE
Sbjct: 367 LRPSFGLYTMVVEANARS---GRLDMAAKLFGDM--EKSGFFPTPATYACLVEMHASAGQ 421
Query: 336 VTEAIRHFRALQNYEGGTK 354
V A+R + ++ N GT+
Sbjct: 422 VDAAMRLYHSMAN--SGTR 438
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 72/352 (20%), Positives = 155/352 (44%), Gaps = 35/352 (9%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
+ + L + + DA +V D +M+ G++P +++ ++ + GD E +
Sbjct: 200 VVIAGLWRSGKGSDALKVFD---EMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQM 256
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI-NYDIRQ---AWLILVEELVRN 186
L G +P ++ L A + E A M+++ +Y + + IL + L R
Sbjct: 257 LQDGRKP---NVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRT 313
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+F K G+ +++ CK G + A ++ + G + TT +
Sbjct: 314 GDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIY 373
Query: 247 NHLLSCQATCGIPEV--AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
N L++ C + ++ AF+ FE M+ +++PD TYN +I + E +D+
Sbjct: 374 NTLIN--GYCQVRDLQGAFSIFEQMK--SRHIRPDHITYNALINGLCKMEMITEAEDL-- 427
Query: 305 LLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 364
+M + + P+V+T+ L++ + + + + +Q+ + V+ +FG
Sbjct: 428 ---VMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVI----SFGS 480
Query: 365 PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
++A C+ G+I E + L+ M ++ V P A + Y +++ ++IE
Sbjct: 481 ----VVKAFCKNGKIPEAVAILDDMI--HKDVVPNAQV----YNSIIDAYIE 522
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 8/257 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
++ GL P ++ L+ Y D +GA ++ S +RP H T AL +
Sbjct: 361 LVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEM 420
Query: 155 ATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
T+ +++ MEK D + + L++ R LE V G+++ +
Sbjct: 421 ITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGS 480
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
++ CK G A+ I +M + +N ++ G E AF E M+
Sbjct: 481 VVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMK--S 538
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
+ TYN +++ + D +++ L ++ L+P+V +Y ++
Sbjct: 539 SGVSASIFTYNLLLKGLCKNSQIDEAEELIYNL-----TNQGLRPDVVSYNTIISACCNK 593
Query: 334 CAVTEAIRHFRALQNYE 350
A+ + + Y+
Sbjct: 594 GDTDRALELLQEMHKYD 610
>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
Length = 701
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 11/251 (4%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G P ++ ++ AY G+ + A+ R + R T L R++G G
Sbjct: 241 GCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGC 300
Query: 159 LEILAAMEKINYDIRQAWLI---LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
L + M+ + ++ +I L++ + R K A ++ GL+ + Y ++
Sbjct: 301 LNVYEEMKALG--VKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALL 358
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
+A +AL + EM+ G + +N LL+ A G E A A FE+M+ +
Sbjct: 359 RAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNC 418
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
M PD+ T++ +I Y+ + +V + +L M+E +PN+ L++C+ K
Sbjct: 419 M-PDSWTFSSLITIYSCS---GKVSEAEAMLNAMLE--AGFEPNIFVLTSLIQCYGKANR 472
Query: 336 VTEAIRHFRAL 346
E +R F L
Sbjct: 473 TDEVVRTFDRL 483
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 792 GDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLYDEIISLCLDLGELDAAVAIVAD 851
G A ++RA RA L + ++ G LY+ ++++C D+G + A AI D
Sbjct: 352 GTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFED 411
Query: 852 METTGIAVPDQ-TLDRVIT 869
M+++G +PD T +IT
Sbjct: 412 MKSSGNCMPDSWTFSSLIT 430
>gi|449447783|ref|XP_004141647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Cucumis sativus]
Length = 1020
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 118/282 (41%), Gaps = 37/282 (13%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GLSP ++++ + Y NG+ +GA+ +R G+ P T AL + + +
Sbjct: 386 GLSPDTKTYNIFLSLYANNGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDV 445
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
++A MEK + + + L V ++ N+ L D K+ L + + I +I
Sbjct: 446 ENVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTELSPRISAAIIDAY 505
Query: 219 CKAGDHSNALEI-AYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
+ G A I ++ + +G+ +N ++ + E AF F++M+ +
Sbjct: 506 AEKGLWFEAESIFLWKRDLSGKKMDVMEYNVMIKAYGKAELYEKAFLLFKSMKNRGTW-- 563
Query: 278 PDTETYNCVIQAYTRAE-----------------------------SYDRV---QDVAEL 305
PD TYN +IQ ++ + SY R+ D E+
Sbjct: 564 PDECTYNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSAVIASYARLGLMSDAVEV 623
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
MMV H ++PN Y +LV F + EA+++FR ++
Sbjct: 624 YDMMV--HADVEPNEILYGVLVNGFAEIGQAEEALKYFRLME 663
>gi|167999450|ref|XP_001752430.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696330|gb|EDQ82669.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 714
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 11/242 (4%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+IF + H+ + RV D++ DM A L + L+ +G+ A K
Sbjct: 196 VIFSGVIHMHSFQGNVARVKDLVADMKEAALPLSRDCYTALIRVAAKDGNITEAESVFKD 255
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME----KINYDIRQAWLILVEELVR 185
LSAG +P + I+L +G+ GL K M IN ++ QA +++ +++
Sbjct: 256 LLSAGHQPDWRSYISLIETYGAGGLPDKVQSTFDKMVAEGIHINLNVYQA---VIKAMIK 312
Query: 186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH 245
+E A + + A Y+L++ E ++ D +E+ E +
Sbjct: 313 MGSIEGALSALEKAEEKFSFALHNSYNLLM-EWYRSKDMLVDVEVVVERMKEKKCRPNLQ 371
Query: 246 -FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
+N+L+ G + A +E+M +P+ +TY +I+A++RAE ++RV+D
Sbjct: 372 AYNNLIESFILRGQLDKAEGVYEDM--NNKGFQPNLQTYCLMIEAFSRAERHERVKDCYA 429
Query: 305 LL 306
LL
Sbjct: 430 LL 431
>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 874
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 9/180 (5%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
++ L + L+DA K F+ GL+ IYD I C+ G S+A ++ +ME G
Sbjct: 530 IISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRG 589
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYD 297
T +N L+ G F + + E E + PD TYN ++
Sbjct: 590 CNKTLQTYNSLI---LGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEG---G 643
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
R+ D +L M++ K + PN+ ++ +L++ F K C + F N G + L+
Sbjct: 644 RINDAPSVLDEMLQ--KGISPNISSFRILIKAFCKACDFKASHEVFEIALNVCGHKEALY 701
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 141/355 (39%), Gaps = 33/355 (9%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM+ A +SP +F+ L+ +G E A + + G P T L R + G
Sbjct: 137 DMVLARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAG 196
Query: 154 LATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
LA+KGLE+L M + + L+ + DA K+ + + GL E ++
Sbjct: 197 LASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFN 256
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMA------TTFHFNHLLSCQATCGIPEVAFATF 266
I+ C +G A I +M+ + T+ + C+ G+ E A
Sbjct: 257 SRISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKE--GMLEEAKTLV 314
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVEDHKRLQPNVKTYAL 325
+ M+ +++ + E+YN + R V E+LG+ +E P++ +Y +
Sbjct: 315 DTMKRNANFI--NLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIE------PDIYSYNI 366
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 385
+++ K +++A R L G +L + + S L C +G++ E
Sbjct: 367 VMDGLCKNGMLSDA-RMLMGLMIRNG---ILPDTVTY----STLLHGYCSKGKVFEANNL 418
Query: 386 LEAMAKDNQPVPPRAMILSRKYRTL-----VSSWIEPLQEEAELGYEIDYIARYI 435
L M +N P + +L +S LQ+ E GY +D + I
Sbjct: 419 LHEMISNN--CSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNI 471
>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
Length = 651
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 98/240 (40%), Gaps = 9/240 (3%)
Query: 92 IYDMI-AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++D I AGL PG S++ L+ E A L L+ GV P AL +
Sbjct: 417 VFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYA 476
Query: 151 SKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G K + M+K N I A+ L++ + + A +VF + GL+
Sbjct: 477 RTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQI 536
Query: 210 IYDLMI-AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y M+ +AG A E+ ME G T +N L++ G E A
Sbjct: 537 TYCTMLDGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAK 596
Query: 269 M-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M + KPD TYN +IQ Y +A R +++ + L + +L P+ T+ L+
Sbjct: 597 MVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARL-----KLVPDATTWTALM 651
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 126/316 (39%), Gaps = 43/316 (13%)
Query: 69 RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
++I+ + +AR D V DM++AGL P ++ LV A+ G + A+ L+
Sbjct: 325 KMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLE 384
Query: 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK-------INYD---------- 171
+ + P ET ++ + G K LE+ ++ ++Y+
Sbjct: 385 NIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKAR 444
Query: 172 -IRQAWLILVEEL------------------VRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ A L+L E L R +E A VF R K L Y
Sbjct: 445 QMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYG 504
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL-SCQATCGIPEVAFATFENMEY 271
++ C +G A E+ ++ AG + +L A G E A ME
Sbjct: 505 ALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEELVSAME- 563
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVECF 330
D KPDT YN +I AY + R +D+ LL MV+ K+ +P++ TY L++ +
Sbjct: 564 -RDGTKPDTLIYNSLINAYGVS---GRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVY 619
Query: 331 TKYCAVTEAIRHFRAL 346
+ + A F+ L
Sbjct: 620 AQAGFIPRAEELFQGL 635
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 10/242 (4%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
L F L + + + D++ +M G+SP + ++ Y GD A +
Sbjct: 291 LSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWED 350
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKY 188
+SAG++P L F G K L +L +E + + +++ V+
Sbjct: 351 MVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGN 410
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
++ A +VF R GLR Y+ +++ KA NA + EM A G + + +
Sbjct: 411 IQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTA 470
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA-------YTRAESYDRVQD 301
L A G E AF F+ M+ ++ + D Y +++A + AE + ++ D
Sbjct: 471 LTEGYARTGDVEKAFGVFQRMK--KENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITD 528
Query: 302 VA 303
Sbjct: 529 AG 530
Score = 39.7 bits (91), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 17/178 (9%)
Query: 160 EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD-----EIYDLM 214
+I+ A + I+ + + + +LV+ R+ +KV R +RA+ IY +
Sbjct: 118 KIVNAFQVIDKPVLREYGLLVDFYARH-----GDKVAARATFEAMRASHIKPNVHIYTSL 172
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I +A D A+ EM + G F ++S A+ G E A FE ++ +
Sbjct: 173 IHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFE--KFKAE 230
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ P YN ++QAY +A + + V+ LL M E+ Q N+ Y ++ F +
Sbjct: 231 NLVPGGIVYNSIVQAYCQAGNMETVE---ALLAQMEEEG--FQGNLGLYTTVLNGFAE 283
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 104/255 (40%), Gaps = 8/255 (3%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM+ G+ P +F L+ A+ G A K + V P T AL + G
Sbjct: 247 DMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYG 306
Query: 154 LATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ ++ ME Y + + L+ ++K +ED K+F ++ GL A Y
Sbjct: 307 RLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYT 366
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
++I C G A E+ +M + +N LL G E A F+ M
Sbjct: 367 VLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKR 426
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
E M + TY +IQ + +V+D +L + K ++PNV TY ++ F +
Sbjct: 427 E--MDINIVTYTIIIQGMCKV---GKVEDAFDLFCSLFS--KGMKPNVITYTTMISGFCR 479
Query: 333 YCAVTEAIRHFRALQ 347
+ EA F+ ++
Sbjct: 480 RGFIHEADALFKKMK 494
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 122/317 (38%), Gaps = 22/317 (6%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+NR ++ M G+ P +++ LV G A L+ + G++P
Sbjct: 198 CKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNV 257
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLR 198
T AL F G + E+ M +++ Y + L+ L L++A ++F
Sbjct: 258 ITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYL 317
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G + Y +I CK+ + +I YEM G +A T + L+ G
Sbjct: 318 MESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGR 377
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--- 315
P+VA F M G PD TYN ++ ++ +M+ + R
Sbjct: 378 PDVAQEVFNQM--GSRRAPPDIRTYNVLLDGLCYNGYVEK--------ALMIFKYMRKRE 427
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 375
+ N+ TY ++++ K V +A F +L + G K N + +S CR
Sbjct: 428 MDINIVTYTIIIQGMCKVGKVEDAFDLFCSL--FSKGMK--PNVITYTTMIS----GFCR 479
Query: 376 EGRIIELLEALEAMAKD 392
G I E + M +D
Sbjct: 480 RGFIHEADALFKKMKED 496
>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 108/258 (41%), Gaps = 8/258 (3%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+V++++ +M + G P S++ L+ A+ +G + AM ++ AG P T L
Sbjct: 63 KVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILL 122
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
L+G G ++ M+ N + A + IL+ Y ++ +F + +
Sbjct: 123 NLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVE 182
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
E Y+ +I K G H +A +I M G + ++ + ++ + E A
Sbjct: 183 PNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVA 242
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
F M E KP ETYN +IQ + + Y + + +G + N T+
Sbjct: 243 FNTMN--EVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMG-----QSGVARNRDTFNG 295
Query: 326 LVECFTKYCAVTEAIRHF 343
++E F + EAI+ +
Sbjct: 296 VIEAFRQGGQFEEAIKAY 313
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 8/179 (4%)
Query: 166 EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
E I DI + L+ R ++A VF +GG+ Y ++ K
Sbjct: 4 EGIQADI-VTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLE 62
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
E+ EME+ G +N LL A G + A F M+ G + P+ TY+
Sbjct: 63 KVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQ-GAGCV-PNAATYSI 120
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 344
++ Y R YD V+D+ L M V + +PN TY +L+ F + E + F
Sbjct: 121 LLNLYGRHGRYDDVRDL--FLEMKVSN---TEPNAATYNILINVFGEGGYFKEVVTLFH 174
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/236 (18%), Positives = 91/236 (38%), Gaps = 15/236 (6%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V + +DM+ + P ++ GL+ A G HE A L GV P + +
Sbjct: 169 VVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIE 228
Query: 148 LFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+G L + L M ++ + + L++ + +++ + L+ + G+
Sbjct: 229 AYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVAR 288
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
+ ++ +I + G A++ EME A +LS G+ E + F
Sbjct: 289 NRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQF 348
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYD------------RVQDVAELLGMMV 310
E + P Y ++ Y +A+ +D RV ++ +++G M+
Sbjct: 349 G--EIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMI 402
>gi|449447683|ref|XP_004141597.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29290-like [Cucumis sativus]
Length = 600
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 5/213 (2%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D M+ PG + ++ A + G + A+ + L G++P + AL
Sbjct: 311 DTYVKMVQNSFKPGNDTMQAIIGASSKEGKWDFALRVFQDMLKCGLQPNSVSFNALINAL 370
Query: 150 GSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G T + M+ + + D+ W L+ L + DA +F + ++
Sbjct: 371 GKAKEVTLAFSVYNVMKSMGHSPDV-YTWNALLGALYKANRYSDAIHLFEFVKREKVQLN 429
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
IY+ ++ K G A++I +EME +G +T +N +++ PE+A +E
Sbjct: 430 IHIYNTILMSCSKLGLWERAVQILWEMEVSGLSISTSSYNIVMTACEMARKPEIALQVYE 489
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
M + + PDT T+ +I+ +D V+
Sbjct: 490 RMVHQKH--TPDTFTHLSLIRCCIWGSLWDEVE 520
>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 115/285 (40%), Gaps = 40/285 (14%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ D RV ++ +M G P +++ L+ L G + A+ L+R +S+ P
Sbjct: 268 CKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPND 327
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T L + AT + +L++ME+ Y + Q + +L+ L + E+A ++ +
Sbjct: 328 VTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRK 387
Query: 199 GAKGGLRAT--------------------DEIYDLMIAEDC---------------KAGD 223
A+ G + EI + MIA C K G
Sbjct: 388 MAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGL 447
Query: 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY 283
A+++ EM+ G F ++ L+ CG+ V A + +KPDT Y
Sbjct: 448 CEEAVQVWKEMDKTGCSRNKFCYSVLI--DGLCGVGRVKEAMMVWSKMLTIGIKPDTVAY 505
Query: 284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+ +I+ S D + M+ ++ + QP+V TY +L++
Sbjct: 506 SSIIKGLCGIGSMDAALKLYH--EMLCQEEPKSQPDVVTYNILLD 548
>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
Length = 1098
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 147/356 (41%), Gaps = 51/356 (14%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
F + H + +VND++++M GLSP ++ L+ + GD A +
Sbjct: 596 FFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEM 655
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE 190
+ G+ P +L F KG +D +A L+L + LV +
Sbjct: 656 IEKGLVPNLFICSSLVSCFYRKG---------------KFD--EANLVL-QNLVGTDMIP 697
Query: 191 DAN-------KV--FLRGAKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
D + KV F+ GG + +I ++++I CK G +A + +++ G +
Sbjct: 698 DISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFV 757
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRV 299
A F ++ L+ + G +VAF + M G + P+ TYN +I ++ R
Sbjct: 758 ADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVG---LTPNIVTYNSLIYGLCKSGELSRA 814
Query: 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 359
+ + L K + PN TY L++ K +TEA + + EG +
Sbjct: 815 VSLFKKLWT-----KGISPNAITYNTLIDKHCKDGYITEAFK-LKQRMIEEGIHPTVFT- 867
Query: 360 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
S+ + LC +G + E ++ L+ M ++N V P + Y TL+ ++
Sbjct: 868 ------YSILINGLCTQGYMEEAIKLLDQMIENN--VDPNYV----TYWTLIQGYV 911
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
Query: 166 EKINYDIRQAWLILVEELVR----NKY-----LEDANKVFLRGAKGGLRATDEIYDLMIA 216
E + +IR+ ++V+E V N Y +EDA ++ L+ +Y++MI
Sbjct: 333 EGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMIN 392
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
CK G A I +EM G T+ +N L+ G+ AF T+ M +
Sbjct: 393 GYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTML--RNGF 450
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
T TYN +++ + S D D L +M++ K + PN + + L++ F K
Sbjct: 451 AATTLTYNALLKGFCSLGSID---DALRLWFLMLK--KGIAPNEISCSTLLDGFFK 501
>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 20/250 (8%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+++ +M P +++ LV AY G H+ + S GV P T + +
Sbjct: 364 NILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAY 423
Query: 150 GSKGLATKGLEILAAMEKI----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
G G A K LE+ M+++ N L+L+ + R+ ED K+ G
Sbjct: 424 GKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRS---EDMIKILCDMKLNGCP 480
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
++ M+A + G ++ EM+ G FN L+S CG EV A
Sbjct: 481 PDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCG-SEVDVAK 539
Query: 266 FENMEYGEDY---MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
YGE P TYN ++ A R ++ + V +L M K +PN +
Sbjct: 540 M----YGEMVAAGFTPCITTYNALLNALARRGNWKAAESV--VLDM---RKKGFKPNETS 590
Query: 323 YALLVECFTK 332
Y+LL+ C++K
Sbjct: 591 YSLLLHCYSK 600
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 9/213 (4%)
Query: 113 AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA-TKGLEILAAMEKINYD 171
AY G ++ A+ ++ G+ P T + ++G G A + LE+L M +
Sbjct: 246 AYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLE 305
Query: 172 IRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEI 230
+ ++ R L++A + F G + Y+ M+ KAG ++ AL I
Sbjct: 306 FDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNI 365
Query: 231 AYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 290
EME +N L++ G + A + M + P+ TY VI AY
Sbjct: 366 LKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTM--ASKGVMPNAITYTTVINAY 423
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+A D+ E+ G M E PNV TY
Sbjct: 424 GKAGDADK---ALEVFGQMKE--LGCVPNVCTY 451
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 68/355 (19%), Positives = 131/355 (36%), Gaps = 37/355 (10%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ DM G P +++ ++ G + L+ + G P ET L +G
Sbjct: 470 ILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYG 529
Query: 151 SKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G ++ M + + L+ L R + A V L K G + +
Sbjct: 530 RCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNET 589
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC----GIPEVAFAT 265
Y L++ KAG+ ++ E+ + L+ C G+ E AF
Sbjct: 590 SYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGM-ERAFHQ 648
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+N Y K D N ++ + R + ++ ++ +++ + LQPN+ TY
Sbjct: 649 LQNNGY-----KLDMVVINSMLSMFVRNQKLEKAHEMLDVIHV-----SGLQPNLVTYNS 698
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 385
L++ + + +A + +QN V+ + ++ C++G + E +
Sbjct: 699 LIDLYARVGDCWKAEEMLKDIQNSGISPDVV--------SYNTVIKGFCKKGLVQEAIRI 750
Query: 386 LEAMAKDN-QPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGG 439
L M + QP P + T +S + L E D + RY+ E G
Sbjct: 751 LSEMTANGVQPCPI-------TFNTFMSCY-----AGNGLFAEADEVIRYMIEHG 793
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 127/315 (40%), Gaps = 29/315 (9%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ +M++ G+SP ++ L+ + + G + A+ + + ++P T L F
Sbjct: 246 DLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAF 305
Query: 150 GSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
G +G + M K + Y+ LV+E+ NK A +F A+G
Sbjct: 306 CKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEV--NK----AKSIFNTMAQG 359
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ + Y +MI CK A+ + EM + ++ L+ + G A
Sbjct: 360 GVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYA 419
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ M + + P+ TYN ++ A + D+ A L +D K QP++ T
Sbjct: 420 LQLVDQMH--DRGVPPNICTYNSILDALCKTHQVDK----AIALLTKFKD-KGFQPDIST 472
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL 382
Y++L++ + + +A + F L V ++ ++ C EG E
Sbjct: 473 YSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVY--------AYTIMIQGFCVEGLFNEA 524
Query: 383 LEALEAMAKDNQPVP 397
L L M +DN +P
Sbjct: 525 LALLSKM-EDNGCIP 538
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/374 (23%), Positives = 142/374 (37%), Gaps = 61/374 (16%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV+ MI G +P +F+ LV + G+ + A L ++ G+RP T AL
Sbjct: 235 DVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGL 294
Query: 150 GSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+ E+L M+ + D + L+ L + +E+A ++ R A G
Sbjct: 295 CKSQKFLEAKEVLEEMKTRGVTPDAF-TYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 353
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA--T 265
+Y +I CK+G A + EM + +N ++ C + ++A A
Sbjct: 354 VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVI--DGLCKLGKIAEAQVI 411
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAE----------------------SYDRVQDVA 303
E M+ D + PD TY+ VI +++ +Y + D
Sbjct: 412 LEQMQESGDVL-PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGL 470
Query: 304 ELLGMMVEDHKRLQ--------PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
G + E LQ PNV TY L+ K V EA R V
Sbjct: 471 CKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAER-------------V 517
Query: 356 LHNEGNFGDPLSL-----YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTL 410
+ N G P +L + LC GRI E + ++ M P A YRT+
Sbjct: 518 MEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDA----ATYRTI 573
Query: 411 VSSWIEP-LQEEAE 423
V++ + L +EAE
Sbjct: 574 VNALMSSDLVQEAE 587
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+W L++ LVR K +A +F Y+++I+ C AGD ALE+ EM
Sbjct: 79 SWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEM 138
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
++AG F +++ A G + A +M G D P+ TY +I A+ RA+
Sbjct: 139 KSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM--GCD---PNVVTYTALIAAFARAK 193
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
++++ +LL M E + PN+ TY +LV+ K V A
Sbjct: 194 ---KLEEAMKLLEEMRE--RGCPPNLVTYNVLVDALCKLSMVGAA 233
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/315 (20%), Positives = 127/315 (40%), Gaps = 31/315 (9%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+++ +M +AG +P + ++ A GD +GAM L+ S G P T AL F
Sbjct: 133 ELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLR---SMGCDPNVVTYTALIAAF 189
Query: 150 GSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+ +++L M + + Y+ +LV+ L + + A V + +G
Sbjct: 190 ARAKKLEEAMKLLEEMRERGCPPNLVTYN------VLVDALCKLSMVGAAQDVVKKMIEG 243
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G ++ ++ CK G+ +A ++ M A G ++ L+ C +
Sbjct: 244 GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALI--DGLCKSQKFL 301
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
A E + PD TY+ +I +A D++++ ++L M P+V
Sbjct: 302 EAKEVLEEMKTRGVTPDAFTYSALIHGLCKA---DKIEEAEQMLRRMAGSG--CTPDVVV 356
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL 382
Y+ ++ F K + EA + + ++ V+ + + LC+ G+I E
Sbjct: 357 YSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVV--------TYNTVIDGLCKLGKIAEA 408
Query: 383 LEALEAMAKDNQPVP 397
LE M + +P
Sbjct: 409 QVILEQMQESGDVLP 423
>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
Length = 838
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 8/243 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V ++M + P +F LV A+ G E A ++ AG+ P AL +
Sbjct: 225 VFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYS 284
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G EI + M+ + + R ++ I+V+ R EDA VF + G+ T +
Sbjct: 285 RAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMK 344
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ L+++ +AG + EI +M +G TF N +L+ G E M
Sbjct: 345 SHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAM 404
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
E G D TYN +I Y RA + R++++ L + L P+V T+ +
Sbjct: 405 EKGP--YPADISTYNILINIYGRAGFFARMEELFRSL-----PARNLIPDVVTWTSRIGA 457
Query: 330 FTK 332
+++
Sbjct: 458 YSR 460
Score = 43.1 bits (100), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ +L++ + LE A VF K G + +Y+ I K GD A+EI M+
Sbjct: 136 YALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMK 195
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+T + L++ +A F M KP+ T+ ++ A+ R
Sbjct: 196 RDRCQPSTATYTMLINLYGKASKSYMALKVFHEMR--SQKCKPNICTFTALVNAFAREGL 253
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
++ +++ E L L+P+V Y L+E +++
Sbjct: 254 CEKAEEIFEQL-----QEAGLEPDVYAYNALMEAYSR 285
Score = 41.6 bits (96), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 5/214 (2%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M G P ++ + GD + A+ +R +P T L L+G
Sbjct: 155 VFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYG 214
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+ L++ M +K +I + LV R E A ++F + + GL
Sbjct: 215 KASKSYMALKVFHEMRSQKCKPNI-CTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDV 273
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y+ ++ +AG A EI M+ G +N ++ G+ E A A FE
Sbjct: 274 YAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEV 333
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
M+ + P +++ ++ AY+RA + +++
Sbjct: 334 MK--RLGITPTMKSHMLLLSAYSRAGKVAKCEEI 365
>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like, partial [Cucumis sativus]
Length = 312
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 11/258 (4%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
+Q +++ A + D +M P +F LV A G E A ++ AG
Sbjct: 6 FVQESKSHMAQNIFD---EMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGY 62
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANK 194
P AL + G EI + M+ + + R ++ I+V+ R EDA
Sbjct: 63 EPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQA 122
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
VF + G+ T + + L+++ AG+ + +I +M +G TF N +L+
Sbjct: 123 VFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYG 182
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G F M+ G + D TYN +I Y RA +R++++ +LL K
Sbjct: 183 RLGQFGKMEDLFSTMQKGP--CRADISTYNILINVYGRAGFVERMEELFQLL-----PAK 235
Query: 315 RLQPNVKTYALLVECFTK 332
L+P+V T+ + +++
Sbjct: 236 NLEPDVVTWTSRIGAYSR 253
>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
Length = 734
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 110/253 (43%), Gaps = 21/253 (8%)
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
+V Y NG E A+ +R L GV L ++A + G+ +G ++ +EK+
Sbjct: 333 MVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLG 392
Query: 170 --YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
+D A I V+ ++ LEDA ++F R A+ A ++ M+ G A
Sbjct: 393 HRFDAPLASAI-VDMYSKSGSLEDACRIF-RSAQTKNVA---LWTTMLCSYASHGQGRMA 447
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNC 285
LEI M+A M +LS + G+ + F M EYG + P+TE YNC
Sbjct: 448 LEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYG---IVPNTEHYNC 504
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC-FTKYCAVTE-AIRHF 343
++ Y RA D+ ++ +E++K V LL C K+ + A
Sbjct: 505 MVDLYGRAGLLDKAKN-------FIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKL 557
Query: 344 RALQNYEGGTKVL 356
L+ Y+ G+ VL
Sbjct: 558 VQLEQYDAGSYVL 570
>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
Length = 397
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 4/211 (1%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M + G P ++ LV A+ G E A + AG P AL +
Sbjct: 104 VFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 163
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
GL EI + M+ + + R ++ ILV+ R EDA VF + G+ T +
Sbjct: 164 RAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMK 223
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ L++A ++G+ + E+ ++ +G TF N +L+ A G + F M
Sbjct: 224 SHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAM 283
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
E D D TYN + AY RA R++
Sbjct: 284 ERRGD---ADVGTYNVAVNAYGRAGYVGRME 311
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 14/206 (6%)
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI----NYDIRQAWLILVEELVRN 186
L A P +T L R + + G + +++ M + N + A+L + L++
Sbjct: 4 LEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYL---DGLLKA 60
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+ E A +V+ R + RA E + LMI KA +++++ EM++ G +
Sbjct: 61 RCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTY 120
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
L++ A G+ E A FE M+ +PD YN +++AY+RA Q +E+
Sbjct: 121 TALVNAFAREGLCEKAEEVFEEMQQAGH--EPDVYAYNALMEAYSRA---GLPQGASEIF 175
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTK 332
+M H +P+ +Y +LV+ + +
Sbjct: 176 SLM--QHMGCEPDRASYNILVDAYGR 199
Score = 43.5 bits (101), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 19/198 (9%)
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
KVF G + Y ++ + G A E+ EM+ AG + +N L+
Sbjct: 103 KVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAY 162
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
+ G+P+ A F M++ +PD +YN ++ AY RA ++ + V E L
Sbjct: 163 SRAGLPQGASEIFSLMQHMG--CEPDRASYNILVDAYGRAGLHEDAEAVFEEL-----KQ 215
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLR 371
+ + P +K++ LL+ + T E LH G D +L L
Sbjct: 216 RGMSPTMKSHMLLLAAHARSGNATRC----------EEVMAQLHKSGLTPDTFALNAMLN 265
Query: 372 ALCREGRIIELLEALEAM 389
A R GR+ ++ AM
Sbjct: 266 AYARAGRLDDMERLFAAM 283
>gi|356541064|ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 703
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 40/211 (18%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D M G+ P S+ L+ AY+++G HE A + + G++P ET AL F
Sbjct: 458 DAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAF 517
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G ++I M EK+ R + LV+ ++ Y ++A V + A GL T
Sbjct: 518 RRAGDTQTLMKIWKLMRREKVE-GTRVTFNTLVDGFAKHGYYKEARDVISKFANVGLHPT 576
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y++++ + G HS E+ EM A
Sbjct: 577 VMTYNMLMNAYARGGRHSKLPELLEEMAAHN----------------------------- 607
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+KPD+ TY+ +I A+ R + +
Sbjct: 608 --------LKPDSVTYSTMIYAFLRVRDFSQ 630
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 145/361 (40%), Gaps = 66/361 (18%)
Query: 76 LMQHARNRDAPRV------NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
L+ AR DA +V ++V+ D + + ++V L + A ++
Sbjct: 270 LLSSARYEDAWKVYESMEADNVLPDHVTCSIM--------VIVMRKLGHSAKDAWQFFEK 321
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKY 188
GV+ E L AL + F +GL ++ L IL+ +EK + L++ ++
Sbjct: 322 MNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSELEKKGVSSNTIVYNTLMDAYCKSNR 381
Query: 189 LEDANKVFLRGAKGGLRATD----------------EIYDLMIAEDCKAGDHSNALEIAY 232
+E+A +F+ G++ T+ EI + ++AE + G NA
Sbjct: 382 VEEAEGLFVEMKTKGIKPTEATFNILMYAYSRKMQPEIVEKLMAEMQETGLKPNAKSYTC 441
Query: 233 EMEAAGR------MA--------------TTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+ A G+ MA T+ + L+ + G E A+A FENM+
Sbjct: 442 IISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQ-- 499
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ +KP ETY ++ A+ RA + + +L+ ++++ T+ LV+ F K
Sbjct: 500 REGIKPSIETYTALLDAFRRAGDTQTLMKIWKLM-----RREKVEGTRVTFNTLVDGFAK 554
Query: 333 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392
+ EA N V+ ++ + A R GR +L E LE MA
Sbjct: 555 HGYYKEARDVISKFANVGLHPTVM--------TYNMLMNAYARGGRHSKLPELLEEMAAH 606
Query: 393 N 393
N
Sbjct: 607 N 607
>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
Length = 738
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 4/211 (1%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M + G P ++ LV A+ G E A + AG P AL +
Sbjct: 445 VFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 504
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
GL EI + M+ + + R ++ ILV+ R EDA VF + G+ T +
Sbjct: 505 RAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMK 564
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ L++A ++G+ + E+ ++ +G TF N +L+ A G + M
Sbjct: 565 SHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAM 624
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
E D D TYN + AY RA R++
Sbjct: 625 ERRGD---ADVGTYNVAVNAYGRAGYVGRME 652
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 106/238 (44%), Gaps = 21/238 (8%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRE-------LSAGVRPLHETLIALARLFGSKGLATKG 158
SF ++ Y L + G L + L A P +T L R + + G +
Sbjct: 313 SFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRA 372
Query: 159 LEILAAMEKI----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+++ M + N + A+L + L++ + E A +V+ R + RA E + LM
Sbjct: 373 EGVISEMREHGIPPNATVYNAYL---DGLLKARCTEKAVEVYQRMKRERCRANTETFTLM 429
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I KA +++++ EM++ G + L++ A G+ E A FE M+
Sbjct: 430 INVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH 489
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+PD YN +++AY+RA Q +E+ +M H +P+ +Y +LV+ + +
Sbjct: 490 --EPDVYAYNALMEAYSRA---GLPQGASEIFSLM--QHMGCEPDRASYNILVDAYGR 540
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 19/198 (9%)
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
KVF G + Y ++ + G A E+ EM+ AG + +N L+
Sbjct: 444 KVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAY 503
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
+ G+P+ A F M++ +PD +YN ++ AY RA ++ + V E L
Sbjct: 504 SRAGLPQGASEIFSLMQHMG--CEPDRASYNILVDAYGRAGLHEDAEAVFEEL-----KQ 556
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLR 371
+ + P +K++ LL+ + T E LH G D +L L
Sbjct: 557 RGMSPTMKSHMLLLAAHARSGNATRC----------EEVMAQLHKSGLTPDTFALNAMLN 606
Query: 372 ALCREGRIIELLEALEAM 389
A R GR+ ++ L AM
Sbjct: 607 AYARAGRLDDMERLLAAM 624
>gi|449525162|ref|XP_004169587.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g73710-like [Cucumis sativus]
Length = 1026
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 118/282 (41%), Gaps = 37/282 (13%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GLSP ++++ + Y +G+ +GA+ +R G+ P T AL + + +
Sbjct: 386 GLSPDTKTYNIFLSLYANDGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDV 445
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
++A MEK + + + L V ++ N+ L D K+ L + + I +I
Sbjct: 446 ENVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTELSPRISAAIIDAY 505
Query: 219 CKAGDHSNALEI-AYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
+ G A I ++ + AG+ +N ++ + E AF F++M+ +
Sbjct: 506 AEKGLWFEAESIFLWKRDLAGKKXDVMEYNVMIKAYGKAELYEKAFLLFKSMKNRGTW-- 563
Query: 278 PDTETYNCVIQAYTRAE-----------------------------SYDRV---QDVAEL 305
PD TYN +IQ ++ + SY R+ D E+
Sbjct: 564 PDECTYNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSAVIASYARLGLMSDAVEV 623
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
MMV H ++PN Y +LV F + EA+++FR ++
Sbjct: 624 YDMMV--HADVEPNEILYGVLVNGFAEIGQAEEALKYFRLME 663
>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1006; Flags: Precursor
gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 723
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 11/174 (6%)
Query: 160 EILAAMEKIN-YDIRQAWLILVEELVR-NKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+ AM+KIN Y IL+ L + + ++ ++F + ++ G++ + +++ ++
Sbjct: 294 EVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKS 353
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
C G AL I EME G + T +N L+ E F M + +K
Sbjct: 354 FCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMR--DKGLK 411
Query: 278 PDTETYNCVIQAYTRAESYDRVQ-DVAELLGMMVEDHKRLQPNVKTYALLVECF 330
P TYN ++ AY R R+Q D+ E L +ED L+PNVK+Y L+ +
Sbjct: 412 PSAATYNILMDAYAR-----RMQPDIVETLLREMEDLG-LEPNVKSYTCLISAY 459
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 44/213 (20%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D M GL P S+ L+ AY+++G HE A S + G++P ET ++ F
Sbjct: 471 DAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAF 530
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G K +EI W +++ E ++ G R T
Sbjct: 531 RRSGDTGKLMEI--------------WKLMLREKIK-----------------GTRIT-- 557
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG----IPEVAFAT 265
Y+ ++ K G + A ++ E G + +N L++ A G +P++
Sbjct: 558 -YNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLL--- 613
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
E +KPD+ TY+ +I A+ R + R
Sbjct: 614 ---KEMAALNLKPDSITYSTMIYAFVRVRDFKR 643
>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 8/202 (3%)
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
+ F G +KG E+LA ME + + IL+E RN ++ A +F R GL
Sbjct: 115 KAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLA 174
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
A IY +MI K G + E+ +M+ G + + +N L++ G +AF
Sbjct: 175 ANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKV 234
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
F+ E + + + TYN +I R +V LL M H + P +T+ +
Sbjct: 235 FD--EISKRGVACNAVTYNILIGGLCRK---GQVSKAEGLLERMKRAH--INPTTRTFNM 287
Query: 326 LVECFTKYCAVTEAIRHFRALQ 347
L++ + +A+ + L+
Sbjct: 288 LMDGLCNTGQLDKALSYLEKLK 309
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 142/348 (40%), Gaps = 22/348 (6%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
N + + +++ M G+SP + L+ A NGD + A R G+
Sbjct: 118 CENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQ 177
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLR 198
+ F KG G E+ M+ + + L+ E R+ L A KVF
Sbjct: 178 YIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDE 237
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+K G+ Y+++I C+ G S A + M+ A TT FN L+ G
Sbjct: 238 ISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQ 297
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ A + E ++ + P TYN +I +++ + V ++ + ED + + P
Sbjct: 298 LDKALSYLEKLKLIG--LCPTLVTYNILISGFSKVGNSSVVSELVREM----ED-RGISP 350
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
+ TY +L+ F + + +A F ++ ++ ++ +G + + LC +G
Sbjct: 351 SKVTYTILMNTFVRSDDIEKAYEMFHLMKR----IGLVPDQHTYG----VLIHGLCIKGN 402
Query: 379 IIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGY 426
++E + ++M + + P +I Y T+++ + + L +
Sbjct: 403 MVEASKLYKSMVE--MHLQPNDVI----YNTMINGYCKECNSYKALKF 444
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 137/344 (39%), Gaps = 28/344 (8%)
Query: 63 AAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEG 122
AA Q + I + + +D ++ M G+ P +++ L+ Y +G
Sbjct: 174 AANQYIYTIMINGFFKKGYKKDGF---ELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSL 230
Query: 123 AMHSL----KRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWL 177
A KR ++ + + L R KG +K +L M++ + + + +
Sbjct: 231 AFKVFDEISKRGVACNAVTYNILIGGLCR----KGQVSKAEGLLERMKRAHINPTTRTFN 286
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L++ L L+ A + GL T Y+++I+ K G+ S E+ EME
Sbjct: 287 MLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDR 346
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G + + L++ E A+ F M+ + PD TY +I
Sbjct: 347 GISPSKVTYTILMNTFVRSDDIEKAYEMFHLMK--RIGLVPDQHTYGVLIHGLCIK---G 401
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+ + ++L MVE H LQPN Y ++ + K C +A++ + V
Sbjct: 402 NMVEASKLYKSMVEMH--LQPNDVIYNTMINGYCKECNSYKALKFLEEMVK----NGVTP 455
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM 401
N ++ + + LC++G+ IE L+ M + PP ++
Sbjct: 456 NVASYISTIQI----LCKDGKSIEAKRLLKEMTEAGLK-PPESL 494
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 112/291 (38%), Gaps = 45/291 (15%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
++ AG+ P R F+ L+ +G A + L GV+P T++ L
Sbjct: 105 LLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQP---TVVTFNTLMSGMCK 161
Query: 155 AT-----KGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
A+ L L A I D+ + ++ L + ++DA ++F + GL
Sbjct: 162 ASDLNNANALRGLMAKAGIAPDV-YTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTV 220
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ +I CK GD + LE+ +EM G A +N L++ C + ++ A
Sbjct: 221 VLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVN--GFCRVRDMKAANDIVE 278
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYD-------------------------------- 297
E +D +KPD TY +I + D
Sbjct: 279 EMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAG 338
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
R D +L M+E LQP+ TY ++++ F K V +H + +QN
Sbjct: 339 RSVDAERILCEMME--AGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQN 387
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 119/304 (39%), Gaps = 24/304 (7%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M AG++P ++ + G + AM + G+ P L L +G
Sbjct: 175 MAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGD 234
Query: 155 ATKGLEIL--AAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
T GLE+ A + D+ A+ LV R + ++ AN + K GL+ Y
Sbjct: 235 VTAGLELRWEMATRGVKADL-VAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYT 293
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP-EVAFATFENMEY 271
+I CK G+ A+E+ EM G + L+S + G + E ME
Sbjct: 294 TLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEA 353
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVECF 330
G ++PD TY VI A+ + DV + E +K P + TY +++ F
Sbjct: 354 G---LQPDNTTYTMVIDAFCKN------GDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGF 404
Query: 331 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI--IELLEALEA 388
+ A A+ N V N+ + ++ L C+ G++ E L++ +
Sbjct: 405 CSLGQMKNADMLLNAMLN----IGVCPNDITY----NILLDGHCKHGKVRDTEELKSAKG 456
Query: 389 MAKD 392
M D
Sbjct: 457 MVSD 460
>gi|356544457|ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 711
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 38/210 (18%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D M G+ P S+ L+ AY+++G HE A + + G++P ET AL F
Sbjct: 466 DAFLKMKKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAF 525
Query: 150 GSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G ++I M + + R + LV+ ++ + ++A V + A GL T
Sbjct: 526 RRAGDTQTLMKIWKLMRRYKVEGTRVTFNTLVDGFAKHGHYKEARDVISKFANVGLHPTV 585
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y++++ + G HS E+ EM A
Sbjct: 586 MTYNMLMNAYARGGQHSKLPELLEEMAAHN------------------------------ 615
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+KPD+ TY+ +I A+ R + +
Sbjct: 616 -------LKPDSVTYSTMIYAFLRVRDFSQ 638
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 130/321 (40%), Gaps = 52/321 (16%)
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
++V L + A ++ GV+ E L AL + F +GL ++ L IL+ +EK
Sbjct: 310 VIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSELEKKG 369
Query: 170 YDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD----------------EIYD 212
+ L++ ++ +E+A +F+ G++ T+ EI +
Sbjct: 370 VSSNAIVYNTLMDAYCKSNRVEEAEGLFIEMKTKGIKHTEATFNILMYAYSRKMQPEIVE 429
Query: 213 LMIAEDCKAGDHSNA-----LEIAY---------------EMEAAGRMATTFHFNHLLSC 252
++AE AG NA L AY +M+ G T+ + L+
Sbjct: 430 KLMAEMQDAGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYTALIHA 489
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
+ G E A+A FENM+ + +KP ETY ++ A+ RA + + +L+ +
Sbjct: 490 YSVSGWHEKAYAAFENMQ--REGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRYKVE 547
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 372
R+ T+ LV+ F K+ EA N V+ ++ + A
Sbjct: 548 GTRV-----TFNTLVDGFAKHGHYKEARDVISKFANVGLHPTVM--------TYNMLMNA 594
Query: 373 LCREGRIIELLEALEAMAKDN 393
R G+ +L E LE MA N
Sbjct: 595 YARGGQHSKLPELLEEMAAHN 615
>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
Length = 735
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 136/338 (40%), Gaps = 38/338 (11%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIAL 145
+VN+V+Y + GL G + A +++ +S G P H +
Sbjct: 349 KVNEVVYTSLIDGLCK--------------TGKIDAADELMQKMISEGFVPDAHSYSSLI 394
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
L K L+ L + MEK + I+++ELVR E K+F + G+
Sbjct: 395 DGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGIN 454
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y + + C+ G +A + +M G +N L+ A G+ AF+T
Sbjct: 455 PDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFST 514
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL-----LGMMVED--HKRLQP 318
FE M G+ + KP+ ++Y +++ + S D D+ ++ L +++ED ++L
Sbjct: 515 FEVM-VGKGW-KPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPL 572
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
Y+ + C + + EA F +QN N D + + CR
Sbjct: 573 AADIYSCFIRCLCRVDRLEEAKHFFMGMQN--------ANLTPSEDVYTSIIDCCCRLKI 624
Query: 379 IIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
+ + L L++M K +P YR ++SS E
Sbjct: 625 LTDALTLLDSMTKSGY-LPHL-----ESYRIIISSLCE 656
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 146/366 (39%), Gaps = 34/366 (9%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
LM AR+R P + + M A L R++ L+ AY L GD A L L AG+
Sbjct: 48 LMALARHRMFPDMESLASRMPARNL----RTYTTLINAYCLAGDIPAAKQHLTSLLHAGL 103
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA--WLILVEELVRNKYLEDAN 193
P + + G+ T + M + +R A + L+ L+ + +A
Sbjct: 104 APDSYAYTSFVLGYCRAGMLTHACRVFVLM-PLRGCLRTAFTYTALLHGLLGAGMVREAM 162
Query: 194 KVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
VF+ G + A D +Y M+ C+AG A + E + G +N L+
Sbjct: 163 AVFV-GMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDG 221
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G E A FE M+ + P+ TY +I ++ +V+ L MVE
Sbjct: 222 YCNAGEMEHALKVFEGMD--GNRCSPNVRTYTELIHGLCKS---GKVERAMVLFSRMVE- 275
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 372
L+PNV TY L++ C FR L E ++ N+ F S+ + A
Sbjct: 276 -AGLEPNVVTYTALIQ---GQCNEGHLQCAFRLLHLME-TNGLVPNDWTF----SVLIDA 326
Query: 373 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIA 432
LC+ ++ E L ++ K V + +S I+ L + ++ + +
Sbjct: 327 LCKREKVEEAQLFLGSLVKKGVKVN----------EVVYTSLIDGLCKTGKIDAADELMQ 376
Query: 433 RYISEG 438
+ ISEG
Sbjct: 377 KMISEG 382
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 111/283 (39%), Gaps = 45/283 (15%)
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE 160
SP R++ L+ +G E AM R + AG+ P T AL + ++G
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFR 303
Query: 161 ILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L ME N + W +L++ L + + +E+A K G++ + +Y +I
Sbjct: 304 LLHLMET-NGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGL 362
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF---ENMEYG--- 272
CK G A E+ +M + G + ++ L+ C +++ AT + ME G
Sbjct: 363 CKTGKIDAADELMQKMISEGFVPDAHSYSSLI--DGLCRQKKLSQATLMLEDMMEKGIQA 420
Query: 273 -----------------------------EDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303
+ PD TY +++Y R++D
Sbjct: 421 SPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEE---GRMEDAE 477
Query: 304 ELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
++ MV+ + + PN+ TY L+ + V++A F +
Sbjct: 478 SMIVQMVD--RGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVM 518
>gi|218184685|gb|EEC67112.1| hypothetical protein OsI_33911 [Oryza sativa Indica Group]
Length = 291
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 122 GAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA 175
AM SL+RELS+G+ PL +AL +F LAT+ +EILA ME+ ++IR+A
Sbjct: 39 SAMQSLRRELSSGMHPLRGNFVALVHVFAKNDLATRCMEILATMERYKHNIRKA 92
>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 20/252 (7%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IAL 145
R V+ M+ G P P+ F+ LV AY +GDH A LK+ + G P + I +
Sbjct: 355 RCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILI 414
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLIL----VEELVR-----NKYLEDANKVF 196
+ G K + +L EK ++ ++L V R KY E A V
Sbjct: 415 GSICGDKD--SLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKY-EKAFSVI 471
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
G Y ++ C A A + EM+ G +A + + ++
Sbjct: 472 REMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKA 531
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G+ E A F M E P+ TY +I AY +A+ +V EL M+ +
Sbjct: 532 GLIEQARKWFNEMR--EVGCTPNVVTYTALIHAYLKAK---KVSYANELFETMLSEG--C 584
Query: 317 QPNVKTYALLVE 328
PN+ TY+ L++
Sbjct: 585 LPNIVTYSALID 596
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 13/256 (5%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
VI M + G+ +F LV Y G A+H+ R G P ++A + +
Sbjct: 200 VIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTP---DMVAFSIVIS 256
Query: 151 SKGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
S + E + + + + + LV R + A +VF G++
Sbjct: 257 SLCKKRRANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPN 316
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y ++I C+ G + A ++ EM AG FN L+ G E +
Sbjct: 317 VYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYN 376
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M+ DT +YN +I+++ R E+ +++ A++L +MV+ K + PN T+ +
Sbjct: 377 QMK--RLGCPADTISYNFIIESHCRDEN---LEEAAKILNLMVK--KGVAPNASTFNFIF 429
Query: 328 ECFTKYCAVTEAIRHF 343
C K V A R +
Sbjct: 430 GCIAKLHDVNGAHRMY 445
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/253 (20%), Positives = 97/253 (38%), Gaps = 43/253 (16%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R D + +V DM AG+ P ++ ++ + G A + AG P
Sbjct: 293 CRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNA 352
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T +L R+ G K L++ M+++ ++ ++E R++ LE+A K+
Sbjct: 353 VTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNL 412
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
K G+ ++ + K D + A + M+ L+CQ
Sbjct: 413 MVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKE-------------LNCQ----- 454
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
P+T TYN +++ + + S D V + + + D +++P
Sbjct: 455 -------------------PNTLTYNILMRMFAESRSTDMVLKMKKEM-----DESQVEP 490
Query: 319 NVKTYALLVECFT 331
NV TY +L+ F
Sbjct: 491 NVNTYRILISMFC 503
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 133/373 (35%), Gaps = 70/373 (18%)
Query: 84 DAPRVN---DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
D+ RVN D+I +MI G+ P + G ++A G +E A + G P
Sbjct: 297 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 356
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRG 199
T AL GL + + M + + + L+ LV N+ ++ A V
Sbjct: 357 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 416
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL--------- 250
+ G Y+ MI C GD A+ + M G A +N ++
Sbjct: 417 GRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNT 476
Query: 251 -------------SCQA--------TCGIPEV-----AFATFENMEYGEDYMKPDTETYN 284
C+ CG ++ AF F M +D + P+ TY
Sbjct: 477 TSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV--DDGLCPNEVTYT 534
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTKYCAVTEAIRH 342
+I Y + E D ++E KR +PNV+TY +L+ TK
Sbjct: 535 ALIDGYCKDEKLDTATS-------LLEHMKRSGCRPNVQTYNVLIHGLTKQ--------- 578
Query: 343 FRALQNYEGG---TKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDNQPVP 397
N+ G KV+ EG F + ++ + LC+ G LE M + Q
Sbjct: 579 ----NNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIE--QGCL 632
Query: 398 PRAMILSRKYRTL 410
P + S R L
Sbjct: 633 PNLLTYSSLIRAL 645
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 108/295 (36%), Gaps = 24/295 (8%)
Query: 35 KKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYD 94
KK Q+ H +L++ N + + G A R+ D++ D
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSG-------------NTTSALRILDLMRD 488
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
G P S+ L+ + E A + G+ P T AL +
Sbjct: 489 ---GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545
Query: 155 ATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+L M++ Q + +L+ L + A ++ + G+ Y
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 605
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
MI CK G S ALE+ +M G + ++ L+ G E A F +E
Sbjct: 606 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE--R 663
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+ PD TY +I+AY + +V+ LG M++ QP + TY +L++
Sbjct: 664 HGLIPDEITYVKMIEAYIMS---GKVEHAFNFLGRMIK--AGCQPTLWTYGVLIK 713
>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
Length = 866
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 127/302 (42%), Gaps = 16/302 (5%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+V++++ +M + G P S++ L+ AY G+ E A + AG P ET L
Sbjct: 302 KVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILL 361
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
L+G G + E+ M+ N + A + L++ Y ++ +F A+ +
Sbjct: 362 GLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVE 421
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
E Y+ +I K G H +A +I M G + ++ + ++ + E A T
Sbjct: 422 PNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVT 481
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
M E KP ETYN +I + R Y + + +G +R ++
Sbjct: 482 LNTMN--EMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGVARER-----DSFNG 534
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 385
++E F + EAI+ + ++ ++++ +E LS+Y C G + E +E
Sbjct: 535 VIEGFRQGGQFEEAIKAYVEMEK----SRLVPDERTLEAVLSVY----CIAGLVDESVEQ 586
Query: 386 LE 387
+
Sbjct: 587 FQ 588
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 109/262 (41%), Gaps = 13/262 (4%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ +D+ +M A G+S S+ L+ +Y NG +E ++ L+R V P T +
Sbjct: 161 KCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVI 220
Query: 147 RLFGSKGLATKGLEILAA---MEKINYDIRQAWLILVEELVRNKYLED-ANKVFLRGAKG 202
GL +GL L A E I DI +L N+ L D A VF +G
Sbjct: 221 NSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCA--CSNRGLGDEAEMVFRTMNEG 278
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ Y ++ K E+ EM + G + +N LL A G E A
Sbjct: 279 GVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDA 338
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F M+ E P+ ETY+ ++ Y + YD V+++ L M V + +P+ T
Sbjct: 339 TGVFRLMQ--EAGCVPNAETYSILLGLYGKHGRYDEVREL--FLEMKVSN---TEPDAAT 391
Query: 323 YALLVECFTKYCAVTEAIRHFR 344
Y L++ F + E + F
Sbjct: 392 YNTLIDVFGEGGYFKEVVTLFH 413
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 10/150 (6%)
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ + IY +MI+ + G +I EM A G + F + L++ G EV+
Sbjct: 140 KPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLE 199
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTY 323
E M+ ++ + P TYN VI + R D LLG+ E H+ +QP++ TY
Sbjct: 200 LLERMK--KERVSPSILTYNTVINSCARGG-----LDWEGLLGLFAEMRHEGIQPDIVTY 252
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
L+ + EA FR + EGG
Sbjct: 253 NTLLCACSNRGLGDEAEMVFRTMN--EGGV 280
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 112/291 (38%), Gaps = 45/291 (15%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
++ AG+ P R F+ L+ +G A + L GV+P T++ L
Sbjct: 233 LLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQP---TVVTFNTLMSGMCK 289
Query: 155 AT-----KGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
A+ L L A I D+ + ++ L + ++DA ++F + GL
Sbjct: 290 ASDLNNANALRGLMAKAGIAPDV-YTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTV 348
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ +I CK GD + LE+ +EM G A +N L++ C + ++ A
Sbjct: 349 VLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVN--GFCRVRDMKAANDIVE 406
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYD-------------------------------- 297
E +D +KPD TY +I + D
Sbjct: 407 EMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAG 466
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
R D +L M+E LQP+ TY ++++ F K V +H + +QN
Sbjct: 467 RSVDAERILCEMME--AGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQN 515
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 119/304 (39%), Gaps = 24/304 (7%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M AG++P ++ + G + AM + G+ P L L +G
Sbjct: 303 MAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGD 362
Query: 155 ATKGLEIL--AAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
T GLE+ A + D+ A+ LV R + ++ AN + K GL+ Y
Sbjct: 363 VTAGLELRWEMATRGVKADL-VAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYT 421
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP-EVAFATFENMEY 271
+I CK G+ A+E+ EM G + L+S + G + E ME
Sbjct: 422 TLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEA 481
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVECF 330
G ++PD TY VI A+ + DV + E +K P + TY +++ F
Sbjct: 482 G---LQPDNTTYTMVIDAFCKN------GDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGF 532
Query: 331 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI--IELLEALEA 388
+ A A+ N V N+ + ++ L C+ G++ E L++ +
Sbjct: 533 CSLGQMKNADMLLNAMLN----IGVCPNDITY----NILLDGHCKHGKVRDTEELKSAKG 584
Query: 389 MAKD 392
M D
Sbjct: 585 MVSD 588
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 8/214 (3%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDA 192
GV P T L F K L +L M++ + A+ L+ L + K E A
Sbjct: 372 GVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAA 431
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
N++FL + R++ IY +MI K G S A+++ EM+ G + +N L+S
Sbjct: 432 NELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSG 491
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G+ E AF+ ME E+ PD ++N ++ R R + E+ M ++D
Sbjct: 492 LVRAGMIEEAFSALRTME--ENGCTPDLNSHNIILNGLART---GRPEQATEMF-MKMKD 545
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
++P+ +Y ++ ++ EA + R +
Sbjct: 546 -SLIKPDAVSYNTILGSLSRSGMFEEAAKLMREM 578
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 17/226 (7%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ +LV V+ + A ++F GL T +IY ++A K+GD AL + EM+
Sbjct: 205 YSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEK-ALGLVQEMK 263
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
G T F + L+ G E A++ F NM +D KPD N +I + +A
Sbjct: 264 DKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNML--KDGCKPDVVLINNLINIFGKA-- 319
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC-FTKYCAVTEAIRHFRALQNYEGGTK 354
R++D +L M + PNV TY +++ F +EA F ++
Sbjct: 320 -GRLEDALKLFDQM--RSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMK----ANG 372
Query: 355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 400
V + + S+ + C+ R+ + L LE M + P P A
Sbjct: 373 VTPSSFTY----SILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAA 414
>gi|356557981|ref|XP_003547288.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 706
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 101/258 (39%), Gaps = 13/258 (5%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M + G P ++ AYT G+ + A+ R + L +++G G
Sbjct: 242 MPSFGCEPDNNVCSSMIYAYTRTGNTDMALRLYDRAKAGKWHVDTAVFSGLIKMYGVSGN 301
Query: 155 ATKGLEILAAME----KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
L + M+ K N A L+ + R K DA ++ GL
Sbjct: 302 YVGCLNVYNDMKVLGAKPNLTTYNA---LLYAMGRAKRARDAKAIYGEMISNGLSPNWPT 358
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y ++ C+A + +AL + EM+ G+ +N L A G + A FE+M+
Sbjct: 359 YAALLQAYCRARFNRDALNVYKEMKEKGKDLDILLYNMLFDMCANVGCVDEAVKIFEHMK 418
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
PD+ TY +I Y+ S ++ ++ + M+E +PN+ LV C+
Sbjct: 419 -SSGTCPPDSFTYASLINMYS---SIGKILEMEAMFNEMMESG--FEPNIIVLTSLVHCY 472
Query: 331 TKYCAVTEAIRHFRALQN 348
K + ++ F L +
Sbjct: 473 GKAKRTDDVVKIFNQLMD 490
>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
Length = 784
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 13/233 (5%)
Query: 101 SPGPRS--FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
+PGP + + LV A++ G A+ +R + +GV+P T + ++ + K
Sbjct: 167 APGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKE 226
Query: 159 L-EILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
+ E++A+M++ + D R + L+ R ++A +VF G ++ ++
Sbjct: 227 VVELVASMKEHGVAPD-RYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLL 285
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
KA H A+E+ EME G + +N L+S G+ E A A + ME
Sbjct: 286 DVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKG-- 343
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
MKPD TY +I RA D + E M+ K PN+ TY L++
Sbjct: 344 MKPDVVTYTTLISGLDRAGKIDAA--IVEYDEMVRNGCK---PNLCTYNALIK 391
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 9/236 (3%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M G+ P ++ L+ G + A+ + G +P T AL ++ G +G
Sbjct: 338 EMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRG 397
Query: 154 LATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
+ + + + DI W L+ +N + + VF K G + Y
Sbjct: 398 KFPEMMAVFDEFRSAGFVPDI-VTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTY 456
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+I+ + G A++I M AG +N +LS A G E A F ME
Sbjct: 457 VSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME- 515
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVA-ELLGMMVEDHKRLQPNVKTYALL 326
E KPD +Y+ ++ AY A+ D+++ ++ ++ +E H L VKT L+
Sbjct: 516 -ERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWL---VKTLVLV 567
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 118/295 (40%), Gaps = 39/295 (13%)
Query: 54 LSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVA 113
+ST +V+SA +G R E+L RD P S+ L+ A
Sbjct: 488 VSTYNAVLSALARGGRWEQAEKLFAEMEERDC---------------KPDEYSYSSLLHA 532
Query: 114 YTLNGDHEGAMHSLKREL-SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI 172
Y N M +L ++ S + P H L+ L SK + LA EK ++
Sbjct: 533 YA-NAKRLDKMKALSDDIYSERIEP-HNWLVKTLVLVNSK------VNNLAEAEKAFLEL 584
Query: 173 RQAWLIL--------VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
RQ L V +N+ + K+ + + + Y+ ++ + GD
Sbjct: 585 RQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDC 644
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
I E++++G + +N ++ G + A F M+ +KPD TYN
Sbjct: 645 EKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG--LKPDVVTYN 702
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+++Y S ++ EL+ MV + +PN +TY +VE + + +T+A
Sbjct: 703 IFVKSYV---SNSMFEEAIELVRYMVT--QGCKPNERTYNSIVEGYCRNGKLTDA 752
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 120/296 (40%), Gaps = 32/296 (10%)
Query: 102 PGP--RSFHGLVVAYTLNGDHE---GAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156
PGP ++ LV+ Y N D E G + R + L L +L
Sbjct: 220 PGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGKLH------- 272
Query: 157 KGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
+ LE A M E + + + +LV L + +A +F + G Y ++I
Sbjct: 273 EALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLI 332
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
CK G AL++ EM G + FN L+ G+ E A ME +
Sbjct: 333 DYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKK-- 390
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
+ P+ TYN +I + R +S DR LL MVE +L P+V TY L+ +
Sbjct: 391 VCPNVRTYNELICGFCRGKSMDRAM---ALLNKMVES--KLSPDVVTYNTLIHGLCEVGV 445
Query: 336 VTEAIRHFRALQNYEGGTKVLHNEGNFGD--PLSLYLRALCREGRIIELLEALEAM 389
V A R FR ++ +G D + ++ LCR GR+ E + LE++
Sbjct: 446 VDSASRLFR----------LMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESL 491
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 77/375 (20%), Positives = 145/375 (38%), Gaps = 60/375 (16%)
Query: 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAA 164
++ L+ Y G E A KR L+ P T + +G + ++
Sbjct: 501 HAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVED 560
Query: 165 MEKINYDIR---QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKA 221
M K +D++ + ILVEE+++ + AN++ R G + Y I C
Sbjct: 561 MAK--FDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQ 618
Query: 222 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 281
G A E+ +++ G + +F +N L++ G+ + AF M +G +P
Sbjct: 619 GRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRM-FGTG-CEPSYL 676
Query: 282 TY-----NCVIQAYTRAESYDRVQDVAEL--------------LGMMVEDHKRLQ----- 317
TY + VI+ + + S DV+ G+ +++
Sbjct: 677 TYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCV 736
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG---TKVLHNEGNFGDPLSLYLRALC 374
PN+ TY+ L+ K + A + ++ EGG ++++HN L + C
Sbjct: 737 PNLNTYSKLINGLCKVGRLNVAFSLYHHMR--EGGISPSEIIHNS---------LLSSCC 785
Query: 375 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPL-QEEAE--------LG 425
+ G E + L++M + + + Y+ L+ E + +E+AE G
Sbjct: 786 KLGMFGEAVTLLDSMMECSHLAHLES------YKLLICGLFEQMNKEKAEAVFCSLLRCG 839
Query: 426 YEIDYIARYISEGGL 440
Y D +A + GL
Sbjct: 840 YNYDEVAWKVLIDGL 854
>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
Length = 766
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 13/233 (5%)
Query: 101 SPGPRS--FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
+PGP + + LV A++ G A+ +R + +GV+P T + ++ + K
Sbjct: 149 APGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKE 208
Query: 159 L-EILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
+ E++A+M++ + D R + L+ R ++A +VF G ++ ++
Sbjct: 209 VVELVASMKEHGVAPD-RYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLL 267
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
KA H A+E+ EME G + +N L+S G+ E A A + ME
Sbjct: 268 DVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKG-- 325
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
MKPD TY +I RA D + E M+ K PN+ TY L++
Sbjct: 326 MKPDVVTYTTLISGLDRAGKIDAA--IVEYDEMVRNGCK---PNLCTYNALIK 373
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 9/236 (3%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M G+ P ++ L+ G + A+ + G +P T AL ++ G +G
Sbjct: 320 EMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRG 379
Query: 154 LATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
+ + + + DI W L+ +N + + VF K G + Y
Sbjct: 380 KFPEMMAVFDEFRSAGFVPDI-VTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTY 438
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+I+ + G A++I M AG +N +LS A G E A F ME
Sbjct: 439 VSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME- 497
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVA-ELLGMMVEDHKRLQPNVKTYALL 326
E KPD +Y+ ++ AY A+ D+++ ++ ++ +E H L VKT L+
Sbjct: 498 -ERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWL---VKTLVLV 549
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 118/295 (40%), Gaps = 39/295 (13%)
Query: 54 LSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVA 113
+ST +V+SA +G R E+L RD P S+ L+ A
Sbjct: 470 VSTYNAVLSALARGGRWEQAEKLFAEMEERDC---------------KPDEYSYSSLLHA 514
Query: 114 YTLNGDHEGAMHSLKREL-SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI 172
Y N M +L ++ S + P H L+ L SK + LA EK ++
Sbjct: 515 YA-NAKRLDKMKALSDDIYSERIEP-HNWLVKTLVLVNSK------VNNLAEAEKAFLEL 566
Query: 173 RQAWLIL--------VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
RQ L V +N+ + K+ + + + Y+ ++ + GD
Sbjct: 567 RQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDC 626
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
I E++++G + +N ++ G + A F M+ +KPD TYN
Sbjct: 627 EKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG--LKPDVVTYN 684
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+++Y S ++ EL+ MV + +PN +TY +VE + + +T+A
Sbjct: 685 IFVKSYV---SNSMFEEAIELVRYMVT--QGCKPNERTYNSIVEGYCRNGKLTDA 734
>gi|443895302|dbj|GAC72648.1| FOG: PPR repeat [Pseudozyma antarctica T-34]
Length = 1376
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 20/258 (7%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+AR D + M G+ P ++ L+ + L D + A H+L+ ++AG P
Sbjct: 692 YARRSDIDTALSIFEQMRDVGIQPDKYTYTILIQGFALRRDPDAAAHTLRAMVAAGHTPD 751
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV--- 195
T AL + G+ + + M++ D R I V ++ Y+ A V
Sbjct: 752 RITYAALLNCYVESGVYGAAIRLFGWMQR-RRDARIRPSIEVCNMILKAYVLSALPVQKV 810
Query: 196 --FLRGA-KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME---------AAGRMATT 243
F+ + GL+ + Y LM+ C AG A ++ E E G+ A
Sbjct: 811 MRFVSSVRRAGLQPNAQTYALMLQSACDAGLMHIAEDVFSEAENVLPNPREGGVGQGANL 870
Query: 244 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303
FHF ++ G A F+ M+ + ++P T++ ++ +Y R+++ +
Sbjct: 871 FHFTIMIHGYLRLGDQTEAKEYFDEMQRRK--LRPSAITWSVMVHSYARSDNDVNYNLAS 928
Query: 304 ELLGMMV--EDHKRLQPN 319
L+ +V ED K +P+
Sbjct: 929 TLVSQLVSDEDSKAFKPS 946
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 80/201 (39%), Gaps = 14/201 (6%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ R ++ A +F + G++ Y ++I D A M AAG
Sbjct: 688 LIDTYARRSDIDTALSIFEQMRDVGIQPDKYTYTILIQGFALRRDPDAAAHTLRAMVAAG 747
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY-MKPDTETYNCVIQAYTRAESYD 297
+ LL+C G+ A F M+ D ++P E N +++AY S
Sbjct: 748 HTPDRITYAALLNCYVESGVYGAAIRLFGWMQRRRDARIRPSIEVCNMILKAYVL--SAL 805
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVE--CFTKYCAVTEAIRHFRALQNY-----E 350
VQ V + + LQPN +TYAL+++ C + E + F +N E
Sbjct: 806 PVQKVMRFVSSV--RRAGLQPNAQTYALMLQSACDAGLMHIAEDV--FSEAENVLPNPRE 861
Query: 351 GGTKVLHNEGNFGDPLSLYLR 371
GG N +F + YLR
Sbjct: 862 GGVGQGANLFHFTIMIHGYLR 882
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 13/253 (5%)
Query: 82 NRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET 141
+R+A +V D +M AAG P +F+ L+ Y HE A+ LKR +AG P T
Sbjct: 271 HREAAQVFD---EMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVT 327
Query: 142 LIALARLFGSKGLATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
+L + GL + LE+ ME + D+ + L+ L R ++ A +
Sbjct: 328 YNSLISAYVKDGLLEEALELKQEMEFRGMKPDV-VTYTTLISGLDRVGKIDAALATYSEM 386
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
+ G Y+ +I G + + + ++ +AG + +N LLS G+
Sbjct: 387 VRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLD 446
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
F+ M+ Y+ P+ +TY +I +Y+R +D+ E+ M+E + P+
Sbjct: 447 SEVSGVFKEMKKA-GYI-PERDTYVSLISSYSRCGLFDQAM---EIYKRMIE--AGIYPD 499
Query: 320 VKTYALLVECFTK 332
+ TY ++ +
Sbjct: 500 ISTYNAVLSALAR 512
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 9/231 (3%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P ++ L+ G + A+ + + G P T AL +L G +G T+
Sbjct: 355 GMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEM 414
Query: 159 LEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+ + + Y D+ W L+ +N + + VF K G + Y +I+
Sbjct: 415 MAVFDDLRSAGYVPDV-VTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLIS 473
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
+ G A+EI M AG +N +LS A G E A F M +
Sbjct: 474 SYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMV--DRDC 531
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAE-LLGMMVEDHKRLQPNVKTYALL 326
KPD +Y+ ++ AY A+ D+++ ++E + +E H L VKT L+
Sbjct: 532 KPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWL---VKTLVLV 579
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 120/323 (37%), Gaps = 78/323 (24%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP----LHETLI 143
V+ V +M AG P ++ L+ +Y+ G + AM KR + AG+ P + L
Sbjct: 449 VSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLS 508
Query: 144 ALAR---------LFG---------------SKGLATKGLEILAAMEKINYDI------R 173
ALAR LF S A + L M+ ++ DI R
Sbjct: 509 ALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIER 568
Query: 174 QAWLILVEELVRNKY--LEDANKVF--------------------LRGAKGGLRATDEIY 211
WL+ LV NK L + K F + G ++ +E+
Sbjct: 569 HNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVL 628
Query: 212 DLMIAED---------------CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
LM+ + GD I E++++G + +N ++
Sbjct: 629 SLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRK 688
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G + A F M+ +KPD TYN I++Y ++ D+ L +
Sbjct: 689 GQMKEASRLFSEMKCSG--VKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVT-----QGC 741
Query: 317 QPNVKTYALLVECFTKYCAVTEA 339
+PN +T+ +++ ++++ + EA
Sbjct: 742 RPNERTFNSILQGYSRHGRMVEA 764
Score = 40.0 bits (92), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 40/233 (17%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
++ A +P ++ LV A++ G A+ +R + GV+P T + + +
Sbjct: 175 ILEAAPAPDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSV 234
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
K E++A ++ + D + R++Y Y+ +
Sbjct: 235 PWK--EVVALVDSMKED----------GIERDRY---------------------TYNTL 261
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I+ + G H A ++ EM+AAG FN LL E A + ME
Sbjct: 262 ISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAG- 320
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
P TYN +I AY + +++ EL M + + ++P+V TY L+
Sbjct: 321 -CTPSVVTYNSLISAYVKD---GLLEEALELKQEM--EFRGMKPDVVTYTTLI 367
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 133/373 (35%), Gaps = 70/373 (18%)
Query: 84 DAPRVN---DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
D+ RVN D+I +MI G+ P + G ++A G +E A + G P
Sbjct: 297 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 356
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRG 199
T AL GL + + M + + + L+ LV N+ ++ A V
Sbjct: 357 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 416
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL--------- 250
+ G Y+ MI C GD A+ + M G A +N ++
Sbjct: 417 GRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNT 476
Query: 251 -------------SC--------QATCGIPEV-----AFATFENMEYGEDYMKPDTETYN 284
C + CG ++ AF F M +D + P+ TY
Sbjct: 477 TSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV--DDGLCPNEVTYT 534
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTKYCAVTEAIRH 342
+I Y + E D ++E KR +PNV+TY +L+ TK
Sbjct: 535 ALIDGYCKDEKLDTATS-------LLEHMKRSGCRPNVQTYNVLIHGLTKQ--------- 578
Query: 343 FRALQNYEGG---TKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDNQPVP 397
N+ G KV+ EG F + ++ + LC+ G LE M + Q
Sbjct: 579 ----NNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIE--QGCL 632
Query: 398 PRAMILSRKYRTL 410
P + S R L
Sbjct: 633 PNLLTYSSLIRAL 645
Score = 40.4 bits (93), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 108/295 (36%), Gaps = 24/295 (8%)
Query: 35 KKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYD 94
KK Q+ H +L++ N + + G A R+ D++ D
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSG-------------NTTSALRILDLMRD 488
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
G P S+ L+ + E A + G+ P T AL +
Sbjct: 489 ---GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545
Query: 155 ATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+L M++ Q + +L+ L + A ++ + G+ Y
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 605
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
MI CK G S ALE+ +M G + ++ L+ G E A F +E
Sbjct: 606 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE--R 663
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+ PD TY +I+AY + +V+ LG M++ QP + TY +L++
Sbjct: 664 HGLIPDEITYVKMIEAYIMS---GKVEHAFNFLGRMIK--AGCQPTLWTYGVLIK 713
>gi|356502612|ref|XP_003520112.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 697
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 40/211 (18%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D M G+ P +S+ L+ AY+++G HE A + + + G++P ET L F
Sbjct: 448 DAFLKMKKVGVKPTSQSYTALIHAYSVSGLHEKAYAAFENMQNEGIKPSIETYTTLLNAF 507
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G A +EI M EK+ + ILV+ + +A +V K GL+ T
Sbjct: 508 RHAGDAQTLMEIWKLMISEKVE-GTGATFNILVDGFAKQGLFMEAREVISEFGKVGLKPT 566
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+++I + G HS ++ EM
Sbjct: 567 VVTYNMLINAYARGGQHSKLPQLLKEMAVLK----------------------------- 597
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+KPD+ TY+ +I A+ R + R
Sbjct: 598 --------LKPDSVTYSTMIFAFVRVRDFRR 620
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 105/272 (38%), Gaps = 51/272 (18%)
Query: 76 LMQHARNRDAPR-VNDVIYDMIAAGLSPGPRSFHGLVVAY--TLNGDHEGAMHSLKRELS 132
LM R P+ V ++ +M GL P S+ L++AY N A + +
Sbjct: 396 LMHAYSRRMQPKIVEKLLEEMQDVGLKPNATSYTCLIIAYGKQKNMSDMAAADAFLKMKK 455
Query: 133 AGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDA 192
GV+P ++ AL + GL K AA E + +
Sbjct: 456 VGVKPTSQSYTALIHAYSVSGLHEKAY---AAFENMQNE--------------------- 491
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
G++ + E Y ++ AGD +EI M + T FN L+
Sbjct: 492 ----------GIKPSIETYTTLLNAFRHAGDAQTLMEIWKLMISEKVEGTGATFNILVDG 541
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
A G+ A E+G+ +KP TYN +I AY R + ++ + + + ++
Sbjct: 542 FAKQGLFMEAREVIS--EFGKVGLKPTVVTYNMLINAYARGGQHSKLPQLLKEMAVL--- 596
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 344
+L+P+ TY+ ++ F + +R FR
Sbjct: 597 --KLKPDSVTYSTMIFAFVR-------VRDFR 619
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 45/244 (18%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDA 192
GVR E L AL F +GL + L I + MEK + L++ ++ ++E A
Sbjct: 315 GVRWSEEVLGALINSFCVEGLRRQALIIQSEMEKKGVSSSAIVYNTLMDAFCKSNHIEAA 374
Query: 193 NKVFLRGAKGGLRATDEIYDL----------------MIAEDCKAGDHSNA-----LEIA 231
+F+ G++ Y++ ++ E G NA L IA
Sbjct: 375 EGLFVEMKAKGIKPIAATYNILMHAYSRRMQPKIVEKLLEEMQDVGLKPNATSYTCLIIA 434
Query: 232 Y----------------EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
Y +M+ G T+ + L+ + G+ E A+A FENM+ +
Sbjct: 435 YGKQKNMSDMAAADAFLKMKKVGVKPTSQSYTALIHAYSVSGLHEKAYAAFENMQ--NEG 492
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
+KP ETY ++ A+ A Q + E+ +M+ + +++ T+ +LV+ F K
Sbjct: 493 IKPSIETYTTLLNAFRHA---GDAQTLMEIWKLMISE--KVEGTGATFNILVDGFAKQGL 547
Query: 336 VTEA 339
EA
Sbjct: 548 FMEA 551
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 115/287 (40%), Gaps = 31/287 (10%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+DA + F + + G+R ++E+ +I C G AL I EME G ++ +N L
Sbjct: 302 KDAWQFFEKMNRKGVRWSEEVLGALINSFCVEGLRRQALIIQSEMEKKGVSSSAIVYNTL 361
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ-DVAELLGM 308
+ E A F M+ +KP TYN ++ AY+R R+Q + E L
Sbjct: 362 MDAFCKSNHIEAAEGLFVEMK--AKGIKPIAATYNILMHAYSR-----RMQPKIVEKLLE 414
Query: 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 368
++D L+PN +Y L+ + K +++ L+ + G K P S
Sbjct: 415 EMQD-VGLKPNATSYTCLIIAYGKQKNMSDMAAADAFLKMKKVGVK----------PTSQ 463
Query: 369 YLRALCREGRIIELLE----ALEAMAKDN-QPVPPRAMILSRKYR------TLVSSWIEP 417
AL + L E A E M + +P L +R TL+ W
Sbjct: 464 SYTALIHAYSVSGLHEKAYAAFENMQNEGIKPSIETYTTLLNAFRHAGDAQTLMEIWKLM 523
Query: 418 LQEEAE-LGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGF 463
+ E+ E G + + ++ GL E + + GK L P V +
Sbjct: 524 ISEKVEGTGATFNILVDGFAKQGLFMEAREVISEFGKVGLKPTVVTY 570
>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
Length = 1091
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 18/259 (6%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G+SP R++ L+VA+ D + + L + GV+P + R+ G
Sbjct: 197 MVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAAR 256
Query: 155 ATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ IL ME D+ ++++ L L DA VF + K + D +
Sbjct: 257 FDEAYHILGKMEDSGCKPDV-VTHTVIIQVLCDAGRLSDAKAVFWK-MKASDQKPDRVTY 314
Query: 213 LMIAEDCK-AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+ + + C +GD + +E+ M A G + ++ G + A A F+ M+
Sbjct: 315 ITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMK- 373
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
E M P+ +YN +I + +A+ +DR EL M + PN T+ L + +
Sbjct: 374 -EKGMSPEQYSYNSLISGFLKADMFDR---ALELFNHM--NACGPSPNGYTHVLFINYYG 427
Query: 332 KYCAVTEAIRHFRALQNYE 350
K + + +A+Q YE
Sbjct: 428 K------SGQSLKAIQRYE 440
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 108/270 (40%), Gaps = 13/270 (4%)
Query: 73 MEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS 132
++ L Q R +A V D +M G+SP S++ L+ + + A+ +
Sbjct: 353 VDALCQVGRVDEALAVFD---EMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNA 409
Query: 133 AGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLE 190
G P T + +G G + K ++ M+ I D+ A +L L + L
Sbjct: 410 CGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYS-LAGSGRLG 468
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
A +VF G+ Y +MI KA A+ +M +G + N L+
Sbjct: 469 MAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLI 528
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
G A+ F ++ E ++P TYN ++ R +V++V +LL M
Sbjct: 529 DTLYKGGKGNEAWQLFHKLK--EMKIEPTNGTYNTLLSGLGRE---GKVKEVMQLLEEMT 583
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
PN+ TY +++C +K V AI
Sbjct: 584 R--TIYPPNLITYNTVLDCLSKNGEVNCAI 611
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 12/240 (5%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALA 146
D+ Y++++ G SP P ++ L+ +G A + L G P ++ L+
Sbjct: 857 DLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGH 916
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
R+ G+ + E + + IN DI+ ++ IL++ L L D F + + GL
Sbjct: 917 RIAGNTENVCQLFEKMVE-QGINPDIK-SYTILIDTLCTAGRLNDGLCYFRQLHELGLEP 974
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
+Y+L+I K+ A+ + EM+ G + + +N L+ G A +
Sbjct: 975 DLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMY 1034
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
E E KP TYN +I+ Y+ + S D + G M+ QPN TY L
Sbjct: 1035 E--ELLRKGWKPSVFTYNALIRGYSVSGSTD---NAYAAYGQMIVGG--CQPNSSTYMQL 1087
>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 621
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 14/215 (6%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ LV L R K + + + A G++ + + MI +G A++I +M
Sbjct: 97 TYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKM 156
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G TT +N L+ G P + E M E+ +KP+ TYN +IQA+
Sbjct: 157 KEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDEN-VKPNDRTYNILIQAWC--- 212
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354
+ ++++ +L MV +QP+V TY + + + +A R +Q K
Sbjct: 213 TKKKLEEAWNVLHKMVASG--IQPDVVTYNTMARAYAQNGETEKAERLILKMQY----NK 266
Query: 355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
V NE G +S Y C+EG + E L L M
Sbjct: 267 VKPNERTCGIIISGY----CKEGNMTEALRFLYRM 297
Score = 48.1 bits (113), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 97/238 (40%), Gaps = 49/238 (20%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
+ P R+++ L+ A+ E A + L + +++G++P T +AR + G
Sbjct: 196 NVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGET--- 252
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
E A ++ L+ ++ + ++I+
Sbjct: 253 -------------------------------EKAERLILKMQYNKVKPNERTCGIIISGY 281
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHL----LSCQATCGIPEVAFATFENMEYGED 274
CK G+ + AL Y M+ G FN L L T G+ E A E E+G
Sbjct: 282 CKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDE-ALTLME--EFG-- 336
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+KPD T++ ++ A++ A D + E+ MV+ ++P++ Y++L + + +
Sbjct: 337 -IKPDVVTFSTIMNAWSSAGLMDNCE---EIFNDMVK--AGIEPDIHAYSILAKGYVR 388
Score = 43.5 bits (101), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 18/244 (7%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V++ M+A+G+ P +++ + AY NG+ E A + + V+P T + +
Sbjct: 222 NVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGY 281
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE--DANKV---FLRGAKGGL 204
+G T+ L L M+++ ++ L++ YL+ D N V + G+
Sbjct: 282 CKEGNMTEALRFLYRMKELGVHPNP---VVFNSLIKG-YLDATDTNGVDEALTLMEEFGI 337
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ + ++ AG N EI +M AG ++ L G P A +
Sbjct: 338 KPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAES 397
Query: 265 TFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+M +YG ++ + + +I + A DR + E + M PN+KTY
Sbjct: 398 LLTSMSKYG---VQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEM-----GTSPNLKTY 449
Query: 324 ALLV 327
L+
Sbjct: 450 ETLI 453
>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 114/295 (38%), Gaps = 37/295 (12%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ D RV ++ +M G P +++ L+ L G + A+ L R +S+ P
Sbjct: 262 CKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNE 321
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T + +G A G +L ME+ Y + + + +LV L + E+A ++F
Sbjct: 322 VTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKE 381
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS------- 251
G + +Y ++ C+ A++I EM G F F+ L+
Sbjct: 382 SMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGN 441
Query: 252 -----------CQATCGIPEVAFATF-----ENMEYGEDYM----------KPDTETYNC 285
+ C EV ++ ++ + E M +PD Y+
Sbjct: 442 SHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSS 501
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
+IQ A S V++ +L M+ QP+V TY +L K +++ A+
Sbjct: 502 MIQGLCDAGS---VEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAV 553
Score = 40.0 bits (92), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 4/156 (2%)
Query: 192 ANKVFLRGAK-GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
++K+F K G + D + +I + D ++ ++ M R+ + F +
Sbjct: 55 SDKIFSSPPKMGSFKVGDSTFYSLIENYAYSSDFNSLEKVLNRMRLENRVFSEKSFFVMF 114
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
+P A F M + E Y KP +++N V+ +A +DR + ++
Sbjct: 115 KAYGKAHLPNKAIELFYRMSF-EFYCKPTVKSFNSVLNVIIQAGFHDRALEFYN--HVVG 171
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ PNV ++ L+++ K V AI FR +
Sbjct: 172 AKDMNILPNVLSFNLIIKSMCKLGLVDNAIELFREM 207
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 131/308 (42%), Gaps = 25/308 (8%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNG-DHEGAMHSLKRELSAGVRPLHETLIALARLF 149
V M +GL P +++ ++ A G + + + + L GV+P T +L +
Sbjct: 244 VFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVC 303
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
GL + M I+ D+ + L++ + + ++ A ++ L +
Sbjct: 304 SRGGLWEAARNLFNEMIDRGIDQDVF-TYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPN 362
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y M KAG +AL + EM+ G +N LLS A G E A +
Sbjct: 363 VVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCK 422
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M G +K D TYN ++ Y + ++ +V + M +D R+ PN+ TY+ L+
Sbjct: 423 EM--GSSGVKKDVVTYNALLDGYGKQGKFN---EVTRVFKEMKKD--RVFPNLLTYSTLI 475
Query: 328 ECFTKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRALCREGRIIELLE 384
+ ++K EA+ FR + + G K VL++E + ALC+ G + +
Sbjct: 476 DVYSKGSLYEEAMEVFREFK--QAGLKADVVLYSE---------LINALCKNGLVDSAVL 524
Query: 385 ALEAMAKD 392
L+ M K+
Sbjct: 525 LLDEMTKE 532
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 120/301 (39%), Gaps = 16/301 (5%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D++ + G++P ++ L+ + +G + A G+ P T L F
Sbjct: 341 DLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSF 400
Query: 150 GSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G L L M ++ + L+ + L A +F GL+
Sbjct: 401 CKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNV 460
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
IY +I+ CK G+ NA + +EM G T+ F L+S C +A A
Sbjct: 461 VIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALIS--GLCHANRMAEANKLF 518
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
E E + P+ TYN +I+ + + + R ELL MVE K L P+ TY L+
Sbjct: 519 GEMVEWNVIPNEVTYNVLIEGHCKEGNTVR---AFELLDEMVE--KGLVPDTYTYRPLIS 573
Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 388
V+EA LQ G + NE F S L C+EGR+ + L+A
Sbjct: 574 GLCSTGRVSEAREFMNDLQ----GEQQKLNEMCF----SALLHGYCKEGRLDDALDACRE 625
Query: 389 M 389
M
Sbjct: 626 M 626
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 122/294 (41%), Gaps = 19/294 (6%)
Query: 102 PGPRS--FHGLVVAYTLNGDHEGAMHSL-KRELSAGVRPLHETLIALARLFGSKGLATKG 158
P P + ++ L+ Y ++G E A L K + AG P T + KG
Sbjct: 332 PNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSA 391
Query: 159 LEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
LE L M K ++ + IL++ + + E+A+KV + GL Y+ +I
Sbjct: 392 LEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGA 451
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
CK G +AL++ EM + G + FN L+ E A + +M + +
Sbjct: 452 LCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLL--EGVI 509
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
+T TYN +I A+ R E +Q +L+G M + + TY L++ K A
Sbjct: 510 ANTVTYNTLIHAFLRLE---LIQQADKLVGEM--RFRGCPLDNITYNGLIKALCKTGATE 564
Query: 338 EAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391
+ + + E + + ++ + + CR G++ + L+ L M +
Sbjct: 565 KCLGLIEQMFGEEIFPSI--------NSCNILINSFCRTGKVNDALQFLRDMIQ 610
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 113/295 (38%), Gaps = 44/295 (14%)
Query: 90 DVIY-DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARL 148
D++Y +M+ AG P +F+ ++ G A+ L + G P T L
Sbjct: 357 DLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDG 416
Query: 149 FGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
F +G + +++ +M + + L+ L ++ ++DA +++ + G +
Sbjct: 417 FCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPD 476
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL----------------- 250
++ +I CK AL + +M G +A T +N L+
Sbjct: 477 IYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVG 536
Query: 251 -----SC-----------QATC--GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
C +A C G E E M +GE+ P + N +I ++ R
Sbjct: 537 EMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQM-FGEEIF-PSINSCNILINSFCR 594
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+V D + L M++ + L P++ TY L+ K EA+ F LQ
Sbjct: 595 T---GKVNDALQFLRDMIQ--RGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQ 644
Score = 40.8 bits (94), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 128/330 (38%), Gaps = 62/330 (18%)
Query: 84 DAPRVN-DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
+ P+V +V YDM++ G+SP +F ++ A+ + + + A L+ G P
Sbjct: 179 NCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIY 238
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
L + +++L M +L+ E V + N V K
Sbjct: 239 QMLIHALSENNRVNEAMKLLEEM----------FLMGCEPDV-----QTFNDVIHGLCKA 283
Query: 203 G-LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA---------------TTFHF 246
G + +++D M+ D A +AL Y M RM T +
Sbjct: 284 GRIHEAAKLHDRMLLRDFTA----DALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLY 339
Query: 247 NHLLSCQATCG-IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
N L++ G E ++NM +PD T+N +I + + E
Sbjct: 340 NTLINGYVVSGRFEEAKDLLYKNMVIAG--FEPDAFTFNIMIDGLCKK---GYLVSALEF 394
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365
L MV+ K +PNV TY +L++ F K ++E +KV+++ G
Sbjct: 395 LDEMVK--KGFEPNVITYTILIDGFCKQ-------------GHFEEASKVVNSMSAKGLS 439
Query: 366 L-----SLYLRALCREGRIIELLEALEAMA 390
L + + ALC++G+I + L+ M+
Sbjct: 440 LNTVGYNCLIGALCKDGKIQDALQMYGEMS 469
>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 99/256 (38%), Gaps = 20/256 (7%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R ++ MIA G P F+ LV AY + D A LK+ +P + L
Sbjct: 361 RCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420
Query: 147 RLFGSKG---------LATKGL-EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF 196
S G LA K E+L+A +N + + L E A KV
Sbjct: 421 GSICSGGELPGPVTFELAEKAYNEMLSAGTVLN---KVNVVSFARCLCGFGKFEKAYKVI 477
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
G Y +I C A NA + EM+ G + + + L+ C +
Sbjct: 478 HEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKA 537
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
GI + A + M D +P TY +I AY +A+ +V EL +M+ K
Sbjct: 538 GIIKQAHNWLDEMV--RDGCEPTVVTYTTLIHAYLKAK---KVSVANELFELMIA--KGC 590
Query: 317 QPNVKTYALLVECFTK 332
PNV TY L++ + K
Sbjct: 591 FPNVITYTALIDGYCK 606
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 131/308 (42%), Gaps = 25/308 (8%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNG-DHEGAMHSLKRELSAGVRPLHETLIALARLF 149
V M +GL P +++ ++ A G + + + + L GV+P T +L +
Sbjct: 244 VFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVC 303
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
GL + M I+ D+ + L++ + + ++ A ++ L +
Sbjct: 304 SRGGLWEAARNLFNEMIDRGIDQDVF-TYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPN 362
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y M KAG +AL + EM+ G +N LLS A G E A +
Sbjct: 363 VVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCK 422
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M G +K D TYN ++ Y + ++ +V + M +D R+ PN+ TY+ L+
Sbjct: 423 EM--GSSGVKKDVVTYNALLDGYGKQGKFN---EVTRVFKEMKKD--RVFPNLLTYSTLI 475
Query: 328 ECFTKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRALCREGRIIELLE 384
+ ++K EA+ FR + + G K VL++E + ALC+ G + +
Sbjct: 476 DVYSKGSLYEEAMEVFREFK--QAGLKADVVLYSE---------LINALCKNGLVDSAVL 524
Query: 385 ALEAMAKD 392
L+ M K+
Sbjct: 525 LLDEMTKE 532
>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 766
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 119/283 (42%), Gaps = 28/283 (9%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS----KGLATK 157
P +++ L+ Y G E A + R G++P ++ + + G GL
Sbjct: 404 PNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKP---DVVTVNTIVGGMCRHHGLNMA 460
Query: 158 GLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
L MEK + ++ ++ L+ +E A F + + G +IY +I
Sbjct: 461 VL-FFMDMEKEGVKGNV-VTYMTLIHACCSLSNIEKAMHWFDKMLEAGCSPDAKIYYALI 518
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
+ C+ +A+ + ++ G +N L+ E + +ME ++
Sbjct: 519 SGLCQVRRDHDAIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDME--KEG 576
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
MKPD+ TYN +I + + + ++ V+ + E M ED L P V TY ++E +
Sbjct: 577 MKPDSITYNTLISFFGKHKDFESVERMME---QMREDE--LDPTVATYGAVIEAYCSVGE 631
Query: 336 VTEAIRHFR--ALQNYEGGTKVLHN--------EGNFGDPLSL 368
+ EA++ F+ L++ V++N GNFG LSL
Sbjct: 632 LGEALKLFKDMGLRSKVNPNTVIYNILINAFSKLGNFGQALSL 674
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 14/172 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L RN + N + L+ + +R ++I CK+ AL++ +E
Sbjct: 300 LLSCLGRNMNIGRMNALVLKMDEMKIRPDVVTLGILINTLCKSRRVDEALQV-FEQMCGK 358
Query: 239 RM-------ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 291
R A + HFN L+ G + A M+ E+ P+T TYNC+I Y
Sbjct: 359 RTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKM-EERCVPNTVTYNCLIDGYC 417
Query: 292 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
RA +++ E++ M ED ++P+V T +V ++ + A+ F
Sbjct: 418 RA---GKLETAKEVVSRMKEDG--IKPDVVTVNTIVGGMCRHHGLNMAVLFF 464
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 41/192 (21%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + L+ L + + DA +V + +GG Y+++I C + E+ +
Sbjct: 512 KIYYALISGLCQVRRDHDAIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTD 571
Query: 234 MEAAGRMATTFHFNHLLS---------------------------------CQATCGIPE 260
ME G + +N L+S +A C + E
Sbjct: 572 MEKEGMKPDSITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGE 631
Query: 261 V--AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ A F++M + P+T YN +I A+++ ++ + + E + M K ++P
Sbjct: 632 LGEALKLFKDMGL-RSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKM-----KMVRP 685
Query: 319 NVKTYALLVECF 330
NV+TY L +C
Sbjct: 686 NVETYNALFKCL 697
>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 711
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 134/365 (36%), Gaps = 67/365 (18%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
FM+ L +H R+++A ++ Y M A G P ++ L+ Y G M
Sbjct: 227 FMDSLCKHGRSKEAA---EIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMK 283
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYL 189
G+ L + +G+ + + IL+ M + ++ D+ + L+ L R L
Sbjct: 284 GDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVF-TYSTLISALCRMGRL 342
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA------------ 237
DA F + G++ +Y +I C GD A E+ YEM
Sbjct: 343 ADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNS 402
Query: 238 --------GRMATTFH----------------FNHLLSCQATCGIPEVAFATFENMEYGE 273
GR+ H FN L+ G AF+ + M
Sbjct: 403 IVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAG 462
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
+ PDT TYN ++ Y ++ R+ D L M + K+++P TY ++++
Sbjct: 463 --IGPDTFTYNTLVNGYFKS---GRIDDGLNLFREMSD--KKIKPTTVTYNIILDGL--- 512
Query: 334 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL-----YLRALCREGRIIELLEALEA 388
FRA + K+LH G +SL L+ LCR E + +
Sbjct: 513 ---------FRAGRTV-AAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQK 562
Query: 389 MAKDN 393
+ N
Sbjct: 563 LCTMN 567
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 117/316 (37%), Gaps = 42/316 (13%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
E+A K+F GL ++ + CK G A EI Y M A G + L
Sbjct: 203 EEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGIL 262
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC-----VIQAYTRAESYDRVQDV-A 303
L AT G F +M + MK D NC +I AY + D + +
Sbjct: 263 LHGYATEG-------CFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILS 315
Query: 304 ELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL--QNYEGGTKVLHNEGN 361
E+ G + L P+V TY+ L+ + + +A+ F + + T V H+
Sbjct: 316 EMQG------QGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHS--- 366
Query: 362 FGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMI------LSRKYRTLVSSWI 415
++ C G +++ E + M + P P A + ++ R + + I
Sbjct: 367 -------LIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHI 419
Query: 416 EPLQEEAELGYEIDYIARYISEGGLTGERKR---WVPRRGKTPLDPDAVGFIYSNPMETS 472
L ++ +I I L GE + + + PD F Y+ +
Sbjct: 420 FDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDT--FTYNTLVNGY 477
Query: 473 FKQRCLEDGKKYHRKL 488
FK ++DG R++
Sbjct: 478 FKSGRIDDGLNLFREM 493
>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
IL+ L + +E A ++ R GL + IY+ MI C+ GD A ME
Sbjct: 359 ILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQ 418
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G +N L+ + C + E+ A E + + P ETYN +I Y R +D
Sbjct: 419 GMKPDHLAYNCLI--RRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFD 476
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+ D+ + + ED+ + PNV +Y L+ C K + EA
Sbjct: 477 KCFDILKEM----EDNGTM-PNVVSYGTLINCLCKGSKLLEA 513
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 14/238 (5%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P +++ L+ + G+ E A + + GV P ET L +G K K
Sbjct: 419 GMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKC 478
Query: 159 LEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+IL ME N + ++ L+ L + L +A V G+ IY+++I
Sbjct: 479 FDILKEMED-NGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLID 537
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
C G +A + EM G +N L+ + G +++ A +E +
Sbjct: 538 GCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTG--KLSEAEDLLLEISRKGL 595
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTK 332
KPD TYN +I Y A + R +A + E+ KR ++P +KTY LL+ TK
Sbjct: 596 KPDVFTYNSLISGYGFAGNVQRC--IA-----LYEEMKRSGIKPTLKTYHLLISLCTK 646
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 15/170 (8%)
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
IY+++I CK ++A ++ EM A + + +N L+ G PE +F E M
Sbjct: 216 IYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERM 275
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ D+++P T+N +++ +A V+D +L M + P+ T+++L
Sbjct: 276 K--ADHIEPSLITFNTLLKGLFKA---GMVEDAENVLKEMKD--LGFVPDAFTFSIL--- 325
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 379
F Y + +A AL YE T V S+ L ALC+EG+I
Sbjct: 326 FDGYSSNEKAE---AALGVYE--TAVDSGVKMNAYTCSILLNALCKEGKI 370
>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 99/256 (38%), Gaps = 20/256 (7%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R ++ MIA G P F+ LV AY + D A LK+ +P + L
Sbjct: 361 RCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420
Query: 147 RLFGSKG---------LATKGL-EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF 196
S G LA K E+L+A +N + + L E A KV
Sbjct: 421 GSICSGGELPGPVTFELAEKAYNEMLSAGTVLN---KVNVVSFARCLCGFGKFEKAYKVI 477
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
G Y +I C A NA + EM+ G + + + L+ C +
Sbjct: 478 HEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKA 537
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
GI + A + M D +P TY +I AY +A+ +V EL +M+ K
Sbjct: 538 GIIKQAHNWLDEMV--RDGCEPTVVTYTTLIHAYLKAK---KVSVANELFELMIA--KGC 590
Query: 317 QPNVKTYALLVECFTK 332
PNV TY L++ + K
Sbjct: 591 FPNVITYTALIDGYCK 606
>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 130/321 (40%), Gaps = 16/321 (4%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H + + + +M + P ++ LV A+ G E A ++ G P
Sbjct: 263 HGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPD 322
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFL 197
AL + G EI + M+ + + R ++ I+V+ R EDA VF
Sbjct: 323 VYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFE 382
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ G+ T + + L+++ KAGD + +I E+ +G TF N +L+ G
Sbjct: 383 EMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLG 442
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
ME G D TYN +I Y RA +++++ + + L K L+
Sbjct: 443 QFGKMEEVLTAMESGP--YATDISTYNILINIYGRAGFFEKMEGLFQSLAA-----KNLK 495
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
P+V T+ + +++ T+ + F + + G H +G L L + E
Sbjct: 496 PDVVTWTSRLGAYSRKKLYTKCLEIFEEM--IDAGC---HPDGRTAKVL---LSSCSSED 547
Query: 378 RIIELLEALEAMAKDNQPVPP 398
+I ++ + M K+ + V P
Sbjct: 548 QIEQVTTVIRTMHKNMETVLP 568
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 7/157 (4%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ +L++ + LE A +F K GL + +Y+ I KAG+ A+EI M+
Sbjct: 186 YALLLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMK 245
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+T + L++ +A F M KP+ TY ++ A+ R
Sbjct: 246 RDCCQPSTETYTLLINLHGKASQSYMALKLFNEMR--SQKCKPNICTYTALVNAFAREGL 303
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
++ +++ E L ED +P+V Y L+E +++
Sbjct: 304 CEKAEEIFEQLQ---EDGH--EPDVYAYNALMEAYSR 335
>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
Length = 834
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 120/284 (42%), Gaps = 18/284 (6%)
Query: 69 RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSF----HGLVVAYTLNGDHEGAM 124
+L + + + + + + D + +M +GL S+ HGLVVA G+ + A+
Sbjct: 383 KLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVA----GEVDTAL 438
Query: 125 HSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEE 182
R ++ G+ P L KG + +L M + I D + LV+
Sbjct: 439 TIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPD-AFVYATLVDG 497
Query: 183 LVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT 242
+R+ L++A K+F + GL Y++MI K+G NA+ +M A +
Sbjct: 498 FIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPD 557
Query: 243 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
F F+ ++ F M + KP+ TY +I Y R +
Sbjct: 558 IFTFSTIIDGYVKQHNMNAVLKIFGLMV--KQNCKPNVVTYTSLINGYCRKGE----TKM 611
Query: 303 AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
AE L M+ H L+P+V TY++L+ F K + +A+ +F +
Sbjct: 612 AEKLFSMMRSHG-LKPSVVTYSILIGSFCKEAKLGKAVSYFELM 654
Score = 40.4 bits (93), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 54/284 (19%), Positives = 104/284 (36%), Gaps = 43/284 (15%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL---- 154
G P ++ L+ Y G+ E A K+ G P +T +L F G+
Sbjct: 238 GCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAI 297
Query: 155 -------ATKGL--------EILAAMEKINYDIRQ-----------------AWLILVEE 182
+GL I+ A K+ +DI+ + L+
Sbjct: 298 DLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINH 357
Query: 183 LVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT 242
+E+A K+ + + GL Y ++ CK G+++ A + EM +G
Sbjct: 358 FCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVD 417
Query: 243 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
+ L+ G + A + M + PD YN ++ + ++
Sbjct: 418 MISYGALIHGLVVAGEVDTALTIRDRMM--NRGILPDANIYNVLMNGLFKK---GKLSMA 472
Query: 303 AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+L M++ + + P+ YA LV+ F ++ + EA + F+ +
Sbjct: 473 KVMLTEMLD--QNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLI 514
>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
Length = 823
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 9/170 (5%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
++ ++N + ++A ++F + G Y+ ++ K G H A E+ EMEAAG
Sbjct: 290 MITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAG 349
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+N L++ A G+ + A A +++ + PD TY +I A+ RAE Y++
Sbjct: 350 ISPNIVTYNELIAAYARAGLCDEAAALKKSLL--SKGLCPDEFTYCTLISAFNRAERYEK 407
Query: 299 VQDVAELLGMMVEDHK-RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
L E K PN+ TY +L++ + + + + ++ F+ +Q
Sbjct: 408 A------LETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQ 451
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 3/218 (1%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
++++ +M AAG+SP +++ L+ AY G + A K LS G+ P T L
Sbjct: 338 ASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLIS 397
Query: 148 LFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
F K LE M K N + IL++ R + L+D KVF +
Sbjct: 398 AFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTP 457
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
++ ++ G + + EM+ AG M FN L+ C CG + + +
Sbjct: 458 DLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIY 517
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
+ + ++P T+ ++ + R + + + V++
Sbjct: 518 KGLL--RTGLQPTVPTFAALMASLAREGRWQQCEKVSQ 553
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 110/269 (40%), Gaps = 31/269 (11%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V++V +M AG PG +F+ L+ Y G + ++ K L G++P T AL
Sbjct: 478 VSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMA 537
Query: 148 LFGSKG-----------LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF 196
+G +A GL++ A + ++ + KY+++ K
Sbjct: 538 SLAREGRWQQCEKVSQEMAEAGLQLSDACHA---GLIHSYANSGQFFQLRKYIDELEKSA 594
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ G L T + CK G + A ++ G FN ++S A
Sbjct: 595 KQPLSGILCKT------FVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKR 648
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G E A E + + +KPD TYNC++ Y R Y + ++V + + +R
Sbjct: 649 GWIERAVKLLEEIRKAQ--LKPDGVTYNCLMSMYGREGMYYKAEEV-------MSEMRRA 699
Query: 317 --QPNVKTYALLVECFTKYCAVTEAIRHF 343
PN+ TY L+ +TK+ + +A R F
Sbjct: 700 GKAPNLITYNTLLYSYTKHGRMDDAARVF 728
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 11/252 (4%)
Query: 77 MQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVR 136
+Q++ ++A R+ +M AG P +++ L+ Y G H+ A L +AG+
Sbjct: 295 IQNSHCQEALRL---FQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGIS 351
Query: 137 PLHETLIALARLFGSKGLATKGLEILAA-MEKINYDIRQAWLILVEELVRNKYLEDANKV 195
P T L + GL + + + + K + L+ R + E A +
Sbjct: 352 PNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALET 411
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F K Y+++I + + +++ M+ +N LL
Sbjct: 412 FTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGN 471
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
CG+ F M+ YM P +T+N +I+ Y R D D+ + G++
Sbjct: 472 CGMLTEVSNVFREMKRA-GYM-PGVDTFNILIECYGRCGYVDYSVDIYK--GLL---RTG 524
Query: 316 LQPNVKTYALLV 327
LQP V T+A L+
Sbjct: 525 LQPTVPTFAALM 536
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 116/275 (42%), Gaps = 13/275 (4%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L++ +R+A V V M+ G+ P R++ L+VA+ D E + L+ + GV
Sbjct: 295 LVKSGFDREALEVYRV---MMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGV 351
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDAN 193
+P + R+ G + ILA ME D+ +L++ L + DA
Sbjct: 352 KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDV-ITHTVLIQVLCDAGRISDAK 410
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
VF + K + Y ++ + GD + +EI M+A G + ++
Sbjct: 411 DVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDAL 470
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
G A F+ M+ + + P+ +YN +I + +A DR D EL M D
Sbjct: 471 CQVGRVFEALEMFDEMK--QKGIVPEQYSYNSLISGFLKA---DRFGDALELFKHM--DI 523
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
+PN T+ L + + K +AI+ + +++
Sbjct: 524 HGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKS 558
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 73 MEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEG-AMHSLKREL 131
++ L Q R +A + D +M G+ P S++ L+ + L D G A+ K
Sbjct: 467 IDALCQVGRVFEALEMFD---EMKQKGIVPEQYSYNSLISGF-LKADRFGDALELFKHMD 522
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYL 189
G +P T + +G G + K ++ M+ I D+ +L L ++ L
Sbjct: 523 IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFG-LAKSGRL 581
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
A +VF G+ Y +MI KA A++I Y+M + N L
Sbjct: 582 GMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSL 641
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G + A+ F ++ E ++P TYN ++ R +V++V LL M
Sbjct: 642 IDTLYKAGRGDEAWRIFYQLK--EMNLEPTDGTYNTLLAGLGRE---GKVKEVMHLLEEM 696
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
H PN+ TY +++C K AV +A+
Sbjct: 697 Y--HSNYPPNLITYNTILDCLCKNGAVNDAL 725
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 11/222 (4%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP--- 137
++R + D+ Y++++ G SP P ++ L+ G E A + L G +
Sbjct: 962 KSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCT 1021
Query: 138 LHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKV 195
++ L+ R+ G+ K + M + IN DI+ ++ I+++ L + L D
Sbjct: 1022 IYNILLNGHRIAGN---TEKVCHLFQDMVDQGINPDIK-SYTIIIDTLCKAGQLNDGLTY 1077
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F + + GL Y+L+I K+ A+ + EM+ G + + +N L+
Sbjct: 1078 FRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1137
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G A +E E KP+ TYN +I+ Y+ + S D
Sbjct: 1138 AGKAAEAGKMYE--ELLTKGWKPNVFTYNALIRGYSVSGSTD 1177
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 9/170 (5%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
++ LV+++ LE A ++ G T Y ++ KAG +A + EM G
Sbjct: 956 IISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 1015
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA-ESYD 297
A +N LL+ G E F++M + + PD ++Y +I +A + D
Sbjct: 1016 CKANCTIYNILLNGHRIAGNTEKVCHLFQDMV--DQGINPDIKSYTIIIDTLCKAGQLND 1073
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ +LL M L+P++ TY LL++ K + EA+ F +Q
Sbjct: 1074 GLTYFRQLLEM------GLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ 1117
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 85/202 (42%), Gaps = 4/202 (1%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ L++ R DA ++ +M+ G ++ L+ + + G+ E H + +
Sbjct: 991 LLDGLLKAGRIEDA---ENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMV 1047
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLE 190
G+ P ++ + G GL + ++ + + +L++ L ++K LE
Sbjct: 1048 DQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLE 1107
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+A +F K G+ Y+ +I KAG + A ++ E+ G F +N L+
Sbjct: 1108 EAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALI 1167
Query: 251 SCQATCGIPEVAFATFENMEYG 272
+ G + A+A + M G
Sbjct: 1168 RGYSVSGSTDSAYAAYGRMIVG 1189
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 114/289 (39%), Gaps = 37/289 (12%)
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANK 194
+P T I L FG G + +EI AM+ Y D A+ +++ L + + +A +
Sbjct: 422 KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALE 481
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+F + G+ Y+ +I+ KA +ALE+ M+ G + ++
Sbjct: 482 MFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYG 541
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G A +E M+ + PD N V+ ++ + V L M
Sbjct: 542 KSGESIKAIQRYELMK--SKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM----- 594
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFR-ALQN----------------YEGG----- 352
+ P+ TY ++++C +K EA++ F ++N Y+ G
Sbjct: 595 GVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEA 654
Query: 353 ------TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP 395
K ++ E G +L L L REG++ E++ LE M N P
Sbjct: 655 WRIFYQLKEMNLEPTDGTYNTL-LAGLGREGKVKEVMHLLEEMYHSNYP 702
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 79/170 (46%), Gaps = 9/170 (5%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L++ + ++ +E+ KV + G +T Y+ +I+ K+ A+++ Y + +
Sbjct: 920 LLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQ 979
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESY 296
G T + LL G E A F M EYG K + YN ++ + A +
Sbjct: 980 GFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG---CKANCTIYNILLNGHRIAGNT 1036
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
++V L MV+ + + P++K+Y ++++ K + + + +FR L
Sbjct: 1037 EKV---CHLFQDMVD--QGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQL 1081
>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 100/249 (40%), Gaps = 9/249 (3%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
I+D I P +++ L+ + + + A + +S G RP T + +
Sbjct: 147 IFDSIKDRFVPDSKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCK 206
Query: 152 KGLATKGLEILAAMEK-INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
G + L I+ M+ + + +LV +EDA FL G+ +
Sbjct: 207 AGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAV 266
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ +I CKA N + EM+ G + FN +LS G + A+ F M
Sbjct: 267 YNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRM- 325
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+PD +TY +I+ + + + V + + + KR P++ T+ +L+
Sbjct: 326 --IKVCEPDADTYTMMIKMFCERDELKKALKVWKYMKL-----KRFMPSMHTFQVLINGL 378
Query: 331 TKYCAVTEA 339
+ VT+A
Sbjct: 379 CEKGDVTQA 387
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 117/282 (41%), Gaps = 10/282 (3%)
Query: 70 LIFMEELMQ-HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
++F+ LM + + +V +M +P S++ ++ A + H + S
Sbjct: 338 VVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWF 397
Query: 129 RELSA-GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRN 186
++ A V P T L + K L +L M++ + A+ L+ L +
Sbjct: 398 DKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKA 457
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
K E AN++F + + +Y +MI K G S A+++ EM+ G + +
Sbjct: 458 KRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
N L+S G+ A + ME E+ + D ++N ++ + R R ++ E +
Sbjct: 518 NALMSGMVKAGMINEANSLLRKME--ENGCRADINSHNIILNGFARTGVPRRAIEMFETI 575
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
H ++P+ TY L+ CF EA R R +++
Sbjct: 576 -----KHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKD 612
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 19/221 (8%)
Query: 181 EELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
E+L RN + A ++F ++ T++IY ++ K G AL++ EM+ AG
Sbjct: 244 EKLGRN---DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCS 300
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
T + + L+ G + A+ +++M D + PD N ++ + + +
Sbjct: 301 PTVYTYTELIKGLGKAGRVDEAYGFYKDML--RDGLTPDVVFLNNLMNILGKVGRVEELT 358
Query: 301 DVAELLGMMVEDHKRLQPNVKTYALLVEC-FTKYCAVTEAIRHFRALQNYEGGTKVLHNE 359
+V +GM R P V +Y +++ F V+E F ++ V +E
Sbjct: 359 NVFSEMGMW-----RCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK----ADSVSPSE 409
Query: 360 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 400
+ S+ + C+ R+ + L LE M + P P A
Sbjct: 410 FTY----SILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAA 446
>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
Length = 941
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 110/290 (37%), Gaps = 14/290 (4%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
+D V D+I GL P ++ ++ A+ G+ + A+H +K RP T
Sbjct: 518 KDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTF 577
Query: 143 IALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
+ + F G + LEI M + + LV LV + +E A ++ A
Sbjct: 578 MPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMAL 637
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G+ + Y ++ GD A E +M G F + LL G +
Sbjct: 638 AGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQS 697
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A A M + +T YN +I + R + + A+L+ M + + +QP++
Sbjct: 698 ALAVTREM--NAQKIPRNTFVYNILIDGWARRGD---IWEAADLMQQM--NQEGVQPDIH 750
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQ------NYEGGTKVLHNEGNFGDP 365
TY + K + A + ++ N + T ++H N P
Sbjct: 751 TYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLP 800
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 9/220 (4%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R + +++ +M AG+SP ++ ++ Y GD A + + G++ T
Sbjct: 623 RKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTY 682
Query: 143 IALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
AL + G L + M +KI + + IL++ R + +A + +
Sbjct: 683 EALLKACCKSGRMQSALAVTREMNAQKIPRNTF-VYNILIDGWARRGDIWEAADLMQQMN 741
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ G++ Y I CKAGD A + EMEAAG + L+ A +PE
Sbjct: 742 QEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPE 801
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAY----TRAESY 296
A + FE ++ +KPD Y+C++ + T AE+Y
Sbjct: 802 KALSCFEELKLAG--LKPDKAVYHCLMTSLLSRATVAEAY 839
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/329 (19%), Positives = 124/329 (37%), Gaps = 22/329 (6%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R ++ +M G+ +H ++ YT+ + E + KR G P T L
Sbjct: 417 RAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLI 476
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
++ G +K LE+ M+ + + + +L+ ++ K +A VF K GL+
Sbjct: 477 NMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLK 536
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+Y+ +I C G+ A+ + EM+ T+ F ++ A G A
Sbjct: 537 PDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEI 596
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
F+ M P T+N ++ ++ ++ + + + + P+ TY
Sbjct: 597 FDMMR--RSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMAL-----AGVSPDEHTYTT 649
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 385
++ + +A +F ++N V E L+A C+ GR+ L
Sbjct: 650 IMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEA--------LLKACCKSGRMQSALAV 701
Query: 386 LEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
M + Q +P + Y L+ W
Sbjct: 702 TREM--NAQKIPRNTFV----YNILIDGW 724
>gi|242041805|ref|XP_002468297.1| hypothetical protein SORBIDRAFT_01g043190 [Sorghum bicolor]
gi|241922151|gb|EER95295.1| hypothetical protein SORBIDRAFT_01g043190 [Sorghum bicolor]
Length = 581
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 12/217 (5%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+ GL P ++ + T G E A+ + R LSAG++P +LI + S G
Sbjct: 317 EMLQKGLDPSEDIMKAIIASCTKEGKWEFALSTFSRMLSAGMKP---SLILFNSIINSLG 373
Query: 154 LATK---GLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRA--T 207
A + + ++K Q W L+ L R+ D ++F +G K A
Sbjct: 374 KAGQDELAFRMYHLLKKSGLKPDQYTWSALLSGLYRSGRCWDCLELF-QGIKAKHPALLN 432
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
+Y++ + K G + L++ + ME G + +NH++ P+VA ++
Sbjct: 433 GHLYNIALMSCEKLGQWEHGLQLLWMMEKGGLEISVVSYNHVIGACEFASEPKVALKVYQ 492
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
M PDT T+ VI+A + V+D+ E
Sbjct: 493 RMI--NRRCSPDTFTHLSVIRACIWGSLWTEVEDILE 527
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 98/239 (41%), Gaps = 8/239 (3%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M AGL P + L+ + G+ + A +K +AGV+P T L R G
Sbjct: 338 EMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLG 397
Query: 154 LATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ IL M KI Y + +++E +R E+A + KGG+ Y
Sbjct: 398 RMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYS 457
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
++I C+ G+ A + +M A G F + L+S G +A T + M
Sbjct: 458 IIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMT-- 515
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ + PD YN +I + D + E M+E K QPN TY L+ ++
Sbjct: 516 RENLTPDLYCYNSLIIGLSNVGKMD---EAIEYYDEMLE--KGFQPNDFTYGGLIHGYS 569
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 129/308 (41%), Gaps = 21/308 (6%)
Query: 93 YD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA--LARLF 149
YD M+ G P ++ GL+ Y++ G+ E A L + L++G+ P ++ + A L F
Sbjct: 546 YDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNP-NDFIYAQILEGYF 604
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
S L + + +EK + + I++ L + +++ A V K GL
Sbjct: 605 KSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSL 664
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
IY +I+ CKA D A+ + EM G +N L+ C +++ A
Sbjct: 665 IYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALI--DGFCKSDDISHARNIFN 722
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ P+ TY +I Y +A ++D +L M+ + + P+ Y++L
Sbjct: 723 SIICKGLPPNCVTYTTLIDGYCKAGD---IRDAIDLYNEMLTEG--VAPDAFVYSVLAAG 777
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+ + +A+ F + G ++ + + + C+ G++ E ++ L M
Sbjct: 778 CSNSGDLQQAL--FITEEMIARGYAIISS-------FNTLVHGFCKRGKLQETVKFLHVM 828
Query: 390 AKDNQPVP 397
D VP
Sbjct: 829 -MDKDIVP 835
Score = 46.2 bits (108), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 10/156 (6%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ +R ++A K+ + G++ YD +I CK G A I +M G
Sbjct: 354 LIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIG 413
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
MA T +N ++ E AF M G + P+ TY+ +I + +R
Sbjct: 414 YMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGG--ISPNVYTYSIIINGLCQIGESER 471
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
+ LL M+ D L+PN YA L+ + YC
Sbjct: 472 ---ASGLLEQMIADG--LKPNAFVYAPLI---SGYC 499
Score = 40.0 bits (92), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 106/266 (39%), Gaps = 18/266 (6%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R + ++ MIA GL P + L+ Y G A +LK+ + P +L
Sbjct: 471 RASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLI 530
Query: 147 RLFGSKGLATKGLEILAAMEKINY---DIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
+ G + +E M + + D LI + N LE A ++ + G
Sbjct: 531 IGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGN--LEKAEQLLHQMLNSG 588
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
L D IY ++ K+ + M G M + ++ ++ G + A
Sbjct: 589 LNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAV 648
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR-LQPNVKT 322
+ +E ++ + PD+ Y +I + +A D+ + +G++ E K+ ++P +
Sbjct: 649 SVLSVIE--KNGLVPDSLIYGSLISGFCKA------ADMEKAVGLLDEMAKKGIEPGISC 700
Query: 323 YALLVECFTKYCAVTEAIRHFRALQN 348
Y L++ F K ++ I H R + N
Sbjct: 701 YNALIDGFCK----SDDISHARNIFN 722
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 133/373 (35%), Gaps = 70/373 (18%)
Query: 84 DAPRVN---DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
D+ RVN D+I +MI G+ P + G ++A G +E A + G P
Sbjct: 297 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 356
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRG 199
T AL G+ + + M + + + L+ LV N+ ++ A V
Sbjct: 357 TYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 416
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL--------- 250
+ G Y+ MI C GD A+ + M G A +N ++
Sbjct: 417 GRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNT 476
Query: 251 -------------SCQA--------TCGIPEV-----AFATFENMEYGEDYMKPDTETYN 284
C+ CG ++ AF F M +D + P+ TY
Sbjct: 477 TSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV--DDGLCPNEVTYT 534
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTKYCAVTEAIRH 342
+I Y + E D ++E KR +PNV+TY +L+ TK
Sbjct: 535 ALIDGYCKDEKLDTATS-------LLEHMKRSGCRPNVQTYNVLIHGLTKQ--------- 578
Query: 343 FRALQNYEGG---TKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDNQPVP 397
N+ G KV+ EG F + ++ + LC+ G LE M + Q
Sbjct: 579 ----NNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIE--QGCL 632
Query: 398 PRAMILSRKYRTL 410
P + S R L
Sbjct: 633 PNLLTYSSLIRAL 645
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 108/295 (36%), Gaps = 24/295 (8%)
Query: 35 KKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYD 94
KK Q+ H +L++ N + + G A R+ D++ D
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSG-------------NTTSALRILDLMRD 488
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
G P S+ L+ + E A + G+ P T AL +
Sbjct: 489 ---GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545
Query: 155 ATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+L M++ Q + +L+ L + A ++ + G+ Y
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 605
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
MI CK G S ALE+ +M G + ++ L+ G E A F +E
Sbjct: 606 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE--R 663
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+ PD TY +I+AY + +V+ LG M++ QP + TY +L++
Sbjct: 664 HGLIPDEITYVKMIEAYIMS---GKVEHAFNFLGRMIK--AGCQPTLWTYGVLIK 713
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 147/360 (40%), Gaps = 35/360 (9%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
D+IA G P +++ +++ + + A K+ + +G P T + G
Sbjct: 212 DVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVG 271
Query: 154 LATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
+ LE+ M ++ + D+ + ++ L + K ++DA+KV +K G Y
Sbjct: 272 NMARCLELYEEMTEKRFSPDVLLCNAV-IDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTY 330
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENM 269
++++ CK A E+ M G ++ +L+ C +V A F+ M
Sbjct: 331 NILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLN--GLCKTNKVHDARVLFDRM 388
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
E + PD T+N ++ +A D +D LL +M E H L P+ T L+
Sbjct: 389 I--ERKLVPDVVTFNILMDGLCKAGKLDEAKD---LLDVMSE-HNVL-PDGVTCTTLMHG 441
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+ EA+R F+ + VL P ++ L LCREG++ + L ++M
Sbjct: 442 LCRDKRTDEAVRLFQYMVEKGTVADVL--------PHNIVLAGLCREGKLAQALLFFKSM 493
Query: 390 AKDNQPVPPRAMILSRKYRTLVSSWIEP---------LQEEAELGYEIDYIARYISEGGL 440
K + P + Y TLV++ IE Q+ G DY+A GL
Sbjct: 494 VKSDGEFSPDVV----TYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGL 549
Score = 46.6 bits (109), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 110/296 (37%), Gaps = 14/296 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M G P ++ ++ G A+ ++ GV P T + G
Sbjct: 1 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60
Query: 155 ATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ E+ M E+ A+ L+ L +++ +E A K+ A G + Y+
Sbjct: 61 VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
+++ C+ G S A + M + G +N LL G A+ F+ M+ +
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
+ PD TYN +I + R E D + +L ++ K P+ TY ++ +
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTD---EAMKLFKDVIA--KGYMPDTVTYNSILLGLARK 235
Query: 334 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+ EA F+ + + G S+ L CR G + LE E M
Sbjct: 236 SNMDEAEEMFKKMVDSGCAPN--------GATYSIVLSGHCRVGNMARCLELYEEM 283
>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
Length = 607
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 10/178 (5%)
Query: 153 GLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
G I A+M+K + + R+A+ IL+ R K L +A+++F GL+ Y
Sbjct: 361 GRLVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTY 420
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+ +++ CKAGD S E+ M G + F L+ G + A F +M
Sbjct: 421 NTLLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSM-- 478
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVA-ELLGMMVEDHKRLQPNVKTYALLVE 328
GE ++P+T YN +I ++ R DVA +L M E++ + NV TY L++
Sbjct: 479 GEARIQPNTVIYNTLIDFLCKS----REVDVAIKLFDEMRENN--VPANVTTYNALLK 530
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 109/258 (42%), Gaps = 24/258 (9%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G +P +++ L A GD + A ++R GV P +I + + G GL G
Sbjct: 235 GCAPNTVTYNCLADACCRVGDIDMACQIVERMEKEGVTP---NVITMNTIVG--GLCRVG 289
Query: 159 LEILAAMEKINYDIRQAWL----------ILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+ AA++ + R WL LV + + A ++F A G
Sbjct: 290 -RVGAALDFFR-EKRTTWLEARGNAVTYSTLVSAFLHCNNVALAMELFHEMADQGYPPDA 347
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+Y MI+ +AG +A IA M+ AG +N L+ A FE
Sbjct: 348 VMYFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEE 407
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
M+ ++PD TYN ++ +A + V ELLG M++D QP+V T+ LV
Sbjct: 408 MKGAG--LQPDVYTYNTLLSCLCKAGDFSAVD---ELLGNMIDDG--CQPSVVTFGTLVH 460
Query: 329 CFTKYCAVTEAIRHFRAL 346
+ K EA++ FR++
Sbjct: 461 GYCKAGKTDEALKIFRSM 478
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 7/168 (4%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ ++ L + L DA + K G + + Y+++I C+ A ++ EM+
Sbjct: 350 YFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMK 409
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
AG + +N LLSC G NM +D +P T+ ++ Y +A
Sbjct: 410 GAGLQPDVYTYNTLLSCLCKAGDFSAVDELLGNMI--DDGCQPSVVTFGTLVHGYCKAGK 467
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
D + +G R+QPN Y L++ K V AI+ F
Sbjct: 468 TDEALKIFRSMG-----EARIQPNTVIYNTLIDFLCKSREVDVAIKLF 510
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 120/298 (40%), Gaps = 18/298 (6%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M G+ P + + +V Y G + A +++ + +G P T L + G
Sbjct: 373 EMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAG 432
Query: 154 LATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ + M + N + L ++ L R K LE+A K+ K G + Y
Sbjct: 433 NMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYG 492
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I K G+ AL++ EM+ + +T +N ++ CG E A + E
Sbjct: 493 TLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLN--ELL 550
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
E + PD TYN ++ Y R V+ + MVE+ +P+V T +L+
Sbjct: 551 ESGLLPDETTYNTILHGYCREGD---VEKAFQFHNKMVEN--SFKPDVFTCNILLRGLCM 605
Query: 333 YCAVTEAIRHFRA-LQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+ +A++ F + + V +N + +LC+EGR+ + L M
Sbjct: 606 EGVLEKALKLFNTWVSKGKAIDTVTYNT---------LITSLCKEGRLDDAFNLLSEM 654
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 8/223 (3%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ L + R DA D++ DM + GL P +++ LV Y G + A + ++
Sbjct: 249 ILDTLCKKGRLGDA---RDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMT 305
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYL 189
+ P T L ++G + ++ ME + D+ ++ L+ + +
Sbjct: 306 QNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDV-VSYNTLINGCLEWSKI 364
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+A K+ ++ G++ +++M+ CK G +A +ME +G +N L
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTL 424
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
++ G AF T + M G MK D+ T N +++ R
Sbjct: 425 INGYCKAGNMGEAFRTMDEM--GRKNMKMDSVTLNTILRTLCR 465
Score = 40.0 bits (92), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 766 WSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFG 825
+ +E +VE A Q K++E P + C +++R + LK+ S G
Sbjct: 568 YCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAID 627
Query: 826 SPLYDEII-SLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITS 870
+ Y+ +I SLC + G LD A ++++ME + T + +IT+
Sbjct: 628 TVTYNTLITSLCKE-GRLDDAFNLLSEMEEKELGPDHYTYNAIITA 672
>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
Length = 665
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 35/181 (19%)
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ GLR ++ MI C++G+ A++I +M G T FN L+ G PE
Sbjct: 131 QNGLRPDSIFFNPMINAFCESGNVKEAMKIFRKMREKGCKPTASTFNALIKGFGIIGKPE 190
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAY-----------------------------T 291
+ E M E+ +KPD TYN ++QA+ T
Sbjct: 191 ESSKLLEIMSR-EENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYNT 249
Query: 292 RAESYDRVQDV---AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
A +Y R ++ AEL+ M + ++ PNV+T ++V+ ++K + +A++ +Q
Sbjct: 250 IARAYARGKETSRAAELISQM--QNNKVAPNVRTCGIVVDGYSKEGNMADALKFIYKMQG 307
Query: 349 Y 349
+
Sbjct: 308 F 308
Score = 44.7 bits (104), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/246 (17%), Positives = 105/246 (42%), Gaps = 10/246 (4%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
+ P R+++ LV A+ + E A + R + AG++P T +AR + ++
Sbjct: 205 IKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYNTIARAYARGKETSRAA 264
Query: 160 EILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+++ M+ K+ ++R I+V+ + + DA K + G+ I++ ++
Sbjct: 265 ELISQMQNNKVAPNVRTCG-IVVDGYSKEGNMADALKFIYKMQGFGVHPNLFIFNSLLKG 323
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
D E M+ G ++ +++ ++ G+ E F++M + ++
Sbjct: 324 FLDITDTKGVDETLTLMQEFGVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDMI--KSGIE 381
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
PD ++ + + Y RA + + + E + PNV + ++ + +
Sbjct: 382 PDNHAFSILAKGYVRAGEPKKAEALLEAMAT-----HGAHPNVVMFTTIISGWCSAAKME 436
Query: 338 EAIRHF 343
+A+R +
Sbjct: 437 DALRVY 442
>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 130/327 (39%), Gaps = 35/327 (10%)
Query: 91 VIYDMIA-AGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
V++ MI G P R+F LV L G A+ K RP T L
Sbjct: 163 VVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGL 222
Query: 150 GSKGLATKGLEILAAMEKINYDIR-------QAWLILVEELVRNKYLEDANKVFLRGAKG 202
G L++ AM N D ++ +++ L ++ +E A + F+ +
Sbjct: 223 CRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEK 282
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ Y ++ C A + A + EM G + F+ L+ G + A
Sbjct: 283 GIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEA 342
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F+ M + Y++P T TYN +I+ Y A D + + L M+ +KR Q + +
Sbjct: 343 SGLFDLMV--QRYVEPSTRTYNILIEGYCLAGMVDEGKKI--FLSMV---NKRCQHDAGS 395
Query: 323 YALLVECFTKYCAVTEAIRHFRALQN---------YE--GGTKVLHNEGNFGDPL----- 366
Y++L++ + K V A+ +R + + Y G + L E F D +
Sbjct: 396 YSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYSKVGDARKLFGEIQFQDMVLDSIS 455
Query: 367 ----SLYLRALCREGRIIELLEALEAM 389
++YL LC+ G + E L+ +
Sbjct: 456 YSIYNVYLDGLCKNGCVSEALDVFYGL 482
>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 123/280 (43%), Gaps = 35/280 (12%)
Query: 121 EGAMHSLKRELSAGVRPLHE-TLIALARLFGSKGLATKGLEILAAMEKINYDIRQ----- 174
+G +H +++ +HE + L + F + + L++ A++ I +R+
Sbjct: 103 DGVLH----QMTYDTCKVHEGIFLNLMKHFSKSSMHERVLDMFYAIKSI---VREKPSLK 155
Query: 175 AWLILVEELVRNKYLEDANKVFLRG-AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A + LV + ++ A K+ + +K LR I+++++ C+ GD A E+ E
Sbjct: 156 AISTCLNLLVESDRVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKE 215
Query: 234 MEAAGRMA--TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 291
M++A R++ ++ L+ G + A FE M +D + PD TYN +I +
Sbjct: 216 MKSA-RVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEM-VSKDNILPDALTYNILINGFC 273
Query: 292 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEG 351
+ DR + + E + PNV Y++L+ + K + EA F +++
Sbjct: 274 QRGKVDRARTILEFM-----KSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSL-- 326
Query: 352 GTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAM 389
G D +S + LCR GR+ E E L+ M
Sbjct: 327 --------GMKPDTISYTTLINCLCRTGRVDEATELLQQM 358
>gi|115475155|ref|NP_001061174.1| Os08g0191900 [Oryza sativa Japonica Group]
gi|40253652|dbj|BAD05595.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623143|dbj|BAF23088.1| Os08g0191900 [Oryza sativa Japonica Group]
gi|125602452|gb|EAZ41777.1| hypothetical protein OsJ_26318 [Oryza sativa Japonica Group]
gi|215695295|dbj|BAG90486.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704436|dbj|BAG93870.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 609
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 111/247 (44%), Gaps = 14/247 (5%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
F LV AY GD A LK G +P + AL +G K + M+
Sbjct: 145 FLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQ 204
Query: 167 KINYDIRQ-AWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAEDCKAG 222
+ + I+++ V ++A +F L + + +++ +MI KAG
Sbjct: 205 TSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAG 264
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
D++ A ++ +M G +T FN L+S + EV+ + ++ M+ +KPD +
Sbjct: 265 DYAQARKLFAQMSERGIPLSTVTFNSLMSFETN--YKEVS-SIYDQMQ--RTALKPDVVS 319
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRH 342
Y+ +I+AY +A R ++ + M++ R P K+Y +L++ F V EA
Sbjct: 320 YSLLIKAYGKAR---REEEALAVFEEMLDAGVR--PTRKSYNILIDAFAISGLVEEAHTV 374
Query: 343 FRALQNY 349
F+A++ +
Sbjct: 375 FKAMRRH 381
>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 120/275 (43%), Gaps = 18/275 (6%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
F L+ AY G+ GA L G P + AL +G G I M+
Sbjct: 142 FLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQ 201
Query: 167 KINYDIRQ-AWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAEDCKAG 222
+ + I+++ V ++A +VF L K L+ ++Y +MI KAG
Sbjct: 202 SSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAG 261
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
++ A ++ M G +T +N L+S + + EV+ ++ M+ + ++PD +
Sbjct: 262 NYEKARKVFSSMVGKGVPQSTVTYNSLMSFETS--YKEVS-KIYDQMQRSD--IQPDVVS 316
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRH 342
Y +I+AY RA R ++ + M++ R P K Y +L++ F V +A
Sbjct: 317 YALLIKAYGRAR---REEEALSVFEEMLDAGVR--PTHKAYNILLDAFAISGMVEQAKTV 371
Query: 343 FRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
F++++ ++ + ++ LS Y+ A EG
Sbjct: 372 FKSMRR----DRIFPDLWSYTTMLSAYVNASDMEG 402
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 9/220 (4%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
IYD M + + P S+ L+ AY E A+ + L AGVRP H+ L F
Sbjct: 301 IYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 360
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G+ + + +M ++I D+ ++ ++ V +E A K F R G
Sbjct: 361 ISGMVEQAKTVFKSMRRDRIFPDL-WSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNI 419
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y +I KA D +E+ +M +G A ++ C A ++
Sbjct: 420 VTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKE 479
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
ME + PD + N ++ + A + D +++ EL G+
Sbjct: 480 MESCG--VPPDQKAKNVLL---SLASTQDELEEAKELTGI 514
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 106/281 (37%), Gaps = 51/281 (18%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G S S+ L+ A+ +G + A++ K+ G +P T + +FG G T
Sbjct: 203 GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMG--TPW 260
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+I + +EK+ D G+ Y+ +I
Sbjct: 261 NKITSLVEKMKSD-------------------------------GIAPDAYTYNTLIT-C 288
Query: 219 CKAGD-HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
CK G H A ++ EM+AAG +N LL P+ A ME +
Sbjct: 289 CKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMEL--NGFS 346
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
P TYN +I AY R D + EL M E K +P+V TY L+ F + V
Sbjct: 347 PSIVTYNSLISAYARDGMLD---EAMELKNQMAE--KGTKPDVFTYTTLLSGFERAGKVE 401
Query: 338 EAIRHFRALQN---------YEGGTKVLHNEGNFGDPLSLY 369
A+ F ++N + K+ N G F D + ++
Sbjct: 402 SAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIF 442
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 11/215 (5%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M G P ++ L+ + G E AM+ + +AG +P T A +++G++G
Sbjct: 375 MAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRG- 433
Query: 155 ATKGLEILAAMEKINY-----DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
K ++++ ++IN DI W L+ +N + + VF + G E
Sbjct: 434 --KFVDMMKIFDEINVCGLSPDI-VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERE 490
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ +I+ + G A+ + M AG +N +L+ A G+ E + M
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
E G KP+ TY ++ AY + + +AE
Sbjct: 551 EDGR--CKPNELTYCSLLHAYANGKEIGLMHSLAE 583
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 3/213 (1%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M AAG S +++ L+ Y + + AM L G P T +L +
Sbjct: 301 VFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYA 360
Query: 151 SKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G+ + +E+ M EK + L+ R +E A +F G +
Sbjct: 361 RDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNIC 420
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ I G + ++I E+ G +N LL+ G+ F+ M
Sbjct: 421 TFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
+ P+ ET+N +I AY+R S+++ V
Sbjct: 481 KRAG--FVPERETFNTLISAYSRCGSFEQAMTV 511
Score = 41.2 bits (95), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP----LHETLI 143
V+ V +M AG P +F+ L+ AY+ G E AM +R L AGV P + L
Sbjct: 473 VSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLA 532
Query: 144 ALARLFGSKGLATKGLEILAAME 166
ALAR G+ + ++LA ME
Sbjct: 533 ALAR----GGMWEQSEKVLAEME 551
>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
Length = 796
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 132/304 (43%), Gaps = 41/304 (13%)
Query: 124 MHSLKRELSAGVRP----LHETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLI 178
+HSL+R GVRP + L AL+R L L++ ++ ++ + + +
Sbjct: 158 LHSLRRR--RGVRPSLQAANAVLSALSR--SPSTLPQASLDVFRSLIELRLHPNHYTFNL 213
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LV L DA GL Y+ ++ C+ G A + M+ G
Sbjct: 214 LVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDG 273
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENME-YGEDYMKPDTETYNCVIQAYTRAESYD 297
T +N L+S A G + A E+M YG +PD TYN + +A D
Sbjct: 274 IAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYG---FEPDLRTYNVLAMGLCQAGKVD 330
Query: 298 ---RVQDVAELLGMMVEDHKRLQPNVKTYALLVE-CFTKYCAVTEAIRHFRALQNYE-GG 352
R++D E LG + P+V TY LV+ CF C+ ++A+R +++
Sbjct: 331 EAFRLKDEMERLGTAL-------PDVVTYNTLVDACFKWRCS-SDALRLLEEMRDKGVKP 382
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS 412
T V HN + +++LC+EG++ E L LE +A++ + P + Y TL+
Sbjct: 383 TLVTHN---------IVVKSLCKEGKLEEALGKLEKIAEEG--LAPDVIT----YNTLID 427
Query: 413 SWIE 416
++ +
Sbjct: 428 AYCK 431
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 10/204 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYT---LNGDHEGAMHSLKRELSAGVRPLHETLI-ALARLFG 150
M GLSP +++ L+ A+ + G+ + +KR+ A +P + TL+ A ARL G
Sbjct: 234 MQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARL-G 292
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
ATK +E + A D+R + +L L + +++A ++ + G D +
Sbjct: 293 WIKQATKVVESMTAY-GFEPDLR-TYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVV 350
Query: 211 -YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y+ ++ K S+AL + EM G T N ++ G E A E +
Sbjct: 351 TYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKI 410
Query: 270 EYGEDYMKPDTETYNCVIQAYTRA 293
E+ + PD TYN +I AY +A
Sbjct: 411 --AEEGLAPDVITYNTLIDAYCKA 432
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 95/248 (38%), Gaps = 54/248 (21%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
I+V+ L + LE+A + A+ GL Y+ +I CKAG+ + A + EM
Sbjct: 389 IVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGK 448
Query: 238 GRMATTFHFNHLLSCQATCGI-------------PEVAFATFENMEYG------------ 272
G TF N +L C + P+ F E + YG
Sbjct: 449 GLKMDTFTLNTVL--YNLCKMKRYEDAEELLHSPPQRGFVPDE-VSYGTVMAAYFKEYNP 505
Query: 273 -----------EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
E + P TYN +I+ R E R+++ + L VE K L P+
Sbjct: 506 EPALRLWDQMIERKLIPSISTYNTLIKGLCRME---RLKEAIDKLNEFVE--KGLVPDET 560
Query: 322 TYALLVECFTKYCAVTEAIR-HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 380
TY +++ + K + A R H + ++N V N + LC G++
Sbjct: 561 TYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNT---------LMNGLCLHGKLD 611
Query: 381 ELLEALEA 388
+ L+ E+
Sbjct: 612 KALKLFES 619
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 103/239 (43%), Gaps = 10/239 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ Y++I+ SP P ++ L+ G E AM + +P L F
Sbjct: 879 DLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGF 938
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G G ++ M E I D++ ++ ILVE L ++DA F GL
Sbjct: 939 GKAGNVNIACDLFKRMIKEGIRPDLK-SYTILVECLFMTGRVDDAVHYFEELKLTGLDPD 997
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+LMI K+ AL + EM+ G + +N L+ G+ + A FE
Sbjct: 998 TVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFE 1057
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+++ ++P+ TYN +I+ ++++ + DR V + MM+ PN T+A L
Sbjct: 1058 ELQFMG--LEPNVFTYNALIRGHSKSGNKDRAFSVFK--KMMIVG---CSPNAGTFAQL 1109
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 13/160 (8%)
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
E N++ RG K + ++++I+ K+ + AL++ YE+ + T +
Sbjct: 843 FELYNEMLCRGCKPNIIT----HNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGP 898
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDY-MKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
L+ G E A FE M DY KP+ YN +I + +A V +L
Sbjct: 899 LIGGLLKAGRSEEAMKIFEEMP---DYQCKPNCAIYNILINGFGKA---GNVNIACDLFK 952
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
M+++ R P++K+Y +LVEC V +A+ +F L+
Sbjct: 953 RMIKEGIR--PDLKSYTILVECLFMTGRVDDAVHYFEELK 990
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 90/211 (42%), Gaps = 15/211 (7%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L++ + ++A KV+ R GL+ + + Y ++ + D +++ EME G
Sbjct: 198 LIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLG 257
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ + + G + A+ + ME ++ PD TY +I A A D+
Sbjct: 258 LRPNIYTYTICIRVLGRAGRIDDAYGILKTME--DEGCGPDVVTYTVLIDALCAAGKLDK 315
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
+++ M HK P++ TY L+ F Y E ++ F + +G +
Sbjct: 316 AKELYT--KMRASSHK---PDLVTYITLMSKFGNY-GDLETVKRFWSEMEADGYAPDVVT 369
Query: 359 EGNFGDPLSLYLRALCREGRIIELLEALEAM 389
++ + ALC+ G++ + + L+ M
Sbjct: 370 -------YTILVEALCKSGKVDQAFDMLDVM 393
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 92/240 (38%), Gaps = 10/240 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
MI+ GL P +++ L+VA D M L+ + G+RP T R+ G G
Sbjct: 218 MISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGR 277
Query: 155 ATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
IL M E D+ + +L++ L L+ A +++ + + Y
Sbjct: 278 IDDAYGILKTMEDEGCGPDV-VTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYI 336
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
++++ GD EMEA G + L+ G + AF + M
Sbjct: 337 TLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVR 396
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ P+ TYN +I R+ + EL M + + P +Y L ++ + K
Sbjct: 397 G--IVPNLHTYNTLISGLLNLR---RLDEALELFNNM--ESLGVAPTAYSYVLFIDYYGK 449
Score = 40.8 bits (94), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L+ + L++A ++F G+ T Y L I K GD AL+ +M+ G
Sbjct: 408 LISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRG 467
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
M + N L A G A F ++ + PD+ TYN +++ Y++A D+
Sbjct: 468 IMPSIAACNASLYSLAEMGRIREAKDIFNDIH--NCGLSPDSVTYNMMMKCYSKAGQIDK 525
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE-GGTKVLH 357
+LL M+ + +P++ L++ K V EA + F L++ + T V +
Sbjct: 526 ---ATKLLTEMLSEG--CEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTY 580
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP 395
N + + L +EG++++ L+ +M + P
Sbjct: 581 N---------ILITGLGKEGKLLKALDLFGSMKESGCP 609
Score = 39.3 bits (90), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 108/277 (38%), Gaps = 17/277 (6%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I +E L + + A + DV M G+ P +++ L+ + A+
Sbjct: 372 ILVEALCKSGKVDQAFDMLDV---MRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNM 428
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIR--QAWLILVEELVRN 186
S GV P + + +G G K L+ M+K I I A L + E+ R
Sbjct: 429 ESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGR- 487
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+ +A +F GL Y++M+ KAG A ++ EM + G
Sbjct: 488 --IREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVV 545
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
N L+ G + A+ F ++ + + P TYN +I + ++ +L
Sbjct: 546 NSLIDTLYKAGRVDEAWQMFGRLK--DLKLAPTVVTYNILITGLGKE---GKLLKALDLF 600
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
G M E PN T+ L++C K AV A++ F
Sbjct: 601 GSMKESG--CPPNTVTFNALLDCLCKNDAVDLALKMF 635
>gi|413917008|gb|AFW56940.1| plastid transcriptionally active 12-like protein [Zea mays]
Length = 600
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 114/250 (45%), Gaps = 20/250 (8%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
F LV AY GD A LK G +P ++I+ L + G + + A
Sbjct: 143 FLMLVTAYGKLGDFSRAERVLKYMNKKGYQP---SVISQTGLMEAYGRGKQYRKAEAVFR 199
Query: 167 KINYDIRQ----AWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAEDC 219
++ Q + I+++ LV ++A +F L + + +++ +MI
Sbjct: 200 RMQTSGPQPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYK 259
Query: 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 279
KAGD++ A ++ +M G +T FN L+S + EV+ ++ M+ +KPD
Sbjct: 260 KAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETE--YKEVS-NIYDQMQRAG--LKPD 314
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+Y+ +I+AY +A R ++ + M++ R P K+Y +L++ F V EA
Sbjct: 315 VVSYSLLIKAYGKAR---REEEALAVFEEMLDAGVR--PTRKSYNILLDAFAISGLVEEA 369
Query: 340 IRHFRALQNY 349
FRA++ +
Sbjct: 370 NTVFRAMRRH 379
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 109/273 (39%), Gaps = 14/273 (5%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDH----EGAMHSLKRELSAG 134
+ R + + V M +G P P ++ +++ + GD E L E
Sbjct: 185 YGRGKQYRKAEAVFRRMQTSGPQPSPVTYQ-IILKSLVEGDKYKEAEAIFEDLLNEKRTS 243
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANK 194
+P + + ++ G + ++ A M + + + +Y E +N
Sbjct: 244 FKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSF-ETEYKEVSN- 301
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
++ + + GL+ Y L+I KA AL + EM AG T +N LL A
Sbjct: 302 IYDQMQRAGLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFA 361
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G+ E A F M ++PD +Y ++ AY A + + + + ED
Sbjct: 362 ISGLVEEANTVFRAMR--RHRVEPDLCSYTTMVLAYVNASEMNGAE---KFFRRIKEDG- 415
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
L+PNV Y L++ ++K + + +R + ++
Sbjct: 416 -LKPNVVVYGTLMKGYSKLNNLEKVMRVYERMR 447
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 89/219 (40%), Gaps = 9/219 (4%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
IYD M AGL P S+ L+ AY E A+ + L AGVRP ++ L F
Sbjct: 302 IYDQMQRAGLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFA 361
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
GL + + AM ++ D+ ++ +V V + A K F R + GL+
Sbjct: 362 ISGLVEEANTVFRAMRRHRVEPDL-CSYTTMVLAYVNASEMNGAEKFFRRIKEDGLKPNV 420
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+Y ++ K + + + M G + ++ Q A F+
Sbjct: 421 VVYGTLMKGYSKLNNLEKVMRVYERMRIQGVEPNQTIYTTIMDAQGRNSDFGNAVIWFKE 480
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
ME Y PD + N ++ + A++ + Q+ +L+G
Sbjct: 481 ME-ARGY-PPDQKAKNILL---SLAKTPEEEQEANDLVG 514
>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
Length = 526
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 120/275 (43%), Gaps = 18/275 (6%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
F L+ AY G+ GA L G P + AL +G G I M+
Sbjct: 85 FLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQ 144
Query: 167 KINYDIRQ-AWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAEDCKAG 222
+ + I+++ V ++A +VF L K L+ ++Y +MI KAG
Sbjct: 145 SSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAG 204
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
++ A ++ M G +T +N L+S + + EV+ ++ M+ + ++PD +
Sbjct: 205 NYEKARKVFSSMVGKGVPQSTVTYNSLMSFETS--YKEVS-KIYDQMQRSD--IQPDVVS 259
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRH 342
Y +I+AY RA R ++ + M++ R P K Y +L++ F V +A
Sbjct: 260 YALLIKAYGRAR---REEEALSVFEEMLDAGVR--PTHKAYNILLDAFAISGMVEQAKTV 314
Query: 343 FRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
F++++ ++ + ++ LS Y+ A EG
Sbjct: 315 FKSMRR----DRIFPDLWSYTTMLSAYVNASDMEG 345
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 9/220 (4%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
IYD M + + P S+ L+ AY E A+ + L AGVRP H+ L F
Sbjct: 244 IYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 303
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G+ + + +M ++I D+ ++ ++ V +E A K F R G
Sbjct: 304 ISGMVEQAKTVFKSMRRDRIFPDL-WSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNI 362
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y +I KA D +E+ +M +G A ++ C A ++
Sbjct: 363 VTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKE 422
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
ME + PD + N ++ + A + D +++ EL G+
Sbjct: 423 MESCG--VPPDQKAKNVLL---SLASTQDELEEAKELTGI 457
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 20/242 (8%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
++ + G P ++ L+ + +G E +++ +K G+ P L F +G
Sbjct: 210 EIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREG 269
Query: 154 LATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+E L M + +NY+ A L +N + A ++F + + G
Sbjct: 270 KLDMAIEFLDCMICDGFLPDIVNYNTIMA------ALCKNGNGDHAVEIFGKLDEVGCPP 323
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y+ M++ +GD AL + +M + G +N L+SC G+ + A
Sbjct: 324 NVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLL 383
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+M G +P+ +Y V+ +A R+ D E+L M+E+ QPN TY LL
Sbjct: 384 ADMLSGR--FQPNIVSYKTVLLGLCKAH---RIDDAIEVLAAMIENG--CQPNETTYTLL 436
Query: 327 VE 328
+E
Sbjct: 437 IE 438
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 88/406 (21%), Positives = 150/406 (36%), Gaps = 71/406 (17%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P ++ L+ AY L G + A+ L LS G+ P T + R +G + E
Sbjct: 113 PTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEF 172
Query: 162 LAAMEK-------INYDIR-------------QAWL----------------ILVEELVR 185
+ + I Y+I + W+ IL+ L R
Sbjct: 173 VRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCR 232
Query: 186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH 245
+ +E++ + + GL YD +IA C+ G A+E M G + +
Sbjct: 233 DGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVN 292
Query: 246 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA-YTRAESYDRVQDVAE 304
+N +++ G + A F ++ E P+ +YN ++ A ++ + Y + +++
Sbjct: 293 YNTIMAALCKNGNGDHAVEIFGKLD--EVGCPPNVSSYNTMLSALWSSGDRYRALGMISQ 350
Query: 305 LLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 364
+L K + P+V TY L+ C + V EAI + + G F
Sbjct: 351 ML------SKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLS-----------GRFQP 393
Query: 365 PLSLY---LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEE 421
+ Y L LC+ RI + +E L AM ++ L + S + ++
Sbjct: 394 NIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELA 453
Query: 422 AELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSN 467
L YI ISE K + PL GFIYSN
Sbjct: 454 NSL-----YIMNAISEDSFKRLNKTF-------PLLDVYKGFIYSN 487
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 119/283 (42%), Gaps = 19/283 (6%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG---DHEGAMHSL 127
+ M+ L ++ R +A ++ D M GL P ++ L+ Y G + G + +
Sbjct: 306 LLMDYLCKNGRCMEARKIFD---SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 362
Query: 128 KRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRN 186
R G+ P H L + ++G + + + + M + + + ++ L ++
Sbjct: 363 VRN---GIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKS 419
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+EDA F + GL + +Y+ +I C A E+ EM G T F
Sbjct: 420 GRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFF 479
Query: 247 NHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
N ++ G + FE M G +KP+ TYN +I Y A D + +L
Sbjct: 480 NSIIDSHCKEGRVIESEKLFELMVRIG---VKPNVITYNTLINGYCLAGKMD---EAMKL 533
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
L MV L+PN TY+ L+ + K + +A+ F+ +++
Sbjct: 534 LSGMVS--VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Score = 40.4 bits (93), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ +IA CKA A+E+ M G M +N +L + G P+ A + M
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMR 293
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
D ++PD TY+ ++ + R + ++ M + + L+P + TY L++ +
Sbjct: 294 --SDGVEPDVVTYSLLMDYLCKN---GRCMEARKIFDSMTK--RGLKPEITTYGTLLQGY 346
Query: 331 TKYCAVTE 338
A+ E
Sbjct: 347 ATKGALVE 354
Score = 39.7 bits (91), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 175 AWLILVEELVRNKYLEDANKVFLR-GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A+ L++ L +K DA + LR + G Y++++ C ALE+ +
Sbjct: 124 AFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHM 183
Query: 234 M---EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 290
M G + +++ G + A++T+ M + + PD TYN +I A
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEML--DRGILPDVVTYNSIIAAL 241
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
+A++ D+ E+L MV++ + P+ TY ++ + EAI
Sbjct: 242 CKAQAMDKAM---EVLNTMVKNG--VMPDCMTYNSILHGYCSSGQPKEAI---------- 286
Query: 351 GGTKVLHNEGNFGDPL--SLYLRALCREGRIIELLEALEAMAK 391
G K + ++G D + SL + LC+ GR +E + ++M K
Sbjct: 287 GFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTK 329
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 93/447 (20%), Positives = 164/447 (36%), Gaps = 110/447 (24%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA-GVRPLHETLIALARLFGSK 152
DM+ AGLSP +++ ++ GD E A SL E+ A G+RP T +L +G
Sbjct: 241 DMVVAGLSPSVFTYNMVIGCLAREGDLEAA-RSLFEEMKAKGLRPDIVTYNSLIDGYGKV 299
Query: 153 GLATKGLEILAAMEK-------INYD-----------IRQA------------------W 176
G+ T + + M+ I Y+ I QA +
Sbjct: 300 GMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTY 359
Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
L++ + L +ANK F+ + GL+ + Y +I +CK GD + A ++ EM+
Sbjct: 360 STLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQ 419
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
AG + LL G A F + + + + Y + Y +A+
Sbjct: 420 AGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTL--NQQIYTSLFHGYIKAKMM 477
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 356
++ D+ E + + K L+P++ Y GTK+
Sbjct: 478 EKAMDILEEM-----NKKNLKPDLLLY----------------------------GTKIW 504
Query: 357 HNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW-- 414
LCR+ I + + + M S Y TL+ ++
Sbjct: 505 ---------------GLCRQNEIEDSMAVIREMMDCGLTAN------SYIYTTLIDAYFK 543
Query: 415 -------IEPLQEEAELGYEIDYIARYI-----SEGGLTGERKRWVPRRGKTPLDPDAVG 462
+ LQE +LG +I + + + GL + R+ + L P+ +
Sbjct: 544 VGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIM- 602
Query: 463 FIYSNPMETSFKQRCLEDGKKYHRKLL 489
IY+ ++ K CLE+ K ++L
Sbjct: 603 -IYTALIDGLCKNDCLEEAKNLFNEML 628
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 15/203 (7%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L LV LE+A + F + K + + ++ K+ AL +M AG
Sbjct: 187 LFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAG 246
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ F +N ++ C A G E A + FE M+ ++PD TYN +I Y +
Sbjct: 247 LSPSVFTYNMVIGCLAREGDLEAARSLFEEMK--AKGLRPDIVTYNSLIDGYGKVGMLTG 304
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
V E + +P+V TY L+ CF K+ + +A + ++ V+
Sbjct: 305 AVSVFEEM-----KDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVV-- 357
Query: 359 EGNFGDPLSLYLRALCREGRIIE 381
S + A C+ G ++E
Sbjct: 358 ------TYSTLIDAFCKAGMLLE 374
>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
Length = 703
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 129/320 (40%), Gaps = 18/320 (5%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R A +++ +M GL+P + ++ AY G A+ L+ G +P T
Sbjct: 161 RKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTY 220
Query: 143 IALARLFGSKGLATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
AL + F ++G K + +L M +N D L++ + + + ++E A ++
Sbjct: 221 NALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCI-DGHIESAFRLLRLME 279
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
GL A Y+ +I CK G A + +E G FN L++ G +
Sbjct: 280 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVD 339
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
+A+ E M PDT TY+ I+ + + Q+ +G M++ K ++P+
Sbjct: 340 IAWKFLEKMVSAG--CTPDTYTYSSFIEHLCKMKG---SQEGLSFIGEMLQ--KDVKPST 392
Query: 321 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 380
Y +++ K R + + + V+ + +RA C EGR+
Sbjct: 393 VNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVV--------TYTTSMRAYCIEGRLN 444
Query: 381 ELLEALEAMAKDNQPVPPRA 400
E L M+K+ V A
Sbjct: 445 EAENVLMEMSKNGVTVDTMA 464
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 77/358 (21%), Positives = 147/358 (41%), Gaps = 51/358 (14%)
Query: 85 APRVNDVIYDMIAAGL---------------------SPGPRSFHGLVVAYTLNGDHEGA 123
AP N Y+++ AGL P +++ ++ + GD E
Sbjct: 183 APAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESG 242
Query: 124 MHSLKRELSAGVRP---LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILV 180
+ L G++P + L++ G G L+ +A+ + + + IL
Sbjct: 243 FRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGF--TYSILF 300
Query: 181 EELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
+ R + +F K G++ +++ CK G S A E+ + +G +
Sbjct: 301 DGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLL 360
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
TT +N L++ G E AF+ F+ M+ ++PD TYN +I + E
Sbjct: 361 QTTVIYNTLINGYCQIGDLEGAFSIFQQMK--SRLIRPDHITYNALINGLGKVERITEAH 418
Query: 301 DVAELLGMMVEDHKR-LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 359
D +++E K + P+V+T+ L++ + + + + +Q E G K N
Sbjct: 419 D------LVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQ--EKGLK--PNV 468
Query: 360 GNFGDPLSLYLRALCREGRIIELLEALEAM-AKDNQPVPPRAMILSRKYRTLVSSWIE 416
++G + A C+ G+I+E + L+ M KD V P A + Y ++ ++IE
Sbjct: 469 VSYGS----IVNAFCKNGKILEAVAILDDMFIKD---VLPGAQV----YNAIIDAYIE 515
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 118/293 (40%), Gaps = 25/293 (8%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ +V+ ++ +GL ++ L+ Y GD EGA ++ S +RP H T AL
Sbjct: 346 KAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALI 405
Query: 147 RLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
G T+ +++ MEK +N + + + L++ R LE + + GL
Sbjct: 406 NGLGKVERITEAHDLVIEMEKNGVNPSV-ETFNTLIDAYGRAGQLEKCFIILSDMQEKGL 464
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ Y ++ CK G A+ I +M + +N ++ CG + AF
Sbjct: 465 KPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFM 524
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
E M+ + P TYN +I+ + ++ + ELL + + L P+V +Y
Sbjct: 525 LAEKMK--SSGVPPSIVTYNLLIKGLCKQS---QISEAEELLDSL--RNYGLAPDVISYN 577
Query: 325 LLVE--CFTKY-------------CAVTEAIRHFRALQNYEGGTKVLHNEGNF 362
L+ C+ C + + R +R L + GG +H N
Sbjct: 578 TLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENL 630
>gi|225456802|ref|XP_002275673.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic [Vitis vinifera]
gi|147821419|emb|CAN76897.1| hypothetical protein VITISV_010606 [Vitis vinifera]
Length = 692
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 80/211 (37%), Gaps = 40/211 (18%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D M G+ P S+ L+ AY++ G HE A + + G++P ET AL F
Sbjct: 440 DAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEKAYTAFENMKREGIKPSIETYTALLDAF 499
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G ++I M +KI R + IL++ + + +A V K G + T
Sbjct: 500 RRAGDTQTLMKIWKLMLSDKIE-GTRVTFNILLDGFAKQGHYMEARDVIFEFGKIGFQPT 558
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y++++ + G HS ++ EM +
Sbjct: 559 VMTYNMLMNAYARGGQHSRLPQLLKEMTSLN----------------------------- 589
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+KPD+ TY+ +I AY R + R
Sbjct: 590 --------LKPDSITYSTMIYAYVRVRDFKR 612
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+DA + F R + G++ + E+ +I C G + AL I EME G + +N L
Sbjct: 295 KDAWEFFQRMNRKGVKWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTL 354
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ-DVAELLGM 308
+ + E A F M+ + P + TYN ++ AY+R R+Q ++ E L +
Sbjct: 355 MDAYSKSNRVEEAEGLFGEMK--AKGVMPTSATYNILMDAYSR-----RMQPEIIENLLL 407
Query: 309 MVEDHKRLQPNVKTYALLVECFTK 332
++D L+PNVK+Y L+ + +
Sbjct: 408 EMQDMG-LEPNVKSYTCLISAYGR 430
Score = 42.7 bits (99), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY-EMEA 236
IL++ R E + L GL + Y +I+ + S+ A+ M+
Sbjct: 388 ILMDAYSRRMQPEIIENLLLEMQDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKK 447
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
G T+ + L+ + G E A+ FENM+ + +KP ETY ++ A+ RA
Sbjct: 448 VGIKPTSHSYTALIHAYSVGGWHEKAYTAFENMK--REGIKPSIETYTALLDAFRRAGD- 504
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
Q + ++ +M+ D +++ T+ +L++ F K EA
Sbjct: 505 --TQTLMKIWKLMLSD--KIEGTRVTFNILLDGFAKQGHYMEA 543
>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 576
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 101/245 (41%), Gaps = 20/245 (8%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ DMI G P ++ L+ + +G A+ L+ G+ P L F
Sbjct: 305 LMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFC 364
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWL-------ILVEELVRNKYLEDANKVFLRGAKGG 203
+G ++ A+ ++ I WL ++ L + ++A +F + + G
Sbjct: 365 KEG------KVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVG 418
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
Y+ M +GD AL + EM + G +N L+S G+ + A
Sbjct: 419 CPPNASSYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAI 478
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+ME E +P +YN V+ +A R+ D E+L +MV++ QPN TY
Sbjct: 479 GLLVDMERTE--WQPTVISYNIVLLGLCKAH---RIVDAIEVLAVMVDNG--CQPNETTY 531
Query: 324 ALLVE 328
LLVE
Sbjct: 532 TLLVE 536
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 129/330 (39%), Gaps = 49/330 (14%)
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE 160
+P ++ L+ A ++G + AM L +S G++P T + R +GL + E
Sbjct: 213 NPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDRAFE 272
Query: 161 ILA-------------------------AMEKINYDIRQ--------AWLILVEELVRNK 187
++ A E++ D+ + +L+ L R+
Sbjct: 273 FVSNLNTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDG 332
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+A V + GL YD +I+ CK G A+ +M +AG + ++N
Sbjct: 333 KAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYN 392
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ G + A F+ +E E P+ +YN + A S D+++ + +L
Sbjct: 393 TIMGSLCKKGRADEALNIFKKLE--EVGCPPNASSYNTMFGAL--WSSGDKIRALTMILE 448
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
M+ + P+ TY L+ + V EAI ++ E V+ +
Sbjct: 449 ML---SNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDMERTEWQPTVIS--------YN 497
Query: 368 LYLRALCREGRIIELLEALEAMAKDNQPVP 397
+ L LC+ RI++ +E L M DN P
Sbjct: 498 IVLLGLCKAHRIVDAIEVLAVMV-DNGCQP 526
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 120/298 (40%), Gaps = 18/298 (6%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M G+ P + + +V Y G + A +++ + +G P T L + G
Sbjct: 373 EMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAG 432
Query: 154 LATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ + M + N + L ++ L R K LE+A K+ K G + Y
Sbjct: 433 NMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYG 492
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I K G+ AL++ EM+ + +T +N ++ CG E A + E
Sbjct: 493 TLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLN--ELL 550
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
E + PD TYN ++ Y R V+ + MVE+ +P+V T +L+
Sbjct: 551 ESGLLPDETTYNTILHGYCREGD---VEKAFQFHNKMVENS--FKPDVFTCNILLRGLCM 605
Query: 333 YCAVTEAIRHFRA-LQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+ +A++ F + + V +N + +LC+EGR+ + L M
Sbjct: 606 EGMLEKALKLFNTWVSKGKAIDTVTYNT---------LITSLCKEGRLDDAFNLLSEM 654
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 8/223 (3%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ L + R DA D++ DM + GL P +++ LV Y G + A + ++
Sbjct: 249 ILDALCKKGRLGDA---RDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMT 305
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYL 189
+ P T L ++G + ++ ME + D+ ++ L+ + +
Sbjct: 306 QNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDV-VSYNTLINGCLEWSKI 364
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+A K+ ++ G++ +++M+ CK G +A +ME +G +N L
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTL 424
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
++ G AF T + M G MK D+ T N +++ R
Sbjct: 425 INGYCKAGNMGEAFRTMDEM--GRKNMKMDSVTLNTILRTLCR 465
Score = 40.4 bits (93), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 766 WSQEWEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFG 825
+ +E +VE A Q K++E P + C +++R + LK+ S G
Sbjct: 568 YCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAID 627
Query: 826 SPLYDEII-SLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVITS 870
+ Y+ +I SLC + G LD A ++++ME + T + +IT+
Sbjct: 628 TVTYNTLITSLCKE-GRLDDAFNLLSEMEEKELGPDHYTYNAIITA 672
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 139/341 (40%), Gaps = 55/341 (16%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+VN ++ +MI AG +P F+ L+ Y G+ EGA+ +S + P TL +L
Sbjct: 308 KVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLM 367
Query: 147 RLFGSKG---LATKGL-EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+ F A L EIL++ I+ D + +V L + A +
Sbjct: 368 QGFCKSDQIEHAENALEEILSSGLSIHPDNCYS---VVHWLCKKFRYHSAFRFTKMMLSR 424
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG---IP 259
R +D + +++ CK G H A E+ + + G A+ N L+ CG +P
Sbjct: 425 NFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALI--HGLCGAGKLP 482
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYT---RAESYDRVQDVAELLGMMVEDHKR- 315
E + E +E G + D TYN +I + + E R+++ E KR
Sbjct: 483 EASRIVKEMLERG---LPMDRITYNALILGFCNEGKVEGCFRLRE---------EMTKRG 530
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIR---HFRA-------------LQNYEGGTKVLHNE 359
+QP++ TY L+ + +AI+ F+A ++ Y ++ E
Sbjct: 531 IQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVE 590
Query: 360 GNFGDPLS-----------LYLRALCREGRIIELLEALEAM 389
F + LS + ++A C+ G + L+ LE M
Sbjct: 591 NLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENM 631
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 62/340 (18%), Positives = 130/340 (38%), Gaps = 36/340 (10%)
Query: 86 PRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA-GVRPLHETLIA 144
P + ++ +M+ GL +++ L++ + G EG L+ E++ G++P T
Sbjct: 482 PEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFR-LREEMTKRGIQPDIYTYNF 540
Query: 145 LARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGG 203
L R + G +++ + + I++E + +ED +F
Sbjct: 541 LLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKK 600
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
+ +Y+++I C+ G+ + AL++ M++ G + ++ L+ G+ E A
Sbjct: 601 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAK 660
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVEDHKRLQPNVKT 322
+ M ++ P+ Y +I Y + D + E++ + PN T
Sbjct: 661 HLIDEMR--KEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISF------NIHPNKFT 712
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL---HNEGNFGDPLS--LYLRALCREG 377
Y ++++ + K L N E +L G D ++ + C+
Sbjct: 713 YTVMIDGYCK-------------LGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKAN 759
Query: 378 RIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP 417
+ + + MA + PV Y TLV W P
Sbjct: 760 DMDNAFKVCDQMATEGLPVD------EITYTTLVHGWNPP 793
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 37/242 (15%)
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL--MIAEDCKAGDHSNALEIAYEMEAA 237
+ LV+ E +VF ++G A +++ +I CK G NA+E+ +ME
Sbjct: 193 LSSLVKANEFEKCCEVFRVMSEG---ACPDVFSFTNVINALCKGGKMENAIELFMKMEKL 249
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G +N +++ G + AF E M ++P+ +TY +I + +D
Sbjct: 250 GISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKG--VQPNLKTYGALINGLIKLNFFD 307
Query: 298 RVQDVA-ELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK-- 354
+V + E++G PNV + L++ + K + N EG K
Sbjct: 308 KVNHILDEMIG------AGFNPNVVVFNNLIDGYCK-------------MGNIEGALKIK 348
Query: 355 -VLHNEGNFGDPLSLY--LRALCREGRIIELLEALEAMAKDNQPVPPRAMI-----LSRK 406
V+ ++ ++LY ++ C+ +I ALE + + P L +K
Sbjct: 349 DVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKK 408
Query: 407 YR 408
+R
Sbjct: 409 FR 410
>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
Length = 467
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 1/145 (0%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M AAG P +++ L+ + D A +L G+ P T L F +
Sbjct: 204 MKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENH 263
Query: 155 ATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
K EILA MEK ++ + +LV L ++DA K+F + G+ ++ IYD+
Sbjct: 264 MGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDM 323
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAG 238
MI + G AL++ EM G
Sbjct: 324 MIYGYGREGSSYKALKLIMEMRQKG 348
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 37/186 (19%)
Query: 195 VFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
+ RG K G A D ++ CK GD + A + EM G + L+
Sbjct: 24 MLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGY 83
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ------------- 300
T G E FA FE M G ++P+ TYNC+I + R ++R +
Sbjct: 84 FTHGQREKGFALFEEMRRGG--VEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVR 141
Query: 301 -------------------DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
D A+LL MM + R P++ T+ LLV+ + K ++ A+
Sbjct: 142 NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTR--PSIITFNLLVDGYGKAGKMSNALP 199
Query: 342 HFRALQ 347
F ++
Sbjct: 200 FFNQMK 205
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 10/269 (3%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ D V +M GL+P ++ L+ Y +G E + GV P
Sbjct: 49 CKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNL 108
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFL 197
T L + G + + M + +R ++ L+ L R+ L DA K+
Sbjct: 109 YTYNCLIGEWCRTGEFERARSLFDEM-PVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLD 167
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
G R + ++L++ KAG SNAL +M+AAG + +N L++ C
Sbjct: 168 MMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIA--GFCR 225
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
++ A + E ++P TY +I ++ R + ++ L GM + L+
Sbjct: 226 ARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEI--LAGM---EKAGLE 280
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ TY +LV + +A + F+++
Sbjct: 281 VDAHTYGVLVRALCMEGNMKDARKLFQSM 309
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 22/255 (8%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK-- 157
+P R F L+ + G A H L + AG P ++ L G A K
Sbjct: 265 FNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEP---DIVVYNNLLGGYAQAGKMR 321
Query: 158 -GLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
++LA M+K+N A + IL++ + + +++A ++F G A Y +I
Sbjct: 322 DAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLI 381
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
+ CK G+ A EI +M G + + ++ E E ME E+
Sbjct: 382 SGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAH------EKKEELEECMELIEEM 435
Query: 276 MK----PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
K PD YN +I+ + +++ L G M L P + TY L+V F
Sbjct: 436 RKIGCVPDLNIYNTMIRLVCKLGD---LKEAVRLWGEM--QAGGLNPGLDTYILMVHGFL 490
Query: 332 KYCAVTEAIRHFRAL 346
+ EA +F+ +
Sbjct: 491 SQGCLVEACDYFKEM 505
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 106/255 (41%), Gaps = 10/255 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P + + LV L+G AM + + + G +P T + + G
Sbjct: 282 MVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQ 341
Query: 155 ATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+E+L ME+ N + + I+++ L ++ L++A +F G+ Y++
Sbjct: 342 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNI 401
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFENMEYG 272
+I C AG + ++ +M F+ L+ G + E E + G
Sbjct: 402 LIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRG 461
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ PDT TY +I + + D+ + +L MV K PN++T+ +L+ + K
Sbjct: 462 ---IAPDTITYTSLIDGFCKENHLDKANQMVDL---MVS--KGCDPNIRTFNILINGYCK 513
Query: 333 YCAVTEAIRHFRALQ 347
+ + + FR +
Sbjct: 514 ANRIDDGLELFRKMS 528
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 107/258 (41%), Gaps = 8/258 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ DMI ++P +F L+ ++ G A K + G+ P T +L F
Sbjct: 418 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC 477
Query: 151 SKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+ K +++ M D + + IL+ + ++D ++F + + G+ A
Sbjct: 478 KENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTV 537
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y+ +I C+ G + A E+ EM + + LL G E A FE +
Sbjct: 538 TYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 597
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
E + M+ D YN +I A D D+ L + K ++P VKTY +++
Sbjct: 598 EKSK--MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL-----KGVKPGVKTYNIMIGG 650
Query: 330 FTKYCAVTEAIRHFRALQ 347
K ++EA FR ++
Sbjct: 651 LCKKGPLSEAELLFRKME 668
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 5/206 (2%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ N ++ M++ G P R+F+ L+ Y + + ++ GV T L
Sbjct: 484 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 543
Query: 147 RLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
+ F G E+ M K+ +I + IL++ L N E A ++F + K +
Sbjct: 544 QGFCELGKLNVAKELFQEMVSRKVPPNI-VTYKILLDGLCDNGESEKALEIFEKIEKSKM 602
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
IY+++I C A +A ++ + G +N ++ G A
Sbjct: 603 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAEL 662
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAY 290
F ME ED PD TYN +I+A+
Sbjct: 663 LFRKME--EDGHAPDGWTYNILIRAH 686
>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Brachypodium distachyon]
Length = 410
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 122/267 (45%), Gaps = 17/267 (6%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
+A RV DV M GL+P +F L+ Y ++G E + ++ G+ P T
Sbjct: 56 EAQRVFDV---MPRLGLTPNEVTFTALIHGYFIHGRREKGLALFEKMRIGGIEPNLYTYN 112
Query: 144 ALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
L + G + + M + I ++ ++ L+ L R + ++DA ++ +
Sbjct: 113 ILVGEWCRTGEFERARLLFEEMPAKGITRNV-VSYNTLIAGLCRYRKMKDATQLLELMRR 171
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS--CQATCGIP 259
G+R + ++L++ KAG SNAL + +M AG + +N L++ C+A I
Sbjct: 172 EGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFCRARDMIR 231
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
A F +M+ E + P TY +I A+ R D+ ++ GM + L+ +
Sbjct: 232 --ANRAFSDMK--ERGLAPTKVTYTILIDAFARENDMDKAFEM--FAGM---EKAGLEVD 282
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRAL 346
V+TY +LV + +A + F+++
Sbjct: 283 VRTYGVLVHALCMEGNMKDARKLFQSI 309
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M AG P +++ L+ + D A + G+ P T L F +
Sbjct: 204 MRMAGYQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFAREND 263
Query: 155 ATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
K E+ A MEK + D+R + +LV L ++DA K+F + GL+ + IYD
Sbjct: 264 MDKAFEMFAGMEKAGLEVDVR-TYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYD 322
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAG 238
++I + G A+++ EM G
Sbjct: 323 MLIYGYGREGSSYKAMKLIMEMRKKG 348
>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 628
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 14/249 (5%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK---G 158
P + F L+ + G A H L + AG+ P ++ L G A K
Sbjct: 233 PSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIEP---DIVVYNNLLGGYAQADKMGDA 289
Query: 159 LEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
++L M + + ++ +L++ L +++ LE+A +VF+ + G +A Y +I+
Sbjct: 290 YDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLISG 349
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
CK G E+ EM G + H++ E M+ +
Sbjct: 350 FCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVNEMQ--KIGCA 407
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
PD YN VI+ A V++ L M + L P++ T+ +++ F + +
Sbjct: 408 PDLSIYNTVIRL---ACKLGEVKEGVRLWNEM--ESSGLSPSIDTFVIMINGFLEQGCLV 462
Query: 338 EAIRHFRAL 346
EA +F+ +
Sbjct: 463 EACEYFKEM 471
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 121/304 (39%), Gaps = 55/304 (18%)
Query: 93 YDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSK 152
+ M+A GL P +++ L+ + G E A K LS G P +T + + F
Sbjct: 366 HKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLM 425
Query: 153 GLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
G DI++A +I F + K G Y+
Sbjct: 426 G-----------------DIQKAMVI-----------------FDKMLKAGSSPNVITYN 451
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN-MEY 271
+I CK G+ +NA+ + M+ G + + L+S + G E A + F ME+
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
G + P+ TY +I Y +V D L MVE P+ +TY +++ F+
Sbjct: 512 G---ISPNHVTYTAIIDGYFNLA---KVDDALALFWKMVESGNL--PSSQTYNVMISGFS 563
Query: 332 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAM 389
K +++EA +N+ G + +G + ++ ++ LCR GR + M
Sbjct: 564 KTNSISEA-------ENFCGK---MVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613
Query: 390 AKDN 393
K N
Sbjct: 614 EKRN 617
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 91 VIYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
VI+D M+ AG SP +++ L+ Y G+ AM L+ G++P T L F
Sbjct: 433 VIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492
Query: 150 GSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G + M + + +++ ++DA +F + + G +
Sbjct: 493 SRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSS 552
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+ Y++MI+ K S A +M G + + + G +AF F
Sbjct: 553 QTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHE 612
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLV 327
ME +Y P+ TY+ +I + R +D AE+ ++ H +PNV TY LV
Sbjct: 613 ME-KRNYF-PNLYTYSSLIYGLCQE---GRAED-AEMYNLLARLTHYGCEPNVDTYTTLV 666
Query: 328 E 328
+
Sbjct: 667 K 667
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 17/212 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L LE+A + + G+ T Y + + C AG S A+E+ +M+ G
Sbjct: 278 LINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRG 337
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ F L+S + G E+A + M D + P T TYN +I R
Sbjct: 338 CVPNIQTFTALISGLSRDGKFEIAIGLYHKML--ADGLVPTTVTYNALINQLCVE---GR 392
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF-RALQNYEGGTKVLH 357
+ + M+ H L P+ +TY +++CF + +A+ F + L+ + +
Sbjct: 393 FETAFTIFKWML-SHGSL-PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITY 450
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
N +G C++G + + LE M
Sbjct: 451 NTLIYG---------YCKQGNLNNAMRLLEIM 473
>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
Length = 487
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 100/249 (40%), Gaps = 42/249 (16%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R + P++ +V DM+AAG P ++ +V A G E A+ ++ S G +P
Sbjct: 218 GRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTT 277
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
L +G D+R +EDA FL
Sbjct: 278 FIYSVLVHTYG-------------------VDMR---------------IEDAVATFLDM 303
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
K G+ +Y+ ++ CK NA + +ME G + +N +L+ + G
Sbjct: 304 EKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKD 363
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
+ A+ F NM KPD++TY +I+ + + + V + + + K+ P+
Sbjct: 364 DEAYRVFRNM---IKRCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRL-----KQFLPS 415
Query: 320 VKTYALLVE 328
+ T+++L+
Sbjct: 416 MHTFSVLIN 424
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 13/176 (7%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + IL+E R L +V+ G + Y +M+ CK G A+ + +
Sbjct: 208 KTYSILLEGWGRAPNLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQD 267
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M + G TTF ++ L+ E A ATF +ME +D + PD YN ++ A+ +
Sbjct: 268 MSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDME--KDGIVPDVVVYNALVTAFCKV 325
Query: 294 ESYD---RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ +D RV D E G + PN +T+ +++ EA R FR +
Sbjct: 326 KKFDNAFRVMDDMEGHG--------ISPNSRTWNIILNTLISLGKDDEAYRVFRNM 373
>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/317 (19%), Positives = 132/317 (41%), Gaps = 26/317 (8%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ D RV ++ +M G P +++ ++ L G + A+ L R +++ P
Sbjct: 269 CKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPND 328
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T L +G + G+ +L+++E+ + + A+ L+ L + + E+A ++ +
Sbjct: 329 VTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKK 388
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+ G + +Y +I C+ G A EI EM G F ++ L+ G
Sbjct: 389 MVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGN 448
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH---KR 315
+ A ++ M ++ P+ Y+ +I +D MM+ H +
Sbjct: 449 SQKAIRVWKEM--AKNNCVPNEICYSVLIHGLC--------EDGKLREAMMMWTHMLGRG 498
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRA 372
L+P+V Y+ ++ +V ++ F + E ++ V +N + LRA
Sbjct: 499 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYN---------ILLRA 549
Query: 373 LCREGRIIELLEALEAM 389
LC++ I ++ L +M
Sbjct: 550 LCKQNSISHAIDLLNSM 566
>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
Length = 621
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 113/270 (41%), Gaps = 24/270 (8%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIAL 145
+VN+V+Y + GL G + A +++ +S G P H +
Sbjct: 349 KVNEVVYTSLIDGLCK--------------TGKIDAADELMQKMISEGFVPDAHSYSSLI 394
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
L K L+ L + MEK + I+++ELVR E K+F + G+
Sbjct: 395 DGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGIN 454
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y + + C+ G +A + +M G +N L+ A G+ AF+T
Sbjct: 455 PDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFST 514
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL-----LGMMVED--HKRLQP 318
FE M G+ + KP+ ++Y +++ + S D D+ ++ L +++ED ++L
Sbjct: 515 FEVM-VGKGW-KPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPL 572
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQN 348
Y+ + C + + EA F +QN
Sbjct: 573 AADIYSCFIRCLCRVDRLEEAKHFFMGMQN 602
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 146/366 (39%), Gaps = 34/366 (9%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
LM AR+R P + + M A L R++ L+ AY L GD A L L AG+
Sbjct: 48 LMALARHRMFPDMESLASRMPARNL----RTYTTLINAYCLAGDIPAAKQHLTSLLHAGL 103
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA--WLILVEELVRNKYLEDAN 193
P + + G+ T + M + +R A + L+ L+ + +A
Sbjct: 104 APDSYAYTSFVLGYCRAGMLTHACRVFVLM-PLRGCLRTAFTYTALLHGLLGAGMVREAM 162
Query: 194 KVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
VF+ G + A D +Y M+ C+AG A + E + G +N L+
Sbjct: 163 TVFV-GMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDG 221
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G E A FE M+ + P+ TY +I ++ +V+ L MVE
Sbjct: 222 YCNAGEMEHALKVFEGMD--GNRCSPNVRTYTELIHGLCKS---GKVERAMVLFSRMVE- 275
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 372
L+PNV TY L++ C FR L E ++ N+ F S+ + A
Sbjct: 276 -AGLEPNVVTYTALIQ---GQCNEGHLQCAFRLLHLME-TNGLVPNDWTF----SVLIDA 326
Query: 373 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIA 432
LC+ ++ E L ++ K V + +S I+ L + ++ + +
Sbjct: 327 LCKREKVEEAQLFLGSLVKKGVKVN----------EVVYTSLIDGLCKTGKIDAADELMQ 376
Query: 433 RYISEG 438
+ ISEG
Sbjct: 377 KMISEG 382
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 111/283 (39%), Gaps = 45/283 (15%)
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE 160
SP R++ L+ +G E AM R + AG+ P T AL + ++G
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFR 303
Query: 161 ILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L ME N + W +L++ L + + +E+A K G++ + +Y +I
Sbjct: 304 LLHLMET-NGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGL 362
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF---ENMEYG--- 272
CK G A E+ +M + G + ++ L+ C +++ AT + ME G
Sbjct: 363 CKTGKIDAADELMQKMISEGFVPDAHSYSSLI--DGLCRQKKLSQATLMLEDMMEKGIQA 420
Query: 273 -----------------------------EDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303
+ PD TY +++Y R++D
Sbjct: 421 SPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEE---GRMEDAE 477
Query: 304 ELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
++ MV+ + + PN+ TY L+ + V++A F +
Sbjct: 478 SMIVQMVD--RGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVM 518
>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
Length = 973
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 119/277 (42%), Gaps = 17/277 (6%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L++ +R+A V V M+ G+ P R++ L+VA+ D E + L+ + GV
Sbjct: 205 LVKSGFDREALEVYRV---MMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGV 261
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDAN 193
+P + R+ G + ILA ME D+ +L++ L + DA
Sbjct: 262 KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDV-ITHTVLIQVLCDAGRISDAK 320
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
VF + K + Y ++ + GD + +EI M+A G + ++
Sbjct: 321 DVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVI--D 378
Query: 254 ATCGIPEV--AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
A C + V A F+ M+ + + P+ +YN +I + +A DR D EL M
Sbjct: 379 ALCQVGRVFEALEMFDEMK--QKGIVPEQYSYNSLISGFLKA---DRFGDALELFKHM-- 431
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
D +PN T+ L + + K +AI+ + +++
Sbjct: 432 DIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKS 468
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 73 MEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEG-AMHSLKREL 131
++ L Q R +A + D +M G+ P S++ L+ + L D G A+ K
Sbjct: 377 IDALCQVGRVFEALEMFD---EMKQKGIVPEQYSYNSLISGF-LKADRFGDALELFKHMD 432
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYL 189
G +P T + +G G + K ++ M+ I D+ +L L ++ L
Sbjct: 433 IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFG-LAKSGRL 491
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
A +VF G+ Y +MI KA A++I Y+M + N L
Sbjct: 492 GMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSL 551
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G + A+ F ++ E ++P TYN ++ R +V++V LL M
Sbjct: 552 IDTLYKAGRGDEAWRIFYQLK--EMNLEPTDGTYNTLLAGLGRE---GKVKEVMHLLEEM 606
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
H PN+ TY +++C K AV +A+
Sbjct: 607 Y--HSNYPPNLITYNTILDCLCKNGAVNDAL 635
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 114/289 (39%), Gaps = 37/289 (12%)
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANK 194
+P T I L FG G + +EI AM+ Y D A+ +++ L + + +A +
Sbjct: 332 KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALE 391
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+F + G+ Y+ +I+ KA +ALE+ M+ G + ++
Sbjct: 392 MFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYG 451
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G A +E M+ + PD N V+ ++ + V L M
Sbjct: 452 KSGESIKAIQRYELMK--SKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM----- 504
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFR-ALQN----------------YEGG----- 352
+ P+ TY ++++C +K EA++ F ++N Y+ G
Sbjct: 505 GVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEA 564
Query: 353 ------TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP 395
K ++ E G +L L L REG++ E++ LE M N P
Sbjct: 565 WRIFYQLKEMNLEPTDGTYNTL-LAGLGREGKVKEVMHLLEEMYHSNYP 612
>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74850, chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
Length = 862
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 112/263 (42%), Gaps = 10/263 (3%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R +V D++ +M + G P S++ L+ AY +G + AM + +AG P T
Sbjct: 296 RRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTY 355
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAK 201
L LFG G ++ M+ N D A + IL+E Y ++ +F +
Sbjct: 356 SVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE 415
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
+ E Y+ +I K G H +A +I M A + ++ + ++ + E
Sbjct: 416 ENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEE 475
Query: 262 AFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
A F M E G + P ET++ ++ ++ R V++ +L +V+ + N
Sbjct: 476 ALVAFNTMHEVGSN---PSIETFHSLLYSFARG---GLVKESEAILSRLVDSG--IPRNR 527
Query: 321 KTYALLVECFTKYCAVTEAIRHF 343
T+ +E + + EA++ +
Sbjct: 528 DTFNAQIEAYKQGGKFEEAVKTY 550
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ + IY +MI+ + G LE+ EM + G + F + L++ G E +
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLE 197
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTY 323
+ M+ + + P TYN VI A R D LLG+ E H+ +QP++ TY
Sbjct: 198 LLDRMK--NEKISPSILTYNTVINACARGG-----LDWEGLLGLFAEMRHEGIQPDIVTY 250
Query: 324 ALLVECFTKYCAV 336
L+ CA+
Sbjct: 251 NTLLSA----CAI 259
Score = 42.7 bits (99), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 99/234 (42%), Gaps = 12/234 (5%)
Query: 100 LSPGPRSFHGLVVAYTLNG-DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
+SP +++ ++ A G D EG + G++P T L +GL +
Sbjct: 207 ISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEA 266
Query: 159 LEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+ M I D+ + LVE + + LE + A GG Y++++
Sbjct: 267 EMVFRTMNDGGIVPDL-TTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLE 325
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
K+G A+ + ++M+AAG ++ LL+ G + F +E
Sbjct: 326 AYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF--LEMKSSNT 383
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY-ALLVEC 329
PD TYN +I+ + + ++V L MVE++ ++P+++TY ++ C
Sbjct: 384 DPDAATYNILIEVFGEGGYF---KEVVTLFHDMVEEN--IEPDMETYEGIIFAC 432
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 19/283 (6%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG---DHEGAMHSL 127
+ M+ L ++ R +A ++ D M GL P ++ L+ Y G + G + +
Sbjct: 306 LLMDYLCKNGRCMEARKIFD---SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 362
Query: 128 KRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRN 186
R G+ P H L + +G + + + + M + + + ++ L ++
Sbjct: 363 VRN---GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKS 419
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+EDA F + GL + +Y+ +I C A E+ EM G T F
Sbjct: 420 GRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFF 479
Query: 247 NHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
N ++ G + FE M G +KP+ TYN +I Y A D + +L
Sbjct: 480 NSIIDSHCKEGRVIESEKLFELMVRIG---VKPNVITYNTLINGYCLAGKMD---EAMKL 533
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
L MV L+PN TY+ L+ + K + +A+ F+ +++
Sbjct: 534 LSGMVS--VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Score = 40.4 bits (93), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ +IA CKA A+E+ M G M +N +L + G P+ A + M
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMR 293
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
D ++PD TY+ ++ + R + ++ M + + L+P + TY L++ +
Sbjct: 294 --SDGVEPDVVTYSLLMDYLCKN---GRCMEARKIFDSMTK--RGLKPEITTYGTLLQGY 346
Query: 331 TKYCAVTE 338
A+ E
Sbjct: 347 ATKGALVE 354
Score = 39.7 bits (91), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 175 AWLILVEELVRNKYLEDANKVFLR-GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A+ L++ L +K DA + LR + G Y++++ C ALE+ +
Sbjct: 124 AFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHM 183
Query: 234 M---EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 290
M G + +++ G + A++T+ M + + PD TYN +I A
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEML--DRGILPDVVTYNSIIAAL 241
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
+A++ D+ E+L MV++ + P+ TY ++ + EAI
Sbjct: 242 CKAQAMDKAM---EVLNTMVKNG--VMPDCMTYNSILHGYCSSGQPKEAI---------- 286
Query: 351 GGTKVLHNEGNFGDPL--SLYLRALCREGRIIELLEALEAMAK 391
G K + ++G D + SL + LC+ GR +E + ++M K
Sbjct: 287 GFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTK 329
>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 88/217 (40%), Gaps = 6/217 (2%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
IYD M +G+ P S+ L+ AY E A+ + L AGVRP H+ L F
Sbjct: 301 IYDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 360
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G+ + + +M ++I D+ ++ ++ V +E A K F R G
Sbjct: 361 ISGMVEQAKTVFKSMRRDRIFPDL-WSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNI 419
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y MI KA D +E+ +M +G A ++ C A ++
Sbjct: 420 VTYGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKDFGSALGWYKE 479
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
ME + PD + N ++ Y+ + D +++ L
Sbjct: 480 MESCG--VPPDQKAKNVLLSLYSTQDELDEAKELTGL 514
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 118/275 (42%), Gaps = 18/275 (6%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
F L+ AY G+ GA L G P + AL +G G I M+
Sbjct: 142 FLMLITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAEAIFRRMQ 201
Query: 167 KINYDIRQA-WLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAEDCKAG 222
+ + I+++ V ++A +VF L K L+ ++Y +MI KAG
Sbjct: 202 SSGPEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAG 261
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
++ A ++ M G +T +N L+S + EV+ ++ M+ ++PD +
Sbjct: 262 NYDKARKVFSSMVGKGVPQSTVTYNSLMSFETN--YKEVS-KIYDQMQ--RSGIQPDVVS 316
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRH 342
Y +I+AY RA R ++ + M++ R P K Y +L++ F V +A
Sbjct: 317 YALLIKAYGRAR---REEEALSVFEEMLDAGVR--PTHKAYNILLDAFAISGMVEQAKTV 371
Query: 343 FRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
F++++ ++ + ++ LS Y+ A EG
Sbjct: 372 FKSMRR----DRIFPDLWSYTTMLSAYVNASDMEG 402
>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 30/235 (12%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y ++ CK GD AL + +MEAA A FN ++ EVA F ME
Sbjct: 226 YGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEME 285
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
++P+ TYN +I +Y R D + LL M+E K++ PNV T+ L++ F
Sbjct: 286 --TKGIRPNVVTYNSLINCLC---NYGRWSDASRLLSNMLE--KKINPNVVTFNALIDAF 338
Query: 331 TKYCAVTEAIR-HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
K + EA + H +Q + +N L + C R+ E + + M
Sbjct: 339 FKEGKLVEAEKLHEEMIQRSIDPDTITYN---------LLINGFCMHNRLDEAKQMFKFM 389
Query: 390 -AKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGE 443
+KD P + Y TL++ + + + E G E + R +S+ GL G
Sbjct: 390 VSKDCLPNI-------QTYNTLINGFCKC--KRVEDGVE---LFREMSQRGLVGN 432
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 38/177 (21%)
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
++A I++ +I CK A+++ EME G +N L++C G A
Sbjct: 254 IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDAS 313
Query: 264 ATFENM---------------------------------EYGEDYMKPDTETYNCVIQAY 290
NM E + + PDT TYN +I +
Sbjct: 314 RLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGF 373
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
++R+ + ++ MV K PN++TY L+ F K V + + FR +
Sbjct: 374 CM---HNRLDEAKQMFKFMVS--KDCLPNIQTYNTLINGFCKCKRVEDGVELFREMS 425
>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Vitis vinifera]
Length = 644
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/317 (19%), Positives = 132/317 (41%), Gaps = 26/317 (8%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ D RV ++ +M G P +++ ++ L G + A+ L R +++ P
Sbjct: 253 CKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPND 312
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T L +G + G+ +L+++E+ + + A+ L+ L + + E+A ++ +
Sbjct: 313 VTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKK 372
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+ G + +Y +I C+ G A EI EM G F ++ L+ G
Sbjct: 373 MVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGN 432
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH---KR 315
+ A ++ M ++ P+ Y+ +I +D MM+ H +
Sbjct: 433 SQKAIRVWKEM--AKNNCVPNEICYSVLIHGLC--------EDGKLREAMMMWTHMLGRG 482
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRA 372
L+P+V Y+ ++ +V ++ F + E ++ V +N + LRA
Sbjct: 483 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYN---------ILLRA 533
Query: 373 LCREGRIIELLEALEAM 389
LC++ I ++ L +M
Sbjct: 534 LCKQNSISHAIDLLNSM 550
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 121/304 (39%), Gaps = 55/304 (18%)
Query: 93 YDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSK 152
+ M+A GL P +++ L+ + G E A K LS G P +T + + F
Sbjct: 366 HKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLM 425
Query: 153 GLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
G DI++A +I F + K G Y+
Sbjct: 426 G-----------------DIQKAMVI-----------------FDKMLKAGSSPNVITYN 451
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN-MEY 271
+I CK G+ +NA+ + M+ G + + L+S + G E A + F ME+
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
G + P+ TY +I Y +V D L MVE P+ +TY +++ F+
Sbjct: 512 G---ISPNHVTYTAIIDGYFNLA---KVDDALALFWKMVESGNL--PSSQTYNVMISGFS 563
Query: 332 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAM 389
K +++EA +N+ G + +G + ++ ++ LCR GR + M
Sbjct: 564 KTNSISEA-------ENFCGK---MVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613
Query: 390 AKDN 393
K N
Sbjct: 614 EKRN 617
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 9/241 (3%)
Query: 91 VIYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
VI+D M+ AG SP +++ L+ Y G+ AM L+ G++P T L F
Sbjct: 433 VIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492
Query: 150 GSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G + M + + +++ ++DA +F + + G +
Sbjct: 493 SRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSS 552
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+ Y++MI+ K S A +M G + + + G +AF F
Sbjct: 553 QTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHE 612
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLV 327
ME +Y P+ TY+ +I + R +D AE+ ++ H +PNV TY LV
Sbjct: 613 ME-KRNYF-PNLYTYSSLIYGLCQE---GRAED-AEMYNLLARLTHYGCEPNVDTYTTLV 666
Query: 328 E 328
+
Sbjct: 667 K 667
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 17/212 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L LE+A + + G+ T Y + + C AG S A+E+ +M+ G
Sbjct: 278 LINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRG 337
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ F L+S + G E+A + M D + P T TYN +I R
Sbjct: 338 CVPNIQTFTALISGLSRDGKFEIAIGLYHKML--ADGLVPTTVTYNALINQLCVE---GR 392
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF-RALQNYEGGTKVLH 357
+ + M+ H L P+ +TY +++CF + +A+ F + L+ + +
Sbjct: 393 FETAFTIFKWML-SHGSL-PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITY 450
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
N +G C++G + + LE M
Sbjct: 451 NTLIYG---------YCKQGNLNNAMRLLEIM 473
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 134/353 (37%), Gaps = 37/353 (10%)
Query: 55 STNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAY 114
S+ G + A G R + R DA D+ +M+ + P F L+ A
Sbjct: 19 SSGGGASARAYSGYREKLRTGFLHSIRFEDAL---DLFLEMVQSQPLPSVVDFTRLLTAI 75
Query: 115 TLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD--I 172
+E ++ ++ G+ + L F + L IL M K+ YD I
Sbjct: 76 ANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSI 135
Query: 173 RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
+L +RN+ + DA + K G +Y+ +I CK GD + ALE+
Sbjct: 136 VTFGSLLHGFCLRNR-IHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLN 194
Query: 233 EMEAAGRMATTF-HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 291
EME GR+A +N LL+ G A +M + + PD T+ +I A+
Sbjct: 195 EMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMT--KRRINPDVFTFTALIDAFV 252
Query: 292 RAESYDRVQDVAELLGMMVED------------------HKRLQPNVKTYALLVE--CFT 331
+ + D Q EL M++ H RL KT+ L+ CF
Sbjct: 253 KQGNLDEAQ---ELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFP 309
Query: 332 KYCAVTEAIRHFRALQNYEGGTKV---LHNEGNFGDPLSL--YLRALCREGRI 379
I F + E G K+ ++ EG GD + + C+ G++
Sbjct: 310 NVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKL 362
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 124/288 (43%), Gaps = 23/288 (7%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LH 139
R A R+ + DM ++P +F L+ A+ G+ + A K+ L + + P +
Sbjct: 223 RQAARI---LRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTY 279
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
+LI + G A K +++A+ K + + L+ +++ +ED K+F R
Sbjct: 280 NSLINGLCMHGRLYHAKKTFDLMAS--KGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRM 337
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
+ GL Y+ +I C+ G A +I M + G T H + C
Sbjct: 338 YREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCG--VTPDIITHCILLHGLCVNG 395
Query: 260 EV--AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM-VEDHKRL 316
E+ A F +M GE Y+ YN +I +A D+V++ EL + VE +
Sbjct: 396 EIGSAMVKFNDMRSGEKYL--GIVAYNIMIHGLCKA---DKVEEAWELFCRLPVEG---V 447
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 364
+P+ +TY +++ K EA FR ++ E G +G+ G+
Sbjct: 448 KPDARTYTIMILGLCKNGPRREADELFRRMK--EDGIICQAEDGHLGE 493
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 6/224 (2%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
+ L R DA R+ + DM+ + P F L+ + G+ A + K +
Sbjct: 761 LISGLCNSGRWTDAARL---LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMI 817
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLE 190
V P T +L F +G + M K + + L+ ++K +E
Sbjct: 818 RRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVE 877
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
D K+F GL Y+ +I C+AG + A ++ M G +N LL
Sbjct: 878 DGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILL 937
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
C G E A E+++ ++ M D TYN +IQ R +
Sbjct: 938 DCLCNNGKIEKALVMVEDLQ--KNQMDVDIITYNIIIQGMCRND 979
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 112/299 (37%), Gaps = 66/299 (22%)
Query: 159 LEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
L +L M K+ + L L+ + ++A + A+ GL IY+ +I
Sbjct: 670 LALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVING 729
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI-----------------PE 260
CK D +NALEI Y ME G +A +N L+S G P
Sbjct: 730 LCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPN 789
Query: 261 VAFATF--------ENMEYGEDYMK--------PDTETYNCVIQAYTRAESYDRVQDVAE 304
V F T N+ ++ K P+ TYN +I + R+ D
Sbjct: 790 VIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQ---GRLGDAKH 846
Query: 305 LLGMMVEDHKRLQPNVKTYALLVECFTK----------YCAVT------EAIRHFRALQN 348
+ +MV K P+V TY L+ F K +C +T +A + +
Sbjct: 847 MFDLMVS--KGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHG 904
Query: 349 Y-EGGT-----KVLHNEGNFGDP-----LSLYLRALCREGRIIELLEALEAMAKDNQPV 396
Y + G KV + + G P ++ L LC G+I + L +E + K+ V
Sbjct: 905 YCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDV 963
>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Vitis vinifera]
Length = 590
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 17/206 (8%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A +L+ L + + KV+ + + G+ I++++I CK+GD A ++ E
Sbjct: 163 HACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNE 222
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
ME+ F +N L+S G+ A + ME G + PD TYN +I + R
Sbjct: 223 MESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGG--VSPDIVTYNSLIYGFCRE 280
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
R+++ L + PN TY L++ + + + EA+R R + EG
Sbjct: 281 ---GRMREALRLF----REINGATPNHVTYTTLIDGYCRVNDLEEALR-LREVMEVEG-- 330
Query: 354 KVLHNEGNFGDPLSLYLRALCREGRI 379
LH + + LR LC EG+I
Sbjct: 331 --LHPGVVTYNSI---LRKLCEEGKI 351
Score = 43.9 bits (102), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 101/255 (39%), Gaps = 12/255 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
A+ R V V M+ G+ P F+ L+ A +GD E A L S + P
Sbjct: 173 AKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDL 232
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFL 197
T L L+ KG+ + L I ME+ ++ DI + L+ R + +A ++F
Sbjct: 233 FTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDI-VTYNSLIYGFCREGRMREALRLFR 291
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
G Y +I C+ D AL + ME G +N +L + C
Sbjct: 292 E--INGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSIL--RKLCE 347
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
++ A E E ++PD T N +I AY + V + M+E L+
Sbjct: 348 EGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKK---KMLE--AGLK 402
Query: 318 PNVKTYALLVECFTK 332
P+ T+ L+ F K
Sbjct: 403 PDQFTFKALIHGFCK 417
>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 582
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 30/251 (11%)
Query: 111 VVAYTL-NGDHEGAMHSLKRELSAG-VRPLHETLIALARLFGSKGLATKGLEILAAMEKI 168
V+A+ + NG+HE A+ + L++ +P TL+++ G +GL A + +
Sbjct: 178 VIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCRK 237
Query: 169 NYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
++ + L+ + ++E A VF LR+ D ++ M+A +G A
Sbjct: 238 EIEVDEKLSSALINMYSKCGFIEGAVYVFENSC--ALRSVDT-WNAMLAGFTASGCSERA 294
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
LE+ ME++G + FN LL+ + G E FE M ++PD Y C++
Sbjct: 295 LELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMT-NSSSIEPDIAHYGCMV 353
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY-ALLVECFTKYCAVTEAIRHFRAL 346
+ RA +++ +++ +++ M +P+ + AL+ C R
Sbjct: 354 DLFCRAGLFEKAEEMIQMMPM--------EPDAAVWKALVGAC--------------RTY 391
Query: 347 QNYEGGTKVLH 357
N+E G K H
Sbjct: 392 SNFELGKKAGH 402
>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
Length = 784
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 13/233 (5%)
Query: 101 SPGPRS--FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
+PGP + + LV A++ G A+ +R + +GV+P T + ++ + K
Sbjct: 167 APGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKE 226
Query: 159 L-EILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
+ E++A+M++ + D R + L+ R ++A +VF G ++ ++
Sbjct: 227 VVELVASMKEHGVAPD-RYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLL 285
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
KA H A+E+ EME G + +N L+S G+ E A A + ME
Sbjct: 286 DVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKG-- 343
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+KPD TY +I RA D + E M+ K PN+ TY L++
Sbjct: 344 IKPDVVTYTTLISGLDRAGKIDAA--IVEYDEMVRNGCK---PNLCTYNALIK 391
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 9/236 (3%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M G+ P ++ L+ G + A+ + G +P T AL ++ G +G
Sbjct: 338 EMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRG 397
Query: 154 LATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
+ + + + + DI W L+ +N + + VF K G + Y
Sbjct: 398 KFPEMMAVFDELRSAGFVPDI-VTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTY 456
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+I+ + G A++I M AG +N +LS A G E A F ME
Sbjct: 457 VSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEME- 515
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVA-ELLGMMVEDHKRLQPNVKTYALL 326
E KPD +Y+ ++ AY A+ D+++ ++ ++ +E H L VKT L+
Sbjct: 516 -ERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWL---VKTLVLV 567
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 118/295 (40%), Gaps = 39/295 (13%)
Query: 54 LSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVA 113
+ST +V+SA +G R E+L RD P S+ L+ A
Sbjct: 488 VSTYNAVLSALARGGRWEQAEKLFAEMEERDC---------------KPDEYSYSSLLHA 532
Query: 114 YTLNGDHEGAMHSLKREL-SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI 172
Y N M +L ++ S + P H L+ L SK + LA EK ++
Sbjct: 533 YA-NAKRLDKMKALSDDIYSERIEP-HNWLVKTLVLVNSK------VNNLAEAEKAFLEL 584
Query: 173 RQAWLIL--------VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
RQ L V +N+ + K+ + + + Y+ ++ + GD
Sbjct: 585 RQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDC 644
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
I E++++G + +N ++ G + A F M+ +KPD TYN
Sbjct: 645 EKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG--LKPDVVTYN 702
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+++Y S ++ EL+ MV + +PN +TY +VE + + +T+A
Sbjct: 703 IFVKSYV---SNSMFEEAIELVRYMVT--QGCKPNERTYNSIVEGYCRNGKLTDA 752
>gi|225452948|ref|XP_002279015.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29290-like [Vitis vinifera]
Length = 546
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 112/270 (41%), Gaps = 30/270 (11%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D +MI GL PG + ++ A G + A+ + L+ G++P AL
Sbjct: 264 DAYSEMIQNGLKPGEDAMKAIIGACAKEGKWDLALSVFQSMLNVGLKPNLIACNALINSI 323
Query: 150 GSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G G + M+ + + D+ W L+ L R DA +F + +
Sbjct: 324 GKSGNVKLAFRVYDVMKSLGHTPDV-YTWNALLGALYRANQHADALHLFESIREQSSQVN 382
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
+Y+ + K G + AL++ ++MEA+G ++ +N ++ PE+A +E
Sbjct: 383 LHLYNTALMSCQKLGLWNRALQLLWQMEASGLSVSSASYNLVIGACEVARKPEIALQVYE 442
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV------------AELLGMM----VE 311
+M + PDT T+ +I++ + V+++ A + GM +E
Sbjct: 443 HMV--QQQCTPDTFTHLSLIRSCIWGSLWAEVKEILNRAGTDVSLYNAAIQGMCLRGKIE 500
Query: 312 DHKR---------LQPNVKTYALLVECFTK 332
K+ L+P+ KT AL+++ K
Sbjct: 501 SAKKLYMRMRKSGLKPDGKTRALMLQNLQK 530
>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Brachypodium distachyon]
Length = 606
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 14/247 (5%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
F LV AY GD A LK G RP + AL +G K + M+
Sbjct: 144 FLMLVTAYGKLGDFSRAERVLKYMNKKGYRPTVISQTALMEAYGRAKQYRKAEAVFHRMQ 203
Query: 167 KINYDIRQ-AWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAEDCKAG 222
+ + I+++ LV ++A +F L + + +++ +MI K+G
Sbjct: 204 TSGPEPSPITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSG 263
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
D++ A ++ +M G +T FN L+S + EV+ + ++ M+ +KPD +
Sbjct: 264 DYAQARKLFAQMSERGIPQSTVTFNSLMSFEGD--YKEVS-SIYDQMQRAG--LKPDVVS 318
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRH 342
Y+ +I+AY +A R ++ + + M++ ++P K+Y +L++ F V EA
Sbjct: 319 YSLLIKAYGKAR---REEEASAVFEEMLDAG--IRPTRKSYNILLDAFAISGLVEEAQTV 373
Query: 343 FRALQNY 349
F+ ++ +
Sbjct: 374 FKTMRRH 380
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 111/273 (40%), Gaps = 14/273 (5%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDH----EGAMHSLKRELSAG 134
+ R + + V + M +G P P ++ +++ + GD E L E
Sbjct: 186 YGRAKQYRKAEAVFHRMQTSGPEPSPITYQ-IILKSLVEGDKYKEAEAIFEDLLSEKRTF 244
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANK 194
+P + + ++ G + ++ A M + I Q+ + + ++ +
Sbjct: 245 FKPDQKMFHMMIYMYKKSGDYAQARKLFAQMSERG--IPQSTVTFNSLMSFEGDYKEVSS 302
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
++ + + GL+ Y L+I KA A + EM AG T +N LL A
Sbjct: 303 IYDQMQRAGLKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFA 362
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G+ E A F+ M ++PD +Y ++ AY A D + + + ED
Sbjct: 363 ISGLVEEAQTVFKTMR--RHRVEPDLCSYTTMLLAYVNASDMDGAE---KFFRRIKEDG- 416
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
L+PNV Y L++ ++K V + +R + ++
Sbjct: 417 -LRPNVVVYGTLMKGYSKLDNVEKVMRVYERMR 448
>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
Length = 621
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 146/366 (39%), Gaps = 34/366 (9%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
LM AR+R P + + M A L R++ L+ AY L GD A L L AG+
Sbjct: 48 LMALARHRMFPDMESLASRMPARNL----RTYTTLINAYCLAGDIPAAKQHLTSLLHAGL 103
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA--WLILVEELVRNKYLEDAN 193
P + + G+ T + M + +R A + L+ L+ + +A
Sbjct: 104 APDSYAYTSFVLGYCRAGMLTHACRVFVLM-PLRGCLRTAFTYTALLHGLLGAGMVREAM 162
Query: 194 KVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
VF+ G + A D +Y M+ C+AG A + E + G +N L+
Sbjct: 163 AVFV-GMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDG 221
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G E A FE M+ + P+ TY +I ++ +V+ L MVE
Sbjct: 222 YCNAGEMEHALKVFEGMD--GNRCSPNVRTYTELIHGLCKS---GKVERAMVLFSRMVE- 275
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 372
L+PNV TY L++ C FR L E ++ N+ F S+ + A
Sbjct: 276 -AGLEPNVVTYTALIQ---GQCNEGHLQCAFRLLHLME-TNGLVPNDWTF----SVLIDA 326
Query: 373 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIA 432
LC+ ++ E L ++ K V + +S I+ L + ++ + +
Sbjct: 327 LCKREKVEEAQLFLGSLVKKGVKVN----------EVVYTSLIDGLCKTGKIDAADELMQ 376
Query: 433 RYISEG 438
+ ISEG
Sbjct: 377 KMISEG 382
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 22/232 (9%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-LHETLIAL 145
+VN+V+Y + GL G + A +++ +S G P H +
Sbjct: 349 KVNEVVYTSLIDGLCK--------------TGKIDAADELMQKMISEGFVPDAHSYSSLI 394
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
L K L+ L + MEK + I+++ELVR E K+F + G+
Sbjct: 395 DGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGIN 454
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y + + C+ G +A + +M G +N L+ A G+ AF+T
Sbjct: 455 PDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFST 514
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
FE M G+ + KP+ ++Y +++ + S D D+ + + D K LQ
Sbjct: 515 FEVM-VGKGW-KPNEDSYTVLLRLVVKKSSSDNSVDIWK-----IADMKDLQ 559
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 111/283 (39%), Gaps = 45/283 (15%)
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE 160
SP R++ L+ +G E AM R + AG+ P T AL + ++G
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFR 303
Query: 161 ILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L ME N + W +L++ L + + +E+A K G++ + +Y +I
Sbjct: 304 LLHLMET-NGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGL 362
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF---ENMEYG--- 272
CK G A E+ +M + G + ++ L+ C +++ AT + ME G
Sbjct: 363 CKTGKIDAADELMQKMISEGFVPDAHSYSSLI--DGLCRQKKLSQATLMLEDMMEKGIQA 420
Query: 273 -----------------------------EDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303
+ PD TY +++Y R++D
Sbjct: 421 SPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEE---GRMEDAE 477
Query: 304 ELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
++ MV+ + + PN+ TY L+ + V++A F +
Sbjct: 478 SMIVQMVD--RGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVM 518
>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
Length = 496
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 1/145 (0%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M AAG P +++ L+ + D A +L G+ P T L F +
Sbjct: 204 MKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENH 263
Query: 155 ATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
K EILA MEK ++ + +LV L ++DA K+F + G+ ++ IYD+
Sbjct: 264 MGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDM 323
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAG 238
MI + G AL++ EM G
Sbjct: 324 MIYGYGREGSSYKALKLIMEMRQKG 348
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 37/201 (18%)
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
V L + A + RG K G A D ++ CK GD + A + EM G
Sbjct: 9 VRRLCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLG 68
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ L+ T G E FA FE M G ++P+ TYNC+I + R ++R
Sbjct: 69 LAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGG--VEPNLYTYNCLIGEWCRTGEFER 126
Query: 299 VQ--------------------------------DVAELLGMMVEDHKRLQPNVKTYALL 326
+ D A+LL MM + R P++ T+ LL
Sbjct: 127 ARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTR--PSIITFNLL 184
Query: 327 VECFTKYCAVTEAIRHFRALQ 347
V+ + K ++ A+ F ++
Sbjct: 185 VDGYGKAGKMSNALPFFNQMK 205
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 10/269 (3%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ D V +M GL+P ++ L+ Y +G E + GV P
Sbjct: 49 CKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNL 108
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFL 197
T L + G + + M + +R ++ L+ L R+ L DA K+
Sbjct: 109 YTYNCLIGEWCRTGEFERARSLFDEM-PVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLD 167
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
G R + ++L++ KAG SNAL +M+AAG + +N L++ C
Sbjct: 168 MMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIA--GFCR 225
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
++ A + E ++P TY +I ++ R + ++ L GM + L+
Sbjct: 226 ARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEI--LAGM---EKAGLE 280
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ TY +LV + +A + F+++
Sbjct: 281 VDAHTYGVLVRALCMEGNMKDARKLFQSM 309
>gi|449437886|ref|XP_004136721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Cucumis sativus]
gi|449501176|ref|XP_004161299.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Cucumis sativus]
Length = 1037
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 99/232 (42%), Gaps = 29/232 (12%)
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G + G T E Y++ I D + + YEM G T + + ++ A G+
Sbjct: 674 GKQPGYNHTTETYNMAIKIAGLGKDFKHMRSLFYEMRRRGCSITPYTWTIMIMQYARAGL 733
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E+A ++E M+ E +KP+ TY +I + ++ +V + L M+ H + P
Sbjct: 734 TEIALKSYEEMK--EINIKPNANTYKYLIMSLCESKR-RKVDEAITLFQEMI--HSKYIP 788
Query: 319 NVKTYALLVECFTKYCAVTEA---IRHFRALQNYEGGTKVLHNEGNFGDPL--SLYLRAL 373
+ + + C K +++A I H R + F PL SLY+RAL
Sbjct: 789 DKELLETYLGCLCKLSRLSDAKKCIDHLRKV--------------GFSIPLTYSLYIRAL 834
Query: 374 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELG 425
CR ++ E L LE + D R+ + S Y +LV ++ + E L
Sbjct: 835 CRARKLDEALTLLEEVVGDE-----RSKLDSYIYGSLVYGLLQTGRTEEALA 881
Score = 40.4 bits (93), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 72/349 (20%), Positives = 131/349 (37%), Gaps = 58/349 (16%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
+D + + Y+M G S P ++ +++ Y G E A+ S + ++P T
Sbjct: 697 KDFKHMRSLFYEMRRRGCSITPYTWTIMIMQYARAGLTEIALKSYEEMKEINIKPNANTY 756
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY-------------- 188
L I++ E + +A + L +E++ +KY
Sbjct: 757 KYL---------------IMSLCESKRRKVDEA-ITLFQEMIHSKYIPDKELLETYLGCL 800
Query: 189 -----LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT- 242
L DA K K G + Y L I C+A AL + E+ R
Sbjct: 801 CKLSRLSDAKKCIDHLRKVGF-SIPLTYSLYIRALCRARKLDEALTLLEEVVGDERSKLD 859
Query: 243 TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
++ + L+ G E A A +M+ + + P Y I Y+ E R
Sbjct: 860 SYIYGSLVYGLLQTGRTEEALAKMNSMK--QVGINPTVHVYTSFI-VYSFKEKQTR--RA 914
Query: 303 AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF 362
E+L M+++ +P++ TY+ +V + V EA + F ++ Y
Sbjct: 915 LEILAKMLQEG--CEPSIATYSAIVHGYMNMGKVCEAWKVFNYMKKYGPSPDF------- 965
Query: 363 GDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV 411
++ + LC+ GR E LE + M N + P ++ +RT++
Sbjct: 966 -KAYTMLISCLCKAGRSEEALEIISDML--NNGIAPSSI----NFRTVI 1007
>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
Length = 590
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 17/206 (8%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A +L+ L + + KV+ + + G+ I++++I CK+GD A ++ E
Sbjct: 163 HACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNE 222
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
ME+ F +N L+S G+ A + ME G + PD TYN +I + R
Sbjct: 223 MESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGG--VSPDIVTYNSLIYGFCRE 280
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
R+++ L + PN TY L++ + + + EA+R R + EG
Sbjct: 281 ---GRMREALRLF----REINGATPNHVTYTTLIDGYCRVNDLEEALR-LREVMEVEG-- 330
Query: 354 KVLHNEGNFGDPLSLYLRALCREGRI 379
LH + + LR LC EG+I
Sbjct: 331 --LHPGVVTYNSI---LRKLCEEGKI 351
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 101/255 (39%), Gaps = 12/255 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
A+ R V V M+ G+ P F+ L+ A +GD E A L S + P
Sbjct: 173 AKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDL 232
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFL 197
T L L+ KG+ + L I ME+ ++ DI + L+ R + +A ++F
Sbjct: 233 FTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDI-VTYNSLIYGFCREGRMREALRLFR 291
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
G Y +I C+ D AL + ME G +N +L + C
Sbjct: 292 E--INGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSIL--RKLCE 347
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
++ A E E ++PD T N +I AY + V + M+E L+
Sbjct: 348 EGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKK---KMLE--AGLK 402
Query: 318 PNVKTYALLVECFTK 332
P+ T+ L+ F K
Sbjct: 403 PDQFTFKALIHGFCK 417
>gi|357110688|ref|XP_003557148.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27270-like [Brachypodium distachyon]
Length = 1038
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
Q + I++ + L+ A ++F + GLR ++ Y M++ KAG H +A +
Sbjct: 783 QTFNIMISVYGQGGKLDKATEMFTAAQELGLRIDEKTYTNMLSFYGKAGRHQDASVLFTR 842
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+ G M FN +++ AT G+ + A FE M+ P++ TY +I+AYT
Sbjct: 843 MKEEGIMPGKISFNSMVNVYATSGLHDKAKFIFEEMQSSGQI--PESLTYLALIKAYTEG 900
Query: 294 ESYDRVQDVAELL 306
SY + ++ +++
Sbjct: 901 RSYSKAEEAIQMM 913
>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
Length = 773
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 109/267 (40%), Gaps = 23/267 (8%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ +++ DM + +F L+ AY NG +E ++H L R V P T +
Sbjct: 100 KCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVL 159
Query: 147 RLFGSKGLATKG-LEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
GL +G L + A M E I D+ + L+ +E A VF + G
Sbjct: 160 NACSKGGLDWEGLLNLFAQMRHEGIQPDLI-TYNTLLSACSSRGLVEQAAMVFKTMNESG 218
Query: 204 LRATDEIYDLMIAEDCKAGDHSNAL----EIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
+ A Y ++ D AG SN L E+ EME G +N L+ A G
Sbjct: 219 VVADAVTYKSLV--DTFAG--SNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNV 274
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ-- 317
A F+ M+ G PD ETY+ +++ Y +++V+ + D K L
Sbjct: 275 HGAAGVFKQMQRGG--CAPDVETYSTLLRIYGNQGCFEQVRS-------LFSDMKELSTP 325
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFR 344
P V TY L++ F + E+I F
Sbjct: 326 PTVATYNSLIQVFGEGGYFQESINLFH 352
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 111/266 (41%), Gaps = 8/266 (3%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
RV +++ +M G SP ++ L+ AY G+ GA K+ G P ET L
Sbjct: 241 RVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLL 300
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
R++G++G + + + M++++ A + L++ Y +++ +F G++
Sbjct: 301 RIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVK 360
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
D Y +++ + G A +I M + L+S + + A +
Sbjct: 361 PDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVS 420
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+ + E + P Y+ +IQ Y + Y V+ + L M + Q V +
Sbjct: 421 YYRIR--EAGLDPQVSAYDALIQGYAKGGLY--VEAGSTLYAM---NKAGFQAPVSSVNS 473
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEG 351
++E ++K EA+ F LQ EG
Sbjct: 474 VMEAYSKVGLHDEALEFFSELQQKEG 499
>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
Length = 880
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 115/284 (40%), Gaps = 42/284 (14%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
+D V DM+ G+ P ++ ++ A+ G+ + A+ ++K RP T
Sbjct: 533 KDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 592
Query: 143 IALARLFGSKGLATKGLEILAAMEK-------------IN--YDIRQAWLILVE------ 181
+ + + G + LE+ M + IN + RQA IL E
Sbjct: 593 MPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEILDEMTLAGV 652
Query: 182 ---ELVRNKYLE---------DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229
E K ++ A + F R GL Y+ ++ CK+G +AL
Sbjct: 653 SANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALA 712
Query: 230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
+ EM A +F +N L+ A G A + M+ ++ +KPD TY I A
Sbjct: 713 VTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK--KEGVKPDIHTYTSFISA 770
Query: 290 YTRAESYDR-VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
++A +R Q + E+ + V +PN+KTY L++ + +
Sbjct: 771 CSKAGDMNRATQTIEEMEALGV------KPNIKTYTTLIKGWAR 808
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/371 (19%), Positives = 131/371 (35%), Gaps = 77/371 (20%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I+ + + H + + R ++ +M G+ +H ++ YT+ D + + KR
Sbjct: 416 IYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRL 475
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE 190
G P T L L+ G +K LE+ M++
Sbjct: 476 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKE----------------------- 512
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
G K L+ Y +MI K D +NA + +M G +N+++
Sbjct: 513 -------EGVKHNLKT----YSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNII 561
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA-------ESYD------ 297
S A CG+ + A E + +P T T+ +I Y ++ E +D
Sbjct: 562 S--AFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCG 619
Query: 298 ---RVQDVAELLGMMVEDHKRLQ-----------PNVKTYALLVECFTKYCAVTEAIRHF 343
V L+ +VE + ++ N TY +++ + +A +F
Sbjct: 620 CVPTVHTFNGLINGLVEKRQAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYF 679
Query: 344 RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMIL 403
LQN + E L+A C+ GR+ L + M+ N +P + +
Sbjct: 680 TRLQNEGLDVDIFTYEA--------LLKACCKSGRMQSALAVTKEMSARN--IPRNSFV- 728
Query: 404 SRKYRTLVSSW 414
Y L+ W
Sbjct: 729 ---YNILIDGW 736
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 5/202 (2%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+++ +M AG+S ++ ++ Y GD A R + G+ T AL +
Sbjct: 642 EILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKAC 701
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G L + M N R +++ IL++ R + +A + + K G++
Sbjct: 702 CKSGRMQSALAVTKEMSARNIP-RNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 760
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y I+ KAGD + A + EMEA G + L+ A +PE A + +E
Sbjct: 761 IHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYE 820
Query: 268 NMEYGEDYMKPDTETYNCVIQA 289
M+ +KPD Y+C++ +
Sbjct: 821 EMKAMG--IKPDKAVYHCLLTS 840
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 63/312 (20%), Positives = 119/312 (38%), Gaps = 68/312 (21%)
Query: 34 EKKTRRKKQQRRQQKHGDSLLSTNG----SVVSAAEQ---------GLRLIFMEELMQHA 80
E++ RK QR +L TNG +V+SA E+ GL + F +
Sbjct: 275 EREGSRKSLQR--------ILDTNGDNWQAVISAFEKISKPSRTEFGLMVKF------YG 320
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R D R + M A G++P R + L+ AY + D + A+ +++
Sbjct: 321 RRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRK----------- 369
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
+ +G+E M + Y + +V + + E A+ F
Sbjct: 370 -------------MKEEGIE----MSLVTYSV------IVGGFSKAGHAEAADYWFDEAK 406
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ IY +I C+ + A + EME G A ++ ++ +
Sbjct: 407 RIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEK 466
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
F+ ++ E P TY C+I YT+ + +V+ ++ + ++ N+
Sbjct: 467 KGLVVFKRLK--ECGFTPTVVTYGCLINLYTKVGKISKALEVSRVM-----KEEGVKHNL 519
Query: 321 KTYALLVECFTK 332
KTY++++ F K
Sbjct: 520 KTYSMMINGFVK 531
>gi|413916330|gb|AFW56262.1| hypothetical protein ZEAMMB73_879964 [Zea mays]
Length = 428
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 20/222 (9%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+ GL P ++ + T G E AM + R + AG ++ LI + S G
Sbjct: 188 EMLQKGLDPSEDIMKAIIASCTKEGKWEFAMSTFSRMMRAG---MNLGLILFNSIINSLG 244
Query: 154 ------LATKGLEIL--AAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG-- 203
LA + +L + ++ Y W+ L+ L R+ D K+F G KG
Sbjct: 245 KDGQDELAFRMYHLLKQSGLKPDQY----TWITLLLALYRSGRCWDCLKLF-HGIKGKHP 299
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
D +Y+ + K G + L++ + ME G + +NH++ P+VA
Sbjct: 300 TLLNDHLYNTALISCEKLGQWEHGLQLLWLMEKRGLKLSVVSYNHVIGACEVASKPKVAL 359
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
++ M PDT T+ +I+A + V+D+ E+
Sbjct: 360 KVYQRMI--NQRCSPDTFTHLSIIRACIWGSLWTEVEDILEI 399
>gi|297733647|emb|CBI14894.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 80/211 (37%), Gaps = 40/211 (18%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D M G+ P S+ L+ AY++ G HE A + + G++P ET AL F
Sbjct: 440 DAFLRMKKVGIKPTSHSYTALIHAYSVGGWHEKAYTAFENMKREGIKPSIETYTALLDAF 499
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G ++I M +KI R + IL++ + + +A V K G + T
Sbjct: 500 RRAGDTQTLMKIWKLMLSDKIE-GTRVTFNILLDGFAKQGHYMEARDVIFEFGKIGFQPT 558
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y++++ + G HS ++ EM +
Sbjct: 559 VMTYNMLMNAYARGGQHSRLPQLLKEMTSLN----------------------------- 589
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+KPD+ TY+ +I AY R + R
Sbjct: 590 --------LKPDSITYSTMIYAYVRVRDFKR 612
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+DA + F R + G++ + E+ +I C G + AL I EME G + +N L
Sbjct: 295 KDAWEFFQRMNRKGVKWSLEVLGALIKSFCDEGLKNEALIIQSEMEKKGISSNAIVYNTL 354
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ-DVAELLGM 308
+ + E A F M+ + P + TYN ++ AY+R R+Q ++ E L +
Sbjct: 355 MDAYSKSNRVEEAEGLFGEMK--AKGVMPTSATYNILMDAYSR-----RMQPEIIENLLL 407
Query: 309 MVEDHKRLQPNVKTYALLVECFTK 332
++D L+PNVK+Y L+ + +
Sbjct: 408 EMQDMG-LEPNVKSYTCLISAYGR 430
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY-EMEA 236
IL++ R E + L GL + Y +I+ + S+ A+ M+
Sbjct: 388 ILMDAYSRRMQPEIIENLLLEMQDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKK 447
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
G T+ + L+ + G E A+ FENM+ + +KP ETY ++ A+ RA
Sbjct: 448 VGIKPTSHSYTALIHAYSVGGWHEKAYTAFENMK--REGIKPSIETYTALLDAFRRAGD- 504
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
Q + ++ +M+ D +++ T+ +L++ F K EA
Sbjct: 505 --TQTLMKIWKLMLSD--KIEGTRVTFNILLDGFAKQGHYMEA 543
>gi|384492050|gb|EIE83246.1| hypothetical protein RO3G_07951 [Rhizopus delemar RA 99-880]
Length = 731
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 82/168 (48%), Gaps = 5/168 (2%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
+V LV NK L+ ANK++ + + + ++ M+ GD +ALE+ +M
Sbjct: 260 MVNGLVINKELKVANKIYQQMIQTKFKPDIVTFNTMLKGYADVGDLGSALEVIKDMFRLN 319
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ F ++ P+ A N+ Y E +KP+ T+N +I + R ++
Sbjct: 320 QEPDIVTFTTFINSIFDTKTPKSA-EDMMNLLY-EMGVKPNIYTFNSMINGWIRV---NK 374
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ + + L MM+ D+K L+P V T+ L++ + + + +A++ F+ L
Sbjct: 375 MSEAEKTLNMMMTDYKELKPTVHTFTNLIQGYIEQMNLNKAMKTFQTL 422
>gi|357444885|ref|XP_003592720.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481768|gb|AES62971.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 553
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 18/279 (6%)
Query: 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEIL 162
G F L+ AY GD GA L G P + AL +G G I
Sbjct: 139 GKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIF 198
Query: 163 AAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAED 218
M+ + + I+++ V+ ++A +VF L K LR +++++MI
Sbjct: 199 RRMQTFGPEPSAFTYQIILKTFVQGNKFKEAEEVFDKLLNDEKSPLRPDQKMFNMMIYMY 258
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
K+G H A + M G T +N L+S + EV+ ++ M+ + ++P
Sbjct: 259 KKSGSHEKARQTFALMAERGIKKATVTYNSLMSFETN--YKEVS-NIYDQMQRAD--LRP 313
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
D +Y +I AY +A R ++ + M++ R P K Y +L++ F+ V +
Sbjct: 314 DVVSYALLINAYGKAR---REEEALAVFEEMLDAGVR--PTRKAYNILLDAFSISGMVEQ 368
Query: 339 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
A F++++ K + + ++ LS Y+ A EG
Sbjct: 369 ARIVFKSMRR----DKYMPDLCSYTTMLSAYVNAPDMEG 403
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 102/262 (38%), Gaps = 44/262 (16%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I ++ +Q + ++A V D + + + L P + F+ ++ Y +G HE A +
Sbjct: 215 IILKTFVQGNKFKEAEEVFDKLLNDEKSPLRPDQKMFNMMIYMYKKSGSHEKARQTFALM 274
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE 190
G++ AT L + E NY +
Sbjct: 275 AERGIKK-----------------ATVTYNSLMSFE-TNY-------------------K 297
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+ + ++ + + LR Y L+I KA AL + EM AG T +N LL
Sbjct: 298 EVSNIYDQMQRADLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTRKAYNILL 357
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
+ G+ E A F++M D PD +Y ++ AY A ++ + ++
Sbjct: 358 DAFSISGMVEQARIVFKSMR--RDKYMPDLCSYTTMLSAYVNAPD---MEGAEKFFKRLI 412
Query: 311 EDHKRLQPNVKTYALLVECFTK 332
+D +PNV TY L++ + K
Sbjct: 413 QDG--FEPNVVTYGTLIKGYAK 432
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 9/218 (4%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
IYD M A L P S+ L+ AY E A+ + L AGVRP + L F
Sbjct: 302 IYDQMQRADLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFS 361
Query: 151 SKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G+ + + +M + Y D+ ++ ++ V +E A K F R + G
Sbjct: 362 ISGMVEQARIVFKSMRRDKYMPDL-CSYTTMLSAYVNAPDMEGAEKFFKRLIQDGFEPNV 420
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y +I KA D +E EM G A ++ G + A F+
Sbjct: 421 VTYGTLIKGYAKANDIEKVMEKYEEMLGRGIKANQTILTTIMDAHGKNGDFDSAVNWFKE 480
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
M + + PD + N ++ + A++ + +++ EL+
Sbjct: 481 MAL--NGLLPDQKAKNILL---SLAKTEEDIKEANELV 513
>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
Length = 949
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 115/284 (40%), Gaps = 42/284 (14%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
+D V DM+ G+ P ++ ++ A+ G+ + A+ ++K RP T
Sbjct: 533 KDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 592
Query: 143 IALARLFGSKGLATKGLEILAAMEK-------------IN--YDIRQAWLILVE------ 181
+ + + G + LE+ M + IN + RQA IL E
Sbjct: 593 MPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEILDEMTLAGV 652
Query: 182 ---ELVRNKYLE---------DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229
E K ++ A + F R GL Y+ ++ CK+G +AL
Sbjct: 653 SANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALA 712
Query: 230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
+ EM A +F +N L+ A G A + M+ ++ +KPD TY I A
Sbjct: 713 VTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK--KEGVKPDIHTYTSFISA 770
Query: 290 YTRAESYDR-VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
++A +R Q + E+ + V +PN+KTY L++ + +
Sbjct: 771 CSKAGDMNRATQTIEEMEALGV------KPNIKTYTTLIKGWAR 808
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/371 (19%), Positives = 131/371 (35%), Gaps = 77/371 (20%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I+ + + H + + R ++ +M G+ +H ++ YT+ D + + KR
Sbjct: 416 IYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRL 475
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE 190
G P T L L+ G +K LE+ M++
Sbjct: 476 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKE----------------------- 512
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
G K L+ Y +MI K D +NA + +M G +N+++
Sbjct: 513 -------EGVKHNLKT----YSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNII 561
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA-------ESYD------ 297
S A CG+ + A E + +P T T+ +I Y ++ E +D
Sbjct: 562 S--AFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCG 619
Query: 298 ---RVQDVAELLGMMVEDHKRLQ-----------PNVKTYALLVECFTKYCAVTEAIRHF 343
V L+ +VE + ++ N TY +++ + +A +F
Sbjct: 620 CVPTVHTFNGLINGLVEKRQAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYF 679
Query: 344 RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMIL 403
LQN + E L+A C+ GR+ L + M+ N +P + +
Sbjct: 680 TRLQNEGLDVDIFTYEA--------LLKACCKSGRMQSALAVTKEMSARN--IPRNSFV- 728
Query: 404 SRKYRTLVSSW 414
Y L+ W
Sbjct: 729 ---YNILIDGW 736
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 5/202 (2%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+++ +M AG+S ++ ++ Y GD A R + G+ T AL +
Sbjct: 642 EILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKAC 701
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G L + M N R +++ IL++ R + +A + + K G++
Sbjct: 702 CKSGRMQSALAVTKEMSARNIP-RNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 760
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y I+ KAGD + A + EMEA G + L+ A +PE A + +E
Sbjct: 761 IHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYE 820
Query: 268 NMEYGEDYMKPDTETYNCVIQA 289
M+ +KPD Y+C++ +
Sbjct: 821 EMKAMG--IKPDKAVYHCLLTS 840
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 63/312 (20%), Positives = 119/312 (38%), Gaps = 68/312 (21%)
Query: 34 EKKTRRKKQQRRQQKHGDSLLSTNG----SVVSAAEQ---------GLRLIFMEELMQHA 80
E++ RK QR +L TNG +V+SA E+ GL + F +
Sbjct: 275 EREGSRKSLQR--------ILDTNGDNWQAVISAFEKISKPSRTEFGLMVKF------YG 320
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R D R + M A G++P R + L+ AY + D + A+ +++
Sbjct: 321 RRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRK----------- 369
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
+ +G+E M + Y + +V + + E A+ F
Sbjct: 370 -------------MKEEGIE----MSLVTYSV------IVGGFSKAGHAEAADYWFDEAK 406
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ IY +I C+ + A + EME G A ++ ++ +
Sbjct: 407 RIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEK 466
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
F+ ++ E P TY C+I YT+ + +V+ ++ + ++ N+
Sbjct: 467 KGLVVFKRLK--ECGFTPTVVTYGCLINLYTKVGKISKALEVSRVM-----KEEGVKHNL 519
Query: 321 KTYALLVECFTK 332
KTY++++ F K
Sbjct: 520 KTYSMMINGFVK 531
>gi|357142282|ref|XP_003572519.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 706
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 12/267 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
++I +M+ SP +F+ ++ G + A+ + + G +P + T AL F
Sbjct: 313 ELITEMVRKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSALINAF 372
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+G LE+L +M + + +++ L R+ ED ++ + +
Sbjct: 373 SEQGCVEDALELLRSMPCSPNTV--CYKSVLKGLCRDGQWEDVGQLIGEMVRNDCAPDEM 430
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ L+I C+ G LE+ E+ G + LL+ A G + + F++M
Sbjct: 431 VFGLIIDCLCQRGLVDCGLEVLQEVPNYGCSPDVVMYTSLLNGFAEYGRVDDSLKLFKSM 490
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
KP+T TYN V+ + E + +D +L+ MV + PN T+++L+
Sbjct: 491 T-----CKPNTVTYNYVLMGLCKVELW---EDAGKLIDEMV--GQECPPNEMTFSILISS 540
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVL 356
+ V AI F +Q Y V+
Sbjct: 541 LCQKGLVECAIDVFEKMQMYGCTPNVI 567
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 106/284 (37%), Gaps = 61/284 (21%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LVEE+ RN D D + ++I C++G A+ I M G
Sbjct: 212 LVEEMTRNDSPPD----------------DLTFGMLIHSFCQSGLVDRAMGILDRMSKCG 255
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+N ++SC A G + A F M KPD +YN V++ RAE R
Sbjct: 256 CTPGAIVYNEIISCFAELGRVKEALHLFSCMP-----CKPDIFSYNAVLKGLCRAE---R 307
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYAL---------LVECFTKYCAVTEAIRHFRALQN- 348
+D EL+ MV K P+ T+ LV+C + V + ++ R N
Sbjct: 308 WEDAGELITEMV--RKDCSPDEVTFNTVISFLCHKGLVDCALE--VVDQMPKYGRKPDNF 363
Query: 349 -YEGGTKVLHNEGNFGDPLSLY---------------LRALCREGRIIELLEALEAMAKD 392
Y +G D L L L+ LCR+G+ ++ + + M ++
Sbjct: 364 TYSALINAFSEQGCVEDALELLRSMPCSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRN 423
Query: 393 NQPVPPRAMIL-----SRKYRTLVSSWIEPLQEEAELGYEIDYI 431
+ P M+ R LV +E LQE G D +
Sbjct: 424 D--CAPDEMVFGLIIDCLCQRGLVDCGLEVLQEVPNYGCSPDVV 465
>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 107/255 (41%), Gaps = 14/255 (5%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M +G+ P ++ L+ + + AM + R LS G+ P T L
Sbjct: 433 VLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHC 492
Query: 151 SKGLATKGLEILA-AMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G + E+ MEK + I++ + +D + GL
Sbjct: 493 KAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAV 552
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y +I K+G +A+E +M+AAG ++ +N LL+ A G+ + A + F M
Sbjct: 553 TYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAM 612
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA----- 324
+D +KP N +I A+ + DR +DV + + L+P+V TY
Sbjct: 613 R--DDGLKPSLLALNSLINAFGK----DR-RDVEAFVVLQYMKENDLKPDVVTYTTLMKA 665
Query: 325 -LLVECFTKYCAVTE 338
+LVE F K +V E
Sbjct: 666 LILVEKFDKVPSVYE 680
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 10/260 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M +G+ P +++ L+ AY E A LK ++ V+P + +
Sbjct: 363 VVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYR 422
Query: 151 SKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
KG K ++L ME + D R + +L++ + L+ A F R G+
Sbjct: 423 DKGEWQKTFQVLREMEDSGVRPD-RIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDT 481
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
++ ++ CKAG H A E+ EM G + FN +++ + N
Sbjct: 482 ITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTN 541
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
M + P+ TY +I Y ++ +D D E L M L+P+ Y L+
Sbjct: 542 MR--SQGLLPNAVTYTTLIDIYGKSGRFD---DAIECLDDM--KAAGLKPSSTMYNALLN 594
Query: 329 CFTKYCAVTEAIRHFRALQN 348
+ + +A+ F A+++
Sbjct: 595 AYAQRGLSDQAVSAFWAMRD 614
Score = 47.0 bits (110), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 14/245 (5%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
++ ++V + GD + A+ L +G+ TL+ + G+ G + I M
Sbjct: 274 WNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMR 333
Query: 167 KINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
R +A+ L+ V+ L DA V + G+ ++ Y L+I A
Sbjct: 334 DNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWE 393
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
+A + EMEA+ + F+ +L+ G + F ME + ++PD YN
Sbjct: 394 SARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREME--DSGVRPDRIFYNV 451
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA 345
+I + + D +A M+ E ++P+ T+ LV+C K A +H RA
Sbjct: 452 LIDTFGKFNCLDHA--MATFDRMLSEG---IEPDTITWNTLVDCHCK------AGKHDRA 500
Query: 346 LQNYE 350
+ +E
Sbjct: 501 EELFE 505
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 97/246 (39%), Gaps = 14/246 (5%)
Query: 99 GLSPGPRSFHGLVVAYTLNG---DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
GL P R+++ L+ Y G D E + ++R +GV P +T L +G+
Sbjct: 336 GLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMER---SGVLPNEQTYSLLIDAYGNAERW 392
Query: 156 TKGLEILAAMEKINYDIRQAWLILVEELVRNK-YLEDANKVFLRGAKGGLRATDEIYDLM 214
+L ME N + R+K + +V G+R Y+++
Sbjct: 393 ESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVL 452
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I K +A+ M + G T +N L+ C G + A FE M E
Sbjct: 453 IDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMM--EK 510
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
P T+N +I ++ E +D DV LL M + L PN TY L++ + K
Sbjct: 511 GYLPCNTTFNIMINSFGDQERWD---DVKNLLTNM--RSQGLLPNAVTYTTLIDIYGKSG 565
Query: 335 AVTEAI 340
+AI
Sbjct: 566 RFDDAI 571
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 12/178 (6%)
Query: 157 KGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDA--NKVFLRGAKGGLRATDEIYD 212
K L ++ M + Y D+ LI + L++N + K++ + L ++++
Sbjct: 217 KALNLICRMREDGYPSDLVNYSLI-IRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWN 275
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I KAGD ALE ++ +G T ++ CG E A A FE M
Sbjct: 276 DIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMR-- 333
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
++ ++P T YN +++ Y +A ++D ++ M + + PN +TY+LL++ +
Sbjct: 334 DNGLQPRTRAYNALLRGYVKA---GLLRDAEFVVSEM--ERSGVLPNEQTYSLLIDAY 386
>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Glycine max]
Length = 562
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 14/249 (5%)
Query: 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEIL 162
G F L+ AY GD GA L G P + AL +G G I
Sbjct: 135 GKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIF 194
Query: 163 AAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAED 218
M+K + + I+++ V+ +A ++F L L+ +++++MI
Sbjct: 195 RRMQKWGPEPSAFTYQIILKTFVQGNKFREAEELFDNLLNDENSPLKPDQKMFNMMIYMH 254
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
KAG + A + +M G TT +N L+S + EV+ ++ M+ + ++P
Sbjct: 255 KKAGSYEKARKTFAQMAELGIQQTTVTYNSLMSFETN--YKEVS-NIYDQMQRAD--LRP 309
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
D +Y ++ AY +A R ++ + M++ R P K Y +L++ F+ V +
Sbjct: 310 DVVSYALLVSAYGKAR---REEEALAVFEEMLDAGIR--PTRKAYNILLDAFSISGMVEQ 364
Query: 339 AIRHFRALQ 347
A F++++
Sbjct: 365 AQTVFKSMR 373
Score = 46.2 bits (108), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y L+++ KA AL + EM AG T +N LL + G+ E A F++M
Sbjct: 314 YALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFSISGMVEQAQTVFKSMR 373
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
D PD +Y ++ AY A D ++ + +++D +PNV TY L++ +
Sbjct: 374 --RDRYFPDLCSYTTMLSAYINA---DDMEGAEKFFKRLIQDG--FEPNVVTYGTLIKGY 426
Query: 331 TK 332
K
Sbjct: 427 AK 428
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 6/199 (3%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
IYD M A L P S+ LV AY E A+ + L AG+RP + L F
Sbjct: 298 IYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFS 357
Query: 151 SKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G+ + + +M + Y D+ ++ ++ + +E A K F R + G
Sbjct: 358 ISGMVEQAQTVFKSMRRDRYFPDL-CSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNV 416
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y +I K D ++ EM G A ++ G + A F+
Sbjct: 417 VTYGTLIKGYAKINDLEMVMKKYEEMLMRGIKANQTILTTIMDAYGKSGDFDSAVHWFKE 476
Query: 269 MEYGEDYMKPDTETYNCVI 287
ME + + PD + N ++
Sbjct: 477 ME--SNGIPPDQKAKNVLL 493
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 16/245 (6%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M+ G SP +++ L+ AY +G + AM + G +P T L F
Sbjct: 336 VLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFE 395
Query: 151 SKGLATKGLEILAAME----KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
G + I M K N A++ + R K+ E K+F GL
Sbjct: 396 RAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGN--RGKFTE-MMKIFDEINVCGLSP 452
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
++ ++A + G S + EM+ AG + FN L+S + CG E A +
Sbjct: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVY 512
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVEDHKRLQPNVKTYAL 325
M + + PD TYN V+ A R +++ + V AE+ ED R +PN TY
Sbjct: 513 RRML--DAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM-----ED-GRCKPNELTYCS 564
Query: 326 LVECF 330
L+ +
Sbjct: 565 LLHAY 569
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 11/215 (5%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M G P ++ L+ + G E AM + +AG +P T A +++G++G
Sbjct: 375 MAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRG- 433
Query: 155 ATKGLEILAAMEKINY-----DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
K E++ ++IN DI W L+ +N + + VF + G E
Sbjct: 434 --KFTEMMKIFDEINVCGLSPDI-VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERE 490
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ +I+ + G A+ + M AG +N +L+ A G+ E + M
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
E G KP+ TY ++ AY + + +AE
Sbjct: 551 EDGR--CKPNELTYCSLLHAYANGKEIGLMHSLAE 583
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 105/281 (37%), Gaps = 51/281 (18%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G S S+ L+ A+ +G + A++ K+ G +P T + +FG G T
Sbjct: 203 GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMG--TPW 260
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+I + +EK+ D G+ Y+ +I
Sbjct: 261 NKITSLVEKMKSD-------------------------------GIAPDAYTYNTLIT-C 288
Query: 219 CKAGD-HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
CK G H A ++ EM+AAG +N LL P+ A M +
Sbjct: 289 CKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVL--NGFS 346
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
P TYN +I AY R D + EL M E K +P+V TY L+ F + V
Sbjct: 347 PSIVTYNSLISAYARDGMLD---EAMELKNQMAE--KGTKPDVFTYTTLLSGFERAGKVE 401
Query: 338 EAIRHFRALQN---------YEGGTKVLHNEGNFGDPLSLY 369
A+ F ++N + K+ N G F + + ++
Sbjct: 402 SAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 116/279 (41%), Gaps = 42/279 (15%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP----LHETLI 143
V+ V +M AG P +F+ L+ AY+ G E AM +R L AGV P + L
Sbjct: 473 VSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLA 532
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
ALAR G+ + ++LA ME D R EL L + G + G
Sbjct: 533 ALAR----GGMWEQSEKVLAEME----DGRCK----PNELTYCSLLH----AYANGKEIG 576
Query: 204 LRAT--DEIYDLMIAED----------CKAGDHSNALEIAY-EMEAAGRMATTFHFNHLL 250
L + +E+Y +I C D E A+ E++ G N ++
Sbjct: 577 LMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMV 636
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA-ELLGMM 309
S + A + M+ E P TYN ++ ++R+ + + +++ E+L
Sbjct: 637 SIYGRRQMVAKANGVLDYMK--ERGFTPSMATYNSLMYMHSRSADFGKSEEILREILA-- 692
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
K ++P++ +Y ++ + + + +A R F ++N
Sbjct: 693 ----KGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRN 727
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 111/255 (43%), Gaps = 10/255 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P + + LV LNG A+ + R + G +P T + + G
Sbjct: 184 MVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQ 243
Query: 155 ATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+E+L ME+ N + + I+++ L ++ L++A +F G +A Y+
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNT 303
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFENMEYG 272
+I C AG + ++ +M F+ L+ G + E E M+ G
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRG 363
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ P+T TYN +I + + +R+++ +++ +M+ K P++ T+ +L+ + K
Sbjct: 364 ---IAPNTITYNSLIDGFCKE---NRLEEAIQMVDLMIS--KGCDPDIMTFNILINGYCK 415
Query: 333 YCAVTEAIRHFRALQ 347
+ + + FR +
Sbjct: 416 ANRIDDGLELFREMS 430
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 17/212 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LV L N + DA + R + G + + Y ++ CK+G + A+E+ +ME
Sbjct: 199 LVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN 258
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
++ ++ G + AF F ME K D TYN +I + A +D
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG--FKADIITYNTLIGGFCNAGRWD- 315
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR-ALQNYEGGTKVLH 357
D A+LL M++ +++ PNV T+++L++ F K + EA + + +Q + +
Sbjct: 316 --DGAKLLRDMIK--RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITY 371
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
N + C+E R+ E ++ ++ M
Sbjct: 372 NS---------LIDGFCKENRLEEAIQMVDLM 394
>gi|422292736|gb|EKU20038.1| hypothetical protein NGA_2025410 [Nannochloropsis gaditana CCMP526]
gi|422295019|gb|EKU22318.1| hypothetical protein NGA_2025420 [Nannochloropsis gaditana CCMP526]
Length = 527
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 112/291 (38%), Gaps = 47/291 (16%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R RD + + GL+P L+ AY + + A+ ++ L GV P
Sbjct: 27 RARDPDLAISIFKLAVERGLTPDAHCCSSLIKAYGMKKQADKALEVVRMMLELGVAPDLV 86
Query: 141 TLIA------------------------------------LARLFGSKGLATKGLEILAA 164
TL A L ++G +G + L +
Sbjct: 87 TLNAAMDACEKGKRPEEVLRLFREEVPRHGLVPDIFSYTVLVNMYGKRGELAEALALFE- 145
Query: 165 MEKINYDIRQ---AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKA 221
E + + A+ +++ V+ + A + R GL +Y+ ++ K
Sbjct: 146 -EAVACGLEPELPAYTAIIKAAVKKDDMGTALALLRRVFDSGLSPDARLYNTLLWGHTKR 204
Query: 222 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 281
+ S A++I MEA G + +++LLSC C EVA + + M + ++KP+ E
Sbjct: 205 LEWSKAMQILRLMEAKGLVPDRLTYSYLLSCLVDCNQLEVAQSLWREMR-DKGHVKPNLE 263
Query: 282 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
Y+ + + +A D Q V M R+QPN+ TY L+E F +
Sbjct: 264 LYSLAVDMFAKAG--DTTQAVTIFKEM---RRNRVQPNLVTYTALMEAFVR 309
>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1188
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 109/277 (39%), Gaps = 13/277 (4%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ L ++ +DA +V ++ + + P R F L+ + G A L +
Sbjct: 211 LLDALCKNGSVKDASKV----FEDMREKIPPNLRYFTSLLYGWCREGKLMEAKEVLVQMK 266
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRN-KYL 189
AG+ P L + G ++L M K Y+ + +L++ L R K +
Sbjct: 267 EAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRM 326
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
++A +VF+ + G A Y +I+ CK G + +M G M + + +
Sbjct: 327 DEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQI 386
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
L E E M+ + PD YN VI+ A ++ V++ L M
Sbjct: 387 LVAHEKKEQFEECLELIEKMK--QIGCHPDLLIYNVVIRL---ACNFREVKEAVRLWNEM 441
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ L P + +++ FT + EA HF+ +
Sbjct: 442 --EANGLSPGADMFVIMINGFTSQGYLIEACSHFKEM 476
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 12/214 (5%)
Query: 122 GAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILV 180
G + +++E + P E + L R F S + K +E+L M K ++ + + L+
Sbjct: 155 GLIEEMRKENPELIEP--ELFVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEYVFGCLL 212
Query: 181 EELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
+ L +N ++DA+KVF + + + ++ C+ G A E+ +M+ AG
Sbjct: 213 DALCKNGSVKDASKVF-EDMREKIPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLE 271
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
F +LLS A G A+ +M + +P+ Y +IQA R E +
Sbjct: 272 PDIVVFTNLLSGYAHAGKMADAYDLLNDMR--KRGYEPNANCYTVLIQALCRTE-----K 324
Query: 301 DVAELLGMMVEDHKR-LQPNVKTYALLVECFTKY 333
+ E + + VE + + ++ TY L+ F K+
Sbjct: 325 RMDEAMRVFVEMERYGCEADIVTYTALISGFCKW 358
>gi|387192495|gb|AFJ68660.1| hypothetical protein NGATSA_2025410, partial [Nannochloropsis
gaditana CCMP526]
Length = 527
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 112/291 (38%), Gaps = 47/291 (16%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R RD + + GL+P L+ AY + + A+ ++ L GV P
Sbjct: 27 RARDPDLAISIFKLAVERGLTPDAHCCSSLIKAYGMKKQADKALEVVRMMLELGVAPDLV 86
Query: 141 TLIA------------------------------------LARLFGSKGLATKGLEILAA 164
TL A L ++G +G + L +
Sbjct: 87 TLNAAMDACEKGKRPEEVLRLFREEVPRHGLVPDIFSYTVLVNMYGKRGELAEALALFE- 145
Query: 165 MEKINYDIRQ---AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKA 221
E + + A+ +++ V+ + A + R GL +Y+ ++ K
Sbjct: 146 -EAVACGLEPELPAYTAIIKAAVKKDDMGTALALLRRVFDSGLSPDARLYNTLLWGHTKR 204
Query: 222 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 281
+ S A++I MEA G + +++LLSC C EVA + + M + ++KP+ E
Sbjct: 205 LEWSKAMQILRLMEAKGLVPDRLTYSYLLSCLVDCNQLEVAQSLWREMR-DKGHVKPNLE 263
Query: 282 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
Y+ + + +A D Q V M R+QPN+ TY L+E F +
Sbjct: 264 LYSLAVDMFAKAG--DTTQAVTIFKEM---RRNRVQPNLVTYTALMEAFVR 309
>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Glycine max]
Length = 879
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 112/287 (39%), Gaps = 39/287 (13%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R R+ +N ++ M+ G P +++ L+ +Y A++ + G P
Sbjct: 394 GRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDR 453
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T L + G + + M+++ + +++ L ++ L A+++F
Sbjct: 454 VTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCE 513
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G Y+++IA KA ++ ALE+ +M+ AG ++ ++ CG
Sbjct: 514 MVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVLGHCGY 573
Query: 259 PEVAFATFENME----------YG----------------EDY-------MKPDTETYNC 285
E A A F M YG E Y + P+ T N
Sbjct: 574 LEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAGLLPNVPTCNS 633
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
++ A+ R R+ D LL MV L P+++TY LL+ C T+
Sbjct: 634 LLSAFLRVH---RLPDAYNLLQNMVT--LGLNPSLQTYTLLLSCCTE 675
>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
Length = 599
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 112/274 (40%), Gaps = 8/274 (2%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I+ + +A RD +M++ G+ F ++ Y G++E A H ++
Sbjct: 54 IYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKF 113
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYL 189
+ + P ++ + + G +LA ME+ + + ++ +
Sbjct: 114 KAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDE 173
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
E F R GL T Y ++ KAG+ + AL+I EM+ G + +
Sbjct: 174 EKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMI 233
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ A G AF +E+M +KPD YN ++ A+ +A D+ V E +
Sbjct: 234 MDGYARGGDFTAAFKVWEDMVSAG--LKPDIVIYNILVHAFCKAGRMDKALGVLENI--- 288
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+ RL P ++TY +++ + K + +A+ F
Sbjct: 289 --EANRLLPTIETYTSILDGYVKGGNIQKALEVF 320
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 135/329 (41%), Gaps = 26/329 (7%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D++ +M G+SP + ++ Y GD A + +SAG++P L F
Sbjct: 213 DILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAF 272
Query: 150 GSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G K L +L +E + + +++ V+ ++ A +VF R GLR
Sbjct: 273 CKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGV 332
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y+ +++ KA NA + EM A G + + L A G E AF F+
Sbjct: 333 VSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQR 392
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
M+ ++ + D Y +++A ++ + R +V + + H R+ TY +++
Sbjct: 393 MK--KENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRI-----TYCTMLD 445
Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEAL 386
+ + +++A R L N + G D + +++A R G E+ E L
Sbjct: 446 GWARKGELSKA----RDLLN------DMQKHGFHLDTICYTSFIKACFRSGDTEEVTETL 495
Query: 387 EAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
M + V +R Y TL+ W+
Sbjct: 496 AVMREKKLEVN------ARTYTTLIHGWL 518
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 113/266 (42%), Gaps = 11/266 (4%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L + R DA ++ D +M GL+P S++ LV Y G A+ GV
Sbjct: 235 LCKAGRMEDARKMFD---EMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGV 291
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANK 194
P T +L G + + ++ M + + + + L++ RN +L+DA
Sbjct: 292 VPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALL 351
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+ ++ + Y+++I CK G A E+ +EMEA G ++ +LS
Sbjct: 352 AMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYC 411
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G + AF N + + + PD TY+ +I+ R+ D EL M++
Sbjct: 412 KIGDTDSAFEL--NRKMLKKGVVPDAITYSSLIRGLCEER---RLGDACELFEKMLQ--L 464
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAI 340
LQP+ TY L++ K V +A+
Sbjct: 465 GLQPDEFTYTTLIDGHCKEGNVQKAL 490
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 105/258 (40%), Gaps = 13/258 (5%)
Query: 86 PRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL-SAGVRPLHETLIA 144
P ++ M+ G++P +++ LV A G E A+ + ++ AG P T
Sbjct: 136 PSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNT 195
Query: 145 LARLFGSKGLATKGLEILAAMEKINYDIRQAWLI---LVEELVRNKYLEDANKVFLRGAK 201
L F G ++ M + +R + + +V L + +EDA K+F A+
Sbjct: 196 LVAAFCRAGEVDAAERLVGVMREGG--VRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAR 253
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
GL Y+ +++ CKAG AL + EM G + F L+ G E
Sbjct: 254 EGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLER 313
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A A M E ++ + T+ +I + R D LL M R+QP+V
Sbjct: 314 AVALVGQMR--ERGLRMNEFTFTALIDGFCRNGFLDDA-----LLAMKEMRECRIQPSVV 366
Query: 322 TYALLVECFTKYCAVTEA 339
Y +L+ + K + EA
Sbjct: 367 CYNVLINGYCKLGRMDEA 384
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 22/255 (8%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK-- 157
+P R F L+ + G A H L + AG P ++ L G A K
Sbjct: 242 FNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEP---DIVVYNNLLGGYAQAGKMR 298
Query: 158 -GLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
++LA M+K+N A + IL++ + + +++A ++F G A Y +I
Sbjct: 299 DAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLI 358
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
+ CK G+ A EI +M G + + ++ E E ME E+
Sbjct: 359 SGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAH------EKKEELEECMELIEEM 412
Query: 276 MK----PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
K PD YN +I+ + +++ L G M L P + TY L+V F
Sbjct: 413 RKIGCVPDLNIYNTMIRLVCKLGD---LKEAVRLWGEM--QAGGLNPGLDTYILMVHGFL 467
Query: 332 KYCAVTEAIRHFRAL 346
+ EA +F+ +
Sbjct: 468 SQGCLVEACDYFKEM 482
>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
Length = 545
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 15/218 (6%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ L + + +++A +F G T Y+ MI CK G NAL + +M
Sbjct: 246 LIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREP 305
Query: 239 RMAT-TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
+ F ++ L++ E A+ +E M + PD TYN ++ ++ D
Sbjct: 306 HLKPDMFTYSALINGLNLSNRGEKAYELYEEML--DTGCSPDVVTYNTLLDGLCKSGCED 363
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+ ++ +G+ PNV TY +L++ F K + +A++ + ++ G +L
Sbjct: 364 KAMEIFRKMGV----GNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEME----GRSLLP 415
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP 395
+ F + ++ LC+E RI E E E++ K +P
Sbjct: 416 DAVTF----TTVIQKLCKESRIDEAHELFESIGKTCKP 449
Score = 41.6 bits (96), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 19/220 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ V+ + +EDA+ F K + Y+ ++ KAGD AL + EM+ +G
Sbjct: 108 LLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSG 167
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
H N +L + G +A+ F++M P+ +Y +I ++ D+
Sbjct: 168 IAVLRSH-NIVLRGLCSGGKISMAWEVFKDM---SGIFSPNLISYTIMIDGLCKSRKVDK 223
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF-RALQNYEGGTKVLH 357
L MV+ K + P+V TY L++ K V EA F A T V +
Sbjct: 224 ---AITLFKQMVD--KAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTY 278
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
N + LC+ GRI L + M ++ P
Sbjct: 279 NT---------MIDGLCKCGRIENALTLYDDMVREPHLKP 309
>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 111/271 (40%), Gaps = 34/271 (12%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M +G+SP +++ L+ AY G E A LK ++ V+P + +
Sbjct: 362 VVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYR 421
Query: 151 SKGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
KG K ++L ME N +R + ++++ + L+ A F R G+
Sbjct: 422 DKGEWQKSFQVLREME--NSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPD 479
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
++ +I C+AG H A E+ EM G FN +++ +F
Sbjct: 480 TVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTFNIMIN-------------SFG 526
Query: 268 NMEYGEDY-----------MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
+ E +D + P++ TY +I Y ++ R D E L M L
Sbjct: 527 DQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKS---GRFNDAIECLDDM--KAAGL 581
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+P+ Y L+ + + +A+ FRA++
Sbjct: 582 KPSSTMYNALINAYAQRGLSEQAVSAFRAMR 612
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 99/246 (40%), Gaps = 14/246 (5%)
Query: 99 GLSPGPRSFHGLVVAYTLNG---DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
GL P R+++ L+ Y G D E + ++R +GV P +T L +G+ G
Sbjct: 335 GLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMER---SGVSPNEQTYSFLIDAYGNAGRW 391
Query: 156 TKGLEILAAMEKINYDIRQAWLILVEELVRNK-YLEDANKVFLRGAKGGLRATDEIYDLM 214
+L ME N + R+K + + +V G+R Y++M
Sbjct: 392 ESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVM 451
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I K +A+ M + G T +N L+ C G + A FE M G
Sbjct: 452 IDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGG- 510
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
P T+N +I ++ E +D DV LL M + L PN TY L++ + K
Sbjct: 511 -YSPCNTTFNIMINSFGDQERWD---DVKNLLAHM--RSQGLVPNSVTYTTLIDIYGKSG 564
Query: 335 AVTEAI 340
+AI
Sbjct: 565 RFNDAI 570
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 97/248 (39%), Gaps = 34/248 (13%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M +G+ P ++ ++ + + AM + R LS G+ P T L
Sbjct: 432 VLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHC 491
Query: 151 SKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G + E+ M + Y + I++ + +D + GL
Sbjct: 492 RAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSV 551
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y +I K+G ++A+E +M+AAG ++ +N L++ A G+ E A + F M
Sbjct: 552 TYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAM 611
Query: 270 E-----------------YGED-----------YM-----KPDTETYNCVIQAYTRAESY 296
+GED YM KPD TY +++A R E +
Sbjct: 612 RVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKF 671
Query: 297 DRVQDVAE 304
D+V V E
Sbjct: 672 DKVPSVYE 679
>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 999
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 116/291 (39%), Gaps = 46/291 (15%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R + ++ DM G+ P ++ + Y+ +G+ + A K LS+G+ P +
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNN 591
Query: 140 ETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFL 197
L + G + L M + + DIR A+ ++ L +N ++A VFL
Sbjct: 592 VIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIR-AYSAIIHSLSKNGKTKEAMGVFL 650
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC- 256
+ K G+ +Y+ +I+ CK GD A ++ EM G +N L++ C
Sbjct: 651 KFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCK 710
Query: 257 -GIPEVAFATFENMEYGEDYMKPDTETY-------------------------------- 283
G AF F+ M + PD Y
Sbjct: 711 SGNLTEAFKLFDEMI--SKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLS 768
Query: 284 --NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
N +I ++ + + +V + EL MV+ K+L PN+ TY +L++ + K
Sbjct: 769 AFNSLIDSFCK---HGKVIEARELFDDMVD--KKLTPNIVTYTILIDAYGK 814
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/378 (20%), Positives = 150/378 (39%), Gaps = 51/378 (13%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-- 137
+ D + N+V+ MI G+ P + L+ AY +E A+ LK ++ GV P
Sbjct: 462 CHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDL 521
Query: 138 --LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195
+ +I L R +K + + ++ EK + + ++ ++ A +
Sbjct: 522 FCYNCLIIGLCR---AKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERY 578
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F G+ + IY ++I C G+ AL M G + ++ ++ +
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSK 638
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G + A F +++ + + PD YN +I + + ++ ++L M+ H
Sbjct: 639 NGKTKEAMGVF--LKFLKTGVVPDVFLYNSLISGFCKE---GDIEKASQLYDEML--HNG 691
Query: 316 LQPNVKTYALLVECFTKYCA---VTEAIRHFRALQN---------YEGGTKVLHNEGNFG 363
+ PN+ Y L+ + YC +TEA + F + + Y EGN
Sbjct: 692 INPNIVVYNTLINDY-GYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLE 750
Query: 364 DPLSLY-----------------LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRK 406
LSL+ + + C+ G++IE E + M ++ + P +
Sbjct: 751 KALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMV--DKKLTPNIV----T 804
Query: 407 YRTLVSSWIEP-LQEEAE 423
Y L+ ++ + + EEAE
Sbjct: 805 YTILIDAYGKAEMMEEAE 822
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 111/276 (40%), Gaps = 11/276 (3%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ ++ +A R+ D +MI GL +++ ++ G+ AM L
Sbjct: 352 LIDGFIKEGNIEEALRIKD---EMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEML 408
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLE 190
AG+ P T L + K E+LA M+ + +L+ L + L+
Sbjct: 409 MAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQ 468
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
AN+V + + G++ +Y +I + + A+E+ M A G + F +N L+
Sbjct: 469 KANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLI 528
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
C +V A ++ GE +KP+ TY I Y+++ +Q M+
Sbjct: 529 I--GLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKS---GEIQVAERYFKDML 583
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ PN Y +L++ EA+ F+ +
Sbjct: 584 SSG--IVPNNVIYTILIKGHCDVGNTVEALSTFKCM 617
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 112/258 (43%), Gaps = 14/258 (5%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP- 137
+ ++ D + +++ +M A L+P P ++ L+ + D + A L + + GV+P
Sbjct: 426 YLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPN 485
Query: 138 --LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195
++ TLI +A + L+I+ A + D+ + L+ L R K +E+A +
Sbjct: 486 VFMYGTLIKAYVQESRYEMAIELLKIMIA-NGVLPDLF-CYNCLIIGLCRAKKVEEAKML 543
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+ + G++ Y I K+G+ A +M ++G + + L+
Sbjct: 544 LVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCD 603
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G A +TF+ M E + PD Y+ +I + ++ E +G+ ++ K
Sbjct: 604 VGNTVEALSTFKCML--EKGLIPDIRAYSAIIHSLSKN------GKTKEAMGVFLKFLKT 655
Query: 316 -LQPNVKTYALLVECFTK 332
+ P+V Y L+ F K
Sbjct: 656 GVVPDVFLYNSLISGFCK 673
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 86/376 (22%), Positives = 143/376 (38%), Gaps = 65/376 (17%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV+ MI G +P +F+ LV + G+ + A L ++ G+RP ++ + L
Sbjct: 113 DVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRP---NVVTYSALI 169
Query: 150 GSKGLATKGLEILAAMEKINYDIRQ----AWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
+ K LE +E++ + L+ L + +E+A ++ R A G
Sbjct: 170 DGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCT 229
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA- 264
+Y +I CK+G A + EM + +N ++ C + ++A A
Sbjct: 230 PDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVID--GLCKLGKIAEAQ 287
Query: 265 -TFENMEYGEDYMKPDTETYNCVIQAYTRAE----------------------SYDRVQD 301
+ M+ D + PD TY+ VI +++ +Y + D
Sbjct: 288 VILDQMQESGDVL-PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIID 346
Query: 302 VAELLGMMVEDHKRLQ--------PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
G + E LQ PNV TY L+ K V EA R
Sbjct: 347 GLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAER------------ 394
Query: 354 KVLHNEGNFGDPLSL-----YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYR 408
V+ N G P +L + LC GRI E + ++ M P A YR
Sbjct: 395 -VMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDA----ATYR 449
Query: 409 TLVSSWIEP-LQEEAE 423
T+V++ + L +EAE
Sbjct: 450 TIVNALMSSDLVQEAE 465
Score = 46.6 bits (109), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 127/315 (40%), Gaps = 31/315 (9%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+++ +M +AG +P + ++ A GD +GAM L+ S G P T AL F
Sbjct: 11 ELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLR---SMGCDPNVVTYTALIAAF 67
Query: 150 GSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+ +++L M + + Y+ +LV+ L + + A V + +G
Sbjct: 68 ARAKKLEEAMKLLEEMRERGCPPNLVTYN------VLVDALCKLSMVGAAQDVVKKMIEG 121
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G ++ ++ CK G+ +A ++ M A G ++ L+ C +
Sbjct: 122 GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALI--DGLCKSQKFL 179
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
A E + PD TY+ +I +A D++++ ++L M P+V
Sbjct: 180 EAKEVLEEMKASGVTPDAFTYSALIHGLCKA---DKIEEAEQMLRRMA--GSGCTPDVVV 234
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL 382
Y+ ++ F K + EA + + ++ V+ + + LC+ G+I E
Sbjct: 235 YSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVV--------TYNTVIDGLCKLGKIAEA 286
Query: 383 LEALEAMAKDNQPVP 397
L+ M + +P
Sbjct: 287 QVILDQMQESGDVLP 301
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
C AGD ALE+ EM++AG F +++ A G + A +M G D P
Sbjct: 1 CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM--GCD---P 55
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
+ TY +I A+ RA+ ++++ +LL M E + PN+ TY +LV+ K V
Sbjct: 56 NVVTYTALIAAFARAK---KLEEAMKLLEEMRE--RGCPPNLVTYNVLVDALCKLSMVGA 110
Query: 339 A 339
A
Sbjct: 111 A 111
>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 120/275 (43%), Gaps = 18/275 (6%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
F L+ AY G+ GA L G P + AL +G G I M+
Sbjct: 149 FLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQ 208
Query: 167 KINYDIRQ-AWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAEDCKAG 222
+ + I+++ V ++A +VF L K L+ ++Y +MI KAG
Sbjct: 209 SSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAG 268
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
++ A ++ M G +T +N L+S + + EV+ ++ M+ + ++PD +
Sbjct: 269 NYEKARKVFSSMVGKGVPQSTVTYNSLMSFETS--YKEVS-KIYDQMQRSD--IQPDVVS 323
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRH 342
Y +I+AY RA R ++ + M++ R P K Y +L++ F V +A
Sbjct: 324 YALLIKAYGRAR---REEEALSVFEEMLDAGVR--PTHKAYNILLDAFAISGMVEQAKTV 378
Query: 343 FRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
F++++ ++ + ++ LS Y+ A EG
Sbjct: 379 FKSMRR----DRIFPDLWSYTTMLSAYVNASDMEG 409
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 9/220 (4%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
IYD M + + P S+ L+ AY E A+ + L AGVRP H+ L F
Sbjct: 308 IYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 367
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G+ + + +M ++I D+ ++ ++ V +E A K F R G
Sbjct: 368 ISGMVEQAKTVFKSMRRDRIFPDL-WSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNI 426
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y +I KA D +E+ +M +G A ++ C A ++
Sbjct: 427 VTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKE 486
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
ME + PD + N ++ + A + D +++ EL G+
Sbjct: 487 MESCG--VPPDQKAKNVLL---SLASTQDELEEAKELTGI 521
>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
Length = 798
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 114/277 (41%), Gaps = 13/277 (4%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
M L ++ R+ +A ++ D M+ G P ++ L+ Y G H L +
Sbjct: 314 LMGYLCKNGRSMEARKIFD---SMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMV 370
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYL 189
G++P H L + G + + + M + +N D + I+++ L +
Sbjct: 371 RNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDT-VTYGIVMDALCMVGKV 429
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+DA F R GL ++ +I C A E+A EM G FN L
Sbjct: 430 DDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTL 489
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
L+ G+ A F+ M + ++ D TYN +I Y + +V + A+LL M
Sbjct: 490 LNHLCKEGMVARAKNIFDLMVRVD--VQRDVITYNTLIDGYCL---HGKVDEAAKLLEGM 544
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
V D ++PN TY ++ + K + +A FR +
Sbjct: 545 VLD--GVKPNEVTYNTMINGYCKNGRIEDAFSLFRQM 579
>gi|219885281|gb|ACL53015.1| unknown [Zea mays]
gi|414866677|tpg|DAA45234.1| TPA: hypothetical protein ZEAMMB73_414823 [Zea mays]
Length = 559
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 83/199 (41%), Gaps = 8/199 (4%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
++P SF V G + A +L ++ G RP T A+ +G TK +
Sbjct: 174 VAPDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAM 233
Query: 160 EILAAMEKINYD--IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+L AM + + IR + LV L LE+A ++ + L T +IY I
Sbjct: 234 EVLDAMCGLGCEPTIRT-YNSLVGGLCYVGRLEEALELLKKLKDSPL--TPDIYTFTIVL 290
Query: 218 D--CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED- 274
D CK G A I ++ G TTF +N LL+ G P AFA M D
Sbjct: 291 DGFCKVGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDA 350
Query: 275 YMKPDTETYNCVIQAYTRA 293
PD ++ V+ A RA
Sbjct: 351 ACLPDKTSFGIVLTALLRA 369
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 90/216 (41%), Gaps = 8/216 (3%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDA 192
GV P T L + K L +L M++ + A+ L+ L + K E A
Sbjct: 404 GVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAA 463
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
N++F + + +Y +MI K G S A+++ EM+ G + +N L+S
Sbjct: 464 NELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSG 523
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G+ A + ME E+ D ++N ++ + R R ++ E +
Sbjct: 524 MVKAGMVNEANSLLRKME--ENGCTADINSHNIILNGFARTGVPRRAIEMFETM-----K 576
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
H ++P+ TY L+ CF EA R R +++
Sbjct: 577 HCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKD 612
Score = 40.4 bits (93), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 19/221 (8%)
Query: 181 EELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
E+L RN + A ++F ++ T++IY ++ K G AL++ EM+ AG
Sbjct: 244 EKLGRN---DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCS 300
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
T + + L+ G E A+ ++NM D + PD N ++ + + +
Sbjct: 301 PTVYTYTELIKGLGKAGRVEEAYDLYKNML--TDGLTPDVVFLNNLMNILGKVGRLEELT 358
Query: 301 DVAELLGMMVEDHKRLQPNVKTYALLVEC-FTKYCAVTEAIRHFRALQNYEGGTKVLHNE 359
+V +G R P V +Y +++ F V+E F ++ V +E
Sbjct: 359 NVFNEMGTW-----RCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMK----ADGVSPSE 409
Query: 360 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 400
+ S+ + C+ R+ + L LE M + P P A
Sbjct: 410 FTY----SILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAA 446
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 82/372 (22%), Positives = 147/372 (39%), Gaps = 47/372 (12%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R+ + + ++ +M G +P +++ LV A G + A L++ + G P
Sbjct: 112 CRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPP-- 169
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI-------------LVEELVRN 186
LI + KGL +G EI AA ++ + ++I +++ L +
Sbjct: 170 -ELITFGLII--KGLCKEG-EIEAAFRVVD----EMFMIESGLSPDVITFNSVLDGLCKE 221
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+ + DA+ VF R + G R Y +I K AL++ +M G A T +
Sbjct: 222 QRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTY 281
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
+ ++ G E A M + PD TYN +I + + + R+++ LL
Sbjct: 282 STVVDGLLKVGRMEDAVVVLRQMR--DAGCLPDAVTYNTLIDGFFKRQ---RLREAVGLL 336
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL 366
M+E P+V TY L + EA+ + +Y N +
Sbjct: 337 REMLE--AGFHPSVVTYTTLCHGLCRSGRFDEAVE----ILDYMAARGCAPNAITY---- 386
Query: 367 SLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGY 426
S + LC+ GR+ E L E MA+D P + S+ I+ L + ++
Sbjct: 387 SSIVDGLCKAGRVTEALGYFEKMARDEVVAP---------HVIAYSALIDGLCKAGKIDE 437
Query: 427 EIDYIARYISEG 438
+++ R I G
Sbjct: 438 AYEFLERMIRAG 449
Score = 40.4 bits (93), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 126/329 (38%), Gaps = 30/329 (9%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
+ ++ L + A RV D ++ MI +GLSP +F+ ++ A + KR
Sbjct: 176 LIIKGLCKEGEIEAAFRVVDEMF-MIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRA 234
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYL 189
L G RP T L + L++LA M ++ + +V+ L++ +
Sbjct: 235 LERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRM 294
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
EDA V + G Y+ +I K A+ + EM AG + + L
Sbjct: 295 EDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTL 354
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMK-----PDTETYNCVIQAYTRAESYDRVQDVAE 304
C C F+ DYM P+ TY+ ++ +A RV +
Sbjct: 355 --CHGLC-----RSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKA---GRVTEALG 404
Query: 305 LLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 364
M D + + P+V Y+ L++ K + EA YE +++ G D
Sbjct: 405 YFEKMARD-EVVAPHVIAYSALIDGLCKAGKIDEA---------YEFLERMIR-AGRIPD 453
Query: 365 --PLSLYLRALCREGRIIELLEALEAMAK 391
S+ + LC GRI LE MA+
Sbjct: 454 VVTFSILINGLCDAGRIDTGLELFRGMAE 482
Score = 39.7 bits (91), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 5/166 (3%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ L++ L R+ ++ K+ A G Y+ ++ G A + +M
Sbjct: 104 YSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMA 163
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
A G F ++ G E AF + M E + PD T+N V+ + +
Sbjct: 164 ANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQ- 222
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
R+ D + +E + +PNV TY+ L++ +K + EA++
Sbjct: 223 --RILDAHNVFKRALE--RGCRPNVVTYSTLIDGLSKMAKMDEALQ 264
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 98/236 (41%), Gaps = 10/236 (4%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAA-GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG 134
L++ R A +V D +M++ G++P +F+ L+ + +NG + G
Sbjct: 194 LLKRGRTNMAKKVYD---EMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFG 250
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR---QAWLILVEELVRNKYLED 191
P T L G T ++ M K + D+ + L+ + +E
Sbjct: 251 CEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEK 310
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLL 250
A VF GL+A + Y+ +I C+A +I G + T FN L+
Sbjct: 311 ALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLM 370
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
C G + A FE M E ++PD+ TY+ ++++ + Y++ +D+ + L
Sbjct: 371 HCHCHAGNLDDALKVFERMS--ELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKL 424
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 20/223 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA- 237
L+ R +++ KVF G+ + ++ ++ K G + A ++ EM +
Sbjct: 155 LMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTY 214
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENME-YGEDYMKPDTETYNCVIQAYTRAESY 296
G TF FN L+ G+ + F F ++ +G +PD TYN ++ RA
Sbjct: 215 GVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFG---CEPDVVTYNTLVDGLCRAGKV 271
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 356
+V + +G D L PNV TY L+ YCA E +AL +E +
Sbjct: 272 TVAYNVVKGMGKKSVD---LNPNVVTYTTLIR---GYCAKREIE---KALAVFEE----M 318
Query: 357 HNEGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDNQPVP 397
N+G + ++ ++ LC + ++ + LE A D P
Sbjct: 319 VNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSP 361
>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
Length = 773
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 109/267 (40%), Gaps = 23/267 (8%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ +++ DM + +F L+ AY NG +E ++H L R V P T +
Sbjct: 100 KCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVL 159
Query: 147 RLFGSKGLATKG-LEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
GL +G L + A M E I D+ + L+ +E A VF + G
Sbjct: 160 NACSKGGLDWEGLLNLFAQMRHEGIQPDLI-TYNTLLSACSSRGLVEQAAMVFKTMNESG 218
Query: 204 LRATDEIYDLMIAEDCKAGDHSNAL----EIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
+ A Y ++ D AG SN L E+ EME G +N L+ A G
Sbjct: 219 VVADAVTYKSLV--DTFAG--SNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNV 274
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ-- 317
A F+ M+ G PD ETY+ +++ Y +++V+ + D K L
Sbjct: 275 HGAAGVFKQMQRGG--CAPDVETYSTLLRIYGNQGCFEQVRS-------LFSDMKDLSTP 325
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFR 344
P V TY L++ F + E+I F
Sbjct: 326 PTVATYNSLIQVFGEGGYFQESINLFH 352
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 109/266 (40%), Gaps = 8/266 (3%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
RV +++ +M G P ++ L+ AY G+ GA K+ G P ET L
Sbjct: 241 RVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLL 300
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
R++G++G + + + M+ ++ A + L++ Y +++ +F G++
Sbjct: 301 RIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVK 360
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
D Y +++ + G A +I M + L+S + + A +
Sbjct: 361 PDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVS 420
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+ + E + P Y+ +IQ Y + Y V+ + L M + Q V +
Sbjct: 421 YYRIR--EAGLDPQVSAYDALIQGYAKGGLY--VEAGSTLYAM---NKAGFQAPVSSVNS 473
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEG 351
++E ++K EA+ F LQ EG
Sbjct: 474 VMEAYSKVGLHDEALEFFSELQQKEG 499
>gi|297792331|ref|XP_002864050.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
gi|297309885|gb|EFH40309.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
Length = 723
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 84/213 (39%), Gaps = 44/213 (20%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D M GL P S+ L+ AY+++G HE A S + G++P ET +L F
Sbjct: 471 DAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMWMEGIKPSVETYTSLLDAF 530
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G K +EI W +++ E ++ G R T
Sbjct: 531 RRSGDTEKLMEI--------------WKLMLREKIK-----------------GTRIT-- 557
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG----IPEVAFAT 265
Y+ ++ K G + A ++ E G + +N L++ A G +P++
Sbjct: 558 -YNTLLDGFAKQGLYIEARDVVSEFGKMGLQPSVMTYNMLMNAYARGGQDAKLPQLL--- 613
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
E +KPD+ TY+ +I A+ R + R
Sbjct: 614 ---KEMAALNLKPDSITYSTMIYAFVRVRDFKR 643
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 160 EILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+ AM KIN D +++ + ++ ++F + + G++ + +++ ++
Sbjct: 294 EVYEAMNKINVFPDNVTCAIMITTMRKAGRSAKEVWEIFEKMSDKGVKWSQDVFGGLVKS 353
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
C G AL I EME G + T +N L+ E F E +K
Sbjct: 354 FCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFA--EIKAKGLK 411
Query: 278 PDTETYNCVIQAYTRAESYDRVQ-DVAELLGMMVEDHKRLQPNVKTYALLVECF 330
P TYN ++ AY R R+Q D+ E L +ED L+PNVK++ L+ +
Sbjct: 412 PTAATYNILMDAYAR-----RMQPDIVETLLREMEDLG-LEPNVKSFTCLISAY 459
Score = 43.1 bits (100), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 110/280 (39%), Gaps = 31/280 (11%)
Query: 58 GSVVSAAEQGLRLIFMEE--LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYT 115
G V S ++GL+ EE ++Q + R N ++Y+ L+ AY
Sbjct: 349 GLVKSFCDEGLK----EEALVIQTEMEKKGIRSNTIVYNT--------------LMDAYN 390
Query: 116 LNGDHEGAMHSLKRELSA-GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR- 173
+H + L E+ A G++P T L + + +L ME + +
Sbjct: 391 -KSNHIEEVEGLFAEIKAKGLKPTAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNV 449
Query: 174 QAWLILVEELVRNKYLED-ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
+++ L+ R K + D A FLR K GL+ + Y +I +G H A
Sbjct: 450 KSFTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFE 509
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
EM G + + LL G E ++ M + +K TYN ++ + +
Sbjct: 510 EMWMEGIKPSVETYTSLLDAFRRSGDTEKLMEIWKLML--REKIKGTRITYNTLLDGFAK 567
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
Y +DV G M LQP+V TY +L+ + +
Sbjct: 568 QGLYIEARDVVSEFGKM-----GLQPSVMTYNMLMNAYAR 602
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 118/270 (43%), Gaps = 23/270 (8%)
Query: 125 HSLKRELSAGVRPLHETLIALARL---FGSKGLATKGLEILAAMEKINYDIRQAWLILVE 181
H L RE + + L A+ ++ +G+ +K +E LA + Y + IL++
Sbjct: 84 HMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQME-LAGLSPDIYTLS----ILID 138
Query: 182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA 241
+ ++ A VF + K GL+ ++ +I CK G + A+E + EA+G
Sbjct: 139 CFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQP 198
Query: 242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
T + + +++ G A F+ ME E +P+ TYN +I + + + + D
Sbjct: 199 TVYTYTTIINGLCKIGETTAAAGLFKKME--EAGCQPNVVTYNILIDSLCKDKLVNEALD 256
Query: 302 VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGN 361
+ + KR+ P++ TY L++ + EA AL N ++ N
Sbjct: 257 IFSYM-----KAKRISPDIFTYNSLIQGLCNFRRWKEA----SALLNEMTSLNIMPNIFT 307
Query: 362 FGDPLSLYLRALCREGRIIELLEALEAMAK 391
F ++ + A+C+EG++ E + M +
Sbjct: 308 F----NVLVDAICKEGKVSEAQGVFKTMTE 333
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 121/329 (36%), Gaps = 59/329 (17%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V MI GL P +F+ L+ G A+ ++G +P T +
Sbjct: 152 VFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLC 211
Query: 151 SKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G T + ME+ + IL++ L ++K + +A +F +
Sbjct: 212 KIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIF 271
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC------------- 256
Y+ +I C A + EM + M F FN L+ A C
Sbjct: 272 TYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLV--DAICKEGKVSEAQGVFK 329
Query: 257 -----GI-PEVAFATFENMEYGE-------------DYM-----KPDTETYNCVIQAYTR 292
G+ P+V T+ ++ YG D M KPD +YN +I+ Y +
Sbjct: 330 TMTEMGVEPDVV--TYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCK 387
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
A+ R+ + +L M+ H+ L P+ Y L+ + + EA F
Sbjct: 388 AK---RIDEAKQLFNEMI--HQGLTPDNVNYNTLIHGLCQLGRLREAQDLF--------- 433
Query: 353 TKVLHNEGNFGDPL--SLYLRALCREGRI 379
K +H+ GN D S+ L C+EG +
Sbjct: 434 -KNMHSNGNLPDLFTYSMLLDGFCKEGYL 461
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 119/312 (38%), Gaps = 63/312 (20%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ +M + + P +F+ LV A G A K GV P T +L +
Sbjct: 292 LLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYS 351
Query: 151 SKGLATKGLEILAAMEKINYDIRQ-------AWLILVEELVRNKYLEDANKVFLRGAKGG 203
+ +EI+ A + + I + ++ IL++ + K +++A ++F G
Sbjct: 352 LR------MEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQG 405
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
L + Y+ +I C+ G A ++ M + G + F ++ LL G AF
Sbjct: 406 LTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAF 465
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
F M+ Y+KPD YN +I A + + ++D +L + + L PNV+ Y
Sbjct: 466 RLFRVMQ--STYLKPDIAMYNILIDAMCK---FGNLKDARKLFSELFV--QGLLPNVQIY 518
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELL 383
T +++N LC+EG + E L
Sbjct: 519 -----------------------------TTIINN--------------LCKEGLLDEAL 535
Query: 384 EALEAMAKDNQP 395
EA M D P
Sbjct: 536 EAFRNMEGDGCP 547
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 3/159 (1%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+MI GL+P +++ L+ G A K S G P T L F +G
Sbjct: 400 EMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEG 459
Query: 154 LATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
K + M+ + DI + IL++ + + L+DA K+F GL +IY
Sbjct: 460 YLGKAFRLFRVMQSTYLKPDIAM-YNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIY 518
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+I CK G ALE ME G F +N ++
Sbjct: 519 TTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVII 557
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 139/341 (40%), Gaps = 55/341 (16%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+VN V+ +MI +G +P F+ L+ Y G+ EGA+ +S + P TL +L
Sbjct: 331 KVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLM 390
Query: 147 RLFGSKG---LATKGL-EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+ F A L EIL++ I+ D + +V L + A +
Sbjct: 391 QGFCKSDQIEHAENALEEILSSGLSIHPDNCYS---VVHWLCKKFRYHSAFRFTKMMLSR 447
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG---IP 259
R +D + +++ CK G H A E+ + + G A+ N L+ CG +P
Sbjct: 448 NFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALI--HGLCGAGKLP 505
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYT---RAESYDRVQDVAELLGMMVEDHKR- 315
E + E +E G + D TYN +I + + E R+++ E KR
Sbjct: 506 EASRIVKEMLERG---LPMDRITYNALILGFCNEGKVEGCFRLRE---------EMTKRG 553
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIR---HFRA-------------LQNYEGGTKVLHNE 359
+QP++ TY L+ + +AI+ F+A ++ Y ++ E
Sbjct: 554 IQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVE 613
Query: 360 GNFGDPLS-----------LYLRALCREGRIIELLEALEAM 389
F + LS + ++A C+ G + L+ LE M
Sbjct: 614 NLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENM 654
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 32/229 (13%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL--MIAEDCKAGDHSNALEIAYEME 235
L+ LV+ E +VF ++G A +++ +I CK G NA+E+ +ME
Sbjct: 214 FLLSSLVKANEFEKCCEVFRVMSEG---ACPDVFSFTNVINALCKGGKMENAIELFMKME 270
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
G +N +++ G + AF E M ++P+ +TY +I +
Sbjct: 271 KLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKG--VQPNLKTYGALINGLIKLNF 328
Query: 296 YDRVQDVA-ELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354
+D+V V E++G PNV + L++ + K + N EG K
Sbjct: 329 FDKVNHVLDEMIG------SGFNPNVVVFNNLIDGYCK-------------MGNIEGALK 369
Query: 355 ---VLHNEGNFGDPLSLY--LRALCREGRIIELLEALEAMAKDNQPVPP 398
V+ ++ ++LY ++ C+ +I ALE + + P
Sbjct: 370 IKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHP 418
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 62/340 (18%), Positives = 130/340 (38%), Gaps = 36/340 (10%)
Query: 86 PRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA-GVRPLHETLIA 144
P + ++ +M+ GL +++ L++ + G EG L+ E++ G++P T
Sbjct: 505 PEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFR-LREEMTKRGIQPDIYTYNF 563
Query: 145 LARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGG 203
L R + G +++ + + I++E + +ED +F
Sbjct: 564 LLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKK 623
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
+ +Y+++I C+ G+ + AL++ M++ G + ++ L+ G+ E A
Sbjct: 624 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAK 683
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVEDHKRLQPNVKT 322
+ M ++ P+ Y +I Y + D + E++ + PN T
Sbjct: 684 HLIDEMR--KEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISF------NIHPNKFT 735
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL---HNEGNFGDPLS--LYLRALCREG 377
Y ++++ + K L N E +L G D ++ + C+
Sbjct: 736 YTVMIDGYCK-------------LGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKAN 782
Query: 378 RIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP 417
+ + + MA + PV Y TLV W P
Sbjct: 783 DMDNAFKVCDQMATEGLPVD------EITYTTLVHGWNPP 816
>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 124/309 (40%), Gaps = 26/309 (8%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M G++P ++ LV AYT G E A LK + GV+P + F
Sbjct: 326 VLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFR 385
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+G K +L M R + ++++ + L A VF R G+
Sbjct: 386 DRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVV 445
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ +I CK G H A+E+ EM + T +N +++ + + E M
Sbjct: 446 TWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGE----QERWVGVETM 501
Query: 270 --EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
E E + P+ TY ++ Y R+ Y D E + L+P+ Y LV
Sbjct: 502 MSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAM-----KADGLKPSPTMYHALV 556
Query: 328 ECFTKYCAVTEAIRHFRALQ--NYEGGTKVLHNEGN-FGDPLSLYLRALCREGRIIELLE 384
+ + A+ +A++ E T VL++ N FG+ + R++E
Sbjct: 557 NAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGE-----------DRRVVEAFS 605
Query: 385 ALEAMAKDN 393
L+ M +++
Sbjct: 606 VLQFMKEND 614
Score = 46.6 bits (109), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 17/223 (7%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV M G+ P +++ L+ A+ G H+ AM K + P T + L
Sbjct: 430 DVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLL 489
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLI--------LVEELVRNKYLEDANKVFLRGAK 201
G + E +E + ++++ L+ LV+ R+ ++A
Sbjct: 490 GEQ-------ERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKA 542
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
GL+ + +Y ++ + G +AL + M A G A+T N L++
Sbjct: 543 DGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRVVE 602
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
AF+ + M+ E+ +PD TY +++A R E +D+V + E
Sbjct: 603 AFSVLQFMK--ENDFRPDVITYTTLMKALIRVEQFDKVPVIYE 643
Score = 46.6 bits (109), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 106/253 (41%), Gaps = 13/253 (5%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
DA + ++ D+ + L P F L+ A+ + A+ L + G+ P +
Sbjct: 213 DAAILERLLGDLRDSRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVT 272
Query: 144 ALARLFGSKGLATKG----LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
AL G G + LE A E I R A+ L++ V+ L++A V
Sbjct: 273 ALISALGIAGRVPEAEALFLEFFLAGE-IKPRTR-AYNALLKGYVKIGSLKNAEHVLDEM 330
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
++ G+ + Y L++ +AG +A + EMEA G +++ F+ +L+ G
Sbjct: 331 SECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDW 390
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
+ AFA M ++PD YN +I + + DV + + ++P+
Sbjct: 391 QKAFAVLREMHASG--VQPDRHFYNVMIDTFGKYNCLGHAMDVFNRM-----RGEGIEPD 443
Query: 320 VKTYALLVECFTK 332
V T+ L++ K
Sbjct: 444 VVTWNTLIDAHCK 456
>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 35/229 (15%)
Query: 191 DANKVFLRGAKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
D ++ F R G G+ T Y++MI CK GD A + +M+ G +N L
Sbjct: 114 DLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTL 173
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G+ + + FE M++ +PD TYN +I ++ + + R + +
Sbjct: 174 IDGYGKIGLLDESVCLFEEMKFMG--CEPDVITYNALINSFCKFKGMLRAFEFFREM--- 228
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ---------NYEGGTKVLHNEG 360
K L+PNV +Y+ L++ K + AI+ F + Y G
Sbjct: 229 --KDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAG 286
Query: 361 NFGDPLSL------------------YLRALCREGRIIELLEALEAMAK 391
N G+ L L LC EG + E E AM K
Sbjct: 287 NLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGK 335
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 15/201 (7%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L LV LE A + FLR K + + + KAG+ + + +M AG
Sbjct: 68 LFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAG 127
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
T F +N ++ G A + FE M+ + + PD TYN +I Y + D
Sbjct: 128 IAPTVFTYNIMIGHVCKEGDMLTARSLFEQMK--KMGLTPDIVTYNTLIDGYGKIGLLDE 185
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
+ E + M +P+V TY L+ F K+ + A FR +++ + V+
Sbjct: 186 SVCLFEEMKFM-----GCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVI-- 238
Query: 359 EGNFGDPLSLYLRALCREGRI 379
S + ALC+EG +
Sbjct: 239 ------SYSTLIDALCKEGMM 253
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 75/410 (18%), Positives = 153/410 (37%), Gaps = 40/410 (9%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D DM+ AG++P +++ ++ GD A ++ G+ P T L +
Sbjct: 118 DFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGY 177
Query: 150 GSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G GL + + + M+ + D+ + L+ + K + A + F L+
Sbjct: 178 GKIGLLDESVCLFEEMKFMGCEPDV-ITYNALINSFCKFKGMLRAFEFFREMKDKDLKPN 236
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y +I CK G A++ +M G + F ++ L+ G AF +
Sbjct: 237 VISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLAD 296
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M ++++ + TY ++ + +++ +G + PN++ Y L+
Sbjct: 297 EML--QEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMG-----KAGVTPNLQAYTALI 349
Query: 328 ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
K ++ +A+ F ++ + +L + LC E ++ E +
Sbjct: 350 HGHIKVRSMDKAMELFNEMREKDIKPDIL--------LWGTIVWGLCSESKLEECKIIMT 401
Query: 388 AMAKDNQPVPPRAMILSRKYRTLVSSW---------IEPLQEEAELGYEIDYIARY---- 434
M + P Y TL+ ++ I L+E +LG E+ +
Sbjct: 402 EMKESGIGANPVI------YTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALID 455
Query: 435 -ISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKK 483
+ + GL E + R L P+ +Y+ ++ K C+ D KK
Sbjct: 456 GLCKRGLVQEAIYYFGRMPDHDLQPNVA--VYTALIDGLCKNNCIGDAKK 503
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 106/262 (40%), Gaps = 49/262 (18%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALAR 147
++ D G P ++ L+ +GD + A++ + G++P L TL+
Sbjct: 342 ILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLV---- 397
Query: 148 LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
KGL+ +GL IL A++ L+ E+ N G
Sbjct: 398 ----KGLSQQGL-ILQALK------------LMNEMSEN----------------GCSPD 424
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+L+I CK G S+A + + A G + F FN L+ + A +
Sbjct: 425 IWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVD 484
Query: 268 NM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
M +G + PD TYN ++ +A Y +DV +M+E K PN+ TY +L
Sbjct: 485 RMWNHG---VSPDVITYNSILNGLCKAGKY---EDVMGTFKLMME--KGCVPNIITYNIL 536
Query: 327 VECFTKYCAVTEAIRHFRALQN 348
E F K V EA+ +QN
Sbjct: 537 TESFCKARKVEEALNLIEEMQN 558
>gi|357159753|ref|XP_003578548.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Brachypodium distachyon]
Length = 460
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 10/262 (3%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R+ R V+ D I G+ P +++ L+ A+ + L+R AGV P
Sbjct: 21 CRSGSLERAESVLIDAILLGMPPDVVTYNTLLAAHCRAAGLDAGFAVLRRMREAGVWPNA 80
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFL 197
T +L GL + L++ M + AW +L+ L R+ + EDA +VF
Sbjct: 81 VTYNSLIVAASRVGLTMRALDLFDEMLRAGIA-PDAWSYNVLMHCLFRSGHPEDAYRVFA 139
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
A+ G+ Y+ ++ KAG +NA + ++ G +N +++ C
Sbjct: 140 DMAEKGVTPCTTTYNTLLDGLFKAGHATNAYRMFRYLQRVGLPVGIVTYNTMIN--GLCR 197
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+V +A E G P+ TY V++ R +D Q + L ++ H
Sbjct: 198 SGKVGYARMILRELGRTEHTPNAVTYTTVMKCCFRYGRFD--QGLETFLSLLEGGH---I 252
Query: 318 PNVKTYALLVECFTKYCAVTEA 339
P+V Y ++ K V EA
Sbjct: 253 PDVFPYCTVISALVKKGRVEEA 274
>gi|115465970|ref|NP_001056584.1| Os06g0111300 [Oryza sativa Japonica Group]
gi|113594624|dbj|BAF18498.1| Os06g0111300 [Oryza sativa Japonica Group]
Length = 978
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 19/212 (8%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
Q + I++ + LE A ++F + GL ++ Y M++ KAG H A +
Sbjct: 717 QTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSFYGKAGKHHEASLLFSR 776
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+ G FN +++ AT G+ A F+ M+ ++ PD+ TY +I+AYT
Sbjct: 777 MKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQ--KNNHVPDSHTYLALIRAYTEG 834
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
+ Y + + E + MM+ + + P+ + L+ F K + EA R + ++ E G
Sbjct: 835 KCYSKAE---EAIQMMLRSN--MTPSCTHFNHLISAFLKEGQIDEAQRMYNQME--EAGI 887
Query: 354 KV----------LHNEGNFGDPLSLYLRALCR 375
+H + + D L+ CR
Sbjct: 888 PADLACCRTMMRMHLDHGYVDDGILFFETACR 919
>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
Length = 1202
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 98/236 (41%), Gaps = 10/236 (4%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P +++ L+ + GD E A + + GV P ET L +G K K
Sbjct: 792 GMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKC 851
Query: 159 LEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
++L ME N + ++ L+ L + L +A V G+ IY+++I
Sbjct: 852 FDLLKEMED-NGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLID 910
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
C G +A + EM G +N L+ + G ++A A +E +
Sbjct: 911 GCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNG--KLAEAEDMLLEISRKGL 968
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
KPD TYN +I Y A + R + E + ++P +KTY LL+ TK
Sbjct: 969 KPDVFTYNSLISGYRFAGNVQRCIALYEEM-----KTSGIKPTLKTYHLLISLCTK 1019
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 17/167 (10%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
IL+ L + +E A ++ R GL + +Y+ MI + GD A ME
Sbjct: 732 ILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQ 791
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK-----PDTETYNCVIQAYTR 292
G +N L+ + C + ++ EN E + MK P ETYN +I Y R
Sbjct: 792 GMKPDHLAYNCLI--RTFCELGDM-----ENAEQEVNKMKLKGVSPSVETYNILIGGYGR 844
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+D+ D+ + + ED+ + PNV +Y L+ C K + EA
Sbjct: 845 KYEFDKCFDLLKEM----EDNGTM-PNVVSYGTLINCLCKGSKLLEA 886
Score = 40.4 bits (93), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 15/186 (8%)
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
++F R + T IY+++I CK +A ++ EM A + + +N L+
Sbjct: 573 ELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGY 632
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
G PE +F E M+ D ++P T+N +++ +A V+D +L M +
Sbjct: 633 CKDGNPEKSFKVRERMK--ADNIEPSLITFNTLLKGLFKA---GMVEDAENVLTEMKD-- 685
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 373
+ P+ T+++L F Y + +A AL YE T V S+ L AL
Sbjct: 686 QGFVPDAFTFSIL---FDGYSSNDKAD---AALGVYE--TAVDSGLKMNAYTCSILLNAL 737
Query: 374 CREGRI 379
C+EG+I
Sbjct: 738 CKEGQI 743
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 104/248 (41%), Gaps = 10/248 (4%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
++ AA +P S+ L+ + G E A+ + + G +P T L G G
Sbjct: 34 ELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAG 93
Query: 154 LATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
+ L +LA M D+R + L+ L + L +A +F + G Y
Sbjct: 94 QFDEALRLLAEMRDNGCVPDVR-TYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTY 152
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+ +I K G A+E+ EME G ++ L++ G AF F+ M+
Sbjct: 153 NSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMK- 211
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
KPD+ T+ ++ A +A RV D ELL M E + ++P V TY L+ F
Sbjct: 212 -RRGRKPDSITFTALMDALGKA---GRVDDALELLDEMKE--RGVKPGVVTYNALIAGFG 265
Query: 332 KYCAVTEA 339
K + EA
Sbjct: 266 KVGDLVEA 273
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 101/255 (39%), Gaps = 10/255 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ +M G P R+++ L+ G A G P T +L G
Sbjct: 101 LLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLG 160
Query: 151 SKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G + K +E+L ME+ D+ + L+ L ++ A K+F + G +
Sbjct: 161 KVGRSQKAMELLEEMERHGCPPDV-MTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDS 219
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+ ++ KAG +ALE+ EM+ G +N L++ G A+ +
Sbjct: 220 ITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDE 279
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
M+ + KPD TY+C+I +A D V + + + + P+ TY L+
Sbjct: 280 MK--RNGCKPDVVTYSCLITGLIKASQLDEACQVLKKM-----EKEGCPPDTITYNTLIN 332
Query: 329 CFTKYCAVTEAIRHF 343
K + +A R F
Sbjct: 333 GLGKAGLLNDAGRLF 347
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 85/401 (21%), Positives = 141/401 (35%), Gaps = 91/401 (22%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
M+ L + R DA + D +M G+ PG +++ L+ + GD A + L
Sbjct: 225 LMDALGKAGRVDDALELLD---EMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMK 281
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELV 184
G +P T L + ++L MEK I Y+ L+ L
Sbjct: 282 RNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNT------LINGLG 335
Query: 185 RNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTF 244
+ L DA ++F R G Y +I KA +A + EME+ G F
Sbjct: 336 KAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLF 395
Query: 245 HFNHLLSCQATCG-----------------IPEV----AFAT--------------FENM 269
+ +++ G P+V AF FE+M
Sbjct: 396 TYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDM 455
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYD-------------------RVQDVAELL---G 307
+ E + PD TY+ ++ ++ + D + + E+L G
Sbjct: 456 K--ESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWG 513
Query: 308 MMVEDHKRLQ--------PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 359
+ E H+ LQ P +Y L++ K V+EA L+ G ++
Sbjct: 514 NVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVS-- 571
Query: 360 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 400
S + AL + G+I E LE M+K + PR+
Sbjct: 572 ------YSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRS 606
Score = 43.9 bits (102), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 38/187 (20%)
Query: 246 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR-VQDVAE 304
+N LL+ A G E A FE ++ + PD +Y+C+I + RA ++ ++ VAE
Sbjct: 12 YNSLLNALAKAGQCEEAQLLFEELKAAK--WTPDVVSYSCLINSLGRAGKWEAALEVVAE 69
Query: 305 LLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN---------YEGGTKV 355
+ K +PN+ TY LV+C K EA+R +++ Y
Sbjct: 70 M------QAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLIST 123
Query: 356 LHNEGNFGDPLSLY------------------LRALCREGRIIELLEALEAMAKDNQPVP 397
L G + +L+ + L + GR + +E LE M + P
Sbjct: 124 LGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEM--ERHGCP 181
Query: 398 PRAMILS 404
P M S
Sbjct: 182 PDVMTYS 188
>gi|388851710|emb|CCF54706.1| uncharacterized protein [Ustilago hordei]
Length = 1372
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 20/257 (7%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H R + + +M G+ P ++ L+ + L D E A H+L+ ++AGV P
Sbjct: 690 HVRRTNVDAALAIFDEMKEFGVQPDKYTYTILINGFALRRDPESAAHALRAMIAAGVTPD 749
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY------LEDA 192
T AL + GL + + A M K + D+R I + ++ Y ++
Sbjct: 750 RITYAALLNCYVESGLYDAAIRLFAWM-KSHRDVRLRPTIEICNIILKAYVLSSMPVQKV 808
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA---------GRMATT 243
++ + + GL Y LM+ C AG A EI E E A + A
Sbjct: 809 MELVGKVREMGLNPNTNTYALMLQSACDAGLMHLAEEIFTEAERALPSLTGVGYEQGANL 868
Query: 244 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303
+HF ++ G A F+ M+ + + P + T+N ++++Y +E+
Sbjct: 869 YHFTIMIHGYLRLGEHTEAKEYFDEMQSRK--LTPSSITWNIMVRSYAHSENEATYDLAC 926
Query: 304 ELLGMMV--EDHKRLQP 318
L+ +V E K +P
Sbjct: 927 TLVSQLVAHESKKTFRP 943
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+LV+ VR ++ A +F + G++ Y ++I D +A M AA
Sbjct: 685 LLVDMHVRRTNVDAALAIFDEMKEFGVQPDKYTYTILINGFALRRDPESAAHALRAMIAA 744
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY-MKPDTETYNCVIQAYTRAESY 296
G + LL+C G+ + A F M+ D ++P E N +++AY S
Sbjct: 745 GVTPDRITYAALLNCYVESGLYDAAIRLFAWMKSHRDVRLRPTIEICNIILKAYVL--SS 802
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVE--CFTKYCAV-----TEAIRHFRALQ-- 347
VQ V EL+G + E L PN TYAL+++ C + TEA R +L
Sbjct: 803 MPVQKVMELVGKVRE--MGLNPNTNTYALMLQSACDAGLMHLAEEIFTEAERALPSLTGV 860
Query: 348 NYEGGTKVLH 357
YE G + H
Sbjct: 861 GYEQGANLYH 870
>gi|414887787|tpg|DAA63801.1| TPA: hypothetical protein ZEAMMB73_367984 [Zea mays]
Length = 711
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 24/226 (10%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
+ ++ Y +N D E A+ L+ L G+RP H T++++ L +G E+ A
Sbjct: 436 LNSMIRGYVVNKDSESALRLLRALLKEGLRPDHVTVVSVLPLCNQPSRLLQGKELHA--Y 493
Query: 167 KINYDIRQAWLI---LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD 223
I ++I + + L + + LE ANK+FL + R T Y+ +I+ K G
Sbjct: 494 AIRHNISSCFSVTNALTDMYCKCGCLEIANKIFLLMTE---RNT-VTYNTLISSLGKHGH 549
Query: 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY-MKPDTET 282
A + M+ G F LLSC + G+ + +++M DY + PD E
Sbjct: 550 ADQAFILFDLMKRDGVSPDKVTFVALLSCCSHGGLIDKGLCFYDSML--RDYNIPPDKEH 607
Query: 283 YNCVIQAYTRAESYD-------RVQDVAEL--LGMMVE---DHKRL 316
Y+C++ Y+R+ D +Q+V E+ LG ++ DH R+
Sbjct: 608 YSCIVDLYSRSGKLDDAWSFIANLQEVPEIDVLGCLLSACRDHHRM 653
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 129/303 (42%), Gaps = 19/303 (6%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L + R DA R+ + DMI ++P +F L+ A+ G A + +
Sbjct: 96 LCNYGRWSDASRL---LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 152
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANK 194
P T +L F + ++ M K + + L++ + K +E+ +
Sbjct: 153 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 212
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
VF ++ GL Y+++I +AGD A EI EM + G +N LL
Sbjct: 213 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 272
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G E A FE ++ + M+P TYN +I+ +A +V+D +L + K
Sbjct: 273 KNGKLEKAMVVFEYLQRSK--MEPTIYTYNIMIEGMCKA---GKVEDGWDLFCNL--SLK 325
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 374
++P+V Y ++ F + + EA F+ ++ E GT L N G + + +RA
Sbjct: 326 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMK--EDGT--LPNSGCY----NTLIRARL 377
Query: 375 REG 377
R+G
Sbjct: 378 RDG 380
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 117/292 (40%), Gaps = 28/292 (9%)
Query: 124 MHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI---LV 180
M + R ++ G +P T + +G +L ME+ + LI ++
Sbjct: 1 MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ--GKLEPGVLIYNTII 58
Query: 181 EELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
+ L + K+++DA +F G+R Y +I+ C G S+A + +M
Sbjct: 59 DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN 118
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
F F+ L+ G A ++ M + + P TY+ +I + +DR+
Sbjct: 119 PDVFTFSALIDAFVKEGKLVEAEKLYDEMV--KRSIDPSIVTYSSLINGFCM---HDRLD 173
Query: 301 DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL-QNYEGGTKVLHNE 359
+ ++ MV H P+V TY L++ F KY V E + FR + Q G V +N
Sbjct: 174 EAKQMFEFMVSKH--CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN- 230
Query: 360 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV 411
+ ++ L + G E + M D VPP M Y TL+
Sbjct: 231 --------ILIQGLFQAGDCDMAQEIFKEMVSDG--VPPNIM----TYNTLL 268
>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
Length = 646
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 9/170 (5%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
++ ++N + ++A ++F + G Y+ ++ K G H A E+ EMEAAG
Sbjct: 151 MITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAG 210
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+N L++ A G+ + A A +++ + PD TY +I A+ RAE Y++
Sbjct: 211 ISPNIVTYNELIAAYARAGLCDEAAALKKSLL--SKGLCPDEFTYCTLISAFNRAERYEK 268
Query: 299 VQDVAELLGMMVEDHK-RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
L E K PN+ TY +L++ + + + + ++ F+ +Q
Sbjct: 269 A------LETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQ 312
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 3/217 (1%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARL 148
++++ +M AAG+SP +++ L+ AY G + A K LS G+ P T L
Sbjct: 200 SELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISA 259
Query: 149 FGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
F K LE M K N + IL++ R + L+D KVF +
Sbjct: 260 FNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPD 319
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
++ ++ G + + EM+ AG M FN L+ C CG + + ++
Sbjct: 320 LVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYK 379
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
+ ++P T+ ++ + R + + + V++
Sbjct: 380 GLL--RTGLQPTVPTFAALMASLAREGRWQQCEKVSQ 414
Score = 48.1 bits (113), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 31/269 (11%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V++V +M AG PG +F+ L+ Y G + ++ K L G++P T AL
Sbjct: 339 VSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMA 398
Query: 148 LFGSKG-----------LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF 196
+G +A GL++ A + ++ + KY+++ K
Sbjct: 399 SLAREGRWQQCEKVSQEMAEAGLQLSDACHA---GLIHSYANSGQFFQLRKYIDELEKSA 455
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ G L T + L + C + AL Y+ G FN ++S A
Sbjct: 456 KQPLSGILCKT---FVLAYCKCCMDNEAQLALNQLYD---NGHSPDIKVFNAMISMCAKR 509
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G E A E + + +KPD TYNC++ Y R Y + ++V + + +R
Sbjct: 510 GWIERAVKLLEEIRKAQ--LKPDGVTYNCLMSMYGREGMYHKAEEV-------MSEMRRA 560
Query: 317 --QPNVKTYALLVECFTKYCAVTEAIRHF 343
PN+ TY L+ +TK+ + +A R F
Sbjct: 561 GKAPNLITYNTLLYSYTKHGRMDDAARVF 589
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 11/252 (4%)
Query: 77 MQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVR 136
+Q++ ++A R+ +M AG P +++ L+ Y G H+ A L +AG+
Sbjct: 156 IQNSHCQEALRL---FQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGIS 212
Query: 137 PLHETLIALARLFGSKGLATKGLEILAA-MEKINYDIRQAWLILVEELVRNKYLEDANKV 195
P T L + GL + + + + K + L+ R + E A +
Sbjct: 213 PNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALET 272
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F K Y+++I + + +++ M+ +N LL
Sbjct: 273 FTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGN 332
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
CG+ F M+ YM P +T+N +I+ Y R D D+ + G++
Sbjct: 333 CGMLTEVSNVFREMKRA-GYM-PGVDTFNILIECYGRCGYVDYSVDIYK--GLL---RTG 385
Query: 316 LQPNVKTYALLV 327
LQP V T+A L+
Sbjct: 386 LQPTVPTFAALM 397
>gi|115463017|ref|NP_001055108.1| Os05g0294600 [Oryza sativa Japonica Group]
gi|113578659|dbj|BAF17022.1| Os05g0294600 [Oryza sativa Japonica Group]
gi|125551683|gb|EAY97392.1| hypothetical protein OsI_19323 [Oryza sativa Indica Group]
gi|215697097|dbj|BAG91091.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630985|gb|EEE63117.1| hypothetical protein OsJ_17925 [Oryza sativa Japonica Group]
Length = 757
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 14/230 (6%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDA 192
GV+ + I+L ++F GL T+ L I +AMEK + + L+ + +E+A
Sbjct: 369 GVKWSLDICISLIKIFCDNGLKTEALIIQSAMEKKGIASNTSMYNTLINAYCKANQIEEA 428
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
VF+ + GL AT Y++++ C+ + EM+ G +N L+
Sbjct: 429 EGVFVEMKEKGLSATAMTYNILMGAYCRRLQPEVVESLLLEMQDLGLRPNARSYNFLIRV 488
Query: 253 QATC-GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
+ E A F M+ D + P + TY ++ AY V + E +
Sbjct: 489 YGQQKKMSEKAEDAFLRMK--TDGIMPTSSTYTSLLCAYA-------VNGLHEKAYLTYV 539
Query: 312 DHKR--LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE-GGTKVLHN 358
D KR L+P+++TY L++ F + + + +R++ N + GT+V+ +
Sbjct: 540 DMKREGLKPSLETYTALIDMFRRAGDTEKLMETWRSMINEKVPGTRVIFH 589
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 55/248 (22%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHS---LKRELSAGVRPLHETLI 143
+ D M G+ P ++ L+ AY +NG HE A + +KRE G++P ET
Sbjct: 498 KAEDAFLRMKTDGIMPTSSTYTSLLCAYAVNGLHEKAYLTYVDMKRE---GLKPSLETYT 554
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
AL +F G K +E W ++ E V
Sbjct: 555 ALIDMFRRAGDTEKLME--------------TWRSMINEKV------------------- 581
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG----IP 259
T I+ +++ K G + A ++ YE AG T +N L++ A G +P
Sbjct: 582 -PGTRVIFHMVLDGLAKHGLYVQATDVIYEFRRAGLQPTVMTYNILMNAFARGGQHYKLP 640
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
++ ME +KPD+ TY+ +I AY R + R +L MV + P+
Sbjct: 641 QL-LKEMAAME-----LKPDSVTYSTMIYAYARVRDFSRAFYYHKL---MVRSGQ--LPD 689
Query: 320 VKTYALLV 327
V +Y L+
Sbjct: 690 VSSYKKLL 697
>gi|413917024|gb|AFW56956.1| hypothetical protein ZEAMMB73_276172 [Zea mays]
Length = 666
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GL +Y++ + CK G+ + A+++ EM A G + H+ L++ G E A
Sbjct: 398 GLHLDGVLYNIAMDAYCKLGNMNEAVKLLTEMMAGGLVPDKIHYTCLINGYCLKGEMENA 457
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ FE M ++ +KPD TYN + Y+R + +V D+ E MM ++ L+PN T
Sbjct: 458 WQVFEQML--KENVKPDVVTYNILASGYSRNGTVIKVYDLLE--HMM---NQGLEPNSLT 510
Query: 323 YALLVECFTKYCAVTEA 339
Y + + F + ++EA
Sbjct: 511 YGVAITSFCRGGNLSEA 527
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 98/236 (41%), Gaps = 10/236 (4%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAA-GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG 134
L++ R A +V D +M++ G++P +F+ L+ + +NG + G
Sbjct: 194 LLKRGRTNMAKKVYD---EMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFG 250
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR---QAWLILVEELVRNKYLED 191
P T L G T ++ M K + D+ + L+ + +E
Sbjct: 251 CEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEK 310
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLL 250
A VF GL+A + Y+ +I C+A +I G + T FN L+
Sbjct: 311 ALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLM 370
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
C G + A FE M E ++PD+ TY+ ++++ + Y++ +D+ + L
Sbjct: 371 HCHCHAGNLDDALKVFERMS--ELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKL 424
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 20/223 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA- 237
L+ R +++ KVF G+ + ++ ++ K G + A ++ EM +
Sbjct: 155 LMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTY 214
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENME-YGEDYMKPDTETYNCVIQAYTRAESY 296
G TF FN L+ G+ + F F ++ +G +PD TYN ++ RA
Sbjct: 215 GVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFG---CEPDVVTYNTLVDGLCRAGKV 271
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 356
+V + +G D L PNV TY L+ YCA E +AL +E +
Sbjct: 272 TVAYNVVKGMGKKSVD---LNPNVVTYTTLIR---GYCAKREIE---KALAVFEE----M 318
Query: 357 HNEGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDNQPVP 397
N+G + ++ ++ LC + ++ + LE A D P
Sbjct: 319 VNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSP 361
>gi|55295905|dbj|BAD67773.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 1013
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 19/212 (8%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
Q + I++ + LE A ++F + GL ++ Y M++ KAG H A +
Sbjct: 752 QTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSFYGKAGKHHEASLLFSR 811
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+ G FN +++ AT G+ A F+ M+ ++ PD+ TY +I+AYT
Sbjct: 812 MKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQ--KNNHVPDSHTYLALIRAYTEG 869
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
+ Y + + E + MM+ + + P+ + L+ F K + EA R + ++ E G
Sbjct: 870 KCYSKAE---EAIQMMLRSN--MTPSCTHFNHLISAFLKEGQIDEAQRMYNQME--EAGI 922
Query: 354 KV----------LHNEGNFGDPLSLYLRALCR 375
+H + + D L+ CR
Sbjct: 923 PADLACCRTMMRMHLDHGYVDDGILFFETACR 954
>gi|218197431|gb|EEC79858.1| hypothetical protein OsI_21342 [Oryza sativa Indica Group]
Length = 1013
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 19/212 (8%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
Q + I++ + LE A ++F + GL ++ Y M++ KAG H A +
Sbjct: 752 QTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSFYGKAGKHHEASLLFSR 811
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+ G FN +++ AT G+ A F+ M+ ++ PD+ TY +I+AYT
Sbjct: 812 MKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQ--KNNHVPDSHTYLALIRAYTEG 869
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
+ Y + + E + MM+ + + P+ + L+ F K + EA R + ++ E G
Sbjct: 870 KCYSKAE---EAIQMMLRSN--MTPSCTHFNHLISAFLKEGQIDEAQRMYNQME--EAGI 922
Query: 354 KV----------LHNEGNFGDPLSLYLRALCR 375
+H + + D L+ CR
Sbjct: 923 PADLACCRTMMRMHLDHGYVDDGILFFETACR 954
>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 117/282 (41%), Gaps = 10/282 (3%)
Query: 70 LIFMEELMQ-HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
++F+ LM + + +V +M +P S++ ++ A + H + S
Sbjct: 338 VVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWF 397
Query: 129 RELSA-GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRN 186
++ A V P T L + K L +L M++ + A+ L+ L +
Sbjct: 398 DKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKA 457
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
K E A+++F + + +Y +MI K G S A+++ EM+ G + +
Sbjct: 458 KRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
N L+S G+ A + ME E+ + D ++N ++ + R R ++ E +
Sbjct: 518 NALMSGMVKAGMINEANSLLRKME--ENGCRADINSHNIILNGFARTGVPRRAIEMFETI 575
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
H ++P+ TY L+ CF EA R R +++
Sbjct: 576 -----KHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKD 612
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 19/221 (8%)
Query: 181 EELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
E+L RN + A ++F ++ T++IY ++ K G AL++ EM+ AG
Sbjct: 244 EKLGRN---DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCS 300
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
T + + L+ G + A+ +++M D + PD N ++ + + +
Sbjct: 301 PTVYTYTELIKGLGKAGRVDEAYGFYKDML--RDGLTPDVVFLNNLMNILGKVGRVEELT 358
Query: 301 DVAELLGMMVEDHKRLQPNVKTYALLVEC-FTKYCAVTEAIRHFRALQNYEGGTKVLHNE 359
+V +GM R P V +Y +++ F V+E F ++ V +E
Sbjct: 359 NVFSEMGMW-----RCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK----ADSVSPSE 409
Query: 360 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 400
+ S+ + C+ R+ + L LE M + P P A
Sbjct: 410 FTY----SILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAA 446
>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
Length = 834
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 116/298 (38%), Gaps = 48/298 (16%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
+N ++ M+ G P +++ L+ +Y A+ + AG P T L
Sbjct: 357 INKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLID 416
Query: 148 LFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+ G +E+ M+ + +++ L + +L A+K+F + G
Sbjct: 417 IHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVP 476
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y++MIA KA ++ NAL++ +M+ AG ++ ++ G + A A F
Sbjct: 477 NLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIF 536
Query: 267 ENME----------YG----------------EDY-------MKPDTETYNCVIQAYTRA 293
M+ YG E Y + P+ T N ++ A+ R
Sbjct: 537 SEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRV 596
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK---------YCAVTEAIRH 342
+R+ D LL M+ + L P+++TY LL+ C T+ YC + H
Sbjct: 597 ---NRLPDAYNLLQSML--NLGLNPSLQTYTLLLSCCTEARSPYDMGCYCELMSVTGH 649
>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 31/223 (13%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
IL+ L + +E A +V + GL + IY+ ++ C+ GD A+ +ME+
Sbjct: 247 ILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESR 306
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK--------PDTETYNCVIQA 289
G FN ++ F + ++ E+++K P ETYN +I
Sbjct: 307 GLRPNCIAFNSVID----------KFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDG 356
Query: 290 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
Y R + R + E M E+ ++ PNV +Y L+ C K + EA R +
Sbjct: 357 YGRLCVFSRCFQILE---EMEENGEK--PNVISYGSLINCLCKDGKILEAEMVLRDMV-- 409
Query: 350 EGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392
G VL N + ++ + C G++ E L + M+K+
Sbjct: 410 --GRGVLPN----ANIYNMLIDGSCTVGKLREALRFFDEMSKN 446
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 65/318 (20%), Positives = 123/318 (38%), Gaps = 47/318 (14%)
Query: 62 SAAEQGL---RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG 118
S E GL +I+ + + + D R I M + GL P +F+ ++ +
Sbjct: 267 SLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQ 326
Query: 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK----------- 167
+ A +K+ + G+ P ET L +G + ++ +IL ME+
Sbjct: 327 MIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYG 386
Query: 168 --INYDIRQAWLILVEELVR-----------NKY------------LEDANKVFLRGAKG 202
IN + ++ E ++R N Y L +A + F +K
Sbjct: 387 SLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKN 446
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ AT Y+ +I CK G A E+ + + + G +N L+S + G +
Sbjct: 447 GIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKC 506
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+E M+ + +KP T++ +I ++ + E+L M L P+
Sbjct: 507 LELYETMK--KLGLKPTINTFHPLISGCSKEGIKLKETLFNEMLQM------NLSPDRVV 558
Query: 323 YALLVECFTKYCAVTEAI 340
Y ++ C+ + V +A
Sbjct: 559 YNAMIHCYQETGHVQKAF 576
>gi|414879991|tpg|DAA57122.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 868
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 123/298 (41%), Gaps = 37/298 (12%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
S+ GL+ YT + A+ L+ ++ G+ P T++A+ + G G +
Sbjct: 578 SWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYC 637
Query: 166 EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD--------LMIAE 217
EK I+ + V N ++ K+ + L+ DE+ D +I+
Sbjct: 638 EKKG--------IMSDARVGNSLIDLYAKI--GSVQNSLKVFDEMLDRRNLVSWTSIISG 687
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
G ALE+ EM AG F +++ + G+ E A F++M Y E +
Sbjct: 688 FAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVY-EYNID 746
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
P+ + + C+I RA + + E L M V NV + +L+ C +KY V
Sbjct: 747 PEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEV--------NVTVWRILLGCCSKYGEVA 798
Query: 338 ---EAIRHFRALQNYEGG-----TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
AI+ L+ GG + VL G F D + R L + +I++L EA E
Sbjct: 799 MGERAIKMISDLERESGGDFAVLSNVLTELGRFSD--AEQARKLLDQRKIVKLQEAGE 854
>gi|296082982|emb|CBI22283.3| unnamed protein product [Vitis vinifera]
Length = 626
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 5/220 (2%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D +MI GL PG + ++ A G + A+ + L+ G++P AL
Sbjct: 344 DAYSEMIQNGLKPGEDAMKAIIGACAKEGKWDLALSVFQSMLNVGLKPNLIACNALINSI 403
Query: 150 GSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G G + M+ + + D+ W L+ L R DA +F + +
Sbjct: 404 GKSGNVKLAFRVYDVMKSLGHTPDV-YTWNALLGALYRANQHADALHLFESIREQSSQVN 462
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
+Y+ + K G + AL++ ++MEA+G ++ +N ++ PE+A +E
Sbjct: 463 LHLYNTALMSCQKLGLWNRALQLLWQMEASGLSVSSASYNLVIGACEVARKPEIALQVYE 522
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
+M + PDT T+ +I++ + V+++ G
Sbjct: 523 HMV--QQQCTPDTFTHLSLIRSCIWGSLWAEVKEILNRAG 560
>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
Length = 668
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 120/271 (44%), Gaps = 19/271 (7%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
DA + ++ D+ + L P F L+ A+ + A+ L + G+ P +
Sbjct: 208 DAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVT 267
Query: 144 ALARLFGSKGLATKG----LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
AL GS G + LE A E I R A+ L++ VR L++A +V
Sbjct: 268 ALISALGSAGRVAEAEALFLEFFLAGE-IKPRTR-AYNALLKGYVRIGSLKNAEQVLDEM 325
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
++ G+ + Y L++ +AG +A + EMEA G +++ F+ +L+ G
Sbjct: 326 SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDW 385
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
+ AFA M+ ++PD YN +I + + Y+ + + M E+ ++P+
Sbjct: 386 QKAFAVLREMQASG--VRPDRHFYNVMIDTFGK---YNCLGHAMDAFDRMREEE--IEPD 438
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
V T+ L++ K RH RA++ +E
Sbjct: 439 VVTWNTLIDAHCK------GGRHDRAMELFE 463
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 104/259 (40%), Gaps = 10/259 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M G++P ++ LV AYT G E A LK + GV+P + F
Sbjct: 321 VLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFR 380
Query: 151 SKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G K +L M+ + D R + ++++ + L A F R + +
Sbjct: 381 DRGDWQKAFAVLREMQASGVRPD-RHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDV 439
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
++ +I CK G H A+E+ EM + T +N +++ E A
Sbjct: 440 VTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSE 499
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
M+ E + P+ TY ++ Y R+ Y D E + L+P+ Y LV
Sbjct: 500 MK--EQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAM-----KADGLKPSPTMYHALVN 552
Query: 329 CFTKYCAVTEAIRHFRALQ 347
+ + A+ +A++
Sbjct: 553 AYAQRGLADHALNVVKAMK 571
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 129/303 (42%), Gaps = 19/303 (6%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L + R DA R+ + DMI ++P +F L+ A+ G A + +
Sbjct: 915 LCNYGRWSDASRL---LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 971
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANK 194
P T +L F + ++ M K + + L++ + K +E+ +
Sbjct: 972 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 1031
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
VF ++ GL Y+++I +AGD A EI EM + G +N LL
Sbjct: 1032 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 1091
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G E A FE ++ + M+P TYN +I+ +A +V+D +L + K
Sbjct: 1092 KNGKLEKAMVVFEYLQRSK--MEPTIYTYNIMIEGMCKA---GKVEDGWDLFCNL--SLK 1144
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 374
++P+V Y ++ F + + EA F+ ++ E GT L N G + + +RA
Sbjct: 1145 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMK--EDGT--LPNSGCY----NTLIRARL 1196
Query: 375 REG 377
R+G
Sbjct: 1197 RDG 1199
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 110/259 (42%), Gaps = 23/259 (8%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L +R DA R+ + DMI ++P ++ L+ A+ NG A + + +
Sbjct: 338 LCNSSRWSDAARL---LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSI 394
Query: 136 RP---LHETLIALARLFGSKGLATKGLEILAA----MEKINYDIRQAWLILVEELVRNKY 188
P + +LI L A + +++ + + ++Y+ L+ + K
Sbjct: 395 DPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNT------LINGFCKAKR 448
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+ED K+F ++ GL + Y+ +I +AGD A E +M+ G + +N
Sbjct: 449 VEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNI 508
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
LL G E A FE+M+ E M D TY VI+ + +V++ L
Sbjct: 509 LLGGLCDNGELEKALVIFEDMQKRE--MDLDIVTYTTVIRGMCKT---GKVEEAWSLFCS 563
Query: 309 MVEDHKRLQPNVKTYALLV 327
+ K L+P++ TY ++
Sbjct: 564 L--SLKGLKPDIVTYTTMM 580
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 76/350 (21%), Positives = 119/350 (34%), Gaps = 86/350 (24%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M G P +F+ L+ L+ AM + R ++ G +P T + +G
Sbjct: 791 MFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGD 850
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+L ME+ G L IY+ +
Sbjct: 851 TDLAFNLLNKMEQ----------------------------------GKLEPGVLIYNTI 876
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I CK +AL + EME G ++ L+SC G A +M E
Sbjct: 877 IDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI--ER 934
Query: 275 YMKPDTETYNCVIQAYTR------AES--------------------------YDRVQDV 302
+ PD T++ +I A+ + AE +DR+ +
Sbjct: 935 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 994
Query: 303 AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL-QNYEGGTKVLHNEGN 361
++ MV H P+V TY L++ F KY V E + FR + Q G V +N
Sbjct: 995 KQMFEFMVSKH--CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN--- 1049
Query: 362 FGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV 411
+ ++ L + G E + M D VPP M Y TL+
Sbjct: 1050 ------ILIQGLFQAGDCDMAQEIFKEMVSDG--VPPNIM----TYNTLL 1087
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 103/275 (37%), Gaps = 47/275 (17%)
Query: 73 MEELMQHARNRDAPRVNDVI---YDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+ E + R RD ++ND I DM+ + P F+ L+ A ++ + K+
Sbjct: 155 LRERLSKTRLRDI-KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKK 213
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKY 188
G+R T + F + L IL M K+ Y+ + + LV R
Sbjct: 214 MEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNR 273
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+ DA + + + G + Y+ +I CK ++A + E+E G
Sbjct: 274 VSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG---------- 323
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
++P+ TY ++ + R D A LL
Sbjct: 324 ---------------------------IRPNVVTYTALVNGLCNSS---RWSDAARLLSD 353
Query: 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
M++ K++ PNV TY+ L++ F K V EA F
Sbjct: 354 MIK--KKITPNVITYSALLDAFVKNGKVLEAKELF 386
>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
Length = 608
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 14/247 (5%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
F LV AY GD A LK G +P + AL +G K + M+
Sbjct: 145 FLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQ 204
Query: 167 KINYDIRQ-AWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAEDCKAG 222
+ + I+++ V ++A +F L + + +++ +MI KAG
Sbjct: 205 TSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAG 264
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
D++ A ++ +M G +T FN L+S + EV+ ++ M+ +KPD +
Sbjct: 265 DYAQARKLFAQMSERGIPLSTVTFNSLMSFETD--YKEVS-NIYDQMQ--RTALKPDVVS 319
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRH 342
Y+ +I+AY +A R ++ + M++ R P K+Y +L++ F V EA
Sbjct: 320 YSLLIKAYGKAR---REEEALAVFEEMLDAGVR--PTRKSYNILIDAFAISGLVEEAHTV 374
Query: 343 FRALQNY 349
F+A++ +
Sbjct: 375 FKAMRRH 381
>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Glycine max]
Length = 875
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 9/185 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ L+ L + LE+A K F+ LR YD I CK G S+A + +M
Sbjct: 527 TYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDM 586
Query: 235 EAAGRMATTFHFNHL-LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
E G T +N L L + I E+ E E G + PD TYN +I
Sbjct: 587 ERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKG---ISPDICTYNNIITCLCEG 643
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
+ +D LL M++ K + PNV ++ +L++ F+K A F N G
Sbjct: 644 ---GKAKDAISLLHEMLD--KGISPNVSSFKILIKAFSKSSDFKVACELFEVALNICGRK 698
Query: 354 KVLHN 358
+ L++
Sbjct: 699 EALYS 703
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 23/224 (10%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L+ L ++ + A ++F + + G + +++ C+AG ALE+ +
Sbjct: 155 LLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRAGLVKQALELVNNNNSC 214
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
R+A +N L+S + A E M E + PD T+N I A RA
Sbjct: 215 -RIANRVVYNTLVSRFCREEMNNEAERLVERMN--ELGVLPDVVTFNSRISALCRA---G 268
Query: 298 RVQDVAELLGMMVEDHKRL--QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
+V + + + M D + +PNV T+ L+++ F K+ + +A G +
Sbjct: 269 KVMEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDA----------RGLVET 318
Query: 356 LHNEGNFGDPLSLY---LRALCREGRIIELLEALEAM-AKDNQP 395
+ GNF D L Y L L R G ++E L+ M AK +P
Sbjct: 319 MKKVGNF-DSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEP 361
>gi|356526577|ref|XP_003531893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Glycine max]
Length = 878
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y ++A KA +AL I EM+ +N L+ A G E A F+ ME
Sbjct: 370 YSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEME 429
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+K D TYN +I+ Y R Y VQ + + + +R+ PN TY+ L++ +
Sbjct: 430 CCG--IKNDVVTYNALIEGYGRHNKYVEVQKLFDEM-----KARRIYPNDLTYSTLIKIY 482
Query: 331 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
TK EA+ +R L+ T V+ S + ALC+ G I L L+ M
Sbjct: 483 TKGRMYAEAMDVYRELKQEGMKTDVVF--------YSALIDALCKNGLIESSLRLLDVMT 534
Query: 391 -KDNQP 395
K ++P
Sbjct: 535 EKGSRP 540
>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
Length = 410
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 1/145 (0%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M AAG P +++ L+ + D A +L G+ P T L F +
Sbjct: 204 MKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENH 263
Query: 155 ATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
K EILA MEK ++ + +LV L ++DA K+F + G+ ++ IYD+
Sbjct: 264 MGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDM 323
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAG 238
MI + G AL++ EM G
Sbjct: 324 MIYGYGREGSSYKALKLIMEMRQKG 348
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 37/201 (18%)
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATD-EIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
V L + A + RG K G A D ++ CK GD + A + EM G
Sbjct: 9 VRRLCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLG 68
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ L+ T G E FA FE M G ++P+ TYNC+I + R ++R
Sbjct: 69 LAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGG--VEPNLYTYNCLIGEWCRTGEFER 126
Query: 299 VQ--------------------------------DVAELLGMMVEDHKRLQPNVKTYALL 326
+ D A+LL MM + R P++ T+ LL
Sbjct: 127 ARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTR--PSIITFNLL 184
Query: 327 VECFTKYCAVTEAIRHFRALQ 347
V+ + K ++ A+ F ++
Sbjct: 185 VDGYGKAGKMSNALPFFNQMK 205
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 10/269 (3%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ D V +M GL+P ++ L+ Y +G E + GV P
Sbjct: 49 CKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNL 108
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFL 197
T L + G + + M + +R ++ L+ L R+ L DA K+
Sbjct: 109 YTYNCLIGEWCRTGEFERARSLFDEMP-VRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLD 167
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
G R + ++L++ KAG SNAL +M+AAG + +N L++ C
Sbjct: 168 MMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIA--GFCR 225
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
++ A + E ++P TY +I ++ R + ++ L GM + L+
Sbjct: 226 ARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEI--LAGM---EKAGLE 280
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ TY +LV + +A + F+++
Sbjct: 281 VDAHTYGVLVRALCMEGNMKDARKLFQSM 309
>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 566
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 116/298 (38%), Gaps = 50/298 (16%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEA 236
ILV L R K + +V R + G+ + + Y +I+ CKAG +A+ + +M A
Sbjct: 274 ILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVA 333
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
G +N L++ G A A ++ M PD T++ +I Y R
Sbjct: 334 VGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRR--CLPDVVTFSSLIDGYCRCGQL 391
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN-------- 348
D D ++ M + H +QPN T+ +++ F K EA+ HF N
Sbjct: 392 D---DAMKIWTEMAQYH--IQPNAHTFCIIIHTFCKQNRSGEAL-HFLKKMNMRTDIAPQ 445
Query: 349 ---YEGGTKVLHNEGNFGDP------------------LSLYLRALCREGRIIELLEALE 387
Y VL G + ++ + C +GRI E +
Sbjct: 446 AFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFH 505
Query: 388 AMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERK 445
M + P +++ V+S+I L + G E+D+I R I+ GG + K
Sbjct: 506 KMVETG--CSPDSIV--------VNSFISCLLKSGMPG-EVDHIMR-IAAGGASSSWK 551
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 2/171 (1%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V MI P +F L+ Y G + AM ++P T + F
Sbjct: 362 VYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFC 421
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLI--LVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+ + + L L M QA++ +++ L + +++AN + + + G R
Sbjct: 422 KQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDK 481
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
Y ++I C G + A+ ++M G + N +SC G+P
Sbjct: 482 YTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSGMP 532
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE-IYDLMIAEDCKAGDHSNALEIAYE 233
A+ L++ + + ++DA +F +GG+ + D ++++I CK GD ALE+
Sbjct: 200 AYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVER 259
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFA--TFENMEYGEDYMKPDTETYNCVIQAYT 291
M+ G T N L++ C EV+ ++ + P+ TY VI Y
Sbjct: 260 MDEFGCSPDTVTHNILVN--GLCRAKEVSKGREVLRRLQR-DGVCMPNVVTYTSVISGYC 316
Query: 292 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+A R++D + MV PNV TY +L+ + K
Sbjct: 317 KA---GRMEDAMAVYNDMVA--VGTSPNVVTYNVLINGYGK 352
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 127/303 (41%), Gaps = 38/303 (12%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
S+ GL+ YT + A+ L+ ++ G+ P T++A+ + G G +
Sbjct: 578 SWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYC 637
Query: 166 EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD--------LMIAE 217
EK I+ + V N ++ K+ + L+ DE+ D +I+
Sbjct: 638 EKKG--------IMSDARVGNSLIDLYAKI--GSVQNSLKVFDEMLDRRNLVSWTSIISG 687
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
G ALE+ EM AG F +++ + G+ E A F++M Y E +
Sbjct: 688 FAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVY-EYNID 746
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
P+ + + C+I RA + + E L M V NV + +L+ C +KY V
Sbjct: 747 PEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEV--------NVTVWRILLGCCSKYGEVA 798
Query: 338 ---EAIRHFRALQNYEGG-----TKVLHNEGNFGDPLSLYLRALCREGRIIELLEA-LEA 388
AI+ L+ GG + VL G F D + R L + +I++L EA +EA
Sbjct: 799 MGERAIKMISDLERESGGDFAVLSNVLTELGRFSD--AEQARKLLDQRKIVKLQEAVMEA 856
Query: 389 MAK 391
+ K
Sbjct: 857 VKK 859
>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
Length = 1153
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 18/259 (6%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G+SP R++ L+V++ D + + L + GV+P + R+ G
Sbjct: 204 MVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAAR 263
Query: 155 ATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ +IL ME D+ ++++ L L DA VF + K + D +
Sbjct: 264 FDEAYQILGKMEDSGCKPDV-VTHTVVIQVLCDAGRLSDAKDVFWK-MKASDQKPDRVTY 321
Query: 213 LMIAEDCK-AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+ + + C +GD + +EI M A G + ++ G + A A F+ M+
Sbjct: 322 ITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMK- 380
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
E + P+ +YN +I + +A+ +DR EL M + PN T+ L + +
Sbjct: 381 -EKGISPEQYSYNSLISGFLKADMFDR---ALELFNHM--NACGPSPNGYTHVLFINYYG 434
Query: 332 KYCAVTEAIRHFRALQNYE 350
K + + +A+Q YE
Sbjct: 435 K------SGQSLKAIQRYE 447
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 13/270 (4%)
Query: 73 MEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS 132
++ L Q R +A V D +M G+SP S++ L+ + + A+ +
Sbjct: 360 VDALCQVGRLDEALAVFD---EMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNA 416
Query: 133 AGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLE 190
G P T + +G G + K ++ M+ I D+ A +L L R+ L
Sbjct: 417 CGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVL-SSLARSGRLG 475
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
A +VF G+ Y +MI KA A+ +M G + N L+
Sbjct: 476 MAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLI 535
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
G A+ F ++ E ++P TYN ++ R +V++V LL M
Sbjct: 536 DTLYKGGKGNEAWKLFHQLK--EMKIEPTNGTYNTLLSGLGRE---GKVKEVMHLLEEMT 590
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
H PN+ TY +++C +K V AI
Sbjct: 591 --HSIHPPNLITYNTVLDCLSKNGEVNCAI 618
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 7/212 (3%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALA 146
D+ Y++++ G SP P ++ L+ G A + L G +P ++ L+
Sbjct: 864 DLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGH 923
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
R+ G+ + E + + IN DI+ ++ +L++ L L D F + + GL
Sbjct: 924 RIAGNTENVCQIFEKMVE-QGINPDIK-SYTVLIDTLCTAGRLNDGLSYFRQLLELGLEP 981
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
IY+L+I K+ A+ + EM+ G + + +N L+ G A +
Sbjct: 982 DLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMY 1041
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
E + KP+ TYN +I+ Y+ + S D
Sbjct: 1042 EELLI--KGWKPNVFTYNALIRGYSVSGSTDN 1071
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 112/293 (38%), Gaps = 45/293 (15%)
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANK 194
+P T I L G G + +EI AM Y D ++ +V+ L + L++A
Sbjct: 315 KPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALA 374
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
VF + G+ Y+ +I+ KA ALE+ M A G + ++
Sbjct: 375 VFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYG 434
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVEDH 313
G A +E+M+ + PD N V+ + R+ + V EL M V
Sbjct: 435 KSGQSLKAIQRYEHMK--SKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGV--- 489
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFR------------ALQN-----YEGGT--- 353
P+ TY ++++C +K EA+ F AL + Y+GG
Sbjct: 490 ---SPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNE 546
Query: 354 --KVLH---------NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP 395
K+ H G + LS L REG++ E++ LE M P
Sbjct: 547 AWKLFHQLKEMKIEPTNGTYNTLLS----GLGREGKVKEVMHLLEEMTHSIHP 595
Score = 40.0 bits (92), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/202 (18%), Positives = 88/202 (43%), Gaps = 4/202 (1%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ L++ + DA ++ +M+ G P ++ L+ + + G+ E ++ +
Sbjct: 884 LLDGLLKAGKMVDA---ENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMV 940
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLE 190
G+ P ++ L + G GL + ++ + + +L++ L +++ +E
Sbjct: 941 EQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIE 1000
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+A +F K G+ Y+ +I KAG S A ++ E+ G F +N L+
Sbjct: 1001 EAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALI 1060
Query: 251 SCQATCGIPEVAFATFENMEYG 272
+ G + A+A ++ + G
Sbjct: 1061 RGYSVSGSTDNAYAAYDCVAVG 1082
Score = 39.7 bits (91), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 79/172 (45%), Gaps = 9/172 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ ++++ + ++ +E+ +V + G +T Y+ +I+ K+ A+++ Y +
Sbjct: 811 YNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLM 870
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAE 294
+ G T + LL G A F M EYG KP+ YN ++ + A
Sbjct: 871 SEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYG---CKPNCTIYNILLNGHRIA- 926
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
++V ++ MVE + + P++K+Y +L++ + + + +FR L
Sbjct: 927 --GNTENVCQIFEKMVE--QGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQL 974
>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
Length = 480
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 104/256 (40%), Gaps = 13/256 (5%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALAR 147
++ +M AG SP +S L+ + +G + L R L AG+ P L+ LI+
Sbjct: 16 IVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISC-- 73
Query: 148 LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G+ + L M + ++ I+++ + + +E A + G T
Sbjct: 74 -LCKAGMLAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPT 132
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y ++ CK G+ S A+++ EM A G +FN LLS A F
Sbjct: 133 PHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFR 192
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
+M KPD TYN +I + + D + V L M ED + P TY L+
Sbjct: 193 SM--NSRGCKPDVVTYNTMIAGLCKWKKLD--EAVFLLERMKQED---VSPTFVTYTTLI 245
Query: 328 ECFTKYCAVTEAIRHF 343
+ K+ + +A F
Sbjct: 246 DHLCKFARLQQAYEVF 261
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 124/331 (37%), Gaps = 27/331 (8%)
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG-VRPLHETLIALARLFGSKGLATKGL 159
+P +++ L+ Y GD + A+ +R G +P + L AT L
Sbjct: 8 APDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDAL 67
Query: 160 EILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+ M + D+ L+ R L A ++ Y ++
Sbjct: 68 AVFQEMLGAGLQADV-NVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDA 126
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
KAG + ALE+ M+ AG M T +N L+SC G + A E+M +
Sbjct: 127 LGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMN--RKGIM 184
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
PD TYN VI + Y++ GMM ++ P+V TY L+ K
Sbjct: 185 PDCRTYNIVIDVLSSCGRYEKAY---SFFGMM--KRRKHSPDVVTYNTLLNGLKKLRRTD 239
Query: 338 EAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
EA F +Q K + + FG + L + GR+ + LE + K VP
Sbjct: 240 EACDLFDEMQ----ANKCMPDLTTFGTLID----TLAKAGRMEDALEQSARLVKMGH-VP 290
Query: 398 PRAMILSRKYRTLVSSWIEPLQEEAELGYEI 428
S Y L+S + Q + GYE+
Sbjct: 291 N-----SYIYNALISGFCRSGQVDK--GYEL 314
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 130/331 (39%), Gaps = 23/331 (6%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALARLFGSKGLATKG 158
P SF LV+ A+ + L AG++ + TLI G A +
Sbjct: 45 PNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRL 104
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
L + A + D+ + L++ L + A +VF K G +Y+++I+
Sbjct: 105 LHHMTAHAFV-LDVF-TYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCL 162
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
K G ALE+ +M G M +N ++ ++CG E A++ F M+ + P
Sbjct: 163 GKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKH--SP 220
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
D TYN ++ + D D+ + + + P++ T+ L++ K
Sbjct: 221 DVVTYNTLLNGLKKLRRTDEACDLFDEM-----QANKCMPDLTTFGTLIDTLAK------ 269
Query: 339 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI---IELLEALEAMAKDNQP 395
A R AL+ K+ H ++ + + CR G++ EL + + +
Sbjct: 270 AGRMEDALEQSARLVKMGHVPNSY--IYNALISGFCRSGQVDKGYELFQDMIECSCFPDS 327
Query: 396 VPPRAMILSRKYRTLVSSWIEPLQEEAELGY 426
+ ++L R S +E LQE G+
Sbjct: 328 ITYTILVLGFSRRGHTSMAMELLQEMVREGH 358
>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 650
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 9/254 (3%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+MI GL+ ++ L+ + A+ R + G RP T + L ++G
Sbjct: 295 EMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLVLNLLVAEG 354
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ L+ + + K Y + + LV L + ++ +A+++F ++ + Y
Sbjct: 355 QLVR-LDGIVEISK-RYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMS 412
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
M+ C AG A+E+ ++ G + T +N + S FE M+ +
Sbjct: 413 MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMK--K 470
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
D PD TYN +I ++ R D ++ E L + +P++ +Y L+ C K
Sbjct: 471 DGPSPDIFTYNILISSFGRVGEVDEAINIFEEL-----ERSDCKPDIISYNSLINCLGKN 525
Query: 334 CAVTEAIRHFRALQ 347
V EA F+ +Q
Sbjct: 526 GDVDEAHVRFKEMQ 539
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++I+ + G+ A+ I E+E + +N L++C G + A F+ M+
Sbjct: 480 YNILISSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ 539
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E + PD TY+ +++ + + E RV+ L M+ K QPN+ TY +L++C
Sbjct: 540 --EKGLNPDVVTYSTLMECFGKTE---RVEMAYSLFEEMLV--KGCQPNIVTYNILLDCL 592
Query: 331 TKYCAVTEAI 340
K EA+
Sbjct: 593 EKSGRTAEAV 602
>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 138/320 (43%), Gaps = 40/320 (12%)
Query: 22 GVVPIR---SAMSSPEKKTRRKKQQ----RRQQKHG--DSLLSTNGSVVSAAEQGLRLIF 72
G VP + +A+ K+RR K+ R + +G S+++ N + + A GL
Sbjct: 134 GFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGL---- 189
Query: 73 MEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS 132
++E M+ +N+ M+ G++ ++ L+ + G E AM +
Sbjct: 190 LKEAME-LKNQ-----------MVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRA 237
Query: 133 AGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY-----DIRQAWLILVEELVRNK 187
AG +P T AL ++ G++G K E++ E+I DI W L+ +N
Sbjct: 238 AGCKPNICTFNALIKMHGNRG---KFAEMMKVFEEIKNSCCVPDI-VTWNTLLAVFGQNG 293
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+ + VF + G + Y+ +I+ + G A++I M AG +N
Sbjct: 294 MDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYN 353
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA-ELL 306
+L+ A G+ E + F M+ G KP+ TY ++ AY + R+ +A E+
Sbjct: 354 AVLAALARGGLWEQSEKIFAEMKDGR--CKPNELTYCSLLHAYANGKEIGRMLALAEEIC 411
Query: 307 GMMVEDHKRLQPNVKTYALL 326
++E H L +KT L+
Sbjct: 412 SGVIEPHAVL---LKTLVLV 428
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 110/277 (39%), Gaps = 51/277 (18%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
++ + M AG+ P +++ L+ HE A K S G P T AL
Sbjct: 87 KIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALL 146
Query: 147 RLFGSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
++G + +E+L ME + Y+ L+ R+ L++A ++ +
Sbjct: 147 DVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNS------LISAYARDGLLKEAMELKNQM 200
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA----- 254
+GG+ Y +++ +AG +A+ + EM AAG FN L+
Sbjct: 201 VEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKF 260
Query: 255 ------------TCGIPEVAFATFENMEYGEDYMK----------------PDTETYNCV 286
+C +P++ +G++ M P+ +TYN +
Sbjct: 261 AEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTL 320
Query: 287 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
I AY+R S+D+ D+ + M+E + P++ TY
Sbjct: 321 ISAYSRCGSFDQAMDIYK---RMLE--AGITPDLSTY 352
>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g51965, mitochondrial; Flags: Precursor
gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
thaliana]
gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
Length = 650
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 106/254 (41%), Gaps = 9/254 (3%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+MI GL+ ++ L+ + A+ R + G RP T L L ++G
Sbjct: 295 EMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEG 354
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ L+ + + K Y + + LV L + ++ +A+++F ++ + Y
Sbjct: 355 QLVR-LDGVVEISK-RYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMS 412
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
M+ C AG A+E+ ++ G + T +N + S FE M+ +
Sbjct: 413 MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMK--K 470
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
D PD TYN +I ++ R D ++ E L + +P++ +Y L+ C K
Sbjct: 471 DGPSPDIFTYNILIASFGRVGEVDEAINIFEEL-----ERSDCKPDIISYNSLINCLGKN 525
Query: 334 CAVTEAIRHFRALQ 347
V EA F+ +Q
Sbjct: 526 GDVDEAHVRFKEMQ 539
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++IA + G+ A+ I E+E + +N L++C G + A F+ M+
Sbjct: 480 YNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ 539
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E + PD TY+ +++ + + E RV+ L M+ K QPN+ TY +L++C
Sbjct: 540 --EKGLNPDVVTYSTLMECFGKTE---RVEMAYSLFEEMLV--KGCQPNIVTYNILLDCL 592
Query: 331 TKYCAVTEAI 340
K EA+
Sbjct: 593 EKNGRTAEAV 602
>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
Length = 521
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 98/250 (39%), Gaps = 8/250 (3%)
Query: 86 PRVNDVIY-DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA 144
P +++Y M A P +F L+ A+ G + A + +P H A
Sbjct: 225 PSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNA 284
Query: 145 LARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
L + G LEI M++ + + IL+ R EDA K+F G
Sbjct: 285 LMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAG 344
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
+ L+++ +AG A E+ ME G T +N L++ G E
Sbjct: 345 FSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDME 404
Query: 264 ATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
A M + KPD TYN +IQ Y +A R +++ + L + +L P+ T
Sbjct: 405 ALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARL-----KLVPDATT 459
Query: 323 YALLVECFTK 332
+ L+ + K
Sbjct: 460 WTALMGGYAK 469
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 11/175 (6%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L++ ++ +EDA K F R + +E + ++I AG A E+ +M+
Sbjct: 109 LLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEELFVQMQKR 168
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G N L A A F ++E E +P+ +TYN +I Y +A
Sbjct: 169 GYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYE--CEPNIDTYNRMIVIYGKAGEPS 226
Query: 298 RVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
+ + M+ +R PN+ T+ L+ F + EA R+F LQ ++
Sbjct: 227 KAE-------MLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFD 274
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 118/319 (36%), Gaps = 55/319 (17%)
Query: 76 LMQHARNRDAPRVNDVIYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG 134
L+ + R R V ++ M AAG+ +++ L+ AY + + +GA+ ++ G
Sbjct: 129 LIHYYGKRGDKRGARVTFEKMRAAGIDSSVHAYNNLIRAYIMAQNLQGAVSCVEEMEIEG 188
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANK 194
+ P T A+ +GS G +E A K
Sbjct: 189 IFPNAATFSAIISGYGSSG----------------------------------NVEAAEK 214
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
F R IY +I CKAG+ A + +ME G AT +N L+ A
Sbjct: 215 WFQRSVSENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYA 274
Query: 255 TCGIPEVAFATFENMEYGEDY-MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
C I F ++ D + P TY C+I YT+ ++ E M
Sbjct: 275 RCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLYTK---LGKMMKALEFCKEMKAQG 331
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYL 370
L N TY++LV+ + + A F + E G + V +N + L
Sbjct: 332 ITLNRN--TYSMLVDGYVQLGDFANAFSVFEDMS--EAGIEPDWVTYN---------ILL 378
Query: 371 RALCREGRIIELLEALEAM 389
+A C+ ++ ++ L M
Sbjct: 379 KAFCKSRQMTRAIQLLGRM 397
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 102/258 (39%), Gaps = 10/258 (3%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L ++R R ++ M G SP +++ ++ + GD A ++ AG
Sbjct: 378 LKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGC 437
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDAN 193
RP T + G + ++ ME + + R ++ L++ + A
Sbjct: 438 RPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFR-SYTTLMQGFASIGEIGLAF 496
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
K R + + Y ++ CKAG NA+ + EM AG + FN LL
Sbjct: 497 KCLKRVNEITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNTLLDGW 556
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
A G A+ + M ++ PD +Y + A +A + + E +
Sbjct: 557 AQRGDMWEAYGIMQKMR--QEGFTPDIHSYTSFVNACCKAGDMQKATETIEEM-----KQ 609
Query: 314 KRLQPNVKTYALLVECFT 331
+ LQPN++TY +L+ +T
Sbjct: 610 QDLQPNLQTYTILIHGWT 627
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 66/332 (19%), Positives = 127/332 (38%), Gaps = 22/332 (6%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M A G++ ++ LV Y GD A + AG+ P T L + F
Sbjct: 326 EMKAQGITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSR 385
Query: 154 LATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
T+ +++L M+ Q ++ +++ ++ + A K G R Y+
Sbjct: 386 QMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYN 445
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+++ + G A + EME AG + L+ A+ G +AF + +
Sbjct: 446 VIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVN-- 503
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
E KP +Y +++A +A V E + + N + L++ + +
Sbjct: 504 EITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAF-----AGVPMNNYIFNTLLDGWAQ 558
Query: 333 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392
+ EA + ++ EG T +H+ +F + A C+ G + + E +E M +
Sbjct: 559 RGDMWEAYGIMQKMRQ-EGFTPDIHSYTSF-------VNACCKAGDMQKATETIEEMKQ- 609
Query: 393 NQPVPPRAMILSRKYRTLVSSWIEPLQEEAEL 424
Q + P + Y L+ W E L
Sbjct: 610 -QDLQPNL----QTYTILIHGWTSVSHPEKAL 636
>gi|255551665|ref|XP_002516878.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543966|gb|EEF45492.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 714
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 40/206 (19%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M G+ P S+ L+ AY+++G HE A + + + G++P ET AL F G
Sbjct: 465 MKKVGIKPTSHSYTALIHAYSVSGWHEKAYSTFENMQTEGIKPSIETYTALLDAFRRSGD 524
Query: 155 ATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ I M EK+ R + IL++ + + +A V K GL T Y+
Sbjct: 525 TQTLMRIWKMMMSEKVE-GTRVTFNILLDGFAKQGHYVEARDVISEFGKLGLHPTVMTYN 583
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+++ + G HS ++ EM AT
Sbjct: 584 MLMNAYARGGQHSKLPQLLKEM-----------------------------ATLN----- 609
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDR 298
+KPD+ TY +I AY R + R
Sbjct: 610 ---LKPDSITYLTMIYAYIRVRDFRR 632
Score = 48.1 bits (113), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 102/259 (39%), Gaps = 16/259 (6%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V + +M A GL P +F+ L+ AY+ E L AG++P ++ L
Sbjct: 387 VEGIFAEMKAKGLKPTSATFNILMDAYSRRMQPEIVEELLLEMQDAGLQPDAKSYTCLIS 446
Query: 148 LFGSKGLATK-GLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
+G + T M+K+ ++ L+ + + E A F G++
Sbjct: 447 AYGRQNKMTDMAANAFLRMKKVGIKPTSHSYTALIHAYSVSGWHEKAYSTFENMQTEGIK 506
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+ E Y ++ ++GD + I M + T FN LL A G A
Sbjct: 507 PSIETYTALLDAFRRSGDTQTLMRIWKMMMSEKVEGTRVTFNILLDGFAKQGHYVEARDV 566
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
E+G+ + P TYN ++ AY R + ++ + + + + L+P+ TY
Sbjct: 567 IS--EFGKLGLHPTVMTYNMLMNAYARGGQHSKLPQLLKEMATL-----NLKPDSITYLT 619
Query: 326 LVECFTKYCAVTEAIRHFR 344
++ + + +R FR
Sbjct: 620 MIYAYIR-------VRDFR 631
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 10/163 (6%)
Query: 178 ILVEELVRN-KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
I++ + +N + ++A + F + + G++ + EI ++ C G + AL I EM
Sbjct: 302 IMITMMRKNGRSAKEAWEFFEKMNRKGVKWSPEILGALVKSFCDEGLKNEALIIQVEMAK 361
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
G + +N L+ E F M+ +KP + T+N ++ AY+R
Sbjct: 362 KGAFSNAIVYNTLMDAYNKSNQIEEVEGIFAEMK--AKGLKPTSATFNILMDAYSR---- 415
Query: 297 DRVQ-DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
R+Q ++ E L + ++D LQP+ K+Y L+ + + +T+
Sbjct: 416 -RMQPEIVEELLLEMQD-AGLQPDAKSYTCLISAYGRQNKMTD 456
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 131/322 (40%), Gaps = 64/322 (19%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDA 192
GV+ E L AL + F +GL + L I M K + + L++ ++ +E+
Sbjct: 328 GVKWSPEILGALVKSFCDEGLKNEALIIQVEMAKKGAFSNAIVYNTLMDAYNKSNQIEEV 387
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG-------------- 238
+F GL+ T +++++ + E+ EM+ AG
Sbjct: 388 EGIFAEMKAKGLKPTSATFNILMDAYSRRMQPEIVEELLLEMQDAGLQPDAKSYTCLISA 447
Query: 239 ----------------RMA------TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
RM T+ + L+ + G E A++TFENM+ + +
Sbjct: 448 YGRQNKMTDMAANAFLRMKKVGIKPTSHSYTALIHAYSVSGWHEKAYSTFENMQ--TEGI 505
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK---Y 333
KP ETY ++ A+ R+ Q + + MM+ + +++ T+ +L++ F K Y
Sbjct: 506 KPSIETYTALLDAFRRSGD---TQTLMRIWKMMMSE--KVEGTRVTFNILLDGFAKQGHY 560
Query: 334 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393
+ I F L + T + +N + + A R G+ +L + L+ MA N
Sbjct: 561 VEARDVISEFGKLGLHP--TVMTYN---------MLMNAYARGGQHSKLPQLLKEMATLN 609
Query: 394 QPVPPRAMILSRKYRTLVSSWI 415
+ P ++ Y T++ ++I
Sbjct: 610 --LKPDSIT----YLTMIYAYI 625
>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
[Vitis vinifera]
gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
Length = 878
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 9/159 (5%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ I++ L + L++A K F+ L IYD I CK G S+A + +M
Sbjct: 530 TYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDM 589
Query: 235 EAAGRMATTFHFNHL-LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
E G + +N L L + I E+ + ++M+ E + P+ TYN +I
Sbjct: 590 EKRGCNKSLQTYNSLILGLGSKNQIFEI-YGLLDDMK--EKGITPNICTYNNMISCLCEG 646
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
R++D LL M++ K + PN+ ++ LL++ F K
Sbjct: 647 ---GRIKDATSLLDEMLQ--KGISPNISSFRLLIKAFCK 680
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 19/217 (8%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L+ L + EDA +VF + G R + + +++ C+AG ALE+ M +
Sbjct: 156 LLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSF 215
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G +N L+S G E A E M ED + PD T+N I A A
Sbjct: 216 GVQPNKVIYNTLISSFCREGRNEEAERLVERMR--EDGLFPDVVTFNSRISALCSA---G 270
Query: 298 RVQDVAELL-GMMVEDHKRL-QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
++ + + + M +++ L +PN+ T+ L++E F K + EA +++
Sbjct: 271 KILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMK-------- 322
Query: 356 LHNEGNFG--DPLSLYLRALCREGRIIELLEALEAMA 390
GN + +++L L R G+++E AL+ M
Sbjct: 323 --RNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMV 357
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 82/366 (22%), Positives = 141/366 (38%), Gaps = 35/366 (9%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM+ AG+SP + + L+ +G E A + G RP + L R + G
Sbjct: 141 DMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAG 200
Query: 154 LATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
L+ + LE+L M + + L+ R E+A ++ R + GL ++
Sbjct: 201 LSMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFN 260
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMA----TTFHFNHLLSCQATCGIPEVAFATFEN 268
I+ C AG A I +M+ + FN +L G+ E A E+
Sbjct: 261 SRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVES 320
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
M+ + M + E+YN + R ++ + L MV+ K ++PN+ ++ +++
Sbjct: 321 MKRNGNLM--ELESYNIWLLGLVRN---GKLLEAQLALKEMVD--KGIEPNIYSFNTVMD 373
Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEAL-E 387
K +++A R + G + G S L C G++++ L E
Sbjct: 374 GLCKNGLISDA----RMIM----GLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHE 425
Query: 388 AMAKDNQPVPPRAMILSRKYRTLVSSWIEP--------LQEEAELGYEIDYIARYISEGG 439
M + P IL L S W E LQ+ E Y++D + I G
Sbjct: 426 MMRRGCSPNTYTCNIL------LHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDG 479
Query: 440 LTGERK 445
L K
Sbjct: 480 LCKSGK 485
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1080
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 119/277 (42%), Gaps = 17/277 (6%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L++ +R+A V V M+ G+ P R++ L+VA+ D E + L+ + GV
Sbjct: 170 LVKSGFDREALEVYRV---MMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGV 226
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDAN 193
+P + R+ G + ILA ME D+ +L++ L + DA
Sbjct: 227 KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDV-ITHTVLIQVLCDAGRISDAK 285
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
VF + K + Y ++ + GD + +EI M+A G + ++
Sbjct: 286 DVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVI--D 343
Query: 254 ATCGIPEV--AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
A C + V A F+ M+ + + P+ +YN +I + +A DR D EL M
Sbjct: 344 ALCQVGRVFEALEMFDEMK--QKGIVPEQYSYNSLISGFLKA---DRFGDALELFKHM-- 396
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
D +PN T+ L + + K +AI+ + +++
Sbjct: 397 DIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKS 433
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 73 MEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEG-AMHSLKREL 131
++ L Q R +A + D +M G+ P S++ L+ + L D G A+ K
Sbjct: 342 IDALCQVGRVFEALEMFD---EMKQKGIVPEQYSYNSLISGF-LKADRFGDALELFKHMD 397
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYL 189
G +P T + +G G + K ++ M+ I D+ +L L ++ L
Sbjct: 398 IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFG-LAKSGRL 456
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
A +VF G+ Y +MI KA A++I Y+M + N L
Sbjct: 457 GMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSL 516
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G + A+ F ++ E ++P TYN ++ R +V++V LL M
Sbjct: 517 IDTLYKAGRGDEAWRIFYQLK--EMNLEPTDGTYNTLLAGLGRE---GKVKEVMHLLEEM 571
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
H PN+ TY +++C K AV +A+
Sbjct: 572 Y--HSNYPPNLITYNTILDCLCKNGAVNDAL 600
Score = 46.6 bits (109), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 11/223 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-- 137
++R + D+ Y++++ G SP P ++ L+ G E A + L G +
Sbjct: 836 VKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANC 895
Query: 138 -LHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANK 194
++ L+ R+ G+ K + M + IN DI+ ++ I+++ L + L D
Sbjct: 896 TIYNILLNGHRIAGN---TEKVCHLFQDMVDQGINPDIK-SYTIIIDTLCKAGQLNDGLT 951
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
F + + GL Y+L+I K+ A+ + EM+ G + + +N L+
Sbjct: 952 YFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLG 1011
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G A +E E KP+ TYN +I+ Y+ + S D
Sbjct: 1012 KAGKAAEAGKMYE--ELLTKGWKPNVFTYNALIRGYSVSGSTD 1052
Score = 43.1 bits (100), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 9/170 (5%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
++ LV+++ LE A ++ G T Y ++ KAG +A + EM G
Sbjct: 831 IISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 890
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA-ESYD 297
A +N LL+ G E F++M + + PD ++Y +I +A + D
Sbjct: 891 CKANCTIYNILLNGHRIAGNTEKVCHLFQDMV--DQGINPDIKSYTIIIDTLCKAGQLND 948
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ +LL M L+P++ TY LL++ K + EA+ F +Q
Sbjct: 949 GLTYFRQLLEM------GLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ 992
Score = 42.7 bits (99), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 90/213 (42%), Gaps = 6/213 (2%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ L++ R DA ++ +M+ G ++ L+ + + G+ E H + +
Sbjct: 866 LLDGLLKAGRIEDA---ENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMV 922
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLE 190
G+ P ++ + G GL + ++ + + +L++ L ++K LE
Sbjct: 923 DQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLE 982
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+A +F K G+ Y+ +I KAG + A ++ E+ G F +N L+
Sbjct: 983 EAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALI 1042
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETY 283
+ G + A+A + M G P++ TY
Sbjct: 1043 RGYSVSGSTDSAYAAYGRMIVGG--CLPNSSTY 1073
Score = 39.3 bits (90), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 9/172 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ +L++ + ++ +E+ KV + G +T Y+ +I+ K+ A+++ Y +
Sbjct: 793 YNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLM 852
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAE 294
+ G T + LL G E A F M EYG K + YN ++ + A
Sbjct: 853 SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG---CKANCTIYNILLNGHRIAG 909
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ ++V L MV+ + + P++K+Y ++++ K + + + +FR L
Sbjct: 910 NTEKV---CHLFQDMVD--QGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQL 956
>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
Length = 425
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 109/282 (38%), Gaps = 48/282 (17%)
Query: 53 LLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVV 112
L ++ S+ A+ I + L + R+ +A + D +M G +P ++ ++
Sbjct: 106 LFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFD---EMEERGCTPSAPAYTNVID 162
Query: 113 AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI 172
Y G E AM LK+ L + P TL +L
Sbjct: 163 IYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSL--------------------------- 195
Query: 173 RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC--KAGDHSNALEI 230
+ + R E A ++F R K G+ ++ M+ DC KAG A +
Sbjct: 196 -------ITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAML--DCCGKAGKVGLAYQF 246
Query: 231 AYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 290
EMEA G + FN L++C A+ + M + PD TY C+I+A+
Sbjct: 247 MDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAG--LTPDVFTYTCMIEAF 304
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+A + + E+ G M + NV TY LL++ K
Sbjct: 305 AKAGNMGK---AFEMFGDM--EKAGCSANVVTYNLLIDALVK 341
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 130/342 (38%), Gaps = 63/342 (18%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ R+ +V D ++ G P ++ ++ + G+ AM L + + G+ P
Sbjct: 24 YGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIKTGLEP- 82
Query: 139 HETLIALARL--FGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKV 195
+TL+ L G + + ++ A+M+ + + IL+ L R K E+A +
Sbjct: 83 -DTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLL 141
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL--------------------------- 228
F + G + Y +I CKAG +A+
Sbjct: 142 FDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSR 201
Query: 229 --------EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
EI M+ +G T FN +L C G +A+ + ME +KP++
Sbjct: 202 TGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEME--ARGIKPNS 259
Query: 281 ETYNCVIQAYTRA----ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
T+N +I RA E+Y +Q++ L P+V TY ++E F K +
Sbjct: 260 ITFNTLINCLGRAKYASEAYKVLQEMRS---------AGLTPDVFTYTCMIEAFAKAGNM 310
Query: 337 TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
+A F ++ V+ +L + AL + GR
Sbjct: 311 GKAFEMFGDMEKAGCSANVV--------TYNLLIDALVKAGR 344
>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
Length = 730
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 21/185 (11%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y +I KAG AL + EM+ A +N LLS A G E A + ME
Sbjct: 250 YSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEME 309
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+K D TYN ++ Y + Y+ V+ V E + +R+ PN+ TY+ L++ +
Sbjct: 310 --SSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEM-----KAERIFPNLLTYSTLIDVY 362
Query: 331 TKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
+K EA+ FR + + G K VL+ S + ALC+ G + + L+
Sbjct: 363 SKGGLYQEAMEVFREFK--KAGLKADVVLY---------SALIDALCKNGLVESAVSFLD 411
Query: 388 AMAKD 392
M K+
Sbjct: 412 EMTKE 416
>gi|219885451|gb|ACL53100.1| unknown [Zea mays]
Length = 437
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 83/199 (41%), Gaps = 8/199 (4%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
++P SF V G + A +L ++ G RP T A+ +G TK +
Sbjct: 52 VAPDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAM 111
Query: 160 EILAAMEKINYD--IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+L AM + + IR + LV L LE+A ++ + L T +IY I
Sbjct: 112 EVLDAMCGLGCEPTIRT-YNSLVGGLCYVGRLEEALELLKKLKDSPL--TPDIYTFTIVL 168
Query: 218 D--CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED- 274
D CK G A I ++ G TTF +N LL+ G P AFA M D
Sbjct: 169 DGFCKVGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDA 228
Query: 275 YMKPDTETYNCVIQAYTRA 293
PD ++ V+ A RA
Sbjct: 229 ACLPDKTSFGIVLTALLRA 247
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 96/266 (36%), Gaps = 57/266 (21%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ D I M G+ P +++ ++ Y L G E A K ++P T
Sbjct: 235 KAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYT----- 289
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+ + L + + +E+A+ V + + GL
Sbjct: 290 -----------------------------YNSFISRLCKERRIEEASGVLCKLLESGLVP 320
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y+ +I C GD A EM G +A+ F +N L+ A
Sbjct: 321 NAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIH----------ALFLE 370
Query: 267 ENMEYGEDYMK--------PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ +E ED +K PD TYN I Y R + L MVE K ++P
Sbjct: 371 KRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRC---GNAKKALSLFDEMVE--KNIRP 425
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFR 344
V+TY L++ F K ++EA F+
Sbjct: 426 TVETYTSLIDVFGKRNRMSEAEEKFK 451
Score = 46.6 bits (109), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 110/281 (39%), Gaps = 45/281 (16%)
Query: 71 IFMEELMQHAR--NRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
+F L+ HA + D+I +M G+ P +++ + Y G+ + A+
Sbjct: 357 VFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFD 416
Query: 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY 188
+ +RP ET +L +FG RN+
Sbjct: 417 EMVEKNIRPTVETYTSLIDVFGK---------------------------------RNR- 442
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+ +A + F + K G+ +++ +I C G+ A ++ EM+ A + FN
Sbjct: 443 MSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNT 502
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT-RAESYDRVQDVAELLG 307
L+ Q C +V A E E +KPD +YN +I Y+ R + D ++ E+L
Sbjct: 503 LM--QGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLS 560
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
+ P + TY L++ ++K A R +Q+
Sbjct: 561 L------GFDPTLLTYNALIQGYSKIGEADHAEELLREMQS 595
>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 770
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 20/250 (8%)
Query: 145 LARLFGSKGLATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFLRGAKG 202
L + F G + K +++ M++ N I ++ ++ L + K L +A ++F G
Sbjct: 135 LLKGFCQSGDSHKAMDLFCMMKR-NCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGG 193
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
+ + +I CK GD + EME G F ++ L+S + G E
Sbjct: 194 ECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERG 253
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F M + P+ TY+C++ A + + + ++ A++L M +++P+V
Sbjct: 254 KELFNEML--RKNVTPNVVTYSCLMNALCKKQKW---KEAAQMLDTMTG--CKVRPDVVA 306
Query: 323 YALLVECFTKYCAVTEAIRHFRAL-QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381
Y +L + +K ++AI+ + + E V +N + LC+EGR+ +
Sbjct: 307 YTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNA---------IINGLCKEGRVDD 357
Query: 382 LLEALEAMAK 391
L LE MAK
Sbjct: 358 ALGILETMAK 367
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 106/265 (40%), Gaps = 12/265 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+N D ++ +M GL + L+ + GD E L V P
Sbjct: 210 CKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNV 269
Query: 140 ETLIALARLFGSKGLATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFL 197
T L K + ++L M K+ D+ A+ +L + L +N DA KV
Sbjct: 270 VTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDV-VAYTVLADGLSKNGRASDAIKVLD 328
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
K G + Y+ +I CK G +AL I M G+ ++ L+ + CG
Sbjct: 329 LMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLV--KGLCG 386
Query: 258 IPEV--AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
+ ++ A + E ++KPD +N VIQ + R++ + MVE +
Sbjct: 387 VGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQR---RLRHAKRVYYTMVE--RG 441
Query: 316 LQPNVKTYALLVECFTKYCAVTEAI 340
N+ TY +L++ + +T+A+
Sbjct: 442 FPSNIVTYNILIDGYLSAGKLTKAL 466
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 134/352 (38%), Gaps = 32/352 (9%)
Query: 84 DAPRVNDVIY---DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
D RV D + DM+ G P ++ L+ A N E AM L + G P
Sbjct: 155 DRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIV 214
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRG 199
T + +G E+L + + ++ L++ L +K +D ++F
Sbjct: 215 TYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEM 274
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
+ + +D++I C+ G A+++ +M G T N +++ G
Sbjct: 275 MEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRV 334
Query: 260 EVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ AF +M YG PDT +Y V++ RAE +D D ELL MV ++ P
Sbjct: 335 DDAFKLLNDMGSYG---CNPDTISYTTVLKGLCRAERWD---DAKELLNEMVRNN--CPP 386
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
N T+ + + + +AI + + V+ + C +G
Sbjct: 387 NEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNA--------LVNGFCVQGH 438
Query: 379 IIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI--EPLQEEAELGYEI 428
I LE +M P P + Y TL++ E L AEL E+
Sbjct: 439 IDSALELFRSM-----PCKPNTI----TYTTLLTGLCNAERLDGAAELVAEM 481
>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
Length = 410
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 119/269 (44%), Gaps = 17/269 (6%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
+A RV DV M G++P ++ L+ Y + G E + GV P T
Sbjct: 56 EARRVFDV---MPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEMRRGGVEPNLYTYN 112
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFLRGAK 201
L + G K +L + +R ++ IL+ L R+ L+DA ++F +
Sbjct: 113 CLVGEWCRTG-EFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRR 171
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G+ + ++L+I KAG SNAL +M+AAG + +N L+ C ++
Sbjct: 172 EGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIG--GFCRARDI 229
Query: 262 AFA--TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
A A F +M+ E + P TY +I A+ + DR E+L M + L+ +
Sbjct: 230 AHAIRAFSDMK--ERRLAPTKVTYTILIGAFAKENEMDR---AFEMLSEM--EKAGLEVD 282
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRALQN 348
V++Y +L+ + A + F+++ +
Sbjct: 283 VQSYGVLLHALCMEGKMMHARKLFQSMDS 311
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M AAGL P +++ L+ + D A+ + + P T L F +
Sbjct: 204 MKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENE 263
Query: 155 ATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ E+L+ MEK ++ Q++ +L+ L + A K+F G++ + +YD+
Sbjct: 264 MDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDM 323
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAG 238
MI + G AL + EM +G
Sbjct: 324 MIYGYGREGSSYKALRLIMEMRKSG 348
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 118/294 (40%), Gaps = 44/294 (14%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ M + G P R++ L+ + +G E AM R + AG+ P T L +
Sbjct: 235 DIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQ 294
Query: 150 GSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
S+G +L +ME + L+L++ L ++ +E+A + + G++
Sbjct: 295 CSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQ 354
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL------------------ 250
IY MI CK+G A + ++ G + ++ L+
Sbjct: 355 VIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLND 414
Query: 251 ----SCQATCGIPEVAFATFENMEYGEDY------------MKPDTETYNCVIQAYTRAE 294
QA +P E+ D +KPD TY I++Y +
Sbjct: 415 MIESGVQAN-AVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQD- 472
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
R++D ++ M+ DH ++PN+ TY L++ + V++A F +L+N
Sbjct: 473 --GRMEDAESMMIQMI-DHG-VRPNLTTYNTLIKGYANLGLVSQA---FSSLKN 519
Score = 44.3 bits (103), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 66/320 (20%), Positives = 135/320 (42%), Gaps = 31/320 (9%)
Query: 48 KHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSF 107
+H LL + + A + L+ ++ L +H R +A + ++ G+ +
Sbjct: 301 EHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEA---QQFLGSLVQKGIKVNQVIY 357
Query: 108 HGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLI-ALARLFGSKGLATKGLEILA 163
++ A +G +GA + +++ ++ G P ++ +LI L R K LE ++
Sbjct: 358 TSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCR-------ENKLLEAIS 410
Query: 164 AMEKINYDIRQA----WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC 219
+ + QA + IL+++ +R + + R A G++ Y + I C
Sbjct: 411 LLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYC 470
Query: 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 279
+ G +A + +M G +N L+ A G+ AF++ +NM ++ KP+
Sbjct: 471 QDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMI--DNGCKPN 528
Query: 280 TETYNCVIQAYTRAESY-DRVQDVAEL--------LGMMVEDHKRLQPNVKTYA--LLVE 328
E+Y ++ + SY D V D L L ++E+ +LQ + +Y +
Sbjct: 529 DESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVYDCFIR 588
Query: 329 CFTKYCAVTEAIRHFRALQN 348
C +K + EA +Q+
Sbjct: 589 CLSKVDRLEEAKSFLVGMQS 608
Score = 42.7 bits (99), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 114/300 (38%), Gaps = 22/300 (7%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG--DHEGAMHSLKRELSAGVRPLHET 141
D P + ++ AGL+P ++ V+ Y G H + L + P T
Sbjct: 89 DLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPF--T 146
Query: 142 LIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
AL + G+ + + + A M + D + I+V L +A +
Sbjct: 147 YAALLQGLCGAGMVREAMAVFAGMWPDGCAPD-SHVYSIMVHGLCGAGRAGEAVALLTDA 205
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
G +Y+ +I C GD A++I M++ G + + L+ G
Sbjct: 206 MGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKV 265
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
E A + M E + P+ TY +IQ S ++ LL M + L PN
Sbjct: 266 ERAMVLYSRMI--EAGLAPNVVTYTTLIQGQC---SEGHLEHAFRLLHSM--EACGLAPN 318
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 379
T +L++ K+ + EA + +L + G KV N+ + + ALC+ G+
Sbjct: 319 EWTCLVLIDALCKHGRIEEAQQFLGSL--VQKGIKV--NQVIYTS----MIDALCKSGKF 370
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 17/205 (8%)
Query: 191 DANKVFLRGAKGGLR--ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFN 247
D + FL +K L I+++++ CK GD +A E+ EM+ + ++
Sbjct: 181 DLTRKFLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYS 240
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
L++ G + A FE M +D + PD TYN +I + E DR + E +
Sbjct: 241 TLINGLCGSGRLKEAIELFEEM-VSKDQILPDALTYNALINGFCHGEKVDRALKIMEFM- 298
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
PNV Y+ L+ F K + EA F +++ G K G +
Sbjct: 299 ----KKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSL--GLK----PDTVG--YT 346
Query: 368 LYLRALCREGRIIELLEALEAMAKD 392
+ CR GR+ E +E L+ M ++
Sbjct: 347 TLINFFCRAGRVDEAMELLKDMREN 371
Score = 40.0 bits (92), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 10/244 (4%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLS-PGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
IF + H +N D +V+ +M + +S P ++ L+ +G + A+ +
Sbjct: 202 IFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEE 261
Query: 130 ELSAG-VRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRN 186
+S + P T AL F + L+I+ M+K N ++ + L+ +
Sbjct: 262 MVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFN-YSALMNGFCKE 320
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
LE+A +VF GL+ Y +I C+AG A+E+ +M A T F
Sbjct: 321 GRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTF 380
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
N +L G E A E + Y Y+ + +Y V+ + R +Q +L+
Sbjct: 381 NVILGGLCREGRFEEARGMLERLPYEGVYL--NKASYRIVLNSLCRE---GELQKATQLV 435
Query: 307 GMMV 310
G+M+
Sbjct: 436 GLML 439
>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 439
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 112/277 (40%), Gaps = 30/277 (10%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + IL+E + L A ++F G Y +M+ CKAG AL+I E
Sbjct: 160 KTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIMVDILCKAGRVDEALDIVKE 219
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+ T+F ++ L+ E A TF ME ++ +K D YN +I A+ +
Sbjct: 220 MDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGME--KNGVKADVAAYNALIGAFCKV 277
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
+ ++V +L M D+K +QPN +T +++ EA R FR +
Sbjct: 278 NKF---KNVYRVLNEM--DYKGMQPNSRTLNIILNNLIARGETDEAFRVFRRM------I 326
Query: 354 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSS 413
KV + D ++ ++ C + L+ + M K VP S
Sbjct: 327 KVCEPD---ADTYTMMIKMFCERNELEMALKVWKYM-KKKHFVPSMHTF---------SV 373
Query: 414 WIEPLQEEAELGYEI----DYIARYISEGGLTGERKR 446
I L EE ++ + D I + I G+T R R
Sbjct: 374 LINGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLR 410
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 90/237 (37%), Gaps = 9/237 (3%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
I+D P +++ L+ + + A + + G P T + +
Sbjct: 147 IFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIMVDILCK 206
Query: 152 KGLATKGLEILAAME-KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
G + L+I+ M+ I + +L+ +EDA FL K G++A
Sbjct: 207 AGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEKNGVKADVAA 266
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ +I CK N + EM+ G + N +L+ G + AF F M
Sbjct: 267 YNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDEAFRVFRRM- 325
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
+PD +TY +I+ + + V + + K P++ T+++L+
Sbjct: 326 --IKVCEPDADTYTMMIKMFCERNELEMALKVWKYM-----KKKHFVPSMHTFSVLI 375
>gi|302819015|ref|XP_002991179.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
gi|300141007|gb|EFJ07723.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
Length = 561
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 110/274 (40%), Gaps = 16/274 (5%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG---DHEGAMHSLKRELSAGV 135
+ R R + V ++ G SP +++ ++ +Y+ G D + + S V
Sbjct: 199 YGRRRSFDKAEAVFQRLLTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTV 258
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDAN 193
+P + +G +G + + + +M E++ I + L K +DA
Sbjct: 259 KPDARMYNLMIHTYGKQGKVEQAMSVYQSMKRERVALTI----VTFNSLLACQKTWKDAE 314
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
VF + L Y ++ KA A +M AAG T +N L++
Sbjct: 315 DVFRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAY 374
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
A C PE A A + M+ ++ P E+Y +I AY + + +L M D
Sbjct: 375 AKCKDPEGARAVLKQMK--QNGCTPTVESYTSLISAYVSVNLMAKAEQT--VLRMKEAD- 429
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
LQPN++T+ +L+ + + +R F ++
Sbjct: 430 --LQPNLQTFCILMTGYANGNKLDNMMRSFETMK 461
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 1/161 (0%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+A+ R A + DMIAAG+ P +++ L+ AY D EGA LK+ G P
Sbjct: 339 YAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPT 398
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFL 197
E+ +L + S L K + + M++ + Q + IL+ L++ + F
Sbjct: 399 VESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPNLQTFCILMTGYANGNKLDNMMRSFE 458
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
GL +Y +++ D +A+ +M G
Sbjct: 459 TMKLAGLEPNRHVYTVLVNAYGSNDDFDSAIIWYKQMLGTG 499
>gi|297597021|ref|NP_001043343.2| Os01g0559500 [Oryza sativa Japonica Group]
gi|255673364|dbj|BAF05257.2| Os01g0559500 [Oryza sativa Japonica Group]
Length = 690
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 95/209 (45%), Gaps = 7/209 (3%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G P + L+ AY+ N ++E A +K S+G+ P L L +++ GL K
Sbjct: 258 GHKPNLFHYSSLLNAYSENANYEKADLLMKDLRSSGLTPNKVILTTLLKVYSKGGLFEKA 317
Query: 159 LEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+L +E + + + IL++ LV+ + + +A +F + G+++ + +MI+
Sbjct: 318 RELLTELEASGFAQDEMPYCILIDGLVKERKIWEAMILFNDMKEKGVKSDGYAFSIMISA 377
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
+ G + ++A E EA N S +A C ++ + E +
Sbjct: 378 LHRGGYREESKQLAKEFEAKNATYDLVMLN--TSLRAYCSTNDMESVMIMLRKMDESNIS 435
Query: 278 PDTETYNCVIQAYTRAE----SYDRVQDV 302
PD T+N +I+ + A+ +Y +QD+
Sbjct: 436 PDAITFNTLIRYFCMAKVYHLAYKTIQDM 464
>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 917
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 110/291 (37%), Gaps = 48/291 (16%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET----LIALARLF 149
+++ G+ P +F+ ++ AY G E A ++ + G+ P T LI+L R
Sbjct: 488 NLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRK- 546
Query: 150 GS-------------KGLATKGLEILAAME------KIN--------------YDIRQAW 176
GS KG + ++ +N + A+
Sbjct: 547 GSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAF 606
Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
+ L + + DA VF + G + +Y+ +I CK G + AL++ EM
Sbjct: 607 AAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNK 666
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
G + F N ++ G ++A TF M+ + PD TYN +I Y +A
Sbjct: 667 RGLLPDIFTVNMIICGLCKQGRMKLAIETF--MDMCRMGLSPDIVTYNTLIDGYCKAFDV 724
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
D+ MM +P++ TY + + YC V + R L+
Sbjct: 725 GGADDL-----MMKMSDSGWEPDLTTYNIRIH---GYCTVRKINRAVMILE 767
>gi|212275248|ref|NP_001130560.1| uncharacterized protein LOC100191659 [Zea mays]
gi|194689480|gb|ACF78824.1| unknown [Zea mays]
Length = 558
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 83/199 (41%), Gaps = 8/199 (4%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
++P SF V G + A +L ++ G RP T A+ +G TK +
Sbjct: 173 VAPDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAM 232
Query: 160 EILAAMEKINYD--IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+L AM + + IR + LV L LE+A ++ + L T +IY I
Sbjct: 233 EVLDAMLGLGCEPTIRT-YNSLVGGLCYVGRLEEALELLKKLKDSPL--TPDIYTFTIVL 289
Query: 218 D--CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED- 274
D CK G A I ++ G TTF +N LL+ G P AFA M D
Sbjct: 290 DGFCKVGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDA 349
Query: 275 YMKPDTETYNCVIQAYTRA 293
PD ++ V+ A RA
Sbjct: 350 ACLPDKTSFGIVLTALLRA 368
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 10/258 (3%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
++ M+ +G+ P +++ ++ + G + A L+ + G P T +L +
Sbjct: 309 LHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368
Query: 152 KGLATKGLEILA-AMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
G + + + AMEK + LV+ L + + A ++ + G
Sbjct: 369 DGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWT 428
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM- 269
Y+L++ CK G S+A I + A G + F FN L+ + A + M
Sbjct: 429 YNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTML 488
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+G + PD TYN ++ +A D V D + M+E K PN+ TY +L+E
Sbjct: 489 SHG---ITPDVITYNTLLNGLCKARKLDNVVDTFK---AMLE--KGCTPNIITYNILIES 540
Query: 330 FTKYCAVTEAIRHFRALQ 347
F K V+EA+ F+ ++
Sbjct: 541 FCKDRKVSEAMELFKEMK 558
>gi|1931651|gb|AAB65486.1| membrane-associated salt-inducible protein isolog; 88078-84012
[Arabidopsis thaliana]
Length = 652
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 3/214 (1%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
A N + + I M G SP + L+ +Y+ GD++ A + S G+ P
Sbjct: 248 ASNGRSEEAENFIQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNK 307
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLR 198
+ L +++ GL + E+L+ +E Y + + +L++ L + LE+A +F
Sbjct: 308 VMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIFDD 367
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G+R+ +MI+ C++ A E++ + E N +L G
Sbjct: 368 MKGKGVRSDGYANSIMISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCRAGE 427
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
E + M+ E + PD T++ +I+ + +
Sbjct: 428 MESVMRMMKKMD--EQAVSPDYNTFHILIKYFIK 459
>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 857
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 110/259 (42%), Gaps = 10/259 (3%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+V++++ +M G P S++ L+ AY G + AM ++ +AG T L
Sbjct: 293 KVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLL 352
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
L+G G ++ M+ N D + IL++ Y ++ +F A+ +
Sbjct: 353 NLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVE 412
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+ Y+ +I K G + +A +I M G + ++ + ++ + E A
Sbjct: 413 PNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVM 472
Query: 266 FENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
F M E G + P ETYN +I A+ R Y + + + + L+ +V ++
Sbjct: 473 FNTMNEVGSN---PTVETYNSLIHAFARGGLYKEAEAILSRM-----NESGLKRDVHSFN 524
Query: 325 LLVECFTKYCAVTEAIRHF 343
++E F + EA++ +
Sbjct: 525 GVIEAFRQGGQYEEAVKSY 543
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 123/304 (40%), Gaps = 23/304 (7%)
Query: 45 RQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGP 104
+Q++ S+L+ N + + A GL D + + +M G+ P
Sbjct: 196 KQERVSPSILTYNTVINACARGGL---------------DWEGLLGLFAEMRHEGIQPDV 240
Query: 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAA 164
+++ L+ A G + A + +G+ P T L + FG K E+L
Sbjct: 241 ITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLRE 300
Query: 165 ME-KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD 223
ME N ++ +L+E +++A VF + G A Y +++ K G
Sbjct: 301 MECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGR 360
Query: 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY 283
+ + ++ EM+ + +N L+ G + F +M E+ ++P+ +TY
Sbjct: 361 YDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDM--AEENVEPNMQTY 418
Query: 284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+I A + Y+ + + LL M + K + P+ K Y ++E F + EA+ F
Sbjct: 419 EGLIFACGKGGLYEDAKKI--LLHM---NEKGVVPSSKAYTGVIEAFGQAALYEEALVMF 473
Query: 344 RALQ 347
+
Sbjct: 474 NTMN 477
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 87/224 (38%), Gaps = 6/224 (2%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V + +DM + P +++ GL+ A G +E A L GV P + +
Sbjct: 399 VVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIE 458
Query: 148 LFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
FG L + L + M ++ + + + L+ R ++A + R + GL+
Sbjct: 459 AFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKR 518
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
++ +I + G + A++ EME A +LS + G+ + F
Sbjct: 519 DVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQF 578
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
+ E + P Y ++ Y + DR+ D L+ M+
Sbjct: 579 Q--EIKASGILPSVMCYCMMLALYAKN---DRLNDAYNLIDAMI 617
>gi|357487731|ref|XP_003614153.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515488|gb|AES97111.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 691
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 40/211 (18%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D M G+ P S+ ++ AY+++G HE A + + G++P ET L F
Sbjct: 446 DAFLKMKKVGIKPTSHSYTAMIHAYSVSGWHEKAYAVFENMIREGIKPSIETYTTLLDAF 505
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G ++I M EK+ + + ILV+ + +A V K GL+ T
Sbjct: 506 RRVGDTETLMKIWKLMMSEKVK-GTQVTFNILVDGFAKQGLFMEARDVISEFGKIGLQPT 564
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+++I + G SN ++ EMEA
Sbjct: 565 VMTYNMLINAYARGGLDSNIPQLLKEMEALR----------------------------- 595
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
++PD+ TY+ VI A+ R + R
Sbjct: 596 --------LRPDSITYSTVIYAFVRVRDFKR 618
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 104/244 (42%), Gaps = 9/244 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
+ +M A G+ P +F+ L+ AY+ + L G++P + L +G
Sbjct: 376 LFVEMKAKGIKPTAVTFNILMYAYSRRMQPKIVESLLAEMKDFGLKPNANSYTCLISAYG 435
Query: 151 -SKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
K ++ + M+K+ ++ ++ + + E A VF + G++ +
Sbjct: 436 RQKKMSDMAADAFLKMKKVGIKPTSHSYTAMIHAYSVSGWHEKAYAVFENMIREGIKPSI 495
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
E Y ++ + GD ++I M + T FN L+ A G+ A
Sbjct: 496 ETYTTLLDAFRRVGDTETLMKIWKLMMSEKVKGTQVTFNILVDGFAKQGLFMEARDVIS- 554
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
E+G+ ++P TYN +I AY R D ++ +LL M + RL+P+ TY+ ++
Sbjct: 555 -EFGKIGLQPTVMTYNMLINAYARG-GLD--SNIPQLLKEM--EALRLRPDSITYSTVIY 608
Query: 329 CFTK 332
F +
Sbjct: 609 AFVR 612
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+DA + F + + G+R E + +I C G S AL I EME G + +N L
Sbjct: 301 KDAWQFFEKMNQKGVRWGKEAFGALIKSFCVEGLLSEALIIQSEMEKKGISSNAIVYNTL 360
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ-DVAELLGM 308
+ E A F M+ +KP T+N ++ AY+R R+Q + E L
Sbjct: 361 MDAYCKSNRVEEAEGLFVEMK--AKGIKPTAVTFNILMYAYSR-----RMQPKIVESLLA 413
Query: 309 MVEDHKRLQPNVKTYALLVECF 330
++D L+PN +Y L+ +
Sbjct: 414 EMKDFG-LKPNANSYTCLISAY 434
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 99/234 (42%), Gaps = 18/234 (7%)
Query: 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAA 164
R ++ + +G ++ A + + GV P H T + + G + L +
Sbjct: 249 RVYNAAISGLLYDGRYKDAWKVYESMETDGVLPDHVTCSIM--IIGMRKLGHSAKDAWQF 306
Query: 165 MEKINYDI----RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220
EK+N ++A+ L++ L +A + K G+ + +Y+ ++ CK
Sbjct: 307 FEKMNQKGVRWGKEAFGALIKSFCVEGLLSEALIIQSEMEKKGISSNAIVYNTLMDAYCK 366
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPD 279
+ A + EM+A G T FN L+ + P++ + M ++G +KP+
Sbjct: 367 SNRVEEAEGLFVEMKAKGIKPTAVTFNILMYAYSRRMQPKIVESLLAEMKDFG---LKPN 423
Query: 280 TETYNCVIQAYTRAESYDRVQDVA--ELLGMMVEDHKRLQPNVKTYALLVECFT 331
+Y C+I AY R + ++ D+A L M ++P +Y ++ ++
Sbjct: 424 ANSYTCLISAYGRQK---KMSDMAADAFLKM---KKVGIKPTSHSYTAMIHAYS 471
>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
Length = 431
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 109/282 (38%), Gaps = 48/282 (17%)
Query: 53 LLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVV 112
L ++ S+ A+ I + L + R+ +A + D +M G +P ++ ++
Sbjct: 106 LFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFD---EMEERGCTPSAPAYTNVID 162
Query: 113 AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI 172
Y G E AM LK+ L + P TL +L
Sbjct: 163 IYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSL--------------------------- 195
Query: 173 RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC--KAGDHSNALEI 230
+ + R E A ++F R K G+ ++ M+ DC KAG A +
Sbjct: 196 -------ITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAML--DCCGKAGKVGLAYQF 246
Query: 231 AYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 290
EMEA G + FN L++C A+ + M + PD TY C+I+A+
Sbjct: 247 MDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAG--LTPDVFTYTCMIEAF 304
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+A + + E+ G M + NV TY LL++ K
Sbjct: 305 AKAGNMGK---AFEMFGDM--EKAGCSANVVTYNLLIDALVK 341
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 130/342 (38%), Gaps = 63/342 (18%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ R+ +V D ++ G P ++ ++ + G+ AM L + + G+ P
Sbjct: 24 YGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEP- 82
Query: 139 HETLIALARL--FGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKV 195
+TL+ L G + + ++ A+M+ + + IL+ L R K E+A +
Sbjct: 83 -DTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLL 141
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL--------------------------- 228
F + G + Y +I CKAG +A+
Sbjct: 142 FDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSR 201
Query: 229 --------EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
EI M+ +G T FN +L C G +A+ + ME +KP++
Sbjct: 202 TGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEME--ARGIKPNS 259
Query: 281 ETYNCVIQAYTRA----ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
T+N +I RA E+Y +Q++ L P+V TY ++E F K +
Sbjct: 260 ITFNTLINCLGRAKYASEAYKVLQEMRS---------AGLTPDVFTYTCMIEAFAKAGNM 310
Query: 337 TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
+A F ++ V+ +L + AL + GR
Sbjct: 311 GKAFEMFGDMEKAGCSANVV--------TYNLLIDALVKAGR 344
>gi|242078445|ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
gi|241940341|gb|EES13486.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
Length = 602
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 14/247 (5%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
F LV AY GD A LK G +P + L +G K + M+
Sbjct: 143 FLMLVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQ 202
Query: 167 KINYDIRQ-AWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAEDCKAG 222
+ + I+++ LV ++A +F L + + +++ +MI KAG
Sbjct: 203 TSGPEPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAG 262
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
D++ A ++ +M +T FN L+S + EV+ + ++ M+ MKPD +
Sbjct: 263 DYAQARKLFAQMSERKIPLSTVTFNSLMSFE--TDYKEVS-SIYDQMQRAG--MKPDVVS 317
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRH 342
Y+ +I+AY +A R ++ + M++ R P K+Y +L++ F V EA
Sbjct: 318 YSLLIKAYGKAR---REEEALAVFEEMLDAGVR--PTRKSYNILLDAFAISGLVDEANTV 372
Query: 343 FRALQNY 349
F+A++ +
Sbjct: 373 FKAMRRH 379
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 86/219 (39%), Gaps = 9/219 (4%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
IYD M AG+ P S+ L+ AY E A+ + L AGVRP ++ L F
Sbjct: 302 IYDQMQRAGMKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFA 361
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
GL + + AM ++ D+ ++ +V V + A K F R GL+
Sbjct: 362 ISGLVDEANTVFKAMRRHRVEPDL-CSYTTMVLAYVNASDMNGAEKFFRRIKDDGLKPNV 420
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+Y ++ K + + + M G + ++ A F+
Sbjct: 421 VVYGTLMKGYSKLNNVEKVMRVYERMRIQGVEPNQTIYTTIMDAHGRNSDFGNAVIWFKE 480
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
ME Y PD + N ++ + A + + Q+ EL+G
Sbjct: 481 ME-ARGY-PPDQKAKNILL---SLANTPEEQQEANELVG 514
>gi|168023641|ref|XP_001764346.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684498|gb|EDQ70900.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 978
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 14/209 (6%)
Query: 170 YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229
+ Q + +L+ K ++ A +V GL+A Y +I+ KAG +
Sbjct: 292 FSTLQHYTMLLSVCCHAKDIDGALRVLALLESRGLKADCMFYTSLISACAKAGKVDLLFQ 351
Query: 230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
I +EME AG A F ++ A G AF + M +KPD +N +I A
Sbjct: 352 IFHEMEVAGIEANVHTFGAMIDGCARAGQLPKAFGAYGIMI--SKNVKPDRVIFNTLINA 409
Query: 290 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ-- 347
TRA + R DV L M + ++P+ TY L+ + V A+ ++ ++
Sbjct: 410 CTRAGAVQRAFDV---LTDMKAEATPIKPDHVTYGALISACARAGEVDRALEVYQNMRES 466
Query: 348 NYEGG----TKVLH---NEGNFGDPLSLY 369
N +G T V+H +GN L +Y
Sbjct: 467 NVKGSPACYTAVVHACSQKGNVDYALLVY 495
>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/248 (18%), Positives = 115/248 (46%), Gaps = 8/248 (3%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P R+F+ L+ A+ + + E A + + +AGV P + LA+LF G +
Sbjct: 129 PNDRTFNMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENV 188
Query: 162 LAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220
+ M+ + + + I++ + ++++ ++ R G+ T +++ ++ +
Sbjct: 189 ITEMQNVYLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSE 248
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
+ ++ ME G F +++ + G+ + A A M+ E ++PD
Sbjct: 249 SMKPHKVDKVFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMK--EYDLQPDV 306
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
Y+ +++ Y+R R ++ L +M++++ L+PNV TY ++ + + +A+
Sbjct: 307 MAYSILVKGYSRQ---GRPEEGEAFLNIMIDEN--LKPNVITYTTVISGYCSLAQMDDAM 361
Query: 341 RHFRALQN 348
R F+ +++
Sbjct: 362 RVFQEMRS 369
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 107/275 (38%), Gaps = 48/275 (17%)
Query: 118 GDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL 177
GDH +LK G RP ET L S G +G +L ME+ N
Sbjct: 4 GDHRQVRSTLKNLRRDGHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDN-------- 55
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+ DA +F ++ ++ C+AG A + EM+
Sbjct: 56 ----------VIPDA--IF--------------FNTLLNGYCEAGKMKEAEALVLEMKER 89
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G T +N L+ G PE A + M + KP+ T+N +I+A+ ++ +
Sbjct: 90 GCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNS-KPNDRTFNMLIKAWAHDKNPE 148
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+ ++V ++ + P+V +Y L + F K +A +QN +
Sbjct: 149 KARNVISMM-----RAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQN----VYLRP 199
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKD 392
NE +G ++ Y+ A G+I E L +E M D
Sbjct: 200 NERTYGIVINGYIAA----GQIDESLRLIERMKMD 230
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 109/259 (42%), Gaps = 10/259 (3%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+V++++ +M + G P S++ L+ AY G + AM ++ +AG T L
Sbjct: 295 KVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLL 354
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
L+G G +I M+ N D + IL++ Y ++ +F + +
Sbjct: 355 NLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVE 414
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
E Y+ +I K G + +A +I M G + ++ + ++ + E A
Sbjct: 415 PNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVV 474
Query: 266 FENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
F M E G + P ETYN I A+ R Y + + + + L+ +V ++
Sbjct: 475 FNTMNEVGSN---PTVETYNSFIHAFARGGLYKEAEAILSRM-----NESGLKRDVHSFN 526
Query: 325 LLVECFTKYCAVTEAIRHF 343
+++ F + EA++ +
Sbjct: 527 GVIKAFRQGGQYEEAVKSY 545
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 101/234 (43%), Gaps = 12/234 (5%)
Query: 100 LSPGPRSFHGLVVAYTLNG-DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
+SP +++ ++ A G D EG + G++P T L +GL +
Sbjct: 202 VSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEA 261
Query: 159 LEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+ M + I DI + LV+ + LE +++ GG Y++++
Sbjct: 262 EMVFRTMNESGIVPDI-NTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLE 320
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
+ G A+++ +M+AAG +A ++ LL+ G + F M+
Sbjct: 321 AYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNT-- 378
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY-ALLVEC 329
PD TYN +IQ + + ++V L MVE++ ++PN++TY L+ C
Sbjct: 379 DPDAGTYNILIQVFGEGGYF---KEVVTLFHDMVEEN--VEPNMETYEGLIFAC 427
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/224 (19%), Positives = 87/224 (38%), Gaps = 6/224 (2%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V + +DM+ + P ++ GL+ A G +E A L G+ P + +
Sbjct: 401 VVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIE 460
Query: 148 LFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
FG L + L + M ++ + + + + R ++A + R + GL+
Sbjct: 461 AFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKR 520
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
++ +I + G + A++ EME A +LS + G+ + + F
Sbjct: 521 DVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQF 580
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
+ E + P Y ++ Y + DR+ D L+ M+
Sbjct: 581 Q--EIKASGILPSVMCYCLMLALYAKN---DRLNDAYNLIDEMI 619
Score = 43.5 bits (101), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 99/265 (37%), Gaps = 61/265 (23%)
Query: 149 FGSKGLATKGLEILAAMEKINYDIRQAWL--------ILVEELVRNKYLEDANKVFLRGA 200
F +G + L + M+ RQ W I++ L R L+ +VF
Sbjct: 110 FAQRGDWQRSLRLFKYMQ------RQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEMP 163
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIA----------------------------- 231
G+ T +Y +I + G +LE+
Sbjct: 164 SNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDW 223
Query: 232 -------YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
EM G +N LL A G+ + A F M E + PD TY+
Sbjct: 224 EGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMN--ESGIVPDINTYS 281
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 344
++Q + + +R++ V+ELL M E L P++ +Y +L+E + + ++ EA+ FR
Sbjct: 282 YLVQTFGK---LNRLEKVSELLREM-ESGGNL-PDITSYNVLLEAYAELGSIKEAMDVFR 336
Query: 345 ALQNYEGGTKVLHNEGNFGDPLSLY 369
+Q + N + L+LY
Sbjct: 337 QMQ----AAGCVANAATYSVLLNLY 357
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 15/256 (5%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L R DA R+ + DMI ++P ++ L+ A+ NG A + + +
Sbjct: 235 LCNSGRWNDAARL---LRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSI 291
Query: 136 RP---LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDA 192
P + +LI L A + +++ + K + ++ L+ + K +ED
Sbjct: 292 DPDIVTYSSLINGLCLHDRIDEANQMFDLMVS--KGCFPDVVSYNTLINGFCKAKRVEDG 349
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
K+F + ++ GL Y+ +I + GD A E +M++ G + +N LL
Sbjct: 350 MKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGG 409
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G+ E A FE+M+ E M D TY VIQ + +V+D L +
Sbjct: 410 LCDNGLLEKALVIFEDMQKSE--MDLDIVTYTTVIQGMCKT---GKVEDAWGLFCSL--S 462
Query: 313 HKRLQPNVKTYALLVE 328
K L+P++ TY ++
Sbjct: 463 LKGLKPDIVTYTTMMS 478
Score = 40.4 bits (93), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 36/209 (17%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM- 269
++ +++ K + + + +ME G + FN +++C C +A + M
Sbjct: 88 FNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKML 147
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ G + PD T ++ + R +RV D L+ MVE R P++ Y +++
Sbjct: 148 KLGYE---PDRVTIGSLVNGFCRR---NRVSDAVSLVDKMVEIGYR--PDIVAYNAIIDS 199
Query: 330 FTKYCAVTEAIRHFRALQ---------NYEGGTKVLHNEGNFGDPLSL------------ 368
K V +A+ F+ + Y L N G + D L
Sbjct: 200 LCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPN 259
Query: 369 ------YLRALCREGRIIELLEALEAMAK 391
L A + G+++E E E M +
Sbjct: 260 VITYSALLDAFVKNGKVLEAKEIFEEMVR 288
>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 119/279 (42%), Gaps = 33/279 (11%)
Query: 123 AMHSLKRELSAGVRPLHETL-IALARLFGSKGLATKGLEILAAMEKINYD------IRQA 175
A+ +L R++ HE+L + L + F + +E+ ++ I + I
Sbjct: 101 AVDALLRQMMYETCKFHESLFLNLMKYFAKSSEFERVVEMFNKIQPIVREKPSLKAISTC 160
Query: 176 WLILVE----ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIA 231
+LVE +L+R +L D NK + L+ I+++ I CK+GD +A +
Sbjct: 161 LNLLVESKQVDLLRG-FLLDLNKDHM------LKPNTCIFNIFIKYHCKSGDLESAFAVV 213
Query: 232 YEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 290
EM+ + ++ L+ G + A FE M +D + PD TYN +I +
Sbjct: 214 KEMKKSSISYPNLITYSTLMDGLCESGRLKEAIELFEEM-VSKDQILPDALTYNVLINGF 272
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
+ DR + + E + PNV Y+ L+ F K + EA+ F ++ +
Sbjct: 273 SCWGKVDRAKKIMEFM-----KSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIF- 326
Query: 351 GGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
G K + G ++ + CR GRI E + LE M
Sbjct: 327 -GLK----QDTVG--YTILINYFCRFGRIDEAMALLEEM 358
>gi|357455845|ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487251|gb|AES68454.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 503
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 18/171 (10%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ L + Y++ A ++F R + A ++Y ++I CK G AL EM+ G
Sbjct: 172 LLDTLCKYGYVKHACELFNRNS-NRFVADVKMYTVLIYGWCKIGRFKTALSFLNEMKVKG 230
Query: 239 RMATTFHFNHLLS--CQATCGIPEVAF--------ATFENMEYGEDYMKPDTETYNCVIQ 288
+N +L+ C+ PE F F+ M E ++PD +++ V+
Sbjct: 231 VEPNVVTYNVILNGICRKASLHPEERFERTIRDAEKVFDEMR--ESGIEPDVTSFSIVLH 288
Query: 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
Y+RA + Q V + LG+M E K + PNV TY +++C + EA
Sbjct: 289 VYSRAH---KPQLVLDKLGLMKE--KGICPNVVTYTSVIKCLCSCGRIEEA 334
>gi|357463931|ref|XP_003602247.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491295|gb|AES72498.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 704
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 129/307 (42%), Gaps = 31/307 (10%)
Query: 82 NRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMH---SLKRELSAGVRPL 138
N R D+ M A+G +P P +H L++ + + D +G + LK +L GV
Sbjct: 219 NNRLDRAMDIKDQMNASGFAPDPLVYHYLMLGHARSSDGDGVLRVYEELKEKL-GGVVED 277
Query: 139 HETLIALARLFGSKGLATKGL----EILAAMEKINYDIRQAWLILVEELVRNKYLEDANK 194
L L + + KG+ + + E+ +K++ DI A+ +++ L +N ++A +
Sbjct: 278 GVVLGCLMKGYFLKGMEKEAMECYQEVFVEGKKMS-DI--AYNSVLDALAKNGKFDEAMR 334
Query: 195 VFLRGAK-----GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+F R K L +++M+ C G A+E+ M + T FN+L
Sbjct: 335 LFDRMIKEHNPPAKLAVNLGSFNVMVDGYCAEGKFKEAIEVFRSMGESRCKPDTLSFNNL 394
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G+ A + ME G+ + PD TY ++ + +R D A M
Sbjct: 395 IEQLCNNGMILEAEEVYGEME-GKG-VNPDEYTYGLLMDTCFKE---NRPDDAASYFKKM 449
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL--------QNYEGGTKVLHNEGN 361
VE L+PN+ Y LV+ K + +A F + +Y+ KVL G
Sbjct: 450 VE--SGLRPNLAVYNRLVDGLVKVGKIDDAKFFFDLMVKKLKMDVASYQFMMKVLSEAGR 507
Query: 362 FGDPLSL 368
D L +
Sbjct: 508 LDDVLQI 514
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/352 (21%), Positives = 132/352 (37%), Gaps = 44/352 (12%)
Query: 69 RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
R F++ L++ N + R+ + M+ AG +P ++H ++ + + A L
Sbjct: 128 RNCFLQTLLE---NGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLD 184
Query: 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY 188
+ G +P L R F G LEI I A+ ++ R
Sbjct: 185 KAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIF---RNIPSPDAIAYNAIIHGHCRKND 241
Query: 189 LEDANKVFLRGAKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+ A + FL+ A D Y+++I CKA A E+ +EM G T FN
Sbjct: 242 CDGALE-FLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFN 300
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ G E A + M E +P TYN +I + ++ DR +D+ +
Sbjct: 301 SIMDGLCKAGKFERAHSLLAVM--AERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFV 358
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL- 366
P+V TY++L + K + EA + + +G T L D L
Sbjct: 359 -----SSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSG-KGCTPNLVTYNTLIDGLC 412
Query: 367 ---------------------------SLYLRALCREGRIIELLEALEAMAK 391
++ + LC+EGR+ + L+ +E M K
Sbjct: 413 KASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLK 464
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 138/334 (41%), Gaps = 40/334 (11%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I ++ L + ++ ++A +V D MI AG+ P +++ L+ + + A+ LK
Sbjct: 613 IIIDGLFKASKPKEARQVLD---QMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNM 669
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA--WLILVEELVRNKY 188
+ AGV P + T L E++ M + + + +++ L +
Sbjct: 670 IKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGC 729
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
L+ A + G+ A Y++ I CK G A + EM+ R ++
Sbjct: 730 LKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTL-RDEVSYTTVI 788
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKP---------DTETYNCVIQAYTRAESYDRV 299
+ C+A E ++ + + T+N +I A+T+ + R+
Sbjct: 789 IGLCKA------------EQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTK---RL 833
Query: 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE 359
+ LLG+MV+ + P+V TY +++ C K V +A F + ++ +
Sbjct: 834 DEALTLLGLMVQ--RGCSPSVITYNMVITCLCKLDKVDKAWELFDEM----AVRGIVASS 887
Query: 360 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393
++ ++ + LC +GR E L+ LE MA +
Sbjct: 888 VSY----TVLIYGLCGQGRGKEALQVLEEMASSD 917
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+M AG T F +N ++ C G E A FE M++ + PDT TYN +I Y +
Sbjct: 123 DMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRG--LIPDTVTYNSMIDGYGK 180
Query: 293 AESYD-RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
D V E+ M E P+V TY L+ CF K+ + + + FR ++
Sbjct: 181 VGRLDDTVYFFEEMKSMSCE------PDVITYNTLINCFCKFGKLPKGLEFFREMK 230
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 191 DANKVFLRGAKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
D K F + G G + T Y++MI CK GD A + EM+ G + T +N +
Sbjct: 115 DGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSM 174
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G + FE M+ +PD TYN +I + + + ++ E M
Sbjct: 175 IDGYGKVGRLDDTVYFFEEMKSMS--CEPDVITYNTLINCFCK---FGKLPKGLEFFREM 229
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+ L+PNV +Y+ LV+ F K + +A++ +
Sbjct: 230 KQ--SGLKPNVVSYSTLVDAFCKEDMMQQALKFY 261
>gi|218188463|gb|EEC70890.1| hypothetical protein OsI_02428 [Oryza sativa Indica Group]
Length = 647
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 95/209 (45%), Gaps = 7/209 (3%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G P + L+ AY+ N ++E A +K S+G+ P L L +++ GL K
Sbjct: 255 GHKPNLFHYSSLLNAYSENANYEKADLLMKDLRSSGLTPNKVILTTLLKVYSKGGLFEKA 314
Query: 159 LEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+L +E + + + IL++ LV+ + + +A +F + G+++ + +MI+
Sbjct: 315 RELLTELEASGFAQDEMPYCILIDGLVKERKIWEAMILFNDMKEKGVKSDGYAFSIMISA 374
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
+ G + ++A E EA N S +A C ++ + E +
Sbjct: 375 LHRGGYREESKQLAKEFEAKNATYDLVMLN--TSLRAYCSTNDMESVMIMLRKMDESNIS 432
Query: 278 PDTETYNCVIQAYTRAE----SYDRVQDV 302
PD T+N +I+ + A+ +Y +QD+
Sbjct: 433 PDAITFNTLIRYFCMAKVYHLAYKTIQDM 461
>gi|50582688|gb|AAT78758.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|108709716|gb|ABF97511.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1025
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 107/249 (42%), Gaps = 10/249 (4%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM+ G+ P ++ L+ G E A+ L++ + GV P + L + F K
Sbjct: 691 DMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKS 750
Query: 154 LATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ L++ + M+ ++ + ++ +V L+R +L+ + ++ + GL+ Y
Sbjct: 751 KMSNALQLFSYMKWLHMSPSSKTYVAMVNGLIRKNWLQQSYEILHDMVESGLQPKHTHYI 810
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN-MEY 271
+I C+ GD A E+ +M+A G + + + ++ CG E A F + M
Sbjct: 811 ALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRA 870
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
G M P T+ ++ + D + +L+ + L+ +V TY +L+
Sbjct: 871 G---MVPTIATFTTLMHGLCKEFKIDDAFHLKQLM-----ESCGLKVDVVTYNVLITGLC 922
Query: 332 KYCAVTEAI 340
+ +A+
Sbjct: 923 NKKCICDAL 931
>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 825
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 16/252 (6%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ + D DV+ M ++PG ++F+ ++ + G AM L + AG+ P
Sbjct: 311 YCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPN 370
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDI---RQAWLILVEELVRNKYLEDANKV 195
T +L S G L +L ME+ Y + RQ + I ++ L LE+A+ +
Sbjct: 371 TVTFNSLISGQCSVGERKIALRLLDLMEE--YGVLPDRQTYAIFIDALCDEGQLEEAHSL 428
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F G++A + IY ++ C+ GD +A + +M + M +N L+
Sbjct: 429 FSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLI--DGL 486
Query: 256 CGIPEV--AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
C + + A + M+ + ++P T T+N +I+ + + D A++ M+
Sbjct: 487 CKVKRLDRAIDLLDKMK--KQGIEPTTCTFNILIKQMLWDKKH---ADAAKMYEQMIS-- 539
Query: 314 KRLQPNVKTYAL 325
+P+ +TY L
Sbjct: 540 SGCKPDKQTYTL 551
>gi|125591609|gb|EAZ31959.1| hypothetical protein OsJ_16132 [Oryza sativa Japonica Group]
Length = 756
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 106/247 (42%), Gaps = 11/247 (4%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH-ETLIALARLFGSKGLATKGLEILAA 164
+ + ++ A +G E A KR AG R L AL L ++GLA K E+L
Sbjct: 149 TLNAVLSALATHGLLEPAFFCFKRLRDAGFRVLETHAYNALLSLLLTRGLAFKAFEVLDE 208
Query: 165 MEKINYDIRQA-WLILVEELVRNKYLEDANKVF--LRGAKGGLRATDEIYDLMIAEDCKA 221
M + + + ++V L R ++ A K+F +R +G RA+ +Y +++ KA
Sbjct: 209 MSSSGCALDEGTYELVVPALARAGRIDAARKMFDEMRKREGIGRASAGMYGVLVDVLAKA 268
Query: 222 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 281
G A+ + EM A G A+ ++ G + +E M G ++P
Sbjct: 269 GRLDAAMGMYREMVAVGHRASPAVSTAVVEGLVRAGKLDAGMELWEEMRRGG--LRPSFG 326
Query: 282 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
Y V++A R+ R+ +L G M + P TYA LVE V A+R
Sbjct: 327 LYTMVVEANARS---GRLDVATQLFGDM--EKSGFFPTPATYACLVEMHASAGQVDAAMR 381
Query: 342 HFRALQN 348
+ ++ N
Sbjct: 382 LYHSMAN 388
>gi|302819136|ref|XP_002991239.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
gi|300140950|gb|EFJ07667.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
Length = 561
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 110/274 (40%), Gaps = 16/274 (5%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG---DHEGAMHSLKRELSAGV 135
+ R R + V ++ G SP +++ ++ +Y+ G D + + S V
Sbjct: 199 YGRRRSFDKAEAVFQRLLTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTV 258
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDAN 193
+P + +G +G + + + +M E++ I + L K +DA
Sbjct: 259 KPDARMYNLMIHTYGKQGKVEQAMSVYQSMKRERVALTI----VTFNSLLACQKTWKDAE 314
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
VF + L Y ++ KA A +M AAG T +N L++
Sbjct: 315 DVFRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAY 374
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
A C PE A A + M+ ++ P E+Y +I AY + + +L M D
Sbjct: 375 AKCKDPEGARAVLKQMK--QNGCTPTVESYTSLISAYVSVNLMAKAEQT--VLRMKEAD- 429
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
LQPN++T+ +L+ + + +R F ++
Sbjct: 430 --LQPNLQTFCVLMTGYANGNKLDNMMRSFETMK 461
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 1/161 (0%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+A+ R A + DMIAAG+ P +++ L+ AY D EGA LK+ G P
Sbjct: 339 YAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPT 398
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFL 197
E+ +L + S L K + + M++ + Q + +L+ L++ + F
Sbjct: 399 VESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPNLQTFCVLMTGYANGNKLDNMMRSFE 458
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
GL +Y +++ D +A+ +M G
Sbjct: 459 TMKLAGLEPNRHVYTVLVNAYGSNDDFDSAIIWYKQMLGTG 499
>gi|145335386|ref|NP_172560.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242678|sp|Q0WVV0.1|PPR31_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g10910, chloroplastic; Flags: Precursor
gi|110741600|dbj|BAE98748.1| membrane-associated salt-inducible protein isolog [Arabidopsis
thaliana]
gi|332190541|gb|AEE28662.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 664
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 3/214 (1%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
A N + + I M G SP + L+ +Y+ GD++ A + S G+ P
Sbjct: 248 ASNGRSEEAENFIQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNK 307
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLR 198
+ L +++ GL + E+L+ +E Y + + +L++ L + LE+A +F
Sbjct: 308 VMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIFDD 367
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G+R+ +MI+ C++ A E++ + E N +L G
Sbjct: 368 MKGKGVRSDGYANSIMISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCRAGE 427
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
E + M+ E + PD T++ +I+ + +
Sbjct: 428 MESVMRMMKKMD--EQAVSPDYNTFHILIKYFIK 459
>gi|57899342|dbj|BAD87953.1| putative PPR protein [Oryza sativa Japonica Group]
Length = 650
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 95/209 (45%), Gaps = 7/209 (3%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G P + L+ AY+ N ++E A +K S+G+ P L L +++ GL K
Sbjct: 258 GHKPNLFHYSSLLNAYSENANYEKADLLMKDLRSSGLTPNKVILTTLLKVYSKGGLFEKA 317
Query: 159 LEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+L +E + + + IL++ LV+ + + +A +F + G+++ + +MI+
Sbjct: 318 RELLTELEASGFAQDEMPYCILIDGLVKERKIWEAMILFNDMKEKGVKSDGYAFSIMISA 377
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
+ G + ++A E EA N S +A C ++ + E +
Sbjct: 378 LHRGGYREESKQLAKEFEAKNATYDLVMLN--TSLRAYCSTNDMESVMIMLRKMDESNIS 435
Query: 278 PDTETYNCVIQAYTRAE----SYDRVQDV 302
PD T+N +I+ + A+ +Y +QD+
Sbjct: 436 PDAITFNTLIRYFCMAKVYHLAYKTIQDM 464
>gi|27452908|gb|AAO15292.1| Putative callose synthase [Oryza sativa Japonica Group]
Length = 2055
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 120/294 (40%), Gaps = 25/294 (8%)
Query: 92 IYDMIAA--GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+D +A G SP + H L+V + AM +S PL E A A L
Sbjct: 1728 FFDWLALRRGFSPSAHA-HNLLVENAGSLADYRAMSRAMESMSTRRVPLTER--AFAFLN 1784
Query: 150 GSKGLAT-KGLEILAAMEKINYDIRQAWLI-LVEELVRNKYLEDANKVFLRGAKGGLRAT 207
S+G A + ILA ++++ R + + LV+ L + A V A+G
Sbjct: 1785 TSQGSARDTAIAILATLDEVGGPCRASGVFSLVKALASIGEFDAAMSVIQETARGA---- 1840
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ +IA CK GD A E+ EM +G + +N+LL C G A E
Sbjct: 1841 -RYYNALIAVKCKTGDFHGAREVFDEMRRSGFGPNSNSWNYLLGCLLKNGRVAEACELVE 1899
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
ME E P++ TY I AY ++ R+ +L M + +L P + + +
Sbjct: 1900 AMERSEHNDIPNSLTYE--ILAYHACKA-GRMDSAMRILDQMFLE--KLTPRITIHTAFI 1954
Query: 328 ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381
+ + + +A R+ A+ + + SL + LC+ G I++
Sbjct: 1955 KGYLYAGRIDDACRYVSAMST--------RDRRSVNRNYSLLAKLLCKAGMIVD 2000
>gi|357503345|ref|XP_003621961.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496976|gb|AES78179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 140/349 (40%), Gaps = 33/349 (9%)
Query: 48 KHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSF 107
K D ++ +G +S+ L+ ME L + ++ ++A + + SP +F
Sbjct: 96 KTCDYMVEFHGFQISSKTFASNLL-MESLFKASQPKNA-------FKIFGETRSPNFLTF 147
Query: 108 HGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK 167
+ + + D + L+ L P T A+ F + +IL M
Sbjct: 148 NIALFHLSNFNDIVNVKYVLREMLRLRYCPNASTFSAVLNAFCKMNAFRQVYQILGLMIG 207
Query: 168 INYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSN 226
+ ++ W +L+ + L+ A+ +F + + Y +I ++ D +
Sbjct: 208 LGIELSVNVWTVLIHHFCKLGKLDVADDLFDKMIQSCCSPNSVTYTPLIKAVMESDDVTL 267
Query: 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286
AL + +M + G + +N L+ C + G+ E A FE + KPD T+ +
Sbjct: 268 ALRLEQKMNSVGIVPDLVFYNMLIDCLSKSGMHEEAIRVFEQKNF-----KPDKYTFTSL 322
Query: 287 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ A R+E +D LL +V+ K + + LV C + +A RAL
Sbjct: 323 LSAICRSEQFD-------LLPKLVQHCKHISRD------LVFCNALLISYVKAGYSSRAL 369
Query: 347 QNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDN 393
+ YE + +EG D + L ALC E R E ++ A+ D+
Sbjct: 370 ELYER----MISEGFKPDKYTFAGLLSALCAENRNDEAVKVWRAVTMDH 414
>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
Length = 660
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 132/315 (41%), Gaps = 54/315 (17%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTF------HFNHLLSCQATCGIPEVAFA 264
+ ++I CK +ALE+ +M+ F +N L+ G E A
Sbjct: 190 FGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGRQEEALC 249
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
M D P T T+NC+I Y R+ ++ +L M ++ +++PNV T
Sbjct: 250 LMGKMR--SDQCAPTTATFNCLINGYCRS---GEIEVAHKLFNEM--ENAQIEPNVITLN 302
Query: 325 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLE 384
LV+ K+ ++ A+ FR +Q + G K GN ++++ A C + + +E
Sbjct: 303 TLVDGMCKHNRISTAVEFFRVMQ--QKGLK-----GN-NVTYTVFINAFCNVNNMNKAME 354
Query: 385 ALEAMAKDNQPVPPRAMILSRKYRTLV------------SSWIEPLQEEAELGYEIDYIA 432
L+ M+KD P A++ Y TL+ SS + L+E G+ +D +
Sbjct: 355 FLDEMSKDG--CFPDAVV----YYTLICGLAQAGRLDDASSVVSKLKEA---GFCLDRVC 405
Query: 433 R--YISEGGLTGERKR---WVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRK 487
ISE + R W+ + PD+V + N + + F + + + K H+
Sbjct: 406 YNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTY---NTLISYFSK--IGNFKLAHKF 460
Query: 488 LLRTLQNEG--PAVL 500
+ + + EG P V
Sbjct: 461 MKKMTEEEGLSPTVF 475
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 105/263 (39%), Gaps = 5/263 (1%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ R+ + + + +M A + P + + LV + A+ + G++
Sbjct: 273 YCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGN 332
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFL 197
+ T F + K +E L M K + + L+ L + L+DA+ V
Sbjct: 333 NVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVS 392
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ + G Y+++I+E CK A E EME AG + +N L+S + G
Sbjct: 393 KLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIG 452
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
++A + M E+ + P TY +I AY + D + ++ M ++
Sbjct: 453 NFKLAHKFMKKMTE-EEGLSPTVFTYGALIHAYCLNNNID---EAIKIFKEMNNVASKVP 508
Query: 318 PNVKTYALLVECFTKYCAVTEAI 340
PN Y +L++ K V A+
Sbjct: 509 PNTVIYNILIDSLCKQTQVNFAL 531
>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
Length = 554
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 134/340 (39%), Gaps = 38/340 (11%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++D M AG+ P RSF LVV G E L G + T + R
Sbjct: 160 VFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLC 219
Query: 151 SKG-------LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
KG + LE+ +NY AW ++ L + +Y++ A V G
Sbjct: 220 EKGRFKDVSEFFRRMLEMGTPPNVVNYT---AW---IDGLCKRRYVKQAFHVLEEMVGRG 273
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
L+ + +I CK G A + ++ + H + + C ++A
Sbjct: 274 LKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVH-TYTVMIGGYCREGKLAR 332
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
A + E +KP+T TY +I + + S+DR EL+ M ++ PN+ TY
Sbjct: 333 AEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDR---AFELMNKMKQEG--FLPNIYTY 387
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL--SLYLRALCREGRIIE 381
+++ F K + EA + R + ++G D + ++ + C++G I
Sbjct: 388 NAVIDGFCKKGKIQEAYKVLR----------MATSQGLKFDKITYTILITEHCKQGHITY 437
Query: 382 LLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEE 421
L+ + M +N P Y +L+S++ + Q E
Sbjct: 438 ALDLFDRMV-ENGCCPD-----IEAYTSLISTYCQQRQME 471
Score = 42.7 bits (99), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 66/354 (18%), Positives = 128/354 (36%), Gaps = 58/354 (16%)
Query: 51 DSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGL 110
D+LL+ + + + + L + R +D V++ M+ G P ++
Sbjct: 193 DALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKD---VSEFFRRMLEMGTPPNVVNYTAW 249
Query: 111 VVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLI-ALARLFGSKGLATKGLEI-LAAM 165
+ + A H L+ + G++P H TLI L ++ G + + L +
Sbjct: 250 IDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKI----GWTERAFRLFLKLI 305
Query: 166 EKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
+ +Y + +++ R L A + +R + GL+ Y +I CK G
Sbjct: 306 KSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSF 365
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT----------FENMEYG-- 272
A E+ +M+ G + + +N ++ G + A+ F+ + Y
Sbjct: 366 DRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTIL 425
Query: 273 ---------------------EDYMKPDTETYNCVIQAYTRAESYDRVQ---DVAELLGM 308
E+ PD E Y +I Y + + Q D ++G+
Sbjct: 426 ITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGL 485
Query: 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF-RALQNYEGGTKVLHNEGN 361
+ P +TY ++ + K T A+R F R +QN +L N
Sbjct: 486 L--------PTKQTYTSMIAGYCKVGRSTMALRVFERMVQNGCFADSILMCSNN 531
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31850, chloroplastic; AltName: Full=Protein PROTON
GRADIENT REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 107/269 (39%), Gaps = 10/269 (3%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
++R +V MI G P +++ L+V D + M LK + G++P
Sbjct: 200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259
Query: 141 TLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
T R+ G G + EIL M E D+ + +L++ L + L+ A +VF +
Sbjct: 260 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDV-VTYTVLIDALCTARKLDCAKEVFEK 318
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G + Y ++ D + + EME G + F L+ G
Sbjct: 319 MKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGN 378
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
AF T + M + + P+ TYN +I R R+ D EL G M + ++P
Sbjct: 379 FGEAFDTLDVMR--DQGILPNLHTYNTLICGLLRVH---RLDDALELFGNM--ESLGVKP 431
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQ 347
TY + ++ + K A+ F ++
Sbjct: 432 TAYTYIVFIDYYGKSGDSVSALETFEKMK 460
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 8/193 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P ++ L+ + G+ + A KR + GVRP +T L G
Sbjct: 917 MLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Query: 155 ATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVF--LRGAKGGLRATDEI 210
+GL +++ +N D+ + +++ L ++ LE+A +F ++ ++ G+
Sbjct: 977 VDEGLHYFKELKESGLNPDV-VCYNLIINGLGKSHRLEEALVLFNEMKTSR-GITPDLYT 1034
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ +I AG A +I E++ AG F FN L+ + G PE A+A ++ M
Sbjct: 1035 YNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1094
Query: 271 YGEDYMKPDTETY 283
G P+T TY
Sbjct: 1095 TGG--FSPNTGTY 1105
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 83/385 (21%), Positives = 149/385 (38%), Gaps = 38/385 (9%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I ++ L + +A DV+ D G+ P +++ L+ + A+
Sbjct: 368 ILVDALCKAGNFGEAFDTLDVMRD---QGILPNLHTYNTLICGLLRVHRLDDALELFGNM 424
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI----NYDIRQAWLILVEELVRN 186
S GV+P T I +G G + LE M+ N A L + + R+
Sbjct: 425 ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRD 484
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+ +A ++F GL Y++M+ K G+ A+++ EM G
Sbjct: 485 R---EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVV 541
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
N L++ + A+ F M+ E +KP TYN ++ + ++Q+ EL
Sbjct: 542 NSLINTLYKADRVDEAWKMFMRMK--EMKLKPTVVTYNTLLAGLGKN---GKIQEAIELF 596
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL-HNEGNFGDP 365
MV+ K PN T+ L +C K VT A++ + + V +N FG
Sbjct: 597 EGMVQ--KGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFG-- 652
Query: 366 LSLYLRALCREGRIIELLEALEAMAKDNQP--------VPP--RAMILSRKYRTLVSSWI 415
L + G++ E + M K P +P +A ++ Y+ + +
Sbjct: 653 -------LVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLY 705
Query: 416 EPLQEEAELGYEIDYIARYISEGGL 440
+ A L +E D I ++E G+
Sbjct: 706 NCADQPANLFWE-DLIGSILAEAGI 729
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENM 269
++++I+ KAG+ +AL++ Y++ + + T + L+ + G A FE M
Sbjct: 858 HNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGM 917
Query: 270 -EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+YG +P+ YN +I + +A D L MV++ R P++KTY++LV+
Sbjct: 918 LDYG---CRPNCAIYNILINGFGKAGEADAA---CALFKRMVKEGVR--PDLKTYSVLVD 969
Query: 329 CFTKYCAVTEAIRHFRALQ 347
C V E + +F+ L+
Sbjct: 970 CLCMVGRVDEGLHYFKELK 988
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 25/239 (10%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L+++++ +A +V+ R G R + + Y ++ K D + + + EME G
Sbjct: 194 LIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLG 253
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ F + G A+ + M+ ++ PD TY +I A A D
Sbjct: 254 LKPNVYTFTICIRVLGRAGKINEAYEILKRMD--DEGCGPDVVTYTVLIDALCTARKLDC 311
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
++V E M HK P+ TY L++ F+ R L + + +
Sbjct: 312 AKEVFE--KMKTGRHK---PDRVTYITLLDRFSDN----------RDLDSVKQFWSEMEK 356
Query: 359 EGNFGD--PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
+G+ D ++ + ALC+ G E + L+ M +Q + P Y TL+ +
Sbjct: 357 DGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMR--DQGILPNL----HTYNTLICGLL 409
>gi|222618680|gb|EEE54812.1| hypothetical protein OsJ_02231 [Oryza sativa Japonica Group]
Length = 637
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 95/209 (45%), Gaps = 7/209 (3%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G P + L+ AY+ N ++E A +K S+G+ P L L +++ GL K
Sbjct: 245 GHKPNLFHYSSLLNAYSENANYEKADLLMKDLRSSGLTPNKVILTTLLKVYSKGGLFEKA 304
Query: 159 LEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+L +E + + + IL++ LV+ + + +A +F + G+++ + +MI+
Sbjct: 305 RELLTELEASGFAQDEMPYCILIDGLVKERKIWEAMILFNDMKEKGVKSDGYAFSIMISA 364
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
+ G + ++A E EA N S +A C ++ + E +
Sbjct: 365 LHRGGYREESKQLAKEFEAKNATYDLVMLN--TSLRAYCSTNDMESVMIMLRKMDESNIS 422
Query: 278 PDTETYNCVIQAYTRAE----SYDRVQDV 302
PD T+N +I+ + A+ +Y +QD+
Sbjct: 423 PDAITFNTLIRYFCMAKVYHLAYKTIQDM 451
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 26/240 (10%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L R + ++ N++ K +R + + +++ CKA AL++ + G
Sbjct: 287 LLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKG 346
Query: 239 RM------ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
FN L+ G E + E M+ G + +P+T TYNC+I + +
Sbjct: 347 GSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMG-NINRPNTVTYNCLIDGFFK 405
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
A ++DR EL M E+ +QPNV T LV+ K+ V A+ F ++ G
Sbjct: 406 AGNFDRAH---ELFRQMNEE--GVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMK----G 456
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVS 412
+ N + +S A C I ++ E M P A++ Y +L+S
Sbjct: 457 KGLKGNAATYTALIS----AFCGVNNINRAMQCFEEMLSSG--CSPDAVV----YYSLIS 506
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 103/260 (39%), Gaps = 14/260 (5%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ L +H R R + +M GL ++ L+ A+ + AM + L
Sbjct: 434 LVDGLCKHGR---VHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEML 490
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLE 190
S+G P +L G +++ ++ + + R + +L+ + K LE
Sbjct: 491 SSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLE 550
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
++ + G++ Y+ +I+ K GD + A ++ +M G + + ++
Sbjct: 551 RVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAII 610
Query: 251 SCQATCGIPEV--AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
A C V F M + P+T YN +I A R DR + E + +
Sbjct: 611 --HAYCSKKNVDEGMKIFGEM-CSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKV 667
Query: 309 MVEDHKRLQPNVKTYALLVE 328
KR++PN TY +++
Sbjct: 668 -----KRVRPNTTTYNAILK 682
>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g16010-like [Cucumis sativus]
Length = 637
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 121/313 (38%), Gaps = 53/313 (16%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA--GVRPLHETLIALARL 148
V Y + +P ++ L++ G HE +H L E+ + P T AL
Sbjct: 181 VFYQIKGRKCNPTATVYNTLILMLMHEGHHE-KIHELYNEICSEGNCSPDTITYSALISA 239
Query: 149 FGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
FG +E+ ++ R L +E+ N GL T+
Sbjct: 240 FGK-------------LERYDFAFR-----LFDEMKEN----------------GLHPTE 265
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+IY ++A K AL + EM+ G T F + L+ G + A++ F N
Sbjct: 266 KIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFN 325
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
M +D KPD N +I RA R++D +L G M D + PNV TY +++
Sbjct: 326 ML--KDGCKPDVVLINNLINILGRA---GRLEDALKLFGKM--DSLQCAPNVVTYNTVIK 378
Query: 329 C-FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
F +EA F ++ + + + ++ + C+ R+ + L LE
Sbjct: 379 AIFESKAPASEAALWFEKMK----ANGIAPSSFTY----AILIDGFCKTNRVEKALLLLE 430
Query: 388 AMAKDNQPVPPRA 400
M + P P A
Sbjct: 431 EMDEKGFPPCPAA 443
>gi|326497659|dbj|BAK05919.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 523
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 26/260 (10%)
Query: 85 APRVNDVIYDMIA------AGLSPGPRS--FHGLVVAYTLNGDHEGAMHSLK--RELSAG 134
+ R DV+ D+IA P P + ++ L+ Y NGD E A L RE + G
Sbjct: 182 SSRCPDVLADLIADLRDLRNKYLPAPNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCG 241
Query: 135 -VRPLHETLIALARLFGSKGLATK---GLEILAAMEKINYDI--RQAWLILVEELVRNKY 188
VRP L+ + L G A K E+ M + ++ + + + ++++ R
Sbjct: 242 DVRP---NLVTYSTLLGGLCRAGKMKEAFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQ 298
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+E A +F K Y +I CK GD NA + EM +AG +
Sbjct: 299 VEKARTIFGFMRKNECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTA 358
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
L+ C G + ME E K D TYN +++ + R+ +V +LLG
Sbjct: 359 LIGCLCRHGSVDEGIDLV--MEMREKGCKADVVTYNLLLEGLCKD---GRMAEVMDLLGR 413
Query: 309 MVEDHKRLQPNVKTYALLVE 328
+ E+ +Q NV +Y +++
Sbjct: 414 LPEEG--VQLNVASYRIVMN 431
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 62/239 (25%)
Query: 184 VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME--AAGRMA 241
+RNKYL N +Y+++I K GD A + EM G +
Sbjct: 199 LRNKYLPAPNTC--------------VYNILIKHYVKNGDSETAFRVLDEMREYTCGDVR 244
Query: 242 TTF-HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
++ LL G + AF FE M +D++ PD TYN +I + R ++ +
Sbjct: 245 PNLVTYSTLLGGLCRAGKMKEAFELFEGM-IEKDHIVPDQLTYNVIIDGFCRLGQVEKAR 303
Query: 301 DVAELL------------GMMVEDHKR------------------LQPNVKTYALLVECF 330
+ + ++ H + ++P+ +Y L+ C
Sbjct: 304 TIFGFMRKNECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCL 363
Query: 331 TKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRALCREGRIIELLEAL 386
++ +V E I ++ E G K V +N L L LC++GR+ E+++ L
Sbjct: 364 CRHGSVDEGID--LVMEMREKGCKADVVTYN---------LLLEGLCKDGRMAEVMDLL 411
>gi|222632349|gb|EEE64481.1| hypothetical protein OsJ_19331 [Oryza sativa Japonica Group]
Length = 506
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 165/380 (43%), Gaps = 55/380 (14%)
Query: 49 HGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGL-SPGPRSF 107
H L+S GS V + R++ ++ H R DA + D +M+A+G P P+ +
Sbjct: 31 HHLRLISRPGSPVPPSPTAYRVVVKSLVVDHGRLTDALELKD---EMLASGFVGPDPQVY 87
Query: 108 HGLVVAYTLNGDHEGAMHSLKRELS--AGVRPLHETLI--ALARLFGSKGLATKGLE--- 160
+ L+ + GD A+ L EL G P+ + ++ +L + + G+ K +E
Sbjct: 88 NLLMAGFVEAGDGAKAVE-LYEELKEKIGREPILDGIVYGSLMKAYFLMGMEEKAMECYK 146
Query: 161 -ILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEI--YDLM 214
+L A ++ + +++ +V+ RN+ L+DA ++F LR L+ ++ + ++
Sbjct: 147 EVLGAESEVRFGA-ESYNGVVDAFGRNRRLDDAIELFERMLREHDPPLKIAVDVRSFSVI 205
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
+ C AG +A+ M +A +N+L+ + G+ V+ A E GE
Sbjct: 206 VDAYCAAGRFGDAISWFRRMGEWEVVADVAAYNNLIRHLSLQGL--VSEAELLYKEMGES 263
Query: 275 YMKPDTETYNCVIQAYTR----------------------AESYDRVQDVAELLGMMVED 312
+K D ETY ++Q R A +Y ++ D GM+
Sbjct: 264 GLKADEETYVLLMQGCFRVDRIDEGINYFDGMAELGLKPDATAYHKIVDGLIGFGMLDNA 323
Query: 313 H--------KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD 364
H K + P++ +Y L++ + ++ ++I + + E KV+ ++ D
Sbjct: 324 HGYLDKMRGKEISPSIASYEALLKAYIGEASLDKSIDIAKDILLDE---KVVFSD-EMRD 379
Query: 365 PLSLYLRALCREGRIIELLE 384
L LR REG I +L E
Sbjct: 380 LLEGALREAGREGDITKLYE 399
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 7/232 (3%)
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE 160
SP +F ++ + G+ A + + +G+ P T A+ G K E
Sbjct: 287 SPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFE 346
Query: 161 ILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220
+ M K N ++ +L++ L+ NK +E A + + GL+A Y L+I CK
Sbjct: 347 LWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCK 406
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
G + AL I E E G TF ++ ++ G+ E A M+ ++ K ++
Sbjct: 407 NGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMK--KNRRKLNS 464
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+N +I Y RA ++++ +L M K P V +Y ++ K
Sbjct: 465 HVFNSLINGYVRAF---KLEEAISVLREM--KSKDCAPTVVSYNTIINGLCK 511
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 134/327 (40%), Gaps = 55/327 (16%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G +PG RSF+ ++ A+ + A +AG+ P +T L ++ K KG
Sbjct: 109 GCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKG 168
Query: 159 LEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVF----LRGAK----------- 201
+L M +N DI ++ L+ L ++ L DA ++F +RG
Sbjct: 169 KGLLTWMFENGLNPDIL-SYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILID 227
Query: 202 GGLRATD---------------------EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
G LR D E Y++MI CK G ++E+ M+ +
Sbjct: 228 GFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKS 287
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
F F+ ++ + G A F+ M E + PD TYN ++ R ++
Sbjct: 288 PDLFTFSSMIHGLSKAGNFNAAEKVFQEMI--ESGLSPDVRTYNAMLSGLFRT---GKLN 342
Query: 301 DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG 360
EL +M +++ N+ +Y +L++ V +AI +++ L +E G K +
Sbjct: 343 KCFELWNVMSKNN---CCNIVSYNMLIQGLLDNKKVEQAICYWQLL--HERGLKA--DST 395
Query: 361 NFGDPLSLYLRALCREGRIIELLEALE 387
+G L + LC+ G + + L LE
Sbjct: 396 TYG----LLINGLCKNGYLNKALRILE 418
Score = 47.0 bits (110), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 7/151 (4%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L+ L +N YL A ++ G Y M+ CK G A+E+ ++M+
Sbjct: 399 LLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKN 458
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
R + FN L++ E A + M+ + P +YN +I +AE
Sbjct: 459 RRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKD--CAPTVVSYNTIINGLCKAE--- 513
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
R D L M+E+ L+P++ TY+LL++
Sbjct: 514 RFSDAYLSLKEMLEEG--LKPDMITYSLLID 542
>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 793
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 27/245 (11%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M G+ P ++ L+ G + A+ + L G +P T AL +L G +G
Sbjct: 344 EMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRG 403
Query: 154 LATKGLEILAAMEKINYDIRQA--------WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
K E++A + D+R A W L+ +N + + VF K G
Sbjct: 404 ---KFPEMMAVFD----DLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYV 456
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA--- 262
+ Y +I+ + G ++EI M AG +N +LS A G E A
Sbjct: 457 PERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKL 516
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE-LLGMMVEDHKRLQPNVK 321
FA EN++ +PD +Y+ ++ AY A+ D+++ ++E + +E H L VK
Sbjct: 517 FAEMENLD-----CRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGL---VK 568
Query: 322 TYALL 326
T L+
Sbjct: 569 TLVLV 573
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 15/232 (6%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P ++ LV A++ A+ +R ++ G++P T + ++ + K ++
Sbjct: 176 PDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWK--DV 233
Query: 162 LAAMEKINYDI----RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+A ++ + D R + L+ R ++A KVF G ++ ++
Sbjct: 234 VALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDV 293
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
KA H A+ + EME G + +N L+S G+ + A E ME ++
Sbjct: 294 YGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKG--IQ 351
Query: 278 PDTETYNCVIQAYTRAESYD-RVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
PD TY +I RA D + E+L +PN+ TY L++
Sbjct: 352 PDVITYTTLISGLDRAGKIDAAIGTYDEML------RNGCKPNLCTYNALIK 397
Score = 39.7 bits (91), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ +NR +V +++ M + ++ +++ L+ Y+ GD E + L S+G RP
Sbjct: 609 YGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPD 668
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVF 196
+ + +G KG + + + M+ DI + I V+ V N E+A +
Sbjct: 669 RYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDI-VTYNIFVKSYVANSMFEEAIDLV 727
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
G + + Y+ ++ E C+ G ++A
Sbjct: 728 RYMVTRGCKPNERTYNSILQEYCRHGKIADA 758
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 121/313 (38%), Gaps = 53/313 (16%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA--GVRPLHETLIALARL 148
V Y + +P ++ L++ G HE +H L E+ + P T AL
Sbjct: 181 VFYQIKGRKCNPTATVYNTLILMLMHEGHHE-KIHELYNEICSEGNCSPDTITYSALISA 239
Query: 149 FGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
FG +E+ ++ R L +E+ N GL T+
Sbjct: 240 FGK-------------LERYDFAFR-----LFDEMKEN----------------GLHPTE 265
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+IY ++A K AL + EM+ G T F + L+ G + A++ F N
Sbjct: 266 KIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFN 325
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
M +D KPD N +I RA R++D +L G M D + PNV TY +++
Sbjct: 326 ML--KDGCKPDVVLINNLINILGRA---GRLEDALKLFGKM--DSLQCAPNVVTYNTVIK 378
Query: 329 C-FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
F +EA F ++ + + + ++ + C+ R+ + L LE
Sbjct: 379 AIFESKAPASEAALWFEKMK----ANGIAPSSFTY----AILIDGFCKTNRVEKALLLLE 430
Query: 388 AMAKDNQPVPPRA 400
M + P P A
Sbjct: 431 EMDEKGFPPCPAA 443
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 8/200 (4%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDA 192
G+ P T L F K L +L M++ + A+ L++ L R K E A
Sbjct: 401 GIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAA 460
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
N++F + R++ +Y +MI G S+A+++ EM+ G + +N L+S
Sbjct: 461 NELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSG 520
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G+ + A + NM E+ PD +++N ++ + R E+ M E
Sbjct: 521 MIRAGMIDEAHSLMRNMR--ENGCTPDIKSHNIILNGLAKTGGPKR---AIEMFTKMKES 575
Query: 313 HKRLQPNVKTYALLVECFTK 332
+ P+ +Y ++ C ++
Sbjct: 576 E--IMPDAVSYNTILSCLSR 593
Score = 39.7 bits (91), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 92/200 (46%), Gaps = 9/200 (4%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV-RPLHETLIALARLFGSKGLATK 157
G P P ++ L+ + +E A + L +EL R + + FG+ G +
Sbjct: 436 GFPPCPAAYCSLIDSLGRAKRYEAA-NELFQELKENCGRSSARVYAVMIKHFGNCGRLSD 494
Query: 158 GLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
+++ M+K+ D+ + L+ ++R +++A+ + + G + +++++
Sbjct: 495 AVDLFCEMKKLGCSPDV-YTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIIL 553
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY-GED 274
K G A+E+ +M+ + M +N +LSC + G+ E+A M+ G +
Sbjct: 554 NGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFE 613
Query: 275 YMKPDTETYNCVIQAYTRAE 294
Y D+ TY+ +++A + +
Sbjct: 614 Y---DSITYSSILEAVGKVD 630
>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Glycine max]
Length = 827
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
++DA++V + GL+ Y +++ K GD +A + +M AAG + T + FN
Sbjct: 482 MDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNS 541
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
+++ C + V+ A + + + P + TYNC+I Y + + D + V +
Sbjct: 542 IIN--GLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMC- 598
Query: 309 MVEDHKRLQPNVKTYALLVECFTK 332
+ PNV TY L+ F K
Sbjct: 599 ----RSEISPNVITYTSLINGFCK 618
Score = 40.4 bits (93), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 31/230 (13%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
++ H + ++V+ +I +GL P ++ L+ GD E A + + ++AG+
Sbjct: 473 ILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGI 532
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-------ILVEELVRNKY 188
P T ++ GL G + A +K+N I+Q+++ +++ V+
Sbjct: 533 VPTDYTFNSII-----NGLCKVG-RVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGA 586
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
++ A V+ + + Y +I CK+ AL++ +M+ G +
Sbjct: 587 IDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYAT 646
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDY--------MKPDTETYNCVIQAY 290
L++ F ++ME + + P+T YN +I AY
Sbjct: 647 LIA----------GFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAY 686
>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
Length = 807
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFEN 268
Y +I CKAGD A + +M+ G +N L+ C + E+ A+ E
Sbjct: 260 YTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLI--HGHCRLQEIDRAYELLEE 317
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
M+ D++ PD TY+ +I RA+ R+ + +LLG + + PNV +Y L++
Sbjct: 318 MK-SNDFV-PDIFTYDILIAGLCRAK---RLSEARDLLGTL-RNEDDCTPNVVSYNTLID 371
Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 388
F+K V +A + F + V+ S +R LC GR E LE
Sbjct: 372 GFSKAARVNDAYQLFLEMVTAGQHPDVV--------TYSTLIRGLCNAGRASEAHSYLEE 423
Query: 389 M-AKDNQP-VPPRAMILS 404
M K P VP + ++S
Sbjct: 424 MVGKKILPKVPVYSSVIS 441
>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
Length = 410
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 11/156 (7%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
++ IL+ L R+ L+DA ++F + G+R + ++L+I KAG +NAL +M
Sbjct: 145 SYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQM 204
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+AAG + +N L+ C + ++A A ++ E + P TY +I A+ +
Sbjct: 205 KAAGLPPSVVTYNELIC--GFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKEN 262
Query: 295 SYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVE 328
DR MM+ + ++ L+ +V++Y +L+
Sbjct: 263 EMDRAF-------MMLSEMEKAGLEVDVQSYGVLLH 291
Score = 40.0 bits (92), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M AAGL P +++ L+ + D A+ + G+ P T L F +
Sbjct: 204 MKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENE 263
Query: 155 ATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ +L+ MEK ++ Q++ +L+ L + A K+F G++ +YD+
Sbjct: 264 MDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDM 323
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAG 238
MI + G AL + EM G
Sbjct: 324 MIYGYGREGSSYKALRLIMEMRKNG 348
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 10/258 (3%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
++ M+ +G+ P +++ ++ + G + A L+ + G P T +L +
Sbjct: 309 LHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368
Query: 152 KGLATKGLEILA-AMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
G + + + AMEK + LV+ L + + A ++ + G
Sbjct: 369 DGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWT 428
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM- 269
Y+L++ CK G S+A I + A G + F FN L+ + A + M
Sbjct: 429 YNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTML 488
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+G + PD TYN ++ +A D V D + M+E K PN+ TY +L+E
Sbjct: 489 SHG---ITPDVITYNTLLNGLCKARKLDNVVDTFK---AMLE--KGCTPNIITYNILIES 540
Query: 330 FTKYCAVTEAIRHFRALQ 347
F K V+EA+ F+ ++
Sbjct: 541 FCKDRKVSEAMELFKEMK 558
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 16/243 (6%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALARLFGSKGLATKG 158
P R+++ L+ ++ AM L + L + + P + +LI + G A K
Sbjct: 422 PNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKL 481
Query: 159 LEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
L++L K N + W + ++ L ++K +E+A +F + G++A + +Y +I
Sbjct: 482 LDLL----KENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALID 537
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
CKAG A+ + M + + + +N L+ G + + ENM + +
Sbjct: 538 GHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENM--SKMGV 595
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
KP TY +I+ R +D V M+ HK P+V TY + + V
Sbjct: 596 KPTVATYTILIEEMLREGDFDHANRVFN--QMVSFGHK---PDVYTYTAFIHTYCTSGNV 650
Query: 337 TEA 339
EA
Sbjct: 651 KEA 653
Score = 46.6 bits (109), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 89/218 (40%), Gaps = 7/218 (3%)
Query: 53 LLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVV 112
LL NG V +Q +F++ L + R +A D+ + G+ + L+
Sbjct: 484 LLKENGLV---PDQWTYSVFIDTLCKSKRMEEAC---DLFNSLKEKGIKANEVMYTALID 537
Query: 113 AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI 172
+ G + A+ L+R S P T +L +G +GL ++ M K+
Sbjct: 538 GHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKP 597
Query: 173 RQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIA 231
A + IL+EE++R + AN+VF + G + Y I C +G+ A +
Sbjct: 598 TVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMM 657
Query: 232 YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
M AG M + + L+S G+ AF + M
Sbjct: 658 ARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRM 695
Score = 46.2 bits (108), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 8/241 (3%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARL 148
N + + AGLSP ++ L++ Y N D A + G R + +
Sbjct: 234 NLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHG 293
Query: 149 FGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G +G+ + M E Y + + +++ L N + +F +
Sbjct: 294 LCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPN 353
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y +M+ CK + I EM G + + +N L+ G E A
Sbjct: 354 VHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILG 413
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
ME + +P+ TYN +I +++ + V LL M+E +L P++ TY L+
Sbjct: 414 LME--SNNCRPNERTYNELICGFSKRK---HVHKAMTLLSKMLES--KLTPSLVTYNSLI 466
Query: 328 E 328
Sbjct: 467 H 467
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 119/277 (42%), Gaps = 17/277 (6%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L++ +R+A V V M+ G+ P R++ L+VA+ D E + L+ + GV
Sbjct: 249 LVKSGFDREALEVYKV---MMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGV 305
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDAN 193
+P + R+ G + ILA ME D+ +L++ L + DA
Sbjct: 306 KPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDV-ITHTVLIQVLCDAGRISDAK 364
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
VF + K + Y ++ + G+ + +EI M+A G + ++
Sbjct: 365 DVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVI--D 422
Query: 254 ATCGIPEV--AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
A C + V A F+ M+ + + P+ +YN +I + +A DR D EL M
Sbjct: 423 ALCQVGRVFEALEMFDEMK--QKGIVPEQYSYNSLISGFLKA---DRFGDALELFKYM-- 475
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
D +PN T+ L + + K +AI+ + +++
Sbjct: 476 DIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKS 512
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 73 MEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEG-AMHSLKREL 131
++ L Q R +A + D +M G+ P S++ L+ + L D G A+ K
Sbjct: 421 IDALCQVGRVFEALEMFD---EMKQKGIVPEQYSYNSLISGF-LKADRFGDALELFKYMD 476
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYL 189
G +P T + +G G + K ++ M+ I D+ +L L ++ L
Sbjct: 477 IHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFG-LAKSGRL 535
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
A +VF G+ Y +MI KA A++I Y+M + N L
Sbjct: 536 GMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSL 595
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G + A+ F ++ E ++P TYN ++ R +V++V LL M
Sbjct: 596 IDTLYKAGRGDEAWQIFYQLK--EMNLEPTDGTYNTLLAGLGRE---GKVKEVMHLLEEM 650
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
H PN+ TY +++C K AV +A+
Sbjct: 651 Y--HSNYPPNLITYNTILDCLCKNGAVNDAL 679
Score = 46.6 bits (109), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 11/222 (4%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP--- 137
++R + D+ Y++++ G SP P ++ L+ G E A + L G +
Sbjct: 916 KSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCT 975
Query: 138 LHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKV 195
++ L+ R+ G+ K + M + IN DI+ ++ I+++ L + L D
Sbjct: 976 IYNILLNGHRIAGN---TEKVCHLFQDMVDQGINPDIK-SYTIIIDTLCKAGQLNDGLTY 1031
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F + + GL Y+L+I K+ A+ + EM+ G + + +N L+
Sbjct: 1032 FRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1091
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G A +E E KP+ TYN +I+ Y+ + S D
Sbjct: 1092 AGKAAEAGKMYE--ELLTKGWKPNVFTYNALIRGYSVSGSTD 1131
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 122/292 (41%), Gaps = 19/292 (6%)
Query: 64 AEQGLRL--IFMEELMQH-ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYT---LN 117
A G+ L F+ L++H + + A ++++ + G+S S++ L+ L
Sbjct: 791 ASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLI 850
Query: 118 GDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAW 176
EG +K EL G P T L G + L++ M + Y+ +
Sbjct: 851 DIAEGLFAEMK-ELGCG--PDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTY 907
Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
++ LV+++ LE A ++ G T Y ++ KAG +A + EM
Sbjct: 908 NTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLE 967
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA-ES 295
G A +N LL+ G E F++M + + PD ++Y +I +A +
Sbjct: 968 YGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMV--DQGINPDIKSYTIIIDTLCKAGQL 1025
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
D + +LL M L+P++ TY LL++ K + EA+ F +Q
Sbjct: 1026 NDGLTYFRQLLEM------GLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQ 1071
Score = 43.1 bits (100), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 47/246 (19%), Positives = 101/246 (41%), Gaps = 27/246 (10%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ L++ R DA ++ +M+ G ++ L+ + + G+ E H + +
Sbjct: 945 LLDGLLKAGRIEDA---ENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMV 1001
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLE 190
G+ P ++ + G GL + ++ + + +L++ L ++K LE
Sbjct: 1002 DQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLE 1061
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+A +F K G+ Y+ +I KAG + A ++ E+ G F +N L+
Sbjct: 1062 EAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALI 1121
Query: 251 SCQATCGIPEVAFATFENMEYG---------------EDYMKPDTETYNCVIQ------- 288
+ G + A+A + M G + ++K D+++Y ++
Sbjct: 1122 RGYSVSGSTDSAYAAYGRMIVGGCLPNSSTCHIHELMKTFLKGDSDSYEIIVTFINAEGM 1181
Query: 289 -AYTRA 293
AY+RA
Sbjct: 1182 LAYSRA 1187
>gi|357480587|ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511634|gb|AES92776.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 706
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 48/247 (19%)
Query: 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILA 163
P +F L+ Y + G+++G ++ + + GV+P L+ L + G A + +
Sbjct: 286 PATFSTLIKMYGVAGNYDGCLNVYEEMKALGVKP---NLVVYNTLLDAMGRAKRPWQART 342
Query: 164 AM-EKINYDI---RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC 219
E IN DI R + L+ R ++ EDA
Sbjct: 343 IYKEMINNDILPNRATYASLLHAYGRARFCEDA--------------------------- 375
Query: 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 279
L + EM T +N LL+ A G ++AF FE+M+ D PD
Sbjct: 376 --------LVVYREMREKEMDLNTHLYNSLLAMCADVGYTDLAFEIFEDMK-SSDTCSPD 426
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+ T++ +I Y+ + RV + ++ M+E +P + LV+C+ K +
Sbjct: 427 SWTFSSLITIYSCS---GRVSEAERMMNEMIESG--FEPTIFVLTSLVQCYGKAKRTDDV 481
Query: 340 IRHFRAL 346
++ F L
Sbjct: 482 VKTFNQL 488
>gi|195650415|gb|ACG44675.1| hypothetical protein [Zea mays]
Length = 558
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 83/199 (41%), Gaps = 8/199 (4%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
++P SF V G + A +L ++ G RP T A+ +G TK +
Sbjct: 173 VAPDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAM 232
Query: 160 EILAAMEKINYD--IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+L AM + + IR + LV L LE+A ++ + L T +IY I
Sbjct: 233 EVLDAMLGLGCEPTIRT-YNSLVGGLCYVGRLEEALELLKKLKDSPL--TPDIYTFTIVL 289
Query: 218 D--CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED- 274
D CK G A I ++ G TTF +N LL+ G P AFA M D
Sbjct: 290 DGFCKVGRTEEATAIFHDAIGMGLSPTTFTYNALLNGXCKEGNPLKAFALLMEMCGNNDA 349
Query: 275 YMKPDTETYNCVIQAYTRA 293
PD ++ V+ A RA
Sbjct: 350 ACLPDKTSFGIVLTALLRA 368
>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
Length = 806
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 110/261 (42%), Gaps = 19/261 (7%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDH--EGAMHSLKRELSAGVRPLHETLIA 144
R ++ DM++ G++ F+ VVA+ L E + ++ G+RP + A
Sbjct: 379 RAERILEDMLSIGMTVHCGLFN-TVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTA 437
Query: 145 LARLFGSKGLATKGLEI-LAAMEK---INYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
R G + + I + K +N A L+ L KY+++A KV
Sbjct: 438 CMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNA---LIHGLCEGKYMKEATKVIQTML 494
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
G+ Y++MI CK A+++ +M G F FN LL G E
Sbjct: 495 NKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKME 554
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD-VAELLGMMVEDHKRLQPN 319
F + M+ + ++PD +Y +I + +A+ + ++ + EL+ + L+PN
Sbjct: 555 ETFHLLDQMK--TEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELM------DRGLKPN 606
Query: 320 VKTYALLVECFTKYCAVTEAI 340
V Y L+ + + ++ AI
Sbjct: 607 VFIYNALIGGYGRNGDISGAI 627
Score = 47.4 bits (111), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 86/228 (37%), Gaps = 37/228 (16%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H + +D + + + +++ GL P ++ L+ Y NGD GA+ +++ S G++P
Sbjct: 582 HCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPT 641
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
+ T +L GL + I + + N D+
Sbjct: 642 NVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDL-------------------------- 675
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G G Y +MI CK G A+ EM + G + L+ + G
Sbjct: 676 GVIG--------YTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGN 727
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR-VQDVAEL 305
E A F+ M G + PD TY +I + S D+ + AEL
Sbjct: 728 SEEASKLFDEM-VGSGVI-PDNITYGTLIARCSEVNSLDKDIGHTAEL 773
>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 448
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 110/273 (40%), Gaps = 49/273 (17%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
++A +V D + D G P R+++ ++ A +G E A+ +R L+ G +P T
Sbjct: 160 QEAVQVLDALEDQ---GTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTY 216
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
AL +G G +E+A ++F +
Sbjct: 217 TALISAYGKTG----------------------------------KIEEALRIFQDMVRR 242
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G Y +I+ KAG ALE+ EM T FN LLS A G + A
Sbjct: 243 GCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAA 302
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR-VQDVAELLGMMVEDHKRLQPNVK 321
FE M KPD +Y +I A+ R + R +Q + E+ G + H+ P+V
Sbjct: 303 QDVFEQMPSCG--CKPDAVSYAILISAFDRGNQWCRALQALDEMQG---QGHR---PDVG 354
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354
Y +++E T+ ++ +A Q ++ T+
Sbjct: 355 VYNVVIEALTRSGVLSA---QLKAAQIFQAATR 384
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 25/241 (10%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
++++ L + LE++ ++F++ + GL Y+ +I K G + EM+
Sbjct: 235 VMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDV 294
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G + +N L++C AF F M+ + +KP+ TY+ +I A+ +
Sbjct: 295 GCVPDIITYNGLINCYCKFEKMPRAFEYFSEMK--NNGLKPNVVTYSTLIDAFCKE---G 349
Query: 298 RVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
+Q +LL D +R L PN TY L++ K +TEA + + + G K+
Sbjct: 350 MMQGAIKLL----XDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDM--LQAGVKL 403
Query: 356 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
N +L L LC+ GR+IE E +M KD + P + Y LV +I
Sbjct: 404 -----NIVTYTAL-LDGLCKAGRMIEAEEVFRSMLKDG--ISPNQQV----YTALVHGYI 451
Query: 416 E 416
+
Sbjct: 452 K 452
Score = 46.6 bits (109), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 83/424 (19%), Positives = 163/424 (38%), Gaps = 40/424 (9%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L + +++ + V DMI AG++P +++ ++ GD E + + G+
Sbjct: 202 LHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGL 261
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY-----LE 190
P T +L +G G LE +A++ D+ I+ + N Y +
Sbjct: 262 SPDVVTYNSLIDGYGKVG----SLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMP 317
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
A + F GL+ Y +I CK G A+++ +M G + F + L+
Sbjct: 318 RAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLI 377
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
G A+ +M + +K + TY ++ +A R+ + E+ M+
Sbjct: 378 DANCKAGNLTEAWKLLNDML--QAGVKLNIVTYTALLDGLCKA---GRMIEAEEVFRSML 432
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY- 369
+D + PN + Y LV + K + +A++ + + E N L LY
Sbjct: 433 KDG--ISPNQQVYTALVHGYIKAERMEDAMKILKQM-----------TECNIKPDLILYG 479
Query: 370 --LRALCREGRIIE---LLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAEL 424
+ C + ++ E +LE +++ PV +I + S + QE ++
Sbjct: 480 SIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDV 539
Query: 425 GYEIDYIARYI-----SEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLE 479
G E + + E G+ + R L P+ +Y++ ++ C+E
Sbjct: 540 GVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVA--VYTSLIDGLCXNNCIE 597
Query: 480 DGKK 483
KK
Sbjct: 598 SAKK 601
>gi|125549696|gb|EAY95518.1| hypothetical protein OsI_17364 [Oryza sativa Indica Group]
Length = 847
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 11/236 (4%)
Query: 117 NGDHEGAMHSLKRELSAGVRPLH-ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA 175
+G E A KR AG R L AL L ++GLA K E+L M + +
Sbjct: 251 HGLLEPAFFCFKRLRDAGFRVLETHAYNALLSLLLTRGLAFKAFEVLDEMSSSGCALDEG 310
Query: 176 -WLILVEELVRNKYLEDANKVF--LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
+ ++V L R ++ A K+F +R +G RA+ +Y +++ KAG A+ +
Sbjct: 311 TYELVVPALARAGRIDAARKMFDEMRKREGIGRASAGMYGVLVDVLAKAGRLDAAMGMYR 370
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
EM A G A+ ++ G + +E M G ++P Y V++A R
Sbjct: 371 EMVAVGHRASPAVSTAMVEGLVRAGKLDAGMELWEEMRRGG--LRPSFGLYTMVVEANAR 428
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
+ R+ +L G M + P TYA LVE V A+R + ++ N
Sbjct: 429 S---GRLDVATQLFGDM--EKSGFFPTPATYACLVEMHASAGQVDAAMRLYHSMAN 479
>gi|326487712|dbj|BAK05528.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 455
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 26/260 (10%)
Query: 85 APRVNDVIYDMIA------AGLSPGPRS--FHGLVVAYTLNGDHEGAMHSLK--RELSAG 134
+ R DV+ D+IA P P + ++ L+ Y NGD E A L RE + G
Sbjct: 173 SSRCPDVLADLIADLRDLRNKYLPAPNTCVYNILIKHYVKNGDSETAFRVLDEMREYTCG 232
Query: 135 -VRPLHETLIALARLFGSKGLATK---GLEILAAMEKINYDI--RQAWLILVEELVRNKY 188
VRP L+ + L G A K E+ M + ++ + + + ++++ R
Sbjct: 233 DVRP---NLVTYSTLLGGLCRAGKMKEAFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQ 289
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+E A +F K Y +I CK GD NA + EM +AG +
Sbjct: 290 VEKARTIFGFMRKNECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTA 349
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
L+ C G + ME E K D TYN +++ + R+ +V +LLG
Sbjct: 350 LIGCLCRHGSVDEGIDLV--MEMREKGCKADVVTYNLLLEGLCKD---GRMAEVMDLLGR 404
Query: 309 MVEDHKRLQPNVKTYALLVE 328
+ E+ +Q NV +Y +++
Sbjct: 405 LPEEG--VQLNVASYRIVMN 422
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 62/239 (25%)
Query: 184 VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME--AAGRMA 241
+RNKYL N +Y+++I K GD A + EM G +
Sbjct: 190 LRNKYLPAPNTC--------------VYNILIKHYVKNGDSETAFRVLDEMREYTCGDVR 235
Query: 242 TTF-HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
++ LL G + AF FE M +D++ PD TYN +I + R ++ +
Sbjct: 236 PNLVTYSTLLGGLCRAGKMKEAFELFEGM-IEKDHIVPDQLTYNVIIDGFCRLGQVEKAR 294
Query: 301 DVAELL------------GMMVEDHKR------------------LQPNVKTYALLVECF 330
+ + ++ H + ++P+ +Y L+ C
Sbjct: 295 TIFGFMRKNECEPNAFNYATLINGHCKKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCL 354
Query: 331 TKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRALCREGRIIELLEAL 386
++ +V E I ++ E G K V +N L L LC++GR+ E+++ L
Sbjct: 355 CRHGSVDEGID--LVMEMREKGCKADVVTYN---------LLLEGLCKDGRMAEVMDLL 402
>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
Length = 671
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 133/340 (39%), Gaps = 38/340 (11%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++D M AG+ P RSF LVV G E L G + T + R
Sbjct: 168 VFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLC 227
Query: 151 SKG-------LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
KG + LE +NY AW ++ L + +Y++ A V G
Sbjct: 228 EKGRFKDVSEFFRRMLETGTPPNVVNY---TAW---IDGLCKRRYVKQAFHVLEEMVGRG 281
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
L+ + +I CK G A + ++ + H + + C ++A
Sbjct: 282 LKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVH-TYTVMIGGYCREGKLAR 340
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
A + E +KP+T TY +I + + S+DR EL+ M ++ PN+ TY
Sbjct: 341 AEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDR---AFELMNKMKQEG--FLPNIYTY 395
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL--SLYLRALCREGRIIE 381
+++ F K + EA + R + ++G D + ++ + C++G I
Sbjct: 396 NAVIDGFCKKGKIQEAYKVLR----------MATSQGLKFDKITYTILITEHCKQGHITY 445
Query: 382 LLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEE 421
L+ + M +N P Y +L+S++ + Q E
Sbjct: 446 ALDLFDRMV-ENGCCPD-----IEAYTSLISTYCQQRQME 479
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 92/484 (19%), Positives = 179/484 (36%), Gaps = 87/484 (17%)
Query: 51 DSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGL 110
D+LL+ + + + + L + R +D V++ M+ G P ++
Sbjct: 201 DALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKD---VSEFFRRMLETGTPPNVVNYTAW 257
Query: 111 VVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLI-ALARLFGSKGLATKGLEI-LAAM 165
+ + A H L+ + G++P H TLI L ++ G + + L +
Sbjct: 258 IDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKI----GWTERAFRLFLKLI 313
Query: 166 EKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
+ +Y + +++ R L A + +R + GL+ Y +I CK G
Sbjct: 314 KSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSF 373
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT----------FENMEYG-- 272
A E+ +M+ G + + +N ++ G + A+ F+ + Y
Sbjct: 374 DRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTIL 433
Query: 273 ---------------------EDYMKPDTETYNCVIQAYTRAESYDRVQ---DVAELLGM 308
E+ PD E Y +I Y + + Q D ++G+
Sbjct: 434 ITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGL 493
Query: 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF-RALQNYEGGTKVLHNEGNFGDPLS 367
+ P +TY ++ + K T A+R F R +QN G F D ++
Sbjct: 494 L--------PTKQTYTSMIAGYCKVGRSTLALRVFERMVQN-----------GCFADSIT 534
Query: 368 L--YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILS-------RKYRTLVSSWIEPL 418
+ LC+E R+ E E M D + VP ++ R+ ++ S ++ L
Sbjct: 535 YGALISGLCKESRLEEAKALYEGML-DKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRL 593
Query: 419 QEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCL 478
+ ++ + +D + R +S G ++ K LD D + + T F C
Sbjct: 594 DKRQQV-HTVDVVVRKLSALGDVDAASLFL----KKVLDED---YAVDHATYTGFINSCY 645
Query: 479 EDGK 482
E+ +
Sbjct: 646 ENNR 649
>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Brachypodium distachyon]
Length = 814
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 37/235 (15%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ + +D + N+ + +++A GL P ++ L+ Y NG+ GA+ L S G++P
Sbjct: 592 YCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPT 651
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
+ T +L GL +++A +F +
Sbjct: 652 NVTYCSLMHWMCHAGL----------------------------------VDEAKTMFEQ 677
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
K + Y +MI CK G A+ EM + + L+ G
Sbjct: 678 SRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGN 737
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR-VQDVAELLGMMVED 312
E A F+ M + PD +YN ++ +++ +S D+ ++ AE+ +M ++
Sbjct: 738 NEEASKLFDEMV--SSGIVPDNVSYNTLVTGFSQVDSLDKAIEKAAEISSIMTQN 790
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 9/163 (5%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L K ++ A +V G+ + Y++MI CK AL++ +M G
Sbjct: 483 LIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKG 542
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ FN ++ G E A M+ + ++PD +Y +I Y +A+ +
Sbjct: 543 FKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKI--EGVQPDVVSYGTIIDGYCKAKDIQK 600
Query: 299 VQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
+ + EL+ L+PN Y L+ + + ++ AI
Sbjct: 601 ANEYLNELMAC------GLKPNAVIYNALIGGYGRNGNISGAI 637
>gi|356531098|ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Glycine max]
Length = 466
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 23/219 (10%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A+ +L++ L + +EDA ++ + + ++ E Y++++ C+ + + +++ E
Sbjct: 133 NAFNLLLDALCKCCLVEDAESLY-KKMRKTVKPNAETYNILVFGWCRVRNPTRGMKLLEE 191
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY-GEDYMKPDTETYNCVIQAYTR 292
M G F +N + G+ A FE M G P +TY +I A +
Sbjct: 192 MIELGHRPDNFTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPTAKTYAIIIVALAQ 251
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN---- 348
+DR++D +L+G M+ P+V TY ++E + EA + + N
Sbjct: 252 ---HDRMEDCFKLIGHMISSG--CLPDVTTYKEIIEGMCMCGKIDEAYKFLEEMGNKSYR 306
Query: 349 -----YEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL 382
Y KVL + D L LY GR+IEL
Sbjct: 307 PDIVTYNCFLKVLCDNKKSEDALKLY-------GRMIEL 338
>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
Length = 1025
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 36/201 (17%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P R+++ +++A ++G + A+ +R L+AG +P T AL +G G +
Sbjct: 295 GIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRA 354
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
L+I +++VR G Y +I+
Sbjct: 355 LQIF------------------QDMVRR----------------GCERNVITYSSLISAC 380
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
KAG ALE+ EM G +N L++ A E A FE M++ KP
Sbjct: 381 EKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQH--RGCKP 438
Query: 279 DTETYNCVIQAYTRAESYDRV 299
D T+ +I AY RA + R
Sbjct: 439 DAVTFGGLIAAYDRAGHWRRA 459
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 102/264 (38%), Gaps = 40/264 (15%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
+++ L + + A ++F GL + +Y +I CKA ALE+ +M+ A
Sbjct: 311 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 370
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
T +N L+ G E A A F+ M E KPD TYN ++ + +A + D
Sbjct: 371 CTPDTITYNILIDGLCKSGDVEAARAFFDEML--EAGCKPDVYTYNILVSGFCKAGNTDA 428
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN---------Y 349
V + M H PNV TY L+ K +T+A +F+ ++ Y
Sbjct: 429 ACGVFD---DMSSSH--CSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVY 483
Query: 350 EGGTKVLHNEGNFGDPLSLY-----------------LRALCREGRIIELLEALEAMAKD 392
L G L+ + LC+ R+ E + A+ K+
Sbjct: 484 SSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKE 543
Query: 393 NQPVPPRAMILSRKYRTLVSSWIE 416
P P Y +++S+ I+
Sbjct: 544 GMPHP-------YAYNSIISTLIK 560
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 99/226 (43%), Gaps = 11/226 (4%)
Query: 124 MHSLKRELSAGVRPLH-ETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVE 181
+ +L +E+ A RPL TL+ L +G + ++ E A+ L++
Sbjct: 14 LETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLID 73
Query: 182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA 241
LV + E A V+ + + G + Y+++I ++G +A+E+ EM+ G
Sbjct: 74 ILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEP 133
Query: 242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
+ + L++ G + A + F+ M E + P+ TYN ++ A+ + D
Sbjct: 134 DEYTYGFLVNALGKAGRVQEARSFFDAML--ERGLTPNIPTYNLLMDAFRKVGQLDMA-- 189
Query: 302 VAELLGMMVEDHKR-LQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
LG+ E +R QP+V TY +L++ V A + F +
Sbjct: 190 ----LGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKM 231
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 100/253 (39%), Gaps = 20/253 (7%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-------LHETLIALAR 147
M+ GL+P +++ L+ A+ G + A+ G +P L + L + R
Sbjct: 161 MLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGR 220
Query: 148 LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+ ++ L K + + Y LV L ++ +E+A+KVF G+
Sbjct: 221 VGAARKLFHKMTGDGCSPDSYTYST------LVNGLGKSGRVEEAHKVFREMVDRGVAVD 274
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ ++A KAG+ ++ EM G F FN ++ P+ A F
Sbjct: 275 LVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFA 334
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M E KPD +YN +I +Y R + ++L MVE P KTY L+
Sbjct: 335 RMV--ESGCKPDLISYNILIDSYAR---FGDAAQARQMLEEMVE--AGFIPETKTYNSLI 387
Query: 328 ECFTKYCAVTEAI 340
V EA
Sbjct: 388 HWLATDGQVDEAF 400
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 123/325 (37%), Gaps = 48/325 (14%)
Query: 84 DAPRVND---VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
D R+ D + DM G P ++ L+ ++ G H + R+ GV P
Sbjct: 345 DMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRD---GVVPNTV 401
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL---ILVEELVRNKYL----EDAN 193
T AL + + +EI +A+ N + L EL+R E A
Sbjct: 402 TYNALMNVL------MENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAM 455
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
+ KG T Y+++I C +GD A+ + M+A G + + L+S
Sbjct: 456 SMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELIS-- 513
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
C I ++ A+ E + + P+ TY +I Y + E D M+E
Sbjct: 514 GFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLD-------CAARMLERM 566
Query: 314 KR--LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG---TKVLHNEGNFGDPL-- 366
KR +PNV+TY +L+ TK N+ G KV+ E D +
Sbjct: 567 KRSGCRPNVQTYNVLIHGLTKQ-------------NNFSGAEELCKVMLEEKISPDVVTY 613
Query: 367 SLYLRALCREGRIIELLEALEAMAK 391
S + LC G I LE M K
Sbjct: 614 STVINGLCNNGAIPLALEMFNKMVK 638
Score = 39.7 bits (91), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 102/264 (38%), Gaps = 19/264 (7%)
Query: 91 VIYDMIAA-GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
++++M+ G P S++ L+ Y GD E AM L L P T + + +
Sbjct: 421 IVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGY 480
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLI--LVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G + +L M K N W L+ + +E A+ +F GL
Sbjct: 481 CDSGDTDVAIRVLELM-KANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPN 539
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN---HLLSCQAT-CGIPEVAF 263
+ Y +I+ CK A + M+ +G +N H L+ Q G E+
Sbjct: 540 EVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 599
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
E + + PD TY+ VI + + E+ MV+ H L PN+ TY
Sbjct: 600 VMLE------EKISPDVVTYSTVINGLCNNGA---IPLALEMFNKMVK-HGCL-PNLHTY 648
Query: 324 ALLVECFTKYCAVTEAIRHFRALQ 347
+ L++ + V EA F L+
Sbjct: 649 SSLIQALGQEGRVEEAEEMFSELK 672
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/346 (20%), Positives = 144/346 (41%), Gaps = 29/346 (8%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
+F + H + +VND+ +M A GLSP ++ L+ + G+ A +
Sbjct: 571 MFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEM 630
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE 190
++ G+ P AL F +G + +L + +N D+ I E+ + ++
Sbjct: 631 VNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKL--VNIDMIPGCSISTIEIDKISHVV 688
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
D A G + + +++++I CK+G ++A + + + F ++ L+
Sbjct: 689 DTI------ADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLI 742
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
A G + AF+ + M + P+ TYN +I ++ R ++ L
Sbjct: 743 HGCAASGSIDEAFSLRDVMLSAG--LTPNIITYNSLIYGLCKSGKLSRAVNLFNKL---- 796
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYL 370
K + PN TY L++ + K TEA + + + V+ S+ +
Sbjct: 797 -QSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVI--------TYSILI 847
Query: 371 RALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
LC +G + E ++ L+ M ++N V P + Y TL+ +I+
Sbjct: 848 YGLCTQGYMEEAIKLLDQMIENN--VDPNYI----TYCTLIHGYIK 887
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 71/350 (20%), Positives = 136/350 (38%), Gaps = 27/350 (7%)
Query: 72 FMEELMQHARNRDA--PRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
F +M A RD + + + +M GL ++H ++ Y G E A L+
Sbjct: 219 FTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILES 278
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI---RQAWLILVEELVRN 186
G+ P T L + + G + ++ M++ DI A+ +++ +
Sbjct: 279 LQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETG-DIVVDEVAYGMMINGYCQR 337
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
++DA +V G+ +Y+ MI CK G ++ EME G + +
Sbjct: 338 GRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSY 397
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
N L+ G AF M + + T TYN +++ + + D D L
Sbjct: 398 NTLIDGYCREGSMRKAFEMCRMMV--RNGLAATTLTYNTLLKGFCSLHAID---DALRLW 452
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL 366
+M++ + + PN + + L++ K +A+ ++ V+
Sbjct: 453 FLMLK--RGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVI--------TF 502
Query: 367 SLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
+ + LC+ GR+ E E L+ M + PP ++ YRTL + +
Sbjct: 503 NTVINGLCKIGRMAEAEELLDRMKE--LRCPPDSL----TYRTLFDGYCK 546
>gi|255569835|ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534795|gb|EEF36485.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 913
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 93/418 (22%), Positives = 152/418 (36%), Gaps = 61/418 (14%)
Query: 7 TPFPFISPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQ 66
TPF IS L G V + S KKQ K D+L+ SV
Sbjct: 135 TPFE-ISHFLDTLSDGFVDVDS-----------KKQSLFMSKVYDALVKAYVSV------ 176
Query: 67 GLRLIFMEELMQHARNRDAPRV-------NDVI----YDMIAA--------GLSPGPRSF 107
G+ ++ L Q R R P + N +I DM A GLSP ++
Sbjct: 177 GMFDDAIDVLFQMGRRRFVPHIFICNFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTY 236
Query: 108 HGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK 167
++ A +NG E AM+ +K +G+ P A ++ G ++L A +
Sbjct: 237 AIVIKALCINGSLEEAMYVIKEMEESGITPTGFAYTAYIEGLCVNEMSDLGYQVLQAWKG 296
Query: 168 INYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSN 226
N + A+ + V + A V K G+ Y +I CKAG+
Sbjct: 297 ANIPLDMYAYTVAVRGFCNELKFDKAESVLRDMEKEGMVPDMHCYTALICRFCKAGNLLK 356
Query: 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286
A EM + G +L C G+ F + ++ D +YN V
Sbjct: 357 AYAFLNEMMSKGVKVNCVIVGSILHCLCELGMHSEVVDQFNQFKSLGLFL--DGVSYNNV 414
Query: 287 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ A + ++++ LL M K++ +V Y L+ YC + F+
Sbjct: 415 VDALCKL---GKLEEAITLLDEM--KMKQINMDVMHYTTLIN---GYCCQGNVVDAFKVF 466
Query: 347 QNY-EGGTKVLHNEGNFGDPLS--LYLRALCREGRIIELLEALEAMAKDNQPVPPRAM 401
+ E G ++ D ++ + + CR G E L L+ M Q + P ++
Sbjct: 467 EEMRENGIEI--------DVVTYDVLVSGFCRNGLATEALNLLDYM--QTQKLKPNSI 514
>gi|422294672|gb|EKU21972.1| putative udp-glucosyltransferase, partial [Nannochloropsis gaditana
CCMP526]
Length = 535
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 96/238 (40%), Gaps = 5/238 (2%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+ + + +A D V+ M A ++P ++ L+ AYTL GD +GA L+R
Sbjct: 289 MTYTTLMTAYAAGGDVEGSEAVLERMEEACIAPNVMTYTVLMTAYTLRGDVKGAEGVLRR 348
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKY 188
+SA V P T L + G A E+LA ME + L+
Sbjct: 349 MISAYVAPNANTYTTLLHAYTVNGNAAGAEEVLARMEAAGVLPTALTFATLMTVYAARGE 408
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+E A V R G+ T +D ++ AGD A ++ EA +N
Sbjct: 409 VESAKGVLARMEAAGVGPTAMAFDTLLNAYVVAGDVGGAEQVLRRREAEAYPDFPLTYNT 468
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
L++ A G +VA A + PD T + ++ AY AE+ D + A LL
Sbjct: 469 LMNGYADKG--DVAGAEGVLARMRAKGVGPDETTLSTLLHAY--AEAGDPLGAEAVLL 522
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 16/235 (6%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
F + +A RD V+ ++A GL P ++ L+ AY GD EGA L+R L
Sbjct: 210 FHTVMKVYADERDPEGAEMVLGWLLARGLLPDVVTYTTLMHAYAGRGDTEGAEAVLRRML 269
Query: 132 SA-----------GVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLI 178
V P T L + + G +L ME+ I ++ ++
Sbjct: 270 EGEGGRVREEEVLRVLPNVMTYTTLMTAYAAGGDVEGSEAVLERMEEACIAPNVMTYTVL 329
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
+ +R ++ A V R + Y ++ G+ + A E+ MEAAG
Sbjct: 330 MTAYTLRGD-VKGAEGVLRRMISAYVAPNANTYTTLLHAYTVNGNAAGAEEVLARMEAAG 388
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
+ T F L++ A G E A ME + P ++ ++ AY A
Sbjct: 389 VLPTALTFATLMTVYAARGEVESAKGVLARMEAAG--VGPTAMAFDTLLNAYVVA 441
>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Brachypodium distachyon]
Length = 613
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR 239
++ L++ + A +V+ R K R E Y LMI K+ +A++I EM++ G
Sbjct: 264 LDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIGC 323
Query: 240 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 299
A + L++ A G+ E A FE M+ + +PD YN +++AY+RA
Sbjct: 324 KANICTYTALVNAFAREGLCEKAEEVFEQMQ--QAGHEPDVYAYNALMEAYSRA---GFP 378
Query: 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
Q +E+ +M H +P+ +Y +LV+ + + EA F +L+
Sbjct: 379 QGASEIFSLM--QHMGCEPDRASYNILVDAYGRAGLHREAEATFESLK 424
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 8/189 (4%)
Query: 123 AMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILV 180
AM S G + T AL F +GL K E+ M++ + D+ A+ L+
Sbjct: 311 AMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDV-YAYNALM 369
Query: 181 EELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
E R + + A+++F G Y++++ +AG H A E +E M
Sbjct: 370 EAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREA-EATFESLKQQGM 428
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
A T +H+L A V + + ++PDT N ++ AY RA R+
Sbjct: 429 APTMK-SHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYARA---GRLD 484
Query: 301 DVAELLGMM 309
D+ LL M
Sbjct: 485 DMERLLAAM 493
>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
Length = 595
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 116/287 (40%), Gaps = 41/287 (14%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+IF++E M+H G +P +++ L A+ GD A + R
Sbjct: 223 IIFVDERMRHVH-----------------GCAPNAVTYNCLADAFCRVGDIGMACKIVAR 265
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAW----------LIL 179
GV P +I + + G GL G + AA+E + R W L
Sbjct: 266 MEKEGVAP---NVITMNTIIG--GLCRVG-RVGAALEFFR-EKRTVWPEARGNAVTYSTL 318
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR 239
+ ++ A ++F A G R +Y MI+ +AG +A A M+ AG
Sbjct: 319 ASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGF 378
Query: 240 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 299
+N L+ A+ E M+ ++PD TYN ++ +A + V
Sbjct: 379 KLDAKAYNILIGGFCRKKKLHEAYELLEEMK--GVGLQPDVYTYNTLLSGLCKAGDFSAV 436
Query: 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
ELLG M++D QP+V T+ LV + K EA+R FR++
Sbjct: 437 D---ELLGHMIDDG--CQPSVVTFGTLVHGYCKAGKTDEALRIFRSM 478
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 11/170 (6%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ ++ L + L DA K G + + Y+++I C+ A E+ EM+
Sbjct: 350 YFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMK 409
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNCVIQAYTRA 293
G + +N LLS G F+ + + +D +P T+ ++ Y +A
Sbjct: 410 GVGLQPDVYTYNTLLSGLCKAG----DFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKA 465
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
D + + D R+QPN Y L++ K V AI+ F
Sbjct: 466 GKTDEALRIFRSM-----DEARIQPNTVIYNTLIDFLCKSREVDVAIKLF 510
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
Query: 163 AAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKA 221
A+M+K + + +A+ IL+ R K L +A ++ GL+ Y+ +++ CKA
Sbjct: 371 ASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKA 430
Query: 222 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 281
GD S E+ M G + F L+ G + A F +M+ E ++P+T
Sbjct: 431 GDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMD--EARIQPNTV 488
Query: 282 TYNCVIQAYTRAESYDRVQDVA-ELLGMMVEDHKRLQPNVKTYALLVE 328
YN +I ++ R DVA +L M E K + NV TY L++
Sbjct: 489 IYNTLIDFLCKS----REVDVAIKLFDEMRE--KNVPANVTTYNALLK 530
>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
[Acanthamoeba castellanii str. Neff]
Length = 559
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 130/330 (39%), Gaps = 19/330 (5%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
+F L + R D R+ V DM G+ PG ++ L+ A+ GD + +
Sbjct: 100 VFDVLLQGYGRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMWQAWEDM 159
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD----IRQAWLILVEELVRN 186
G+RP ++ G G A M++ + D R + +V +
Sbjct: 160 REQGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYGQQ 219
Query: 187 KYLEDANKVFLR-GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH 245
+ ++ + R A GL + + ++A +AG ALE + A G +
Sbjct: 220 QMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIAATGGQPSLHA 279
Query: 246 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
+ +L T G + T + M+ +KP T YN +I A+ +A + + + +
Sbjct: 280 WTAILHMLGTAGRSDEMLRTLDKMK--RLGVKPSTAVYNTIINAFGKARN---IHSMMDT 334
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365
M D + +VKTY L++ + K EA F L EG ++ + D
Sbjct: 335 FKAMRRDG--VAADVKTYNTLIDTWAKTGKAVEA-EKFYVLMKREGLQPTMYTIASLMDA 391
Query: 366 LSLYLRALCREGRIIELLEAL--EAMAKDN 393
Y RA E +++ L+ + E A DN
Sbjct: 392 ---YTRADQFE-KVLRLISRMKKEGRAPDN 417
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 123/329 (37%), Gaps = 65/329 (19%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
M++ G++P +++ LV A G + A+ L+ AG P T L F G
Sbjct: 180 SMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAG 239
Query: 154 LATKGLEILAAMEKINYDIRQAWL--------ILVEELVRNKYLEDANKVFLRGAKGGLR 205
G E L M +R+ L +V + + +EDA KVF + GL
Sbjct: 240 -EVDGAERLVGM------MREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLA 292
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-------- 257
Y+ ++ CKAG AL + EM G M F L+ G
Sbjct: 293 PDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTL 352
Query: 258 ----------IPEVAFAT----FENMEYGEDYM-----------KPDTETYNCVIQAYTR 292
+ EV F F + +D + KP YN +I Y
Sbjct: 353 VRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCM 412
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
R+ + ELL M + K L+P+V TY+ ++ + K C A +E
Sbjct: 413 V---GRMDEARELLHEM--EAKGLKPDVVTYSTIISAYCKNCDTHSA---------FELN 458
Query: 353 TKVLHNEGNFGDPL--SLYLRALCREGRI 379
++L +G D + S +R LC E R+
Sbjct: 459 QQMLE-KGVLPDAITYSSLIRVLCGEKRL 486
>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
Length = 697
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 10/236 (4%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+SP S+ LV A+ GD E M+ ++ +P ++ +KGL
Sbjct: 290 GISPDIYSYSILVNAFCTEGDIESGMNLIQEMEHCNKKPPLVCCTSVLMGLRTKGLVNDC 349
Query: 159 LEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
L + Y D+ ++ L+ ++ ++ AN + K GL IY +I
Sbjct: 350 LNFFHELSAKGYKHDL-ISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYISLIR 408
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
E C+ G AL+ Y M G NH++ + G E A M+ + +
Sbjct: 409 EYCRKGCLKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMK--DQNI 466
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
P++ TY+ +I + Y V+ E+L +M +D+ + P+V Y +++ + K
Sbjct: 467 LPNSYTYSVIINWLCK---YQAVEKAWEVLPVMFKDN--IFPSVIHYTTIMDGYAK 517
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 115/285 (40%), Gaps = 16/285 (5%)
Query: 50 GDSLLSTNGSVVSAAEQGL---RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRS 106
G ++ S N V + GL +I++ + ++ R Y M+ GL P +
Sbjct: 378 GHNVKSANNLVHEMRKNGLVPDYIIYISLIREYCRKGCLKEALKNFYTMLQDGLQPDIIT 437
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
+ +V Y G E A+ + + + P T + K E+L M
Sbjct: 438 CNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWEVLPVMF 497
Query: 167 KINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
K N + I+ + K A K++ + K G + + +++ K G
Sbjct: 498 KDNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKLGCKPDNVTLTVLVDMFSKRGKM 557
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
S AL + EM G F F ++ G + A++ ++ M+ + + P+ +TY
Sbjct: 558 SKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKMK--RNNVTPNVKTYT 615
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLV 327
C++ + + + D + M+++D KR + P+VKTY L+
Sbjct: 616 CLVDGFCKLKRLD-------MATMLIDDMKRNSVTPDVKTYTALI 653
>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16710, mitochondrial; Flags: Precursor
gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 507
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 120/314 (38%), Gaps = 16/314 (5%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+NR ++ M G P +++ LV G A L+ + + P
Sbjct: 199 CKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNV 258
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLR 198
T AL F G + E+ M +++ Y + L+ L L++A ++F
Sbjct: 259 ITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYL 318
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+ G + IY +I CK+ + ++I YEM G +A T + L+ G
Sbjct: 319 MERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGR 378
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
P+VA F M PD TYN ++ ++ + E + + +
Sbjct: 379 PDVAQEVFNQMS--SRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYM-----RKREMDI 431
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
N+ TY ++++ K V +A F +L + G K N + +S CR G
Sbjct: 432 NIVTYTIIIQGMCKLGKVEDAFDLFCSL--FSKGMK--PNVITYTTMIS----GFCRRGL 483
Query: 379 IIELLEALEAMAKD 392
I E + M +D
Sbjct: 484 IHEADSLFKKMKED 497
>gi|387219245|gb|AFJ69331.1| putative udp-glucosyltransferase, partial [Nannochloropsis gaditana
CCMP526]
Length = 521
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 96/238 (40%), Gaps = 5/238 (2%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+ + + +A D V+ M A ++P ++ L+ AYTL GD +GA L+R
Sbjct: 275 MTYTTLMTAYAAGGDVEGSEAVLERMEEACIAPNVMTYTVLMTAYTLRGDVKGAEGVLRR 334
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKY 188
+SA V P T L + G A E+LA ME + L+
Sbjct: 335 MISAYVAPNANTYTTLLHAYTVNGNAAGAEEVLARMEAAGVLPTALTFATLMTVYAARGE 394
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+E A V R G+ T +D ++ AGD A ++ EA +N
Sbjct: 395 VESAKGVLARMEAAGVGPTAMAFDTLLNAYVVAGDVGGAEQVLRRREAEAYPDFPLTYNT 454
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
L++ A G +VA A + PD T + ++ AY AE+ D + A LL
Sbjct: 455 LMNGYADKG--DVAGAEGVLARMRAKGVGPDETTLSTLLHAY--AEAGDPLGAEAVLL 508
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 16/235 (6%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
F + +A RD V+ ++A GL P ++ L+ AY GD EGA L+R L
Sbjct: 196 FHTVMKVYADERDPEGAEMVLGWLLARGLLPDVVTYTTLMHAYAGRGDTEGAEAVLRRML 255
Query: 132 SA-----------GVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLI 178
V P T L + + G +L ME+ I ++ ++
Sbjct: 256 EGEGGRVREEEVLRVLPNVMTYTTLMTAYAAGGDVEGSEAVLERMEEACIAPNVMTYTVL 315
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
+ +R ++ A V R + Y ++ G+ + A E+ MEAAG
Sbjct: 316 MTAYTLRGD-VKGAEGVLRRMISAYVAPNANTYTTLLHAYTVNGNAAGAEEVLARMEAAG 374
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
+ T F L++ A G E A ME + P ++ ++ AY A
Sbjct: 375 VLPTALTFATLMTVYAARGEVESAKGVLARMEAAG--VGPTAMAFDTLLNAYVVA 427
>gi|357144033|ref|XP_003573143.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g38730-like [Brachypodium distachyon]
Length = 599
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A L+ L R + A+KVF + G+ +Y+ M+ KA D A +
Sbjct: 147 HACTALLTALARARMTATAHKVFNEMGRAGVAMNTHVYNAMLHVCLKARDALRAEGLMTR 206
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+AAG F FN +++ G+ A E M+ ++ ++PD T+N VI +
Sbjct: 207 MDAAGVPLDRFSFNTVIALYVRKGMQYEAMCVRERMQ--DEGVEPDIVTWNTVIHGLCKE 264
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
R+++ A+L M+ ++P+ TY LV+ + + V EA++
Sbjct: 265 ---GRMKEAAQLRTDMIA--AAVEPDTVTYTTLVDGYCRIGDVGEAVK 307
>gi|224113637|ref|XP_002316529.1| predicted protein [Populus trichocarpa]
gi|222859594|gb|EEE97141.1| predicted protein [Populus trichocarpa]
Length = 678
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 35/238 (14%)
Query: 165 MEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
ME +N + ++V L ++ L++A VF R K G+ +++M+ CK GD
Sbjct: 235 MENVN-----TFNVVVHALCKDCKLQEALSVFYRILKSGIWPNVVTFNMMVDGACKMGDM 289
Query: 225 SNALEIAYEME--AAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 281
AL++ +ME +AG + + +N L+ C I + A E + ++P+
Sbjct: 290 DLALKLVRKMEIMSAGSIKPNSVTYNSLI--DGFCKIGGITVAEELRNEMMKIDIEPNVR 347
Query: 282 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
TY +I+ Y+RA +++ L MVE + L PN Y +I
Sbjct: 348 TYATMIEGYSRAGC---LEEALRLCDEMVE--RGLLPNSVVY--------------NSIM 388
Query: 342 HFRALQ-NYEGGTKVLHNEGNFGDPL-----SLYLRALCREGRIIELLEALEAMAKDN 393
H+ ++ + +G + V + + PL S+ R LCR G I L+ L + ++N
Sbjct: 389 HWLYMEGDVDGASLVFTDMSDKQIPLDKFTCSILTRGLCRNGYITTALKFLNQVLENN 446
>gi|357120628|ref|XP_003562027.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15280-like, partial [Brachypodium distachyon]
Length = 1278
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/273 (19%), Positives = 118/273 (43%), Gaps = 15/273 (5%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R R+ +++DV+ DM G+SP ++ LV + +GD + ++ L ++ G+ P +
Sbjct: 961 RRRNILQIHDVLKDMKHNGISPDKTTYDFLVYGFHKSGDSDRSVSMLDACIAQGLTPSNR 1020
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI---LVEELVRNKYLEDANKVFL 197
+L + + G K LE+ +E+ + + LI L+ L+ + +A
Sbjct: 1021 SLRIVLSHYCRLGNLEKSLELFYLIERSGW--KHGLLIEMTLISSLLSFRRHSEAKSCLN 1078
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
++ L +D +D++I E C GD ++ + M GR+ ++ ++ C
Sbjct: 1079 NLSRNALIISDINFDVLIKEFCIQGDVEMSVNLLNTMLKKGRLPGEASYSSVI--YRLCI 1136
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+ E A E +++KP + + +I+ + R+ D +L M++
Sbjct: 1137 LKEFDQALDFLAEMKLEHLKPSDISCDALIRGLC---AIGRISDAKNILEMLMT-----F 1188
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
+V ++ + F YC + + L + +
Sbjct: 1189 GSVPSFGMYRIVFDNYCTSNNTLEATQLLHDMQ 1221
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 104/254 (40%), Gaps = 10/254 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
+ + G+ P +F+ L+ L+ +H+ AM + G RP T L S
Sbjct: 404 LTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRK 463
Query: 155 ATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ L +L ME +N R + L++ +NK +E+A ++F G+ Y+
Sbjct: 464 LEEALNLLKEME-LNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYN 522
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I CK+ +A ++ +M G F +N LL+ G + A + M
Sbjct: 523 TLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMT-- 580
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
PD TY +I +A RVQ + LL + L P+ Y +++ K
Sbjct: 581 SSGCNPDIVTYATLISGLCKA---GRVQVASRLLRSIQMKGMVLTPH--AYNPVIQALFK 635
Query: 333 YCAVTEAIRHFRAL 346
EA+R FR +
Sbjct: 636 RNRTHEAMRLFREM 649
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 121/299 (40%), Gaps = 20/299 (6%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M + GLSP +F ++ Y G+ +GA+ ++ + G T+ L F +G
Sbjct: 228 EMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQG 287
Query: 154 LATKGLEIL--AAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
+ L + A E D + + LV L + + + A +V GGL Y
Sbjct: 288 RIDQALSFIQEAVSEGFRPD-QFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTY 346
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+ +I+ CK G+ A++I +M + +N ++S + C V AT
Sbjct: 347 NSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIIS--SLCKENRVDEATEIARLL 404
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ PD T+N +IQ + ++ D+ E + K +P+ TY +L++
Sbjct: 405 TSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEM-----KGKGCRPDEFTYNMLIDSLC 459
Query: 332 KYCAVTEAIRHFRALQ-NYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+ EA+ + ++ N V++N + C+ RI E E + M
Sbjct: 460 SSRKLEEALNLLKEMELNGCARNVVIYNT---------LIDGFCKNKRIEEAEEIFDEM 509
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
+A RV D MI G P ++ LV + GD +GA+ +++ G RP T
Sbjct: 132 EACRVMD---KMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYN 188
Query: 144 ALARLFGSKGLATKGLEILAAMEKINY---DIRQAWLILVEELVRNKYLEDANKVFLRGA 200
+ S L++ ME+ D+ + +V+ LV++ ++DA ++
Sbjct: 189 NIMHGLCSGRKLDSALQLFKEMEESGSCPPDVF-TYSTIVDSLVKSGKVDDACRLVEAMV 247
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
G Y ++ CKAG A + M +G +N ++ G +
Sbjct: 248 SKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRID 307
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
A+ E M G +P+ TY ++ A+ + + +D L+ +MVE K PN+
Sbjct: 308 EAYHLLEEMVDGG--CQPNVVTYTVLLDAFCKC---GKAEDAIGLVEVMVE--KGYVPNL 360
Query: 321 KTYALLVECFTK 332
TY L++ F K
Sbjct: 361 FTYNSLLDMFCK 372
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 7/153 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ I++ L + +++++AN V K G Y +I CK G+ ALEI +
Sbjct: 538 TYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLL 597
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G F+ + + G A E M + PDT TYN +++ + A
Sbjct: 598 LSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAG--LVPDTVTYNTLLKGFCDAS 655
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
R +D +L +M + +P+ TY LV
Sbjct: 656 ---RTEDAVDLFEVMRQ--CGCEPDNATYTTLV 683
>gi|343427006|emb|CBQ70534.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1388
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 16/228 (7%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL P ++ L+ + L D + A H+L+ ++AG P T AL F GL
Sbjct: 717 GLQPDTYTYTILIHGFALRRDPDSAAHALRAMIAAGKSPDRITYAALLNCFVESGLYESA 776
Query: 159 LEILAAME-----KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ + A M+ ++ I +IL ++ + ++ K K GL Y L
Sbjct: 777 IRLFAWMQNQRDSRVRPTIEVCNIILKAYVLSSLPVQKVMKFVDTVRKLGLVPNASTYAL 836
Query: 214 MIAEDCKAGDHSNALEIAYEMEAA---------GRMATTFHFNHLLSCQATCGIPEVAFA 264
M+ C AG A E+ E E+A A +HF ++ G + A
Sbjct: 837 MLQSACDAGLMDVAEEVFSEAESALPDLTGSGSRHGANIYHFTIMIHGYLRLGDHQEAKD 896
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
F+ M+ + + P T++ ++ +Y +E+ L+ +V D
Sbjct: 897 YFDEMQGRK--LTPSAITWSVMVHSYAHSENEANYDLACNLVSQLVTD 942
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 87/211 (41%), Gaps = 21/211 (9%)
Query: 142 LIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEEL-VRNKYLEDANKVFLRGA 200
L+A + SKG ++A + D++ L E+ ++ +D A
Sbjct: 592 LLAQLKRRSSKGHDEFARRVMAELAAARGDVQTLHTRLAEQFDFEARHTDDC-------A 644
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT--TFHFNHLLSCQATCGI 258
+G + + Y L+I + C D + E Y +A R T + FN ++
Sbjct: 645 EGKIPLNGKAYGLLI-KSCNRSDDVDLAEF-YLTQALERGITPRSSDFNLIIDMHVRKTN 702
Query: 259 PEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+ A A F+ M ++G ++PDT TY +I + D A L M+ K
Sbjct: 703 IDAALAVFDQMKDFG---LQPDTYTYTILIHGFALRRDPD---SAAHALRAMIAAGK--S 754
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
P+ TYA L+ CF + AIR F +QN
Sbjct: 755 PDRITYAALLNCFVESGLYESAIRLFAWMQN 785
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 13/156 (8%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
++++ VR ++ A VF + GL+ Y ++I D +A M AA
Sbjct: 692 LIIDMHVRKTNIDAALAVFDQMKDFGLQPDTYTYTILIHGFALRRDPDSAAHALRAMIAA 751
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY-MKPDTETYNCVIQAYTRA--- 293
G+ + LL+C G+ E A F M+ D ++P E N +++AY +
Sbjct: 752 GKSPDRITYAALLNCFVESGLYESAIRLFAWMQNQRDSRVRPTIEVCNIILKAYVLSSLP 811
Query: 294 -ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+ + D LG++ PN TYAL+++
Sbjct: 812 VQKVMKFVDTVRKLGLV--------PNASTYALMLQ 839
>gi|326532582|dbj|BAK05220.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 697
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 11/182 (6%)
Query: 160 EILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+I +MEK N D + ++L+ R +D+ K F R + G++ + + +I
Sbjct: 293 KIFESMEKNNVQPDHVTSSIMLLVMKRRKASAKDSWKFFQRMNRKGVKWSLGVSASLIKI 352
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
C G AL EME G + T +N +++ C E A F M+ E +K
Sbjct: 353 FCDEGMKKEALIFQSEMEKRGIPSNTSIYNTIMNVYCKCSQIEEAEGLFAEMK--EKGLK 410
Query: 278 PDTETYNCVIQAYTRAESYDRVQ-DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
P TYN ++ AY+R R+Q +V E L + + D QPN ++Y L+ + + +
Sbjct: 411 PTKVTYNILMDAYSR-----RLQPEVVESLLLEMHDLG-FQPNARSYNCLISAYGRQKKM 464
Query: 337 TE 338
+E
Sbjct: 465 SE 466
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 86/218 (39%), Gaps = 46/218 (21%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHS---LKRELSAGVRPLHETLI 143
+ D M G+ S+ L+ AY ++G +E A + +KRE G++P ET
Sbjct: 467 KAEDAFLRMKKGGIKATSSSYTSLICAYAVSGQYEKAHIAYLDMKRE---GLKPSLETYT 523
Query: 144 ALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
AL +F G K +E +M EK+ R + ++++ L ++ A V K
Sbjct: 524 ALLDIFRRAGNTEKLMETWKSMTDEKVGC-TRVTFHMVLDGLAKHGLFVQARDVICEFGK 582
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
GL T Y++++ K G H ++ EM
Sbjct: 583 IGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEM--------------------------- 615
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 299
+T E +KPD+ TY+ +I AY R + R
Sbjct: 616 --STLE--------LKPDSVTYSTLIYAYARVRDFSRA 643
Score = 39.7 bits (91), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 82/208 (39%), Gaps = 41/208 (19%)
Query: 174 QAWLILVEELVRNKYL-EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
+++ L+ R K + E A FLR KGG++AT Y +I +G + A IAY
Sbjct: 449 RSYNCLISAYGRQKKMSEKAEDAFLRMKKGGIKATSSSYTSLICAYAVSGQYEKA-HIAY 507
Query: 233 -EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM---------------------- 269
+M+ G + + LL G E T+++M
Sbjct: 508 LDMKREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKH 567
Query: 270 -----------EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E+G+ + P TYN ++ AY + + ++ + + + + L+P
Sbjct: 568 GLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTL-----ELKP 622
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ TY+ L+ + + + A + + +
Sbjct: 623 DSVTYSTLIYAYARVRDFSRAFYYHKQM 650
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ LVR +++ A +++ +GG+ ++M+ CK N + +ME G
Sbjct: 228 LLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKG 287
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
A +N L++ G+ E AF + + M+P TYN ++ + YDR
Sbjct: 288 VFADIVTYNTLINAYCREGLVEEAFQLLNS--FSSRGMEPGLLTYNAILYGLCKIGKYDR 345
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTY-ALLVE 328
+DV L+ M+ L PN TY LLVE
Sbjct: 346 AKDV--LIEML---QLGLTPNAATYNTLLVE 371
Score = 48.1 bits (113), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 92/420 (21%), Positives = 164/420 (39%), Gaps = 40/420 (9%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R DV+ +M+ GL+P +++ L+V + A GV P + +L
Sbjct: 345 RAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLI 404
Query: 147 RLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
+ G + L ME+ I D + IL++ RN L DA K+ G
Sbjct: 405 GVLARNGHLYQALMHFREMERSGIVPD-NVIYTILIDGFCRNGALSDALKMRDEMLARGC 463
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
Y+ + CK ++A + EM G + + F L+ G + A
Sbjct: 464 FMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALN 523
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
FE M +KPD TYN +I + +A R + EL M+ K + P+ +Y
Sbjct: 524 LFEAMV--RTNLKPDKVTYNTLIDGFCKAGEMGRAK---ELWDDMIR--KDIIPDHISYG 576
Query: 325 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLE 384
++ F + EA+ Q E G + N +L ++ CR G + + E
Sbjct: 577 TVLNGFCSSGLLPEALN--LCDQMLEKGIR-----PNLVTCNTL-IKGYCRSGDMPKAYE 628
Query: 385 ALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP---------LQEEAELGYEIDYIARYI 435
L M N +P S Y TL+ +++ + E + G + + I +
Sbjct: 629 YLSKMI-SNGIIPD-----SFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNL 682
Query: 436 SEGGLTGERK-----RWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLR 490
G E K + + + + ++PD G YS+ + Q +++ ++H ++L+
Sbjct: 683 ILNGFCAEGKMQEAEQVLRKMIEIGINPD--GATYSSLINGHVSQDNMKEAFRFHDEMLQ 740
>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
Length = 969
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 92/252 (36%), Gaps = 24/252 (9%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M + G SP ++ L+ AY A R + AG P T AL G
Sbjct: 515 EMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAG 574
Query: 154 LATKGLEILAAMEKINYDIRQAWLI-----------------LVEELVRNKYLEDANKVF 196
+ K E+ A M + ++ + L++ L + + DA ++
Sbjct: 575 ESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELL 634
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ G IYD +I CK G NA E+ + M G + T + L+
Sbjct: 635 DVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKD 694
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
++A M E P+ TY +I R Q +LL MM + +
Sbjct: 695 RRLDLAIKVLSQML--ESSCTPNVVTYTAMIDGLCRI---GECQKALKLLSMM--EKRGC 747
Query: 317 QPNVKTYALLVE 328
PNV TY L++
Sbjct: 748 NPNVVTYTSLID 759
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 64/319 (20%), Positives = 126/319 (39%), Gaps = 26/319 (8%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IALARLF 149
+I M+ G +P P F+ LV +Y D+ A L R G P + I + +
Sbjct: 331 IISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSIC 390
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLIL--------VEELVRNKYLEDANKVFLRGAK 201
+ L + ++LA EK+ ++ + +L L + A ++ +
Sbjct: 391 SGEELPSP--DLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMR 448
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G Y +I C+A A + EM++ G + + + L+ G+ E
Sbjct: 449 KGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQ 508
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A + F+ ME P TY ++ AY + + +V +++ MV+ PN
Sbjct: 509 ARSWFDEME--SVGCSPSVVTYTALLHAYLKTK---QVPQASDIFHRMVD--AGCAPNTI 561
Query: 322 TYALLVECFTKYCAVTEAIRHF-RALQNYEGGTKVLHNEGNFGDPLS-------LYLRAL 373
TY+ LV+ K +A + + + + + EG D ++ + L
Sbjct: 562 TYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGL 621
Query: 374 CREGRIIELLEALEAMAKD 392
C+ ++++ E L+ M+ +
Sbjct: 622 CKAHKVVDAQELLDVMSSN 640
>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Brachypodium distachyon]
Length = 726
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 114/268 (42%), Gaps = 24/268 (8%)
Query: 89 NDVIY------DMIAAGLSPGPRSFHGLVVAYTLNGDH---EGAMHSLKRELSAGVRPLH 139
N +IY DM ++G SP S+ L+ AYT +GD A L GV+P
Sbjct: 188 NQIIYARSLFDDMKSSGPSPNVYSYSVLMSAYT-HGDRLYLAEAFELLSEMEMKGVKPNA 246
Query: 140 ET----LIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195
T L L+R ++ +A+ + ++ N + +++ R +++A +V
Sbjct: 247 ATYGTYLYGLSR---TRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEV 303
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F KGGL Y +++ CK GD ++ EM G T ++ LL
Sbjct: 304 FDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCR 363
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G E+AF F +E E K D Y+ ++ + + ++ V +L MV H
Sbjct: 364 AGKVELAFELFRRLE--EQGFKHDHIVYSIILNGCCQ---HLNIEVVCDLWNDMV--HHN 416
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHF 343
P+ Y L+ F ++ +T+A+ F
Sbjct: 417 FVPDAYNYTSLIYAFCRHRNLTDALGVF 444
>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
Length = 1429
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 109/265 (41%), Gaps = 16/265 (6%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ V+ ++ +G +P ++++ L+ AY G +E A + G P E++ L
Sbjct: 770 KAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSPTVESINKLL 829
Query: 147 RLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
G + ++ ++ + + I + + L++++ R + + NK++ G
Sbjct: 830 HALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYL 889
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
T +Y +MI CK +A + EME A +N +L +
Sbjct: 890 PTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQV 949
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTR----AESYDRVQDVAELLGMMVEDHKRLQPNVK 321
++ ++ E ++PD TYN +I Y R E Y +Q + L L P +
Sbjct: 950 YQRIK--ESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNL---------GLDPKLD 998
Query: 322 TYALLVECFTKYCAVTEAIRHFRAL 346
TY L+ F K + +A + F L
Sbjct: 999 TYKSLISAFGKQKCLEQAEQLFEEL 1023
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG--IPEVAFATF 266
++Y+ M+ ++G S A E+ M G + FN L++ + G P +
Sbjct: 226 QVYNAMMGVYSRSGKFSKAQELLDAMRQRGCVPDLISFNTLINARLKSGGLTPNLVVELL 285
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+ + ++PD TYN ++ A +R + + V E + E H R QP++ TY +
Sbjct: 286 DMVR--NSGLRPDAITYNTLLSACSRDSNLEGAVKVFEDM----EAH-RCQPDLWTYNAM 338
Query: 327 VECFTKYCAVTEAIRHFRALQ 347
+ + + EA R F L+
Sbjct: 339 ISVYGRCGLAAEAERLFIELE 359
Score = 40.0 bits (92), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GLR Y+ +++ + + A+++ +MEA + +N ++S CG+ A
Sbjct: 292 GLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F +E PD TYN ++ A+ R + ++V++V + + M + T
Sbjct: 352 ERLFIELELKG--FSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEM-----T 404
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEG 351
Y ++ + K + A++ ++ ++ G
Sbjct: 405 YNTIIHMYGKQGQLDLALQLYKDMKGLSG 433
Score = 39.7 bits (91), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 6/194 (3%)
Query: 113 AYTLNGDHEGA---MHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
+Y+ +G H A + LK S R ++E LI L + G A +
Sbjct: 618 SYSSSGRHSEAFELLEFLKEHASGSKRLINEALIVLHCKVNNIGAALDEYLADPCVHGWC 677
Query: 170 YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229
+ + L+ V N++ +A++VF G ++ + M+ CK G A +
Sbjct: 678 FGGSTMYETLLHCCVANEHYAEASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQ 737
Query: 230 IAYEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288
+ + E G A + + ++ + + A + N+ + PD +T+N ++
Sbjct: 738 VVNQAETKGFHFACSPMYTDIIEAYGKLKLWQKAESVVGNLR--QSGRTPDLKTWNSLMS 795
Query: 289 AYTRAESYDRVQDV 302
AY Y+R + +
Sbjct: 796 AYAECGCYERARAI 809
Score = 39.3 bits (90), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 92/215 (42%), Gaps = 7/215 (3%)
Query: 92 IYDMI-AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
+ DM+ +GL P +++ L+ A + + + EGA+ + + +P T A+ ++G
Sbjct: 284 LLDMVRNSGLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYG 343
Query: 151 SKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
GLA + + +E + + L+ R + E +V+ + K G +
Sbjct: 344 RCGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEM 403
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEA-AGRMATTFHFNHLLSCQATCGIP-EVAFATFE 267
Y+ +I K G AL++ +M+ +GR + L+ E A E
Sbjct: 404 TYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSE 463
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
++ G +KP +TY+ +I Y +A + +D
Sbjct: 464 MLDVG---IKPTLQTYSALICGYAKAGKREEAEDT 495
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 109/265 (41%), Gaps = 33/265 (12%)
Query: 85 APRVND---VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET 141
A R++D ++++M GL +++ L+ + L GD A+ ++ +S+GV P T
Sbjct: 402 AKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVT 461
Query: 142 LIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
L G LE+ AM+K D+ DA++ F
Sbjct: 462 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDL------------------DASRPF----- 498
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G+ + Y+++I+ G A E+ EM G + T ++ +++ +
Sbjct: 499 NGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDE 558
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A F++M G PD T+N ++ Y +A RV D EL M + + +
Sbjct: 559 ATQMFDSM--GSKSFSPDVVTFNTLVSGYCKA---GRVDDGLELFCEM--GRRGIVADAI 611
Query: 322 TYALLVECFTKYCAVTEAIRHFRAL 346
TY L+ F K + A+ F+ +
Sbjct: 612 TYITLIHGFRKVGNINGALDIFQEM 636
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 11/228 (4%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
SF+ L+ + A+ + + G +P T L + ++ L++ M
Sbjct: 114 SFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM 173
Query: 166 EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
+ N + L+ L R + +A + R + GL+ Y ++ CK GD
Sbjct: 174 CRPNV---VTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTV 230
Query: 226 NALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
+AL + +ME + ++ ++ G A + M+ E + PD TYN
Sbjct: 231 SALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQ--EKGIFPDLFTYN 288
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
C+I + + + Q LL M+E +++ PNV TY+ L+ + K
Sbjct: 289 CMIDGFCSSGRWSEAQ---RLLQEMLE--RKINPNVVTYSALINAYVK 331
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 89/400 (22%), Positives = 146/400 (36%), Gaps = 80/400 (20%)
Query: 58 GSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLN 117
G VSA L L+ E M H + P V VIY I GL +
Sbjct: 227 GDTVSA----LNLLRKMEEMSHIK----PNV--VIYSAIIDGLWK--------------D 262
Query: 118 GDHEGAMHSLKRELS-AGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQ 174
G H A H+L E+ G+ P T + F S G ++ +L M KIN ++
Sbjct: 263 GRHSDA-HNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNV-V 320
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ L+ V+ + +A +++ G+ Y+ MI CK A + Y M
Sbjct: 321 TYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVM 380
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
G F FN L+ CG + T E E + DT TYN +I +
Sbjct: 381 ATKGCSPDVFTFNTLI--DGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVG 438
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL-------- 346
+ D+++ M+ + P++ T L++ + +A+ F+A+
Sbjct: 439 DLNAALDLSQ---QMISSG--VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLD 493
Query: 347 ------------QNYEGGTKVLHNEGNFGDPLSLY------------------LRALCRE 376
Q Y L NEG F + LY + LC++
Sbjct: 494 ASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQ 553
Query: 377 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
R+ E + ++M ++ P + + TLVS + +
Sbjct: 554 SRLDEATQMFDSMG--SKSFSPDVV----TFNTLVSGYCK 587
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ LVR +++ A +++ +GG+ ++M+ CK N + +ME G
Sbjct: 228 LLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKG 287
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
A +N L++ G+ E AF + + M+P TYN ++ + YDR
Sbjct: 288 VFADIVTYNTLINAYCREGLVEEAFQLLNS--FSSRGMEPGLLTYNAILYGLCKIGKYDR 345
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTY-ALLVE 328
+DV L+ M+ L PN TY LLVE
Sbjct: 346 AKDV--LIEML---QLGLTPNAATYNTLLVE 371
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 92/420 (21%), Positives = 164/420 (39%), Gaps = 40/420 (9%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R DV+ +M+ GL+P +++ L+V + A GV P + +L
Sbjct: 345 RAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLI 404
Query: 147 RLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
+ G + L ME+ I D + IL++ RN L DA K+ G
Sbjct: 405 GVLARNGHLYQALMHFREMERSGIVPD-NVIYTILIDGFCRNGALSDALKMRDEMLARGC 463
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
Y+ + CK ++A + EM G + + F L+ G + A
Sbjct: 464 FMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALN 523
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
FE M +KPD TYN +I + +A R + EL M+ K + P+ +Y
Sbjct: 524 LFEAMV--RTNLKPDKVTYNTLIDGFCKAGEMGRAK---ELWDDMIR--KDIIPDHISYG 576
Query: 325 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLE 384
++ F + EA+ Q E G + N +L ++ CR G + + E
Sbjct: 577 TVLNGFCSSGLLPEALN--LCDQMLEKGIR-----PNLVTCNTL-IKGYCRSGDMPKAYE 628
Query: 385 ALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEP---------LQEEAELGYEIDYIARYI 435
L M N +P S Y TL+ +++ + E + G + + I +
Sbjct: 629 YLSKMI-SNGIIPD-----SFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNL 682
Query: 436 SEGGLTGERK-----RWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLR 490
G E K + + + + ++PD G YS+ + Q +++ ++H ++L+
Sbjct: 683 ILNGFCAEGKMQEAEQVLRKMIEIGINPD--GATYSSLINGHVSQDNMKEAFRFHDEMLQ 740
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 20/245 (8%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK----RELSAGVR---PLHETLI 143
++ +M + G P ++ L+ + G + A+ LK +EL+ PL L
Sbjct: 299 LVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALC 358
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
RL + G+ + + +NY+ A L + N+ LE NK LRG G
Sbjct: 359 KEGRLDLAIGIMDYMISNGCLPDIVNYNTILAAL--CKNGNANQALEIFNK--LRGM--G 412
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
Y+ MI+ GD S AL + M + G +N L+SC G+ E A
Sbjct: 413 CPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAI 472
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
++ME + +P +YN V+ + R+ D + M+E K +PN TY
Sbjct: 473 GLLDDME--QSGFRPTVISYNIVLLGLCKVR---RIDDAIGMFAEMIE--KGCRPNETTY 525
Query: 324 ALLVE 328
LL+E
Sbjct: 526 ILLIE 530
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 104/254 (40%), Gaps = 20/254 (7%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+A GL P +++ ++ G E A + S G +P + L R F ++G
Sbjct: 232 EMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQG 291
Query: 154 LATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+G +++A M K+ Y I L+ L R +++A V + L
Sbjct: 292 KWDEGEKLVAEMFSRGCEPNKVTYSI------LISSLCRFGRIDEAISVLKVMIEKELTP 345
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
YD +I+ CK G A+ I M + G + ++N +L+ G A F
Sbjct: 346 DTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIF 405
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+ G P+ +YN +I A DR + + + M+ K + P+ TY L
Sbjct: 406 NKLR-GMG-CPPNVSSYNTMISALWSCG--DRSRALGMVPAMI---SKGVDPDEITYNSL 458
Query: 327 VECFTKYCAVTEAI 340
+ C + V EAI
Sbjct: 459 ISCLCRDGLVEEAI 472
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 17/203 (8%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
I++ L + L A KV + T Y ++I G + A+++ EM A
Sbjct: 177 IMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLAR 236
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G + + +N ++ G+ E A ++ KPD +YN +++A+ +D
Sbjct: 237 GLLPDMYTYNAIIRGMCKEGMVERAAELITSLT--SKGCKPDVISYNILLRAFLNQGKWD 294
Query: 298 RVQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 356
+ VAE+ + +PN TY++L+ ++ + EAI + + E L
Sbjct: 295 EGEKLVAEMFS------RGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKE-----L 343
Query: 357 HNEGNFGDPLSLYLRALCREGRI 379
+ DPL + ALC+EGR+
Sbjct: 344 TPDTYSYDPL---ISALCKEGRL 363
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L +N +A + ++ + G P S++ ++ A GD A+ + +S GV
Sbjct: 389 LAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGV 448
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANK 194
P T +L GL + + +L ME+ + ++ I++ L + + ++DA
Sbjct: 449 DPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIG 508
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIA 231
+F + G R + Y L+I AG + A+E+A
Sbjct: 509 MFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELA 545
>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
Group]
gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
Length = 796
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 133/305 (43%), Gaps = 43/305 (14%)
Query: 124 MHSLKRELSAGVRP----LHETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLI 178
+HSL+R GVRP + L AL+R L L++ ++ ++ + + +
Sbjct: 158 LHSLRRR--RGVRPSLQAANAVLSALSR--SPSTLPQASLDVFRSLIELRLHPNHYTFNL 213
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LV L DA GL Y+ ++ C+ G A + M+ G
Sbjct: 214 LVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDG 273
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENME-YGEDYMKPDTETYNCVIQAYTRAESYD 297
T +N L+S A G + A E+M YG +PD TYN + +A D
Sbjct: 274 IAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYG---FEPDLRTYNVLAVGLCQAGKVD 330
Query: 298 ---RVQDVAELLGMMVEDHKRLQPNVKTYALLVE-CFTKYCAVTEAIRHFRALQNYEG-- 351
R++D E L + P+V TY LV+ CF C+ ++A+R +++ +G
Sbjct: 331 EAFRLKDEMERLSTAL-------PDVVTYNTLVDACFKWRCS-SDALRLLEEMRD-KGVK 381
Query: 352 GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV 411
T V HN + +++LC+EG++ E L LE +A++ + P + Y TL+
Sbjct: 382 PTLVTHN---------IVVKSLCKEGKLEEALGKLEKIAEEG--LAPDVIT----YNTLI 426
Query: 412 SSWIE 416
++ +
Sbjct: 427 DAYCK 431
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 96/248 (38%), Gaps = 54/248 (21%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
I+V+ L + LE+A + A+ GL Y+ +I CKAG+ + A + EM
Sbjct: 389 IVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGK 448
Query: 238 GRMATTFHFNHLLSCQATCGI-------------PEVAFATFENMEYG------------ 272
G TF N +L C + P+ F E + YG
Sbjct: 449 GLKMDTFTLNTVL--YNLCKMKRYEDAEELLHSPPQRGFVPDE-VSYGTVMAAYFKEYNP 505
Query: 273 -----------EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
E + P TYN +I+ R E R+++ + L +VE K L P+
Sbjct: 506 EPALRLWDQMIERKLIPSISTYNTLIKGLCRME---RLKEAIDKLNELVE--KGLVPDET 560
Query: 322 TYALLVECFTKYCAVTEAIR-HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 380
TY +++ + K + A R H + ++N V N + LC G++
Sbjct: 561 TYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNT---------LMNGLCLHGKLD 611
Query: 381 ELLEALEA 388
+ L+ E+
Sbjct: 612 KALKLFES 619
Score = 40.0 bits (92), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 83/241 (34%), Gaps = 39/241 (16%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV +I L P +F+ LV + G A+ +L G+ P T L
Sbjct: 194 DVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAH 253
Query: 150 GSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
KG+ + +LA M++ Q + LV R +++ A KV G
Sbjct: 254 CRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDL 313
Query: 209 EIYDLMIAEDCKAGD------------------------------------HSNALEIAY 232
Y+++ C+AG S+AL +
Sbjct: 314 RTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLE 373
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
EM G T N ++ G E A E + E+ + PD TYN +I AY +
Sbjct: 374 EMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKI--AEEGLAPDVITYNTLIDAYCK 431
Query: 293 A 293
A
Sbjct: 432 A 432
>gi|414878623|tpg|DAA55754.1| TPA: hypothetical protein ZEAMMB73_281441 [Zea mays]
Length = 891
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 40/241 (16%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ +Y++ + CK G+ + A+++ EM A + H+ L++ G E A
Sbjct: 309 GVHLDGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENA 368
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ FE M +KPD TYN + Y+R +V D+ E MM + L+PN T
Sbjct: 369 WQVFEEMLKAN--IKPDVVTYNILASGYSRNGLVMKVFDILE--HMM---DQGLEPNSLT 421
Query: 323 YALLVECFTKYCAVTEAIRHFRALQ-------NYEGGTKV---LHN-------------- 358
Y + + F + ++EA F ++ N G+ V LH+
Sbjct: 422 YGIAIAGFCRGGNLSEAEVLFNIVEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFLRVA 481
Query: 359 -EGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
+GN D LS + LCR+ ++ E + M + N V P + Y L+S++
Sbjct: 482 KQGNMVDRLSCSKLINGLCRDEKVGEASTVCKMMLEKN--VVPDVI----SYSKLISAYC 535
Query: 416 E 416
+
Sbjct: 536 Q 536
>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Brachypodium distachyon]
Length = 570
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 7/150 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D + +M G SP ++ L+ AY + D + L S G RP T +
Sbjct: 285 DTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHAL 344
Query: 150 GSKGLATKGLEILAAMEKINYD--IRQAWLI--LVEELVRNKYLEDANKVFLRGAKGGLR 205
G G + L++ +K+ D + A ++ L R LEDAN VF + G+
Sbjct: 345 GKAGRTQEALDVF---DKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGIP 401
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
T I++ MI+ C NAL+I +ME
Sbjct: 402 PTVAIFNTMISAACDHSQAENALKILVKME 431
>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 22/228 (9%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSA-GVRPLHETLIALARLFGSKGLATKGLEILAA 164
+++ ++ N HEG + L RE+ A G RP TL ++ G EI +
Sbjct: 327 TWNAVITGLVQNNRHEGVL-DLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSY 385
Query: 165 MEKINYDIRQAWLI--LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAG 222
KI Y R ++ +++ ++ YL A +VF + L I+ +I+ G
Sbjct: 386 AIKIGYH-RNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLV----IWTAIISAYAVHG 440
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDT 280
D + AL + +EM G F +L+ A CG+ + A+ FE+M +YG ++P
Sbjct: 441 DANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFESMFKKYG---IQPLV 497
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
E Y CV+ A +A R+ + E + M ++P+ K + L+
Sbjct: 498 EHYACVVGALGKAR---RLSEAKEFVSKM-----PIEPSAKVWGALLH 537
>gi|222636729|gb|EEE66861.1| hypothetical protein OsJ_23658 [Oryza sativa Japonica Group]
Length = 728
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 10/198 (5%)
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
+V Y NG E A+ +R L GV TL ++A + G+ +G ++ +EK+
Sbjct: 319 MVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLW 378
Query: 170 YDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228
Y + +V+ + LEDA +F R + ++ M+ G A+
Sbjct: 379 YKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNI----AVWTSMLCSYASHGQGRIAI 434
Query: 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNCV 286
E+ M A +LS + G+ F+ M EYG + P E YNC+
Sbjct: 435 ELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYG---IVPSIEHYNCI 491
Query: 287 IQAYTRAESYDRVQDVAE 304
+ Y R+ D+ ++ E
Sbjct: 492 VDLYGRSGLLDKAKNFIE 509
>gi|297843920|ref|XP_002889841.1| hypothetical protein ARALYDRAFT_888388 [Arabidopsis lyrata subsp.
lyrata]
gi|297335683|gb|EFH66100.1| hypothetical protein ARALYDRAFT_888388 [Arabidopsis lyrata subsp.
lyrata]
Length = 665
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 3/214 (1%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
A N + I M A G SP + L+ +Y+ GD++ A + S G+ P
Sbjct: 249 ASNGRCEEAENFIQQMKAEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNK 308
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLR 198
+ L +++ GL + E+L+ +E Y + + +L++ L + LE+A +F
Sbjct: 309 VMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIFDD 368
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G+++ +MI+ C++ A E++ + E N +L G
Sbjct: 369 MKGKGVKSDGYANSIMISALCRSKRFEEAKELSRDSETTYEKCDLVMLNTMLCAYCRAGE 428
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
E + M+ E + PD T++ +I+ + +
Sbjct: 429 MESVMRMMKKMD--EQAIIPDYNTFHILIKYFIK 460
>gi|357442727|ref|XP_003591641.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|92882355|gb|ABE86686.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355480689|gb|AES61892.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 827
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 100/260 (38%), Gaps = 18/260 (6%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R R+ + + M A G+ ++ L+ Y+ G E A+ L+ L G+ P
Sbjct: 168 GRAREWALLEGLWNQMNARGIVATNSTYGTLIDVYSKGGLREDALFWLETMLEHGIEPDE 227
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
T++ + +L+ G K E + W + NK++ DA + R
Sbjct: 228 VTMVIVVQLYKKAGEFQKAEEFF-----------RKWSLGEPLRPSNKHMMDAPESVERA 276
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
Y+ +I KAG H A E +M G TT FN ++ G
Sbjct: 277 LFSNASFGSHTYNTLIDTYGKAGQHKEASETFAKMLKQGIPPTTVTFNTMIHICGNHGRL 336
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
E + M GE PDT TYN +I +T+ D + M E + L+P+
Sbjct: 337 EEVSSLLRKM--GELRCSPDTRTYNTLISLHTKHNDIDM---ATKYFKRMKESY--LEPD 389
Query: 320 VKTYALLVECFTKYCAVTEA 339
+Y L+ ++ V EA
Sbjct: 390 PVSYRTLLYAYSIRKMVCEA 409
>gi|147784775|emb|CAN64008.1| hypothetical protein VITISV_000279 [Vitis vinifera]
Length = 549
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 90/187 (48%), Gaps = 9/187 (4%)
Query: 142 LIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
+ +L R G+ +A + L+ + E+ Y I+ + ++ L R+K ++ A ++ L+ +
Sbjct: 318 IASLCREDGTISMAVEMLDDFSG-EECKYAIK-PYTAVIRGLCRSKDVDGAKRLLLKMIE 375
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G + +++ +I KAG+ A+++ ME G + ++ ++S A G+ E
Sbjct: 376 AGPPPGNAVFNFVINGLSKAGEMEEAMKMMKLMETRGLKPDVYTYSVIMSGYAHGGMMEE 435
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A + + P TY+ +I+ Y + E +D+ ELLG M E +QPN
Sbjct: 436 ACRVLSEAKRNHSKLSP--VTYHTLIRGYCKLEQFDK---AVELLGEMKEHG--VQPNTD 488
Query: 322 TYALLVE 328
Y L++
Sbjct: 489 EYNKLIQ 495
>gi|357445509|ref|XP_003593032.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482080|gb|AES63283.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 627
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 25/244 (10%)
Query: 75 ELMQHARNRDAPRVNDVIYDMIAA---------------------GLSPGPRSFHGLVVA 113
EL+Q ++ + R++DVIY I A G SP + L+ A
Sbjct: 195 ELIQELQD-NKLRMDDVIYGAILAVCASNGKWEEAEYYFNQMKSEGRSPNVYHYSSLLNA 253
Query: 114 YTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY-DI 172
Y+ GD A ++ S G+ P L L +++ GL K E+LA +E + Y +
Sbjct: 254 YSACGDFTKADALIQDMESEGLAPNKVILTTLLKVYVRGGLFEKSRELLAKLESLGYAED 313
Query: 173 RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
+ +L++ L + + +A +F K + + + ++I+ C+A A ++A
Sbjct: 314 EMPYCVLMDGLAKARQTHEAKIIFDEMMKKHVMSDGYAHSIIISAFCRAKLFQEAKQLAK 373
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+ + N +L G E T M+ E + PD T+N +I+ + R
Sbjct: 374 DFQTTFDKYDVVIMNSMLCAFCRAGEMESVMETLRKMD--ELAISPDYNTFNILIKYFCR 431
Query: 293 AESY 296
Y
Sbjct: 432 KNMY 435
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 115/259 (44%), Gaps = 10/259 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ DM + + P +F+ L+ + G + A K ++ G+ P T +L +
Sbjct: 262 LLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYC 321
Query: 151 SKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+ ++ +L M + N DI + L++ + K +++ K+F + +K GL A
Sbjct: 322 MQNRLSEANNMLDLMVRNNCSPDI-VTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANT 380
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y +++ C++G A E+ EM + G + + LL G E A FE+
Sbjct: 381 VTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFED 440
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
++ + M D Y +I+ + +V+D L + K ++PNV TY +++
Sbjct: 441 LQ--KSKMNLDIVMYTIIIEGMCKG---GKVEDAWNLFCSL--PCKGVKPNVMTYTVMIS 493
Query: 329 CFTKYCAVTEAIRHFRALQ 347
K +++EA R ++
Sbjct: 494 GLCKKGSLSEANILLRKME 512
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L + +A + R + G + Y+ ++ CK+GD S AL++ +M+
Sbjct: 141 LINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERN 200
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
A F ++ ++ G + A + F+ ME +K TYN ++ +A ++
Sbjct: 201 VKADVFTYSTIIDSLCRDGCIDAAISLFKEME--TKGIKSSLVTYNSLVGGLCKAGKWN- 257
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH- 357
D +LL M +++ PNV T+ +L++ F K + EA ++ E TK +
Sbjct: 258 --DGVQLLKDMTS--RKIIPNVITFNVLIDVFVKEGKLQEANELYK-----EMITKGISP 308
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393
N + + Y C + R+ E L+ M ++N
Sbjct: 309 NTITYNSLMDGY----CMQNRLSEANNMLDLMVRNN 340
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL ++ LV + +G E A + +S GV P T L G K
Sbjct: 375 GLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKA 434
Query: 159 LEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
LEI ++K +N DI + I++E + + +EDA +F G++ Y +MI+
Sbjct: 435 LEIFEDLQKSKMNLDIVM-YTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 493
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
CK G S A + +ME G +N L+
Sbjct: 494 GLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLI 527
>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
Length = 1010
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+M AG T F +N ++ C G E A FE M++ + PDT TYN +I + +
Sbjct: 85 DMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG--LIPDTVTYNSMIDGFGK 142
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
D E + M +P+V TY L+ CF K+ + + + FR ++
Sbjct: 143 VGRLDDTVCFFEEMKDMC-----CEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLK 197
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRI 379
V+ S + A C+EG +
Sbjct: 198 PNVV--------SYSTLVDAFCKEGMM 216
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Query: 191 DANKVFLRGAKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
D K F + G G + T Y++MI CK GD A + EM+ G + T +N +
Sbjct: 77 DGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSM 136
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G + FE M+ + +PD TYN +I + + + ++ E M
Sbjct: 137 IDGFGKVGRLDDTVCFFEEMK--DMCCEPDVITYNALINCFCK---FGKLPKGLEFFREM 191
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+ L+PNV +Y+ LV+ F K + +AI+ +
Sbjct: 192 KRN--GLKPNVVSYSTLVDAFCKEGMMQQAIKFY 223
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 2/147 (1%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM GL P ++ L+ AY G+ A L GV T AL
Sbjct: 225 DMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWE 284
Query: 154 LATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKG-GLRATDEIY 211
T+GL +L M +++ + + +L++ L +NK + A F R + GL+A IY
Sbjct: 285 NPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIY 344
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAG 238
MI CK A + +M G
Sbjct: 345 TAMIDGLCKGNQVEAATTLFEQMAQKG 371
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 16/258 (6%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G+ P ++ L+ + G + AM + AG +P T AL ++ G++G
Sbjct: 387 MVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRG- 445
Query: 155 ATKGLEILAAMEKINY-----DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+E++ E+I DI W L+ +N + + VF + G +
Sbjct: 446 --NFVEMMKVFEEIKICECVPDI-VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERD 502
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ +I+ + G A+ I M AG +N +L+ A G+ E + M
Sbjct: 503 TFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEM 562
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ G KP+ TY ++ AY + +R+ +AE + + ++P LV
Sbjct: 563 KDGR--CKPNELTYCSLLHAYANGKEVERMSALAEEIYSGI-----IEPQAVLLKTLVLV 615
Query: 330 FTKYCAVTEAIRHFRALQ 347
++K +TE R F L+
Sbjct: 616 YSKSDLLTETERAFLELR 633
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 110/260 (42%), Gaps = 11/260 (4%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
+++D+ G+ ++ L+ AY NG + A+ K+ G RP T + ++G
Sbjct: 207 LLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYG 266
Query: 151 SKGLA-TKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G+ +K ++ +M+ + D+ + L+ R E+A +VF G
Sbjct: 267 KMGMPWSKIAGLVDSMKSSGVAPDL-YTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPD 325
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ ++ K+ A+E+ EMEA+G + +N L+S A G+ + A
Sbjct: 326 KVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKS 385
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M + +KPD TY ++ + + D V E + + QPN+ T+ L+
Sbjct: 386 QMV--KKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRV-----AGCQPNICTFNALI 438
Query: 328 ECFTKYCAVTEAIRHFRALQ 347
+ E ++ F ++
Sbjct: 439 KMHGNRGNFVEMMKVFEEIK 458
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 116/281 (41%), Gaps = 51/281 (18%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V +M AAG SP +++ L+ Y + AM LK ++G P T +L +
Sbjct: 312 EVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAY 371
Query: 150 GSKGLATKGLEILAAMEK--INYDIRQAWLIL--VEELVRNKYLEDANKVF--------- 196
GL + +E+ + M K I D+ +L E+ ++ Y A KVF
Sbjct: 372 ARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDY---AMKVFEEMRVAGCQ 428
Query: 197 -----------LRGAKGG----LRATDEI-----------YDLMIAEDCKAGDHSNALEI 230
+ G +G ++ +EI ++ ++A + G S +
Sbjct: 429 PNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGV 488
Query: 231 AYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 290
EM+ AG + FN L+S + CG + A A + M + + PD TYN V+ A
Sbjct: 489 FKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRML--DAGVTPDLSTYNAVLAAL 546
Query: 291 TRAESYDRVQDV-AELLGMMVEDHKRLQPNVKTYALLVECF 330
R +++ + V AE+ R +PN TY L+ +
Sbjct: 547 ARGGLWEQSEKVLAEM------KDGRCKPNELTYCSLLHAY 581
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 87/205 (42%), Gaps = 3/205 (1%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
++ ++ M ++G++P +++ L+ + +E A + +AG P T AL
Sbjct: 274 KIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALL 333
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
++G + +E+L ME + + L+ R+ L++A ++ + K G++
Sbjct: 334 DVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIK 393
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y +++ K G A+++ EM AG FN L+ G
Sbjct: 394 PDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKV 453
Query: 266 FENMEYGEDYMKPDTETYNCVIQAY 290
FE ++ E PD T+N ++ +
Sbjct: 454 FEEIKICE--CVPDIVTWNTLLAVF 476
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 136/334 (40%), Gaps = 60/334 (17%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ DV+ DM A G SP +++ ++ Y G A LK ++ + P
Sbjct: 247 KAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHP--------- 297
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+I ++ IL++ R++ + A KVF + GL+
Sbjct: 298 -------------------NEITFN------ILIDGFCRDENVTAAKKVFEEMQRQGLQP 332
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y+ +I C G AL + +M G +N L++ + + A
Sbjct: 333 NVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREML 392
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+++ G+ + P+ T+N +I AY +A R+ D L MM++ + PNV TY L
Sbjct: 393 DDI--GKRGLAPNVITFNTLIDAYGKA---GRMDDAFLLRSMMLDTG--VCPNVSTYNCL 445
Query: 327 VECFTKYCAVTEAIRHFRALQ-NYEGGTKVLHNEGNFGDPLSLYLRALCREG---RIIEL 382
+ F + V EA + + ++ N V +N + + ALC++G + + L
Sbjct: 446 IVGFCREGNVKEARKLAKEMEGNGLKADLVTYN---------ILVDALCKKGETRKAVRL 496
Query: 383 LEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
L+ + M K + RA I++ Y L+ +
Sbjct: 497 LDEMTLMEKKGR----RANIVT--YNVLIKGFCN 524
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 102/255 (40%), Gaps = 19/255 (7%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R+ + V +M GL P +++ L+ NG + A+ + G++P
Sbjct: 310 CRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNV 369
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDA 192
T AL F K + + E+L + K I ++ L++ + ++DA
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN------TLIDAYGKAGRMDDA 423
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
+ G+ Y+ +I C+ G+ A ++A EME G A +N L+
Sbjct: 424 FLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDA 483
Query: 253 QATCGIPEVAFATFENMEYGEDY-MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
G A + M E + + TYN +I+ + ++++ LL M+E
Sbjct: 484 LCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNK---GKLEEANRLLNEMLE 540
Query: 312 DHKRLQPNVKTYALL 326
K L PN TY +L
Sbjct: 541 --KGLIPNRTTYDIL 553
>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1429
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 108/267 (40%), Gaps = 17/267 (6%)
Query: 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAA 164
+ ++ L+ AY +G +E A + G P +++ L + G + +
Sbjct: 771 KVWNALIQAYAASGCYEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQE 830
Query: 165 MEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD 223
++ + + I + + L++++ R + +A K++ G T +Y +MI CK
Sbjct: 831 IQDMGFQISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKR 890
Query: 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY 283
+ + EME AG +N +L + GI + ED ++PD +TY
Sbjct: 891 VRDVEAMVTEMEEAGFRPDLSIWNSML--RLYTGIDDFRKTVQIYQRIKEDGLQPDEDTY 948
Query: 284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
N +I Y R R ++ L+ M L+P + TY L+ F K V +A F
Sbjct: 949 NTLIVMYCRDH---RPEEGCSLMHEM--RRIGLEPKLDTYKSLIAAFGKQQLVVDAEELF 1003
Query: 344 RALQN---------YEGGTKVLHNEGN 361
L + Y K+ N GN
Sbjct: 1004 EELLSKGSKLDRSFYHIMMKIYRNSGN 1030
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/251 (19%), Positives = 105/251 (41%), Gaps = 10/251 (3%)
Query: 98 AGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK 157
+GL P +++ L+ A + + E A+ + +P T A+ ++G G + K
Sbjct: 276 SGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGK 335
Query: 158 GLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
++ +E Y + L+ R ++ ++ + G + Y+ +I
Sbjct: 336 AEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIH 395
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL-SCQATCGIPEVAFATFENMEYGEDY 275
K G H AL++ +M+ +GR + L+ S + E A E + G
Sbjct: 396 MYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIG--- 452
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
+KP TY+ +I Y RA ++ + + ++P+ Y+++++ F ++
Sbjct: 453 VKPTLRTYSALICGYARAGQRLEAEETFDCM-----RRSGIRPDQLAYSVMLDVFLRFDE 507
Query: 336 VTEAIRHFRAL 346
T+A+ +R +
Sbjct: 508 ATKAMMLYREM 518
Score = 42.7 bits (99), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ GLR Y+ +I+ + + A+++ +MEA + +N ++S CG
Sbjct: 275 RSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSG 334
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303
A F+ +E + Y PD TYN ++ A+ R + D+V+++
Sbjct: 335 KAEQLFKELE-SKGYF-PDAVTYNSLLYAFAREGNVDKVKEIC 375
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 129/303 (42%), Gaps = 19/303 (6%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L + R DA R+ + DMI ++P +F L+ A+ G A + +
Sbjct: 301 LCNYGRWSDASRL---LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 357
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANK 194
P T +L F + ++ M K + + L++ + K +E+ +
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 417
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
VF ++ GL Y+++I +AGD A EI EM + G +N LL
Sbjct: 418 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 477
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G E A FE ++ + M+P TYN +I+ +A +V+D +L + K
Sbjct: 478 KNGKLEKAMVVFEYLQRSK--MEPTIYTYNIMIEGMCKA---GKVEDGWDLFCNL--SLK 530
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 374
++P+V Y ++ F + + EA F+ ++ E GT L N G + + +RA
Sbjct: 531 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMK--EDGT--LPNSGCY----NTLIRARL 582
Query: 375 REG 377
R+G
Sbjct: 583 RDG 585
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 124/350 (35%), Gaps = 86/350 (24%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M G P +F+ L+ L+ AM + R ++ G +P L
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQP---------------DL 221
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
T G+ + ++ + D+ L +E+ G L IY+ +
Sbjct: 222 VTYGVVVNGLCKRGDTDLAFNLLNKMEQ-------------------GKLEPGVLIYNTI 262
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I CK +AL + EME G ++ L+SC G A +M E
Sbjct: 263 IDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI--ER 320
Query: 275 YMKPDTETYNCVIQAYTR------AES--------------------------YDRVQDV 302
+ PD T++ +I A+ + AE +DR+ +
Sbjct: 321 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 380
Query: 303 AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL-QNYEGGTKVLHNEGN 361
++ MV H P+V TY L++ F KY V E + FR + Q G V +N
Sbjct: 381 KQMFEFMVSKH--CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN--- 435
Query: 362 FGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV 411
+ ++ L + G E + M D VPP M Y TL+
Sbjct: 436 ------ILIQGLFQAGDCDMAQEIFKEMVSDG--VPPNIM----TYNTLL 473
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 10/252 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P +F LV + A+ ++R + G +P T A+ +G
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220
Query: 155 ATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
L +L MEK I D+ + +++ L + ++++DA +F G+R Y
Sbjct: 221 PDLALNLLNKMEKGKIEADV-VIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I+ C G S+A + +M FN L+ A G A F+ M
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMI-- 337
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ + P+ TYN +I + +DR+ + ++ +MV K P+V TY L+ F K
Sbjct: 338 QRSIDPNIVTYNSLINGFCM---HDRLDEAQQIFTLMVS--KDCLPDVVTYNTLINGFCK 392
Query: 333 YCAVTEAIRHFR 344
V + + FR
Sbjct: 393 AKKVVDGMELFR 404
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ L +N LE A VF K + Y++M CKAG + ++ + G
Sbjct: 456 LLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG 515
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+N ++S G+ E A+ F M+ ED PD+ TYN +I+A+ R
Sbjct: 516 VKPDVIAYNTMISGFCKKGLKEEAYTLFIKMK--EDGPLPDSGTYNTLIRAHLR 567
Score = 42.7 bits (99), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 83/191 (43%), Gaps = 15/191 (7%)
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
KG + A IY +I CK +AL + EM+ G F ++ L+SC G
Sbjct: 233 KGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWS 292
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
A +M E + P+ T+N +I A+ + ++ + +L M++ + + PN+
Sbjct: 293 DASRLLSDML--ERKINPNVVTFNSLIDAFAKE---GKLIEAEKLFDEMIQ--RSIDPNI 345
Query: 321 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 380
TY L+ F + + EA + F + + + V+ + + C+ +++
Sbjct: 346 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVV--------TYNTLINGFCKAKKVV 397
Query: 381 ELLEALEAMAK 391
+ +E M++
Sbjct: 398 DGMELFRDMSR 408
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 117/325 (36%), Gaps = 84/325 (25%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
++ DM AG P +++ LV A+ G+ +GA + L G++P T F
Sbjct: 171 SILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVT-------F 223
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
S +V + + +EDA KVF + GL
Sbjct: 224 NS---------------------------MVNGMCKAGKMEDARKVFDEMMREGLAPDGV 256
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG------------ 257
Y+ ++ CKAG AL + EM G M F L+ G
Sbjct: 257 SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQM 316
Query: 258 ------IPEVAFAT----FENMEYGEDYM-----------KPDTETYNCVIQAYTRAESY 296
+ EV F F + +D + KP YN +I Y
Sbjct: 317 RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMV--- 373
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 356
R+ + ELL M + K L+P+V TY+ ++ + K C A +E ++L
Sbjct: 374 GRMDEARELLHEM--EAKGLKPDVVTYSTIISAYCKNCDTHSA---------FELNQQML 422
Query: 357 HNEGNFGDPL--SLYLRALCREGRI 379
+G D + S +R LC E R+
Sbjct: 423 E-KGVLPDAITYSSLIRVLCEEKRL 446
>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 122/315 (38%), Gaps = 44/315 (13%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ +M++ G+SP ++ L+ + + G + A+ + + ++P T L F
Sbjct: 216 DLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGF 275
Query: 150 GSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+G + A M K + Y+ LV+E+ A +F A+G
Sbjct: 276 CKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEV------NTAKSIFNTMAQG 329
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ Y+++I CK A+ + EM + +N L+ + G A
Sbjct: 330 GVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYA 389
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ M + + P+ TYN +I A + D+ A L +D + +QP++ T
Sbjct: 390 LQLVDQMH--DRGVPPNILTYNSIIDALFKTHQVDK----AIALITKFKD-QGIQPSMYT 442
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL 382
Y +L++ C V G + N N + + C++G E
Sbjct: 443 YTILID---GLCKVE--------------GYDITVNTYN------VMIHGFCKKGLFDEA 479
Query: 383 LEALEAMAKDNQPVP 397
L L M KD+ +P
Sbjct: 480 LSLLSKM-KDSSCIP 493
>gi|242061542|ref|XP_002452060.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
gi|241931891|gb|EES05036.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
Length = 674
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 117/298 (39%), Gaps = 47/298 (15%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R+ D + + + ++P +++ ++ E A ++ + P T
Sbjct: 202 RLTDALRLIASMPVAPDTYTYNTVLKGLCFAKQWEEAEELMREMIRNNCHPNEVTFATQI 261
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLI---LVEELVRNKYLEDA----------- 192
R F GL + +E+L M K Y +I LV + ++DA
Sbjct: 262 RAFCQNGLLDRAVELLEQMPK--YGCMPDVVIYSTLVNGFSEHGRVDDALKLLSTMLCRP 319
Query: 193 NKVFLRGAKGGLRAT---DEIYDL---MIAEDCKAGDHS---------------NALEIA 231
N V A GL DE+ +L M+ +DC D + A+E+
Sbjct: 320 NTVCYNAALKGLCIAGRWDEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAIEVL 379
Query: 232 YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 291
+M+ G M +N ++SC + + A +M KPDT ++N V++
Sbjct: 380 EQMQKYGYMPDVVSYNTIISCFSEQACADDALKLLNSM-----LCKPDTISFNAVLKCLC 434
Query: 292 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
RAE R D AEL+ M+++ N T+ +L++ + V +AI F + Y
Sbjct: 435 RAE---RWYDAAELMAKMLKED--CHTNEMTFNILIDSLCQNGQVKDAIEMFELMPKY 487
>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 132/344 (38%), Gaps = 44/344 (12%)
Query: 16 LSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHG----------DSLLSTNGSVVSAAE 65
+S Q + P+ SPE+K R Q+ + K G D L V++
Sbjct: 85 ISNKQVEIRPVFDRFLSPEEKLRGVFVQKIKGKSGIERALTECSVDLSLDVVAEVLNRGN 144
Query: 66 QG---LRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEG 122
G + + F + Q ++D N VI + G R F +V +
Sbjct: 145 LGGEAMIMFFNWAIKQPMISKDVDSYNVVIRAL-------GRRKFIDFMVKF-------- 189
Query: 123 AMHSLKRELSAGVRPLHETL-IALARLFGSKGLATKGLEILAAMEK-INYDIRQAWL-IL 179
+H L+ E GV ET I + L ++ + K +++ +E+ ++ L +L
Sbjct: 190 -LHELRVE---GVSMNSETFSIVIDSLVRARRV-YKAIQMFGNLEEEFGFERDAESLNVL 244
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR 239
++ L R ++ AN F KG + Y+++I K G S + EME G
Sbjct: 245 LQCLCRRSHVGAANSYF-NSVKGKIPFNCMTYNVIIGGWSKFGRVSEMQRVFEEMEEDGF 303
Query: 240 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 299
F++LL G E A F +ME E PDT YN +I + ++D
Sbjct: 304 SPDCLSFSYLLEGLGRAGKIEDAVMIFGSME--EKGCVPDTNVYNAMISNFISVGNFDEC 361
Query: 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
L K PN+ TY ++ K V +A+ F
Sbjct: 362 MKYYRCL-----LSKNCDPNIDTYTRMISGLIKASKVADALEMF 400
>gi|242077154|ref|XP_002448513.1| hypothetical protein SORBIDRAFT_06g028250 [Sorghum bicolor]
gi|241939696|gb|EES12841.1| hypothetical protein SORBIDRAFT_06g028250 [Sorghum bicolor]
Length = 718
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 106/259 (40%), Gaps = 13/259 (5%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT-KG 158
L+ P++F+ +V A +G E A + KR A R L K
Sbjct: 120 LAAFPKTFNAVVSALATHGLLEPAFYCFKRLRDASFRGLETPAYNALLSLLLARGLAFKA 179
Query: 159 LEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVF--LRGAKGGLRATDEIYDLMI 215
E+L M + ++ + + V L R ++ A K+F ++ +G RA +Y +M+
Sbjct: 180 FEVLDEMATSGCALDESTYELAVPALARAGRIDAARKMFDEMKQREGIGRAPVGVYSVMV 239
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
KAG A+ + EM A G +T ++ G + +E M G
Sbjct: 240 DVLAKAGRLDAAMGMYREMVAVGHRVSTAVSTAMVEALVRSGKLDAGMELWEEMRRGG-- 297
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
++P Y V++A R+ R+ A+L G M + P TYA LVE
Sbjct: 298 LRPSFGLYTMVVEANARS---GRLDMAAKLFGDM--EKSGFFPTPATYACLVEMHASAGQ 352
Query: 336 VTEAIRHFRALQNYEGGTK 354
V A+R + ++ N GT+
Sbjct: 353 VDAAMRLYHSMAN--AGTR 369
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 16/258 (6%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G+ P ++ L+ + G + AM + AG +P T AL ++ G++G
Sbjct: 387 MVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRG- 445
Query: 155 ATKGLEILAAMEKINY-----DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+E++ E+I DI W L+ +N + + VF + G +
Sbjct: 446 --NFVEMMKVFEEIKICECVPDI-VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERD 502
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ +I+ + G A+ I M AG +N +L+ A G+ E + M
Sbjct: 503 TFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEM 562
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ G KP+ TY ++ AY + +R+ +AE + + ++P LV
Sbjct: 563 KDGR--CKPNELTYCSLLHAYANGKEVERMSALAEEIYSGI-----IEPQAVLLKTLVLV 615
Query: 330 FTKYCAVTEAIRHFRALQ 347
++K +TE R F L+
Sbjct: 616 YSKSDLLTETERAFLELR 633
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 110/260 (42%), Gaps = 11/260 (4%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
+++D+ G+ ++ L+ AY NG + A+ K+ G RP T + ++G
Sbjct: 207 LLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYG 266
Query: 151 SKGLA-TKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G+ +K ++ +M+ + D+ + L+ R E+A +VF G
Sbjct: 267 KMGMPWSKIAGLVDSMKSSGVAPDL-YTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPD 325
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ ++ K+ A+E+ EMEA+G + +N L+S A G+ + A
Sbjct: 326 KVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKS 385
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M + +KPD TY ++ + + D V E + + QPN+ T+ L+
Sbjct: 386 QMV--KKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRV-----AGCQPNICTFNALI 438
Query: 328 ECFTKYCAVTEAIRHFRALQ 347
+ E ++ F ++
Sbjct: 439 KMHGNRGNFVEMMKVFEEIK 458
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 116/281 (41%), Gaps = 51/281 (18%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V +M AAG SP +++ L+ Y + AM LK ++G P T +L +
Sbjct: 312 EVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAY 371
Query: 150 GSKGLATKGLEILAAMEK--INYDIRQAWLIL--VEELVRNKYLEDANKVF--------- 196
GL + +E+ + M K I D+ +L E+ ++ Y A KVF
Sbjct: 372 ARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDY---AMKVFEEMRVAGCQ 428
Query: 197 -----------LRGAKGG----LRATDEI-----------YDLMIAEDCKAGDHSNALEI 230
+ G +G ++ +EI ++ ++A + G S +
Sbjct: 429 PNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGV 488
Query: 231 AYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 290
EM+ AG + FN L+S + CG + A A + M + + PD TYN V+ A
Sbjct: 489 FKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRML--DAGVTPDLSTYNAVLAAL 546
Query: 291 TRAESYDRVQDV-AELLGMMVEDHKRLQPNVKTYALLVECF 330
R +++ + V AE+ R +PN TY L+ +
Sbjct: 547 ARGGLWEQSEKVLAEM------KDGRCKPNELTYCSLLHAY 581
Score = 43.1 bits (100), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 87/205 (42%), Gaps = 3/205 (1%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
++ ++ M ++G++P +++ L+ + +E A + +AG P T AL
Sbjct: 274 KIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALL 333
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
++G + +E+L ME + + L+ R+ L++A ++ + K G++
Sbjct: 334 DVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIK 393
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y +++ K G A+++ EM AG FN L+ G
Sbjct: 394 PDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKV 453
Query: 266 FENMEYGEDYMKPDTETYNCVIQAY 290
FE ++ E PD T+N ++ +
Sbjct: 454 FEEIKICE--CVPDIVTWNTLLAVF 476
>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Brachypodium distachyon]
Length = 801
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 108/257 (42%), Gaps = 22/257 (8%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
DA + D + D AAGL +F LV+A++ G H+ A+ + R RP
Sbjct: 124 DAVAMFDALADARAAGLPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYN 183
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQA-------WLILVEELVRNKYLEDANKVF 196
A+ ++ +G+ IL A+ N + +++L++ L + DA K+F
Sbjct: 184 AVFQVLVDRGV------ILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMF 237
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ G+ +IY ++++ C G +A + M+ G + LS
Sbjct: 238 DEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKA 297
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR-VQDVAELLGMMVEDHKR 315
G + AF FE ++ G Y+C+I +A +D + E+LG K
Sbjct: 298 GRVDEAFHRFELLQDGG--FTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLG------KS 349
Query: 316 LQPNVKTYALLVECFTK 332
+ P++ Y +L+ F +
Sbjct: 350 ISPDITLYTILIRRFAE 366
>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 646
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 112/308 (36%), Gaps = 56/308 (18%)
Query: 87 RVNDVIY---DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
RV++ ++ +M A G P P +F+ L+ A + NGD A + G P T
Sbjct: 224 RVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYN 283
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKG 202
L KG K L +L M Q + ++ LV+ + ED + + +
Sbjct: 284 TLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEER 343
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G +A + IY +I+ K G NA+ + EM G
Sbjct: 344 GQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKG------------------------ 379
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVEDHKRLQPNVK 321
KP+ Y I R E D +D+ E+L K PN
Sbjct: 380 -------------CKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLS------KGFLPNAF 420
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381
TY+ L++ F K +AI ++ + + + V+ S+ L LC GR+ E
Sbjct: 421 TYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVC--------CSVLLNGLCESGRLRE 472
Query: 382 LLEALEAM 389
L M
Sbjct: 473 ALTVWTHM 480
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 20/245 (8%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK----RELSAGVR---PLHETLI 143
++ +M + G P ++ L+ + G + A+ LK +EL+ PL L
Sbjct: 309 LVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALC 368
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
RL + G+ + + +NY+ A L + N+ LE NK LRG G
Sbjct: 369 KEGRLDLAIGIMDYMISNGCLPDIVNYNTILAAL--CKNGNANQALEIFNK--LRGM--G 422
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
Y+ MI+ GD S AL + M + G +N L+SC G+ E A
Sbjct: 423 CPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAI 482
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
++ME + +P +YN V+ + R+ D + M+E K +PN TY
Sbjct: 483 GLLDDME--QSGFRPTVISYNIVLLGLCKVR---RIDDAIGMFAEMIE--KGCRPNETTY 535
Query: 324 ALLVE 328
LL+E
Sbjct: 536 ILLIE 540
Score = 46.2 bits (108), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 20/254 (7%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+A GL P +++ ++ G E A + S G P + L R F ++G
Sbjct: 242 EMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQG 301
Query: 154 LATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+G +++A M K+ Y I L+ L R +++A V + L
Sbjct: 302 KWDEGEKLVAEMFSRGCEPNKVTYSI------LISSLCRFGRIDEAISVLKVMIEKELTP 355
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
YD +I+ CK G A+ I M + G + ++N +L+ G A F
Sbjct: 356 DTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIF 415
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+ G P+ +YN +I A DR + + + M+ K + P+ TY L
Sbjct: 416 NKLR-GMG-CPPNVSSYNTMISALWSCG--DRSRALGMVPAMI---SKGIDPDEITYNSL 468
Query: 327 VECFTKYCAVTEAI 340
+ C + V EAI
Sbjct: 469 ISCLCRDGLVEEAI 482
Score = 42.7 bits (99), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y ++I G + A+++ EM A G + + +N ++ G+ E A ++
Sbjct: 220 YTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLT 279
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQD-VAELLGMMVEDHKRLQPNVKTYALLVEC 329
+PD +YN +++A+ +D + VAE+ + +PN TY++L+
Sbjct: 280 --SKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFS------RGCEPNKVTYSILISS 331
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 379
++ + EAI + + E L + DPL + ALC+EGR+
Sbjct: 332 LCRFGRIDEAISVLKVMIEKE-----LTPDTYSYDPL---ISALCKEGRL 373
Score = 40.8 bits (94), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+N +A + ++ + G P S++ ++ A GD A+ + +S G+ P
Sbjct: 403 CKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDE 462
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLR 198
T +L GL + + +L ME+ + ++ I++ L + + ++DA +F
Sbjct: 463 ITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAE 522
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIA 231
+ G R + Y L+I AG + A+E+A
Sbjct: 523 MIEKGCRPNETTYILLIEGIGFAGWRTEAMELA 555
>gi|115460498|ref|NP_001053849.1| Os04g0612800 [Oryza sativa Japonica Group]
gi|38568022|emb|CAE05207.3| OSJNBa0070C17.14 [Oryza sativa Japonica Group]
gi|113565420|dbj|BAF15763.1| Os04g0612800 [Oryza sativa Japonica Group]
Length = 784
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 11/232 (4%)
Query: 121 EGAMHSLKRELSAGVRPLH-ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLI 178
E A KR AG R L AL L ++GLA K E+L M + + + +
Sbjct: 207 EPAFFCFKRLRDAGFRVLETHAYNALLSLLLTRGLAFKAFEVLDEMSSSGCALDEGTYEL 266
Query: 179 LVEELVRNKYLEDANKVF--LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
+V L R ++ A K+F +R +G RA+ +Y +++ KAG A+ + EM A
Sbjct: 267 VVPALARAGRIDAARKMFDEMRKREGIGRASAGMYGVLVDVLAKAGRLDAAMGMYREMVA 326
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
G A+ ++ G + +E M G ++P Y V++A R+
Sbjct: 327 VGHRASPAVSTAVVEGLVRAGKLDAGMELWEEMRRGG--LRPSFGLYTMVVEANARS--- 381
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
R+ +L G M + P TYA LVE V A+R + ++ N
Sbjct: 382 GRLDVATQLFGDM--EKSGFFPTPATYACLVEMHASAGQVDAAMRLYHSMAN 431
>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
Length = 617
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 119/271 (43%), Gaps = 19/271 (7%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
DA + ++ D+ + L P F L+ A+ + A+ L + G+ P +
Sbjct: 208 DAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVT 267
Query: 144 ALARLFGSKGLATKG----LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
AL G+ G + LE A E I R A+ L++ VR L++A +V
Sbjct: 268 ALISALGTAGRVAEAEALFLEFFLAGE-IKPRTR-AYNALLKGYVRIASLKNAEQVLDEM 325
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
++ G+ + Y L++ +AG +A + EMEA G +++ F+ +L+ G
Sbjct: 326 SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDW 385
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
+ AFA M+ ++PD YN +I + + Y+ + + M E+ ++P+
Sbjct: 386 QKAFAVLREMQ--ASGVRPDRHFYNVMIDTFGK---YNCLGHAMDAFNKMREEG--IEPD 438
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
V T+ L++ K RH RA + +E
Sbjct: 439 VVTWNTLIDAHCK------GGRHDRAAELFE 463
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 111/294 (37%), Gaps = 21/294 (7%)
Query: 52 SLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDA-----------PRVNDVIYDMIAAGL 100
S L T G V A L E+ R +A V+ +M G+
Sbjct: 271 SALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGV 330
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE 160
+P ++ LV AYT G E A LK + GV+P + F +G K
Sbjct: 331 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFA 390
Query: 161 ILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L M+ + D R + ++++ + L A F + + G+ ++ +I
Sbjct: 391 VLREMQASGVRPD-RHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAH 449
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
CK G H A E+ EM + T +N +++ E A M+ E + P
Sbjct: 450 CKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMK--EQGLVP 507
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ TY ++ Y R+ Y D E M D L+P+ Y LV + +
Sbjct: 508 NIITYTTLVDVYGRSGRYKEAIDCIE---AMKADG--LKPSPTMYHALVNAYAQ 556
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 124/320 (38%), Gaps = 28/320 (8%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+NR D+ Y M + G+SP +++ L+ +G + A K L ++P
Sbjct: 255 CKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDV 314
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFL 197
T L +G+ + L + M +I DI + L+ + ++ ++++ +
Sbjct: 315 VTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDI-VTYSSLIHGVCKSSLWKESSTLLN 373
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+R + + + CK G S A I M G +N L+
Sbjct: 374 EMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHS 433
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+ A F+ M PD +YN +I+ Y ++E R+ + +L M HK L
Sbjct: 434 QMDEARKVFDIMV--NKGCAPDVLSYNILIKGYCKSE---RIDEAKQLFDEM--SHKGLT 486
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP-----LSLYLRA 372
PN T+ L+ + +A R + A + ++ G+ G P S L
Sbjct: 487 PNSITHTTLIS------GLCQAGRPYAAKELFK-------KMGSHGCPPDLITYSTLLSG 533
Query: 373 LCREGRIIELLEALEAMAKD 392
C+ G + E L EA+ K
Sbjct: 534 FCKHGHLDEALALFEALKKS 553
>gi|242055653|ref|XP_002456972.1| hypothetical protein SORBIDRAFT_03g046570 [Sorghum bicolor]
gi|241928947|gb|EES02092.1| hypothetical protein SORBIDRAFT_03g046570 [Sorghum bicolor]
Length = 821
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 44/243 (18%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GL +Y++ + CK G+ + A+++ EM A G + H+ L++ G E A
Sbjct: 399 GLHLDGVLYNVAMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLKGETENA 458
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ FE M +KPD TYN + Y+R V V +LL M++ + L+PN T
Sbjct: 459 WQVFEQMLKAN--IKPDVVTYNILSSGYSRN---GLVMKVFDLLEHMMD--QGLEPNSLT 511
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGG------------TKVLHN------------ 358
Y + + F + ++EA F ++ E G LH+
Sbjct: 512 YGIAIAGFCRGGNLSEAEVLFNIVE--EKGIDNIDVLYSSMVCGYLHSGWTDHAYMLFLR 569
Query: 359 ---EGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSS 413
+GN D LS + LCR+ ++ E M + N V P + Y L+S+
Sbjct: 570 VAKQGNMVDHLSCSKLINGLCRDEKVQEASTVCSMMLEKN--VVPHVI----SYSKLISA 623
Query: 414 WIE 416
+ +
Sbjct: 624 YCQ 626
>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
Length = 814
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 142/341 (41%), Gaps = 35/341 (10%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M++ GLS +++ L+ Y NG + A LK LS G + ++ L S +
Sbjct: 380 MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLM 439
Query: 155 ATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
L + M N L L+ L ++ A +++ + G +
Sbjct: 440 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 499
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENMEY 271
++ C+AG A I E+ G + +N L+S CG ++ AF + M
Sbjct: 500 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS--GCCGKKKLDEAFMFLDEMV- 556
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVEC 329
+ +KPD TY+ +I + ++V++ + +D KR + P+V TY+++++
Sbjct: 557 -KRGLKPDNYTYSILICGLF---NMNKVEEAIQFW----DDCKRNGMLPDVYTYSVMIDG 608
Query: 330 FTKYCAVTEAIRHFRAL--QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
K E F + +N + T V++N +RA CR GR+ LE E
Sbjct: 609 CCKAERTEEGQEFFDEMMSKNVQPNT-VVYNH---------LIRAYCRSGRLSMALELRE 658
Query: 388 AMAKDNQPVPPRAMILSRKYRTLVSSW-IEPLQEEAELGYE 427
M ++ + P S Y +L+ I EEA+L +E
Sbjct: 659 DM--KHKGISPN----SATYTSLIKGMSIISRVEEAKLLFE 693
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED--CKAGDHSNALEIAYEME 235
IL+ LVR + + F KG + ++Y A + CK G A+++ +ME
Sbjct: 220 ILLTSLVRANEFQKCCEAFDVVCKG---VSPDVYLFTTAINAFCKGGKVEEAVKLFSKME 276
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
AG FN ++ CG + AF E M E M+P TY+ +++ TRA+
Sbjct: 277 EAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMV--ERGMEPTLITYSILVKGLTRAK- 333
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
R+ D +L M + K PNV Y L++ F + ++ +AI
Sbjct: 334 --RIGDAYFVLKEMTK--KGFPPNVIVYNNLIDSFIEAGSLNKAI 374
>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 142/341 (41%), Gaps = 35/341 (10%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M++ GLS +++ L+ Y NG + A LK LS G + ++ L S +
Sbjct: 391 MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLM 450
Query: 155 ATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
L + M N L L+ L ++ A +++ + G +
Sbjct: 451 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 510
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENMEY 271
++ C+AG A I E+ G + +N L+S CG ++ AF + M
Sbjct: 511 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS--GCCGKKKLDEAFMFLDEMV- 567
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVEC 329
+ +KPD TY+ +I + ++V++ + +D KR + P+V TY+++++
Sbjct: 568 -KRGLKPDNYTYSILICGLF---NMNKVEEAIQFW----DDCKRNGMLPDVYTYSVMIDG 619
Query: 330 FTKYCAVTEAIRHFRAL--QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
K E F + +N + T V++N +RA CR GR+ LE E
Sbjct: 620 CCKAERTEEGQEFFDEMMSKNVQPNT-VVYNH---------LIRAYCRSGRLSMALELRE 669
Query: 388 AMAKDNQPVPPRAMILSRKYRTLVSSW-IEPLQEEAELGYE 427
M ++ + P S Y +L+ I EEA+L +E
Sbjct: 670 DM--KHKGISPN----SATYTSLIKGMSIISRVEEAKLLFE 704
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED--CKAGDHSNALEIAYEME 235
IL+ LVR + + F KG + ++Y A + CK G A+++ +ME
Sbjct: 231 ILLTSLVRANEFQKCCEAFDVVCKG---VSPDVYLFTTAINAFCKGGKVEEAVKLFSKME 287
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
AG FN ++ CG + AF E M E M+P TY+ +++ TRA+
Sbjct: 288 EAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMV--ERGMEPTLITYSILVKGLTRAK- 344
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
R+ D +L M + K PNV Y L++ F + ++ +AI
Sbjct: 345 --RIGDAYFVLKEMTK--KGFPPNVIVYNNLIDSFIEAGSLNKAI 385
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 24/222 (10%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ + L++A K+ + + GL Y+ ++ CK ++ EM AG
Sbjct: 168 LIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAG 227
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
R TF +N +++C G E A E M E PD TYN ++ + + D
Sbjct: 228 REPDTFSYNTVVACLCESGKYEEAGKILEKMI--EKKCGPDVVTYNSLMDGFCKVSKMDE 285
Query: 299 VQDVAE-LLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK--- 354
+ + E ++G +R P V TY L+ F++ + +A R + ++ G
Sbjct: 286 AERLLEDMVG------RRCAPTVITYTTLIGGFSRADRLADAYRVMEDM--FKAGISPDL 337
Query: 355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA-KDNQP 395
V +N L LC+ G++ E E LE M KD P
Sbjct: 338 VTYN---------CLLDGLCKAGKLEEAHELLEVMVEKDCAP 370
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 123/304 (40%), Gaps = 38/304 (12%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ +P ++ LV G + A L+ L G +P T + F G
Sbjct: 363 MVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGK 422
Query: 155 ATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+G ++L M++++ D+ + L++ + ++DA + G+ Y
Sbjct: 423 VDEGHKVLELMKEVSCTPDV-VTYSTLIDGYCKANRMQDAFAIL------GISPDKASYS 475
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV-----AFATFE 267
M+ C G A E+ M G T+ H+ ++ G+ +V A +
Sbjct: 476 SMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIG-----GLCDVERGDEALKMLQ 530
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M E +P+ TY+ +I + + RV+D +L +M+E K P+V TY L+
Sbjct: 531 VMS--ERGCEPNLYTYSILINGLCKTK---RVEDAINVLDVMLE--KGCVPDVATYTSLI 583
Query: 328 ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS--LYLRALCREGRIIELLEA 385
+ F K + A + F K + + G D L+ + + C+ G + + +E
Sbjct: 584 DGFCKINKMDAAYQCF----------KTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEV 633
Query: 386 LEAM 389
++ M
Sbjct: 634 MQLM 637
Score = 41.6 bits (96), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 125/317 (39%), Gaps = 30/317 (9%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V+ ++ +M+ AG P S++ +V +G +E A L++ + P T +L
Sbjct: 216 VSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMD 275
Query: 148 LFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
F + +L M + + L+ R L DA +V K G+
Sbjct: 276 GFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISP 335
Query: 207 TDEIYDLMIAEDCKAGDHSNA---LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
Y+ ++ CKAG A LE+ E + A + T ++ L++ G + A
Sbjct: 336 DLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVT---YSILVNGLCKLGKVDDAR 392
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
E M E +P+ T+N +I + +A D V EL+ P+V TY
Sbjct: 393 LLLEMML--ERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELM-----KEVSCTPDVVTY 445
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELL 383
+ L++ YC F L + ++ ++ S L LC G++ E
Sbjct: 446 STLID---GYCKANRMQDAFAIL-------GISPDKASY----SSMLEGLCSTGKVEEAQ 491
Query: 384 EALEAMAKDNQPVPPRA 400
E ++ M K Q PP +
Sbjct: 492 EVMDLMTK--QGCPPTS 506
>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 670
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 112/308 (36%), Gaps = 56/308 (18%)
Query: 87 RVNDVIY---DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
RV++ ++ +M A G P P +F+ L+ A + NGD A + G P T
Sbjct: 248 RVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYN 307
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKG 202
L KG K L +L M Q + ++ LV+ + ED + + +
Sbjct: 308 TLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEER 367
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G +A + IY +I+ K G NA+ + EM G
Sbjct: 368 GQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKG------------------------ 403
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVEDHKRLQPNVK 321
KP+ Y I R E D +D+ E+L K PN
Sbjct: 404 -------------CKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLS------KGFLPNAF 444
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381
TY+ L++ F K +AI ++ + + + V+ S+ L LC GR+ E
Sbjct: 445 TYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVC--------CSVLLNGLCESGRLRE 496
Query: 382 LLEALEAM 389
L M
Sbjct: 497 ALTVWTHM 504
>gi|224072823|ref|XP_002303899.1| predicted protein [Populus trichocarpa]
gi|222841331|gb|EEE78878.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 20/179 (11%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L RN L+ A + K G R + L++ C G+H+ A ++ ++ME G
Sbjct: 209 LIGYLCRNGELDKAKGLLEDMIKKGKRPNAITFALLMEGSCLIGEHNEAKKMMFDMEYRG 268
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
T +F L+S G + A + M+ + +MKPD TYN +I + R
Sbjct: 269 CKPTVVNFGVLMSDLGKRGKIDEAKSVLHEMK--KRHMKPDVVTYNILINYLCKE---GR 323
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
D E+L M + N TY +LV+ F + + ++EGG KVL+
Sbjct: 324 AADAYEVLFEM--QVGGCEANAATYRMLVDGFCR-------------VGDFEGGLKVLN 367
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 100/263 (38%), Gaps = 56/263 (21%)
Query: 80 ARNR-DAPRVNDV------------IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHS 126
+RNR DAP VN V ++ + G P S+ L+ D
Sbjct: 26 SRNRNDAPFVNHVKEARDPVEALTLFHEYLQRGFKPDYPSYAALLYKLARCQDFGAVEEV 85
Query: 127 LKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVR 185
L+ V IAL + +G L K +E+ M + N Q+ L+ LV
Sbjct: 86 LRYVEDKNVHCQETIFIALFQHYGKAQLVHKAVELFNRMTRFNCVRTSQSLNSLLNVLVD 145
Query: 186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH 245
N + +AN++F +G + G R +++MI + G+ A ++
Sbjct: 146 NGWFLEANELFDKGYEMGFRLNSVAFNVMIKGWLEKGEWEQASKV--------------- 190
Query: 246 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
F+ +L E ++P TYN +I R D+ + L
Sbjct: 191 FDEML----------------------ERKVEPSVVTYNSLIGYLCRNGELDKAKG---L 225
Query: 306 LGMMVEDHKRLQPNVKTYALLVE 328
L M++ KR PN T+ALL+E
Sbjct: 226 LEDMIKKGKR--PNAITFALLME 246
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 3/193 (1%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
RN + + ++ DMI G P +F L+ L G+H A + G +P
Sbjct: 214 CRNGELDKAKGLLEDMIKKGKRPNAITFALLMEGSCLIGEHNEAKKMMFDMEYRGCKPTV 273
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFL 197
L G +G + +L M+K + D+ + IL+ L + DA +V
Sbjct: 274 VNFGVLMSDLGKRGKIDEAKSVLHEMKKRHMKPDV-VTYNILINYLCKEGRAADAYEVLF 332
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
GG A Y +++ C+ GD L++ M +G F L+ G
Sbjct: 333 EMQVGGCEANAATYRMLVDGFCRVGDFEGGLKVLNAMLTSGHFPRVETFRSLVVGLVKSG 392
Query: 258 IPEVAFATFENME 270
+ A E ME
Sbjct: 393 NLDGACFVLEEME 405
>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Brachypodium distachyon]
Length = 1285
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/298 (19%), Positives = 113/298 (37%), Gaps = 26/298 (8%)
Query: 56 TNGSVVSAAEQGLRL----IFMEELMQ----------------HARNRDAPRVNDVIYDM 95
T +++SA QG L EE+M H R A + ++
Sbjct: 137 TYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFREL 196
Query: 96 IAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
+ G P +++ L+ A+ GD + + + AG + T + ++G G
Sbjct: 197 VEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRL 256
Query: 156 TKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
L + M + + +L++ L + + DA KV A GL+ T + +
Sbjct: 257 DLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSAL 316
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I K G A+ M A+G + +L A G A ++ M D
Sbjct: 317 ICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMM--ND 374
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+PD Y ++ A + YD ++ V + + ++ + + +L V + + EC ++
Sbjct: 375 GYRPDNALYQVMLAALAKGNEYDEIEAVVQDMEVVCQMNPQL---VSSILIKAECISQ 429
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 110/260 (42%), Gaps = 12/260 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
RN+ V ++ +M AG P + L++ YT NG+ + + L AG+ P
Sbjct: 740 CRNKRYRDVELMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNE 799
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLR 198
+T L ++ +G +L M K + +++ L+ + K E A ++F
Sbjct: 800 DTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEE 859
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G R +Y +++ A +HS A ++ M+ G T + L++ T G
Sbjct: 860 IRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMHILMTSYGTAGH 919
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
P+ A +++ ++ T Y+ V AY + Y+ + +LL M + ++P
Sbjct: 920 PDEAEKVLNSLKSSS--LEVSTLPYSTVFNAYLKNGDYN--LGITKLLEMKADG---VKP 972
Query: 319 NVKTYALLVECFTKYCAVTE 338
+ + + CF + ++ E
Sbjct: 973 DHQVWT----CFIRAASLCE 988
Score = 39.7 bits (91), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 43/232 (18%), Positives = 94/232 (40%), Gaps = 6/232 (2%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L+ + N + + +V + ++ AGL P +++ L+V Y+ N E L G+
Sbjct: 771 LLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGL 830
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195
P E+ +L G L + ++ + Y + ++ ++ ++ R+ +
Sbjct: 831 TPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQ 890
Query: 196 FLRGAK-GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
L K G+ T +++ AG A ++ ++++ +T ++ + +
Sbjct: 891 LLASMKEDGIEPTIATMHILMTSYGTAGHPDEAEKVLNSLKSSSLEVSTLPYSTVFNAYL 950
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
G + +E D +KPD + + C I+A + E R D LL
Sbjct: 951 KNGDYNLGITKL--LEMKADGVKPDHQVWTCFIRAASLCE---RTADAILLL 997
>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Glycine max]
Length = 1024
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 18/270 (6%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IAL 145
R ++ M+ G P F+ LV AY + D+ A K+ + G +P + I +
Sbjct: 325 RCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFI 384
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRN--------KYLEDANKVFL 197
+ ++ L G ++L EK ++ ++L + V N + A ++
Sbjct: 385 GSICSNEELP--GSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIIC 442
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
G D Y +I C A A + EM+ G + + + + L+ G
Sbjct: 443 EMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAG 502
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+ + A F+ M D P+ TY +I AY +A +V D +L MM+ + +
Sbjct: 503 LIQQARNWFDEML--RDNCTPNVVTYTSLIHAYLKAR---KVFDANKLFEMMLLEGSK-- 555
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
PNV TY L++ K + +A + + +Q
Sbjct: 556 PNVVTYTALIDGHCKAGQIDKACQIYARMQ 585
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 42/234 (17%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ L++ L R+ ++ A +V + GL Y+++I CK G AL++ M
Sbjct: 202 YTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMS 261
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR--- 292
G +N L++ ++ + A A E M GE ++PD T+N VI +
Sbjct: 262 EKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGW 321
Query: 293 -----------AESYDRVQDVA--ELLGMMVEDHK--------------RLQPNVKTYAL 325
AE+ R VA L+G ++ HK LQP+ TY++
Sbjct: 322 MRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSI 381
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREG 377
L+ F K R ++ E + ++G +P+ L+A+C +G
Sbjct: 382 LINGFCK----------MRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQG 425
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+R Y +I C A D A+E+ EM +G ++ LL G E
Sbjct: 124 GVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESV 183
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
FE M G ++PD Y +I + R + +V+ A ++ MM E + L+PNV T
Sbjct: 184 GKVFEEMS-GRG-IEPDVVMYTALIDSLCR---HGKVKKAARVMDMMTE--RGLEPNVVT 236
Query: 323 YALLVECFTKYCAVTEAI 340
Y +L+ K +V EA+
Sbjct: 237 YNVLINSMCKEGSVREAL 254
>gi|449446895|ref|XP_004141206.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
chloroplastic-like [Cucumis sativus]
Length = 668
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 6/219 (2%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H R DA R + M A G SP + L+ AY++NGD++ A ++ G+ P
Sbjct: 256 HNRLEDAERFFN---QMRAEGHSPNMFHYGSLLNAYSINGDYKKADELIEDMKLTGLVPN 312
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFL 197
L L +++ GL K ++L+ +E + Y + + +L++ L + + +A VF
Sbjct: 313 KVILTTLLKVYVRGGLFEKSRKLLSELESLGYGENEMPYCLLMDGLAKAGSIREAKTVFD 372
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
++ + +MI+ C+ G A +A + EA N +L G
Sbjct: 373 EMKAKNVKTDGYAHSIMISAFCRGGLLEEAKLLAKDFEATYDRYDIVILNTMLCAYCRAG 432
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
E M+ + + PD T++ +I+ + + + Y
Sbjct: 433 EMESVMQMLRKMD--DLAISPDYNTFHILIKYFFKEKLY 469
>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12300, mitochondrial; Flags: Precursor
gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 106/255 (41%), Gaps = 10/255 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P + + LV L+G AM + + + G +P T + + G
Sbjct: 184 MVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQ 243
Query: 155 ATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+E+L ME+ N + + I+++ L ++ L++A +F G+ Y++
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNI 303
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFENMEYG 272
+I C AG + ++ +M F+ L+ G + E E + G
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRG 363
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ PDT TY +I + + D+ + +L MV K PN++T+ +L+ + K
Sbjct: 364 ---IAPDTITYTSLIDGFCKENHLDKANQMVDL---MVS--KGCDPNIRTFNILINGYCK 415
Query: 333 YCAVTEAIRHFRALQ 347
+ + + FR +
Sbjct: 416 ANRIDDGLELFRKMS 430
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 108/259 (41%), Gaps = 10/259 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ DMI ++P +F L+ ++ G A K + G+ P T +L F
Sbjct: 320 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC 379
Query: 151 SKGLATKGLEILAAMEKINYD--IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+ K +++ M D IR + IL+ + ++D ++F + + G+ A
Sbjct: 380 KENHLDKANQMVDLMVSKGCDPNIR-TFNILINGYCKANRIDDGLELFRKMSLRGVVADT 438
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y+ +I C+ G + A E+ EM + + LL G E A FE
Sbjct: 439 VTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEK 498
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+E + M+ D YN +I A D D+ L + K ++P VKTY +++
Sbjct: 499 IE--KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL-----KGVKPGVKTYNIMIG 551
Query: 329 CFTKYCAVTEAIRHFRALQ 347
K ++EA FR ++
Sbjct: 552 GLCKKGPLSEAELLFRKME 570
>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
Length = 648
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 131/319 (41%), Gaps = 41/319 (12%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
++ Y MI +SP +++ L+ + + L++ + AG+RP ++T +L +
Sbjct: 85 ELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGY 144
Query: 150 GSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVF----LR 198
+ G+ + + + M +N + + L R+ +++A +F L+
Sbjct: 145 STAGMWKESVRVFKEMSSSGLIPCVVNCNS------FIHALCRHNRIKEAKDIFDSMVLK 198
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G K + + + AE C A +S + M + G + FN L++ A CG+
Sbjct: 199 GPKPNIISYSTLLHGYAAEGCFANMNS----LVNLMVSKGIVPNHRFFNILINAYARCGM 254
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ A FE+M+ M PDT T+ VI + R R+ D MV+ + P
Sbjct: 255 MDKAMLIFEDMQ--NKGMIPDTVTFATVISSLCRI---GRLDDALHKFNHMVD--IGVPP 307
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYE---GGTKVLHNEGNFGDPLSLYLRALCR 375
+ Y L++ + + +A + N + G K S + L +
Sbjct: 308 SEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKY----------FSSIINNLFK 357
Query: 376 EGRIIELLEALEAMAKDNQ 394
EGR+ E + ++ M + Q
Sbjct: 358 EGRVAEGKDIMDLMVQTGQ 376
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 8/223 (3%)
Query: 127 LKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVR 185
L+R GV P T L F K L +L M++ + A+ L+ L +
Sbjct: 395 LERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGK 454
Query: 186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH 245
K E AN++F + ++ +Y +MI K G + A+ + EM+ G + +
Sbjct: 455 AKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYA 514
Query: 246 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
+N L++ + + AF+ F ME E+ PD ++N ++ R R E+
Sbjct: 515 YNALITGMVRADMMDEAFSLFRTME--ENGCNPDINSHNIILNGLARTGGPKRAM---EM 569
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
M ++P+ +Y ++ C ++ EA + + + +
Sbjct: 570 FAKM--KSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNS 610
Score = 46.6 bits (109), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 97/240 (40%), Gaps = 44/240 (18%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
+ Y + P +++ +++ G HE +H L E+ + +T+ A
Sbjct: 182 IFYQVKGRKCRPTAGTYNSVILMLMQEGHHE-KVHELYNEMCSEGHCFPDTVTYSA---- 236
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
+++A K+N D + A ++F + GL+ T +I
Sbjct: 237 ----------LISAFGKLNRD------------------DSAVRLFDEMKENGLQPTAKI 268
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y ++ K G AL + +EM + T + + L+ G E A+ ++NM
Sbjct: 269 YTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNML 328
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ--PNVKTYALLVE 328
+D KPD N +I R+ DR+++ EL E+ + L PNV TY +++
Sbjct: 329 --KDGCKPDVVLMNNLINILGRS---DRLKEAVELF----EEMRLLNCTPNVVTYNTIIK 379
>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
Length = 521
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 98/250 (39%), Gaps = 8/250 (3%)
Query: 86 PRVNDVIY-DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA 144
P +++Y M A P +F L+ A+ G + A + +P H A
Sbjct: 225 PSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNA 284
Query: 145 LARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
L + G LEI M++ + + IL+ R EDA K+F G
Sbjct: 285 LMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAG 344
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
+ L+++ +AG A E+ ME G T +N L++ G E
Sbjct: 345 FSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRHEDME 404
Query: 264 ATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
A M + KPD TYN +IQ Y +A + +++ + L + +L P+ T
Sbjct: 405 ALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLARL-----KLVPDATT 459
Query: 323 YALLVECFTK 332
+ L+ + K
Sbjct: 460 WTALMGGYAK 469
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 11/175 (6%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L++ ++ +EDA K F R + +E + ++I AG A E+ +M+
Sbjct: 109 LLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEELFVQMQKR 168
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G N L A A F ++E E +P+ +TYN +I Y +A
Sbjct: 169 GYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYE--CEPNIDTYNRMIVIYGKAGEPS 226
Query: 298 RVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
+ + M+ +R PN+ T+ L+ F + EA R+F LQ ++
Sbjct: 227 KAE-------MLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEFD 274
>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
Length = 796
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 11/260 (4%)
Query: 76 LMQHARNRDAPRVNDVIYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG 134
L+ R R R ++D M AAG P +F+ L+ Y HE A+ LK+ +AG
Sbjct: 262 LISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAG 321
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDA 192
P T +L + GL + LE+ ME + D+ + L+ L R ++ A
Sbjct: 322 CTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDV-VTYTTLISGLDRIGKIDAA 380
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
+ + G Y+ +I G + + + ++ +AG + +N LL+
Sbjct: 381 LATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAV 440
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G+ F+ M+ Y+ P+ +TY +I +Y+R +D+ E+ M+E
Sbjct: 441 FGQNGLDSEVSGVFKEMKKA-GYI-PERDTYVSLISSYSRCGLFDQAM---EIYKRMIE- 494
Query: 313 HKRLQPNVKTYALLVECFTK 332
+ P++ TY ++ +
Sbjct: 495 -AGIYPDISTYNAVLSALAR 513
Score = 46.2 bits (108), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 131/342 (38%), Gaps = 55/342 (16%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP----LHETLI 143
V+ V +M AG P ++ L+ +Y+ G + AM KR + AG+ P + L
Sbjct: 450 VSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLS 509
Query: 144 ALAR---------LFG---------------SKGLATKGLEILAAMEKINYDIR------ 173
ALAR LF S A + L M+ ++ DI
Sbjct: 510 ALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEP 569
Query: 174 QAWLILVEELVRNKY--LEDANKVF--LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229
WL+ LV NK L + K F LR + L + + M++ K E
Sbjct: 570 HNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDIN--VLNAMVSIYGKNKMVKKVEE 627
Query: 230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
+ M+ + +N L+ + G E A E M+PD +YN VI A
Sbjct: 628 VLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILT--EIKSSGMRPDRYSYNTVIYA 685
Query: 290 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
Y R ++++ + L M ++P++ TY + ++ + EAI R L
Sbjct: 686 YGRK---GQMKEASRLFSEM--KCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYL--V 738
Query: 350 EGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391
G K NE + L Y CR GR++E L + K
Sbjct: 739 AQGCK--PNERTYNSILEGY----CRHGRMVEAKSFLSNLPK 774
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 116/294 (39%), Gaps = 37/294 (12%)
Query: 54 LSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVA 113
+ST +V+SA +G R + E+L +RD P S+ L+ A
Sbjct: 501 ISTYNAVLSALARGGRWVQAEKLFAEMEDRDC---------------KPDELSYSSLLHA 545
Query: 114 YTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR 173
Y N M +L ++ A H L+ L +K + L+ EK ++R
Sbjct: 546 YA-NAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNK------VNSLSETEKAFQELR 598
Query: 174 QAWLIL--------VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
+ L V +NK ++ +V + + + Y+ ++ + GD
Sbjct: 599 RRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCE 658
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
I E++++G + +N ++ G + A F M+ +KPD TYN
Sbjct: 659 KCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSG--VKPDIVTYNI 716
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
I++Y ++ D+ L + +PN +TY ++E + ++ + EA
Sbjct: 717 FIKSYVANLMFEEAIDLVRYLVA-----QGCKPNERTYNSILEGYCRHGRMVEA 765
>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
Length = 581
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEA 236
I+V+ L R + ++V R + G+ + + + +I+ CKAG +A+ + +M A
Sbjct: 289 IIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVA 348
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
+G M T +N L++ G A ++ M PD T++ +I Y R
Sbjct: 349 SGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMT--RLRCPPDVVTFSSLIDGYCRCGQL 406
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
D D + M + R+QPNV T+++++ K EAIR
Sbjct: 407 D---DALRIWSDMAQ--HRIQPNVYTFSIIIHSLCKQNRSDEAIR 446
>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
Length = 793
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 103/253 (40%), Gaps = 9/253 (3%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D + +IA L P +F+ LV + G A+ +L + G+ P T L
Sbjct: 195 DAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAH 254
Query: 150 GSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
KG+ + +LA M+K R + LV R +++ A V G
Sbjct: 255 CRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDL 314
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMAT-TFHFNHLLSCQATCGIPEVAFATFE 267
Y+++ A C+AG A ++ EME G ++ +N L+ C A E
Sbjct: 315 WTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLE 374
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M E +K T+N +++ R ++++ L MM E+ L P+V TY L+
Sbjct: 375 EMR--EKGVKSSLVTHNIIVKGLCRE---GQLEEALGRLEMMTEE--GLTPDVITYNTLI 427
Query: 328 ECFTKYCAVTEAI 340
+ K V +A
Sbjct: 428 DASCKAGNVAKAF 440
Score = 40.8 bits (94), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 114/299 (38%), Gaps = 67/299 (22%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAA----------------GLSPGPRSFHGLVVA 113
+ M+E+++ D +N ++Y++ G P S+ ++ A
Sbjct: 440 FVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAA 499
Query: 114 YTLNGDHEGAM----HSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
Y E A+ +KR+L+ + + TLI KGL+T G ++ A++K+N
Sbjct: 500 YFKEYKPEPALCLWDEMIKRKLTPSIST-YNTLI--------KGLSTMG-KLTEAIDKLN 549
Query: 170 YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229
EL+ + GL D Y+++I CK GD A +
Sbjct: 550 ------------ELM----------------EMGLVPDDTTYNIIIHAYCKEGDLEKAFQ 581
Query: 230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
+M N L++ G E A FE+ + E K D TYN +IQA
Sbjct: 582 FHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFES--WVEKGKKVDVITYNTLIQA 639
Query: 290 YTRAESYDRVQDVAELLGMMVEDHKR-LQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ DV L + R LQP+V TY +L+ ++ EA + L
Sbjct: 640 LCKD------NDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLN 692
>gi|356523408|ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Glycine max]
Length = 577
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 12/208 (5%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGA---MH-SLKRELSAGVRPLHETLIAL 145
+++ +++ GL P F+ L+ + G ++ +H + ++ + V E + L
Sbjct: 235 ELLKELLENGLCPDNVVFNELIRGFCKEGQYDRVSEILHIMIAKQCNPDVSTYQEIIYGL 294
Query: 146 ARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
++ S+G ++ ++ Y R + +++ L + L +A K++ K G
Sbjct: 295 LKMKNSEGF-----QVFNDLKDRGYFPDRVMYTTVIKGLCEMQRLGEARKLWFEMIKKGF 349
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ + Y++M+ CK GD + A +I +M G TT + ++S G + A +
Sbjct: 350 QPNEYTYNVMMHGYCKIGDLAEARKIFEDMRDRGYAETTVSYGTMISGLCLHGRTDEAQS 409
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTR 292
FE M + + PD TYNC+I+A +
Sbjct: 410 LFEEM--FQKGIVPDLITYNCLIKALCK 435
>gi|449504220|ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 16/232 (6%)
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI-ALARLFGSKG--LATK 157
SP +++ L+ + TL+G E A+ L+ + A +P + +ARL + L K
Sbjct: 304 SPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVK 363
Query: 158 GL-EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
L +++ N A L EE +++A + +T E Y ++I
Sbjct: 364 CLDQMMYRHCNPNEGTYNAIATLCEE----GMVQEAFSIIQSLGNKQHFSTQEFYKIVIT 419
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
C+ G+ A ++ YEM G +F ++ L+ G+ A F M E+ +
Sbjct: 420 SLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVM---EENI 476
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
K DTE YN +I ++ D DV E++ K N TY +LVE
Sbjct: 477 KLDTENYNSLILGCCKSRRTDLALDVFEIM-----VGKGYLANETTYTILVE 523
>gi|449453792|ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 16/232 (6%)
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI-ALARLFGSKG--LATK 157
SP +++ L+ + TL+G E A+ L+ + A +P + +ARL + L K
Sbjct: 304 SPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVK 363
Query: 158 GL-EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
L +++ N A L EE +++A + +T E Y ++I
Sbjct: 364 CLDQMMYRHCNPNEGTYNAIATLCEE----GMVQEAFSIIQSLGNKQHFSTQEFYKIVIT 419
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
C+ G+ A ++ YEM G +F ++ L+ G+ A F M E+ +
Sbjct: 420 SLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVM---EENI 476
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
K DTE YN +I ++ D DV E++ K N TY +LVE
Sbjct: 477 KLDTENYNSLILGCCKSRRTDLALDVFEIM-----VGKGYLANETTYTILVE 523
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 111/273 (40%), Gaps = 54/273 (19%)
Query: 46 QQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPR 105
QQK S + + GSVV A +N P ++ DMI ++P +
Sbjct: 288 QQKGIKSDVISFGSVVKA---------------FCKNGKIPEAVAILDDMIYKDVAPNAQ 332
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
++ ++ AY +GD E A +++ ++GV S + T L
Sbjct: 333 VYNSIIDAYIESGDTEQAFLLVEKMKNSGV---------------SASIVTYNL------ 371
Query: 166 EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
L++ L R+ +++A ++ GLR Y+ +I+ C GD
Sbjct: 372 -------------LLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTD 418
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
ALE+ EM G T ++ L+S A+ G ++ M + ++P + Y
Sbjct: 419 KALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKN--VEPSSSIYGI 476
Query: 286 VIQAYTRAESYDRVQDVAELL---GMMVEDHKR 315
++ AY R E+ +V + + + G+ +D KR
Sbjct: 477 MVDAYVRCENDSKVASLKKEMSEKGIAFDDTKR 509
Score = 47.4 bits (111), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 123/324 (37%), Gaps = 65/324 (20%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
++ GL P ++ L+ Y D GA ++ S +RP H T AL +
Sbjct: 182 LVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 241
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
TK +++ ME K G+ + E ++ +
Sbjct: 242 VTKAEDLVMEME----------------------------------KSGVDPSVETFNTL 267
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFENMEYGE 273
I AG + +M+ G + F ++ G IPE A A ++M Y +
Sbjct: 268 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPE-AVAILDDMIYKD 326
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFT 331
+ P+ + YN +I AY ES D Q ++VE K + ++ TY LL++
Sbjct: 327 --VAPNAQVYNSIIDAYI--ESGDTEQAF-----LLVEKMKNSGVSASIVTYNLLLKGLC 377
Query: 332 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAM 389
+ + EA E L N+G D +S + A C +G + LE L+ M
Sbjct: 378 RSSQIDEA----------EELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEM 427
Query: 390 AKDNQPVPPRAMILSRKYRTLVSS 413
K + P R Y TLVS+
Sbjct: 428 NK--YGIRPTL----RTYHTLVSA 445
Score = 41.2 bits (95), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 21/206 (10%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++IA ++G S+AL++ EM G + +N ++ G E F + M
Sbjct: 19 YNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQML 78
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+ D KP+ TYN ++ RA D + + + + + P+ TY++L +
Sbjct: 79 H--DGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMA-----SHSMFPDGFTYSILFDGL 131
Query: 331 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
T+ + F ++ + G + G + S+ L LC++G++ + + LE +
Sbjct: 132 TRTGESRTMLSLFA--ESLKKGVML----GAY--TCSILLNGLCKDGKVAKAEQVLEMLV 183
Query: 391 KDNQPVPPRAMILSRKYRTLVSSWIE 416
+ + P +I Y TL++ + +
Sbjct: 184 --HTGLVPTTVI----YNTLINGYCQ 203
>gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475
gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana]
gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 506
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATCGIPEV 261
GL+ I+++++ CK GD + A + EM+ +G + ++ L+ C +
Sbjct: 191 GLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKE 250
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A FE+M ++ + PD T+N +I + RA +R + + + + PNV
Sbjct: 251 AVELFEDM-ISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFM-----KKNGCNPNVY 304
Query: 322 TYALLVECFTKYCAVTEAIRHF 343
Y+ L+ F K + EA + F
Sbjct: 305 NYSALMNGFCKVGKIQEAKQTF 326
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 5/223 (2%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+V++++ +M ++G P S++ L+ AY GD AM ++ A P T L
Sbjct: 301 KVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLL 360
Query: 147 RLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
L+G G E+ M+ N D+ + +L+E Y ++ +F + +
Sbjct: 361 NLYGGHGRYDDVRELFLEMKVSNTEPDV-GTYNVLIEVFGEGGYFKEVVTLFHDMVEENV 419
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
Y+ +I K G H +A +I M+ G + +T + ++ E A
Sbjct: 420 EPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALV 479
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
F M E KP ETYN +I + R Y + + +G
Sbjct: 480 MFNTMN--EMGSKPTVETYNSLINMFARGGLYKESEAIMWKMG 520
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 107/258 (41%), Gaps = 11/258 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
++ +M G+ S+ L+ +Y +G +E ++ L+R V P T +
Sbjct: 163 EIFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSC 222
Query: 150 GSKGLATKGL-EILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
GL +GL + A M E I DI + L+ ++A VF +GG+
Sbjct: 223 ARGGLNWEGLLSLFAEMRHEGIQPDI-ITYNTLLNACANRGLGDEAEMVFRTMNEGGMVP 281
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y ++ K E+ EME++G + +N LL A+ G A F
Sbjct: 282 DITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVF 341
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
M+ E P+ TY+ ++ Y YD V+++ L M V + +P+V TY +L
Sbjct: 342 RQMQ--EARCVPNAVTYSMLLNLYGGHGRYDDVREL--FLEMKVSN---TEPDVGTYNVL 394
Query: 327 VECFTKYCAVTEAIRHFR 344
+E F + E + F
Sbjct: 395 IEVFGEGGYFKEVVTLFH 412
>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 819
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 106/265 (40%), Gaps = 12/265 (4%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
DA RV D DM GL P + + L+ + E A L+ LS + +
Sbjct: 364 DALRVRD---DMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACS 420
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELVR-NKYLEDANKVFLRGAK 201
+ L L+I+ A+ N + + L +LV L + K+LE + F K
Sbjct: 421 YVLHLLCKSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADK 480
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
GL A + ++ C+ G+ + EM G + +N L+ G E
Sbjct: 481 KGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEE 540
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
AF E M + KPDT TYN +++ D V V +DH + PN+
Sbjct: 541 AFKLKEKMM--KQGFKPDTYTYNFLMKGLADKGKMDDVGRVLH----EAKDHG-VVPNIY 593
Query: 322 TYALLVECFTKYCAVTEAIRHFRAL 346
TYAL++E + + A+ F L
Sbjct: 594 TYALMLEGYCNADRIDNAVSLFNKL 618
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 110/262 (41%), Gaps = 28/262 (10%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M+ GL S++ L+ +G E A ++ + G +P T L
Sbjct: 509 VCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLM---- 564
Query: 151 SKGLATKGLEILAAMEKINYDIRQA-----------WLILVEELVRNKYLEDANKVFLRG 199
KGLA KG M+ + + +A + +++E +++A +F +
Sbjct: 565 -KGLADKG-----KMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKL 618
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
+ + +Y+++IA KAG+ + A ++ M ++ T F ++ ++ +
Sbjct: 619 VYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLV 678
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
E A FE M + + P+ Y +I Y + D+++ + + + +QPN
Sbjct: 679 EEAKGIFEEMR--NEGLMPNVFCYTALIGGYCKLGQMDQIESILQEM-----TSNCIQPN 731
Query: 320 VKTYALLVECFTKYCAVTEAIR 341
TY ++++ + K EA +
Sbjct: 732 KITYTIMIDGYCKMGNTKEATK 753
>gi|302758538|ref|XP_002962692.1| hypothetical protein SELMODRAFT_62267 [Selaginella moellendorffii]
gi|300169553|gb|EFJ36155.1| hypothetical protein SELMODRAFT_62267 [Selaginella moellendorffii]
Length = 495
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 112/265 (42%), Gaps = 22/265 (8%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARL-- 148
++ +M+ L P F LV G + A +R + G +P + +IA L
Sbjct: 217 LLAEMLEKKLQPDVVCFSSLVDCLDKAGRYGDAYRLFRRMMEQGCKP--DAVIASVILDS 274
Query: 149 FGSKGLATKGLEILAAMEKINYDIRQAWLI--LVEELVRNKYLEDANKVFLRGAKGGLRA 206
F +G + LE++ + + A I LV+ +V +ED ++ A G R
Sbjct: 275 FTKRGEVAQALELVNEFVDRDLPLPSAGSINQLVKRIVVGDKVEDGVRLLKTMASRGSRP 334
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC--QATCGIPEV--A 262
Y ++ E C+ + ALE+ EM AAG + LSC + C + V A
Sbjct: 335 LQCSYATLLRELCRRKNAVEALELVKEMRAAGYTSVD------LSCVIEMLCKMKMVDEA 388
Query: 263 FATFENMEYGEDY-MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
+E M+ + + P TYN +++ R R+ D +L M+E + P+V
Sbjct: 389 RGLYEEMKSSQQQELLPSVSTYNILLE---RLCGEGRLGDAKDLFQEMIESGR--IPDVN 443
Query: 322 TYALLVECFTKYCAVTEAIRHFRAL 346
+Y +LVE K + + F+ L
Sbjct: 444 SYEILVEALCKAGKIFQGHELFKQL 468
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 119/311 (38%), Gaps = 56/311 (18%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I ++ L + AR DA + + DMI AG +P +++ L+ + G+ + A+ +
Sbjct: 241 ILVDALCKSARISDASLI---LEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM 297
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE 190
L P + Y+I L++ + + +
Sbjct: 298 LENSCSP----------------------------DVFTYNI------LIDGYCKQERPQ 323
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
D K+ K G Y+ ++ K+G + +A +A M + F FN ++
Sbjct: 324 DGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMI 383
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
G ++A+ F+ M + PD TYN +I RA +R+ D +LL M
Sbjct: 384 DMFCKVGQLDLAYELFQLMT--DRGCLPDIYTYNIMISGACRA---NRIDDARQLLERMT 438
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD--PLSL 368
E P+V TY +V K V EA + +VL N G F D S
Sbjct: 439 E--AGCPPDVVTYNSIVSGLCKASQVDEAYEVY----------EVLRNGGYFLDVVTCST 486
Query: 369 YLRALCREGRI 379
+ LC+ R+
Sbjct: 487 LIDGLCKSRRL 497
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEA 236
L+ VR K ++A +F + + GL + D I Y +I CKA D A + EME
Sbjct: 137 CLLSAFVRKKKAQEAYDLF-KNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 195
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
G + +N ++ G + A + +M+ P TY ++ A ++
Sbjct: 196 RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRN---CAPSVITYTILVDALCKSA-- 250
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
R+ D + +L M+E PNV TY L+ F K + EA+ F +
Sbjct: 251 -RISDASLILEDMIE--AGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM 297
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 71/357 (19%), Positives = 138/357 (38%), Gaps = 28/357 (7%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L R + A D+ + SP ++ L+ + D + A L G+
Sbjct: 139 LSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGI 198
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195
P + + + G L M++ + ILV+ L ++ + DA+ +
Sbjct: 199 VPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLI 258
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+ G Y+ +I CK G+ A+ + +M F +N L+
Sbjct: 259 LEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCK 318
Query: 256 CGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
P+ + M +YG +P+ TYN ++ + ++ Y ++A++ M+ D K
Sbjct: 319 QERPQDGAKLLQEMVKYG---CEPNFITYNTLMDSLVKSGKYIDAFNLAQM--MLRRDCK 373
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD--PLSLYLRA 372
P+ T+ L+++ F K + A F +++ + G D ++ +
Sbjct: 374 ---PSHFTFNLMIDMFCKVGQLDLAYELF----------QLMTDRGCLPDIYTYNIMISG 420
Query: 373 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQ-EEAELGYEI 428
CR RI + + LE M + PP + Y ++VS + Q +EA YE+
Sbjct: 421 ACRANRIDDARQLLERMTEAG--CPPDVV----TYNSIVSGLCKASQVDEAYEVYEV 471
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 7/170 (4%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ L +++ L+DA K+ + G Y ++I CKA +L EM G
Sbjct: 487 LIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKG 546
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ T ++ ++ C V E + PD Y VI +++SYD
Sbjct: 547 CVPTVITYSIVI--DKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDE 604
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
++ +L+ P V TY +LV+ K + EAI +++
Sbjct: 605 AYELYKLM-----KQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMES 649
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 7/165 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
++ IL++ L + L +A K+F R G+ + Y+++I C A ALE+ M
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G + F FN L+ G + AF + M +D PD TY+ +I
Sbjct: 247 RSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMT--DDGHVPDVVTYSTLISGLC--- 301
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
S RV D LL MV+ ++ +P V T L+ K + EA
Sbjct: 302 SIARVDDARHLLEDMVK--RQCKPTVVTQNTLIHGLCKAGRIKEA 344
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 98/260 (37%), Gaps = 53/260 (20%)
Query: 95 MIAAGLSPGPRSF----HGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
M+ +G++P ++ HG+ +AYTL + A+ K S G RP T L
Sbjct: 211 MLDSGITPSAVTYNVVIHGMCLAYTL----DEALELFKSMRSKGCRPSRFTFNILIDAHC 266
Query: 151 SKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G + +L M + D+ + L+ L ++DA + K + T
Sbjct: 267 KRGKMDEAFRLLKRMTDDGHVPDV-VTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTV 325
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+ +I CKAG A E+ M ++G+
Sbjct: 326 VTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ----------------------------- 356
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
PD TYN ++ + RA +R + ELL MV + L PNV TY LV
Sbjct: 357 --------SPDVVTYNTLVHGHCRAGQTERAR---ELLSDMVA--RGLAPNVVTYTALVS 403
Query: 329 CFTKYCAVTEAIRHFRALQN 348
K + EA F +++
Sbjct: 404 GLCKANRLPEACGVFAQMKS 423
Score = 40.0 bits (92), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 7/170 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
A+ L+ L +DA ++F + G + Y+++I CK G A ++ +M
Sbjct: 47 AYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKM 106
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
G + +N ++ G E A F ME P+ ++N +I +
Sbjct: 107 IEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEME--RLGCTPNRRSHNTIILGLCQQS 164
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 344
D+ V + + + + P+ +Y +L++ K + EA + FR
Sbjct: 165 KIDQACQVFHEM-----EARDIPPDSWSYGILIDGLAKAGKLNEAYKLFR 209
>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g19290-like [Cucumis
sativus]
Length = 885
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 99/254 (38%), Gaps = 11/254 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ GL+P + L+++ G + A +L + G + L + G
Sbjct: 493 MVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGA 552
Query: 155 ATKGLEILAAME-KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ M+ + + A+ + L + + DA VF + G + +Y+
Sbjct: 553 VNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNS 612
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
+I CK G + AL++ EM G + F N ++ G ++A TF M+
Sbjct: 613 LIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETF--MDMCR 670
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
+ PD TYN +I Y +A D+ MM +P++ TY + + Y
Sbjct: 671 MGLSPDIVTYNTLIDGYCKAFDVGGADDL-----MMKMSDSGWEPDLTTYNIRIH---GY 722
Query: 334 CAVTEAIRHFRALQ 347
C V + R L+
Sbjct: 723 CTVRKINRAVMILE 736
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 105/261 (40%), Gaps = 52/261 (19%)
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATFEN 268
I+++++ C+ GD +A E+ EM + ++ L+ G + AF FE
Sbjct: 275 IFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFELFEE 334
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL---------------------- 306
M +D + PD TYN +I + R DR ++V E +
Sbjct: 335 M-VSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKA 393
Query: 307 -------GMMVE-DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
G++ E L+P+ TY L+ F++ + EAI ++ + +
Sbjct: 394 GKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTV-- 451
Query: 359 EGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSR-KYRTLVSSWIEP 417
++ L LCREGR E L+ +E + P + + L++ YR +++S
Sbjct: 452 ------TFNVILGGLCREGRFDEALDMIEKL-------PQQGVYLNKGSYRIVLNS---- 494
Query: 418 LQEEAELGYEIDYIARYISEG 438
L + EL + +S G
Sbjct: 495 LTQNCELRKANKLLGLMLSRG 515
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 102/245 (41%), Gaps = 10/245 (4%)
Query: 86 PRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIAL 145
P+V ++ + P + ++ Y GD + L+ L+AG P L
Sbjct: 106 PQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVL 165
Query: 146 ARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
G + E+ M K ++ L+E L + L++A +++ + G
Sbjct: 166 IDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGY 225
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATT-FHFNHLLSCQATCGIPEVAF 263
E+ D +I CKAG A EI Y+ A ++AT+ +N L+ G +
Sbjct: 226 EPYLEVQDSLIFALCKAGKVDEANEI-YQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGL 284
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
M +++ PD +TYN ++ ++RA +R+ D EL ++ +PN TY
Sbjct: 285 KLLLQMVECDNF--PDIQTYNILVAGFSRA---NRLDDALELFKLL--SSYGCKPNAATY 337
Query: 324 ALLVE 328
+++
Sbjct: 338 TTIIQ 342
>gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic [Vitis vinifera]
gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera]
Length = 567
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+T + Y +I+ C+ G+ A ++ YEM G + ++ ++ L+ + G+ + A
Sbjct: 409 STHDFYKGVISSLCRKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEI 468
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
F ME E+Y +PD + +N +I + D V E MMV+ K PN TY +
Sbjct: 469 FSIME--ENYCRPDVDNFNALILGLCKCRKTDLSLMVFE---MMVK--KGYMPNETTYTI 521
Query: 326 LVE 328
+VE
Sbjct: 522 IVE 524
Score = 40.8 bits (94), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 23/204 (11%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ EL ++ + A KV G ++ CK G+ A+++ +ME G
Sbjct: 103 LMYELCKSNKMRKATKVMELMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEYG 162
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK----PDTETYNCVIQAYTRAE 294
T +N L+ + C ++ ++++ + +MK P+ TY+ +++A +
Sbjct: 163 YPTNTVTYNSLV--RGLCMHGNLS----QSLQILDKFMKKGLVPNVFTYSFLLEAAYKER 216
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354
D + LL +V K +PN+ +Y +L+ K EA++ FR L +
Sbjct: 217 GAD---EAIRLLDEIVA--KGGKPNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPN 271
Query: 355 VLHNEGNFGDPLSLYLRALCREGR 378
V+ ++ LR+LC EGR
Sbjct: 272 VVS--------YNILLRSLCYEGR 287
>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
Length = 1443
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 116/278 (41%), Gaps = 19/278 (6%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L H R RD V +I +M AG P F+ L+ YT G+ + + L AG+
Sbjct: 895 LCHHNRFRD---VELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGL 951
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANK 194
P +T L ++ +G +L M K + Q++ L+ + + E A++
Sbjct: 952 EPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQ 1011
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+F + IY +M+ AG+HS A + M+ G T + L++
Sbjct: 1012 LFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYG 1071
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
T G P A +++ ++ T Y+ V AY + YD + +LL M
Sbjct: 1072 TAGQPHEAENVLNSLKSSS--LEVSTLPYSTVFDAYLKNGDYD--LGIKKLLEM---KRD 1124
Query: 315 RLQPNVKTYALLVECFTKYCAVTE----AIRHFRALQN 348
++P+ + + CF + ++ E AI ++LQ+
Sbjct: 1125 GVEPDHQVWT----CFIRAASLCEQTADAILLLKSLQD 1158
Score = 43.5 bits (101), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 7/152 (4%)
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A +VFLR A G AT ++++ M+ ++G +A ++ M G FN L++
Sbjct: 207 AEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLIN 264
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
++ G A E + ++PD TYN +I A +++ + ++D + M+
Sbjct: 265 ARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSN---LEDAVTVFEEMIA 321
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
R P++ TY +V + EA R F
Sbjct: 322 SECR--PDLWTYNAMVSVHGRCGKAEEAERLF 351
Score = 39.7 bits (91), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ GLR Y+ +I+ ++ + +A+ + EM A+ + +N ++S CG E
Sbjct: 286 QSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAE 345
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
A F E E PD TYN ++ A+ + + D+V+ E
Sbjct: 346 EAERLFG--ELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCE 387
>gi|242041019|ref|XP_002467904.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
gi|241921758|gb|EER94902.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
Length = 558
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 5/197 (2%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
++P +SF V G + A ++ ++ G RP T A+ +G TK +
Sbjct: 174 VAPDAQSFATAVQCLCRQGAPDEAKLAIDEMVARGFRPSVATFSAVVGCLCKRGRVTKAM 233
Query: 160 EILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
E+ AM + + +++ LV L LE+A + + + T +IY I D
Sbjct: 234 EVFDAMRALGCEPTIRSYNSLVGGLCYVGRLEEALDLLNKLKDSPM--TPDIYTFTIVLD 291
Query: 219 --CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
CK G A I ++ G T F +N LL+ G P AFA M +
Sbjct: 292 GFCKVGRTEEATAIFHDAIGMGLSPTIFTYNALLNGHCKEGNPLKAFALLMEMCGNDAAC 351
Query: 277 KPDTETYNCVIQAYTRA 293
PD ++ V+ A RA
Sbjct: 352 PPDKISFGIVLTALLRA 368
>gi|108705884|gb|ABF93679.1| expressed protein [Oryza sativa Japonica Group]
gi|215740500|dbj|BAG97156.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 424
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 116/285 (40%), Gaps = 23/285 (8%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT-K 157
G SP + H L+V + AM +S PL E A A L S+G A
Sbjct: 106 GFSPSAHA-HNLLVENAGSLADYRAMSRAMESMSTRRVPLTER--AFAFLNTSQGSARDT 162
Query: 158 GLEILAAMEKINYDIRQAWLI-LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+ ILA ++++ R + + LV+ L + A V A+G Y+ +IA
Sbjct: 163 AIAILATLDEVGGPCRASGVFSLVKALASIGEFDAAMSVIQETARGA-----RYYNALIA 217
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
CK GD A E+ EM +G + +N+LL C G A E ME E
Sbjct: 218 VKCKTGDFHGAREVFDEMRRSGFGPNSNSWNYLLGCLLKNGRVAEACELVEAMERSEHND 277
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
P++ TY I AY ++ R+ +L M + +L P + + ++ + +
Sbjct: 278 IPNSLTYE--ILAYHACKA-GRMDSAMRILDQMFLE--KLTPRITIHTAFIKGYLYAGRI 332
Query: 337 TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381
+A R+ A+ + + SL + LC+ G I++
Sbjct: 333 DDACRYVSAMST--------RDRRSVNRNYSLLAKLLCKAGMIVD 369
>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 540
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 13/300 (4%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+IF + +A+ R A + V+ M GL P + ++ A+ GA+ +
Sbjct: 235 VIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEE 294
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKY 188
+ R T I + ++ G + E+LA M ++ + A+ L++ +
Sbjct: 295 MQESNCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGK 354
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
L++A ++F + G + +Y+ M+ KAG ++A + E++ + + T +
Sbjct: 355 LQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTT 414
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
L++ G E FE ++ D +K D +I Y +A Y + +AELL +
Sbjct: 415 LINAYNRLGRFEECIRVFE--QHRADGLKLDRILVAIMINVYGKARQYSK---LAELLEV 469
Query: 309 MVEDHKRLQPNVKTYALLVECF--TKYC-AVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365
M + +QP+ + +VE + C E +R L EG T LH + + P
Sbjct: 470 MPKSG--IQPDTRILKTVVEIYEDGGMCENAAELLRKINELGPLEGNT--LHKQHRWIRP 525
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 125/318 (39%), Gaps = 24/318 (7%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL P ++ ++ A G+ + +LK AG++P L +FG G
Sbjct: 124 GLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHEDA 183
Query: 159 LEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
++ Y A+ L+ + ++ A VF + I+ MI
Sbjct: 184 AATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQV 243
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
KA AL + M+ G + +L+ P A FE M+ E +
Sbjct: 244 YAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEEMQ--ESNCR 301
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
TY ++ Y++A + + ELL M + R NV Y+ L++ + K +
Sbjct: 302 FGESTYITMLNVYSKAGFHSAAE---ELLAKMRQLGFR--RNVVAYSTLIDMYGKVGKLQ 356
Query: 338 EAIRHFRAL-QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPV 396
EA R F + Q G +++N L +Y +A GRI + E L A KD++ V
Sbjct: 357 EATRLFSTMKQQGCKGNLIVYN-----TMLDMYGKA----GRIND-AERLMAELKDSKLV 406
Query: 397 PPRAMILSRKYRTLVSSW 414
P + Y TL++++
Sbjct: 407 PD-----TVTYTTLINAY 419
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 43/291 (14%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLI-- 143
N+ + +M AG+ P ++ L+ + G HE A + + +G P + TLI
Sbjct: 149 NETLKEMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHA 208
Query: 144 ------------------------------ALARLFGSKGLATKGLEILAAMEKINYDIR 173
+ +++ +A + L +L M++I
Sbjct: 209 FAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPN 268
Query: 174 Q-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
+ + ++ +R A K+F + R + Y M+ KAG HS A E+
Sbjct: 269 ELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYITMLNVYSKAGFHSAAEELLA 328
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+M G ++ L+ G + A F M+ + K + YN ++ Y +
Sbjct: 329 KMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMK--QQGCKGNLIVYNTMLDMYGK 386
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
A R+ D L+ + + +L P+ TY L+ + + E IR F
Sbjct: 387 A---GRINDAERLMAELKDS--KLVPDTVTYTTLINAYNRLGRFEECIRVF 432
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 10/175 (5%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAG-DHSNALEIAYE 233
A+ L+ R+ Y ++A KVF GL+ Y+ +I K G D + A EI E
Sbjct: 222 AFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDE 281
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M G FN LL+ G+ E A F M Y ++ D TYN ++ A +
Sbjct: 282 MLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLY--RGIEQDIFTYNTLLDAVCKG 339
Query: 294 ESYD-RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
D Q ++E+ K + PNV TY+ +++ + K + EA+ F ++
Sbjct: 340 GQMDLAFQIMSEM------PRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMK 388
Score = 42.7 bits (99), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 126/317 (39%), Gaps = 65/317 (20%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
D R ++ +M+ G+ P +F+ L+ G E A + L G+ T
Sbjct: 271 DFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYN 330
Query: 144 ALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVF--LRG 199
L G +I++ M + I ++ + +++ + L++A +F ++
Sbjct: 331 TLLDAVCKGGQMDLAFQIMSEMPRKHIMPNV-VTYSTVIDGYAKAGRLDEALNLFNEMKF 389
Query: 200 AKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
A GL D + Y+ +++ K G AL + EME++G
Sbjct: 390 ASIGL---DRVSYNTLLSIYAKLGRFEEALNVCKEMESSG-------------------- 426
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+K D TYN ++ Y + Y+ V+ V E + +R+ P
Sbjct: 427 -----------------IKKDAVTYNALLGGYGKQGKYEEVKRVFEEM-----KAERIFP 464
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRALCR 375
N+ TY+ L++ ++K EA+ FR + + G K VL+ S + ALC+
Sbjct: 465 NLLTYSTLIDVYSKGGLYQEAMEVFREFK--KAGLKADVVLY---------SALIDALCK 513
Query: 376 EGRIIELLEALEAMAKD 392
G + + L+ M K+
Sbjct: 514 NGLVESAVSFLDEMTKE 530
>gi|111154024|dbj|BAF02664.1| pentatricopeptide repeat protein [Physcomitrella patens]
gi|111185880|dbj|BAF02672.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 531
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 23/260 (8%)
Query: 97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156
AGL P S+ L+ + + R P + L +G+ GL
Sbjct: 173 GAGLKPDVVSYTALIQGFGKLKSYNKVTDVFSRMQRNRCPPDLKLCTVLISTYGNGGL-- 230
Query: 157 KGLEILA--AMEKINYDIRQ----AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
+LA AM+ Q A+ LV + E+A K G+ D
Sbjct: 231 ---PVLAESAMQYAQAQGLQPDAIAYTALVHAYAQEGLWEEAEKTLSDMLDVGI-VDDRP 286
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y ++A KAG N +I M+A+G A+T +N L++ + PE A A + M+
Sbjct: 287 YAALVAAYGKAGLTDNVNKILETMKASGVEASTTLYNTLINIHSKAEAPEKARAVLQLMQ 346
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVE 328
D + D TY V++AY+R ++ +AE M+ + KR +QP +Y +L+
Sbjct: 347 --ADGCQCDEITYTSVMEAYSR----NKQPLMAE---SMMGEMKRAGIQPGPVSYGVLIS 397
Query: 329 CFTKYCAVTEAIRHFRALQN 348
+ + + +A R RA+QN
Sbjct: 398 AYCRAGRLGDAERILRAMQN 417
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 120/316 (37%), Gaps = 71/316 (22%)
Query: 60 VVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGD 119
++S G + E MQ+A+ A GL P ++ LV AY G
Sbjct: 221 LISTYGNGGLPVLAESAMQYAQ---------------AQGLQPDAIAYTALVHAYAQEGL 265
Query: 120 HEGAMHSLKRELSAGV---RPLHETLIALARLFGSKGLATKGLEILAAMEK--------- 167
E A +L L G+ RP AL +G GL +IL M+
Sbjct: 266 WEEAEKTLSDMLDVGIVDDRPYA----ALVAAYGKAGLTDNVNKILETMKASGVEASTTL 321
Query: 168 ----IN--------------YDIRQA---------WLILVEELVRNKYLEDANKVFLRGA 200
IN + QA + ++E RNK A +
Sbjct: 322 YNTLINIHSKAEAPEKARAVLQLMQADGCQCDEITYTSVMEAYSRNKQPLMAESMMGEMK 381
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ G++ Y ++I+ C+AG +A I M+ A T +N ++S A+ +
Sbjct: 382 RAGIQPGPVSYGVLISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMISGYASAKMRS 441
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV---AELLGMMVEDHKRLQ 317
A F+ M+ + ++PD T+N +I Y ++ + +D + LG +
Sbjct: 442 QAERMFQTMQ--DCGLRPDAVTFNTLISMYIKSRKRKQAEDCYIRMQQLG--------CK 491
Query: 318 PNVKTYALLVECFTKY 333
PN TY +L++ +T Y
Sbjct: 492 PNAVTYKILLKAYTDY 507
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 130/330 (39%), Gaps = 45/330 (13%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P +F L+ L+ A+ + R + G +P T + +G
Sbjct: 143 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 202
Query: 155 ATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
L +L ME KI D+ + +++ L + ++++DA +F G+R Y
Sbjct: 203 TDLALNLLNKMEAAKIEADV-VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYS 261
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I+ C G S+A ++ +M FN L+ + E F E +
Sbjct: 262 SLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF----VKEGKFVEAEKLY-- 315
Query: 273 EDYMK----PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+D +K PD TYN ++ + +DR+ ++ MV K P+V TY L++
Sbjct: 316 DDMIKRSIDPDIFTYNSLVNGFCM---HDRLDKAKQMFEFMVS--KDCFPDVVTYNTLIK 370
Query: 329 CFTKYCAVTEAIRHFRALQN---------YEGGTKVLHNEGNF-------------GDP- 365
F K V + FR + + Y + L ++G+ G P
Sbjct: 371 GFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP 430
Query: 366 ----LSLYLRALCREGRIIELLEALEAMAK 391
S+ L LC G++ + LE + M K
Sbjct: 431 DIMTYSILLDGLCNNGKLEKALEVFDYMQK 460
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 12/240 (5%)
Query: 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEIL 162
G +++ L+ + A+ L + + G P TL +L + + + ++
Sbjct: 81 GLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV 140
Query: 163 AAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKA 221
M ++ Y + L+ L + +A + R + G + Y +++ CK
Sbjct: 141 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 200
Query: 222 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENMEYGEDYMKPD 279
GD AL + +MEAA A FN ++ + C V A F+ ME ++P+
Sbjct: 201 GDTDLALNLLNKMEAAKIEADVVIFNTII--DSLCKYRHVDDALNLFKEME--TKGIRPN 256
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
TY+ +I SY R D ++LL M+E K++ PN+ T+ L++ F K EA
Sbjct: 257 VVTYSSLISCLC---SYGRWSDASQLLSDMIE--KKINPNLVTFNALIDAFVKEGKFVEA 311
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ IL++ L N LE A +VF K ++ IY MI CKAG + ++
Sbjct: 433 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 492
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+ G +N ++S + + + A+A + M+ ED P++ TYN +I+A+ R
Sbjct: 493 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK--EDGPLPNSGTYNTLIRAHLR 549
>gi|387219093|gb|AFJ69255.1| hypothetical protein NGATSA_2006000, partial [Nannochloropsis
gaditana CCMP526]
Length = 479
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 105/239 (43%), Gaps = 8/239 (3%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
L P +++ L+ AYT GD GA LKR + AG+ P T L F ++
Sbjct: 26 LKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAAE 85
Query: 160 EILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+++A M++ + D+ +L + + A +V R A+ G+ Y+ +I
Sbjct: 86 KMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEG 145
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
KAG+ A ++ M G T+ ++ L+ A + M+ ++ ++
Sbjct: 146 YVKAGEMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMK--KEGVQ 203
Query: 278 PDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVED---HKRLQPNVKTYALLVECFTK 332
+ + + ++ AY + + + V A +L + E+ K +PNV TY+ L+ + +
Sbjct: 204 ANVQVFTTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYAR 262
Score = 41.2 bits (95), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 93/258 (36%), Gaps = 44/258 (17%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV+ M GL+P ++ L+ AYT D GA L R GV+ + L +
Sbjct: 157 DVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQANVQVFTTLMNAY 216
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD- 208
+G +LA M L + EE GG + +
Sbjct: 217 AKRGDVEGAEGVLARM-----------LAVAEE-----------------EGGGSKDCEP 248
Query: 209 --EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y ++ +AG + A + M AAG F L++ + G PE A
Sbjct: 249 NVHTYSTLMNVYARAGLAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVL 308
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRA---------ESYDRVQDVAELLGMMVEDHKRLQ 317
+ ME + P+ TYN ++ A +R RV V + + L+
Sbjct: 309 KRMEAAG--VSPNVLTYNTLLSATSRMGLREGEVEERRAKRVLQVYDTMRRSAGKGGGLE 366
Query: 318 --PNVKTYALLVECFTKY 333
P+ TY +L+ C ++
Sbjct: 367 KAPDEATYTVLLTCLLRF 384
>gi|218191860|gb|EEC74287.1| hypothetical protein OsI_09537 [Oryza sativa Indica Group]
Length = 689
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 15/211 (7%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L +++ A KVF + + G+ +Y+ M+ KAGD + A + M+AAG
Sbjct: 243 LLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESLMTRMDAAG 302
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
F FN +++ G+ A E ME +K D T+N +I + R
Sbjct: 303 VPLDRFSFNTVIALYCRKGMQYEAMCVRERME--NQGVKADVVTWNSLIHGLCKER---R 357
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
V++ ++LL M + P+ TY LV+ + + + EA++ L+ +L
Sbjct: 358 VKEASQLLREMAM--AGVAPDHVTYTTLVDGYCRAGDLEEAVK----LRGEMEAMGMLPG 411
Query: 359 EGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+ + LR LC +G++ E+ L M
Sbjct: 412 VATY----NAILRKLCEDGKMKEVNVLLNEM 438
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 108/258 (41%), Gaps = 16/258 (6%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV---R 136
A++R V M AG++ ++ ++ GD A + R +AGV R
Sbjct: 248 AKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESLMTRMDAAGVPLDR 307
Query: 137 PLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANK 194
T+IAL + KG+ + + + ME + D+ W L+ L + + +++A++
Sbjct: 308 FSFNTVIAL---YCRKGMQYEAMCVRERMENQGVKADV-VTWNSLIHGLCKERRVKEASQ 363
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+ A G+ Y ++ C+AGD A+++ EMEA G + +N +L +
Sbjct: 364 LLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAIL--RK 421
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
C ++ E E ++ D T N +I AY + V M+E
Sbjct: 422 LCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKR---RMMES-- 476
Query: 315 RLQPNVKTYALLVECFTK 332
LQ + TY LV F K
Sbjct: 477 GLQLDQFTYKALVHGFCK 494
>gi|297804554|ref|XP_002870161.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
lyrata]
gi|297315997|gb|EFH46420.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
lyrata]
Length = 702
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 110/272 (40%), Gaps = 12/272 (4%)
Query: 76 LMQHARNRDAP-RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG 134
++ AR P R + M + G P + ++ AY G+ E A+ R +
Sbjct: 216 IISCARQSGVPKRAVEWFEKMSSFGCEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEK 275
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI---LVEELVRNKYLED 191
R T L R++G G L I M+ + ++ +I L++ + R K
Sbjct: 276 WRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALG--VKPNLVIYNRLLDSMGRAKRPWQ 333
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A + G Y +I +A +AL I EM+ G T +N LLS
Sbjct: 334 AKIIHKDLISNGFTPNWSTYAALIRAYGRARYGDDALVIYREMKEKGLSLTVILYNTLLS 393
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
A G + AF F++M+ E PD+ T++ +I Y+ + RV + L M E
Sbjct: 394 MCADIGYVDEAFEIFQDMKNCET-CDPDSWTFSSLITVYSCS---GRVSEAEAALLQMRE 449
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+P + +++C+ K V + +R F
Sbjct: 450 --AGFEPTLFVLTSVIQCYGKAKQVDDVVRTF 479
Score = 43.1 bits (100), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 770 WEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLY 829
W+ ++ I +I G TP A +IRA RA L I ++ G LY
Sbjct: 332 WQAKI---IHKDLISNGFTPNWSTYAALIRAYGRARYGDDALVIYREMKEKGLSLTVILY 388
Query: 830 DEIISLCLDLGELDAAVAIVADMETTGIAVPDQ-TLDRVIT 869
+ ++S+C D+G +D A I DM+ PD T +IT
Sbjct: 389 NTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLIT 429
>gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 702
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 110/272 (40%), Gaps = 12/272 (4%)
Query: 76 LMQHARNRDAP-RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG 134
++ AR P R + M + G P + ++ AY G+ + A+ R +
Sbjct: 216 IISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEK 275
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI---LVEELVRNKYLED 191
R T L R++G G L I M+ + ++ +I L++ + R K
Sbjct: 276 WRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALG--VKPNLVIYNRLIDSMGRAKRPWQ 333
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A ++ G Y ++ +A +AL I EM+ G T +N LLS
Sbjct: 334 AKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLS 393
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
A G + AF F++M+ E PD+ T++ +I Y + RV + L M E
Sbjct: 394 MCADIGYVDEAFEIFQDMKNCET-CDPDSWTFSSLITVYACS---GRVSEAEAALLQMRE 449
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+P + +++C+ K V + +R F
Sbjct: 450 --AGFEPTLFVLTSVIQCYGKAKQVDDVVRTF 479
Score = 43.1 bits (100), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 770 WEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLY 829
W+ ++ I +I G TP A ++RA RA L I ++ G LY
Sbjct: 332 WQAKI---IYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILY 388
Query: 830 DEIISLCLDLGELDAAVAIVADMETTGIAVPDQ-TLDRVIT 869
+ ++S+C D+G +D A I DM+ PD T +IT
Sbjct: 389 NTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLIT 429
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 130/330 (39%), Gaps = 45/330 (13%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P +F L+ L+ A+ + R + G +P T + +G
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 155 ATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
L +L ME KI D+ + +++ L + ++++DA +F G+R Y
Sbjct: 241 TDLALNLLNKMEAAKIEADV-VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYS 299
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I+ C G S+A ++ +M FN L+ + E F E +
Sbjct: 300 SLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF----VKEGKFVEAEKLY-- 353
Query: 273 EDYMK----PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+D +K PD TYN ++ + +DR+ ++ MV K P+V TY L++
Sbjct: 354 DDMIKRSIDPDIFTYNSLVNGFCM---HDRLDKAKQMFEFMVS--KDCFPDVVTYNTLIK 408
Query: 329 CFTKYCAVTEAIRHFRALQN---------YEGGTKVLHNEGNF-------------GDP- 365
F K V + FR + + Y + L ++G+ G P
Sbjct: 409 GFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP 468
Query: 366 ----LSLYLRALCREGRIIELLEALEAMAK 391
S+ L LC G++ + LE + M K
Sbjct: 469 DIMTYSILLDGLCNNGKLEKALEVFDYMQK 498
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 12/240 (5%)
Query: 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEIL 162
G +++ L+ + A+ L + + G P TL +L + + + ++
Sbjct: 119 GLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV 178
Query: 163 AAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKA 221
M ++ Y + L+ L + +A + R + G + Y +++ CK
Sbjct: 179 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 238
Query: 222 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENMEYGEDYMKPD 279
GD AL + +MEAA A FN ++ + C V A F+ ME ++P+
Sbjct: 239 GDTDLALNLLNKMEAAKIEADVVIFNTII--DSLCKYRHVDDALNLFKEME--TKGIRPN 294
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
TY+ +I SY R D ++LL M+E K++ PN+ T+ L++ F K EA
Sbjct: 295 VVTYSSLISCLC---SYGRWSDASQLLSDMIE--KKINPNLVTFNALIDAFVKEGKFVEA 349
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ IL++ L N LE A +VF K ++ IY MI CKAG + ++
Sbjct: 471 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 530
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+ G +N ++S + + + A+A + M+ ED P++ TYN +I+A+ R
Sbjct: 531 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK--EDGPLPNSGTYNTLIRAHLR 587
>gi|357116849|ref|XP_003560189.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Brachypodium distachyon]
Length = 737
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 82/212 (38%), Gaps = 36/212 (16%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ D M A G+ P S+ L+ AY +NG +E A + ++P ET AL
Sbjct: 478 KAEDAFLRMKADGIKPTSSSYTSLLCAYAVNGQYEKAHITYVDMKKERLKPSLETYTALL 537
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+F G K +E W ++ E V GG R
Sbjct: 538 DIFRRAGDTDKLME--------------TWRSMINEKV-----------------GGTRV 566
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
T + +++ K G + A ++ YE G TT +N L++ A G
Sbjct: 567 T---FHMVLDGLAKYGLYVQARDVIYEFGNIGLPPTTMTYNILMNTYAKGGQHYKLPQLL 623
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ M E +KPD+ TY+ +I AY R + +
Sbjct: 624 KEMSALE--LKPDSVTYSTMIYAYARVRDFSK 653
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A + F R + G++ + ++ +I C G AL I EME G + T +N +++
Sbjct: 338 AWEFFQRMNRKGVKWSLDVSASLIKMFCDEGLKKEALIIQSEMERRGIPSNTSIYNEIVN 397
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ-DVAELLGMMV 310
C E A F M+ E +KP TYN ++ AY+R R+Q +V E L + +
Sbjct: 398 AYCKCSQIEEAEGLFVEMK--EKGLKPTIVTYNILMDAYSR-----RLQPEVVESLLLEM 450
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTE 338
D LQPN ++Y L+ + + ++E
Sbjct: 451 HDLG-LQPNARSYNCLISAYGRQKKMSE 477
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 74/379 (19%), Positives = 152/379 (40%), Gaps = 54/379 (14%)
Query: 121 EGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK----INYDIRQAW 176
+ A +R GV+ + +L ++F +GL + L I + ME+ N I
Sbjct: 336 KAAWEFFQRMNRKGVKWSLDVSASLIKMFCDEGLKKEALIIQSEMERRGIPSNTSIYNE- 394
Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
+V + +E+A +F+ + GL+ T Y++++ + + EM
Sbjct: 395 --IVNAYCKCSQIEEAEGLFVEMKEKGLKPTIVTYNILMDAYSRRLQPEVVESLLLEMHD 452
Query: 237 AGRMATTFHFNHLLSCQA-TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
G +N L+S + E A F M+ D +KP + +Y ++ AY
Sbjct: 453 LGLQPNARSYNCLISAYGRQKKMSEKAEDAFLRMK--ADGIKPTSSSYTSLLCAYAVNGQ 510
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE-GGTK 354
Y++ + + +RL+P+++TY L++ F + + + +R++ N + GGT+
Sbjct: 511 YEKAH-----ITYVDMKKERLKPSLETYTALLDIFRRAGDTDKLMETWRSMINEKVGGTR 565
Query: 355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
V + + L L + G ++ + + N +PP M Y L++++
Sbjct: 566 VTFH---------MVLDGLAKYGLYVQARDVIYEFG--NIGLPPTTMT----YNILMNTY 610
Query: 415 IEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFK 474
++GG + + + L PD+V YS + +
Sbjct: 611 ---------------------AKGGQHYKLPQLLKEMSALELKPDSV--TYSTMIYAYAR 647
Query: 475 QRCLEDGKKYHRKLLRTLQ 493
R YH++++R+ Q
Sbjct: 648 VRDFSKAFYYHKQMVRSGQ 666
>gi|413948245|gb|AFW80894.1| hypothetical protein ZEAMMB73_865420 [Zea mays]
Length = 573
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 100/267 (37%), Gaps = 43/267 (16%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P R+F+ LV A D E A L+ G P T L + KG L +
Sbjct: 206 PDARTFNILVAALCRGEDAERAYGFLEELEEQGFEPDVVTYNTLLAGYCRKGRLQDALHL 265
Query: 162 LAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC 219
M ++ D+ + IL++ L + L+DA ++F R GGLR Y ++I C
Sbjct: 266 FDVMPHRRVPPDL-VSHTILMDGLCKAWRLKDARRMFDRMVHGGLRPDAVAYSVLITGYC 324
Query: 220 KAGDHSNALEIAYEMEAAGRMATTF----------HFNHLLSCQATCG--------IPEV 261
G A + EM +G + F F LL+C IP
Sbjct: 325 NEGQLKEARSLLMEMAGSGLLDIAFALRVVVQGHVKFGKLLTCLNMVAPLRKYGIVIPSQ 384
Query: 262 AFATF-----ENMEYG----------EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
+++ E+M ED P + YN ++ + R ++ DV
Sbjct: 385 SYSCLIGALCEDMRPNAARGLLQWMIEDGHCPSLQMYNMIVDCFCRCDNPKEALDVK--- 441
Query: 307 GMMVEDHKR-LQPNVKTYALLVECFTK 332
VE R ++PN TY L+ C +
Sbjct: 442 ---VEMTSREVKPNYNTYQTLIICLCR 465
>gi|449445409|ref|XP_004140465.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Cucumis sativus]
gi|449518107|ref|XP_004166085.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Cucumis sativus]
Length = 578
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 17/206 (8%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A +L+ L +++ + K + + + G+ IY+++I CK+GD A ++ E
Sbjct: 156 HACTVLLNSLAKDRLTDTVWKSYKKMIRVGVVPNIHIYNVLIHACCKSGDVEKAEQLVCE 215
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
ME + +N L+S + + A + ME + PD TYN +I + +
Sbjct: 216 MELKSVFPDLYTYNTLISLYSRKSLHYEALCVQDRMERAG--VSPDIVTYNSLIYGFCKE 273
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
++++ +L + K + PN TY L++ + + EA+R + ++
Sbjct: 274 ---GKMREAVKLF----REIKDVSPNHVTYTTLIDGYCRVNDFEEALRLCKVME-----A 321
Query: 354 KVLHNEGNFGDPLSLYLRALCREGRI 379
K LH + + LR LC EGRI
Sbjct: 322 KGLHLGVATYNSV---LRKLCEEGRI 344
>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
Length = 668
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 119/271 (43%), Gaps = 19/271 (7%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
DA + ++ D+ + L P F L+ A+ + A+ L + G+ P +
Sbjct: 208 DAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVT 267
Query: 144 ALARLFGSKGLATKG----LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
AL G+ G + LE A E I R A+ L++ VR L++A +V
Sbjct: 268 ALISALGTAGRVAEAEALFLEFFLAGE-IKPRTR-AYNALLKGYVRIASLKNAEQVLDEM 325
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
++ G+ + Y L++ +AG +A + EMEA G +++ F+ +L+ G
Sbjct: 326 SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDW 385
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
+ AFA M+ ++PD YN +I + + Y+ + + M E+ ++P+
Sbjct: 386 QKAFAVLREMQ--ASGVRPDRHFYNVMIDTFGK---YNCLGHAMDAFNKMREEG--IEPD 438
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
V T+ L++ K RH RA + +E
Sbjct: 439 VVTWNTLIDAHCK------GGRHDRAAELFE 463
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 116/309 (37%), Gaps = 21/309 (6%)
Query: 52 SLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDA-----------PRVNDVIYDMIAAGL 100
S L T G V A L E+ R +A V+ +M G+
Sbjct: 271 SALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGV 330
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE 160
+P ++ LV AYT G E A LK + GV+P + F +G K
Sbjct: 331 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFA 390
Query: 161 ILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L M+ + D R + ++++ + L A F + + G+ ++ +I
Sbjct: 391 VLREMQASGVRPD-RHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAH 449
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
CK G H A E+ EM + T +N +++ E A M+ E + P
Sbjct: 450 CKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMK--EQGLVP 507
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
+ TY ++ Y R+ Y D E + L+P+ Y LV + +
Sbjct: 508 NIITYTTLVDVYGRSGRYKEAIDCIEAM-----KADGLKPSPTMYHALVNAYAQRGLADH 562
Query: 339 AIRHFRALQ 347
A+ +A++
Sbjct: 563 ALNVVKAMK 571
>gi|222624094|gb|EEE58226.1| hypothetical protein OsJ_09197 [Oryza sativa Japonica Group]
Length = 424
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 116/285 (40%), Gaps = 23/285 (8%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT-K 157
G SP + H L+V + AM +S PL E A A L S+G A
Sbjct: 106 GFSPSAHA-HNLLVENAGSLADYRAMSRAMESMSTRRVPLTER--AFAFLNTSQGSARDT 162
Query: 158 GLEILAAMEKINYDIRQAWLI-LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+ ILA ++++ R + + LV+ L + A V A+G Y+ +IA
Sbjct: 163 AIAILATLDEVGGPCRASGVFSLVKALASIGEFDAAMSVIQETARGA-----RYYNALIA 217
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
CK GD A E+ EM +G + +N+LL C G A E ME E
Sbjct: 218 VKCKTGDFHGAREVFDEMRRSGFGPNSNSWNYLLGCLLKNGRVAEACELVEAMERSEHND 277
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
P++ TY I AY ++ R+ +L M + +L P + + ++ + +
Sbjct: 278 IPNSLTYE--ILAYHACKA-GRMDSAMRILDQMFLE--KLTPRITIHTAFIKGYLYAGRI 332
Query: 337 TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381
+A R+ A+ + + SL + LC+ G I++
Sbjct: 333 DDACRYVSAMST--------RDRRSVNRNYSLLAKLLCKAGMIVD 369
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 12/243 (4%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M A G SP +++ L+ AY G E A+ + + G++P T L F
Sbjct: 321 VLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFE 380
Query: 151 SKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G +++ M + +I ++ R K+ E KVF
Sbjct: 381 KAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAE-MMKVFDDIKLCNCSPDI 439
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
++ ++A + G S I EM+ AG +A FN L+S + CG + A A +++
Sbjct: 440 VTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKS 499
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVEDHKRLQPNVKTYALLV 327
M E + PD TYN V+ A R +++ + V AE+ ED R +PN +Y+ L+
Sbjct: 500 ML--EAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEM-----ED-GRCKPNELSYSSLL 551
Query: 328 ECF 330
+
Sbjct: 552 HAY 554
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 95/249 (38%), Gaps = 34/249 (13%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V ++ M + G++P +++ L+ +E A+H ++ G P T AL
Sbjct: 248 VTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLD 307
Query: 148 LFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+FG + +++L ME + + L+ + LE+A + + G++
Sbjct: 308 VFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKP 367
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y +++ KAG A+++ EM A G FN L+ G F
Sbjct: 368 DVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVF 427
Query: 267 ENME-----------------YGEDYMKPDT----------------ETYNCVIQAYTRA 293
++++ +G++ M +T+N +I AY+R
Sbjct: 428 DDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRC 487
Query: 294 ESYDRVQDV 302
S+D+ V
Sbjct: 488 GSFDQAMAV 496
Score = 40.4 bits (93), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 106/263 (40%), Gaps = 8/263 (3%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+V+ + +M AG +F+ L+ AY+ G + AM K L AGV P T A+
Sbjct: 457 QVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVL 516
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
GL + ++LA ME + ++ L+ K +E N G +
Sbjct: 517 AALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVE 576
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+ ++ + K+ E+ G N +LS + A
Sbjct: 577 THAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEI 636
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
M E P TYN ++ Y+R+E++ + + E+L ++E K ++P+ +Y
Sbjct: 637 LNFMH--ETRFTPSLTTYNSLMYMYSRSENFQKSE---EILREVLE--KGMKPDRISYNT 689
Query: 326 LVECFTKYCAVTEAIRHFRALQN 348
++ + + + EA R F +++
Sbjct: 690 VIYAYCRNGRMKEASRIFSEMKD 712
>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 870
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 6/158 (3%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ L+ L + LE+A K F+ L YD + CK G S+AL + +M
Sbjct: 527 TYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDM 586
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
E G T +N L+ + G + + M E + PD TYN +I
Sbjct: 587 ERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMR--ERGIHPDICTYNNMINCLCEG- 643
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ +D LL M+ D + PNV ++ +L++ F K
Sbjct: 644 --GKTKDATSLLHEML-DKGVVSPNVSSFKILIKAFCK 678
Score = 40.0 bits (92), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 27/222 (12%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L++ L + L+ A ++F + ++ G + +++ C+AG ALE
Sbjct: 156 LLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTKQALEF-----VD 210
Query: 238 GRMATTFH---FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
G+M + +N L+S + + A E M E + PD T+N I A RA
Sbjct: 211 GKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMT--EKGLLPDVVTFNSRISALCRA- 267
Query: 295 SYDRVQDVAELLGMMVEDHKRL--QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
+V + + + M D + +PNV T+ L+++ F + + EA R+L
Sbjct: 268 --GKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEA----RSL------ 315
Query: 353 TKVLHNEGNFG--DPLSLYLRALCREGRIIELLEALEAMAKD 392
+ + GNF + + +L L R G+++E L+ M ++
Sbjct: 316 VETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVEN 357
>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
Length = 820
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 140/340 (41%), Gaps = 36/340 (10%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R + A ++ +M +GL P + +V AY G GA+ + G P
Sbjct: 276 CREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNV 335
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFL 197
T A+ + F + G K + +L M + D+ L++ + + + ++ A ++
Sbjct: 336 WTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCI-DGHIGSAFRLLR 394
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
GL A Y+++I CK G A + +E G + FN +++ G
Sbjct: 395 LMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAG 454
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE-SYDRVQDVAELLGMMVEDHKRL 316
+VA ENM Y PDT TY+ I+ + + S + + + E+L K +
Sbjct: 455 KFDVACTFLENM-ISAGY-APDTYTYSPFIENLCKTKGSQEGLFFIDEML------QKDV 506
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV---LHNEGNFGDPLSLY--LR 371
+P+ Y +++ R F +NY T++ + ++G D ++ +R
Sbjct: 507 KPSTVNYTIVIN------------RLFNE-RNYGLATRIWGQMVSQGCSPDVVTYTTSVR 553
Query: 372 ALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV 411
A C EGR+ E + M K R ++ + Y TL+
Sbjct: 554 AYCNEGRLDEAENVVTEMKK------CRTIVDAMAYNTLI 587
>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 807
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 112/302 (37%), Gaps = 49/302 (16%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ R + ++ M+ G+ P +++ L+ Y+ G + A+ K S GV P
Sbjct: 257 CKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNT 316
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
T G + E +M + + I+ + + Y
Sbjct: 317 VTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLN----IISYSTLLHGY----------A 362
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
G L +++LM+ + H FN L++ A CG+
Sbjct: 363 TAGCLVDMSNLFNLMVRDGIVPNQHV--------------------FNILVNGYAKCGMV 402
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
A FE+M+ + + PD TY VI A+ R S D D + M++ K ++PN
Sbjct: 403 REAMFIFEDMQ--KRGLNPDVLTYLAVIHAFCRMGSMD---DAMDKFNHMID--KGVEPN 455
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 379
Y L++ F + + +A ++N G +L + + LC+EGR+
Sbjct: 456 FAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCIL--------SFASLINHLCKEGRV 507
Query: 380 IE 381
E
Sbjct: 508 FE 509
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 104/264 (39%), Gaps = 28/264 (10%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALARLFG 150
DM GL+P ++ ++ A+ G + AM + GV P +++ LI
Sbjct: 411 DMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLI------- 463
Query: 151 SKGLATKGLEILAAMEKINYDIRQ--------AWLILVEELVRNKYLEDANKVFLRGAKG 202
+G T G L E++ Y+IR ++ L+ L + + +A ++F +
Sbjct: 464 -QGFCTHG--DLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRT 520
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G +A I+ +I C G S A + M + G + L++ G +
Sbjct: 521 GEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDG 580
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F + + +KP T TY ++ A R E+ M+E + + T
Sbjct: 581 LILFRELLH--KGVKPTTFTYGIILDGLFHA---GRTAAAKEMFQEMIES--GIAVTIPT 633
Query: 323 YALLVECFTKYCAVTEAIRHFRAL 346
Y++L+ + EAI F+ L
Sbjct: 634 YSILLTGLCRNNCTEEAITVFQKL 657
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 6/227 (2%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I + L + R RD V ++ +M AG P + L++ YT G+ + +
Sbjct: 892 IMISLLCHNKRFRD---VELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSI 948
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYL 189
L AG+ P +T L ++ +G +L M K + +++ IL+ + K
Sbjct: 949 LEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLW 1008
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
E A+ +F G R IY +M+ A +HS A + M+ G T + L
Sbjct: 1009 EQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHIL 1068
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
++ T G P+ A +++ ++ T Y+ V+ AY R Y
Sbjct: 1069 MTSYGTSGHPDEAEKVLNSLKSSN--LEISTLPYSTVLDAYLRNRDY 1113
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 64/331 (19%), Positives = 123/331 (37%), Gaps = 33/331 (9%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H R A + +++ G P +++ L+ A+ GD E + + AG R
Sbjct: 338 HGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKD 397
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFL 197
T + ++G G L + M I + +LV+ L + + +A KV
Sbjct: 398 GITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLE 457
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
A GL+ T + +I K+G +A M +G + +L A
Sbjct: 458 EMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSD 517
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+ M +D KPD Y ++ A + +D ++ V + + + E +
Sbjct: 518 ETRKLMVLYRAMI--KDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFE----MN 571
Query: 318 PNVKTYALL-VECFT-------KYC---------AVTEAIRHFRALQNYEGGTKVLH--- 357
P V + L+ EC + + C ++ + + + +E G +L
Sbjct: 572 PLVISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIR 631
Query: 358 ----NEGNFGDPLSLYLRALCREGRIIELLE 384
N N S+ L LC+ G+I++ ++
Sbjct: 632 QHVPNSHNLISECSIML--LCKNGKIVDAIQ 660
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A VFLR A+ G AT ++++ M+ ++G +A ++ M FN L++
Sbjct: 207 AEDVFLRFAREG--ATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLIN 264
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
+A G A E + ++PD TYN +I A ++ + D D + M+
Sbjct: 265 ARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLD---DAVAVFEEMIA 321
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
R P++ TY +V + EA F+ L
Sbjct: 322 SECR--PDLWTYNAMVSVHGRCGKAQEAELMFKEL 354
>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19440, chloroplastic; Flags: Precursor
Length = 838
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 142/341 (41%), Gaps = 35/341 (10%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M++ GLS +++ L+ Y NG + A LK LS G + ++ L S +
Sbjct: 404 MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLM 463
Query: 155 ATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
L + M N L L+ L ++ A +++ + G +
Sbjct: 464 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 523
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENMEY 271
++ C+AG A I E+ G + +N L+S CG ++ AF + M
Sbjct: 524 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS--GCCGKKKLDEAFMFLDEMV- 580
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVEC 329
+ +KPD TY+ +I + ++V++ + +D KR + P+V TY+++++
Sbjct: 581 -KRGLKPDNYTYSILICGLF---NMNKVEEAIQFW----DDCKRNGMLPDVYTYSVMIDG 632
Query: 330 FTKYCAVTEAIRHFRAL--QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
K E F + +N + T V++N +RA CR GR+ LE E
Sbjct: 633 CCKAERTEEGQEFFDEMMSKNVQPNT-VVYNH---------LIRAYCRSGRLSMALELRE 682
Query: 388 AMAKDNQPVPPRAMILSRKYRTLVSSW-IEPLQEEAELGYE 427
M ++ + P S Y +L+ I EEA+L +E
Sbjct: 683 DM--KHKGISPN----SATYTSLIKGMSIISRVEEAKLLFE 717
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED--CKAGDHSNALEIAYEME 235
IL+ LVR + + F KG + ++Y A + CK G A+++ +ME
Sbjct: 244 ILLTSLVRANEFQKCCEAFDVVCKG---VSPDVYLFTTAINAFCKGGKVEEAVKLFSKME 300
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
AG FN ++ CG + AF E M E M+P TY+ +++ TRA+
Sbjct: 301 EAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMV--ERGMEPTLITYSILVKGLTRAK- 357
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
R+ D +L M + K PNV Y L++ F + ++ +AI
Sbjct: 358 --RIGDAYFVLKEMTK--KGFPPNVIVYNNLIDSFIEAGSLNKAI 398
>gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana]
Length = 702
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 110/272 (40%), Gaps = 12/272 (4%)
Query: 76 LMQHARNRDAP-RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG 134
++ AR P R + M + G P + ++ AY G+ + A+ R +
Sbjct: 216 IISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEK 275
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI---LVEELVRNKYLED 191
R T L R++G G L I M+ + ++ +I L++ + R K
Sbjct: 276 WRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALG--VKPNLVIYNRLIDSMGRAKRPWQ 333
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A ++ G Y ++ +A +AL I EM+ G T +N LLS
Sbjct: 334 AKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLS 393
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
A G + AF F++M+ E PD+ T++ +I Y + RV + L M E
Sbjct: 394 MCADIGYVDEAFEIFQDMKNCET-CDPDSWTFSSLITVYACS---GRVSEAEAALLQMRE 449
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+P + +++C+ K V + +R F
Sbjct: 450 --AGFEPTLFVLTSVIQCYGKAKQVDDVVRTF 479
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 770 WEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLY 829
W+ ++ I +I G TP A ++RA RA L I ++ G LY
Sbjct: 332 WQAKI---IYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILY 388
Query: 830 DEIISLCLDLGELDAAVAIVADMETTGIAVPDQ-TLDRVIT 869
+ ++S+C D+G +D A I DM+ PD T +IT
Sbjct: 389 NTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLIT 429
>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
Length = 635
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 117/298 (39%), Gaps = 29/298 (9%)
Query: 47 QKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRS 106
QKH DS+ S V + + F + + + + + M +G P +
Sbjct: 120 QKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTST 179
Query: 107 FHGLVVAYTLNGDHEGAMHSLK-RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
F+ L+ Y + G+ E + L+ VRP T L R + +K K ++ M
Sbjct: 180 FNTLIKGYGIAGEPEESQKLLZLMSQDENVRPNLRTYNVLVRAWCNKXNIMKAWNVVYKM 239
Query: 166 -------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+ + Y+ + +N A + L ++ + ++I
Sbjct: 240 VASGLQPDAVTYN------TIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGY 293
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC----GIPEVAFATFENMEYGED 274
CK G AL+ Y M+ G FN L+ G+ EV E E+G
Sbjct: 294 CKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEV-LTLME--EFG-- 348
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+KPD T++ ++ A++ A D+ + E+ MV+ R+QP+ Y++L + + +
Sbjct: 349 -VKPDVITFSTIMNAWSAAGFMDKCR---EIFDDMVK--ARIQPDAHVYSILAKGYVR 400
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/297 (19%), Positives = 117/297 (39%), Gaps = 43/297 (14%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V+Y M+A+GL P +++ + AY NG+ A + ++ V+P T + +
Sbjct: 234 NVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGY 293
Query: 150 GSKGLATKGLEILAAM--------------------EKINYDIRQAWLILVEEL------ 183
+G + L+ + M + ++ D L L+EE
Sbjct: 294 CKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDV 353
Query: 184 -----VRNK-----YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ N +++ ++F K ++ +Y ++ +AG+ A EI
Sbjct: 354 ITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNA 413
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M +G F +++ + G E A FE M E + P+ +T+ +I Y A
Sbjct: 414 MIKSGFHPNVVMFTTIINGWCSAGRMEYAIKIFEKM--CECGIAPNLKTFETLIWGYGEA 471
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
+ ++V +++ + +QP T L+ E + EA R A++N E
Sbjct: 472 RQPWKSEEVLQIM-----EEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEE 523
>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 484
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 9/175 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
W+++++ + ++++ K+F + + G+ T + YD + + G + A +M
Sbjct: 83 WVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKML 142
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+ G T FN ++ G E A FE+M+ E + PD TYN +I Y R +
Sbjct: 143 SEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE--ISPDVITYNTMINGYYRVKK 200
Query: 296 YDRVQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+ + E+ G K ++PNV TY L++ + V +A+R ++ Y
Sbjct: 201 MEEAEKYFVEMKG------KNIEPNVVTYTTLIKGYVSVDQVDDALRLVEEMKGY 249
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 95/238 (39%), Gaps = 14/238 (5%)
Query: 108 HGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK 167
HGLV A G+ + A+ + + GV P L KG + +L M
Sbjct: 423 HGLVAA----GEVDVALTVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLH 478
Query: 168 INYDIRQAWL--ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
N + A++ LV+ +R+ L++A K+F G+ Y+ MI CK G +
Sbjct: 479 QNLSL-DAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMN 537
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
+AL M+ F ++ ++ A F M + KP+ TY
Sbjct: 538 DALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMV--KQKCKPNVVTYTS 595
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+I + R R + E + L+PNV TY +L+ CF K +++A F
Sbjct: 596 LINGFCRTGDSSRAEKTFEEM-----RSSGLKPNVVTYTILIGCFCKEGKISKACSFF 648
>gi|168024390|ref|XP_001764719.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684013|gb|EDQ70418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1020
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 14/209 (6%)
Query: 170 YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229
Y Q + +L+ K ++ A +V G +A Y +I+ KAG +
Sbjct: 303 YSTLQHYTMLLSVCCHAKDIDGALRVLALVESRGFKADCVFYTTLISACSKAGKVDLLFQ 362
Query: 230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
I +EM+ AG A F ++ A G AF + M + +KPD +N +I A
Sbjct: 363 ILHEMDVAGVEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKD--VKPDRVIFNTLINA 420
Query: 290 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA---- 345
+R + R DV L M + ++P+ TY L+ K V A+ +++
Sbjct: 421 CSRVGAVQRAFDV---LADMKSEATPVKPDHVTYGALISACAKGGEVGRALEVYQSMREN 477
Query: 346 -----LQNYEGGTKVLHNEGNFGDPLSLY 369
L Y +G+ L++Y
Sbjct: 478 DVKGFLACYTAAVHACSQKGDLDYALAIY 506
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 100/252 (39%), Gaps = 10/252 (3%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK--RELSAGVRP 137
AR P+ MI+ + P F+ L+ A + G + A L + + V+P
Sbjct: 387 ARAGQLPKAFGAYGIMISKDVKPDRVIFNTLINACSRVGAVQRAFDVLADMKSEATPVKP 446
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVF 196
H T AL G + LE+ +M + + + V + L+ A ++
Sbjct: 447 DHVTYGALISACAKGGEVGRALEVYQSMRENDVKGFLACYTAAVHACSQKGDLDYALAIY 506
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
K G++ + + ++ +GD A I M +G ++ L+ +
Sbjct: 507 DDLLKDGVKPDEVFFSALVDAAGHSGDVDKAFSILDIMRKSGMKPGAVVYSSLMGVCSNL 566
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G E +E + + ++P TYN ++ A A+ +DR V L +D R
Sbjct: 567 GEWEKGLEVYEGIRSSK--LRPTVSTYNALMTALCEAKQFDRALSVLNDL----KDAGR- 619
Query: 317 QPNVKTYALLVE 328
PN +Y++L++
Sbjct: 620 TPNQVSYSILLK 631
>gi|147742776|gb|ABQ50556.1| hypothetical protein [Brassica rapa]
Length = 348
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 7/154 (4%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LV L + +A + R + G + Y ++ CK+G+ +AL++ +ME
Sbjct: 192 LVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDLLRKMEDKK 251
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+N ++ G + A + F ME + +K D TYN +I + A +D
Sbjct: 252 VKPQVVTYNMIIDSLCKNGNYDEALSLFNEME--REGIKADVITYNSLIGGFCNAGRWD- 308
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
D A+LL M+ + + PNV T++ L++CF K
Sbjct: 309 --DGAQLLRDMIT--RNITPNVVTFSALIDCFVK 338
>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Brachypodium distachyon]
Length = 877
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 114/262 (43%), Gaps = 20/262 (7%)
Query: 89 NDVIYDMIAAGLSPGPRSF----HGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI- 143
++++ +M+ G +P +F HGLVVA G A+ L RE A + L + I
Sbjct: 454 SNLLVEMMERGHTPDVVTFGALIHGLVVA----GQVSEAL--LVREKMAARQLLPDANIY 507
Query: 144 --ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
++ L K L I +E+ + + + L++ +RN+ L++A K+F +
Sbjct: 508 NVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQ 567
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G+ Y+ MI C+ G + A+E M GR+ F + L+ A G
Sbjct: 568 KGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISG 627
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A + +M + +P+ Y+ +I Y + D + L G M + + L PNV
Sbjct: 628 ALSLLCDMM--KRRCQPNVVAYSSLINGYCKLGDTDAAEC---LFGSM--ESQGLFPNVI 680
Query: 322 TYALLVECFTKYCAVTEAIRHF 343
TY +L+ K V A +F
Sbjct: 681 TYTILIGSLFKKDKVVRAAMYF 702
>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
Length = 563
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 133/340 (39%), Gaps = 38/340 (11%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++D M AG+SP R F LVV G E L G + T + R
Sbjct: 60 VFDGMTRAGVSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLC 119
Query: 151 SKG-------LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
KG + LE +NY AW ++ L + +Y++ A V G
Sbjct: 120 EKGRFKDVSEFFRRMLETGTPPNVVNY---TAW---IDGLCKRRYVKQAFHVLEEMVGRG 173
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
L+ + +I CK G A + ++ + H + + C ++A
Sbjct: 174 LKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVH-TYTVMIGGYCREGKLAR 232
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
A + E +KP+T TY +I + + S+DR EL+ M ++ PN+ TY
Sbjct: 233 AEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDR---AFELMNKMKQEG--FLPNIYTY 287
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL--SLYLRALCREGRIIE 381
+++ F K + EA + R + ++G D + ++ + C++G I
Sbjct: 288 NAVIDGFCKKGKIQEAYKVLR----------MATSQGLKFDKITYTILITEHCKQGHITY 337
Query: 382 LLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEE 421
L+ + M +N P Y +L+S++ + Q E
Sbjct: 338 ALDLFDRMV-ENGCCPD-----IEAYTSLISTYCQQRQME 371
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 77/392 (19%), Positives = 144/392 (36%), Gaps = 72/392 (18%)
Query: 51 DSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGL 110
D+LL+ + + + + L + R +D V++ M+ G P ++
Sbjct: 93 DALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKD---VSEFFRRMLETGTPPNVVNYTAW 149
Query: 111 VVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLI-ALARLFGSKGLATKGLEI-LAAM 165
+ + A H L+ + G++P H TLI L ++ G + + L +
Sbjct: 150 IDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKI----GWTERAFRLFLKLI 205
Query: 166 EKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
+ +Y + +++ R L A + +R + GL+ Y +I CK G
Sbjct: 206 KSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSF 265
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT----------FENMEYG-- 272
A E+ +M+ G + + +N ++ G + A+ F+ + Y
Sbjct: 266 DRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTIL 325
Query: 273 ---------------------EDYMKPDTETYNCVIQAYTRAESYDRVQ---DVAELLGM 308
E+ PD E Y +I Y + + Q D ++G+
Sbjct: 326 ITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGL 385
Query: 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF-RALQNYEGGTKVLHNEGNFGDPLS 367
+ P +TY ++ + K T A+R F R +QN G F D ++
Sbjct: 386 L--------PTKQTYTSMIAGYCKVGRSTLALRVFERMVQN-----------GCFADSIT 426
Query: 368 L--YLRALCREGRIIELLEALEAMAKDNQPVP 397
+ LC+E R+ E E M D + VP
Sbjct: 427 YGALISGLCKESRLEEAKALYEGML-DKRLVP 457
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 129/330 (39%), Gaps = 45/330 (13%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P +F L+ L+ A+ + R + G +P T + +G
Sbjct: 105 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 164
Query: 155 ATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+L ME KI D+ + +++ L + ++++DA +F G+R Y
Sbjct: 165 IDLAFNLLNKMEAAKIEADV-VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYS 223
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I+ C G S+A ++ +M FN L+ + E F E +
Sbjct: 224 SLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF----VKEGKFVEAEKLH-- 277
Query: 273 EDYMK----PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+D +K PD TYN +I + +DR+ ++ MV K P++ TY L++
Sbjct: 278 DDMIKRSIDPDIFTYNSLINGFCM---HDRLDKAKQMFEFMVS--KDCFPDLDTYNTLIK 332
Query: 329 CFTKYCAVTEAIRHFRALQN---------YEGGTKVLHNEGNF-------------GDP- 365
F K V + FR + + Y + L ++G+ G P
Sbjct: 333 GFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP 392
Query: 366 ----LSLYLRALCREGRIIELLEALEAMAK 391
S+ L LC G++ + LE + M K
Sbjct: 393 DIMTYSILLDGLCNNGKLEKALEVFDYMQK 422
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ IL++ L N LE A +VF K ++ IY MI CKAG + ++
Sbjct: 395 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 454
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+ G +N ++S + + + A+A + M+ ED PD+ TYN +I+A+ R
Sbjct: 455 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK--EDGPLPDSGTYNTLIRAHLR 511
>gi|224119538|ref|XP_002318099.1| predicted protein [Populus trichocarpa]
gi|222858772|gb|EEE96319.1| predicted protein [Populus trichocarpa]
Length = 426
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 29/251 (11%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGD-HEGAMHSLKRELSAGVRPLHETLIALA 146
+ ++ +M AGL+P +S+ L+ AY + A + R AG++P + AL
Sbjct: 135 IEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMSDMAADAFLRMKKAGIKPTSYSYTALI 194
Query: 147 RLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVR---NKYLEDANKVFLRGAK 201
+ G K M++ I I + + L++ R K L D K+ +R
Sbjct: 195 HAYSVSGWHEKAYITFENMQREGIKPSI-ETYTTLLDAFRRAGDTKTLMDIWKLMMREKV 253
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG---- 257
G R T +++++ K G + A ++ E + G T +N L++ A G
Sbjct: 254 EGTRVT---FNILLDGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNAYARGGQDSK 310
Query: 258 IPEVA--FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
+P++ AT + ++PD+ TY +I AY R + R + MMV+ K
Sbjct: 311 LPQLLKEMATLK--------LEPDSITYTTMIYAYVRVRDFRRAFFYHK---MMVKSGK- 358
Query: 316 LQPNVKTYALL 326
P+ K+Y L
Sbjct: 359 -VPDAKSYQKL 368
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 11/173 (6%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY-EMEA 236
IL++ R + K+ L GL + Y +I+ + S+ A+ M+
Sbjct: 121 ILMDAYSRRMQPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMSDMAADAFLRMKK 180
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
AG T++ + L+ + G E A+ TFENM+ + +KP ETY ++ A+ RA
Sbjct: 181 AGIKPTSYSYTALIHAYSVSGWHEKAYITFENMQ--REGIKPSIETYTTLLDAFRRAGDT 238
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK---YCAVTEAIRHFRAL 346
+ D+ +L MM E +++ T+ +L++ F K Y + I F+
Sbjct: 239 KTLMDIWKL--MMRE---KVEGTRVTFNILLDGFAKQGHYMEARDVINEFKKF 286
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
++A + F R + G++ + E+ +I C G AL I EME G + +N L
Sbjct: 28 KEAWEFFERMTRKGVKWSPEVLGALIKSFCDEGLKKEALIIQTEMERRGISSNAIIYNTL 87
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ-DVAELLGM 308
+ + E A + M+ +KP + T+N ++ AY+R R+Q D+ E L +
Sbjct: 88 MDSYSKSNQIEEAEGLYSEMQ--AKGLKPTSATFNILMDAYSR-----RMQPDIIEKLLL 140
Query: 309 MVEDHKRLQPNVKTYALLVECF 330
++D L PN K+Y L+ +
Sbjct: 141 EMQDAG-LAPNAKSYTCLISAY 161
>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial [Vitis vinifera]
Length = 817
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 95/237 (40%), Gaps = 11/237 (4%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL+P ++ + A G+ E A+ + AGV P T S + G
Sbjct: 222 GLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLG 281
Query: 159 LEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E L A+ N+ I A+ ++ L++A VF+ G+ IY +I
Sbjct: 282 YEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHA 341
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
CKAG+ A+ + +M + G + +L C G+ F+ E+ + +
Sbjct: 342 YCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFK--EFRDSGIF 399
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
D YN V+ A + +V++ ELL M +R+ +V Y L+ YC
Sbjct: 400 LDEVLYNIVVDALCK---LGKVEEAVELLNEM--KGRRMSLDVVHYTTLI---AGYC 448
Score = 40.4 bits (93), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 126/330 (38%), Gaps = 65/330 (19%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV DM+ G++P + L+ AY G+ A+ LH ++
Sbjct: 318 DVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAV------------ALHNDMV------ 359
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
S G+ T N I + L + E+ + D K F G+ +
Sbjct: 360 -SNGIKT------------NCVIVSSILQCLCEMGMASEVVDQFKEF---RDSGIFLDEV 403
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+Y++++ CK G A+E+ EM+ H+ L++ G A FE M
Sbjct: 404 LYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEM 463
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ E ++PD TYN ++ ++R ++ + +G + L+PN T+ ++E
Sbjct: 464 K--ERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGT-----QGLKPNSATHNRIIEG 516
Query: 330 FTKYCAVTEAIRHF-----RALQNY----EGGTKV------------LHNEGNFGDPLSL 368
V EA + L+NY +G K L +G S
Sbjct: 517 LCMAGKVKEAEAFLNTLEDKCLENYSAMVDGYCKANFTRKAYELFSRLSKQGILVKKKSC 576
Query: 369 Y--LRALCREGRIIELLEALEAM-AKDNQP 395
+ L +LC EG + L LE M A D +P
Sbjct: 577 FKLLSSLCMEGEYDKALILLERMLALDVEP 606
>gi|115450361|ref|NP_001048781.1| Os03g0119700 [Oryza sativa Japonica Group]
gi|113547252|dbj|BAF10695.1| Os03g0119700, partial [Oryza sativa Japonica Group]
Length = 436
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 116/285 (40%), Gaps = 23/285 (8%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT-K 157
G SP + H L+V + AM +S PL E A A L S+G A
Sbjct: 118 GFSPSAHA-HNLLVENAGSLADYRAMSRAMESMSTRRVPLTER--AFAFLNTSQGSARDT 174
Query: 158 GLEILAAMEKINYDIRQAWLI-LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+ ILA ++++ R + + LV+ L + A V A+G Y+ +IA
Sbjct: 175 AIAILATLDEVGGPCRASGVFSLVKALASIGEFDAAMSVIQETARGA-----RYYNALIA 229
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
CK GD A E+ EM +G + +N+LL C G A E ME E
Sbjct: 230 VKCKTGDFHGAREVFDEMRRSGFGPNSNSWNYLLGCLLKNGRVAEACELVEAMERSEHND 289
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
P++ TY I AY ++ R+ +L M + +L P + + ++ + +
Sbjct: 290 IPNSLTYE--ILAYHACKA-GRMDSAMRILDQMFLE--KLTPRITIHTAFIKGYLYAGRI 344
Query: 337 TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381
+A R+ A+ + + SL + LC+ G I++
Sbjct: 345 DDACRYVSAMST--------RDRRSVNRNYSLLAKLLCKAGMIVD 381
>gi|326507498|dbj|BAK03142.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1043
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 22/246 (8%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
Q + I++ LE A ++F + GL +++Y M+ KAG H +A +
Sbjct: 787 QTFNIMISVYGLGGKLEKATEMFTAAQELGLPIDEKLYTNMLNFYGKAGRHQDASLLFNR 846
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME-YGEDYMKPDTETYNCVIQAYTR 292
M+ G M FN +++ AT G+ + A F+ M +G+ PD+ TY +I+AY+
Sbjct: 847 MKEQGIMPGKISFNSMINAYATSGLHDDAEIVFQEMHSHGQ---VPDSMTYLALIRAYSE 903
Query: 293 AESYDRVQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEG 351
+ Y + ++ + +LG + P+ ++ L+ F + EA R +Q E
Sbjct: 904 SRCYSKAEETIQNMLG------SGITPSCPHFSHLIFAFLTEGQIDEAQRICSQMQ--EI 955
Query: 352 GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV 411
G V + ++ +RA GR+ E + E + P + ILS +
Sbjct: 956 GVAV-----DLACCRAM-MRAYLEHGRVEEGISLFET---TRGSLKPDSFILSAAFHLYE 1006
Query: 412 SSWIEP 417
S EP
Sbjct: 1007 HSGREP 1012
Score = 40.0 bits (92), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 113/300 (37%), Gaps = 47/300 (15%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAM------------------------- 124
+ +M+ AG+ P + L+ AY G H M
Sbjct: 194 EAFLEMLEAGVEPDAVACGTLLCAYARRGRHGDMMLFYKATCRRGVVPPMSAFNFMLSSL 253
Query: 125 --------------HSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY 170
H ++ E + V P H T + F +GL + +++L M
Sbjct: 254 QKHRLHGKVIHLWKHMMEMEEANNVVPNHFTYTVVIGSFVKEGLLEESMQVLGKMRMSRL 313
Query: 171 DIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229
+A + L+ R+ E A ++ G+ ++ ++A K+ D+S AL
Sbjct: 314 VPEEATYSSLISLSARHGRGEHAVMLYEEMRAHGIVPSNYTCASLLALYDKSEDYSKALS 373
Query: 230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
+ EME + + + L+ G+ + A TFE ++ + D +TY + Q
Sbjct: 374 LFSEMERSRVVIDEVIYGILIRIYGKIGLYDDAQRTFEEIDNAG--LLSDEQTYVAMAQV 431
Query: 290 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+ A +YDR LL M + + P++ +Y+ L+ C + A FRAL Y
Sbjct: 432 HMNAGNYDRA-----LLVMGSMRSRNVTPSLFSYSSLLRCHVVMEDIAAAEEAFRALCKY 486
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 7/165 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
++ IL++ L + L +A K+F R G+ + Y+++I C A ALE+ M
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G + F FN L+ G + AF + M +D PD TY+ +I
Sbjct: 247 RSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMT--DDGHVPDVVTYSTLISGLC--- 301
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
S RV D LL MV+ ++ +P V T L+ K + EA
Sbjct: 302 SIARVDDARHLLEDMVK--RQCKPTVVTQNTLIHGLCKAGRIKEA 344
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 98/260 (37%), Gaps = 53/260 (20%)
Query: 95 MIAAGLSPGPRSF----HGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
M+ +G++P ++ HG+ +AYTL + A+ K S G RP T L
Sbjct: 211 MLDSGITPSAVTYNVVIHGMCLAYTL----DEALELFKSMRSKGCRPSRFTFNILIDAHC 266
Query: 151 SKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G + +L M + D+ + L+ L ++DA + K + T
Sbjct: 267 KRGKLDEAFRLLKRMTDDGHVPDV-VTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTV 325
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+ +I CKAG A E+ M ++G+
Sbjct: 326 VTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ----------------------------- 356
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
PD TYN ++ + RA +R + ELL MV + L PNV TY LV
Sbjct: 357 --------SPDVVTYNTLVHGHCRAGQTERAR---ELLSDMVA--RGLAPNVVTYTALVS 403
Query: 329 CFTKYCAVTEAIRHFRALQN 348
K + EA F +++
Sbjct: 404 GLCKANRLPEACGVFAQMKS 423
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 103/255 (40%), Gaps = 45/255 (17%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L +N+ + ++ DM G++P +++ L+ AY + + E A + L GV
Sbjct: 313 LNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGV 372
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDAN 193
P T L KG +++ M+ + D+ + IL++ L ++ A
Sbjct: 373 CPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADL-ITYNILIDSLCNKGEMKKAL 431
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
++ + GL+ + Y+ MI CK G+ AL + +ME GR+A
Sbjct: 432 RLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLA------------ 479
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
+ TYN +I+ + + D+++D LL M+E
Sbjct: 480 -------------------------NVATYNVLIKGFCKK---DKLEDANGLLNEMLE-- 509
Query: 314 KRLQPNVKTYALLVE 328
K L PN TY ++ E
Sbjct: 510 KGLIPNRMTYEIVTE 524
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ + ++++I CK + S A+++ EM G +N L++ C +V
Sbjct: 231 GICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLIN--GLCNNGKVN 288
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
AT + +KP+ T+N ++ + + + V+ EL M + + + PNV T
Sbjct: 289 EATALRDQMVNSCLKPNIITHNALLNGFCKNK---MVKQAGELFDDMPK--QGITPNVTT 343
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
Y +L++ + K + +A +R + G V + + + + LCR+G
Sbjct: 344 YNILIDAYCKDENMEDAFALYRIML----GKGVCPDVSTY----NCLIAGLCRKG 390
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 51/245 (20%), Positives = 99/245 (40%), Gaps = 12/245 (4%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ +M A G+ P +F+ L+ + + + AM GV+P T +L
Sbjct: 223 ILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLC 282
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLI---LVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+ G + + M +N ++ + L+ +NK ++ A ++F K G+
Sbjct: 283 NNGKVNEATALRDQM--VNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPN 340
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+++I CK + +A + M G +N L++ G E A
Sbjct: 341 VTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVS 400
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M+ ++K D TYN +I + ++ LL M K L+P+ TY ++
Sbjct: 401 EMD--TKHLKADLITYNILIDSLCNK---GEMKKALRLLDEMC--RKGLKPSQLTYNTMI 453
Query: 328 ECFTK 332
+ + K
Sbjct: 454 DGYCK 458
>gi|168056841|ref|XP_001780426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695174|dbj|BAD67152.1| PpPPR_38 [Physcomitrella patens]
gi|162668102|gb|EDQ54716.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 23/260 (8%)
Query: 97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156
AGL P S+ L+ + + R P + L +G+ GL
Sbjct: 173 GAGLKPDVVSYTALIQGFGKLKSYNKVTDVFSRMQRNRCPPDLKLCTVLISTYGNGGL-- 230
Query: 157 KGLEILA--AMEKINYDIRQ----AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
+LA AM+ Q A+ LV + E+A K G+ D
Sbjct: 231 ---PVLAESAMQYAQAQGLQPDAIAYTALVHAYAQEGLWEEAEKTLSDMLDVGI-VDDRP 286
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y ++A KAG N +I M+A+G A+T +N L++ + PE A A + M+
Sbjct: 287 YAALVAAYGKAGLTDNVNKILETMKASGVEASTTLYNTLINIHSKAEAPEKARAVLQLMQ 346
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVE 328
D + D TY V++AY+R ++ +AE M+ + KR +QP +Y +L+
Sbjct: 347 --ADGCQCDEITYTSVMEAYSR----NKQPLMAE---SMMGEMKRAGIQPGPVSYGVLIS 397
Query: 329 CFTKYCAVTEAIRHFRALQN 348
+ + + +A R RA+QN
Sbjct: 398 AYCRAGRLGDAERILRAMQN 417
Score = 40.8 bits (94), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 106/292 (36%), Gaps = 63/292 (21%)
Query: 60 VVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGD 119
++S G + E MQ+A+ A GL P ++ LV AY G
Sbjct: 221 LISTYGNGGLPVLAESAMQYAQ---------------AQGLQPDAIAYTALVHAYAQEGL 265
Query: 120 HEGAMHSLKRELSAGV---RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAW 176
E A +L L G+ RP AL +G GL
Sbjct: 266 WEEAEKTLSDMLDVGIVDDRPYA----ALVAAYGKAGLT--------------------- 300
Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
++ NK+ G+ A+ +Y+ +I KA A + M+A
Sbjct: 301 -------------DNVNKILETMKASGVEASTTLYNTLINIHSKAEAPEKARAVLQLMQA 347
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
G + ++ + P +A + M+ ++P +Y +I AY RA
Sbjct: 348 DGCQCDEITYTSVMEAYSRNKQPLMAESMMGEMKRAG--IQPGPVSYGVLISAYCRA--- 402
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
R+ D +L M + + +P V+ Y +++ + ++A R F+ +Q+
Sbjct: 403 GRLGDAERILRAM--QNAKCKPTVEIYNMMISGYASAKMRSQAERMFQTMQD 452
>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Vitis vinifera]
Length = 635
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 117/298 (39%), Gaps = 29/298 (9%)
Query: 47 QKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRS 106
QKH DS+ S V + + F + + + + + M +G P +
Sbjct: 120 QKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTST 179
Query: 107 FHGLVVAYTLNGDHEGAMHSLK-RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
F+ L+ Y + G+ E + L+ VRP T L R + +K K ++ M
Sbjct: 180 FNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKM 239
Query: 166 -------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+ + Y+ + +N A + L ++ + ++I
Sbjct: 240 VASGLQPDAVTYN------TIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGY 293
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC----GIPEVAFATFENMEYGED 274
CK G AL+ Y M+ G FN L+ G+ EV E E+G
Sbjct: 294 CKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEV-LTLME--EFG-- 348
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+KPD T++ ++ A++ A D+ + E+ MV+ R+QP+ Y++L + + +
Sbjct: 349 -VKPDVITFSTIMNAWSAAGFMDKCR---EIFDDMVK--ARIQPDAHVYSILAKGYVR 400
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/297 (19%), Positives = 117/297 (39%), Gaps = 43/297 (14%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V+Y M+A+GL P +++ + AY NG+ A + ++ V+P T + +
Sbjct: 234 NVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGY 293
Query: 150 GSKGLATKGLEILAAM--------------------EKINYDIRQAWLILVEEL------ 183
+G + L+ + M + ++ D L L+EE
Sbjct: 294 CKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDV 353
Query: 184 -----VRNK-----YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ N +++ ++F K ++ +Y ++ +AG+ A EI
Sbjct: 354 ITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNA 413
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M +G F +++ + G E A FE M E + P+ +T+ +I Y A
Sbjct: 414 MIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKM--CECGIAPNLKTFETLIWGYGEA 471
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
+ ++V +++ + +QP T L+ E + EA R A++N E
Sbjct: 472 RQPWKSEEVLQIM-----EEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEE 523
>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 743
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 153/357 (42%), Gaps = 28/357 (7%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA-G 134
L+++ + +V DM+ G+S ++F+ LV Y L G E A+ L+R +S
Sbjct: 176 LVRYPSSFSIASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFN 235
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDAN 193
V P + T + + KG + ++L M++ R + LV + L++A
Sbjct: 236 VNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAF 295
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
++ + + Y+++I C AG LE+ M++ +N L+
Sbjct: 296 QIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGC 355
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV-QDVAELLGMMVED 312
G+ A E ME D +KP+ T+N ++ + E + V + V EL VE
Sbjct: 356 FELGLSLEAKKLMEQME--NDGVKPNQVTHNISLKWLCKEEKREEVTRKVKEL----VEM 409
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 372
H P++ TY L++ + K ++ A+ R + + G K+ L+ L A
Sbjct: 410 HG-FSPDIVTYHTLIKAYLKVGDLSGALEMMREMG--QKGIKM------NTITLNTILDA 460
Query: 373 LCREGRIIELLEALEAMAKDNQPVPPRAMILSR-KYRTLVSSWIEPLQEEAELGYEI 428
LC+E ++ E L++ K R I+ Y TL+ + +E+ E +E+
Sbjct: 461 LCKERKVDEAHNLLDSAHK-------RGYIVDEVTYGTLIMGYFR--EEKVEKAFEM 508
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 65/318 (20%), Positives = 118/318 (37%), Gaps = 56/318 (17%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G SP ++H L+ AY GD GA+ + R G KG+
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALE-------------------MMREMGQKGIK--- 448
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
M I + +++ L + + +++A+ + K G + Y +I
Sbjct: 449 ------MNTITLNT------ILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGY 496
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
+ A E+ EM+ T FN L+ G E+A F+ E E + P
Sbjct: 497 FREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFD--ELAESGLLP 554
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
D T+N +I Y + RV+ E ++ +P+ T +L+ K +
Sbjct: 555 DDCTFNSIILGYCKE---GRVEKAFEFYNESIK--HSFKPDNYTCNILLNGLCKEGMTEK 609
Query: 339 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPP 398
A+ F L V +N + A C++ ++ E + L M ++ + P
Sbjct: 610 ALNFFNTLITEREVDTVTYNT---------MISAFCKDKKLKEAYDLLSEM-EEKRLEPD 659
Query: 399 RAMILSRKYRTLVSSWIE 416
R Y ++++S +E
Sbjct: 660 RF-----TYNSIITSLME 672
>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 117/298 (39%), Gaps = 29/298 (9%)
Query: 47 QKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRS 106
QKH DS+ S V + + F + + + + + M +G P +
Sbjct: 120 QKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTST 179
Query: 107 FHGLVVAYTLNGDHEGAMHSLK-RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
F+ L+ Y + G+ E + L+ VRP T L R + +K K ++ M
Sbjct: 180 FNTLIKGYGIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKM 239
Query: 166 -------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+ + Y+ + +N A + L ++ + ++I
Sbjct: 240 VASGLQPDAVTYN------TIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGY 293
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC----GIPEVAFATFENMEYGED 274
CK G AL+ Y M+ G FN L+ G+ EV E E+G
Sbjct: 294 CKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEV-LTLME--EFG-- 348
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+KPD T++ ++ A++ A D+ + E+ MV+ R+QP+ Y++L + + +
Sbjct: 349 -VKPDVITFSTIMNAWSAAGFMDKCR---EIFDDMVK--ARIQPDAHVYSILAKGYVR 400
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/297 (19%), Positives = 117/297 (39%), Gaps = 43/297 (14%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V+Y M+A+GL P +++ + AY NG+ A + ++ V+P T + +
Sbjct: 234 NVVYKMVASGLQPDAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGY 293
Query: 150 GSKGLATKGLEILAAM--------------------EKINYDIRQAWLILVEEL------ 183
+G + L+ + M + ++ D L L+EE
Sbjct: 294 CKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDV 353
Query: 184 -----VRNK-----YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ N +++ ++F K ++ +Y ++ +AG+ A EI
Sbjct: 354 ITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNA 413
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M +G F +++ + G E A FE M E + P+ +T+ +I Y A
Sbjct: 414 MIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKM--CECGIAPNLKTFETLIWGYGEA 471
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
+ ++V +++ + +QP T L+ E + EA R A++N E
Sbjct: 472 RQPWKSEEVLQIM-----EEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEE 523
>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
Length = 637
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 113/256 (44%), Gaps = 13/256 (5%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M++ G +F+ ++ A N + + L + + +P T + ++G
Sbjct: 281 EMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEG 340
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ E+L + + R + LV+ L ++ + +A+ VF R + + +
Sbjct: 341 QLHRLNEVLDICSR--FMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVS 398
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT--FENMEY 271
M+ C A A+++ + M G + +N + S A + +V+F + F+ M+
Sbjct: 399 MLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFS--ALGKLKQVSFISNLFDKMK- 455
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ + PD TYN +I +Y R D+ ++ E++ + +P+V TY L+ C
Sbjct: 456 -TNGIIPDVFTYNIMISSYGRVGLVDKASELFEVM-----EASSCKPDVVTYNSLINCLG 509
Query: 332 KYCAVTEAIRHFRALQ 347
K+ + EA F+ +Q
Sbjct: 510 KHGDLDEAHMLFKEMQ 525
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM- 269
Y++MI+ + G A E+ MEA+ +N L++C G + A F+ M
Sbjct: 466 YNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ 525
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
E G D PD TY+ +I+ + ++ ++V+ L M+ + PN+ TY +L++C
Sbjct: 526 EKGYD---PDVFTYSILIECFGKS---NKVEMACSLFDEMISEG--CTPNIVTYNILLDC 577
Query: 330 FTKYCAVTEAIRHFRALQ 347
+ EA + + ++
Sbjct: 578 LERRGKTEEAHKLYETMK 595
>gi|356546852|ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15200-like [Glycine max]
Length = 481
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 92/211 (43%), Gaps = 9/211 (4%)
Query: 124 MHSLKRELSAGVRPLHETLIA-LARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVE 181
+H + E+S L E + A L R F + +++ ++ ++ +A+ L+
Sbjct: 121 LHQVLDEMSKREELLDEAVFATLVRRFVGAHKVDEAIQLFYRRKEFGLELNSEAFRTLLM 180
Query: 182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA 241
L R K++EDA +F K GLRA +++++++ C G+ A + ++ A+
Sbjct: 181 WLCRYKHVEDAEALFHNSVKKGLRADIKMWNVILNGWCVLGNSHEAKRVWRDIVASPCKP 240
Query: 242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
F + + G A F M + KPD NC+I A + R+ +
Sbjct: 241 DIFTYATFIKALTKKGKLGTALKLFRGM--WDKGGKPDVVICNCIIDALCFKK---RIPE 295
Query: 302 VAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
E+ M E + +PNV TY L++ K
Sbjct: 296 ALEIFCDMSE--RGCEPNVATYNSLIKYMCK 324
>gi|422294671|gb|EKU21971.1| hypothetical protein NGA_2006000, partial [Nannochloropsis gaditana
CCMP526]
Length = 472
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 105/239 (43%), Gaps = 8/239 (3%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
L P +++ L+ AYT GD GA LKR + AG+ P T L F ++
Sbjct: 19 LKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAAE 78
Query: 160 EILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+++A M++ + D+ +L + + A +V R A+ G+ Y+ +I
Sbjct: 79 KMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEG 138
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
KAG+ A ++ M G T+ ++ L+ A + M+ ++ ++
Sbjct: 139 YVKAGEMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMK--KEGVQ 196
Query: 278 PDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVED---HKRLQPNVKTYALLVECFTK 332
+ + + ++ AY + + + V A +L + E+ K +PNV TY+ L+ + +
Sbjct: 197 ANVQVFTTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVYAR 255
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 93/258 (36%), Gaps = 44/258 (17%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV+ M GL+P ++ L+ AYT D GA L R GV+ + L +
Sbjct: 150 DVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQANVQVFTTLMNAY 209
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD- 208
+G +LA M L + EE GG + +
Sbjct: 210 AKRGDVEGAEGVLARM-----------LAVAEE-----------------EGGGSKDCEP 241
Query: 209 --EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y ++ +AG + A + M AAG F L++ + G PE A
Sbjct: 242 NVHTYSTLMNVYARAGLAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVL 301
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRA---------ESYDRVQDVAELLGMMVEDHKRLQ 317
+ ME + P+ TYN ++ A +R RV V + + L+
Sbjct: 302 KRMEAAG--VSPNVLTYNTLLSATSRMGLREGEVEERRAKRVLQVYDTMRRSAGKGGGLE 359
Query: 318 --PNVKTYALLVECFTKY 333
P+ TY +L+ C ++
Sbjct: 360 KAPDEATYTVLLTCLLRF 377
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 9/251 (3%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+A+ N + +M++ GL P +++ L+ A+ + AM K G P
Sbjct: 53 YAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPD 112
Query: 139 HETLIALARLFGSKGLATKGLEIL--AAMEKINYDIRQAWLILVEELVRNKYLEDANKVF 196
T + G T+ LE+L +E+ A+ L+ L +++ +E A K+
Sbjct: 113 VVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLL 172
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
A G + Y+ +++ C+ G S A + M + G +N LL
Sbjct: 173 EEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKE 232
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G + A F+++ + YM PDT TYN ++ R + D + E+ MV
Sbjct: 233 GKTDEAMKLFKDV-IAKGYM-PDTVTYNSILLGLARKSNMDEAE---EMFKKMVASG--C 285
Query: 317 QPNVKTYALLV 327
PN TY++++
Sbjct: 286 APNGATYSIVL 296
>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
Length = 720
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 10/198 (5%)
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
+V Y NG E A+ +R L GV TL ++A + G+ +G ++ +EK+
Sbjct: 319 MVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLW 378
Query: 170 YDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228
Y + +V+ + LEDA +F R + ++ M+ G A+
Sbjct: 379 YKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNI----AVWTSMLCSYASHGQGRIAI 434
Query: 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNCV 286
E+ M A +LS + G+ F+ M EYG + P E YNC+
Sbjct: 435 ELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYG---IVPSIEHYNCI 491
Query: 287 IQAYTRAESYDRVQDVAE 304
+ Y R+ D+ ++ E
Sbjct: 492 VDLYGRSGLLDKAKNFIE 509
>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 125/328 (38%), Gaps = 79/328 (24%)
Query: 90 DVIYDMIAA----GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIAL 145
D IY +I+ G++P F+ ++ A++ +G+ E AM + + G++P T L
Sbjct: 65 DSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTL 124
Query: 146 ARLFGSKGL---ATKGLEILAAMEKINYDIR----------------QAWLILVEEL--- 183
+ +G G + K LE+++ + ++R +AW ++ + +
Sbjct: 125 IKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASG 184
Query: 184 ----------VRNKY-----LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228
+ Y L+ A V L G++ + ++++ CK G AL
Sbjct: 185 IQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREAL 244
Query: 229 EIAYEMEAAGRMATTFHFNHLLSCQATC----GIPEV--------------AFATFENME 270
AY M+ G FN L+ G+ EV F+T N
Sbjct: 245 RFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAW 304
Query: 271 YGEDYM---------------KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
+M +PD Y+ + + Y RA+ ++ + ELL M++
Sbjct: 305 STAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAE---ELLTTMIKSG-- 359
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHF 343
QPNV + ++ + + A+R F
Sbjct: 360 FQPNVVIFTTVISGWCSAGKMDYAVRVF 387
Score = 41.6 bits (96), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 4/169 (2%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I M + R R+A R Y M G+ P F+ L+ + D +G L
Sbjct: 229 IIMSGYCKEGRIREALRF---AYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLM 285
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYL 189
GV+P T + + + G K EI M K + A+ IL + VR +
Sbjct: 286 EEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEP 345
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
E A ++ K G + I+ +I+ C AG A+ + +M G
Sbjct: 346 EKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRG 394
>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 674
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 99/242 (40%), Gaps = 36/242 (14%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
++++++ +R K + ANK F + GL ++ E Y+++I KAG+ ALE M+
Sbjct: 393 YIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQ 452
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFEN-MEYGEDYMKPDTETYNCVIQAYTRAE 294
+G FN L++ G A A + ME+G + PD T+ +I
Sbjct: 453 ESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHG---LMPDVITFTSLIDGLCHTH 509
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR------------- 341
D D M E R PNV+TY +L+ V++AI
Sbjct: 510 QLD---DAFNCFSEMSEWGVR--PNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPD 564
Query: 342 ---------HFRALQNYEGGTKVLHNEGNFGDPLSLY-----LRALCREGRIIELLEALE 387
F ++ E K+ ++ +G Y ++ALC E R+ E E +
Sbjct: 565 AYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIIL 624
Query: 388 AM 389
AM
Sbjct: 625 AM 626
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY----EM 234
LVE R A++VF++ + GLR + IY+ +IA +AG A++ AY +M
Sbjct: 151 LVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAG----AVDAAYLRFQQM 206
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
A G F +N L+ GI + A + ME ++P+ TY ++ + A
Sbjct: 207 PADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAG--IRPNVVTYTMLVDGFCNAS 264
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
RV++ +L M E K + TY LV
Sbjct: 265 ---RVEEAVCVLERMKE--KGVSATEATYRSLVH 293
>gi|125606474|gb|EAZ45510.1| hypothetical protein OsJ_30168 [Oryza sativa Japonica Group]
Length = 651
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M AG + +N LL G+ + A F+ M ED ++PD +YN +I+ Y RA
Sbjct: 258 MRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMST-EDQVRPDVVSYNILIKGYCRA 316
Query: 294 -ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
++D + ++E+ ++ +L P+ TY L++C I F+ ++ G
Sbjct: 317 GRAHDAMARLSEM-----QEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMG 371
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391
+ + L + ALC++G+ E + E M K
Sbjct: 372 NDIPQHA------YVLVIGALCKDGKPFEGMAVFERMLK 404
>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 18/243 (7%)
Query: 98 AGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK 157
+ P F+ L+ AY ++ A + L + P +T L + + GL +
Sbjct: 149 SSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIER 208
Query: 158 GLEILAAMEK-------INYDIRQAWLILVEELVRNK-YLEDANKVFLRGAKGGLRATDE 209
+L M+ I + A+ +E L++ K E+A VF R + + T E
Sbjct: 209 AEVVLVEMQNHHVSPKTIGVTVYNAY---IEGLMKRKGNTEEAIDVFQRMKRDRCKPTTE 265
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y+LMI KA + ++ EM + + L++ A G+ E A FE +
Sbjct: 266 TYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQL 325
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ ED ++PD YN ++++Y+RA AE+ +M H +P+ +Y ++V+
Sbjct: 326 Q--EDGLEPDVYVYNALMESYSRA---GYPYGAAEIFSLM--QHMGCEPDRASYNIMVDA 378
Query: 330 FTK 332
+ +
Sbjct: 379 YGR 381
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEME----AAGRMATTFHFNHLLSCQATCGIPEVA 262
T++ Y L+I C AG A + EM+ + + T + ++ G E A
Sbjct: 189 TEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEA 248
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRA-ESYDRVQDVAELLGMMVEDHKRLQPNVK 321
F+ M+ D KP TETYN +I Y +A +SY + E+ H+ +PN+
Sbjct: 249 IDVFQRMK--RDRCKPTTETYNLMINLYGKASKSYMSWKLYCEM-----RSHQ-CKPNIC 300
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQ 347
TY LV F + +A F LQ
Sbjct: 301 TYTALVNAFAREGLCEKAEEIFEQLQ 326
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 12/204 (5%)
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYL 189
S +P T AL F +GL K EI +++ + D+ + L+E R Y
Sbjct: 292 SHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDV-YVYNALMESYSRAGYP 350
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
A ++F G Y++M+ +AG HS+A + EM+ G +A T +H+
Sbjct: 351 YGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLG-IAPTMK-SHM 408
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGM 308
L A +V E E+ ++PDT N ++ Y R + +++ + AE+
Sbjct: 409 LLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEM--- 465
Query: 309 MVEDHKRLQPNVKTYALLVECFTK 332
++ ++ TY +L+ + K
Sbjct: 466 ---ENGPCTADISTYNILINIYGK 486
>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 124/323 (38%), Gaps = 65/323 (20%)
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYL 189
++GV+P T + + S G IL M +KI D + L+ + + L
Sbjct: 249 TSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPD-SFTYGSLISGMCKQGRL 307
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
E+A+K+F + GLR + IY+ +I C G+ A EM G T +N L
Sbjct: 308 EEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSL 367
Query: 250 LSC--------QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
+ +A C I E+ E + PD TYN +I Y R + +
Sbjct: 368 IHALFMEQRTDEAECMIKEIQ----------EKGISPDAITYNILINGYCRCANAKK--- 414
Query: 302 VAELLGMMVEDH---KRLQPNVKTYALLVECFTKYCAVTEA---------------IRHF 343
++ D ++P KTY L+ +K + EA + F
Sbjct: 415 -----AFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMF 469
Query: 344 RAL-------QNYEGGTKVLHNEGNFGDP-----LSLYLRALCREGRIIELLEALEAMAK 391
AL N +G ++L + P + ++ CREG++ E E + M +
Sbjct: 470 NALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKR 529
Query: 392 DNQPVPPRAMILSRKYRTLVSSW 414
+ + P + + TL+S +
Sbjct: 530 --RGIKPDHI----SFNTLISGY 546
Score = 40.8 bits (94), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 22/242 (9%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+SP +++ L+ Y + + A L++G++P +T +L + K +
Sbjct: 391 GISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEA 450
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI-------- 210
++ +KI + +I+ L+ + + ++N ++GA L+ D +
Sbjct: 451 DDLF---KKITSEGVLPDVIMFNALI-DGHCSNSN---VKGAFELLKDMDRMKVPPDEVT 503
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
++ ++ C+ G A E+ EM+ G FN L+S + G + AF M
Sbjct: 504 FNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEML 563
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+ P TYN ++Q + + D + ELL MV K + P+ TY L+E
Sbjct: 564 --DTGFNPTVLTYNALVQGLCKNQEGDLAE---ELLKEMVS--KGMTPDDTTYFTLIEGI 616
Query: 331 TK 332
K
Sbjct: 617 AK 618
Score = 40.4 bits (93), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 21/227 (9%)
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++D +I C A E Y M+ G + T N LLS E A+ + M
Sbjct: 153 VFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEM 212
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+K T+N +I + + +D +G M + ++PN+ TY +V
Sbjct: 213 --FRLRIKSSVYTFNIMINVLCKEGKLKKAKD---FVGHM--ETSGVKPNIVTYNTIVH- 264
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
YC+ + + A+ K+ + +G +S +C++GR+ E + E M
Sbjct: 265 --GYCS-SGRVEAADAILTTMKRQKIEPDSFTYGSLIS----GMCKQGRLEEASKIFEEM 317
Query: 390 AKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYIS 436
+ + + P A+I Y TL+ + + Y+ + + + IS
Sbjct: 318 VQ--KGLRPSAVI----YNTLIDGFCNKGNLDMASAYKDEMLKKGIS 358
>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 6/227 (2%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I + L + R RD V ++ +M AG P + L++ YT G+ + +
Sbjct: 732 IMISLLCHNKRFRD---VELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSI 788
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYL 189
L AG+ P +T L ++ +G +L M K + +++ IL+ + K
Sbjct: 789 LEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLW 848
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
E A+ +F G R IY +M+ A +HS A + M+ G T + L
Sbjct: 849 EQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHIL 908
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
++ T G P+ A +++ ++ T Y+ V+ AY R Y
Sbjct: 909 MTSYGTSGHPDEAEKVLNSLKSSN--LEISTLPYSTVLDAYLRNRDY 953
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 64/331 (19%), Positives = 123/331 (37%), Gaps = 33/331 (9%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H R A + +++ G P +++ L+ A+ GD E + + AG R
Sbjct: 178 HGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKD 237
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFL 197
T + ++G G L + M I + +LV+ L + + +A KV
Sbjct: 238 GITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLE 297
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
A GL+ T + +I K+G +A M +G + +L A
Sbjct: 298 EMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSD 357
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+ M +D KPD Y ++ A + +D ++ V + + + E +
Sbjct: 358 ETRKLMVLYRAMI--KDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFE----MN 411
Query: 318 PNVKTYALL-VECFT-------KYC---------AVTEAIRHFRALQNYEGGTKVLH--- 357
P V + L+ EC + + C ++ + + + +E G +L
Sbjct: 412 PLVISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIR 471
Query: 358 ----NEGNFGDPLSLYLRALCREGRIIELLE 384
N N S+ L LC+ G+I++ ++
Sbjct: 472 QHVPNSHNLISECSIML--LCKNGKIVDAIQ 500
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286
ALE+ +E+ AG +N L+S + + A A FE M E +PD TYN +
Sbjct: 117 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASE--CRPDLWTYNAM 174
Query: 287 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ + R + Q+ + +VE K QP+ TY L+ F K
Sbjct: 175 VSVHGRC---GKAQEAELMFKELVE--KGFQPDAVTYNSLLYAFAK 215
>gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Glycine max]
Length = 466
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 23/219 (10%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A+ +L++ L + +EDA ++ + + ++ E Y++ + C+ + + +++ E
Sbjct: 133 NAFNLLLDALCKCCLVEDAETLY-KKMRKTVKPNAETYNIFVFGWCRVRNPTRGMKLLEE 191
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY-GEDYMKPDTETYNCVIQAYTR 292
M G F +N + G+ A FE M G P +TY +I A +
Sbjct: 192 MVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAKTYAIIIVALAQ 251
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN---- 348
+DR+++ +L+G M+ P+V TY ++E + EA + + N
Sbjct: 252 ---HDRMEECFKLIGHMISSG--CLPDVTTYKEIIEGMCVCGKIDEAYKFLEEMGNKSYR 306
Query: 349 -----YEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL 382
Y KVL + D L LY GR+IEL
Sbjct: 307 PDIVTYNCFLKVLCDNKKSEDALKLY-------GRMIEL 338
>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
Length = 871
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 107/248 (43%), Gaps = 10/248 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET--LIALARLFGSK 152
M+ G +P + + L++ G + A L R L G P+++ + L F
Sbjct: 483 MVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGF-PINKVAYTVLLDGYFKMN 541
Query: 153 GLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
L E+ Y A+ L++ L + +E+A +VFL + G + Y+
Sbjct: 542 NLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYN 601
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I C G + AL++ EM G ++ TF FN ++ G + A TF +M+
Sbjct: 602 SLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQ-- 659
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ PD T+N +I Y +A +D V E++ M L P++ TY + + +
Sbjct: 660 RIGLLPDIFTFNILIGGYCKA--FDMV-GAGEIVNKMYS--CGLDPDITTYNTYMHGYCR 714
Query: 333 YCAVTEAI 340
+ +A+
Sbjct: 715 MRKMNQAV 722
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 7/205 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++Y M+ G ++ L+ Y + EGA K G+ P AL
Sbjct: 514 LLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLS 573
Query: 151 SKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G + E+ M I + A+ L+ L + +A K+ + GL +
Sbjct: 574 KAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTF 633
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS--CQATCGIPEVAFATFE 267
++++I C+ G A+E +M+ G + F FN L+ C+A V
Sbjct: 634 TFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKA---FDMVGAGEIV 690
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTR 292
N Y + PD TYN + Y R
Sbjct: 691 NKMYSCG-LDPDITTYNTYMHGYCR 714
Score = 39.3 bits (90), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
ILV + +ED++++ GL +YD+M++ C AG A+++ E+
Sbjct: 392 ILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEK 451
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G + FN L+ + G+ + AF + M P + T N ++ R
Sbjct: 452 GLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMV--RCGFTPSSSTCNSLLMGLCRK---G 506
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+Q+ LL M+E K N Y +L++ + K
Sbjct: 507 WLQEARILLYRMLE--KGFPINKVAYTVLLDGYFK 539
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 111/273 (40%), Gaps = 54/273 (19%)
Query: 46 QQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPR 105
QQK S + + GSVV A +N P ++ DMI ++P +
Sbjct: 466 QQKGIKSDVISFGSVVKA---------------FCKNGKIPEAVAILDDMIYKDVAPNAQ 510
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
++ ++ AY +GD E A +++ ++GV S + T L
Sbjct: 511 VYNSIIDAYIESGDTEQAFLLVEKMKNSGV---------------SASIVTYNL------ 549
Query: 166 EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
L++ L R+ +++A ++ GLR Y+ +I+ C GD
Sbjct: 550 -------------LLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTD 596
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
ALE+ EM G T ++ L+S A+ G ++ M + ++P + Y
Sbjct: 597 KALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKN--VEPSSSIYGI 654
Query: 286 VIQAYTRAESYDRVQDVAELL---GMMVEDHKR 315
++ AY R E+ +V + + + G+ +D KR
Sbjct: 655 MVDAYVRCENDSKVASLKKEMSEKGIAFDDTKR 687
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 123/324 (37%), Gaps = 65/324 (20%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
++ GL P ++ L+ Y D GA ++ S +RP H T AL +
Sbjct: 360 LVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 419
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
TK +++ ME K G+ + E ++ +
Sbjct: 420 VTKAEDLVMEME----------------------------------KSGVDPSVETFNTL 445
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFENMEYGE 273
I AG + +M+ G + F ++ G IPE A A ++M Y +
Sbjct: 446 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPE-AVAILDDMIYKD 504
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFT 331
+ P+ + YN +I AY ES D Q ++VE K + ++ TY LL++
Sbjct: 505 --VAPNAQVYNSIIDAYI--ESGDTEQAF-----LLVEKMKNSGVSASIVTYNLLLKGLC 555
Query: 332 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAM 389
+ + EA E L N+G D +S + A C +G + LE L+ M
Sbjct: 556 RSSQIDEA----------EELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEM 605
Query: 390 AKDNQPVPPRAMILSRKYRTLVSS 413
K + P R Y TLVS+
Sbjct: 606 NK--YGIRPTL----RTYHTLVSA 623
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 21/206 (10%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++IA ++G S+AL++ EM G + +N ++ G E F + M
Sbjct: 197 YNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQML 256
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+ D KP+ TYN ++ RA D + + + + + P+ TY++L +
Sbjct: 257 H--DGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMA-----SHSMFPDGFTYSILFDGL 309
Query: 331 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
T+ + F ++ + G + G + S+ L LC++G++ + + LE +
Sbjct: 310 TRTGESRTMLSLFA--ESLKKGVML----GAY--TCSILLNGLCKDGKVAKAEQVLEMLV 361
Query: 391 KDNQPVPPRAMILSRKYRTLVSSWIE 416
+ + P +I Y TL++ + +
Sbjct: 362 --HTGLVPTTVI----YNTLINGYCQ 381
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 123/305 (40%), Gaps = 24/305 (7%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
++ D R D++ M G+ P +++ ++ + A+ L+ S GV+P
Sbjct: 386 CKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTA 445
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK--INYDIR--QAWLILVEELVRNKYLEDANKV 195
+ + +G G K ++ M+K I I A L + E R + +A +
Sbjct: 446 FSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGR---ISEAEDI 502
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F K GL Y++++ KAG A ++ EM + G N L++
Sbjct: 503 FNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYK 562
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G + A+ F ++ + + P TYN ++ + ++ EL G M E
Sbjct: 563 AGRVDAAWKMFGRLKNLK--LAPTVVTYNILLTGLGKE---GKILKALELFGSMTESG-- 615
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL-HNEGNFGDPLSLYLRALC 374
PN T+ L++C +K AV A++ F + VL +N +G L
Sbjct: 616 CPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYG---------LI 666
Query: 375 REGRI 379
REGRI
Sbjct: 667 REGRI 671
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 10/249 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
++ + + D+ Y++++ SP P ++ L+ G E AM + L G P
Sbjct: 877 VKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNS 936
Query: 140 ETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFL 197
L FG G E+ M E I D++ ++ ILVE L +++A + F
Sbjct: 937 VIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLK-SYTILVECLCITGRIDEAVQYFE 995
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
GL Y+ +I K+ AL + EM+ G + +N L+ G
Sbjct: 996 ELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAG 1055
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+VA +E ++ ++P TYN +I+ ++ + + D+ V + MMV
Sbjct: 1056 KVDVAVKMYEELQLVG--LEPSVFTYNALIRGHSLSGNKDQAFSVFK--KMMVVG---CS 1108
Query: 318 PNVKTYALL 326
PN +T+A L
Sbjct: 1109 PNTETFAQL 1117
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM- 269
++++I+ K+ + + AL++ YE+ + T + L+ G E A FE M
Sbjct: 869 HNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEML 928
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+YG P++ YN +I + ++ D EL MV++ R P++K+Y +LVEC
Sbjct: 929 DYG---CGPNSVIYNILINGFGKSGEIDFA---CELFKKMVKEGIR--PDLKSYTILVEC 980
Query: 330 FTKYCAVTEAIRHFRALQ 347
+ EA+++F L+
Sbjct: 981 LCITGRIDEAVQYFEELK 998
Score = 46.2 bits (108), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 121/592 (20%), Positives = 203/592 (34%), Gaps = 156/592 (26%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
MI+ G+ P +++ L+VA GD M+ L+ S G+RP T R G
Sbjct: 226 MISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARR 285
Query: 155 ATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLR-------------- 198
I M E D+ + +L++ L L+ A +++++
Sbjct: 286 IDDAWGIFKEMDDEGCGPDV-ITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYI 344
Query: 199 ------GAKGGLRATDEI---------------YDLMIAEDCKAGD-------------- 223
G G L Y ++I CK+GD
Sbjct: 345 TLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTK 404
Query: 224 ------HS---------------NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
H+ ALE+ ME+ G T F + + G P A
Sbjct: 405 GIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKA 464
Query: 263 FATFENMEY-------------------------GEDY--------MKPDTETYNCVIQA 289
TFE M+ ED + PD+ TYN +++
Sbjct: 465 IDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKC 524
Query: 290 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
Y++A D+ +LL M+ K +P+V L+ K V A + F L+N
Sbjct: 525 YSKAGQIDK---ATQLLSEMIS--KGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNL 579
Query: 350 E-GGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYR 408
+ T V +N + L L +EG+I++ LE +M + PP + +
Sbjct: 580 KLAPTVVTYN---------ILLTGLGKEGKILKALELFGSMTESG--CPPNTITFNSLLD 628
Query: 409 TL-----VSSWIEPLQEEAELGYEIDYIARYISEGGLTGERK----RWVPRRGKTPLDPD 459
L V ++ + D + GL E + W + K L PD
Sbjct: 629 CLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKFLSPD 688
Query: 460 AV-------GFIYSNPMETSFK-------QRCLEDGKKYHRKLLRTLQNEGPAVLGDVSE 505
V G + +E + K Q CL+ ++ +L+ + E ++ E
Sbjct: 689 YVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTE-----AEIEE 743
Query: 506 SDYVRVEERLKKLIKGPEQHVLKPKAASKMVVSELKEELDAQGLPTDGTRNV 557
+ + E L + HV+ P V+ + K+ LDAQ + T+N+
Sbjct: 744 A--ISFAEILVCNSVCQDDHVMLPLIK---VLCKRKKALDAQNVFDKFTKNL 790
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 91/252 (36%), Gaps = 42/252 (16%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ D+ GLSP +++ L+ Y+ G + A L +S G P + +I
Sbjct: 501 DIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEP--DVMI------ 552
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
IN L+ L + ++ A K+F R L T
Sbjct: 553 ------------------INS--------LINTLYKAGRVDAAWKMFGRLKNLKLAPTVV 586
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y++++ K G ALE+ M +G T FN LL C + ++A F M
Sbjct: 587 TYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRM 646
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
PD TYN +I R D + K L P+ T L+
Sbjct: 647 TMMN--CNPDVLTYNTIIYGLIREGRIDYA------FWFFHQMKKFLSPDYVTLCTLIPG 698
Query: 330 FTKYCAVTEAIR 341
++ V +AI+
Sbjct: 699 VVRHGRVEDAIK 710
>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
Length = 489
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 98/243 (40%), Gaps = 42/243 (17%)
Query: 86 PRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIAL 145
P++ +V DM+AAG P ++ +V A G E A+ ++ S G +P L
Sbjct: 226 PKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSIL 285
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
+G D+R +EDA FL K G+
Sbjct: 286 VHTYG-------------------VDMR---------------IEDAVAAFLDMEKDGIM 311
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+Y+ +I CK NA + +M+ G + +N +L+ + G + A+
Sbjct: 312 PDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISLGKDDEAYRV 371
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
F +M KPD++TY +I+ + + + V + + + K+ P++ T+++
Sbjct: 372 FRSM---IKRCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRL-----KQFLPSMHTFSV 423
Query: 326 LVE 328
L+
Sbjct: 424 LIN 426
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 13/176 (7%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + IL+E R L +V+ G + Y +M+ CK G A+ + +
Sbjct: 210 KTYSILLEGWGRAPSLPKMREVYSDMLAAGCQPDIVTYGIMVDALCKTGRVEEAVCVVQD 269
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M + G TTF ++ L+ E A A F +ME +D + PD YN +I A+ +
Sbjct: 270 MSSRGCQPTTFIYSILVHTYGVDMRIEDAVAAFLDME--KDGIMPDVVVYNALITAFCKV 327
Query: 294 ESYD---RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ ++ RV D + G + PN +T+ +++ EA R FR++
Sbjct: 328 KKFENAFRVMDDMQGHG--------ISPNSRTWNIILNTLISLGKDDEAYRVFRSM 375
>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 485
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 13/176 (7%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + IL+E R L KV+ G + Y +M+ CK G A+ + +
Sbjct: 206 KTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVFVVQD 265
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M + G TTF ++ L+ E A ATF +M+ +D + PD YN ++ A+ +
Sbjct: 266 MTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQ--KDGIVPDVVVYNALVTAFCKV 323
Query: 294 ESYD---RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ +D RV D E G + PN +T+ +++ EA R FR +
Sbjct: 324 KKFDNAFRVMDDMEGHG--------ITPNSRTWNIILNKLISLGKDDEAYRVFRRM 371
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 127/323 (39%), Gaps = 60/323 (18%)
Query: 22 GVVPIRSAMSS-----PEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEEL 76
GVVP +A +S + K RK Q+ +Q +G S + S +G
Sbjct: 166 GVVPNLAAFNSLLCALCKSKNVRKAQEIFEQMNGR--FSPDAKTYSILLEG--------- 214
Query: 77 MQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVR 136
R + P++ V DM+ AG P ++ +V + G E A+ ++ S G +
Sbjct: 215 --WGRAPNLPKMRKVYSDMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQ 272
Query: 137 PLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF 196
P T I S + T G+E+ +EDA F
Sbjct: 273 P--TTFIY------SVLVHTYGVEM--------------------------RIEDAVATF 298
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
L K G+ +Y+ ++ CK NA + +ME G + +N +L+ +
Sbjct: 299 LDMQKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISL 358
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G + A+ F M +PD++TY +I+ + + + V + + + K+
Sbjct: 359 GKDDEAYRVFRRM---IKRCQPDSDTYTMMIKMFCENDRLEMALKVWKYMRL-----KQF 410
Query: 317 QPNVKTYALLVECFTKYCAVTEA 339
P++ T+++L+ V++A
Sbjct: 411 LPSMHTFSVLINGLCDKGEVSQA 433
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 10/239 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ YD+++ SP P ++ L+ G E A + L G P L F
Sbjct: 879 DLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGF 938
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G +G E+ M E I D++ ++ I+V+ L ++DA F GL
Sbjct: 939 GKQGDVETACELFRRMVKEGIRPDLK-SYSIMVDCLCMVGKVDDALHYFEELKLSGLDPD 997
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+LMI ++ AL + EM G + +N L+ G+ E A +E
Sbjct: 998 LVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYE 1057
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
++ ++P+ TYN +I+ ++ + + DR V + MMV +PN T+A L
Sbjct: 1058 ELQLKG--LEPNVFTYNALIRGHSMSGNPDRAYAVYK--KMMVGG---CRPNTGTFAQL 1109
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 22/255 (8%)
Query: 162 LAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220
L M K+ + + +++ L+ L+++ + +A KV+ R G++ + + Y ++ K
Sbjct: 180 LEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGK 239
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
D + + EME+ G + F + G + A+ + M+ + PD
Sbjct: 240 RRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMD--DAGCGPDV 297
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
TY +I A A + +++ L M HK P+ TY L++ F+ + +AI
Sbjct: 298 VTYTVLIDALCNAGKLNNAKEL--FLKMKASSHK---PDRVTYITLLDKFSDH-GDLDAI 351
Query: 341 RHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 400
+ F + +G L + F ++ + ALC+ G++ E L+ M K Q V P
Sbjct: 352 KEFWSEMEADG---YLPDVVTF----TILIDALCKVGKVDEAFGTLDVMKK--QGVAPNL 402
Query: 401 MILSRKYRTLVSSWI 415
Y TL+ +
Sbjct: 403 ----HTYNTLICGLL 413
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 8/172 (4%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
LV+ L ++ DA VFL+ K + + E Y+ +I KA A + Y+M+ A
Sbjct: 758 LVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNA 817
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G F +N L G + F +E M + KP+T T+N VI ++ S D
Sbjct: 818 GCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRG--CKPNTITHNIVIFGLVKSNSLD 875
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+ D+ +M D P TY L++ K + EA + F + +Y
Sbjct: 876 KAIDL--YYDLMSGD---FSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDY 922
Score = 43.9 bits (102), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 110/289 (38%), Gaps = 43/289 (14%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG---- 150
M G S+ GL+ +G A+ +R +S G++P +T AL G
Sbjct: 183 MRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRD 242
Query: 151 ------------SKGL------ATKGLEILAAMEKIN--YDIRQ------------AWLI 178
S GL T + IL KI+ Y I + + +
Sbjct: 243 IETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTV 302
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ L L +A ++FL+ + Y ++ + GD E EMEA G
Sbjct: 303 LIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADG 362
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ F L+ G + AF T + M+ + + P+ TYN +I R +R
Sbjct: 363 YLPDVVTFTILIDALCKVGKVDEAFGTLDVMK--KQGVAPNLHTYNTLICGLLRL---NR 417
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ + EL M + L+ TY L ++ + K +AI+ F ++
Sbjct: 418 LDEALELFNSM--ESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMK 464
Score = 41.6 bits (96), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 109/276 (39%), Gaps = 15/276 (5%)
Query: 133 AGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLED 191
G+ P T L R +G G +++L+ ME+ D + L++ L + +++
Sbjct: 501 CGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDE 560
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A K+F R + L T Y+ ++A K G A + M A T FN LL
Sbjct: 561 AWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLD 620
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
C G ++A M E PD TYN VI + +RV L M
Sbjct: 621 CLCKNGEVDLALKMLFRMT--EMNCFPDVLTYNTVIYGLIKE---NRVNYAFWLFHQM-- 673
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 371
K + P+ T L+ K + +A R + ++ G H +G+F + L +
Sbjct: 674 -KKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGD----HADGSFWEDLMGGIL 728
Query: 372 ALCREGRIIELLEAL--EAMAKDNQPVPPRAMILSR 405
G+ I E+L + +D+ + P L +
Sbjct: 729 IEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCK 764
Score = 40.4 bits (93), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 10/245 (4%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G++P +++ L+ + A+ S G+ T I +G G + K
Sbjct: 397 GVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKA 456
Query: 159 LEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
++ M K N + A + L LE+A + F K GL Y++++
Sbjct: 457 IKTFEKM-KTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMR 515
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
KAG +A+++ EME G N L+ + A+ F+ M+ E +
Sbjct: 516 CYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMK--EMKL 573
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
P TYN ++ + RVQ+ L M+ D PN ++ L++C K V
Sbjct: 574 APTVVTYNTLLAGLGKE---GRVQEATALFKGMIADD--CPPNTISFNTLLDCLCKNGEV 628
Query: 337 TEAIR 341
A++
Sbjct: 629 DLALK 633
Score = 40.0 bits (92), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 9/146 (6%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G + ++++I K+ A+++ Y++ + T + + L+ G E A
Sbjct: 853 GCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEA 912
Query: 263 FATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
FE M +YG P+ YN ++ + + V+ EL MV++ R P++K
Sbjct: 913 KQFFEEMLDYG---CMPNCPLYNILMNGFGKQGD---VETACELFRRMVKEGIR--PDLK 964
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQ 347
+Y+++V+C V +A+ +F L+
Sbjct: 965 SYSIMVDCLCMVGKVDDALHYFEELK 990
>gi|15231886|ref|NP_188076.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274210|sp|Q9LUD6.1|PP230_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g14580, mitochondrial; Flags: Precursor
gi|9294380|dbj|BAB02390.1| unnamed protein product [Arabidopsis thaliana]
gi|119935972|gb|ABM06049.1| At3g14580 [Arabidopsis thaliana]
gi|332642020|gb|AEE75541.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 405
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 11/205 (5%)
Query: 121 EGAMHSLKRELSAGVRPLHETLIALARLFGS-KGLATKGLEILAAMEKIN-YDIRQAWLI 178
E M ++K L R E L R++G+ G + +EIL M + +++
Sbjct: 115 EEVMRTIK--LEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFGMPDFGCWPSSKSFNF 172
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
++ LV K ++ +K+F+ K G+ +++I C++G+ AL++ E
Sbjct: 173 ILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQK 232
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
F+ L+ G E AF E ME ++ ++PDT T+N +I + R
Sbjct: 233 SRPNVMTFSPLIRGFCNKGKFEEAFKLLERME--KERIEPDTITFNILISGLRKK---GR 287
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTY 323
V++ +LL M K +PN TY
Sbjct: 288 VEEGIDLLERM--KVKGCEPNPGTY 310
>gi|440793601|gb|ELR14780.1| PPR repeat/pentatricopeptide repeat domain containing protein,
partial [Acanthamoeba castellanii str. Neff]
Length = 610
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 18/196 (9%)
Query: 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286
AL++ M G + F L+S G EV A + E M P +YN +
Sbjct: 102 ALDLVTRMTQQGYVPDVFVLTALVSALGRAG--EVGKAQYFFNEIQRLGMTPTLHSYNSM 159
Query: 287 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
I A+ RA D+V+D+ E++ HK ++P+V+TY ++ K V EA + F +
Sbjct: 160 IMAFARAGRIDKVRDMLEVM-----KHKGIEPDVRTYTEIINNSCKAGRVAEAYQTFIEM 214
Query: 347 Q------NYEGGTKVLHNEGNFGDPLSLY-----LRALCREGRIIELLEALEAMAKDNQP 395
Q + + + ++ + GD L + AL E +I L +A++ Q
Sbjct: 215 QDVGVQPDLKVYSALIAGFSHVGDHLKAQQLKEEMEALGLEASMITYSGMLSGLARNRQL 274
Query: 396 VPPRAMILSRKYRTLV 411
+I + K R +V
Sbjct: 275 TEMERVIEAMKKRNMV 290
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 13/233 (5%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLV--VAYTLNGDHEGAMHS--LKRELSAGV 135
ARNR + VI M + P R+ L+ ++ T+ D M +++++ A
Sbjct: 269 ARNRQLTEMERVIEAMKKRNMVPNARALGDLINRMSDTMPMDQAFNMAQALVQKKVEANA 328
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA--WLILVEELVRNKYLEDAN 193
H AL R+ KG+ IL M + ++ A + +L++ + +
Sbjct: 329 DVWH----ALLRVCAKADDVEKGIRILDVMRSHSPELVSASSYCVLIDTFAKAGRVSRGA 384
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
+ K ++ IY++ I + +S AL++ M+A G + F+ L+
Sbjct: 385 TLLAHMRKHKIKPDVSIYNVFIEGAMRETGYSKALQVFELMKAEGVRPSHTTFSILIDAA 444
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
G PE A A F M +PDT YN +I+A R D+ + V + L
Sbjct: 445 GHAGRPEEAEAHFAAMGTSP---RPDTNNYNSLIEALARNGQLDKAERVLDSL 494
>gi|222613030|gb|EEE51162.1| hypothetical protein OsJ_31934 [Oryza sativa Japonica Group]
Length = 404
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 91/249 (36%), Gaps = 44/249 (17%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHS---LKRELSAGVRPLHETLI 143
+ DV D+ A GL+P +++ L+ Y G H LK + AG+ P T
Sbjct: 144 KAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVT-- 201
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
FG +L+ +N A +VF + G
Sbjct: 202 -----FG---------------------------VLINGYCKNSNTAAAVRVFEEMKQQG 229
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
+ A+ Y+ +I+ C G +++ EME G F +L G+ A
Sbjct: 230 IAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADAN 289
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+ M E ++PD YN +I Y R + V E + K + PNV TY
Sbjct: 290 DWIDGMT--ERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMA-----KKGISPNVTTY 342
Query: 324 ALLVECFTK 332
L+ F++
Sbjct: 343 NCLITGFSR 351
>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
Length = 668
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 119/271 (43%), Gaps = 19/271 (7%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
DA + ++ D+ + L P F L+ A+ + A+ L + G+ P +
Sbjct: 208 DAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVT 267
Query: 144 ALARLFGSKGLATKG----LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
AL G+ G + LE A E I R A+ L++ VR L++A +V
Sbjct: 268 ALISALGTAGRVAEAEALFLEFFLAGE-IKPRTR-AYNALLKGYVRIGSLKNAEQVLDEM 325
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
++ G+ + Y L++ +AG +A + EMEA G +++ F+ +L+ G
Sbjct: 326 SQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDW 385
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
+ AFA M+ ++PD YN +I + + Y+ + + M E+ ++P+
Sbjct: 386 QKAFAVLREMQ--ASGVRPDRHFYNVMIDTFGK---YNCLGHAMDAFNKMREEG--IEPD 438
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
V T+ L++ K RH RA + +E
Sbjct: 439 VVTWNTLIDAHCK------GGRHDRAAELFE 463
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 116/309 (37%), Gaps = 21/309 (6%)
Query: 52 SLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDA-----------PRVNDVIYDMIAAGL 100
S L T G V A L E+ R +A V+ +M G+
Sbjct: 271 SALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGV 330
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE 160
+P ++ LV AYT G E A LK + GV+P + F +G K
Sbjct: 331 APDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFA 390
Query: 161 ILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+L M+ + D R + ++++ + L A F + + G+ ++ +I
Sbjct: 391 VLREMQASGVRPD-RHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAH 449
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
CK G H A E+ EM + T +N +++ E A M+ E + P
Sbjct: 450 CKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMK--EQGLVP 507
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
+ TY ++ Y R+ Y D E + L+P+ Y LV + +
Sbjct: 508 NIITYTTLVDVYGRSGRYKEAIDCIEAM-----KADGLKPSPTMYHALVNAYAQRGLADH 562
Query: 339 AIRHFRALQ 347
A+ +A++
Sbjct: 563 ALNVVKAMK 571
>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 829
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 20/238 (8%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P +++ L Y G + M + S GV P T + +G G L +
Sbjct: 354 PDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRL 413
Query: 162 LAAMEKI----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+ M+ + N + L ++ + R ED KV G ++ M+A
Sbjct: 414 FSLMKDLGCAPNVYTYNSVLAMLGKKSRT---EDVIKVLCEMKLNGCAPNRATWNTMLAV 470
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE---D 274
+ G H+ ++ EM+ G FN L+S A CG EV A YGE
Sbjct: 471 CSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCG-SEVDSAKM----YGEMVKS 525
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
P TYN ++ A R + + V + + K +PN +Y+LL+ C++K
Sbjct: 526 GFTPCVTTYNALLNALARRGDWKAAESVIQDMRT-----KGFKPNENSYSLLLHCYSK 578
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 113/276 (40%), Gaps = 12/276 (4%)
Query: 53 LLSTNGSVVSAAEQGLRLIF-MEELMQHARNRDAPR-VNDVIYDMIAA-GLSPGPRSFHG 109
LL G + ++Q LRL + ELM R++ + ++D+I S R++
Sbjct: 161 LLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTT 220
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA-TKGLEILAAMEKI 168
++ +Y G ++ A+ + G+ P T + ++G G + + LE+L M
Sbjct: 221 ILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSK 280
Query: 169 NYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
++ + ++ R L++A K G + Y+ M+ KAG ++ A
Sbjct: 281 GLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEA 340
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
L I EME + +N L + G + A + M + P+ TY VI
Sbjct: 341 LSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMT--SKGVMPNAITYTTVI 398
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
AY +A R D L +M + PNV TY
Sbjct: 399 DAYGKA---GREDDALRLFSLMKD--LGCAPNVYTY 429
Score = 39.3 bits (90), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 58/312 (18%), Positives = 114/312 (36%), Gaps = 25/312 (8%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M G +P +++ ++ + G H L+ + G P +T L +
Sbjct: 448 VLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYA 507
Query: 151 SKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G ++ M K + + L+ L R + A V G + +
Sbjct: 508 RCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNEN 567
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC----GIPEVAFAT 265
Y L++ KAG+ ++ E+ + L+ C G+ E AF
Sbjct: 568 SYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGM-ERAFDQ 626
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+ Y KPD N ++ + R + + + +++ + LQPN+ TY
Sbjct: 627 LQKYGY-----KPDLVVINSMLSMFARNKMFSKAREMLHFI-----HECGLQPNLFTYNC 676
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 385
L++ + + +A + +QN V+ + ++ CR+G + E +
Sbjct: 677 LMDLYVREGECWKAEEVLKGIQNSGPEPDVV--------SYNTVIKGFCRKGLMQEAIGV 728
Query: 386 LEAM-AKDNQPV 396
L M K QP
Sbjct: 729 LSEMTTKGIQPT 740
Score = 39.3 bits (90), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
E++ G T +N +L GI A + + ME ++ PD+ TYN + Y R
Sbjct: 311 ELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEME--DNNCPPDSVTYNELAATYVR 368
Query: 293 AESYDRVQDVAELLGMMVED---HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
A D GM V D K + PN TY +++ + K +A+R F +++
Sbjct: 369 AGFLDE--------GMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKD 419
>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Brachypodium distachyon]
Length = 800
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 8/243 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M +G P +++ L +Y G +E A L +S G+ P T + +G
Sbjct: 315 VLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYG 374
Query: 151 SKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+ G + L + M+K + + +++ L + ++ ++ G
Sbjct: 375 NAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRV 434
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ M+A K G + M++ G FN L+S CG AF ++ M
Sbjct: 435 TWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEM 494
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
P TYN ++ +R + Q + + ++ +PN +Y+LL++C
Sbjct: 495 TAAG--FTPCLTTYNALLSVLSRQGDWTAAQSIINKM-----KNEGFKPNDMSYSLLLQC 547
Query: 330 FTK 332
K
Sbjct: 548 HAK 550
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 111/255 (43%), Gaps = 18/255 (7%)
Query: 80 ARNRDAPRVNDV-IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP 137
A R R N +YD M AAG +P +++ L+ + GD A + + + G +P
Sbjct: 477 AYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKP 536
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYD--IRQAWLILVEELVRN---KYLEDA 192
++ +L +KG G+E A+EK Y+ + +W+IL ++ N + LE
Sbjct: 537 -NDMSYSLLLQCHAKGGNAAGIE---AIEKEVYEGTVFPSWVILRTLVISNFKCRRLEGI 592
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
+ F G + I++ M++ K G + A E+ ++ G +N ++
Sbjct: 593 ERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDM 652
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
A A + ++ + +KPD +YN V+ + + +++ +L M+ D
Sbjct: 653 YAKSNESWEAEKILKRLKTSQ--LKPDVVSYNTVMNGFCKQ---GLIKEAQRILSEMIAD 707
Query: 313 HKRLQPNVKTYALLV 327
R P V TY LV
Sbjct: 708 GVR--PCVVTYHTLV 720
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 29/245 (11%)
Query: 101 SPG--PRSFHGLVVAYTLNGDHEGAMH---SLKRELSAGVRPLHETLIALARLFGSKGLA 155
SPG R++ ++ A + G +E A+ LKRE GV P H + ++G G +
Sbjct: 182 SPGLDVRAYTTVLHALSHEGRYERALELFAELKRE---GVAPTHVMYNVMLDVYGRMGRS 238
Query: 156 TKGLEILAAMEKINYDIRQAWL--------ILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+I+A +E ++R A + ++ R+ +++A F G
Sbjct: 239 WP--QIVAMLE----EMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPC 292
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ ++ KAG++ AL + EME +G +N L A G E A +
Sbjct: 293 VVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLD 352
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M + P+ TYN ++ AY A +V + L M ++ P V TY L++
Sbjct: 353 TMV--SKGILPNAFTYNTIMTAYGNA---GKVDEALALFDWMKKNG--FIPYVNTYNLIL 405
Query: 328 ECFTK 332
K
Sbjct: 406 GMLGK 410
>gi|168052832|ref|XP_001778843.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669712|gb|EDQ56293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 953
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 146/343 (42%), Gaps = 53/343 (15%)
Query: 152 KGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
+G ++GL+ L M+ N ++ ++ + E R +++A ++ + G++ T
Sbjct: 475 QGKISQGLDFLDEMQVRNLELSSFSFNPFIREFGRWTMIDEAFEMKAAMLRLGVQPTVVT 534
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ +I+ K GD A + EM+ G A T +N L+ A G + A A +M+
Sbjct: 535 YNSLISACVKIGDLERACSLFPEMKELGVEANTHCYNPLIQGFAMQGRFDRALAVMRSMD 594
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+KPD TY +I A + ++ D+ +L M E + ++P+ Y +++ +
Sbjct: 595 AAG--VKPDVNTYRLLIFACSLSKDQDKAD---QLFAEMQE--REIRPDESIYTVMIIVY 647
Query: 331 TKYCAVTEAIRHFRALQ------NYEGGTKVLHN---EGNFGDPLSLY------------ 369
+K V I R+L+ E + +LH G + L+LY
Sbjct: 648 SKCGNVDRGIEMIRSLEKSGETAGIEAKSAILHGLAVTGRLEEALALYAVFKRERLLPHS 707
Query: 370 ------LRALCREGRIIELLEALEAMAKDNQ----PVPPRAMILS-RKYRTLVS------ 412
L AL + G + ++ E E D + + RA L+ R ++++
Sbjct: 708 YAVGTLLAALGKVGDLDKMFELFEDARGDGKWPFMNLRQRAEHLNIRCINSVLACIRHNQ 767
Query: 413 -----SWIEPLQEE--AELGYEIDYIARYISEGGLTGERKRWV 448
S++ ++EE A+ G D I +IS GG RW+
Sbjct: 768 LGRAISFLRKVKEEGIADEGVLFDKIFLHISTGGQDENEMRWL 810
>gi|326511196|dbj|BAJ87612.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 725
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 86/218 (39%), Gaps = 46/218 (21%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHS---LKRELSAGVRPLHETLI 143
+ D M G+ S+ L+ AY ++G +E A + +KRE G++P ET
Sbjct: 467 KAEDAFLRMKKGGIKATSSSYTSLICAYAVSGQYEKAHIAYLDMKRE---GLKPSLETYT 523
Query: 144 ALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
AL +F G K +E +M EK+ R + ++++ L ++ A V K
Sbjct: 524 ALLDIFRRAGNTEKLMETWKSMTDEKVGC-TRVTFHMVLDGLAKHGLFVQARDVICEFGK 582
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
GL T Y++++ K G H ++ EM
Sbjct: 583 IGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEM--------------------------- 615
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 299
+T E +KPD+ TY+ +I AY R + R
Sbjct: 616 --STLE--------LKPDSVTYSTLIYAYARVRDFSRA 643
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 11/182 (6%)
Query: 160 EILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+I +MEK N D + ++L+ R +D+ K F R + G++ + + +I
Sbjct: 293 KIFESMEKNNVQPDHVTSSIMLLVMKRRKASAKDSWKFFQRMNRKGVKWSLGVSASLIKI 352
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
C G AL EM G + T +N +++ C E A F M+ E +K
Sbjct: 353 FCDEGMKKEALIFQSEMGKRGIPSNTSIYNTIMNVYCKCSQIEEAEGLFAEMK--EKGLK 410
Query: 278 PDTETYNCVIQAYTRAESYDRVQ-DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
P TYN ++ AY+R R+Q +V E L + + D QPN ++Y L+ + + +
Sbjct: 411 PTKVTYNILMDAYSR-----RLQPEVVESLLLEMHDLG-FQPNARSYNCLISAYGRQKKM 464
Query: 337 TE 338
+E
Sbjct: 465 SE 466
Score = 40.0 bits (92), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 82/208 (39%), Gaps = 41/208 (19%)
Query: 174 QAWLILVEELVRNKYL-EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
+++ L+ R K + E A FLR KGG++AT Y +I +G + A IAY
Sbjct: 449 RSYNCLISAYGRQKKMSEKAEDAFLRMKKGGIKATSSSYTSLICAYAVSGQYEKA-HIAY 507
Query: 233 -EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM---------------------- 269
+M+ G + + LL G E T+++M
Sbjct: 508 LDMKREGLKPSLETYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKH 567
Query: 270 -----------EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E+G+ + P TYN ++ AY + + ++ + + + + L+P
Sbjct: 568 GLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTL-----ELKP 622
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ TY+ L+ + + + A + + +
Sbjct: 623 DSVTYSTLIYAYARVRDFSRAFYYHKQM 650
>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 827
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 108/273 (39%), Gaps = 40/273 (14%)
Query: 69 RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLN----------- 117
++ F L + ++R +V+ +M +G SP +++ L+ AY +
Sbjct: 323 KVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKD 382
Query: 118 ------------------------GDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
G E AM +AG +P T AL ++ G++G
Sbjct: 383 QMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRG 442
Query: 154 LATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
+ +++ +E N DI W L+ +N + + VF + G + +
Sbjct: 443 RFAEMMKVFEEIEICNCAPDI-VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTF 501
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+ +I+ + G A+ + M AG +N +L+ A G+ E + F M+
Sbjct: 502 NTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKD 561
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
G KP+ TY ++ AY ++ +R+ +AE
Sbjct: 562 GR--CKPNELTYCSLLHAYANSKEIERMHTLAE 592
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 16/196 (8%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILA-- 163
++ L+ AY NG + A+ K+ G +P T + ++G G+ + L
Sbjct: 219 AYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHG 278
Query: 164 ------AMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
A + Y+ L+ R E+A +VF G ++ ++
Sbjct: 279 MKSSGVAPDDYTYNT------LISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDV 332
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
K+ A+E+ EME +G + +N L+S A G+ A + M E +K
Sbjct: 333 YGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMV--EKGIK 390
Query: 278 PDTETYNCVIQAYTRA 293
PD TY ++ + +A
Sbjct: 391 PDVFTYTTLLSGFEKA 406
>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 642
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 8/216 (3%)
Query: 133 AGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLED 191
G+ P T L F K L +L M++ + A+ L+ L + K E
Sbjct: 404 CGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEA 463
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
AN++FL + ++ +Y +MI K G S A+++ EME G + +N L+S
Sbjct: 464 ANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMS 523
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
G+ + A + M+ E+ PD ++N ++ R DR E+ M
Sbjct: 524 GMVRAGMIDEAQSLLRTMD--ENGCSPDLNSHNIILNGLARTGVPDR---AIEMFAKM-- 576
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
++P+ +Y ++ C + EA + R +
Sbjct: 577 KSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMN 612
Score = 40.0 bits (92), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 22/236 (9%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ + + + A ++F + GL T +IY ++ K AL++ EM+ G
Sbjct: 240 LISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKG 299
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
T F + + G + A+ F +M +D KPD N +I + R
Sbjct: 300 CTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMI--KDGCKPDVVLINSLINILGKV---GR 354
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVEC-FTKYCAVTEAIRHFRALQNYEGGTKVLH 357
++ +L M + + +PNV TY +++ F +EA F ++ G +
Sbjct: 355 LEVTLKLFRKM--ESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMK----GCGIAP 408
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSS 413
+ + S+ + C+ RI + L LE M + P P A Y +L++S
Sbjct: 409 SSFTY----SILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAA------YCSLINS 454
>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
Length = 1184
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 98/257 (38%), Gaps = 9/257 (3%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
+++ + P R F L+ + G A L + AG+ P L +
Sbjct: 224 VFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAH 283
Query: 152 KGLATKGLEILAAMEKINYDIR-QAWLILVEELVRN-KYLEDANKVFLRGAKGGLRATDE 209
G +++ M K ++ + +L++ L R K +++A +VF+ + G A
Sbjct: 284 AGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIV 343
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y +I+ CK G + +M G M + + ++ E E M
Sbjct: 344 TYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKM 403
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ PD YN VI+ A V++ L M + L P V T+ +++
Sbjct: 404 K--RRGCHPDLLIYNVVIRL---ACKLGEVKEAVRLWNEM--EANGLSPGVDTFVIMING 456
Query: 330 FTKYCAVTEAIRHFRAL 346
FT + EA HF+ +
Sbjct: 457 FTSQGFLIEACNHFKEM 473
>gi|242091740|ref|XP_002436360.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
gi|241914583|gb|EER87727.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
Length = 999
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 107/253 (42%), Gaps = 9/253 (3%)
Query: 97 AAGLSP-GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA 155
A+ L P G ++ +V A+ G E A H + G T+ L G
Sbjct: 669 ASALFPEGANVYNAMVDAFCKCGKTEDAYHLFMEMVDQGSNRDAVTVSILVTHLTKHGKL 728
Query: 156 TKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+ I M Q + +++ + L+ A ++F + GL +++Y M
Sbjct: 729 HSAISIYDRMISSGTSQSMQTFNLMISVFGKGGKLDKAVEMFAAAQELGLPIDEKMYTNM 788
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
++ KAG H A + M+ G FN +++ AT G+ A +TF M+ +
Sbjct: 789 LSLYGKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQ--DC 846
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
PD+ +Y +I+AYT A+ Y + E + MM+ + P+ ++ L+ F K
Sbjct: 847 GHAPDSFSYLALIRAYTEAKLY---MEAEEAIRMML--NSSTTPSCPHFSHLIFAFLKEG 901
Query: 335 AVTEAIRHFRALQ 347
+ EA R + ++
Sbjct: 902 QIGEAQRIYNQMK 914
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 112/271 (41%), Gaps = 11/271 (4%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ DV +M P ++ L+ A + +G E A+ + + G+ P + T +L
Sbjct: 297 KAMDVFGEMRQCRFVPEEATYSLLISASSRHGKGEQALRLFEEMKAQGIVPSNYTCASLL 356
Query: 147 RLFGSKGLATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
L+ +K L +L+ ME K+ D + IL+ + E+A + F + K GL
Sbjct: 357 ALYYKNEDYSKALSLLSEMENSKVIPD-EVIYGILIRIYGKLGLYEEAEQTFEKIEKAGL 415
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ ++ Y M AGD+ ALE+ M + F ++ +L C A
Sbjct: 416 LSDEQTYVAMAQVHLNAGDYDRALEVLESMMMRNVKPSHFSYSAILRCYVAKEDIVAAED 475
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
TF + + PD N +++ Y R ++ + L+ M ED RL ++
Sbjct: 476 TFRAL---SQHGLPDVFCCNDLLRLYMRLGHLEKAR---ALVLKMREDDFRLDEDLSMTV 529
Query: 325 LLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
+ C K + +A + F+ +Q K+
Sbjct: 530 MKFYC--KSNMINDAEKIFKDIQRNNKTVKI 558
>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 794
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 111/277 (40%), Gaps = 22/277 (7%)
Query: 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSF----HGLVVAYTLNGDHEGAMHSLKRELSA 133
+ + + R D++ M G P ++ HGL+VA G+ + A+ + +
Sbjct: 356 NYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVA----GEVDVALTVRNKMVEK 411
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLI---LVEELVRNKYLE 190
GV P L KG +LA M ++ ++ I LV+ +R+ E
Sbjct: 412 GVLPDANIYNVLMSGLCKKGRLPAAKVLLAEM--LDQNVAPDAFITATLVDGFIRHGDFE 469
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+A K+F + G+ Y+ MI CK G +AL M F ++ ++
Sbjct: 470 EAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTII 529
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGMM 309
A F M G KP+ TY +I + + +R + ++L +
Sbjct: 530 DGYIKMNDLHGALRMFGLMVKGA--CKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSL- 586
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
RL+PNV TY +L+ CF K +T+A F +
Sbjct: 587 -----RLKPNVVTYTILIGCFCKGVNLTKACSFFEQM 618
>gi|356567150|ref|XP_003551784.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Glycine max]
Length = 875
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y ++A KA +AL I EM+ +N L+ A G E A F+ ME
Sbjct: 369 YSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYANLGWFEEAVGKFKEME 428
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+K D TYN +I+ Y R Y V+ + + + +R+ PN TY+ L++ +
Sbjct: 429 CCG--IKNDVVTYNALIEGYGRHNKYVEVRKLFDEM-----KARRIYPNDLTYSTLIKIY 481
Query: 331 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
TK EA+ +R L+ T V+ S + ALC+ G I L L+ M
Sbjct: 482 TKGRMYAEAMDVYRELKQEGMKTDVVF--------YSALIDALCKNGLIESSLRLLDVMT 533
Query: 391 -KDNQP 395
K ++P
Sbjct: 534 EKGSRP 539
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 130/320 (40%), Gaps = 26/320 (8%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IAL 145
R ++ MI G P F+ L+ AY + D+ A K+ + G +P + I +
Sbjct: 332 RCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFI 391
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRN--------KYLEDANKVFL 197
+ ++ + +IL +EK ++ ++L + V N + A K+
Sbjct: 392 GSVCSNEEQPSS--DILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIIC 449
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
G D Y +I C A A + EM+ G + + + + L+ G
Sbjct: 450 EMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAG 509
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+ + A F+ M + P+ TY +I AY +A+ ++ E+ M++E K
Sbjct: 510 LIQQARKWFDEMLHKG--CTPNVVTYTALIHAYLKAKQMPVADELFEM--MLLEGCK--- 562
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQ------NYEGGTKVLHN--EGNFGDPLSLY 369
PNV TY L++ K + +A + + ++ + + K+ HN EG
Sbjct: 563 PNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGAL 622
Query: 370 LRALCREGRIIELLEALEAM 389
+ LC+ R+ E E L+ M
Sbjct: 623 VDGLCKANRVKEAHELLDTM 642
Score = 39.7 bits (91), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 51/268 (19%), Positives = 99/268 (36%), Gaps = 24/268 (8%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+ G +P ++ L+ AY A + L G +P T AL G
Sbjct: 520 EMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAG 579
Query: 154 LATKGLEILAAME------------KINYDIRQA-----WLILVEELVRNKYLEDANKVF 196
K +I A M K++++ + + LV+ L + +++A+++
Sbjct: 580 QIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELL 639
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
G +YD +I CK G +A E+ +M G + ++ + C
Sbjct: 640 DTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKD 699
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
++ M E+ P+ Y ++ + D + M+ + K
Sbjct: 700 NRLDLVLKVLSKML--ENSCTPNVVIYTEMVDGLCKIGKTDEAYKL-----MLKMEEKGC 752
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFR 344
PNV TY +++ F K + + + FR
Sbjct: 753 NPNVVTYTAMIDGFGKSGKIEQCLELFR 780
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 101/264 (38%), Gaps = 40/264 (15%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
+++ L + + A ++F GL + +Y +I CKA ALE+ +M+ A
Sbjct: 180 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 239
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
T +N L+ G A A F+ M E KPD TYN +I + +A + D
Sbjct: 240 CTPDTITYNILIDGLCKSGDVAAARAFFDEML--EAGCKPDVYTYNILISGFCKAGNTDA 297
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN---------Y 349
V + + R PNV TY L+ K +T+A +++ ++ Y
Sbjct: 298 ACGVFDDM-----SSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVY 352
Query: 350 EGGTKVLHNEGNFGDPLSLY-----------------LRALCREGRIIELLEALEAMAKD 392
L G L+ + LC+ R+ E + A+ K+
Sbjct: 353 SSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKE 412
Query: 393 NQPVPPRAMILSRKYRTLVSSWIE 416
P P Y +++S+ I+
Sbjct: 413 GMPHP-------YAYNSIISALIK 429
>gi|359490245|ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Vitis vinifera]
Length = 1101
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 81/376 (21%), Positives = 147/376 (39%), Gaps = 40/376 (10%)
Query: 44 RRQQKHGDSLLSTNGSVVSAAEQGLRL------IFMEELMQHARNRDAPRV-NDVIYDMI 96
RR K S+ +V AA +GL L + + +L+ +R A V D + I
Sbjct: 64 RRMIKQSPSVSDAILAVEFAAARGLELDSCGYGVLLRKLVGSGEHRFAEAVYRDYV---I 120
Query: 97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156
A G+ P + + +V+ Y G E AM R P A+ R ++
Sbjct: 121 ARGIIPDSETLNSMVICYCNLGKLEEAMAHFDRLFEVDSFPCKPACNAMLRELCARERVL 180
Query: 157 KGLEILAAMEKINYDIRQAWLI--LVEELVRNKYLEDANKVF--LRGAKGGLRATDEIYD 212
+ + + + + W L++ L ++++A +F +R + GL AT +Y
Sbjct: 181 EAFDYFVRINDVGI-LMGLWCFNRLIDGLCDKGHVDEAFYMFDTMR-ERTGLPATIHLYK 238
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EY 271
+ C+ A EME+ G + L+ A F M +
Sbjct: 239 TLFYGLCRQERVEEAELFVGEMESEGHFIDKMMYTSLIHGYCRGKKMRTAMRVFLRMLKM 298
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR---LQPNVKTYALLVE 328
G D PDT TYN +I + + +D+ G ++ + LQPNV TY +++
Sbjct: 299 GCD---PDTYTYNTLIHGFVKLGLFDK--------GWILHNQMSEWGLQPNVVTYHIMIR 347
Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 388
+ + V A+ ++ ++ V ++ + AL +E R++E+ E +
Sbjct: 348 RYCEEGKVDCALTLLSSMSSFNLTPSV--------HSYTVLITALYKENRLVEVEELYKK 399
Query: 389 MAKDNQPVPPRAMILS 404
M D VP + +
Sbjct: 400 ML-DIGVVPDHVLFFT 414
>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 583
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 17/231 (7%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ LV L R K + + + A G++ + + MI ++G A++I +M
Sbjct: 59 TYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKM 118
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G TT +N L+ G P + E M E+ +KP+ TYN +IQA+
Sbjct: 119 KEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDEN-VKPNDRTYNILIQAWC--- 174
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354
+ ++++ +L MV +QP+V TY + + + A R +
Sbjct: 175 TKKKLEEAWNVLHKMVASG--IQPDVVTYNTMARAYAQNGETERAERLILKMPY----NI 228
Query: 355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK---DNQPVPPRAMI 402
V NE G +S Y C+EG + E L L M + D PV ++I
Sbjct: 229 VKPNERTCGIIISGY----CKEGNMPEALRFLYRMKELGVDPNPVVFNSLI 275
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 3/162 (1%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ + + P +Y M G+ P P F+ L+ Y D G +L G++P
Sbjct: 243 YCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPD 302
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVF 196
T + + S GL EI M K I DI A+ IL + VR A +
Sbjct: 303 VVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDI-HAYSILAKGYVRAGQPRKAEALL 361
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
+K G++ I+ +I+ C AG A + +M G
Sbjct: 362 TSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMG 403
Score = 46.2 bits (108), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 102/244 (41%), Gaps = 18/244 (7%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V++ M+A+G+ P +++ + AY NG+ E A + + V+P T + +
Sbjct: 184 NVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNERTCGIIISGY 243
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE--DANKV---FLRGAKGGL 204
+G + L L M+++ D ++ L++ YL+ D N V + G+
Sbjct: 244 CKEGNMPEALRFLYRMKELGVDPNP---VVFNSLIKG-YLDTTDTNGVDEALTLMEEFGI 299
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ + ++ AG N EI +M AG ++ L G P A A
Sbjct: 300 KPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEA 359
Query: 265 TFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+M +YG ++P+ + +I + A DR + E + M PN+KTY
Sbjct: 360 LLTSMSKYG---VQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEM-----GTSPNLKTY 411
Query: 324 ALLV 327
L+
Sbjct: 412 ETLI 415
Score = 45.8 bits (107), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 110/259 (42%), Gaps = 18/259 (6%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
+ P R+++ L+ A+ E A + L + +++G++P T +AR + G +
Sbjct: 159 VKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAE 218
Query: 160 EILAAMEKINYDI----RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
++ M Y+I + I++ + + +A + R + G+ +++ +I
Sbjct: 219 RLILKMP---YNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLI 275
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
D + E ME G F+ +++ ++ G+ E F +M +
Sbjct: 276 KGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMV--KAG 333
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
++PD Y+ + + Y RA + + A L M +QPNV + ++ + +CA
Sbjct: 334 IEPDIHAYSILAKGYVRAGQPRKAE--ALLTSM---SKYGVQPNVVIFTTII---SGWCA 385
Query: 336 VTEAIRHFRALQN-YEGGT 353
+ R FR + +E GT
Sbjct: 386 AGKMDRAFRLCEKMHEMGT 404
>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 614
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 119/287 (41%), Gaps = 60/287 (20%)
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFL 197
ET+ + R G + + +EK I+ D A +L++ LV+ +EDA+ VF
Sbjct: 266 ETMSKVIRRLARAGRHQEAIHAFRNIEKYGISTDT-TAMNVLMDALVKEASVEDAHNVF- 323
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
R K + ++++I CKA A +I E+E +G
Sbjct: 324 RELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIMGEVEKSG------------------- 364
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
++PD +Y I+A+ R + + V V L+ M +HK +
Sbjct: 365 ------------------LEPDVISYTAFIEAHCREKDFRNVDKV--LVQM---EHKGCK 401
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
PNV T+ +++ K + EA++ + ++ EG + +F L + L + G
Sbjct: 402 PNVITFTIIMHALGKAKQINEALKVYEKMKK-EGCVP----DSSFYSSL---IFILGKAG 453
Query: 378 RIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAEL 424
R+ ++ E +E M K Q V P + Y TL+S QEE L
Sbjct: 454 RLTDVKEIVEDMEK--QGVTPDVLT----YNTLISCACAHSQEETAL 494
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ I++ L + K + +A KV+ + K G Y +I KAG ++ EI +M
Sbjct: 406 TFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDM 465
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
E G +N L+SC E A ME E KPD +TY+ +++ + R +
Sbjct: 466 EKQGVTPDVLTYNTLISCACAHSQEETALTLLLKME--EVSCKPDLKTYHPLLKMFCRKK 523
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
R++ + LL M ++ ++ TYA+LV
Sbjct: 524 ---RMKVLKFLLDHMFKNDVSIEAG--TYAILV 551
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 9/208 (4%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
+ +MIA GL P ++ + Y G+ + A S L +G+ P L +
Sbjct: 535 LVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCK 594
Query: 152 KGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G TK M + + D+ Q +L+ L +N L++A VF GL
Sbjct: 595 DGNTTKAFAKFRCMLDQGVLPDV-QTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVF 653
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA--TFE 267
Y +I+ CK GD A E+ +M G +N L++ C + E+A A F+
Sbjct: 654 TYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALIN--GLCKLGEIAKARELFD 711
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAES 295
+ E + ++ TY+ +I Y ++ +
Sbjct: 712 GIP--EKGLARNSVTYSTIIAGYCKSAN 737
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 114/282 (40%), Gaps = 27/282 (9%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G+ P ++ L+ + NG + AM L G+ P T +L +G
Sbjct: 608 MLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGD 667
Query: 155 ATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
E+ M K IN +I + L+ L + + A ++F + GL Y
Sbjct: 668 LKAAFELHDDMCKKGINPNI-VTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYS 726
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EY 271
+IA CK+ + + A ++ + M+ G +F + L+ G E A + F M E
Sbjct: 727 TIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEE 786
Query: 272 GEDYMKPDTETYNCVIQAYTR----AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
G T +N +I + + E+Y V+D MV++H + PN TY +L+
Sbjct: 787 G----IASTPAFNALIDGFFKLGKLIEAYQLVED-------MVDNH--ITPNHVTYTILI 833
Query: 328 ECFTKYCAVTEAIRHFRALQ------NYEGGTKVLHNEGNFG 363
E + EA + F +Q N T +LH G
Sbjct: 834 EYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIG 875
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 113/287 (39%), Gaps = 13/287 (4%)
Query: 62 SAAEQGL---RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG 118
S A +GL I+ + R + + ++ +M GL P ++ L+ +
Sbjct: 292 SMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQS 351
Query: 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILA--AMEKINYDIRQAW 176
D GA + + ++ T AL G K ++ + M I DI Q +
Sbjct: 352 DIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDI-QTY 410
Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
L+E + + +E A ++ + K L A + ++ C GD + A E+ EM +
Sbjct: 411 NCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMIS 470
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
G + ++ G E A M+ + + PD YN VI + +A
Sbjct: 471 WGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMK--DQGLSPDVFCYNTVIIGFCKA--- 525
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
++++ L M+ K L+PNV TY + + + + A R F
Sbjct: 526 GKMEEGKSYLVEMIA--KGLKPNVYTYGAFIHGYCRAGEMQAAERSF 570
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 130/348 (37%), Gaps = 32/348 (9%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
+Y + + P ++ L+ AY G E H L G P T +
Sbjct: 220 VYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCR 279
Query: 152 KGLATKGLEILAAMEKI-----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
G + LE+ +M NY + L++ R K + + GL+
Sbjct: 280 AGDVDEALELKRSMANKGLLPDNY----IYATLIDGFCRQKRSTEGKSMLDEMYTMGLKP 335
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y +I K D A ++ EM A TF + L+ G E A F
Sbjct: 336 DHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLF 395
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK-RLQPNVKTYAL 325
M +KPD +TYNC+I E Y +VQ++ + +++E K L N
Sbjct: 396 SEMTMMG--IKPDIQTYNCLI------EGYYKVQNMEKAYELLIEIKKENLTANAYMCGA 447
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 385
+V +T A F+ + ++ ++ + ++ L +EGR E ++
Sbjct: 448 IVNGLCHCGDLTRANELFQEMISWGLKPNIV--------IYTTIVKGLVKEGRFEEAIKI 499
Query: 386 LEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIAR 433
L M KD Q + P Y T++ + + + E Y ++ IA+
Sbjct: 500 LGVM-KD-QGLSPDVFC----YNTVIIGFCKAGKMEEGKSYLVEMIAK 541
Score = 40.4 bits (93), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 103/255 (40%), Gaps = 11/255 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
++N V +++ GL P ++ L+ GD + A G+ P
Sbjct: 628 SKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNI 687
Query: 140 ETLIALARLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
T AL G K E+ + EK + ++ ++ L +A ++F
Sbjct: 688 VTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHG 747
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G+ +Y +I CKAG+ AL + M G +A+T FN L+ G
Sbjct: 748 MKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEG-IASTPAFNALIDGFFKLGK 806
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR-LQ 317
A+ E+M ++++ P+ TY +I E + V ++ E + +E KR +
Sbjct: 807 LIEAYQLVEDMV--DNHITPNHVTYTILI------EYHCTVGNIKEAEQLFMEMQKRNVM 858
Query: 318 PNVKTYALLVECFTK 332
PNV TY L+ + +
Sbjct: 859 PNVLTYTSLLHGYNR 873
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 96/251 (38%), Gaps = 43/251 (17%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+++ D + G P ++ L+ GD E A+ + G++P +L +
Sbjct: 311 ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGL 370
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+GL L+++ M A+ G +
Sbjct: 371 CLQGLILHALQVMNEM----------------------------------AEEGCHPDIQ 396
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y+++I CK G+ S+A + + G + F FN L+ + A E M
Sbjct: 397 TYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM 456
Query: 270 -EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
EYG + PDT TYN V+ +A +V +V E M+ K PN TY +L+E
Sbjct: 457 WEYG---IAPDTITYNSVLNGLCKA---GKVNEVNETFQEMIL--KGCHPNPITYNILIE 508
Query: 329 CFTKYCAVTEA 339
F + + EA
Sbjct: 509 NFCRSNKMEEA 519
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 104/265 (39%), Gaps = 36/265 (13%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ D I G P +F+ L+ Y + A+ ++R G+ P T ++
Sbjct: 417 VMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLC 476
Query: 151 SKGLATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
G + E M I Y+I L+E R+ +E+A+KV ++ ++ G
Sbjct: 477 KAGKVNEVNETFQEMILKGCHPNPITYNI------LIENFCRSNKMEEASKVIVKMSQEG 530
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
L ++ +I C+ GD A + ++E G AT FN L+ AF
Sbjct: 531 LHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIG----------AF 580
Query: 264 ATFENMEYGEDYM--------KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
+ NM E + D+ TY +I + + DR L+ M+ K
Sbjct: 581 SGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRA--YMHLVEMI---KKG 635
Query: 316 LQPNVKTYALLVECFTKYCAVTEAI 340
P++ T+ ++ T V +A+
Sbjct: 636 FIPSMSTFGRVINSLTVNHRVFQAV 660
Score = 40.0 bits (92), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 88/232 (37%), Gaps = 20/232 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
+++ + +++A ++ G Y +I C GD ALE+ E +A G
Sbjct: 296 IIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKG 355
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+N L+ G+ A M E+ PD +TYN VI +
Sbjct: 356 IKPDIVVYNSLVKGLCLQGLILHALQVMNEM--AEEGCHPDIQTYNIVINGLCKM---GN 410
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
+ D ++ + K P+V T+ L++ + K + A++ + Y
Sbjct: 411 ISDATVVMNDAIM--KGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY--------- 459
Query: 359 EGNFGDPLSL--YLRALCREGRIIELLEALEAMA-KDNQPVPPRAMILSRKY 407
G D ++ L LC+ G++ E+ E + M K P P IL +
Sbjct: 460 -GIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENF 510
>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
[Vitis vinifera]
gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 118/312 (37%), Gaps = 43/312 (13%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
F+ + + + D + V DM G SP S L+ AY + A +R L
Sbjct: 143 FLMLVTAYGKQGDFNKAERVFGDMHKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRML 202
Query: 132 SAGVRPLHETLIALARLF--GSKGL-ATKGLEILAAMEKI-------------------- 168
S+G P T + ++F G+K A + E L EK
Sbjct: 203 SSGPEPSALTYQLILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAG 262
Query: 169 NYDIRQAWLILVEE-------LVRNKYL------EDANKVFLRGAKGGLRATDEIYDLMI 215
NY+ + L+ E + N + ++ +K + + + GLR Y L+I
Sbjct: 263 NYEKARKIFGLMRERGVPQSTVTYNSLMSFETNYKEVSKTYDQMQRAGLRPDVVSYALLI 322
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
KA AL + EM AG T +N LL A G+ + A F++M D
Sbjct: 323 NAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMR--RDR 380
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
PD +Y ++ AY A + + L +PNV TY L++ + K
Sbjct: 381 CTPDICSYTTMLSAYVNASDMEGAEKFFRRL-----KQDGFEPNVVTYGTLIKGYAKISN 435
Query: 336 VTEAIRHFRALQ 347
+ + + + +Q
Sbjct: 436 LEKMMEKYEEMQ 447
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 7/206 (3%)
Query: 93 YD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
YD M AGL P S+ L+ AY E A+ + L AGVRP H+ L F
Sbjct: 303 YDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 362
Query: 152 KGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G+ + + +M ++ DI ++ ++ V +E A K F R + G
Sbjct: 363 SGMVDQARTVFKSMRRDRCTPDI-CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVV 421
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y +I K + +E EM+ G A + ++ + A F
Sbjct: 422 TYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMMDAYGKN--KDFGSAVFWFK 479
Query: 270 EYGEDYMKPDTETYNCVIQ-AYTRAE 294
E G + PD + N ++ A T AE
Sbjct: 480 EMGFCGVPPDRKATNILLSLAKTEAE 505
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 27/245 (11%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M G+ P ++ LV G + A+ + L G +P T AL +L G +G
Sbjct: 342 EMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRG 401
Query: 154 LATKGLEILAAMEKINYDIRQA--------WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
K E++ + +IR A W L+ +N + + VF K G
Sbjct: 402 ---KFPEMMIVFD----EIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYV 454
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA--- 262
+ Y +I+ + G A+EI M AG +N +LS A G E A
Sbjct: 455 PERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKL 514
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE-LLGMMVEDHKRLQPNVK 321
FA EN++ +PD +Y+ ++ AY A+ D+++ ++E + +E H L VK
Sbjct: 515 FAEMENLD-----SRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGL---VK 566
Query: 322 TYALL 326
T L+
Sbjct: 567 TLVLV 571
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 126/332 (37%), Gaps = 59/332 (17%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP----LHETLI 143
V+ V +M +G P ++ L+ +Y+ G + AM KR + AG+ P + L
Sbjct: 441 VSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLS 500
Query: 144 ALAR---------LFG---------------SKGLATKGLEILAAMEKINYDIRQ----- 174
ALAR LF S A + L M+ ++ DI
Sbjct: 501 ALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIES 560
Query: 175 -----AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229
L+LV V N L D K FL + + + MI+ K G E
Sbjct: 561 HNGLVKTLVLVNSKVNN--LSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEE 618
Query: 230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNCVI 287
I M+ + +T +N L+ + G E EN+ E +PD +YN +I
Sbjct: 619 ILSLMKESSINLSTATYNSLMHMYSRLGDCE----KCENILTEIKSSRARPDRYSYNTMI 674
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
AY R ++++ + L M L P++ TY + V+ + EAI R +
Sbjct: 675 YAYGRK---GQMKEASRLFSEM--KCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMV 729
Query: 348 NYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 379
+ G K NE + L Y C GRI
Sbjct: 730 TH--GCK--PNERTYNTILQEY----CSHGRI 753
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 10/161 (6%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK-AGDHSNALEIAY 232
A+ L+ L R DA VF R G+ Y++++ K A L +
Sbjct: 177 SAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLALVD 236
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
M G + +N L+SC + + A F+ M +PD T N ++ Y +
Sbjct: 237 SMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAG--FEPDKVTLNSLLDVYGK 294
Query: 293 AESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVECFTK 332
A YD E +G++ E + P+V TY L+ + K
Sbjct: 295 ARRYD------EAIGVLKEMEQGGCPPSVVTYNSLISSYVK 329
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 129/310 (41%), Gaps = 19/310 (6%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ +M++ G+SP ++ L+ + G + A+ + + ++P T L F
Sbjct: 218 DLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGF 277
Query: 150 GSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G +G + A M K I ++ + L++ K + A + ++ G+
Sbjct: 278 CKDGKMKEGKTVFAMMMKQGIKPNVV-TYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPD 336
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
+ Y+++I CK A+ + EM + +N L+ C + ++++A
Sbjct: 337 IQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLI--DGLCKLGKISYALKL 394
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
E + + PD TY+ ++ A + D+ A L ++D + ++PN+ TY +L+
Sbjct: 395 VDEMHDRGVPPDIITYSSILDALCKNHQVDK----AIALLTKLKD-QGIRPNMYTYTILI 449
Query: 328 ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
+ K + +A F L G + N ++ + C +G E L L
Sbjct: 450 DGLCKGGRLEDAHNIFEDL--LVKGYNITVNT------YTVMIHGFCNKGLFDEALALLS 501
Query: 388 AMAKDNQPVP 397
M KDN +P
Sbjct: 502 KM-KDNSCIP 510
>gi|326494062|dbj|BAJ85493.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 567
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 108/248 (43%), Gaps = 19/248 (7%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V MI++G P + G +V + G HS+ L+A + + AL L G
Sbjct: 283 VCEKMISSGCFPDGKK-TGEIVTFFCQGKMVTEAHSVY--LAAKEKKVQIPTSALDFLVG 339
Query: 151 SKGLATKGLEILAAMEKIN-------YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
+ LA I A+E + +++ ++ L R K + DA K+ +R G
Sbjct: 340 A--LAKNDATITTALELLGEYKGDSLKHAGKSFAAVIHSLCRMKNVNDAKKLLMRMVNLG 397
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
+++ +I K G+ +A ++ ME+ G + ++ ++S A G+ + A
Sbjct: 398 PAPGSAVFNFVITGLSKEGEMEDAKDLIRVMESRGLRPDVYTYSVIMSGYAKGGMIDEAH 457
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+ E + + KP TY+ +I+ Y + E +++ E L M ED LQPN+ Y
Sbjct: 458 SLLR--EAKKIHPKPSRVTYHILIRGYCKMEEFEK---ALECLKEMKEDG--LQPNMDEY 510
Query: 324 ALLVECFT 331
L++
Sbjct: 511 NKLIQSLC 518
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 11/241 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS-AGVRPLHETLIALARL 148
DV+ +M P ++ L+ A++ +H M +L +++ G P L R
Sbjct: 154 DVVQNMRKFKFRPAFSAYTTLIGAFSAV-NHSDMMLTLFQQMQELGYEPTVHLFTTLIRG 212
Query: 149 FGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
F +G L +L M+ + D + + ++ + ++ A K F GL+
Sbjct: 213 FAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPD 272
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
+ Y MI CKA A+E+ +E R+ T+ +N ++ + G + A++ E
Sbjct: 273 EVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
P YNC++ + D V E E K PN+ TY +L+
Sbjct: 333 RQRAKGSI--PSVIAYNCILTCLRKMGKVDEALRVFE------EMKKDAAPNLSTYNILI 384
Query: 328 E 328
+
Sbjct: 385 D 385
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 61/317 (19%), Positives = 118/317 (37%), Gaps = 17/317 (5%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L+ AR R+ ++ ++ +M AG P + +V++ ++
Sbjct: 105 LLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKF 164
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANK 194
RP L F + + L + M+++ Y+ + L+ + ++ A
Sbjct: 165 RPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALS 224
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+ L A +Y++ I K G A + +E+EA G + ++
Sbjct: 225 LLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLC 284
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
+ A FE++E ++ P T YN +I Y A +D + E + K
Sbjct: 285 KANRLDEAVEMFEHLE--KNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER-----QRAK 337
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 374
P+V Y ++ C K V EA+R F ++ +N + + LC
Sbjct: 338 GSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNLSTYN---------ILIDMLC 388
Query: 375 REGRIIELLEALEAMAK 391
R G++ E ++M K
Sbjct: 389 RAGKLDCAFELRDSMQK 405
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 111/267 (41%), Gaps = 25/267 (9%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+++ IL+ L++ + + ++F + G Y+++I CK G + A ++ E
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE 612
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+ G T + ++ A + A+ FE E ++ + Y+ +I + +
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFE--EAKSKRIELNVVIYSSLIDGFGKV 670
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
D + E L K L PNV T+ L++ K + EA+ F++++
Sbjct: 671 GRIDEAYLILEELM-----QKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKE----L 721
Query: 354 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSS 413
K N+ +G + + LC+ + + + M K Q + P + Y T++S
Sbjct: 722 KCTPNQVTYG----ILINGLCKVRKFNKAFVFWQEMQK--QGMKPSTI----SYTTMISG 771
Query: 414 WIEPLQEEAELGYEIDYIARYISEGGL 440
+ AE G D R+ + GG+
Sbjct: 772 -LAKAGNIAEAGALFD---RFKANGGV 794
>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g07740, mitochondrial-like [Cucumis sativus]
Length = 460
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 139 HETL-IALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVF 196
+ETL +AL + +G L KG+E+ M N + Q++ +L+ LV A+++F
Sbjct: 115 NETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIF 174
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ + G R Y++MI K G A + EM G + +N L
Sbjct: 175 QQAYEMGFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSXLGVLCRK 234
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYN------CVIQAYTRAES--YD----------- 297
G + A F+NM E P+ TY C I Y A+ +D
Sbjct: 235 GEMDTALCLFKNMT--EKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRPV 292
Query: 298 ----------RVQDVAELLGMMVEDHK-RLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ ++ E+ ++ E K RL+P+V TY +LV K V +A + +
Sbjct: 293 NYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKM 352
Query: 347 Q 347
Q
Sbjct: 353 Q 353
>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
Length = 579
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 113/256 (44%), Gaps = 13/256 (5%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M++ G +F+ ++ A N + + L + + +P T + ++G
Sbjct: 223 EMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEG 282
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ E+L + + R + LV+ L ++ + +A+ VF R + + +
Sbjct: 283 QLHRLNEVLDICSR--FMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVS 340
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT--FENMEY 271
M+ C A A+++ + M G + +N + S A + +V+F + F+ M+
Sbjct: 341 MLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFS--ALGKLKQVSFISNLFDKMK- 397
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ + PD TYN +I +Y R D+ ++ E++ + +P+V TY L+ C
Sbjct: 398 -TNGIIPDVFTYNIMISSYGRVGLVDKASELFEVM-----EASSCKPDVVTYNSLINCLG 451
Query: 332 KYCAVTEAIRHFRALQ 347
K+ + EA F+ +Q
Sbjct: 452 KHGDLDEAHMLFKEMQ 467
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM- 269
Y++MI+ + G A E+ MEA+ +N L++C G + A F+ M
Sbjct: 408 YNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ 467
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
E G D PD TY+ +I+ + ++ ++V+ L M+ + PN+ TY +L++C
Sbjct: 468 EKGYD---PDVFTYSILIECFGKS---NKVEMACSLFDEMISEG--CTPNIVTYNILLDC 519
Query: 330 FTKYCAVTEAIRHFRALQ 347
+ EA + + ++
Sbjct: 520 LERRGKTEEAHKLYETMK 537
>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
Length = 573
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 103/225 (45%), Gaps = 14/225 (6%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG-VRPLHETLIALARL 148
D++ D A S S++ ++ +NG+++ A+ + L++ +P TL+++
Sbjct: 163 DLLRDFFARMPSRDSVSWNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSA 222
Query: 149 FGSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVF--LRGAKGGLR 205
G +GL A + + ++ + L+ + +LE A VF +RG +
Sbjct: 223 IAYLGALAQGLWAHAYVIRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKR---- 278
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+ + ++ M+A G AL + ME G M FN +L+ + G+ E
Sbjct: 279 -SLDTWNAMLAGFTANGCSGRALALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRC 337
Query: 266 FENME--YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
F+ M YG ++PD Y C++ + RA +++ +++ +++ M
Sbjct: 338 FQRMSRVYG---IEPDIAHYGCMVDLFCRAGMFEKAEEIIQIMPM 379
>gi|449469755|ref|XP_004152584.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Cucumis sativus]
Length = 708
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 83/213 (38%), Gaps = 44/213 (20%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D M G+ P S+ L+ AY+++G HE A + + L G++P ET L F
Sbjct: 456 DAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKAYSAFENMLREGLKPSIETYTTLLDAF 515
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G ++I W +++ E V G R T
Sbjct: 516 RRAGDTVSLMKI--------------WKLMIREKVL-----------------GTRVT-- 542
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG----IPEVAFAT 265
++ ++ K G + A ++ E + G T +N L++ A G +P++
Sbjct: 543 -FNTLLDGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKLPQLL--- 598
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
E +KPD+ TY+ +I A+ R + R
Sbjct: 599 ---QEMAARDLKPDSVTYSTMIYAFVRVRDFKR 628
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 103/246 (41%), Gaps = 13/246 (5%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M + G+ P SF+ L+ AY+ E L G+ P ++ L +G
Sbjct: 386 VFAEMKSKGVKPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYG 445
Query: 151 -SKGLATKGLEILAAMEKINYDIR---QAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
K ++ + M+K IR ++ L+ + + E A F + GL+
Sbjct: 446 RQKKMSDMAADAFLRMKK--NGIRPTSHSYTALIHAYSVSGWHEKAYSAFENMLREGLKP 503
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
+ E Y ++ +AGD + ++I M + T FN LL A G A
Sbjct: 504 SIETYTTLLDAFRRAGDTVSLMKIWKLMIREKVLGTRVTFNTLLDGFAKHGHYVEARDVI 563
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
E+ + ++P TYN ++ AY R + + + +LL M + L+P+ TY+ +
Sbjct: 564 S--EFDKIGLQPTVMTYNMLMNAYARGGQHLK---LPQLLQEMAA--RDLKPDSVTYSTM 616
Query: 327 VECFTK 332
+ F +
Sbjct: 617 IYAFVR 622
Score = 40.0 bits (92), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 93/205 (45%), Gaps = 21/205 (10%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRN 186
GV+ E L AL + F +GL ++ L + MEK I Y+ +++ ++
Sbjct: 324 GVKWSSEVLGALIKSFCDEGLKSQALILQLEMEKKGVASNVIMYN------TIMDAFSKS 377
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+E+A VF G++ T +++++ + ++ EM+ G +
Sbjct: 378 NQIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSY 437
Query: 247 NHLLSCQA-TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
L+S + ++A F M+ ++ ++P + +Y +I AY+ + +++ E
Sbjct: 438 TCLISAYGRQKKMSDMAADAFLRMK--KNGIRPTSHSYTALIHAYSVSGWHEKAYSAFE- 494
Query: 306 LGMMVEDHKRLQPNVKTYALLVECF 330
M+ E L+P+++TY L++ F
Sbjct: 495 -NMLREG---LKPSIETYTTLLDAF 515
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 128/320 (40%), Gaps = 30/320 (9%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R + A ++ +M GL P + +V AY G GA+ + G P
Sbjct: 276 CREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNV 335
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFL 197
T A+ + F + G K + +L M + D+ L++ + + + ++E A ++
Sbjct: 336 WTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCI-DGHIESAFRLLR 394
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
GL A Y+++I CK G A + +E G + FN +++ G
Sbjct: 395 LMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGG 454
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE-SYDRVQDVAELLGMMVEDHKRL 316
+VA E M PDT TY+ I+ + + S + + + E+L K +
Sbjct: 455 KFDVACTFLEKMVSAG--CAPDTYTYSPFIENLCKTKGSREGLSFIDEML------QKDV 506
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP-----LSLYLR 371
+P+ Y ++++ R F+ +NY T++ + G + +R
Sbjct: 507 KPSTVNYTIVID------------RLFKE-RNYGLATRIWGQMVSLGCSPDVVTYTTSVR 553
Query: 372 ALCREGRIIELLEALEAMAK 391
A C EGR+ E + M K
Sbjct: 554 AYCNEGRLHEAENVVMEMKK 573
>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g31840-like [Vitis vinifera]
Length = 1131
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 120/290 (41%), Gaps = 29/290 (10%)
Query: 111 VVAYTL-------NGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILA 163
VV YT+ G + A+ + L G P H L F K GL+I
Sbjct: 520 VVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFK 579
Query: 164 AMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKA 221
M+ I DI + +L+ R +E+ ++ K GL Y+ MI C
Sbjct: 580 LMQSNGIFPDI-CIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSL 638
Query: 222 GDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPD 279
S A+++ +E+ GR F L+ G + A F +M E G + P+
Sbjct: 639 KIFSKAIKL-FEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPE---PN 694
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
TY+C+I Y + E+ + EL M+ D R+ PN+ +Y++L++ K + EA
Sbjct: 695 ILTYSCLIDGYFKTEN---TESAFELYEKMLGD--RVSPNIVSYSILIDGLCKKGLMEEA 749
Query: 340 IRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
F+ G +L + +G + +R C+ GR+ E + + M
Sbjct: 750 SLAFQCAI----GRHLLPDVIAYG----ILIRGYCKVGRLAEAMMLYDHM 791
Score = 40.0 bits (92), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 7/168 (4%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ IL+ L R LE+ N +F G++ I+ ++ + GD A+E+ M
Sbjct: 313 YSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRML 372
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
G ++ L++ G A F + + ++P TY+ +I + ++E+
Sbjct: 373 KEGISPNVVTYSILINGLCRNGRVLEACGVFGQIL--KQGLEPSVLTYSSLIDGFCKSEN 430
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
++D L G+M+ K P+V ++L+ ++ + EA+R F
Sbjct: 431 ---LRDGFGLYGIMLR--KGHVPDVVVCSMLINGLSRQGMMDEALRFF 473
>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
Length = 579
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 113/256 (44%), Gaps = 13/256 (5%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M++ G +F+ ++ A N + + L + + +P T + ++G
Sbjct: 223 EMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEG 282
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ E+L + + R + LV+ L ++ + +A+ VF R + + +
Sbjct: 283 QLHRLNEVLDICSR--FMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVS 340
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT--FENMEY 271
M+ C A A+++ + M G + +N + S A + +V+F + F+ M+
Sbjct: 341 MLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFS--ALGKLKQVSFISNLFDKMK- 397
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ + PD TYN +I +Y R D+ ++ E++ + +P+V TY L+ C
Sbjct: 398 -TNGIIPDVFTYNIMISSYGRVGLVDKASELFEVM-----EASSCKPDVVTYNSLINCLG 451
Query: 332 KYCAVTEAIRHFRALQ 347
K+ + EA F+ +Q
Sbjct: 452 KHGDLDEAHMLFKEMQ 467
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM- 269
Y++MI+ + G A E+ MEA+ +N L++C G + A F+ M
Sbjct: 408 YNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ 467
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
E G D PD TY+ +I+ + ++ ++V+ L M+ + PN+ TY +L++C
Sbjct: 468 EKGYD---PDVFTYSILIECFGKS---NKVEMACSLFDEMISEG--CTPNIVTYNILLDC 519
Query: 330 FTKYCAVTEAIRHFRALQ 347
+ EA + + ++
Sbjct: 520 LERRGKTEEAHKLYETMK 537
>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 18/243 (7%)
Query: 98 AGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK 157
+ P F+ L+ AY ++ A + L + P +T L + + GL +
Sbjct: 171 SSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIER 230
Query: 158 GLEILAAMEK-------INYDIRQAWLILVEELVRNK-YLEDANKVFLRGAKGGLRATDE 209
+L M+ I + A+ +E L++ K E+A VF R + + T E
Sbjct: 231 AEVVLVEMQNHHVSPKTIGVTVYNAY---IEGLMKRKGNTEEAIDVFQRMKRDRCKPTTE 287
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y+LMI KA + ++ EM + + L++ A G+ E A FE +
Sbjct: 288 TYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQL 347
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ ED ++PD YN ++++Y+RA AE+ +M H +P+ +Y ++V+
Sbjct: 348 Q--EDGLEPDVYVYNALMESYSRA---GYPYGAAEIFSLM--QHMGCEPDRASYNIMVDA 400
Query: 330 FTK 332
+ +
Sbjct: 401 YGR 403
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEME----AAGRMATTFHFNHLLSCQATCGIPEVA 262
T++ Y L+I C AG A + EM+ + + T + ++ G E A
Sbjct: 211 TEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEA 270
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRA-ESYDRVQDVAELLGMMVEDHKRLQPNVK 321
F+ M+ D KP TETYN +I Y +A +SY + E+ H+ +PN+
Sbjct: 271 IDVFQRMK--RDRCKPTTETYNLMINLYGKASKSYMSWKLYCEM-----RSHQ-CKPNIC 322
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQ 347
TY LV F + +A F LQ
Sbjct: 323 TYTALVNAFAREGLCEKAEEIFEQLQ 348
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 12/204 (5%)
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYL 189
S +P T AL F +GL K EI +++ + D+ + L+E R Y
Sbjct: 314 SHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDV-YVYNALMESYSRAGYP 372
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
A ++F G Y++M+ +AG HS+A + EM+ G +A T +H+
Sbjct: 373 YGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLG-IAPTMK-SHM 430
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGM 308
L A +V E E+ ++PDT N ++ Y R + +++ + AE+
Sbjct: 431 LLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEM--- 487
Query: 309 MVEDHKRLQPNVKTYALLVECFTK 332
++ ++ TY +L+ + K
Sbjct: 488 ---ENGPCTADISTYNILINIYGK 508
>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
Length = 484
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/310 (20%), Positives = 120/310 (38%), Gaps = 56/310 (18%)
Query: 22 GVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSL---LSTNGSVVSAAEQGLRLIFMEELMQ 78
GVVP +A +S + K R+ Q+ D + S + S +G
Sbjct: 165 GVVPNLAAFNSLLGALCKSKNVRKAQEIFDKMNSRFSPDAKTYSILLEGW---------- 214
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
R + P++ +V +M+ AG P ++ +V + G E A+ ++ S G +P
Sbjct: 215 -GRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGRVEEAVRVVQDMTSRGCQPT 273
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
L +G ++R +EDA FL
Sbjct: 274 TYIYSVLVHTYG-------------------VEMR---------------IEDAVATFLD 299
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
K G+ +Y+ +++ CKA NA + +ME G + +N +L+ + G
Sbjct: 300 MEKDGIVPDIVVYNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGR 359
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ A+ F M +PD +TY +I+ + + + V + + + K+ P
Sbjct: 360 DDEAYKVFRRM---IKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRL-----KQFLP 411
Query: 319 NVKTYALLVE 328
++ T+++L+
Sbjct: 412 SMHTFSVLIN 421
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 87/203 (42%), Gaps = 31/203 (15%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + IL+E R L +V+ G Y +M+ CK G A+ + +
Sbjct: 205 KTYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVDSLCKTGRVEEAVRVVQD 264
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M + G TT+ ++ L+ E A ATF +ME +D + PD YN ++ A+ +A
Sbjct: 265 MTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDME--KDGIVPDIVVYNALVSAFCKA 322
Query: 294 ESYD---RVQDVAELLGM--------MVEDH------------------KRLQPNVKTYA 324
+ ++ RV + E G+ ++ +H K QP+ TY
Sbjct: 323 KKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIKCCQPDCDTYT 382
Query: 325 LLVECFTKYCAVTEAIRHFRALQ 347
++++ F + V A++ ++ ++
Sbjct: 383 MMIKMFCENDKVEMALKVWKYMR 405
>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
Length = 583
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 8/164 (4%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEA 236
ILV+ L R + ++V R + G+ + + + +I+ CKAG +A+ + +M A
Sbjct: 291 ILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVA 350
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
+G M T +N L++ G A ++ M PD T++ +I Y R
Sbjct: 351 SGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMT--RLRCPPDVVTFSSLIDGYCRCGQL 408
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
D D + M + R+QPNV T+++++ K EAI
Sbjct: 409 D---DALRIWSDMAQ--HRIQPNVYTFSIIIHSLCKQNRSDEAI 447
>gi|11994769|dbj|BAB03125.1| unnamed protein product [Arabidopsis thaliana]
Length = 498
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 108/239 (45%), Gaps = 20/239 (8%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV +M+ +S + + ++ A T + A+ + L G++P L+A L
Sbjct: 228 DVYDEMVNNKISLREDAMYAMISACTKEEKWDLALKIFQSMLKKGMKP---NLVACNTLI 284
Query: 150 GSKGLATK-GL--EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
S G A K GL ++ + ++ + + + W L+ L + ED ++F L
Sbjct: 285 NSLGKAGKVGLVFKVYSVLKSLGHKPDEYTWNALLTALYKANRYEDVLQLFDMIRSENLC 344
Query: 206 ATDE-IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+E +Y+ + K G A+++ YEME +G +T +N ++S +VA
Sbjct: 345 CLNEYLYNTAMVSCQKLGYWEKAVKLLYEMEGSGLTVSTSSYNLVISACEKSRKSKVALL 404
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+E+M + KP+T TY ++++ +D V+D+ K+++P+V Y
Sbjct: 405 VYEHM--AQRDCKPNTFTYLSLVRSCIWGSLWDEVEDIL----------KKVEPDVSLY 451
>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Brachypodium distachyon]
Length = 862
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 125/319 (39%), Gaps = 17/319 (5%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
AR D RV ++ +M G +P P ++ GL+ A+T G A+ L++ + G P
Sbjct: 291 ARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTA 350
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
T L L+G +G E+ M + +L + ++ ++F
Sbjct: 351 ATYRVLLDLYGRQGRFDGVRELFREMRTAVPPDTATYNVLFSVFGDGGFFKEVVELFHDM 410
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
+ G+ E + ++ + G H +A E+ + G + T + L+ +
Sbjct: 411 LRTGIEPDMETCEGVLVACGQGGLHEDAREVLDYITKEGMVPTAKAYTGLVEALGHAAMY 470
Query: 260 EVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E A+ F M E G P ETYN + + + + AE + + + +Q
Sbjct: 471 EEAYVAFNMMTEIGS---LPTIETYNSLANVFAKGGLFQE----AESIFSRMTNSAGIQK 523
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
N ++ L+E + + + +A++ + ++ EG L A C G
Sbjct: 524 NKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEG--------VLNAYCIAGV 575
Query: 379 IIELLEALEAMAKDNQPVP 397
I E E E + + N VP
Sbjct: 576 IDESKEQFEEI-QSNMAVP 593
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 87/235 (37%), Gaps = 20/235 (8%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET----LIALARLFGSKGLATKGLEI 161
S+ L+ AY N HE A L + +AGV P T L A AR L +
Sbjct: 170 SYTSLIAAYARNALHEEARALLDQMKAAGVAPTAATYNTVLAACARATDPPVPFDMLLGL 229
Query: 162 LAAMEK-----INYDIRQAWLILVEELVRNKYLEDANKVFLRGA-KGGLRATDEIYDLMI 215
A M + D+ +L VR+ L D ++ LR + G+ Y ++
Sbjct: 230 FAEMRHDVSPAVRPDLTTYNTLLAAAAVRS--LNDQAEMLLRAMLEAGVLPDTASYRHIV 287
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
+AGD S E+ EM G + L+ G A A M+ D
Sbjct: 288 DAFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQ--ADG 345
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
P TY ++ Y R +D V++ + E + P+ TY +L F
Sbjct: 346 CAPTAATYRVLLDLYGRQGRFDGVRE------LFREMRTAVPPDTATYNVLFSVF 394
>gi|356573733|ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Glycine max]
Length = 752
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 101/233 (43%), Gaps = 16/233 (6%)
Query: 121 EGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLIL 179
E + K+ L+AG + ET +L LF +KGL K E+ +MEK + + ++
Sbjct: 176 EVSFCCFKKILNAGCKVDTETYNSLITLFLNKGLPYKAFEMYESMEKAGCSLDGSTYELM 235
Query: 180 VEELVRNKYLEDANKVF----LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ L ++ L+ A K+F +RG + GL + D M KAG +A+++ EM
Sbjct: 236 IPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSM----GKAGRLDSAMKVYMEMR 291
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
G + L+ G E A ++ M +P+ Y +I+++ ++
Sbjct: 292 GYGYKPPPTIYVSLIESYVKSGKLETALRLWDEMRMAG--FRPNFGLYTLIIESHAKSGK 349
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
+ ++ L M + P TYA L+E + A++ + ++ N
Sbjct: 350 LEIA--MSTFLDM---EKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSMTN 397
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 74/191 (38%), Gaps = 3/191 (1%)
Query: 98 AGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK 157
AG S ++ ++ +G + A + G RP +L G G
Sbjct: 223 AGCSLDGSTYELMIPNLAKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAGRLDS 282
Query: 158 GLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+++ M Y ++ L+E V++ LE A +++ G R +Y L+I
Sbjct: 283 AMKVYMEMRGYGYKPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLIIE 342
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
K+G A+ +ME AG + T + LL A G + A + +M +
Sbjct: 343 SHAKSGKLEIAMSTFLDMEKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSMTNAG--L 400
Query: 277 KPDTETYNCVI 287
+P TY ++
Sbjct: 401 RPGLSTYTVLL 411
Score = 40.0 bits (92), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 67 GLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHS 126
GL + +E HA++ DM AG P P ++ L+ + +G + AM
Sbjct: 335 GLYTLIIE---SHAKSGKLEIAMSTFLDMEKAGFLPTPSTYACLLEMHAASGQIDPAMKL 391
Query: 127 LKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI 172
+AG+RP T L L +K L +IL M+ + Y +
Sbjct: 392 YNSMTNAGLRPGLSTYTVLLTLLANKKLVDVAAKILLEMKAMGYSV 437
>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 399
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 14/206 (6%)
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI----NYDIRQAWLILVEELVRN 186
L A P +T L R + + G + +++ M + + + A+L + L++
Sbjct: 6 LEARCVPTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYL---DGLLKA 62
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+ E A +V+ R + R E Y LMI K+ +A+++ EM++ G A +
Sbjct: 63 RCAEKAVEVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTY 122
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
L++ A G+ E A FE M+ +PD YN +++AY+RA Q +E+
Sbjct: 123 TALVNAFAREGLCEKAEEVFEEMQQAGH--EPDVYAYNALMEAYSRA---GFPQAASEIF 177
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTK 332
+M H +P+ +Y +LV+ + +
Sbjct: 178 SLM--QHMGCEPDRASYNILVDAYGR 201
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 90/218 (41%), Gaps = 19/218 (8%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + +++ ++K A KVF G +A Y ++ + G A E+ E
Sbjct: 85 ETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEE 144
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+ AG + +N L+ + G P+ A F M++ +PD +YN ++ AY RA
Sbjct: 145 MQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMG--CEPDRASYNILVDAYGRA 202
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
+ + V E L + + P +K++ LL+ + V E
Sbjct: 203 GLHREAEAVFESL-----KRQGMAPTMKSHMLLLAAHARSGNVARC----------EEVM 247
Query: 354 KVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAM 389
LH G D ++L L A R GR+ ++ L AM
Sbjct: 248 AQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAM 285
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 12/215 (5%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M + G ++ LV A+ G E A + AG P AL +
Sbjct: 106 VFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYS 165
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G EI + M+ + + R ++ ILV+ R +A VF + G+ T +
Sbjct: 166 RAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMK 225
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ L++A ++G+ + E+ ++ +G T N +L+ G ++M
Sbjct: 226 SHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAG-------RLDDM 278
Query: 270 EYGEDYMKP----DTETYNCVIQAYTRAESYDRVQ 300
E M+ D TYN + AY RA +R++
Sbjct: 279 ERLLAAMERRGTRDVGTYNVAVNAYGRAGYLERME 313
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 96/251 (38%), Gaps = 43/251 (17%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+++ D + G P ++ L+ GD E A+ + G++P +L +
Sbjct: 312 ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGL 371
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+GL L+++ M A+ G +
Sbjct: 372 CLQGLILHALQVMNEM----------------------------------AEEGCHPDIQ 397
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y+++I CK G+ S+A + + G + F FN L+ + A E M
Sbjct: 398 TYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM 457
Query: 270 -EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
EYG + PDT TYN V+ +A +V +V E M+ K PN TY +L+E
Sbjct: 458 WEYG---IAPDTITYNSVLNGLCKA---GKVNEVNETFQEMIL--KGCHPNPITYNILIE 509
Query: 329 CFTKYCAVTEA 339
F + + EA
Sbjct: 510 NFCRSNKMEEA 520
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 104/265 (39%), Gaps = 36/265 (13%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ D I G P +F+ L+ Y + A+ ++R G+ P T ++
Sbjct: 418 VMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLC 477
Query: 151 SKGLATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
G + E M I Y+I L+E R+ +E+A+KV ++ ++ G
Sbjct: 478 KAGKVNEVNETFQEMILKGCHPNPITYNI------LIENFCRSNKMEEASKVIVKMSQEG 531
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
L ++ +I C+ GD A + ++E G AT FN L+ AF
Sbjct: 532 LHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIG----------AF 581
Query: 264 ATFENMEYGEDYM--------KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
+ NM E + D+ TY +I + + DR L+ M+ K
Sbjct: 582 SGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRA--YMHLVEMI---KKG 636
Query: 316 LQPNVKTYALLVECFTKYCAVTEAI 340
P++ T+ ++ T V +A+
Sbjct: 637 FIPSMSTFGRVINSLTVNHRVFQAV 661
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 18/231 (7%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
+++ + +++A ++ G Y +I C GD ALE+ E +A G
Sbjct: 297 IIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKG 356
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+N L+ G+ A M E+ PD +TYN VI +
Sbjct: 357 IKPDIVVYNSLVKGLCLQGLILHALQVMNEM--AEEGCHPDIQTYNIVINGLCKM---GN 411
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE-GGTKVLH 357
+ D ++ + K P+V T+ L++ + K + A++ + Y + +
Sbjct: 412 ISDATVVMNDAIM--KGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITY 469
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMA-KDNQPVPPRAMILSRKY 407
N L LC+ G++ E+ E + M K P P IL +
Sbjct: 470 NS---------VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENF 511
>gi|168012346|ref|XP_001758863.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690000|gb|EDQ76369.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 367
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 7/164 (4%)
Query: 184 VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATT 243
V+ L++A +V+ R GL+ T Y ++ C+A H A+E+ EM G
Sbjct: 162 VQGGRLKEAAEVYQRILDAGLKPTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDL 221
Query: 244 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303
++ ++S G E A F ++ D P+ T+ C+IQA+ ++Q++
Sbjct: 222 MIYSLMISVYGKAGSAEEAALVFRQLQ--NDGYIPNVVTWCCLIQAFGWQ---GKMQEIG 276
Query: 304 ELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
M+ P++ Y +++ + +Y +A FR +Q
Sbjct: 277 AFFNEMLASG--CLPDLTLYNVMMGAYGRYGHSVQAAILFRRMQ 318
Score = 46.2 bits (108), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 101/257 (39%), Gaps = 44/257 (17%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+++G+ G SF+ ++ AY G + A + + +G++ TL L G
Sbjct: 35 EMLSSGVEVGLHSFNSMIGAYARKGLFKKAWRMYEDMVESGIQADEITLSTLLSGVGKTQ 94
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
L +E A K+F + + G+ E Y+
Sbjct: 95 LP---------------------------------VETAEKIFSKIKENGILPRVETYNT 121
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
+++ + G E+ EM+ + FN LL G + A ++ + +
Sbjct: 122 LLSVLSRGGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRIL--D 179
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL--QPNVKTYALLVECFT 331
+KP TY ++Q Y RA + +V + +R+ +P++ Y+L++ +
Sbjct: 180 AGLKPTVVTYTGLVQMYCRASKHKEAIEV-------FLEMRRVGCKPDLMIYSLMISVYG 232
Query: 332 KYCAVTEAIRHFRALQN 348
K + EA FR LQN
Sbjct: 233 KAGSAEEAALVFRQLQN 249
>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Cucumis sativus]
Length = 707
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 125/307 (40%), Gaps = 32/307 (10%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H R +++ DM+ A + P +F+ L+ A G+ A+ K+ GV P
Sbjct: 75 HGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPD 134
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVF- 196
T + + S +K L M+ N L I++ L++ K A ++F
Sbjct: 135 LVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFS 194
Query: 197 -LRGAKGGLRATDEIYDLMI--------AEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+R + R + +I EDCKA + M A G +N
Sbjct: 195 SMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKA--------VFSTMLAEGIKPNIVSYN 246
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
L+S A+ G+ + AF+ F+ M+ PD +Y +I + R++ R ++V +++
Sbjct: 247 ALISAYASHGMDKEAFSVFDEMK--RSGFCPDVVSYTSLISTFGRSQQPARAREVFDMM- 303
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ------NYEGGTKVLHNEGN 361
+ +PN+ +Y L++ + + +A+ R ++ N +L G
Sbjct: 304 ----KRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGR 359
Query: 362 FGDPLSL 368
FG +++
Sbjct: 360 FGQKVNI 366
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 8/180 (4%)
Query: 169 NYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
NY R + +++ R+ ++ A +F K + E Y+ +I +AG A
Sbjct: 25 NYCARNDIYNMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALINAHGRAGQWRWA 84
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
I +M A + FN+L++ +CG A + M ++ + PD T+N V+
Sbjct: 85 TNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMT--DNGVGPDLVTHNIVL 142
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
AY Y + EL+ ++P+ T +++ C K +AI F +++
Sbjct: 143 SAYKSGAQYSKALSYFELM-----KGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMR 197
>gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Glycine max]
Length = 553
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 14/249 (5%)
Query: 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEIL 162
G F L+ AY GD GA L G P + AL +G G I
Sbjct: 134 GKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYVPNVVSQTALMEAYGKGGRYNNAEAIF 193
Query: 163 AAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAED 218
M+K + + I+++ V+ +A ++F L L+ +++++MI
Sbjct: 194 RRMQKWGPEPSAFTYQIILKTFVQGNKYREAEELFDNLLNDENSPLKPDQKMFNMMIYMY 253
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
KAG + A + M G TT +N L+S + EV+ ++ M+ + ++P
Sbjct: 254 KKAGSYEKARKTFALMAERGIQQTTVTYNSLMSFE--TDYKEVS-NIYDQMQRAD--LRP 308
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
D +Y ++ AY +A R ++ + M++ R P K Y +L++ F+ V +
Sbjct: 309 DVVSYALLVSAYGKAR---REEEALAVFEEMLDAGVR--PTRKAYNILLDAFSISGMVEQ 363
Query: 339 AIRHFRALQ 347
A F++++
Sbjct: 364 AQTVFKSMR 372
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
++ + ++ + + LR Y L+++ KA AL + EM AG T +N L
Sbjct: 292 KEVSNIYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYNIL 351
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
L + G+ E A F++M D PD +Y ++ AY A D ++ + +
Sbjct: 352 LDAFSISGMVEQAQTVFKSMR--RDRYFPDLCSYTTMLSAYVNA---DDMEGAEKFFKRL 406
Query: 310 VEDHKRLQPNVKTYALLVECFTK 332
++D +PNV TY L++ + K
Sbjct: 407 IQDD--FEPNVVTYGTLIKGYAK 427
Score = 40.4 bits (93), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 8/232 (3%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
D V+++ M A L P S+ LV AY E A+ + L AGVRP +
Sbjct: 290 DYKEVSNIYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYN 349
Query: 144 ALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
L F G+ + + +M + Y D+ ++ ++ V +E A K F R +
Sbjct: 350 ILLDAFSISGMVEQAQTVFKSMRRDRYFPDL-CSYTTMLSAYVNADDMEGAEKFFKRLIQ 408
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
Y +I K D ++ EM G A ++ G +
Sbjct: 409 DDFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLVRGIKANQTILTTIMDAYGKSGDFDS 468
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
A F+ ME + + PD + N ++ + ++ + ++ EL+G E++
Sbjct: 469 AVHWFKEME--SNGIPPDQKAKNVLL---SLPKTDEEREEANELVGHFSENN 515
>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
Length = 661
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 116/281 (41%), Gaps = 17/281 (6%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M G++P ++ LV AYT G E A LK + GV+P + F
Sbjct: 314 VLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFR 373
Query: 151 SKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G K +L M + D R + ++++ + L A F R + G+
Sbjct: 374 DRGEWQKAFAVLREMHASGVRPD-RHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDV 432
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
++ +I CK G H A+E+ EM + T +N +++ E + E
Sbjct: 433 VTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGE----EQRWEGVEA 488
Query: 269 M--EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
M E E + P+ TY ++ Y R+ + D E M D L+P+ Y L
Sbjct: 489 MLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIE---AMKADG--LKPSPTMYHAL 543
Query: 327 VECFTKYCAVTEAIRHFRALQ--NYEGGTKVLHNEGN-FGD 364
V + + A+ +A++ E T VL++ N FG+
Sbjct: 544 VNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGE 584
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 19/255 (7%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG- 158
L P F L+ A+ + A+ L + G+ P + AL GS +
Sbjct: 217 LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 276
Query: 159 ---LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
LE A E I R A+ L++ V+ L++A +V ++ G+ + Y L++
Sbjct: 277 ALFLEFFLAGE-IKPRTR-AYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 334
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
+AG +A + EMEA G +++ F+ +L+ G + AFA M
Sbjct: 335 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMH--ASG 392
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
++PD YN +I + + Y+ + + M E+ ++P+V T+ L++ K
Sbjct: 393 VRPDRHFYNVMIDTFGK---YNCLGHAMDAFDRMREEG--IEPDVVTWNTLIDAHCK--- 444
Query: 336 VTEAIRHFRALQNYE 350
RH RA++ ++
Sbjct: 445 ---GGRHDRAIELFD 456
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GL+ + +Y ++ + G +AL + M A G A+T N L++ A
Sbjct: 532 GLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEA 591
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
F+ + M+ E+ ++PD TY +++A R E +++V + E
Sbjct: 592 FSVLQFMK--ENGLRPDVITYTTLMKALIRVEQFEKVPVIYE 631
>gi|356525788|ref|XP_003531505.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Glycine max]
Length = 572
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+ Y +IA C+ G+ A ++ YEM G ++ ++ L+ G+ + A F
Sbjct: 414 DFYKNLIASLCRKGNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFRI 473
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+E E+ +PD + YN +I + +A+ R E+ MMV +K PN TY +LVE
Sbjct: 474 LE--ENDHRPDIDNYNALILGFCKAQ---RTDLSIEIFLMMV--NKGCVPNENTYTILVE 526
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 93/440 (21%), Positives = 170/440 (38%), Gaps = 76/440 (17%)
Query: 4 FLRTPFPFI---------SPVLSKSQTGVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLL 54
FL + FP + S V + +Q + P + + P + R Q+ ++ + D+ L
Sbjct: 26 FLHSQFPNLRTFSLNKGFSRVSASTQIAISPKDTIFNLPNWRVGRNDQKGKELRIYDAFL 85
Query: 55 STNGSVVSA----AEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSF--- 107
V Q +L++ +L + + R A RV ++ M+ +G+ P S+
Sbjct: 86 HLEYLVGKGQKPEVNQATQLLY--DLCKFNKARKAVRVMEM---MVGSGIIPDAASYTHL 140
Query: 108 ----------------------HG----------LVVAYTLNGDHEGAMHSLKRELSAGV 135
HG LV ++G+ ++ L R G+
Sbjct: 141 VNFLCKRGNVGYAIQLVEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGL 200
Query: 136 RPLHETL-IALARLFGSKGL--ATKGLE-ILAAMEKINYDIRQAWLILVEELVRNKYLED 191
P T L + +G+ A K L+ I+A + N ++ +L+ L + E+
Sbjct: 201 IPNAFTYSFLLEAAYKERGVDEAMKLLDDIIAKGGEPNL---VSYNVLLTGLCKEGRTEE 257
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A K+F G + +++++ C G A E+ EM+ + + +N L++
Sbjct: 258 AIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEANELLAEMDKEDQPPSVVTYNILIT 317
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
+ G E AF + M K +YN +I R +V V + L M+
Sbjct: 318 SLSLNGRTEQAFKVLDEMT--RSGFKASATSYNPII---ARLCKEGKVDLVLKCLDQMI- 371
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLR 371
H+R PN TY+ + ++ V EA ++L G+K +F L +
Sbjct: 372 -HRRCHPNEGTYS-AISMLSEQGKVQEAFFIIQSL-----GSKQNFPMHDFYKNL---IA 421
Query: 372 ALCREGRIIELLEALEAMAK 391
+LCR+G + L M K
Sbjct: 422 SLCRKGNTYPAFQMLYEMTK 441
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 86/218 (39%), Gaps = 39/218 (17%)
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+AT +YDL CK A+ + M +G + + HL++ G A
Sbjct: 101 QATQLLYDL-----CKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGYAIQ 155
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
E ME G + +T TYN +++ + + +LL + + K L PN TY+
Sbjct: 156 LVEKME-GHGF-PTNTVTYNTLVKGLCM---HGNLNQSLQLLDRLTK--KGLIPNAFTYS 208
Query: 325 LLVECFTKYCAVTEAIRHFR---------ALQNYEGGTKVLHNEGNFGDPLSLY------ 369
L+E K V EA++ L +Y L EG + + L+
Sbjct: 209 FLLEAAYKERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVK 268
Query: 370 ------------LRALCREGRIIELLEALEAMAKDNQP 395
LR+LC EGR E E L M K++QP
Sbjct: 269 GFSPSVVSFNILLRSLCYEGRWEEANELLAEMDKEDQP 306
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 106/264 (40%), Gaps = 27/264 (10%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
D+IA G P S++ L+ G E A+ + G P + L R +G
Sbjct: 229 DIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEG 288
Query: 154 LATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+ E+LA M+K + Y+ IL+ L N E A KV + G +A
Sbjct: 289 RWEEANELLAEMDKEDQPPSVVTYN------ILITSLSLNGRTEQAFKVLDEMTRSGFKA 342
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEM--EAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ Y+ +IA CK G L+ +M T+ +LS Q G + AF
Sbjct: 343 SATSYNPIIARLCKEGKVDLVLKCLDQMIHRRCHPNEGTYSAISMLSEQ---GKVQEAFF 399
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTR-AESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+++ +++ P + Y +I + R +Y Q + E+ P+ TY
Sbjct: 400 IIQSLGSKQNF--PMHDFYKNLIASLCRKGNTYPAFQMLYEM------TKYGFTPDSYTY 451
Query: 324 ALLVECFTKYCAVTEAIRHFRALQ 347
+ L+ + + EA++ FR L+
Sbjct: 452 SSLIRGMCREGMLDEALKIFRILE 475
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 105/254 (41%), Gaps = 8/254 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M G P +F+ L+ L+ A+ + R ++ G +P T + +G
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGD 236
Query: 155 ATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+L ME+ + + +++ L +NK+++DA +F G+R Y
Sbjct: 237 TDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSS 296
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
+I+ C G S+A + +M F F+ L+ G A ++ M +
Sbjct: 297 LISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV--K 354
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
+ P TY+ +I + +DR+ + ++ MV H P+V +Y+ L++ F K
Sbjct: 355 RSIDPSIVTYSSLINGFCM---HDRLDEAKQMFEFMVSKH--CFPDVVSYSTLIKGFCKA 409
Query: 334 CAVTEAIRHFRALQ 347
V E + FR +
Sbjct: 410 KRVDEGMELFREMS 423
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ L +N LE A VF + + T Y++MI CKAG + ++ + G
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+N ++S G E A A F+ M+ ED P++ YN +I+A R
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMK--EDGTLPNSGCYNTLIRARLR 583
>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
Length = 1435
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 114/278 (41%), Gaps = 19/278 (6%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L H R RD V +I +M AG P + L+ YT G+ + + L AG+
Sbjct: 895 LCHHNRFRD---VELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGL 951
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANK 194
P +T L ++ +G +L M K + Q++ L+ + + E A++
Sbjct: 952 EPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQ 1011
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+F + IY +M+ AG+HS A + M+ G T + L++
Sbjct: 1012 IFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYG 1071
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
T G P A N++ ++ T Y+ V AY + Y+ +LL M
Sbjct: 1072 TAGQPREAENVLNNLKSSS--LEVSTLPYSTVFDAYLKNGDYN--HGTTKLLEM---KRD 1124
Query: 315 RLQPNVKTYALLVECFTKYCAVTE----AIRHFRALQN 348
++P+ + + CF + ++ E AI ++LQ+
Sbjct: 1125 GVEPDHQVWT----CFIRAASLCEQTADAILLLKSLQD 1158
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A +VFLR A G AT ++++ M+ ++G +A ++ M G FN L++
Sbjct: 207 AEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLIN 264
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
++ G A E + ++PD TYN +I A +++ + ++D + M+
Sbjct: 265 ARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSN---LEDAVTVFEDMIA 321
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
R P++ TY +V + EA R FR L
Sbjct: 322 SECR--PDLWTYNAMVSVHGRCGKAEEAERLFREL 354
Score = 43.1 bits (100), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 43/229 (18%), Positives = 93/229 (40%), Gaps = 7/229 (3%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H R A + +++ G P +++ L+ A+ G+ + H+ ++ + AG +
Sbjct: 338 HGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKN 397
Query: 139 HETLIALARLFGSKG---LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195
T + ++G G LA + + AM + + ++++ L + + +A KV
Sbjct: 398 EITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAV--TYTVMIDSLGKMNRIAEAGKV 455
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
GL+ T + +I K G ++A M A+G + +L A
Sbjct: 456 LEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFAR 515
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
G E + M D +PD + Y ++ A + + + +++V +
Sbjct: 516 SGDTEKMLCLYRKMM--NDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQ 562
>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 669
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 142/359 (39%), Gaps = 59/359 (16%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG---DHEGAMHSL 127
I +++L H R DA RV D + + +A S + LV Y +G D E + +
Sbjct: 115 ILIKKLCAHRRLADAERVLDALKESGSADAV----SHNTLVAGYCRDGRLADAERVLEAA 170
Query: 128 KRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM----EKINYDIRQAWLILVEEL 183
K +A V T AL + G L ++A+M + Y+ +++ L
Sbjct: 171 KVSGAANV----VTYTALINGYCRSGRLADALNLIASMPVAPDTYTYNT------VLKGL 220
Query: 184 VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATT 243
K E A ++ + + + I C+ G +A+++ M G
Sbjct: 221 CGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHAVQLLERMPRYGCTPDV 280
Query: 244 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303
++ L++ + G + A M KP+T YN ++ AE R +DV
Sbjct: 281 VIYSTLVNGFSEQGRVDDALVLLNTM-----LCKPNTVCYNAALKGLCMAE---RWKDVG 332
Query: 304 ELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK---VLHN-- 358
EL+ MV K PN T+++L C ++ V A+ +Q Y G + V++N
Sbjct: 333 ELIAEMV--RKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKY--GCRPDVVIYNTL 388
Query: 359 ------EGNFGDPLSLY---------------LRALCREGRIIELLEALEAMAKDNQPV 396
+G D L L L+ALCR R ++ E + M +++ P+
Sbjct: 389 INYFSEQGRVDDALMLLDSMLCNPDTISFNAALKALCRTERWYDVEELIAQMLREDCPL 447
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 118/279 (42%), Gaps = 34/279 (12%)
Query: 51 DSLLSTNGSV-VSAAEQGL----RLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPR 105
DS+L ++ +AA + L R +EEL+ D P + ++ ++++ L
Sbjct: 406 DSMLCNPDTISFNAALKALCRTERWYDVEELIAQMLREDCPLI-EMTFNILIDSLCQ--- 461
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
HGLV +H A+ ++ P T +L F +GL +E+ +M
Sbjct: 462 --HGLV-------NH--AIEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSM 510
Query: 166 EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
DI ++ +++ L R EDA ++ A+ + ++++I C+ G
Sbjct: 511 -PCKPDIF-SYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFAD 568
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
A+E+ +M G F +N L++ + G + A M KPD +YN
Sbjct: 569 RAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTMS-----CKPDAISYNS 623
Query: 286 VIQAYTRAESYDRVQD-VAELLGMMVEDHKRLQPNVKTY 323
++ RAE + ++ VAE+L K+ PN T+
Sbjct: 624 TLKGLCRAERWKEAEEIVAEML------RKKCPPNEVTF 656
>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 118/290 (40%), Gaps = 66/290 (22%)
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFL 197
ET+ + R G + + +EK I+ D A +L++ LV+ +EDA+ VF
Sbjct: 243 ETMSKVIRRLARAGRHQEAIHAFRNIEKYGISTDT-TAMNVLMDALVKEASVEDAHNVF- 300
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
R K + ++++I CKA A +I E+E +G
Sbjct: 301 RELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIMGEVEKSG------------------- 341
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
++PD +Y I+A+ R + + V V L+ M +HK +
Sbjct: 342 ------------------LEPDVISYTAFIEAHCREKDFRNVDKV--LVQM---EHKGCK 378
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY---LRALC 374
PNV T+ +++ K + EA++ + ++ EG D S Y + L
Sbjct: 379 PNVITFTIIMHALGKAKQINEALKVYEKMK----------KEGCVPDS-SFYSSLIFILG 427
Query: 375 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAEL 424
+ GR+ ++ E +E M K Q V P + Y TL+S QEE L
Sbjct: 428 KAGRLTDVKEIVEDMEK--QGVTPDVLT----YNTLISCACAHSQEETAL 471
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ I++ L + K + +A KV+ + K G Y +I KAG ++ EI +M
Sbjct: 383 TFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDM 442
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
E G +N L+SC E A ME E KPD +TY+ +++ + R +
Sbjct: 443 EKQGVTPDVLTYNTLISCACAHSQEETALTLLLKME--EVSCKPDLKTYHPLLKMFCRKK 500
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
R++ + LL M ++ ++ TYA+LV
Sbjct: 501 ---RMKVLKFLLDHMFKNDVSIEAG--TYAILV 528
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 11/217 (5%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
+ + M+ G++P S++ ++ + + AM+ L+ L + P T +L F
Sbjct: 277 MFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFC 336
Query: 151 SKGLATKGLEILAAMEKINYDIRQ-----AWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
G T L++L M Y Q + L++ L +N+ L+ A +F++ + G++
Sbjct: 337 KLGRITSALDLLKEM----YHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQ 392
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y +I CK G H NA ++ + G + +N ++S G+ + A A
Sbjct: 393 PNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAM 452
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
ME E+ PD T+ +I++ + D+ + +
Sbjct: 453 KSKME--ENGCIPDAVTFEIIIRSLFEKDQNDKAEKL 487
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 64/309 (20%), Positives = 124/309 (40%), Gaps = 22/309 (7%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ ++ G P + + L+ L G+ + ++H + ++ G + + L
Sbjct: 67 VLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLC 126
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLI---LVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G L++L +E + R ++ +++ L ++K + +A ++ G+
Sbjct: 127 KIGETRSALKLLRMIE--DRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPN 184
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y +I C AG A + EM + + L+ A C +V A
Sbjct: 185 VITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMD--ALCKEGKVKEAKNL 242
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
++ +KP+ +YN ++ Y VQ+ ++ MV+ K + PNV +Y +++
Sbjct: 243 LAVMTKEGVKPNVVSYNTLMDGYCLI---GEVQNAKQMFHTMVQ--KGVNPNVYSYNIMI 297
Query: 328 ECFTKYCAVTEAIRHFRALQNYEGGTKVLH-NEGNFGDPLSLYLRALCREGRIIELLEAL 386
+ K V EA+ R +VLH N S + C+ GRI L+ L
Sbjct: 298 DRLCKSKRVDEAMNLLR---------EVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLL 348
Query: 387 EAMAKDNQP 395
+ M QP
Sbjct: 349 KEMYHRGQP 357
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 144/385 (37%), Gaps = 84/385 (21%)
Query: 89 NDVIYDMIAAGLS---------------PGPR--SFHGLVVAYTLNGD-HEGAMHSLKRE 130
ND+ Y + GL PGP F+ LV + NG +E +
Sbjct: 314 NDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKM 373
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAME----KINYDIRQAWLILVEELVRN 186
++ G P T L KGL LE++ M+ K N + + IL++ +
Sbjct: 374 INNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLN---TYTILIDGFCKK 430
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
LE+A + G Y+ +I+ CK G AL++ EM + G F F
Sbjct: 431 GQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTF 490
Query: 247 NHLLSCQATCGIPEV--AFATFENMEYGEDYMKPDTETYNCVIQAYTR----AESYDRVQ 300
N L+ C + E+ A A + +M + + ++ T+N +I A+ R E+ V
Sbjct: 491 NSLIF--GLCRVDEMEDALALYRDMVL--EGVIANSVTFNTLIHAFLRRGEIQEALKLVN 546
Query: 301 D-------------------------VAELLGMMVE-DHKRLQPNVKTYALLVECFTKYC 334
D V + LG+ E K L P++ T +L+ F
Sbjct: 547 DMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAG 606
Query: 335 AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY---LRALCREGRIIELLEALEAM-A 390
V A+ R ++H F + Y + LC+ GRI E L E + A
Sbjct: 607 KVHNALEFMR---------DMIHR--GFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQA 655
Query: 391 KDNQPVPPRAMILSRKYRTLVSSWI 415
+ QP S Y TL+ W+
Sbjct: 656 EGIQPD-------SITYNTLI-CWL 672
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 23/267 (8%)
Query: 73 MEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS 132
+ L +H + +A D+ +M + G P +F+ L+ + E A+ + +
Sbjct: 459 ISALCKHGKIHEAL---DMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVL 515
Query: 133 AGVRPLHETLIALARLFGSKGLATKGLEILAAM-------EKINYDIRQAWLILVEELVR 185
GV T L F +G + L+++ M ++I Y+ L++ L +
Sbjct: 516 EGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNG------LIKALCK 569
Query: 186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH 245
+E +F + GL + +++I C AG NALE +M G
Sbjct: 570 TGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVT 629
Query: 246 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
+N L++ G + A FE ++ + ++PD+ TYN +I R ++D D L
Sbjct: 630 YNSLINGLCKRGRIQEALNLFEKLQ--AEGIQPDSITYNTLICWLCREGAFD---DACFL 684
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTK 332
L VE+ PN T+ +LV F K
Sbjct: 685 LYRGVENG--FVPNDVTWNILVYNFGK 709
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 109/295 (36%), Gaps = 19/295 (6%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+++ DM A G P ++ L+ + G E A L+ L+ G AL
Sbjct: 403 ELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISAL 462
Query: 150 GSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G + L++ M DI + L+ L R +EDA ++ G+ A
Sbjct: 463 CKHGKIHEALDMFGEMSSKGCKPDIF-TFNSLIFGLCRVDEMEDALALYRDMVLEGVIAN 521
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
++ +I + G+ AL++ +M G +N L+ G E FE
Sbjct: 522 SVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFE 581
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M + P T N +I + A +V + E + M+ H+ P++ TY L+
Sbjct: 582 EMI--RKGLTPSIITCNILINGFCTA---GKVHNALEFMRDMI--HRGFSPDIVTYNSLI 634
Query: 328 ECFTKYCAVTEAIRHFRALQ---------NYEGGTKVLHNEGNFGDPLSLYLRAL 373
K + EA+ F LQ Y L EG F D L R +
Sbjct: 635 NGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGV 689
Score = 43.1 bits (100), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 133/314 (42%), Gaps = 30/314 (9%)
Query: 84 DAPRV-NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LH 139
+ P V ++V YDM++ G+SP +F ++ A + + + A L+ G P ++
Sbjct: 189 NCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIY 248
Query: 140 ETLI-ALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVF 196
+TLI AL++ + + L++L M + D+ ++ N+ LE A K+
Sbjct: 249 QTLIDALSK----RDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGA-KLV 303
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
R G D Y ++ CK A + ++ HFN L++
Sbjct: 304 DRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPG----PNVVHFNTLVNGFVRN 359
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G A A + Y+ PD T++ ++ + + EL+ M D K
Sbjct: 360 GRLNEATAFVYDKMINNGYV-PDVFTFSTLVNGLCKKGLFG---SALELVNDM--DAKGC 413
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 376
+PN+ TY +L++ F K + EA R + +G + L+ G + + ALC+
Sbjct: 414 KPNLNTYTILIDGFCKKGQLEEAGLILREMLT-KGFS--LNTVG-----YNALISALCKH 465
Query: 377 GRIIELLEALEAMA 390
G+I E L+ M+
Sbjct: 466 GKIHEALDMFGEMS 479
>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
[Vitis vinifera]
gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 46/241 (19%)
Query: 145 LARLFGSKGLATKGLEIL--AAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+ R+ G + + L +L ++E+ + D+R AW ++ R E A +F + K
Sbjct: 180 MVRILGRESQHSVALRLLDEISVEEYSLDVR-AWTTILHAYSRIGKYERAITMFEKMRKT 238
Query: 203 GLRATDEIYDLMIAEDCKAGD------------HSNALEI-----AYEMEAAGR------ 239
GL T Y++M+ K G SN LE + + A GR
Sbjct: 239 GLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDE 298
Query: 240 -------------MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286
+A TF +N LL GI A + + ME ++ PD TYN +
Sbjct: 299 ARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEME--KNNCPPDLVTYNEL 356
Query: 287 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ AY RA + ++ A+ + M+ K + PN TY ++ + K +A+ FR +
Sbjct: 357 VAAYVRAGFH---EEGADFIDTMIR--KGIMPNAITYTTVINAYGKAGKEDKALSFFRQM 411
Query: 347 Q 347
+
Sbjct: 412 K 412
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 117/306 (38%), Gaps = 24/306 (7%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D++ DM + G +P +++ ++ G H+ + S G P +T AL +
Sbjct: 441 DMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAY 500
Query: 150 GSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G G +++ M K + + L+ L R E A V L G + +
Sbjct: 501 GRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNE 560
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC----QATCGIPEVAFA 264
Y LM+ K G+ +I E+ + L+ +A G+ E AF
Sbjct: 561 TSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGM-ERAFQ 619
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
F Y KPD +N ++ + + + YDR ++ L+ LQP++ TY
Sbjct: 620 EFCKHGY-----KPDLVLFNSMLSIFAKNKMYDRAHEMLRLI-----RESGLQPDLVTYN 669
Query: 325 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLE 384
L++ + + + + +Q G ++ + ++ CR+G + E +
Sbjct: 670 SLMDMYARGGECWKGEEILKGIQKSGGKPDLV--------SYNTVIKGFCRQGLMQEAIR 721
Query: 385 ALEAMA 390
L M
Sbjct: 722 TLSEMT 727
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 93/247 (37%), Gaps = 14/247 (5%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
++ +M P +++ LV AY G HE + + G+ P T + +
Sbjct: 336 SILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAY 395
Query: 150 GSKGLATKGLEILAAMEKI----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
G G K L M++ N A L ++ + R LE+ + G
Sbjct: 396 GKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSR---LEEMIDMLCDMRSNGCA 452
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
++ M+A G H + EM++ G FN L+ CG
Sbjct: 453 PNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKM 512
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+E M + P TYN ++ A R ++ + V +L M K +PN +Y+L
Sbjct: 513 YEEMI--KAGFTPCVTTYNALLNALARRGDWEAAESV--ILDM---KSKGFKPNETSYSL 565
Query: 326 LVECFTK 332
++ C+ K
Sbjct: 566 MLNCYAK 572
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 95/238 (39%), Gaps = 9/238 (3%)
Query: 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA-TKGLEILA 163
R++ ++ AY+ G +E A+ ++ G+ P T + ++G G + K L +L
Sbjct: 210 RAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLD 269
Query: 164 AMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAG 222
M + + ++ R L++A K F R G A Y+ ++ KAG
Sbjct: 270 EMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAG 329
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
+S AL I EME +N L++ G E A F + + M P+ T
Sbjct: 330 IYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEG-ADFIDTMIRKGIM-PNAIT 387
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
Y VI AY +A D+ + PNV TY ++ K + E I
Sbjct: 388 YTTVINAYGKAGKEDKALSFFRQM-----KESGCVPNVCTYNAILGMLGKKSRLEEMI 440
>gi|48716454|dbj|BAD23061.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
[Oryza sativa Japonica Group]
Length = 580
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 15/204 (7%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L +++ A KVF + + G+ +Y+ M+ KAGD + A + M+AAG
Sbjct: 151 LLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESLMTRMDAAG 210
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
F FN +++ G+ A E ME +K D T+N +I + R
Sbjct: 211 VPLDRFSFNTVIALYCRKGMQYEAMCVRERME--NQGVKADVVTWNSLIHGLCKER---R 265
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
V++ ++LL M + P+ TY LV+ + + + EA++ L+ +L
Sbjct: 266 VKEASQLLREMAM--AGVAPDHVTYTTLVDGYCRAGDLEEAVK----LRGEMEAMGMLPG 319
Query: 359 EGNFGDPLSLYLRALCREGRIIEL 382
+ + LR LC +G++ E+
Sbjct: 320 VATY----NAILRKLCEDGKMKEV 339
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 13/219 (5%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL- 138
A++R V M AG++ ++ ++ GD A + R +AGV PL
Sbjct: 156 AKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESLMTRMDAAGV-PLD 214
Query: 139 ---HETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDAN 193
T+IAL + KG+ + + + ME + D+ W L+ L + + +++A+
Sbjct: 215 RFSFNTVIAL---YCRKGMQYEAMCVRERMENQGVKADV-VTWNSLIHGLCKERRVKEAS 270
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
++ A G+ Y ++ C+AGD A+++ EMEA G + +N +L +
Sbjct: 271 QLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVATYNAIL--R 328
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
C ++ E E ++ D T N +I AY +
Sbjct: 329 KLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCK 367
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/335 (20%), Positives = 127/335 (37%), Gaps = 52/335 (15%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+ AG++P SF+ L+ ++ + A+ + +P T + L G
Sbjct: 144 EMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAG 203
Query: 154 LATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
+ K E+ M + + R +V L++ K +++A +VF + K G Y
Sbjct: 204 MDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAY 263
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+ MI KAG AL++ M A + T + L++ G E A F M
Sbjct: 264 NTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVM-- 321
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR---------------- 315
+P++ Y +I + ++ R+++ L MVE R
Sbjct: 322 AASGFRPNSVIYTSLIHGFAKS---GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKS 378
Query: 316 -----------------LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
+PNV TY +++ +K V A R + + + H
Sbjct: 379 GNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGM--------IAH- 429
Query: 359 EGNFGDPLS--LYLRALCREGRIIELLEALEAMAK 391
G F D ++ L C+ GR+ E + L+ + K
Sbjct: 430 -GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDK 463
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 95/402 (23%), Positives = 151/402 (37%), Gaps = 38/402 (9%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDH-EGAMHSLKRELSAGVRP---LHETLI-A 144
+V ++M+A G P R+ H +V L + A + G P + T+I
Sbjct: 210 EVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDG 269
Query: 145 LARLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
LA+ G A + L++L M K + ILV L + LE A ++F A G
Sbjct: 270 LAK----AGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
R IY +I K+G A + EM AG ++ G E A
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAA 385
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+FE M G KP+ TY +IQ ++ RV + ++ M+ H P+ TY
Sbjct: 386 KSFEEMMRGG--CKPNVVTYTTIIQGLSK---IGRVANAFRIMKGMIA-HGCF-PDSVTY 438
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY---LRALCREGRI- 379
L++ F K + EA + L L LY ++ LC G +
Sbjct: 439 ICLLDGFCKLGRLDEAAQLLDELDKCSSSPN-----------LQLYSSLVKGLCDGGSVE 487
Query: 380 ---IELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYIS 436
+L E +A A++ P ++I+ + Q G + D I
Sbjct: 488 NTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNIL 547
Query: 437 EGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCL 478
GL R+ V R D + VG++ P ++ C+
Sbjct: 548 INGLCRSRENRVERAFALLHDLEMVGYL---PDAVTYTPLCI 586
>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
Length = 821
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 46/241 (19%)
Query: 145 LARLFGSKGLATKGLEIL--AAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+ R+ G + + L +L ++E+ + D+R AW ++ R E A +F + K
Sbjct: 180 MVRILGRESQHSVALRLLDEISVEEYSLDVR-AWTTILHAYSRIGKYERAITMFEKMRKT 238
Query: 203 GLRATDEIYDLMIAEDCKAGD------------HSNALEI-----AYEMEAAGR------ 239
GL T Y++M+ K G SN LE + + A GR
Sbjct: 239 GLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDE 298
Query: 240 -------------MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286
+A TF +N LL GI A + + ME ++ PD TYN +
Sbjct: 299 ARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEME--KNNCPPDLVTYNEL 356
Query: 287 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ AY RA + ++ A+ + M+ K + PN TY ++ + K +A+ FR +
Sbjct: 357 VAAYVRAGFH---EEGADFIDTMIR--KGIMPNAITYTTVINAYGKAGKEDKALSFFRQM 411
Query: 347 Q 347
+
Sbjct: 412 K 412
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 117/306 (38%), Gaps = 24/306 (7%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D++ DM + G +P +++ ++ G H+ + S G P +T AL +
Sbjct: 441 DMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAY 500
Query: 150 GSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G G +++ M K + + L+ L R E A V L G + +
Sbjct: 501 GRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNE 560
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC----QATCGIPEVAFA 264
Y LM+ K G+ +I E+ + L+ +A G+ E AF
Sbjct: 561 TSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGM-ERAFQ 619
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
F Y KPD +N ++ + + + YDR ++ L+ LQP++ TY
Sbjct: 620 EFCKHGY-----KPDLVLFNSMLSIFAKNKMYDRAHEMLRLI-----RESGLQPDLVTYN 669
Query: 325 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLE 384
L++ + + + + +Q G ++ + ++ CR+G + E +
Sbjct: 670 SLMDMYARGGECWKGEEILKGIQKSGGKPDLV--------SYNTVIKGFCRQGLMQEAIR 721
Query: 385 ALEAMA 390
L M
Sbjct: 722 TLSEMT 727
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 93/247 (37%), Gaps = 14/247 (5%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
++ +M P +++ LV AY G HE + + G+ P T + +
Sbjct: 336 SILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAY 395
Query: 150 GSKGLATKGLEILAAMEKI----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
G G K L M++ N A L ++ + R LE+ + G
Sbjct: 396 GKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSR---LEEMIDMLCDMRSNGCA 452
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
++ M+A G H + EM++ G FN L+ CG
Sbjct: 453 PNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKM 512
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+E M + P TYN ++ A R ++ + V +L M K +PN +Y+L
Sbjct: 513 YEEMI--KAGFTPCVTTYNALLNALARRGDWEAAESV--ILDM---KSKGFKPNETSYSL 565
Query: 326 LVECFTK 332
++ C+ K
Sbjct: 566 MLNCYAK 572
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 95/238 (39%), Gaps = 9/238 (3%)
Query: 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA-TKGLEILA 163
R++ ++ AY+ G +E A+ ++ G+ P T + ++G G + K L +L
Sbjct: 210 RAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLD 269
Query: 164 AMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAG 222
M + + ++ R L++A K F R G A Y+ ++ KAG
Sbjct: 270 EMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAG 329
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
+S AL I EME +N L++ G E A F + + M P+ T
Sbjct: 330 IYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEG-ADFIDTMIRKGIM-PNAIT 387
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
Y VI AY +A D+ + PNV TY ++ K + E I
Sbjct: 388 YTTVINAYGKAGKEDKALSFFRQM-----KESGCVPNVCTYNAILGMLGKKSRLEEMI 440
>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 957
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 119/294 (40%), Gaps = 22/294 (7%)
Query: 45 RQQKHGDSLLSTNGSVVSAAEQGLRL--IFMEELMQHARNRDAPRVNDVIYDMIAAGLSP 102
+ ++H D+L+ +V E L I + L + R DA DM AAG P
Sbjct: 189 KAERHSDALMLWEDLLVEKLEPNFVLYAIIIHILNKEGRTEDAVHT---FKDMRAAGHLP 245
Query: 103 GPRSFHGLVVAYTLNGDH---EGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
++ ++ A G + E +K++ G+ P T + ++ G
Sbjct: 246 DELLYNTIICALGKLGRYQESEALYLDMKKQ---GIVPSKFTYTIMINVWSKAGRFASAA 302
Query: 160 EILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
E LA M++ + + ++ + E+A K+F GL + ++ Y M
Sbjct: 303 ETLAEMQRSGCIADEVVYCSIINMYGKAGLYEEAEKIFKEMDTLGLLSHEKSYTSMAKVR 362
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMK 277
+AG H+ AL++ M G + T +N LL C G E A + +M E G
Sbjct: 363 AEAGRHAEALKLFDVMAEKGLLTTRMTWNTLLHCFVRIGDVEQATKVYNDMVEAGS---- 418
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ TY +I Y++ + V+D LL M E ++P+ Y V+ +
Sbjct: 419 ANVVTYGNMINLYSK---FQMVEDAENLLAEMRESG--VKPDEYIYGSFVKLYC 467
>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
Length = 661
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 115/281 (40%), Gaps = 17/281 (6%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M G++P ++ LV AYT G E A LK + GV+P + F
Sbjct: 314 VLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFR 373
Query: 151 SKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G K +L M + D R + ++++ + L A F R + G+
Sbjct: 374 DRGEWQKAFAVLREMHASGVRPD-RHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDV 432
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
++ +I CK G H A+E+ EM + T +N +++ E + E
Sbjct: 433 VTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGE----EQRWEGVEA 488
Query: 269 M--EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
M E E + P+ TY ++ Y R+ + D E + L+P+ Y L
Sbjct: 489 MLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAM-----KADGLKPSPTMYHAL 543
Query: 327 VECFTKYCAVTEAIRHFRALQ--NYEGGTKVLHNEGN-FGD 364
V + + A+ +A++ E T VL++ N FG+
Sbjct: 544 VNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGE 584
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 19/255 (7%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG- 158
L P F L+ A+ + A+ L + G+ P + AL GS +
Sbjct: 217 LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 276
Query: 159 ---LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
LE A E I R A+ L++ V+ L++A +V ++ G+ + Y L++
Sbjct: 277 ALFLEFFLAGE-IKPRTR-AYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 334
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
+AG +A + EMEA G +++ F+ +L+ G + AFA M
Sbjct: 335 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMH--ASG 392
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
++PD YN +I + + Y+ + + M E+ ++P+V T+ L++ K
Sbjct: 393 VRPDRHFYNVMIDTFGK---YNCLGHAMDAFDRMREEG--IEPDVVTWNTLIDAHCK--- 444
Query: 336 VTEAIRHFRALQNYE 350
RH RA++ ++
Sbjct: 445 ---GGRHDRAIELFD 456
Score = 40.4 bits (93), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GL+ + +Y ++ + G +AL + M A G A+T N L++ A
Sbjct: 532 GLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEA 591
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
F+ + M+ E+ ++PD TY +++A R E +++V + E
Sbjct: 592 FSVLQFMK--ENGLRPDVITYTTLMKALIRVEQFEKVPVIYE 631
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 10/252 (3%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM+ GL P +F L+ G+ + A + + V P +L + G
Sbjct: 277 DMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVG 336
Query: 154 LATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
++ + + +E+ ++ D+ + IL+ L E+A +F + K G+ A Y
Sbjct: 337 DVSEAMALFLELERFEVSPDVF-TYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTY 395
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+ +I CK G ALEI +M G F+ L+ C I + A E
Sbjct: 396 NSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLI--DGYCKIRNLQAAMGIYSEM 453
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ PD TY +I + + Y +++ +L M+++ + PN T + L++
Sbjct: 454 VIKSLSPDVVTYTAMIDGHCK---YGSMKEALKLYSDMLDN--GITPNCYTISCLLDGLC 508
Query: 332 KYCAVTEAIRHF 343
K +++A+ F
Sbjct: 509 KDGKISDALELF 520
Score = 47.0 bits (110), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 113/265 (42%), Gaps = 27/265 (10%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ IL+ L + +E+A + + G+ Y+ ++ CK + AL + +M
Sbjct: 219 VYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDM 278
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
G + F L+ G + A F NM + + P+ YN +I AY
Sbjct: 279 LGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMI--KFSVTPNIAVYNSLIDAYC--- 333
Query: 295 SYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
+V DV+E + + +E + + P+V TY++L+ C+V+ R A +E T
Sbjct: 334 ---KVGDVSEAMALFLELERFEVSPDVFTYSILIR---GLCSVS---RTEEAGNIFEKMT 384
Query: 354 K--VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV 411
K +L N + + C+EG++ + LE M ++ V P + S TL+
Sbjct: 385 KEGILANSVTYNS----LIDGCCKEGKMDKALEICSQMTENG--VEPNVITFS----TLI 434
Query: 412 SSWIEPLQEEAELGYEIDYIARYIS 436
+ + +A +G + + + +S
Sbjct: 435 DGYCKIRNLQAAMGIYSEMVIKSLS 459
>gi|302781494|ref|XP_002972521.1| hypothetical protein SELMODRAFT_52385 [Selaginella moellendorffii]
gi|300159988|gb|EFJ26607.1| hypothetical protein SELMODRAFT_52385 [Selaginella moellendorffii]
Length = 450
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 24/223 (10%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+E LVR DA +F R ++ + Y +++ C AG A E+ EM+ G
Sbjct: 12 LLETLVRCGRSMDAYGIFKRFSRM-FKPNAFTYTVLVRGLCDAGRIDEACEVFNEMQGRG 70
Query: 239 RM-ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
+ A T ++ LL+ G + AF+ ++ M+ + +PD+ TY+ +I +R D
Sbjct: 71 GIEAKTAIYSVLLNGLLRSGKLDDAFSYYQMMQ---ETCQPDSSTYSTMIYELSRQGRLD 127
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
VA+ MV+ K P++ + +E + V++A + R ++
Sbjct: 128 HATKVAQ---EMVDKDK--IPDMPCLGVALEILCRCGRVSDAWKLLRMMK---------- 172
Query: 358 NEGNF---GDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
E +F P + LR C GR+ E L+ E M + + P
Sbjct: 173 -EKHFKPDAVPHTYVLRKFCEAGRLDEALKGFEEMTGNEKCEP 214
>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 114/265 (43%), Gaps = 13/265 (4%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M++ G + +++ L+ A N + + L + + G +P T + +G
Sbjct: 281 EMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMIEGGCQPNQFTYSITLDILAKEG 340
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ E+L ++ Y + + LV+ L ++ ++ +A+ VF + + +
Sbjct: 341 QLHRLNEVLDICDR--YMNKSIYSYLVKSLSKSGHVSEAHNVFCQMWNSYETGDRDAFVS 398
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT--FENMEY 271
M+ C +G A+++ + M G +N + S A + +V+F T F+ M+
Sbjct: 399 MLEVLCNSGKTLEAIDLLHMMPEKGVATDVGMYNMVFS--ALGKLKQVSFITSLFDKMK- 455
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ + PD TYN +I +Y R D+ + E + + +P+V TY L+ C
Sbjct: 456 -ANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDM-----NASSCKPDVITYNSLINCLG 509
Query: 332 KYCAVTEAIRHFRALQNYEGGTKVL 356
K + EA F+ +Q G V
Sbjct: 510 KNGDLDEAHMLFKEMQEKGYGPDVF 534
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y++MI+ + G A + +M A+ +N L++C G + A F+ M+
Sbjct: 466 YNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITYNSLINCLGKNGDLDEAHMLFKEMQ 525
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E PD TY+ +I+ + ++ D ++ L M+ E PNV TY +L++C
Sbjct: 526 --EKGYGPDVFTYSILIECFGKSNKVDMACNL--FLDMIAEG---CIPNVVTYNILLDCL 578
Query: 331 TKYCAVTEAIRHFRALQ 347
++ EA +H+ ++
Sbjct: 579 ERHGKTAEAHKHYETMK 595
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/335 (20%), Positives = 127/335 (37%), Gaps = 52/335 (15%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+ AG++P SF+ L+ ++ + A+ + +P T + L G
Sbjct: 144 EMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAG 203
Query: 154 LATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
+ K E+ M + + R +V L++ K +++A +VF + K G Y
Sbjct: 204 MDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAY 263
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+ MI KAG AL++ M A + T + L++ G E A F M
Sbjct: 264 NTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVM-- 321
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR---------------- 315
+P++ Y +I + ++ R+++ L MVE R
Sbjct: 322 AASGFRPNSVIYTSLIHGFAKS---GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKS 378
Query: 316 -----------------LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
+PNV TY +++ +K V A R + + + H
Sbjct: 379 GNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGM--------IAH- 429
Query: 359 EGNFGDPLS--LYLRALCREGRIIELLEALEAMAK 391
G F D ++ L C+ GR+ E + L+ + K
Sbjct: 430 -GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDK 463
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 104/256 (40%), Gaps = 17/256 (6%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDH-EGAMHSLKRELSAGVRP---LHETLI-A 144
+V ++M+A G P R+ H +V L + A + G P + T+I
Sbjct: 210 EVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDG 269
Query: 145 LARLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
LA+ G A + L++L M K + ILV L + LE A ++F A G
Sbjct: 270 LAK----AGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
R IY +I K+G A + EM AG ++ G E A
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAA 385
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+FE M G KP+ TY +IQ ++ RV + ++ M+ H P+ TY
Sbjct: 386 KSFEEMMRGG--CKPNVVTYTTIIQGLSK---IGRVANAFRIMKGMIA-HGCF-PDSVTY 438
Query: 324 ALLVECFTKYCAVTEA 339
L++ F K + EA
Sbjct: 439 ICLLDGFCKLGRLDEA 454
>gi|302821834|ref|XP_002992578.1| hypothetical protein SELMODRAFT_43484 [Selaginella moellendorffii]
gi|300139647|gb|EFJ06384.1| hypothetical protein SELMODRAFT_43484 [Selaginella moellendorffii]
Length = 427
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+E LVR DA +F + + Y +++ C AG A E+ EM+ G
Sbjct: 8 LLETLVRCGRSMDAYGIFKQRFSRMFKPNAFTYTVLVRGLCDAGRIDEACEVFNEMQGRG 67
Query: 239 RM-ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
+ A T ++ LL+ G + AF+ ++ M ++ +PD+ TY+ +I +R D
Sbjct: 68 GIEAKTAIYSVLLNGLLRSGKLDDAFSYYQMM---QETCQPDSSTYSTMIYELSRQGRLD 124
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
VA+ MV+ K P++ + +E + V++A + R ++
Sbjct: 125 HATKVAQ---EMVDKDK--IPDMPCLGVALEILCRCGRVSDAWKLLRMMK---------- 169
Query: 358 NEGNF---GDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
E +F P + LR C GR+ E L+ E M + + P
Sbjct: 170 -EKHFKPDAVPHTYVLRKFCEAGRLDEALKGFEEMTGNEKCEP 211
>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 537
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 91/219 (41%), Gaps = 9/219 (4%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
+F L+ Y G A+H R G P + K A++ ++
Sbjct: 188 TFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSL 247
Query: 166 -EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
++ D+ + LV R + +A KVF G+ Y ++I C+ G
Sbjct: 248 KDRFEPDV-IVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQI 306
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
S A ++ +M +G FN+L+ G PE + M+ + +PDT TYN
Sbjct: 307 SRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMK--KLGCEPDTITYN 364
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+I+ + R E+ +++ ++L M++ K+ + N T+
Sbjct: 365 FLIETHCRDEN---LENAVKVLNTMIK--KKCEVNASTF 398
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 26/221 (11%)
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
ET L R + GLA++ + ME Q A+ I++ L R + +A F
Sbjct: 187 ETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQS-FFD 245
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
K +Y ++ C+AG+ S A ++ +M+ AG + ++ ++ CG
Sbjct: 246 SLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQ 305
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL-- 316
A F +M + P+ T+N +++ + +A R + V ++ M K+L
Sbjct: 306 ISRAHDVFADML--DSGCAPNAITFNNLMRVHVKA---GRPEKVLQVYNQM----KKLGC 356
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+P+ TY L+E H R +N E KVL+
Sbjct: 357 EPDTITYNFLIE------------THCRD-ENLENAVKVLN 384
>gi|357119779|ref|XP_003561611.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Brachypodium distachyon]
Length = 547
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 121/299 (40%), Gaps = 22/299 (7%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALARLFGSKGLA 155
G P + LV A+ +G+ +L +SAG P +++ +I LF K +
Sbjct: 199 GSPPSSAAAADLVKAFAASGNFPKVSDTLHLMISAGYPPDTVVYQCIIH--GLFAHK-MG 255
Query: 156 TKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+ L + ++ YDI + +++ L + + DA K++ G+ + Y
Sbjct: 256 GEALRVFNEIKLRGYDIDAVTYTTVIDGLCKVGNIVDARKMWDEMVHKGMEPNEYAYCSF 315
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
+ CKAGD A ++ EM G +T N +L+ + A + FE M +
Sbjct: 316 LGYYCKAGDFDMAYKVYGEMLGKGFKESTVSCNIILAGFCVHMRVDEAISVFEGMV--TE 373
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
++ D TYN +IQ + R+ + + ++ L+P V T+ L++ +
Sbjct: 374 GIEHDVFTYNTLIQGLCKV---GRLAEAIRMYQRLLS--SGLEPTVSTFTPLIDTMCEEG 428
Query: 335 AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393
V A+ FR +Q V N+ + C+ R + + L M K N
Sbjct: 429 QVDHAVELFRLMQAKGFEPLVRSNDS--------VINGFCKARRADDAMAWLAGMLKSN 479
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 123/323 (38%), Gaps = 65/323 (20%)
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYL 189
++GV+P T + + S G IL M +KI D + L+ + + L
Sbjct: 249 TSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPD-SFTYGSLISGMCKQGRL 307
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
E+A+K+F + GLR + IY+ +I C G+ A EM G T +N L
Sbjct: 308 EEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSL 367
Query: 250 LSC--------QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
+ +A C I E+ E + PD TYN +I Y R + +
Sbjct: 368 IHALFMEQRTDEAECMIKEIQ----------EKGISPDAITYNILINGYCRCANAKK--- 414
Query: 302 VAELLGMMVEDH---KRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL------------ 346
++ D ++P KTY L+ +K + EA F+ +
Sbjct: 415 -----AFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMF 469
Query: 347 ----------QNYEGGTKVLHNEGNFGDP-----LSLYLRALCREGRIIELLEALEAMAK 391
N +G ++L + P + ++ CREG++ E E + M +
Sbjct: 470 NALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKR 529
Query: 392 DNQPVPPRAMILSRKYRTLVSSW 414
+ + P + + TL+S +
Sbjct: 530 --RGIKPDHI----SFNTLISGY 546
Score = 40.4 bits (93), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 21/227 (9%)
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++D +I C A E Y M+ G + T N LLS E A+ + M
Sbjct: 153 VFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEM 212
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+K T+N +I + + +D +G M + ++PN+ TY +V
Sbjct: 213 --FRLRIKSSVYTFNIMINVLCKEGKLKKAKD---FVGHM--ETSGVKPNIVTYNTIVH- 264
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
YC+ + + A+ K+ + +G +S +C++GR+ E + E M
Sbjct: 265 --GYCS-SGRVEAADAILTTMKRQKIEPDSFTYGSLIS----GMCKQGRLEEASKIFEEM 317
Query: 390 AKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYIS 436
+ + + P A+I Y TL+ + + Y+ + + + IS
Sbjct: 318 VQ--KGLRPSAVI----YNTLIDGFCNKGNLDMASAYKDEMLKKGIS 358
Score = 39.7 bits (91), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 22/242 (9%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+SP +++ L+ Y + + A L++G++P +T +L + K +
Sbjct: 391 GISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEA 450
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI-------- 210
++ +KI + I+ L+ + + ++N ++GA L+ D +
Sbjct: 451 DDLF---KKITSEGVLPDAIMFNALI-DGHCSNSN---VKGAFELLKDMDRMKVPPDEVT 503
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
++ ++ C+ G A E+ EM+ G FN L+S + G + AF M
Sbjct: 504 FNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEML 563
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+ P TYN ++Q + + D + ELL MV K + P+ TY L+E
Sbjct: 564 --DTGFNPTVLTYNALVQGLCKNQEGDLAE---ELLKEMVS--KGMTPDDTTYFTLIEGI 616
Query: 331 TK 332
K
Sbjct: 617 AK 618
>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
Length = 414
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 8/164 (4%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEA 236
ILV+ L R + ++V R + G+ + + + +I+ CKAG +A+ + +M A
Sbjct: 122 ILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVA 181
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
+G M T +N L++ G A ++ M PD T++ +I Y R
Sbjct: 182 SGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMT--RLRCPPDVVTFSSLIDGYCRCGQL 239
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
D D + M + R+QPNV T+++++ K EAI
Sbjct: 240 D---DALRIWSDMAQ--HRIQPNVYTFSIIIHSLCKQNRSDEAI 278
>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 950
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 128/320 (40%), Gaps = 61/320 (19%)
Query: 120 HEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM-------EKINYDI 172
+E A ++ L ++P + R +G T+ L +L M + I Y+
Sbjct: 319 YEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNA 378
Query: 173 RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
L++ YL++A + L +K + Y ++I CK G + A I
Sbjct: 379 ------LIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFK 432
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
EME G + + FN L++ E A F ME KP + R
Sbjct: 433 EMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVR---KP---------SLFLR 480
Query: 293 -AESYDRVQDVAELL---------GMMVEDHKRLQ--------PNVKTYALLVECFTKYC 334
++ D+V D+A L GM+++ +K L P+++TY +L+ F K+
Sbjct: 481 LSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFG 540
Query: 335 AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAMAKD 392
+ A + F+ +Q +G+ D ++ + L R GR + LE E M K
Sbjct: 541 NINGAFKLFKEMQ----------LKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKK 590
Query: 393 NQPVPPRAMILSRKYRTLVS 412
VP S Y+T+++
Sbjct: 591 G-CVPE-----SSTYKTIMT 604
>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
[Vitis vinifera]
Length = 990
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++I+ +AG A++I E+E + FN L++C G + A F+ M
Sbjct: 322 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 381
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E+ + PD TY+ +I+ + + D+V+ L M+ + PN+ TY +L++C
Sbjct: 382 --EEGLSPDVVTYSTLIECFGKT---DKVEMACRLFDEMLAE--GCSPNIVTYNILLDCL 434
Query: 331 TKYCAVTEAIRHFRALQ 347
+ EA+ + L+
Sbjct: 435 ERSGRTAEAVDLYAKLK 451
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 16/143 (11%)
Query: 206 ATDEI-YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+TD + Y+ +++ K S+ ++ +M+ G F +N L+S G E A
Sbjct: 281 STDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVK 340
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRA----ESYDRVQDVAELLGMMVEDHKRLQPNV 320
FE +E KPD ++N +I + E++ R +++ E + L P+V
Sbjct: 341 IFEELE--NSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMRE---------EGLSPDV 389
Query: 321 KTYALLVECFTKYCAVTEAIRHF 343
TY+ L+ECF K V A R F
Sbjct: 390 VTYSTLIECFGKTDKVEMACRLF 412
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 25/241 (10%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
++++ L + LE++ ++F++ + GL Y+ +I K G + EM+
Sbjct: 294 VMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDV 353
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G + +N L++C AF F M+ + +KP+ TY+ +I A+ +
Sbjct: 354 GCVPDIITYNGLINCYCKFEKMPRAFEYFSEMK--NNGLKPNVVTYSTLIDAFCKE---G 408
Query: 298 RVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
+Q +L D +R L PN TY L++ K +TEA + + + G K+
Sbjct: 409 MMQGAIKLF----VDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDM--LQAGVKL 462
Query: 356 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
N +L L LC+ GR+IE E +M KD + P + Y LV +I
Sbjct: 463 -----NIVTYTAL-LDGLCKAGRMIEAEEVFRSMLKDG--ISPNQQV----YTALVHGYI 510
Query: 416 E 416
+
Sbjct: 511 K 511
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 12/232 (5%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GLSP +++ L+ Y G E G P T L + +
Sbjct: 319 GLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRA 378
Query: 159 LEILAAMEKINYDIR---QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
E + M+ N ++ + L++ + ++ A K+F+ + GL + Y +I
Sbjct: 379 FEYFSEMK--NNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLI 436
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
+CKAG+ + A ++ +M AG + LL G A F +M +D
Sbjct: 437 DANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSML--KDG 494
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
+ P+ + Y ++ Y +AE R++D ++L M E + ++P++ Y ++
Sbjct: 495 ISPNQQVYTALVHGYIKAE---RMEDAMKILKQMTECN--IKPDLILYGSII 541
Score = 46.2 bits (108), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 83/424 (19%), Positives = 164/424 (38%), Gaps = 40/424 (9%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L + +++ + V DMI AG++P +++ ++ GD E + + G+
Sbjct: 261 LHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGL 320
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKY-----LE 190
P T +L +G G LE +A++ D+ I+ + N Y +
Sbjct: 321 SPDVVTYNSLIDGYGKVG----SLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMP 376
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
A + F GL+ Y +I CK G A+++ +M G + F + L+
Sbjct: 377 RAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLI 436
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
G A+ +M + +K + TY ++ +A R+ + E+ M+
Sbjct: 437 DANCKAGNLTEAWKLLNDML--QAGVKLNIVTYTALLDGLCKA---GRMIEAEEVFRSML 491
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY- 369
+D + PN + Y LV + K + +A++ + + E N L LY
Sbjct: 492 KDG--ISPNQQVYTALVHGYIKAERMEDAMKILKQM-----------TECNIKPDLILYG 538
Query: 370 --LRALCREGRIIE---LLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAEL 424
+ C + ++ E +LE +++ PV +I + S + QE ++
Sbjct: 539 SIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDV 598
Query: 425 GYEIDYIARYI-----SEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLE 479
G E + + + G+ + R L P+ +Y++ ++ K C+E
Sbjct: 599 GVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVA--VYTSLIDGLCKNNCIE 656
Query: 480 DGKK 483
KK
Sbjct: 657 SAKK 660
>gi|115473581|ref|NP_001060389.1| Os07g0635800 [Oryza sativa Japonica Group]
gi|22293699|dbj|BAC10044.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113611925|dbj|BAF22303.1| Os07g0635800 [Oryza sativa Japonica Group]
gi|125601219|gb|EAZ40795.1| hypothetical protein OsJ_25273 [Oryza sativa Japonica Group]
Length = 705
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 12/195 (6%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
++ +V Y +NG + A +L+ G++P H T++++ L + +G E+ A +
Sbjct: 430 WNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYV- 488
Query: 167 KINYDIRQAWLI---LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD 223
I Y I + L++ + +LE A +VF + R T Y+++I+ K
Sbjct: 489 -IKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTE---RNT-VTYNILISSFGKHNH 543
Query: 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY-MKPDTET 282
AL M+ G F LLSC + G+ + + +M + DY + P+ E
Sbjct: 544 EDQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYHSMLH--DYNISPEKEH 601
Query: 283 YNCVIQAYTRAESYD 297
Y+C++ Y+R D
Sbjct: 602 YSCIVDLYSRCGKLD 616
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 116/274 (42%), Gaps = 30/274 (10%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHS---- 126
IF+ L + + A D I DM A G+SP +++ LV Y G G M+
Sbjct: 205 IFINGLCRAGKLNKAE---DAIEDMKAWGISPNVVTYNTLVDGYCKRGS-AGKMYKAEAF 260
Query: 127 LKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--------I 178
+K L+ + P T L F E +AA +K ++++ L
Sbjct: 261 MKEMLANKICPNEVTFNTLIDGFCKD-------ENVAAAKKAFEEMQKQGLKPNIVTYNS 313
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L N LE+A ++ + GL+ Y+ +I CK A ++ ++
Sbjct: 314 LINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQE 373
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ FN ++ G+ E F+ +M ++ + P+ TYNC+I R +
Sbjct: 374 LVPNVITFNTMIDAYCKEGMMEEGFSLCSSML--DEGILPNVSTYNCLIAGLCRKQD--- 428
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+Q ELL M ++K L+ +V TY +L++ K
Sbjct: 429 LQAAKELLNEM--ENKGLKGDVVTYNILIDGLCK 460
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 100/235 (42%), Gaps = 18/235 (7%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSL----KRELSAGVRPLHETLIALARLFG 150
M+ GL P +++ L+ + + A K+EL V + + A +
Sbjct: 334 MVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCK--- 390
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G+ +G + ++M E I ++ + L+ L R + L+ A ++ GL+
Sbjct: 391 -EGMMEEGFSLCSSMLDEGILPNV-STYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDV 448
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y+++I CK NA ++ EM G +N L+ G + A
Sbjct: 449 VTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTR 508
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
ME ++ +P+ TYN +I+ Y + ++++ LL M+E K L PN TY
Sbjct: 509 ME--KERKQPNVVTYNVLIKGYCKI---NKLEAANGLLNEMLE--KGLNPNRTTY 556
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 19/186 (10%)
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEM-EAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
++++++ CK GD +A EI EM + ++ L+ G + AF FE
Sbjct: 235 VFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEE 294
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
M D++ PD TYN +I + R DR ++V + + PNV Y+ LV+
Sbjct: 295 M-VSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFM-----KSNGCYPNVYNYSALVD 348
Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEAL 386
C V + L++ +G + G D ++ + LCR G+ E +E L
Sbjct: 349 ---GLCKVGK-------LEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELL 398
Query: 387 EAMAKD 392
E M ++
Sbjct: 399 EEMKEN 404
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LV+ L + LEDA V GL+ Y +I C+ G A+E+ EM+ G
Sbjct: 346 LVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENG 405
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
A + FN LL G E A E + Y+ + +Y V+ + T+ R
Sbjct: 406 CQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYL--NKGSYRIVLNSLTQKCELKR 463
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+ ELLG+M+ + QP+ T L+ C K V +A
Sbjct: 464 AK---ELLGLMLR--RGFQPHYATSNELLVCLCKAGMVDDA 499
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 8/216 (3%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDA 192
GV P T L F K L +L M++ + A+ L+ L + K E A
Sbjct: 401 GVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAA 460
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
N++F + ++ +Y +MI K G S A+++ EM+ G + +N L+S
Sbjct: 461 NELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSG 520
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G+ + A + ME E+ PD ++N ++ + R + E+ M
Sbjct: 521 MVRVGMTDEAHSLLRTME--ENGCTPDLNSHNIILNGFARTGG---PKGAIEMFTRM--K 573
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
+ +++P+V +Y ++ C ++ EA + + + +
Sbjct: 574 NSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNS 609
Score = 43.5 bits (101), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 21/212 (9%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+ A +F + GL T +IY ++ K G AL + EM+ G T + + L
Sbjct: 247 DSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTEL 306
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G E A++ F NM ++ KPD N +I +A R+ D +L
Sbjct: 307 IKGVGKAGKVEEAYSIFMNML--KEGCKPDVVLINNLINLLGKA---GRLADAIKLF--- 358
Query: 310 VEDHKRLQ--PNVKTYALLVEC-FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL 366
E+ + LQ PNV TY +++ F +EA + ++ E G V+ + +
Sbjct: 359 -EEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMK--ENG--VVPSSFTY---- 409
Query: 367 SLYLRALCREGRIIELLEALEAM-AKDNQPVP 397
S+ + C+ R+ + L LE M K P P
Sbjct: 410 SILIDGFCKTNRVEKALLLLEEMDEKGFAPCP 441
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 8/242 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ DM+ G+ F ++ + GD A + G+ T AL
Sbjct: 342 VVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLC 401
Query: 151 SKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G + +L ME D+ + +L++ + + +A V + + +
Sbjct: 402 RAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVV 461
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y + CK GD A E+ +EM + G F +N L++ G E A T +M
Sbjct: 462 TYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDM 521
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ E +KPD TY +I A +++ DR LL M++ K ++P + TY +L+
Sbjct: 522 D--EAGLKPDVYTYTTIIGALCQSKELDRAH---SLLQEMLD--KGIKPTIVTYNVLMNG 574
Query: 330 FT 331
F
Sbjct: 575 FC 576
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 8/242 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ DM+ G+ F ++ + GD A + G+ T AL
Sbjct: 342 VVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLC 401
Query: 151 SKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G + +L ME D+ + +L++ + + +A V + + +
Sbjct: 402 RAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVV 461
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y + CK GD A E+ +EM + G F +N L++ G E A T +M
Sbjct: 462 TYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDM 521
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ E +KPD TY +I A +++ DR LL M++ K ++P + TY +L+
Sbjct: 522 D--EAGLKPDVYTYTTIIGALCQSKELDRAH---SLLQEMLD--KGIKPTIVTYNVLMNG 574
Query: 330 FT 331
F
Sbjct: 575 FC 576
>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 683
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 99/242 (40%), Gaps = 36/242 (14%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
++++++ +R K + ANK F + GL ++ E Y+++I KAG+ ALE M+
Sbjct: 393 YIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQ 452
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFEN-MEYGEDYMKPDTETYNCVIQAYTRAE 294
+G FN L++ G A A + ME+G + PD T+ +I
Sbjct: 453 ESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHG---LMPDVITFTSLIDGLCHTH 509
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR------------- 341
D D M E R PNV+TY +L+ V++AI
Sbjct: 510 QLD---DAFNCFSEMSEWGVR--PNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPD 564
Query: 342 ---------HFRALQNYEGGTKVLHNEGNFGDPLSLY-----LRALCREGRIIELLEALE 387
F ++ E K+ ++ +G Y ++ALC E R+ E E +
Sbjct: 565 AYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIIL 624
Query: 388 AM 389
AM
Sbjct: 625 AM 626
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY----EM 234
LVE R A++VF++ + GLR + IY+ +IA +AG A++ AY +M
Sbjct: 151 LVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAG----AVDAAYLRFQQM 206
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
A G F +N L+ GI + A + ME ++P+ TY ++ + A
Sbjct: 207 PADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAG--IRPNVVTYTMLVDGFCNA- 263
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
RV++ +L M E K + TY LV
Sbjct: 264 --SRVEEAVCVLERMKE--KGVSATEATYRSLVH 293
>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Brachypodium distachyon]
Length = 851
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 10/211 (4%)
Query: 97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156
AAGL+P S+ L+ NG++E + + K GV+P T++ L R L
Sbjct: 436 AAGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLK 495
Query: 157 KGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
KG E+ + YD L++ + L A ++F R L + + +
Sbjct: 496 KGKELHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLA 555
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME--YGE 273
G A+ + +++ +G + F LL+ + G+ + F+NME YG
Sbjct: 556 VH----GQSHEAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYG- 610
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
+ P E Y C++ R+ D + E
Sbjct: 611 --VVPTAENYACMVDLLARSGYLDEAMALIE 639
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 8/242 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ DM+ G+ F ++ + GD A + G+ T AL
Sbjct: 342 VVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLC 401
Query: 151 SKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G + +L ME D+ + +L++ + + +A V + + +
Sbjct: 402 RAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVV 461
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y + CK GD A E+ +EM + G F +N L++ G E A T +M
Sbjct: 462 TYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDM 521
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ E +KPD TY +I A +++ DR LL M++ K ++P + TY +L+
Sbjct: 522 D--EAGLKPDVYTYTTIIGALCQSKELDRAHS---LLQEMLD--KGIKPTIVTYNVLMNG 574
Query: 330 FT 331
F
Sbjct: 575 FC 576
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/359 (21%), Positives = 144/359 (40%), Gaps = 31/359 (8%)
Query: 87 RVND--VIYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
+VND ++Y+ M+ +G +P + L+ + G E K + G P L
Sbjct: 496 KVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLN 555
Query: 144 ALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
G KG + + + + D+R ++ IL+ LV+ + +D K+F +
Sbjct: 556 NYMDCVFKAGEIEKGRALFEEIKAQGLTPDVR-SYSILIHGLVKGGFSKDTYKLFYEMKE 614
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
GL Y+++I CK+G + A ++ EM+ G T + ++ A +
Sbjct: 615 QGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDE 674
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A+ FE E + + Y+ +I + + D + E L K L PN
Sbjct: 675 AYMLFE--EAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELM-----QKGLTPNTY 727
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381
T+ L++ K + EA+ F+ ++N K NE + S+ + LC+ + +
Sbjct: 728 TWNCLLDALVKAEEIDEALVCFQNMKN----LKCPPNEVTY----SIMVNGLCKVRKFNK 779
Query: 382 LLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGL 440
+ M K Q + P + Y T++S L + D R+ S GG+
Sbjct: 780 AFVFWQEMQK--QGLKPNTI----TYTTMISG----LARVGNVLEAKDLFERFKSSGGI 828
>gi|413936859|gb|AFW71410.1| hypothetical protein ZEAMMB73_528560 [Zea mays]
Length = 671
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 113/266 (42%), Gaps = 20/266 (7%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V ++I +M+ P +F L+ + N E A+ L++ G P + +
Sbjct: 337 VGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIIS 396
Query: 148 LFGSKGLATKGLEILAAM----EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
F + A L++L +M + I+++ +++ L + K DA ++ + K
Sbjct: 397 CFSDQARADDALKLLKSMLCKPDTISFNA------VLKCLCKAKRWYDAVELVAKMLKKD 450
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
R + ++++I C+ G +A+E+ M M ++ L++ + G+ E+AF
Sbjct: 451 CRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAF 510
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
F +M + D +YN ++ A +D D EL+ MV + PN T+
Sbjct: 511 DLFRSMP-----CRADIFSYNATLKGLCMAARWD---DAGELIADMVTED--CLPNEVTF 560
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNY 349
+L+ + V AI + + Y
Sbjct: 561 NILISSLCQKGLVNRAIDVYEQMPKY 586
Score = 40.0 bits (92), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 110/283 (38%), Gaps = 41/283 (14%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
IL+++L + L DA +V L K A ++ ++A C+ G +A + A+
Sbjct: 121 ILIKKLCARRRLADAERV-LEALKASGAADAVSHNTLVAGYCRDGSLGDAERVVEAARAS 179
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G A + L+ G A +M + PDT TYN V++ A+ ++
Sbjct: 180 G-TANVVTYTALIDGYCRSGRLADALRLIASMP-----VAPDTYTYNTVLKGLCCAKQWE 233
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL- 356
+ + EL+ M+ + PN T+A + F + + A+ + Y V+
Sbjct: 234 QAE---ELMREMIRNS--CHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVII 288
Query: 357 --------HNEGNFGDPLSLY---------------LRALCREGRIIELLEALEAMAKDN 393
G + L L L+ LC GR E+ E + M + +
Sbjct: 289 YSTLVNGFSEHGRVDEALKLLNTMLCRPNTVCYNAALKGLCIAGRWEEVGELIAEMVRKD 348
Query: 394 QPVPPRA----MILSRKYRTLVSSWIEPLQEEAELGYEIDYIA 432
P P A +I S LV +E L++ + GY D ++
Sbjct: 349 CP-PNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVS 390
>gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 810
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 81/180 (45%), Gaps = 8/180 (4%)
Query: 169 NYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
NY R + +++ R+ +++ A +F K + E YD +I +AG A
Sbjct: 138 NYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWA 197
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
+ + +M A + +N+L++ + G A + M ++ + PD T+N V+
Sbjct: 198 MNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMT--DNGVGPDLVTHNIVL 255
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
AY Y + EL+ +++P+ T+ +++ C +K ++A+ F +++
Sbjct: 256 SAYKSGRQYSKALSYFELM-----KGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMR 310
Score = 40.0 bits (92), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 82/209 (39%), Gaps = 15/209 (7%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+A GL P S++ L+ AY ++G A+ L G+ P + L +G
Sbjct: 346 MVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQ 405
Query: 155 ATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
K E+ M K + Y+ L++ N +L +A ++F + + G++
Sbjct: 406 PGKAKEVFLMMRKERRKPNVVTYN------ALIDAYGSNGFLAEAVEIFRQMEQDGIKPN 459
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
++A ++ N + ++ G T +N + E A A ++
Sbjct: 460 VVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQ 519
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESY 296
+M + +K D+ T+ +I R Y
Sbjct: 520 SMR--KKKVKADSVTFTILISGSCRMSKY 546
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 129/330 (39%), Gaps = 45/330 (13%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P +F L+ L+ A+ + R + G +P T + +G
Sbjct: 106 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 165
Query: 155 ATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+L ME KI D+ + +++ L + ++++DA +F G+R Y
Sbjct: 166 IDLAFNLLNKMEAAKIEADV-VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYS 224
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I+ C G S+A ++ +M FN L+ + E F E +
Sbjct: 225 SLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF----VKEGKFVEAEKLH-- 278
Query: 273 EDYMK----PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+D +K PD TYN +I + +DR+ ++ MV K P++ TY L++
Sbjct: 279 DDMIKRSIDPDIFTYNSLINGFCM---HDRLDKAKQMFEFMVS--KDCFPDLDTYNTLIK 333
Query: 329 CFTKYCAVTEAIRHFRALQN---------YEGGTKVLHNEGNF-------------GDP- 365
F K V + FR + + Y + L ++G+ G P
Sbjct: 334 GFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP 393
Query: 366 ----LSLYLRALCREGRIIELLEALEAMAK 391
S+ L LC G++ + LE + M K
Sbjct: 394 DIMTYSILLDGLCNNGKLEKALEVFDYMQK 423
Score = 46.2 bits (108), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ IL++ L N LE A +VF K ++ IY MI CKAG + ++
Sbjct: 396 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 455
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+ G +N ++S + + + A+A + M+ ED PD+ TYN +I+A+ R
Sbjct: 456 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK--EDGPLPDSGTYNTLIRAHLR 512
>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
Length = 853
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 115/285 (40%), Gaps = 42/285 (14%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
+ +++ +M A P +++ ++ AY + A+ + AG P T L
Sbjct: 379 LKELLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLID 438
Query: 148 LFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+ G +++ M+++ + ++V L + L A K+F + G
Sbjct: 439 IHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNCLGKGGQLAAAYKLFCEMIENGCTP 498
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y++MIA KA ++ N +++ +M+ AG ++ ++ CG + A A F
Sbjct: 499 NLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVF 558
Query: 267 ENME---------YG-----------------------EDYMKPDTETYNCVIQAYTRAE 294
M YG +D ++P+ T N ++ A+ +
Sbjct: 559 IEMRRDWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPNVPTCNSLLSAFLKM- 617
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+R QD +L M+ + L P+V+TY LL+ C C V +A
Sbjct: 618 --NRFQDAYIVLQNMLA--RGLVPSVQTYTLLLSC----CTVGQA 654
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 8/216 (3%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDA 192
GV P T L F K L +L M++ + A+ L+ L + K E A
Sbjct: 401 GVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAA 460
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
N++F + ++ +Y +MI K G S A+++ EM+ G + +N L+S
Sbjct: 461 NELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSG 520
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G+ + A + ME E+ PD ++N ++ + R + E+ M
Sbjct: 521 MVRVGMTDEAHSLLRTME--ENGCTPDLNSHNIILNGFARTGG---PKGAIEMFTRM--K 573
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
+ +++P+V +Y ++ C ++ EA + + + +
Sbjct: 574 NSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNS 609
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 21/212 (9%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+ A +F + GL T +IY ++ K G AL + EM+ G T + + L
Sbjct: 247 DSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTEL 306
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G E A++ F NM ++ KPD N +I +A R+ D +L
Sbjct: 307 IKGVGKAGKVEEAYSIFMNML--KEGCKPDVVLINNLINLLGKA---GRLADAIKLF--- 358
Query: 310 VEDHKRLQ--PNVKTYALLVEC-FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL 366
E+ + LQ PNV TY +++ F +EA + ++ E G V+ + +
Sbjct: 359 -EEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMK--ENG--VVPSSFTY---- 409
Query: 367 SLYLRALCREGRIIELLEALEAM-AKDNQPVP 397
S+ + C+ R+ + L LE M K P P
Sbjct: 410 SILIDGFCKTNRVEKALLLLEEMDEKGFAPCP 441
>gi|293333246|ref|NP_001169278.1| uncharacterized protein LOC100383141 [Zea mays]
gi|224028343|gb|ACN33247.1| unknown [Zea mays]
Length = 901
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 120/298 (40%), Gaps = 52/298 (17%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ DM A G+ P +F+ L+ + +G+ A + GV+P +T + +F
Sbjct: 285 DMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASMVIRGVKPDTKTYNVMMTVF 344
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWL--------ILVEELVRNKYLEDANKVFLRGAK 201
S G L + K IR A L IL++ L K + A V K
Sbjct: 345 ASIG-------DLEGVLKYYCQIRNAGLHPDAVTYRILLQVLCERKMVHKAEDVIEGILK 397
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G ++ +++ G A+ +E G+ ++ +F+ ++ A G+ E
Sbjct: 398 AGSFVHEQSLPVVMKMYVDLGLLDEAIAF-FEKHCRGKGVSSKNFSAIMDVFAGRGLWEE 456
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE----------------- 304
A F + E G+ K D YN +I+AY +A+ YDRV + E
Sbjct: 457 AEHIFCS-ERGDGNEK-DIVEYNVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNSL 514
Query: 305 ---------------LLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
LLG M + +P +TY+ ++ ++++C V EAI F ++
Sbjct: 515 IQMFSFGGFPHRAKKLLGKMKD--AGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMK 570
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++I KAG NAL++ +M A G M T+ FN L++ G A F +M
Sbjct: 267 YNVLIDLYGKAGKLKNALDMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASMV 326
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVE 328
+KPDT+TYN ++ + + D+ +L + + L P+ TY +L++
Sbjct: 327 IRG--VKPDTKTYNVMMTVFA------SIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQ 377
Score = 42.7 bits (99), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 54/288 (18%), Positives = 117/288 (40%), Gaps = 42/288 (14%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G+ P ++++ ++ + GD EG + + +AG+ P T L ++ + +
Sbjct: 325 MVIRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQVLCERKM 384
Query: 155 ATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKG------GLRAT 207
K +++ + K + Q+ ++++ V L++A F + +G A
Sbjct: 385 VHKAEDVIEGILKAGSFVHEQSLPVVMKMYVDLGLLDEAIAFFEKHCRGKGVSSKNFSAI 444
Query: 208 DEI----------------------------YDLMIAEDCKAGDHSNALEIAYEMEAAGR 239
++ Y++MI +A + + ME +G
Sbjct: 445 MDVFAGRGLWEEAEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYDRVSSLFESMEESGV 504
Query: 240 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 299
+ +N L+ + G P A M+ + +P ETY+ +I++Y+R + V
Sbjct: 505 PSDECTYNSLIQMFSFGGFPHRAKKLLGKMK--DAGFEPKCETYSAIIRSYSR---HCLV 559
Query: 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ +L M ++PNV Y +L++ F + V EA+ + L+
Sbjct: 560 PEAIDLFNEM--KASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLE 605
>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
Length = 748
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 100/234 (42%), Gaps = 28/234 (11%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
++ Y MI +SP +++ L+ + + L++ + AG+RP ++T +L +
Sbjct: 178 ELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGY 237
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLI--------LVEELVRNKYLEDANKVF----L 197
+ G+ + + + M + LI + L R+ +++A +F L
Sbjct: 238 STAGMWKESVRVFKEMS-------SSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVL 290
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+G K + + + AE C A +S + M + G + FN L++ A CG
Sbjct: 291 KGPKPNIISYSTLLHGYAAEGCFANMNS----LVNLMVSKGIVPNHRFFNILINAYARCG 346
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
+ + A FE+M+ M PDT T+ VI + R R+ D MV+
Sbjct: 347 MMDKAMLIFEDMQ--NKGMIPDTVTFATVISSLCRI---GRLDDALHKFNHMVD 395
>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
Length = 822
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 8/181 (4%)
Query: 169 NYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
NY R + +++ R+ +++ A +F K + E YD +I +AG A
Sbjct: 138 NYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWA 197
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
+ + +M A + +N+L++ + G A + M ++ + PD T+N V+
Sbjct: 198 MNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKMT--DNGVGPDLVTHNIVL 255
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
AY Y + EL+ +++P+ T+ +++ C +K ++A+ F +++
Sbjct: 256 SAYKSGRQYSKALSYFELM-----KGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMR 310
Query: 348 N 348
+
Sbjct: 311 D 311
Score = 40.4 bits (93), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 81/209 (38%), Gaps = 15/209 (7%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+A GL P S++ L+ AY ++G E A+ G+ P + +L +G
Sbjct: 346 MLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSLLNSYGRSRQ 405
Query: 155 ATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
K E+ M K + Y+ L++ N +L +A ++F + + G +
Sbjct: 406 PGKAKEVFLMMRKERRKPNVVTYN------ALIDAYGSNGFLAEAVEIFRQMEQDGTKPN 459
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
++A ++ N + ++ G T +N + E A A ++
Sbjct: 460 VVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQ 519
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESY 296
M + +K D+ T+ +I R Y
Sbjct: 520 TMR--KKKVKADSVTFTILISGSCRMSKY 546
>gi|168038568|ref|XP_001771772.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676903|gb|EDQ63380.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 614
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 44/268 (16%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+V ++ M+AAG+ P +F ++ + G + A+ + +AGV P T L
Sbjct: 317 KVLEIYRTMVAAGVPPDQFTFSFILESAAAGGRLKVALEVFEEMRAAGVAPKTNTFNFL- 375
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
I A D +AW L EE+ K +E G+
Sbjct: 376 --------------IEACASAPYPDAEKAW-ALFEEM---KTIE------------GVVP 405
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEM---EAAGRMATTFHFNHLLSCQATCGIPEVAF 263
+ Y+ +I CK GD++ AL+ AYE+ R TT FN L+ + E A
Sbjct: 406 NAQTYNHLITASCKGGDNARALK-AYELMWNSGYQRAVTTATFNKLIQSASQTEGLESAL 464
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA-ELLGMMVEDHKRLQPNVKT 322
+ M + KPD TY+ ++ A RA+ ++ ++ E+ G+ V+ ++ +Q +
Sbjct: 465 KMYRKML--DAGYKPDAITYSTLVVACNRADDLEQALSISQEMEGLGVKPNQVVQHS--- 519
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYE 350
L+ + + +A+ FR LQ E
Sbjct: 520 ---LIAAYGQAGQWEDAVATFRVLQEGE 544
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 122/302 (40%), Gaps = 26/302 (8%)
Query: 61 VSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDH 120
V+AA +G L + R ++ R + M AG+ P +++ L+
Sbjct: 179 VNAANEGTYLALITVCR---RQQEGDRALSIYEAMKDAGVIPSVLTYNTLISCCQQAKRL 235
Query: 121 EGAMHSLKRELSA-GVRPLHETLIALARLFGSKG----------LATKGLEILAAMEKIN 169
E A + +K E+ A GV+P T AL L G K L++ M+ N
Sbjct: 236 EDA-YRIKAEMEASGVKPDVVTYTALMALVVKTGPYRGRSSPAQRLEKALQLYQEMQDRN 294
Query: 170 YDIRQ---AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSN 226
IR + L+ + K E +++ G+ + ++ G
Sbjct: 295 --IRPDSITYNTLMFAGAQAKVPEKVLEIYRTMVAAGVPPDQFTFSFILESAAAGGRLKV 352
Query: 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP--EVAFATFENMEYGEDYMKPDTETYN 284
ALE+ EM AAG T FN L+ A+ P E A+A FE M+ E + P+ +TYN
Sbjct: 353 ALEVFEEMRAAGVAPKTNTFNFLIEACASAPYPDAEKAWALFEEMKTIEGVV-PNAQTYN 411
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 344
+I A + R EL M ++R T+ L++ ++ + A++ +R
Sbjct: 412 HLITASCKGGDNARALKAYEL--MWNSGYQR-AVTTATFNKLIQSASQTEGLESALKMYR 468
Query: 345 AL 346
+
Sbjct: 469 KM 470
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
LE A +++ +R Y+ ++ +A LEI M AAG F F+
Sbjct: 280 LEKALQLYQEMQDRNIRPDSITYNTLMFAGAQAKVPEKVLEIYRTMVAAGVPPDQFTFSF 339
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
+L A G +VA FE M + P T T+N +I+A A D AE
Sbjct: 340 ILESAAAGGRLKVALEVFEEMRAAG--VAPKTNTFNFLIEACASAPYPD-----AEKAWA 392
Query: 309 MVEDHKRLQ---PNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
+ E+ K ++ PN +TY L+ T C + + RAL+ YE
Sbjct: 393 LFEEMKTIEGVVPNAQTYNHLI---TASCKGGD---NARALKAYE 431
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 113/547 (20%), Positives = 202/547 (36%), Gaps = 67/547 (12%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM+ G P ++ L+ A + AM L + G P T + +G
Sbjct: 201 DMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 260
Query: 154 LATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
E L + + ++ +++ L K ED ++F + + +D
Sbjct: 261 RVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 320
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EY 271
+++ C+ G A+++ +M G A T N +++ G + AF NM Y
Sbjct: 321 MLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY 380
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
G PDT +Y V++ RAE R +D ELL MV K PN T+ +
Sbjct: 381 G---CSPDTISYTTVLKGLCRAE---RWEDAKELLKEMV--RKNCPPNEVTFNTFICILC 432
Query: 332 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391
+ + +A + + ++ + C +GR+ LE +M
Sbjct: 433 QKGLIEQATMLIEQMSEHGCEVNIVTYNA--------LVNGFCVQGRVDSALELFYSM-- 482
Query: 392 DNQPVPPRAMILSRKYRTLVSSWI--EPLQEEAELGYEI------------DYIARYISE 437
P P + Y TL++ E L AEL E+ + + + +
Sbjct: 483 ---PCKPNTI----TYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQ 535
Query: 438 GGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG- 496
GL E V + + P+ + + N + + C + +LL L + G
Sbjct: 536 KGLMDEAIELVEQMMEHGCTPNLITY---NTLLDGITKDC---NSEEALELLHGLVSNGV 589
Query: 497 -------PAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAA--SKMVVSELKEELDAQ 547
+++G +S D RVEE + K+ + ++PKA +K++++ K
Sbjct: 590 SPDIVTYSSIIGVLSRED--RVEEAI-KMFHIVQDLGMRPKAVIYNKILLALCKR----- 641
Query: 548 GLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEE-EEEVDEEVDELISRIKLEEGNT 606
TDG + V N L E+ +E + + EL SR L +
Sbjct: 642 -CNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVLNKNLL 700
Query: 607 EFWKRRF 613
E W+ +F
Sbjct: 701 EEWRPKF 707
>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
Length = 528
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 115/281 (40%), Gaps = 17/281 (6%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M G++P ++ LV AYT G E A LK + GV+P + F
Sbjct: 181 VLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFR 240
Query: 151 SKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G K +L M + D R + ++++ + L A F R + G+
Sbjct: 241 DRGEWQKAFAVLREMHASGVRPD-RHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDV 299
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
++ +I CK G H A+E+ EM + T +N +++ E + E
Sbjct: 300 VTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLG----EEQRWEGVEA 355
Query: 269 M--EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
M E E + P+ TY ++ Y R+ + D E + L+P+ Y L
Sbjct: 356 MLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAM-----KADGLKPSSTMYHAL 410
Query: 327 VECFTKYCAVTEAIRHFRALQ--NYEGGTKVLHNEGN-FGD 364
V + + A+ +A++ E T VL++ N FG+
Sbjct: 411 VNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGE 451
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 19/255 (7%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG- 158
L P F L+ A+ + A+ L + G+ P + AL GS +
Sbjct: 84 LEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAE 143
Query: 159 ---LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
LE A E I R A+ L++ V+ L++A +V ++ G+ + Y L++
Sbjct: 144 ALFLEFFLAGE-IKPRTR-AYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 201
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY 275
+AG +A + EMEA G +++ F+ +L+ G + AFA M
Sbjct: 202 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMH--ASG 259
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
++PD YN +I + + Y+ + + M E+ ++P+V T+ L++ K
Sbjct: 260 VRPDRHFYNVMIDTFGK---YNCLGHAMDAFDRMREEG--IEPDVVTWNTLIDAHCK--- 311
Query: 336 VTEAIRHFRALQNYE 350
RH RA++ ++
Sbjct: 312 ---GGRHDRAIELFD 323
Score = 39.7 bits (91), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GL+ + +Y ++ + G +AL + M A G A+T N L++ A
Sbjct: 399 GLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEA 458
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
F+ + M+ E+ ++PD TY +++A R E +++V + E
Sbjct: 459 FSVLQFMK--ENGLRPDVITYTTLMKALIRVEQFEKVPVIYE 498
>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 654
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 106/267 (39%), Gaps = 37/267 (13%)
Query: 85 APRVND---VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET 141
A RV+D ++++M AGL ++ L+ + GD A L+ +S+GV P T
Sbjct: 374 AKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVT 433
Query: 142 LIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
L G LE+ AM+K DI DA+ F
Sbjct: 434 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDI------------------DASHPF----- 470
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G+ + Y+++I+ G A E+ EM G + T +N ++ C +
Sbjct: 471 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVI--HGLCKQSRL 528
Query: 262 AFAT--FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
AT F++M G P+ T+ +I Y +A RV D EL M + + N
Sbjct: 529 DEATQMFDSM--GSKSFSPNVVTFTTLINGYCKA---GRVDDGLELFCEM--GRRGIVAN 581
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRAL 346
TY L+ F K + A+ F+ +
Sbjct: 582 AITYITLIHGFRKVGNINGALDIFQEM 608
>gi|414878622|tpg|DAA55753.1| TPA: hypothetical protein ZEAMMB73_281441 [Zea mays]
Length = 573
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 40/241 (16%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ +Y++ + CK G+ + A+++ EM A + H+ L++ G E A
Sbjct: 151 GVHLDGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENA 210
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ FE M +KPD TYN + Y+R +V D+ E MM + L+PN T
Sbjct: 211 WQVFEEMLKAN--IKPDVVTYNILASGYSRNGLVMKVFDILE--HMM---DQGLEPNSLT 263
Query: 323 YALLVECFTKYCAVTEAIRHFRALQ-------NYEGGTKV---LHN-------------- 358
Y + + F + ++EA F ++ N G+ V LH+
Sbjct: 264 YGIAIAGFCRGGNLSEAEVLFNIVEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFLRVA 323
Query: 359 -EGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
+GN D LS + LCR+ ++ E + M + N V P + Y L+S++
Sbjct: 324 KQGNMVDRLSCSKLINGLCRDEKVGEASTVCKMMLEKN--VVPDVI----SYSKLISAYC 377
Query: 416 E 416
+
Sbjct: 378 Q 378
>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 112/259 (43%), Gaps = 10/259 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ DM++ + P +F+ L+ + G + A K ++ G+ P T L +
Sbjct: 275 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 334
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+ ++ +L M K + DI + L++ K ++D KVF +K GL A
Sbjct: 335 MQNRLSEANNMLDLMVRNKCSPDI-VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANA 393
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y +++ C++G A E+ EM + G + + LL G E A FE+
Sbjct: 394 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 453
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
++ + M Y +I+ + +V+D L + K ++PNV TY +++
Sbjct: 454 LQ--KSKMDLGIVMYTTIIEGMCKG---GKVEDAWNLFCSL--PCKGVKPNVMTYTVMIS 506
Query: 329 CFTKYCAVTEAIRHFRALQ 347
K +++EA R ++
Sbjct: 507 GLCKKGSLSEANILLRKME 525
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ ++ C++GD S AL++ +ME A F ++ ++ G + A + F+ ME
Sbjct: 186 YNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEME 245
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+K TYN +++ +A ++ D A LL MV + + PNV T+ +L++ F
Sbjct: 246 --TKGIKSSVVTYNSLVRGLCKAGKWN---DGALLLKDMVS--REIVPNVITFNVLLDVF 298
Query: 331 TKYCAVTEA 339
K + EA
Sbjct: 299 VKEGKLQEA 307
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 4/168 (2%)
Query: 87 RVND---VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
RV+D V ++ GL ++ LV + +G + A + +S GV P T
Sbjct: 373 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 432
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKG 202
L G K LEI ++K D+ + ++E + + +EDA +F
Sbjct: 433 ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 492
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
G++ Y +MI+ CK G S A + +ME G +N L+
Sbjct: 493 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLI 540
>gi|42565284|ref|NP_189575.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75146586|sp|Q84J46.1|PP262_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g29290; AltName: Full=Protein EMBRYO DEFECTIVE 2076
gi|28393331|gb|AAO42091.1| unknown protein [Arabidopsis thaliana]
gi|28827658|gb|AAO50673.1| unknown protein [Arabidopsis thaliana]
gi|332644042|gb|AEE77563.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 540
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 108/239 (45%), Gaps = 20/239 (8%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV +M+ +S + + ++ A T + A+ + L G++P L+A L
Sbjct: 270 DVYDEMVNNKISLREDAMYAMISACTKEEKWDLALKIFQSMLKKGMKP---NLVACNTLI 326
Query: 150 GSKGLATK-GL--EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
S G A K GL ++ + ++ + + + W L+ L + ED ++F L
Sbjct: 327 NSLGKAGKVGLVFKVYSVLKSLGHKPDEYTWNALLTALYKANRYEDVLQLFDMIRSENLC 386
Query: 206 ATDE-IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+E +Y+ + K G A+++ YEME +G +T +N ++S +VA
Sbjct: 387 CLNEYLYNTAMVSCQKLGYWEKAVKLLYEMEGSGLTVSTSSYNLVISACEKSRKSKVALL 446
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+E+M + KP+T TY ++++ +D V+D+ K+++P+V Y
Sbjct: 447 VYEHM--AQRDCKPNTFTYLSLVRSCIWGSLWDEVEDIL----------KKVEPDVSLY 493
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 41/253 (16%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ DV+ DM A G SP +++ ++ Y G A LK ++ + P
Sbjct: 247 KAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHP--------- 297
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+I ++ IL++ R++ + A KVF + GL+
Sbjct: 298 -------------------NEITFN------ILIDGFCRDENVTAAKKVFEEMQRQGLQP 332
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y+ +I C G AL + +M G +N L++ + + A
Sbjct: 333 NVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREML 392
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+++ G+ + P+ T+N +I AY +A R+ D L MM++ + PNV TY L
Sbjct: 393 DDI--GKRGLAPNVITFNTLIDAYGKA---GRMDDAFLLRSMMLDTG--VCPNVSTYNCL 445
Query: 327 VECFTKYCAVTEA 339
+ F + V EA
Sbjct: 446 IVGFCREGNVKEA 458
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 107/269 (39%), Gaps = 20/269 (7%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R+ + V +M GL P +++ L+ NG + A+ + G++P
Sbjct: 310 CRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNV 369
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDA 192
T AL F K + + E+L + K I ++ L++ + ++DA
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN------TLIDAYGKAGRMDDA 423
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
+ G+ Y+ +I C+ G+ A ++A EME G A +N L+
Sbjct: 424 FLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILV-- 481
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
A C E A E E + P TYN +I Y R + +V L+ +
Sbjct: 482 DALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLM-----E 536
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIR 341
K + N+ TY +L++ F + EA R
Sbjct: 537 KKGRRANIVTYNVLIKGFCNKGKLEEANR 565
>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
Length = 602
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 19/229 (8%)
Query: 152 KGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
KGL + +++L M K + ++ L + ++ A + + G +
Sbjct: 320 KGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVT 379
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ ++ C A +A E+ M G + FN L+ G+ A F+ M
Sbjct: 380 YNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMP 439
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+ P++ TY+ +I +A D+ ++ +G HK P+ K Y LL EC
Sbjct: 440 --DKGCTPNSITYSTIISGLAKATKLDQALELFNEMG-----HKGFNPD-KIYQLLAECL 491
Query: 331 TKYCAVTEAIRHFRALQNYE-GGTKVLHNEGNFGDPLSLYLRALCREGR 378
+ EAI+ R LQ+ VL+N L LCR G+
Sbjct: 492 NDDDTIEEAIQTVRKLQDSGISPHTVLYNA---------ILLGLCRNGK 531
>gi|449499684|ref|XP_004160885.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Cucumis sativus]
Length = 693
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 136/330 (41%), Gaps = 36/330 (10%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ M+++ LSP + L A NG E LK L G+ P H + L +++
Sbjct: 349 ILNSMVSSNLSPSVHCYTVLSSALYRNGRLEEVDGLLKGMLDNGIIPDHVLFLTLMKMYP 408
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG-AKGGLRATDE 209
L IL + K + ++ E + LE ++ L+ + L
Sbjct: 409 KGHELQLALNILETIVKNGCGCDPSVILASAEWQTSSNLEQKFEIVLKEISISDLNLAGV 468
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ ++I+ C+ + AL+ + M + G F +N L+ + E A + ++M
Sbjct: 469 AFSIVISALCETENFCYALDYLHNMVSLGCKPLLFTYNSLIRRLCKERLFEDAMSLIDHM 528
Query: 270 EYGEDY-MKPDTETYNCVIQAYTR----AESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
+DY + P+T TY ++ Y R +Y ++ + ++ L+P+V Y
Sbjct: 529 ---KDYSLFPNTTTYLIIVNEYCRQGNVTAAYHTLRKMRQV---------GLKPSVAIYD 576
Query: 325 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP-LSLYL---RALCREGRII 380
++ C ++ + EA F+ + E G DP YL + + GRI+
Sbjct: 577 SIIRCLSREKRICEAEVVFKMM--LEAGM----------DPDKKFYLTMIKGYSKNGRIL 624
Query: 381 ELLEALEAMAKDNQPVPPRAMILSRKYRTL 410
E E E M +++ +PP + I + R L
Sbjct: 625 EACELFEQMVENS--IPPSSHIYTALIRGL 652
>gi|388500892|gb|AFK38512.1| unknown [Medicago truncatula]
Length = 249
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 100/239 (41%), Gaps = 47/239 (19%)
Query: 98 AGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK 157
+ P R+++ L+ A+ + E A + + + +++G++P T LAR F G
Sbjct: 11 GNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDN 70
Query: 158 GLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
++ M++ N ++ E + +RG
Sbjct: 71 AERLILKMQQYNNKVKPN--------------ERTCGIIIRGY----------------- 99
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHL----LSCQATCGIPEVAFATFENMEYGE 273
CK G+ + AL Y+M+ G FN L L T G+ E A E E+G
Sbjct: 100 -CKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEE-ALTLME--EFG- 154
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+KPD TY+ ++ A++ + D + E+ MV+ ++P+++ Y++L + + +
Sbjct: 155 --IKPDVVTYSTIMNAWSSSGLMDNCE---EIFDDMVK--AEIEPDIQAYSILAKGYVR 206
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
+KP+ TYN +IQA+ + + +++ ++ MV + +QP++ TY L F +
Sbjct: 13 VKPNERTYNILIQAWC---TKNELEEAWNVMHKMV--NSGMQPDIVTYNTLARAFAQNGE 67
Query: 336 VTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
A R +Q Y KV NE G + +R C+EG + E L L M
Sbjct: 68 TDNAERLILKMQQYN--NKVKPNERTCG----IIIRGYCKEGNMTEALRFLYKM 115
Score = 40.4 bits (93), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
+Y M G+ P P F+ L+ Y D +G +L G++P T + + S
Sbjct: 112 LYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSS 171
Query: 152 KGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
GL EI M K I DI QA+ IL + VR + A + K GL+A
Sbjct: 172 SGLMDNCEEIFDDMVKAEIEPDI-QAYSILAKGYVRAGQPDKAEALLNSMTKYGLQANVV 230
Query: 210 IYDLMIA 216
I+ +I+
Sbjct: 231 IFTTIIS 237
>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 123/308 (39%), Gaps = 31/308 (10%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M++ GL P +++ +V G + A L R G T L R ++G
Sbjct: 241 EMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEG 300
Query: 154 LATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
G ++++ M I Y L+ L R+ +++A V + L
Sbjct: 301 KWEYGEKLMSDMLVKGCEPNPITYST------LITALCRDGKIDEAKNVLKVMKEKALAP 354
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
YD +I+ C+ G A+E +M + G + +N +L+ G + A F
Sbjct: 355 DGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIF 414
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
E + GE P+ +YN + A S D+++ + +L M+ + P+ TY L
Sbjct: 415 EKL--GEVGCPPNAGSYNTLFGAL--WSSGDKIRALGMILEML---SNGIDPDEITYNSL 467
Query: 327 VECFTKYCAVTEAIRHFRALQNYEGG--TKVLHNEGNFGDPLSLYLRALCREGRIIELLE 384
+ C + V +AI + E T + +N L LC+ RII+ +E
Sbjct: 468 ISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNT---------VLLGLCKVQRIIDAIE 518
Query: 385 ALEAMAKD 392
L AM +
Sbjct: 519 VLAAMVNE 526
Score = 40.0 bits (92), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 94/249 (37%), Gaps = 37/249 (14%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ IL+E + +++A K+ GLR Y++++ CK G A E +
Sbjct: 218 TYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRI 277
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM--------KPDTETYNCV 286
G +A +N LL G EYGE M +P+ TY+ +
Sbjct: 278 SKNGCVAGVSTYNILLRDLLNEG----------KWEYGEKLMSDMLVKGCEPNPITYSTL 327
Query: 287 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
I A R D ++V + V K L P+ +Y L+ + V AI L
Sbjct: 328 ITALCRDGKIDEAKNV-----LKVMKEKALAPDGYSYDPLISALCREGKVDLAIEF---L 379
Query: 347 QNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILS 404
+ G G+ D LS L +LC+ G E L E + + PP A +
Sbjct: 380 DDMISG-------GHLPDILSYNSILASLCKNGNADEALNIFEKLGE--VGCPPNAGSYN 430
Query: 405 RKYRTLVSS 413
+ L SS
Sbjct: 431 TLFGALWSS 439
>gi|222626074|gb|EEE60206.1| hypothetical protein OsJ_13175 [Oryza sativa Japonica Group]
Length = 789
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 110/260 (42%), Gaps = 12/260 (4%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
RV ++ +M A G +P P ++ GL+ A+TL G A+ L++ + G P T L
Sbjct: 105 RVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLL 164
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
L+G +G E+ M + +L + ++ ++F +
Sbjct: 165 DLYGRQGRFDGVRELFREMRTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEP 224
Query: 207 -TDEIYDLMIAEDC-KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
D ++M+A C + G H +A E+ + G + T + L+ + E A+
Sbjct: 225 DIDTCENVMVA--CGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYV 282
Query: 265 TFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
F M E G P ETYN + A+ + + AE + + ++ +Q + ++
Sbjct: 283 AFNMMTEIGS---LPTIETYNALANAFAKGGLFQE----AEAIFSRMTNNAAIQKDKDSF 335
Query: 324 ALLVECFTKYCAVTEAIRHF 343
L+E + + + +A++ +
Sbjct: 336 DALIEAYCQGAQLDDAVKAY 355
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 113/547 (20%), Positives = 202/547 (36%), Gaps = 67/547 (12%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM+ G P ++ L+ A + AM L + G P T + +G
Sbjct: 170 DMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 229
Query: 154 LATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
E L + + ++ +++ L K ED ++F + + +D
Sbjct: 230 RVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 289
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EY 271
+++ C+ G A+++ +M G A T N +++ G + AF NM Y
Sbjct: 290 MLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY 349
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
G PDT +Y V++ RAE R +D ELL MV K PN T+ +
Sbjct: 350 G---CSPDTISYTTVLKGLCRAE---RWEDAKELLKEMV--RKNCPPNEVTFNTFICILC 401
Query: 332 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391
+ + +A + + ++ + C +GR+ LE +M
Sbjct: 402 QKGLIEQATMLIEQMSEHGCEVNIVTYNA--------LVNGFCVQGRVDSALELFYSM-- 451
Query: 392 DNQPVPPRAMILSRKYRTLVSSWI--EPLQEEAELGYEI------------DYIARYISE 437
P P + Y TL++ E L AEL E+ + + + +
Sbjct: 452 ---PCKPNTI----TYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQ 504
Query: 438 GGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG- 496
GL E V + + P+ + + N + + C + +LL L + G
Sbjct: 505 KGLMDEAIELVEQMMEHGCTPNLITY---NTLLDGITKDC---NSEEALELLHGLVSNGV 558
Query: 497 -------PAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAA--SKMVVSELKEELDAQ 547
+++G +S D RVEE + K+ + ++PKA +K++++ K
Sbjct: 559 SPDIVTYSSIIGVLSRED--RVEEAI-KMFHIVQDLGMRPKAVIYNKILLALCKR----- 610
Query: 548 GLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEE-EEEVDEEVDELISRIKLEEGNT 606
TDG + V N L E+ +E + + EL SR L +
Sbjct: 611 -CNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVLNKNLL 669
Query: 607 EFWKRRF 613
E W+ +F
Sbjct: 670 EEWRPKF 676
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 18/257 (7%)
Query: 82 NRDAPRVN---DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
N+ A R+ + +M A+G+ P S+H L+ A + +G A H+L ++ P
Sbjct: 151 NKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEA-HALFSAMTC--SPD 207
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFL 197
T L + G + ++ + K Y+ + I++ + +E+A +VF+
Sbjct: 208 IMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFM 267
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS--CQAT 255
+ + ++ +IA CKAG +A+++ EME G AT +N L+ C+
Sbjct: 268 KMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKR 327
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G+ A F +E + P TYN +IQ + A + ++E + E +
Sbjct: 328 GGV-YTAVDLFNKLEGAG--LTPTIVTYNSLIQGFCDA------RRLSEAMQYFDEMEGK 378
Query: 316 LQPNVKTYALLVECFTK 332
PNV TY++L++ K
Sbjct: 379 CAPNVITYSILIDGLCK 395
Score = 46.6 bits (109), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 14/154 (9%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ IL++ L + + +++A K G T Y +I CK G+ +AL +M+
Sbjct: 386 YSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMK 445
Query: 236 AAGRMATTFHFNHLLS--CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
AG T FN L+ C+A + + E KPD TYNC+I A
Sbjct: 446 LAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEG----CKPDVITYNCLISGLCSA 501
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
+RV+D L D PNV T+ L+
Sbjct: 502 ---NRVEDAQRLF-----DGMACAPNVTTFNFLI 527
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 131/332 (39%), Gaps = 32/332 (9%)
Query: 92 IYDMIAAGL-SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ + AGL +P +++ L+ + G A+ S+G+ P T+ L
Sbjct: 19 LFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLC 78
Query: 151 SKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G + L++ M+ + + IL+ + DA K
Sbjct: 79 EIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATG 138
Query: 210 IYDLMIAEDCKAGDHSN----ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y+L++ C +N A+E EM+A+G ++ LLS + G A A
Sbjct: 139 TYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHAL 198
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTR-AESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
F M PD TYN ++ Y + ++Y+ + E+L +PNV TY+
Sbjct: 199 FSAMT-----CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEIL------KAGYEPNVFTYS 247
Query: 325 LLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLE 384
+++ C+ K V EA F + + + N F ++ C+ G + + ++
Sbjct: 248 IIINCYCKLDKVEEAWEVFMKMIE----SNCVPNAVTFNTLIA----GFCKAGMLEDAIK 299
Query: 385 ALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
M K + +A I++ Y TL+ S +
Sbjct: 300 LFAEMEK----IGCKATIVT--YNTLIDSLCK 325
>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 484
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 9/175 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
W+++++ + ++++ K+F + + G+ T + YD + + G A +M
Sbjct: 83 WVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRFMMAKRYFNKML 142
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+ G T FN ++ G E A FE+M+ E + PD TYN +I Y R +
Sbjct: 143 SEGIEPTRHXFNVMIWGFFLSGKVETANRFFEDMKSRE--ISPDVITYNTMINGYYRVKK 200
Query: 296 YDRVQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
D + E+ G + ++P V TY L++ + V +A+R ++ Y
Sbjct: 201 MDEAEKYFVEMKG------RNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGY 249
>gi|414886512|tpg|DAA62526.1| TPA: hypothetical protein ZEAMMB73_338715 [Zea mays]
Length = 901
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 120/298 (40%), Gaps = 52/298 (17%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ DM A G+ P +F+ L+ + +G+ A + GV+P +T + +F
Sbjct: 285 DMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASMVIRGVKPDTKTYNVMMTVF 344
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWL--------ILVEELVRNKYLEDANKVFLRGAK 201
S G L + K IR A L IL++ L K + A V K
Sbjct: 345 ASIG-------DLEGVLKYYCQIRNAGLHPDAVTYRILLQVLCERKMVHKAEDVIEGILK 397
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G ++ +++ G A+ +E G+ ++ +F+ ++ A G+ E
Sbjct: 398 AGSFVHEQSLPVVMKMYVDLGLLDEAIAF-FEKHCRGKGVSSKNFSAIMDVFAGRGLWEE 456
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE----------------- 304
A F + E G+ K D YN +I+AY +A+ YDRV + E
Sbjct: 457 AEHIFCS-ERGDGNEK-DIVEYNVMIKAYGQAKQYDRVSSLFESMEESGVPSDECTYNSL 514
Query: 305 ---------------LLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
LLG M + +P +TY+ ++ ++++C V EAI F ++
Sbjct: 515 IQMFSFGGFPHRAKKLLGKMKD--AGFEPKCETYSAIIRSYSRHCLVPEAIDLFNEMK 570
Score = 43.9 bits (102), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++I KAG NAL++ +M A G M T+ FN L++ G A F +M
Sbjct: 267 YNVLIDLYGKAGKLKNALDMFLDMPAHGVMPDTYTFNTLINIFGFSGNSAQAEVLFASMV 326
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVE 328
+KPDT+TYN ++ + + D+ +L + + L P+ TY +L++
Sbjct: 327 IRG--VKPDTKTYNVMMTVFA------SIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQ 377
Score = 42.7 bits (99), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 54/288 (18%), Positives = 117/288 (40%), Gaps = 42/288 (14%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G+ P ++++ ++ + GD EG + + +AG+ P T L ++ + +
Sbjct: 325 MVIRGVKPDTKTYNVMMTVFASIGDLEGVLKYYCQIRNAGLHPDAVTYRILLQVLCERKM 384
Query: 155 ATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKG------GLRAT 207
K +++ + K + Q+ ++++ V L++A F + +G A
Sbjct: 385 VHKAEDVIEGILKAGSFVHEQSLPVVMKMYVDLGLLDEAIAFFEKHCRGKGVSSKNFSAI 444
Query: 208 DEI----------------------------YDLMIAEDCKAGDHSNALEIAYEMEAAGR 239
++ Y++MI +A + + ME +G
Sbjct: 445 MDVFAGRGLWEEAEHIFCSERGDGNEKDIVEYNVMIKAYGQAKQYDRVSSLFESMEESGV 504
Query: 240 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 299
+ +N L+ + G P A M+ + +P ETY+ +I++Y+R + V
Sbjct: 505 PSDECTYNSLIQMFSFGGFPHRAKKLLGKMK--DAGFEPKCETYSAIIRSYSR---HCLV 559
Query: 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ +L M ++PNV Y +L++ F + V EA+ + L+
Sbjct: 560 PEAIDLFNEM--KASGVEPNVIVYGILIDMFAETGNVKEALHYSNLLE 605
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 20/260 (7%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
++R + ++ +M A L P + L+ + G+ + A +K ++AGV+P
Sbjct: 303 CKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNK 362
Query: 140 ETLIALARLFGSKGLATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDA 192
T L R G + +L M + I Y++ ++E R+ +DA
Sbjct: 363 ITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNL------IIEGHFRHHSKKDA 416
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
++ G+ Y +MI C++G+ A ++ EM G F + L+S
Sbjct: 417 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 476
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G +A F+ M + + PD YN +I ++ RV++ + M E
Sbjct: 477 YCREGNVSLACEIFDKMT--KVNVLPDLYCYNSLIFGLSKV---GRVEESTKYFAQMQE- 530
Query: 313 HKRLQPNVKTYALLVECFTK 332
+ L PN TY+ L+ + K
Sbjct: 531 -RGLLPNEFTYSGLIHGYLK 549
Score = 46.2 bits (108), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 134/340 (39%), Gaps = 23/340 (6%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+++ L + ++ D +V+ M+ G+ R + L+ + +G+ E A L
Sbjct: 573 VIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSG 632
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKY 188
G P +L K IL M K D + L++ L ++
Sbjct: 633 IEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGD 692
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+ A VF GL Y +I CK GD SNA + EM A G F ++
Sbjct: 693 ISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSV 752
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMK--PDTETYNCVIQAYTRAESYDRVQDVAELL 306
L + ++ G E A E M +++ ++N ++ + + ++Q+ +LL
Sbjct: 753 LTTGCSSAGDLEQAMFLIEEM-----FLRGHASISSFNNLVDGFCKR---GKMQETLKLL 804
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD-- 364
+++ + L PN T ++ ++ ++E F LQ + H F D
Sbjct: 805 HVIMG--RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMI 862
Query: 365 -----PLSL---YLRALCREGRIIELLEALEAMAKDNQPV 396
PL + +R C+EG + + L + + + P+
Sbjct: 863 NQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPM 902
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 56/280 (20%), Positives = 109/280 (38%), Gaps = 46/280 (16%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP--------------------- 137
GL P ++ GL+ Y NGD E A ++R L G++P
Sbjct: 532 GLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKV 591
Query: 138 -------LHETLIALARLFG-------SKGLATKGLEILAAMEKINYDI--RQAWLILVE 181
L + ++ R++G S G +L+ +EK N + + L+
Sbjct: 592 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEK-NGSVPDVHVYSSLIS 650
Query: 182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA 241
L + E A + +K G+ Y+ +I CK+GD S A + + A G +
Sbjct: 651 GLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVP 710
Query: 242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
+ L+ +C + +++ A + E + PD Y+ + + A D
Sbjct: 711 NCVTYTSLI--DGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSA------GD 762
Query: 302 VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
+ + + ++ E R ++ ++ LV+ F K + E ++
Sbjct: 763 LEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLK 802
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 17/177 (9%)
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME-YGEDYMK 277
CK + A ++ EM G T +N L++ G E AF ++ME YG +
Sbjct: 233 CKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYG---LV 289
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
PD TY +I ++ R + LL M L+PNV YA L++ F +
Sbjct: 290 PDGFTYGALINGLCKSR---RSNEAKALLDEM--SCAELKPNVVVYANLIDGFMREGNAD 344
Query: 338 EAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 394
EA + + + V N+ + + +R LC+ G++ L+ M +D+
Sbjct: 345 EAFKMIKEMV----AAGVQPNKITYDN----LVRGLCKMGQMDRASLLLKQMVRDSH 393
>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 592
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 6/207 (2%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
+A RV ++ M++ G P ++ L+ + + AMH L + G P T
Sbjct: 339 EATRVFEL---MVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWT 395
Query: 144 ALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
L F G E+ M K Q I+++ L +++ L +A +F K
Sbjct: 396 TLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKS 455
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
L IY +++ C AG + ALE+ + A G + + +++ A G+ + A
Sbjct: 456 NLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKA 515
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQA 289
NME E+ PD+ TYN +Q
Sbjct: 516 EDLLSNME--ENGCMPDSCTYNVFVQG 540
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 11/241 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS-AGVRPLHETLIALARL 148
DV+ M P ++ L+ A++ +H M +L +++ G P L R
Sbjct: 154 DVVQMMRKFKFRPAFSAYTTLIGAFSAV-NHSDMMLTLFQQMQELGYEPTVHLFTTLIRG 212
Query: 149 FGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
F +G L +L M+ + D + + ++ + ++ A K F GL+
Sbjct: 213 FAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPD 272
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
+ Y MI CKA A+E+ +E R+ T+ +N ++ + G + A++ E
Sbjct: 273 EVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
P YNC++ + D V E E K PN+ TY +L+
Sbjct: 333 RQRAKGSI--PSVIAYNCILTCLRKMGKVDEALKVFE------EMKKDAAPNLSTYNILI 384
Query: 328 E 328
+
Sbjct: 385 D 385
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 84/434 (19%), Positives = 158/434 (36%), Gaps = 35/434 (8%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L+ AR R+ ++ ++ +M AG P + +V+ ++
Sbjct: 105 LLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKF 164
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANK 194
RP L F + + L + M+++ Y+ + L+ + ++ A
Sbjct: 165 RPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALS 224
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+ L A +Y++ I K G A + +E+EA G + ++
Sbjct: 225 LLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLC 284
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
+ A FE++E ++ P T YN +I Y A +D + E + K
Sbjct: 285 KANRLDEAVEMFEHLE--KNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER-----QRAK 337
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 374
P+V Y ++ C K V EA++ F ++ +N + + LC
Sbjct: 338 GSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYN---------ILIDMLC 388
Query: 375 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDY---- 430
R G++ E ++M K + P ++ L S + L E + E+DY
Sbjct: 389 RAGKLDTAFELRDSMQK--AGLFPNVRTVNIMVDRLCKS--QKLDEACAMFEEMDYKVCT 444
Query: 431 -----IARYISEGGLTGERKRWVPRRGKTPLDPDA--VGFIYSNPMETSFKQRCLEDGKK 483
I G G R + + LD D +Y++ ++ F EDG K
Sbjct: 445 PDEITFCSLIDGLGKVG-RVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHK 503
Query: 484 YHRKLLRTLQNEGP 497
++ ++ QN P
Sbjct: 504 IYKDMIN--QNCSP 515
Score = 40.8 bits (94), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 111/267 (41%), Gaps = 25/267 (9%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+++ IL+ L++ + + ++F + G Y+++I CK G + A ++ E
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE 612
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+ G T + ++ A + A+ FE E ++ + Y+ +I + +
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFE--EAKSKRIELNVVIYSSLIDGFGKV 670
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
D + E L K L PN+ T+ L++ K + EA+ F++++
Sbjct: 671 GRIDEAYLILEELM-----QKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKE----L 721
Query: 354 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSS 413
K N+ +G + + LC+ + + + M K Q + P + Y T++S
Sbjct: 722 KCTPNQVTYG----ILINGLCKVRKFNKAFVFWQEMQK--QGMKPSTI----SYTTMISG 771
Query: 414 WIEPLQEEAELGYEIDYIARYISEGGL 440
+ AE G D R+ + GG+
Sbjct: 772 -LAKAGNIAEAGALFD---RFKANGGV 794
>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 10/239 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
++ Y +++ G SP P ++ L+ +G+ E A L G P L +
Sbjct: 857 NLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGY 916
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G K E+ +M + +N DI+ ++ ++++ L + L D F + GL
Sbjct: 917 RIAGDTEKVCELFESMVEQGMNPDIK-SYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPD 975
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+L+I K+G AL + +ME G + +N L+ G A +E
Sbjct: 976 LITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYE 1035
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
E KP+ TYN +I+ Y+ + S ++ G M+ R PN TY L
Sbjct: 1036 --ELLAKGWKPNVFTYNALIRGYSVSGS---PENAFAAYGRMIVGGCR--PNSSTYMQL 1087
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 6/213 (2%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ L++ DA + D +M+ G P ++ L+ Y + GD E + +
Sbjct: 877 LLDGLLKDGNIEDAEALFD---EMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMV 933
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLE 190
G+ P ++ + + G GL + + + + +L+ L ++ LE
Sbjct: 934 EQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLE 993
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+A ++ K G+ Y+ +I KAG + A ++ E+ A G F +N L+
Sbjct: 994 EALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALI 1053
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETY 283
+ G PE AFA + M G +P++ TY
Sbjct: 1054 RGYSVSGSPENAFAAYGRMIVGG--CRPNSSTY 1084
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 18/265 (6%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV M A G+ P R++ L++A+ D E + L + GVRP + R+
Sbjct: 192 DVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVL 251
Query: 150 GSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G G + IL ME+ D+ +L++ L L DA VF + K +
Sbjct: 252 GQAGRLEEAYRILRKMEEEGCKPDVVTNT-VLIQILCDAGRLADAKDVFWK-MKASDQKP 309
Query: 208 DEIYDLMIAEDC-KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
D + + + + C +GD + EI ++A G + + G + A F
Sbjct: 310 DRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVF 369
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ---PNVKTY 323
+ M+ + + P +YN +I + +A+ ++R ++ +H + PN T+
Sbjct: 370 DEMK--QKGIIPQQYSYNSLISGFLKADRFNRALELF--------NHMNIHGPTPNGYTH 419
Query: 324 ALLVECFTKYCAVTEAIRHFRALQN 348
L + K +A++ + +++
Sbjct: 420 VLFINYHGKSGESLKALKRYELMKS 444
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 96/253 (37%), Gaps = 10/253 (3%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV +M G+ P S++ L+ + A+ G P T +
Sbjct: 367 DVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYH 426
Query: 150 GSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G G + K L+ M+ I D+ +L L + L A +VF G+
Sbjct: 427 GKSGESLKALKRYELMKSKGIVPDVVAGNAVLYG-LAKTGRLGMAKRVFHELKAMGISPD 485
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
+ Y +MI KA + A++I EM N L+ G A+ F
Sbjct: 486 NITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIF- 544
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
E E ++P TYN ++ R +V++V +LL M + PN+ TY ++
Sbjct: 545 -YELKEMNLEPTDCTYNTLLAGLGRE---GKVKEVMQLLEGM--NSNSFPPNIITYNTVL 598
Query: 328 ECFTKYCAVTEAI 340
+C K V A+
Sbjct: 599 DCLCKNGEVNYAL 611
>gi|297830004|ref|XP_002882884.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328724|gb|EFH59143.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 409
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 9/181 (4%)
Query: 145 LARLFGS-KGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
L R++G+ G + +EIL M + +++ ++ LV K ++ +K+F+ K
Sbjct: 137 LMRIYGNLAGRINRAIEILFGMPDFGCWPSAKSFNFILNLLVSAKLFDEIHKIFVSAPKL 196
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ +++I C++G+ AL++ E F+ L+ G E A
Sbjct: 197 GVEIDACCLNILIKGLCESGNLEAALQLLDEFPKQKSRPNVMTFSPLIRGFCNKGKFEEA 256
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F E ME ++ ++PDT T+N +I + RV++ +LL M K +PN T
Sbjct: 257 FKLLERME--KERIEPDTITFNILISGLRKK---GRVEEGIDLLERM--KLKGCEPNPGT 309
Query: 323 Y 323
Y
Sbjct: 310 Y 310
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 15/145 (10%)
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+M AG T F +N ++ C G E A FE M++ + PDT TYN +I + +
Sbjct: 120 DMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG--LVPDTVTYNSMIDGFGK 177
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
D E + M +P+V TY L+ CF K+ + + +R ++ G
Sbjct: 178 VGRLDDTVCFFEEMKDMC-----CEPDVITYNALINCFCKFGKLPIGLEFYREMK----G 228
Query: 353 TKVLHNEGNFGDPLSLYLRALCREG 377
+ N ++ S + A C+EG
Sbjct: 229 NGLKPNVVSY----STLVDAFCKEG 249
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 7/154 (4%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+D + F G R T Y++MI CK GD A + EM+ G + T +N +
Sbjct: 112 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 171
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G + FE M+ + +PD TYN +I + + + ++ E M
Sbjct: 172 IDGFGKVGRLDDTVCFFEEMK--DMCCEPDVITYNALINCFCK---FGKLPIGLEFYREM 226
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
L+PNV +Y+ LV+ F K + +AI+ +
Sbjct: 227 --KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFY 258
Score = 40.0 bits (92), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 12/242 (4%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DMI AG P +++ ++ GD E A + G+ P T ++ FG G
Sbjct: 120 DMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG 179
Query: 154 LATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKG-GLRATDEI 210
+ M+ + D+ + L+ + L + F R KG GL+
Sbjct: 180 RLDDTVCFFEEMKDMCCEPDV-ITYNALINCFCKFGKLPIGLE-FYREMKGNGLKPNVVS 237
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y ++ CK G A++ +M G + + + L+ A C I ++ A E
Sbjct: 238 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLI--DANCKIGNLSDAFRLGNE 295
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+ ++ + TY +I AE R+++ EL G M D + PN+ +Y L+ F
Sbjct: 296 MLQVGVEWNVVTYTALIDGLCDAE---RMKEAEELFGKM--DTAGVIPNLASYNALIHGF 350
Query: 331 TK 332
K
Sbjct: 351 VK 352
>gi|356516061|ref|XP_003526715.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49240-like [Glycine max]
Length = 632
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 136/326 (41%), Gaps = 36/326 (11%)
Query: 82 NRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK--RELSAGVRPLH 139
N R ++ +M + G SP P +H L++ +T D +G + + RE GV
Sbjct: 212 NNKLERALEIKTEMDSRGFSPDPLVYHYLMLGHTRVSDGDGVLRLYEELRERLGGVVEDG 271
Query: 140 ETLIALARLFGSKGLATKGLEIL------AAMEKINYDIRQAWLILVEELVRNKYLEDAN 193
L + + KG+ + +E M + Y+ +++ L +N L++A
Sbjct: 272 VVFGCLMKGYFLKGMEKEAMECYEEVLGKKKMSAVGYNS------VLDALSKNGRLDEAL 325
Query: 194 KVFLRGAK-----GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM-EAAGRMATTFHFN 247
++F R K L +++++ C G A+E+ ++ E G T FN
Sbjct: 326 RLFDRMMKEYEPPKRLSVNLGSFNVIVDGYCGEGRFEEAMEVFRKIGEYRGCSPDTLSFN 385
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
+L+ G A + ME G+ + PD TY ++ A R +R D A
Sbjct: 386 NLIERLCDNGRIVEAEEVYGEME-GKG-VSPDEFTYGLLMDACFRE---NRADDSAAYFR 440
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
MV+ L+PN+ Y LV+ K + EA F + K+ + ++
Sbjct: 441 KMVDSG--LRPNLAVYNRLVDGLVKVGKIDEAKGFFELMVK-----KLKMDVASY----Q 489
Query: 368 LYLRALCREGRIIELLEALEAMAKDN 393
++ L EGR+ E+L+ ++ + DN
Sbjct: 490 FMMKVLSDEGRLDEMLQIVDTLLDDN 515
>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 10/239 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
++ Y +++ G SP P ++ L+ +G+ E A L G P L +
Sbjct: 857 NLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGY 916
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G K E+ +M + +N DI+ ++ ++++ L + L D F + GL
Sbjct: 917 RIAGDTEKVCELFESMVEQGMNPDIK-SYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPD 975
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+L+I K+G AL + +ME G + +N L+ G A +E
Sbjct: 976 LITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYE 1035
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
E KP+ TYN +I+ Y+ + S ++ G M+ R PN TY L
Sbjct: 1036 --ELLAKGWKPNVFTYNALIRGYSVSGS---PENAFAAYGRMIVGGCR--PNSSTYMQL 1087
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 6/213 (2%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ L++ DA + D +M+ G P ++ L+ Y + GD E + +
Sbjct: 877 LLDGLLKDGNIEDAEALFD---EMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMV 933
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLE 190
G+ P ++ + + G GL + + + + +L+ L ++ LE
Sbjct: 934 EQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLE 993
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+A ++ K G+ Y+ +I KAG + A ++ E+ A G F +N L+
Sbjct: 994 EALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALI 1053
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETY 283
+ G PE AFA + M G +P++ TY
Sbjct: 1054 RGYSVSGSPENAFAAYGRMIVGG--CRPNSSTY 1084
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 18/265 (6%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV M A G+ P R++ L++A+ D E + L + GVRP + R+
Sbjct: 192 DVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVL 251
Query: 150 GSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G G + IL ME+ D+ +L++ L L DA VF + K +
Sbjct: 252 GQAGRLEEAYRILRKMEEEGCKPDVVTNT-VLIQILCDAGRLADAKDVFWK-MKASDQKP 309
Query: 208 DEIYDLMIAEDC-KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
D + + + + C +GD + EI ++A G + + G + A F
Sbjct: 310 DRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVF 369
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ---PNVKTY 323
+ M+ + + P +YN +I + +A+ ++R ++ +H + PN T+
Sbjct: 370 DEMK--QKGIIPQQYSYNSLISGFLKADRFNRALELF--------NHMNIHGPTPNGYTH 419
Query: 324 ALLVECFTKYCAVTEAIRHFRALQN 348
L + K +A++ + +++
Sbjct: 420 VLFINYHGKSGESLKALKRYELMKS 444
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 96/253 (37%), Gaps = 10/253 (3%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV +M G+ P S++ L+ + A+ G P T +
Sbjct: 367 DVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYH 426
Query: 150 GSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G G + K L+ M+ I D+ +L L + L A +VF G+
Sbjct: 427 GKSGESLKALKRYELMKSKGIVPDVVAGNAVLYG-LAKTGRLGMAKRVFHELKAMGISPD 485
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
+ Y +MI KA + A++I EM N L+ G A+ F
Sbjct: 486 NITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIF- 544
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
E E ++P TYN ++ R +V++V +LL M + PN+ TY ++
Sbjct: 545 -YELKEMNLEPTDCTYNTLLAGLGRE---GKVKEVMQLLEGM--NSNSFPPNIITYNTVL 598
Query: 328 ECFTKYCAVTEAI 340
+C K V A+
Sbjct: 599 DCLCKNGEVNYAL 611
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ L + L + + AN++ GL Y+ +I CK G+ A+ I EME
Sbjct: 465 YTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEME 524
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNCVIQAYTRA 293
AAG + + L+ G F NM E + +KP TYN ++ + +
Sbjct: 525 AAGHRTDVYTYTTLIDTLCKSG----EFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMS 580
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
RV+ +LL M+E K ++PNV TY L++ +YC
Sbjct: 581 ---GRVEGGKKLLEWMLE--KNVRPNVVTYNSLMK---QYC 613
>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
Length = 794
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 110/497 (22%), Positives = 196/497 (39%), Gaps = 84/497 (16%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALA 146
D + D AAGL +F LV A++ G H A+ + R RP ++ T++
Sbjct: 123 DALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTIL--- 179
Query: 147 RLFGSKGLATKGLEILAAMEKINYDI-------RQAWLILVEELVRNKYLEDANKVFLRG 199
K L G+ IL A+ N + R + +L++ L + DA K+F
Sbjct: 180 -----KALVDSGV-ILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEM 233
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
G+ +IY ++++ C AG A+++ M+ G + +N LS G
Sbjct: 234 LDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRV 293
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG---MMVEDHKRL 316
AF ++ G + Y+C+I +A +D E G M+E + +
Sbjct: 294 NEAFQRLVMLQDGG--FALGLKGYSCLIDGLFQARRFD------EGFGYYKTMLE--RNI 343
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL--SLYLRALC 374
P+V Y +++ + CA EA R AL + V+ +G D + L+ LC
Sbjct: 344 SPDVVLYTIMI----RGCA--EAGRIEDALSFLD----VMKKKGFVPDTFCYNTVLKVLC 393
Query: 375 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARY 434
G + M ++N ++L +T++
Sbjct: 394 DHGDLERAHTLRSEMLQNN-------LVLDSTTQTIMICG-------------------- 426
Query: 435 ISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQN 494
+ + GL E + G+ DP + Y+ ++ +++ LE+ + K+ + N
Sbjct: 427 LCKRGLVDEAMQIFDEMGEHGCDPTVM--TYNALIDGFYREGRLEEARMLFHKM--EMGN 482
Query: 495 EGPAVLGDVSESDYVRVEERLKKLIKGPEQ--HVLKPKAASKMVVSELKEELDAQGLPTD 552
L ++ VR E L+KL+ Q VLK A K+ L+ +D+ +P
Sbjct: 483 NPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLK---AYKL----LRSIIDSGVVPDV 535
Query: 553 GTRNVLYQRVQKARRIN 569
T N L + KAR ++
Sbjct: 536 VTYNTLINGLCKARNLD 552
>gi|293333312|ref|NP_001168014.1| uncharacterized protein LOC100381738 [Zea mays]
gi|223945505|gb|ACN26836.1| unknown [Zea mays]
Length = 462
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 113/266 (42%), Gaps = 20/266 (7%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V ++I +M+ P +F L+ + N E A+ L++ G P + +
Sbjct: 128 VGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIIS 187
Query: 148 LFGSKGLATKGLEILAAM----EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
F + A L++L +M + I+++ +++ L + K DA ++ + K
Sbjct: 188 CFSDQARADDALKLLKSMLCKPDTISFNA------VLKCLCKAKRWYDAVELVAKMLKKD 241
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
R + ++++I C+ G +A+E+ M M ++ L++ + G+ E+AF
Sbjct: 242 CRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAF 301
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
F +M + D +YN ++ A +D D EL+ MV + PN T+
Sbjct: 302 DLFRSMP-----CRADIFSYNATLKGLCMAARWD---DAGELIADMVTED--CLPNEVTF 351
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNY 349
+L+ + V AI + + Y
Sbjct: 352 NILISSLCQKGLVNRAIDVYEQMPKY 377
>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 884
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 110/283 (38%), Gaps = 43/283 (15%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM+ G+ P +F+ ++ AY+ G + A + K L G+ P T ++ KG
Sbjct: 478 DMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKG 537
Query: 154 -----------LATKGLEI-----------------LAAMEKINYDIRQ--------AWL 177
+ KGL + A + Y++ A+
Sbjct: 538 RLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFS 597
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
++ L + +E+A + F +K G + +Y+ +I C G AL++ EM
Sbjct: 598 AFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQK 657
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G + F N +++ G + AF F M + + PDT TYN +I Y + D
Sbjct: 658 GLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIG--VTPDTVTYNTLIGGYCKV--LD 713
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
V E L M P++ TY + ++ F ++ A+
Sbjct: 714 MV-SADEFLNKMYAS--GWDPDITTYNIRIQGFCSSQKISRAV 753
>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
Length = 604
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 21/223 (9%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ LV L+ + A ++F G +Y MI+ +AG +A +A M+
Sbjct: 321 YSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMK 380
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
AG T +N L++ A+ + M+ E ++PD TYN ++ +A
Sbjct: 381 EAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMK--EVGIRPDVCTYNTLLSGSCKAGD 438
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG--- 352
+ V ELLG M++D QP+V T+ LV + K + EA+R R++ E G
Sbjct: 439 FAAVD---ELLGKMIDDG--CQPSVITFGTLVHGYCKVGKIDEALRILRSMD--ESGIHP 491
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP 395
V++N + LC+ G + +E + M + + P
Sbjct: 492 NNVIYNT---------LIDFLCKRGDVDLAIELFDEMKEKSVP 525
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)
Query: 108 HGLVVAYTLNGDHEG-AMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
+ +V L+ ++ G AM ++S G P + G + ++M+
Sbjct: 321 YSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMK 380
Query: 167 KINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
+ + + +A+ IL+ R K L +A ++ + G+R Y+ +++ CKAGD +
Sbjct: 381 EAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFA 440
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
E+ +M G + F L+ G + A +M+ E + P+ YN
Sbjct: 441 AVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMD--ESGIHPNNVIYNT 498
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+I + D EL M E K + NV T+ L++
Sbjct: 499 LIDFLCKRGDVDL---AIELFDEMKE--KSVPANVTTFNALLK 536
>gi|125559296|gb|EAZ04832.1| hypothetical protein OsI_27010 [Oryza sativa Indica Group]
Length = 700
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 12/195 (6%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
++ +V Y +NG + A +L+ G++P H T++++ L + +G E+ A +
Sbjct: 425 WNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYV- 483
Query: 167 KINYDIRQAWLI---LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD 223
I Y I + L++ + +LE A +VF + R T Y+++I+ K
Sbjct: 484 -IKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTE---RNT-VTYNILISSFGKHNH 538
Query: 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDY-MKPDTET 282
AL M+ G F LLSC + G+ + + +M + DY + P+ E
Sbjct: 539 EDQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYHSMLH--DYNISPEKEH 596
Query: 283 YNCVIQAYTRAESYD 297
Y+C++ Y+R D
Sbjct: 597 YSCIVDLYSRCGKLD 611
>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 81/180 (45%), Gaps = 8/180 (4%)
Query: 169 NYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
NY R + +++ R+ +++ A +F K + E YD +I +AG A
Sbjct: 138 NYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWA 197
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
+ + +M A + +N+L++ + G A + M ++ + PD T+N V+
Sbjct: 198 MNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMT--DNGVGPDLVTHNIVL 255
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
AY Y + EL+ +++P+ T+ +++ C +K ++A+ F +++
Sbjct: 256 SAYKSGRQYSKALSYFELM-----KGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMR 310
Score = 39.7 bits (91), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 82/209 (39%), Gaps = 15/209 (7%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+A GL P S++ L+ AY ++G A+ L G+ P + L +G
Sbjct: 346 MVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQ 405
Query: 155 ATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
K E+ M K + Y+ L++ N +L +A ++F + + G++
Sbjct: 406 PGKAKEVFLMMRKERRKPNVVTYN------ALIDAYGSNGFLAEAVEIFRQMEQDGIKPN 459
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
++A ++ N + ++ G T +N + E A A ++
Sbjct: 460 VVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQ 519
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESY 296
+M + +K D+ T+ +I R Y
Sbjct: 520 SMR--KKKVKADSVTFTILISGSCRMSKY 546
>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 105/263 (39%), Gaps = 11/263 (4%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ +++ +M + G+ S+ L+ AY NG +E ++ L+R V P T +
Sbjct: 166 KCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVI 225
Query: 147 RLFGSKGLATKGLEILAA---MEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
L +GL L A E + D+ + L+ ++A VF +GG
Sbjct: 226 NACARGDLDWEGLLGLFAEMRHEGVQPDL-VTYNTLLSACAARGLGDEAEMVFKTMIEGG 284
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
+ Y ++ K G + EME+ G + +N L+ A G + A
Sbjct: 285 IVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAM 344
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
F+ M+ P+ TY+ ++ Y + YD DV EL M E +P+ TY
Sbjct: 345 DVFKQMQAAG--CVPNASTYSILLNLYGKHGRYD---DVRELFLQMKESSA--EPDATTY 397
Query: 324 ALLVECFTKYCAVTEAIRHFRAL 346
+L+ F + E + F L
Sbjct: 398 NILIRVFGEGGYFKEVVTLFHDL 420
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 109/258 (42%), Gaps = 12/258 (4%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P +++ L+ A G + A K + G+ P T + FG G K
Sbjct: 249 GVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKV 308
Query: 159 LEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+L ME Y DI ++ +L+E + +++A VF + G Y +++
Sbjct: 309 AMLLKEMESEGYLPDI-SSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLN 367
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
K G + + E+ +M+ + +N L+ G + F ++ ++ +
Sbjct: 368 LYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLV--DENI 425
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
P+ ETY ++ A + + +D ++L M + K + P+ K Y+ L+E + +
Sbjct: 426 DPNMETYEGLVFACGKGGLH---EDAKKILFHM--NGKGIVPSSKAYSGLIEAYGQAALY 480
Query: 337 TEAIRHFRALQNYEGGTK 354
EA+ F + E G+K
Sbjct: 481 DEALVAFNTMN--EVGSK 496
Score = 44.7 bits (104), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 95/265 (35%), Gaps = 41/265 (15%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
HA+ DV M AAG P ++ L+ Y +G ++ + + P
Sbjct: 334 HAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPD 393
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
T L R+FG G Y ++ +F
Sbjct: 394 ATTYNILIRVFGEGG----------------------------------YFKEVVTLFHD 419
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+ E Y+ ++ K G H +A +I + M G + ++ ++ L+ +
Sbjct: 420 LVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAAL 479
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ A F M E K +TYN +I + R Y ++ +L M E +
Sbjct: 480 YDEALVAFNTMN--EVGSKSTIDTYNSLIHTFARGGLY---KEFEAILSRMRE--YGISR 532
Query: 319 NVKTYALLVECFTKYCAVTEAIRHF 343
N K+++ ++E + + EAI+ F
Sbjct: 533 NAKSFSGIIEGYRQSGQYEEAIKAF 557
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 17/239 (7%)
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDA 192
+P + L G +GL K EI M IR ++ L+ RN E +
Sbjct: 144 CKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGV-IRSVFSYTALINAYGRNGQYETS 202
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGD--HSNALEIAYEMEAAGRMATTFHFNHLL 250
++ R + + Y+ +I C GD L + EM G +N LL
Sbjct: 203 LELLERMKRERVSPNILTYNTVI-NACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLL 261
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
S A G+ + A F+ M G + P+ TY+ +++ + + +++ VA LL M
Sbjct: 262 SACAARGLGDEAEMVFKTMIEGG--IVPEITTYSYIVETFGKL---GKLEKVAMLLKEM- 315
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 369
+ + P++ +Y +L+E K ++ EA+ F+ +Q + N + L+LY
Sbjct: 316 -ESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQ----AAGCVPNASTYSILLNLY 369
>gi|449460864|ref|XP_004148164.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Cucumis sativus]
Length = 693
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 133/326 (40%), Gaps = 28/326 (8%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ M+++ LSP + L A NG E LK L G+ P H + L +++
Sbjct: 349 ILNSMVSSNLSPSVHCYTVLSSALYRNGRLEEVDGLLKGMLDNGIIPDHVLFLTLMKMYP 408
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG-AKGGLRATDE 209
L IL + K + ++ E + LE ++ L+ + L
Sbjct: 409 KGHELQLALNILETIVKNGCGCDPSVILASAEWQTSSNLEQKFEIVLKEISISDLNLAGV 468
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
+ ++I+ C+ + AL+ + M + G F +N L+ + E A + ++M
Sbjct: 469 AFSIVISALCETENFCYALDYLHNMVSLGCKPLLFTYNSLIRRLCKERLFEDAMSLIDHM 528
Query: 270 EYGEDY-MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+DY + P+T TY ++ Y R V +L M L+P+V Y ++
Sbjct: 529 ---KDYSLFPNTTTYLIIVNEYCRQ---GNVTAAYHILRKM--RQVGLKPSVAIYDSIIR 580
Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP-LSLYL---RALCREGRIIELLE 384
C ++ + EA F+ + E G DP YL + + GRI+E E
Sbjct: 581 CLSREKRICEAEVVFKMM--LEAGM----------DPDKKFYLTMIKGYSKNGRILEACE 628
Query: 385 ALEAMAKDNQPVPPRAMILSRKYRTL 410
E M +++ +PP + I + R L
Sbjct: 629 LFEQMVENS--IPPSSHIYTALIRGL 652
>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
Length = 641
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 110/295 (37%), Gaps = 37/295 (12%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ D RV ++ +M G +P +++ L+ L G E A+ L R +S+ P
Sbjct: 250 CKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNV 309
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T + +G A G +LA ME+ Y + + + L+ L + ++A ++F
Sbjct: 310 VTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKE 369
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+Y +I C+ G ALE+ EM + ++ L+ G
Sbjct: 370 MTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGN 429
Query: 259 PEVAFATFENM-----------------------EYGEDYM----------KPDTETYNC 285
A +++M + E M KPD Y
Sbjct: 430 GHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGS 489
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
+I + A V+D +L M+ QP+V TY +L+ K +++ AI
Sbjct: 490 MINGLSNA---GLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAI 541
>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
Length = 1450
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 135/334 (40%), Gaps = 28/334 (8%)
Query: 49 HGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFH 108
H L T+G+V++ ++++ + + R + + V +M + ++ + ++
Sbjct: 765 HLIDLTETDGTVLNNIS-----VYVDVIEAYGRLKLWQKAESVAGNMRQSCITVNRKVWN 819
Query: 109 GLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI 168
L+ AY +G +E A + G P +++ L + G + ++ ++ I
Sbjct: 820 ALIEAYAASGCYERARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDI 879
Query: 169 NYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
+ I + + L++++ R + + K++ G + +Y +M C+ +
Sbjct: 880 GFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDV 939
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
+ EME AG +N +L + I + T ED ++PD +TYN +I
Sbjct: 940 EAMLSEMEEAGFKPDLSIWNSVL--KMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILI 997
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKR---LQPNVKTYALLVECFTKYCAVTEAIRHFR 344
Y R D G+++ D R L+P + TY LV F K V +A F
Sbjct: 998 VMYCR--------DHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFE 1049
Query: 345 ALQN---------YEGGTKVLHNEGNFGDPLSLY 369
LQ+ Y K+ N G+ L+
Sbjct: 1050 ELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLF 1083
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 22/204 (10%)
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A +VF R A+ + T ++Y+ M+ ++G + E+ M G FN L++
Sbjct: 241 AVEVFTR-AEPSVENTVKVYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLIN 299
Query: 252 CQATCG--IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G P +A E ++PD TYN +I A +RA + +++ + M
Sbjct: 300 ARLKAGEMTPNLAIELLT--EVRRSGLRPDIITYNTLISACSRASN---LEEAVNVFDDM 354
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL- 368
V H +P++ TY ++ + + +A + F L+ + G F D +S
Sbjct: 355 VAHH--CEPDLWTYNAMISVYGRCGLSGKAEQLFNDLE----------SRGFFPDAVSYN 402
Query: 369 -YLRALCREGRIIELLEALEAMAK 391
+L A REG + ++ + E M K
Sbjct: 403 SFLYAFAREGNVEKVKDICEEMVK 426
>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 105/263 (39%), Gaps = 11/263 (4%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ +++ +M + G+ S+ L+ AY NG +E ++ L+R V P T +
Sbjct: 166 KCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVI 225
Query: 147 RLFGSKGLATKGLEILAA---MEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
L +GL L A E + D+ + L+ ++A VF +GG
Sbjct: 226 NACARGDLDWEGLLGLFAEMRHEGVQPDL-VTYNTLLSACAARGLGDEAEMVFKTMIEGG 284
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
+ Y ++ K G + EME+ G + +N L+ A G + A
Sbjct: 285 IVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAM 344
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
F+ M+ P+ TY+ ++ Y + YD DV EL M E +P+ TY
Sbjct: 345 DVFKQMQAAG--CVPNASTYSILLNLYGKHGRYD---DVRELFLQMKESSA--EPDATTY 397
Query: 324 ALLVECFTKYCAVTEAIRHFRAL 346
+L+ F + E + F L
Sbjct: 398 NILIRVFGEGGYFKEVVTLFHDL 420
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 109/258 (42%), Gaps = 12/258 (4%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P +++ L+ A G + A K + G+ P T + FG G K
Sbjct: 249 GVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKV 308
Query: 159 LEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+L ME Y DI ++ +L+E + +++A VF + G Y +++
Sbjct: 309 AMLLKEMESEGYLPDI-SSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLN 367
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
K G + + E+ +M+ + +N L+ G + F ++ ++ +
Sbjct: 368 LYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLV--DENI 425
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
P+ ETY ++ A + + +D ++L M + K + P+ K Y+ L+E + +
Sbjct: 426 DPNMETYEGLVFACGKGGLH---EDAKKILFHM--NGKGIVPSSKAYSGLIEAYGQAALY 480
Query: 337 TEAIRHFRALQNYEGGTK 354
EA+ F + E G+K
Sbjct: 481 DEALVAFNTMN--EVGSK 496
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 95/265 (35%), Gaps = 41/265 (15%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
HA+ DV M AAG P ++ L+ Y +G ++ + + P
Sbjct: 334 HAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPD 393
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
T L R+FG G Y ++ +F
Sbjct: 394 ATTYNILIRVFGEGG----------------------------------YFKEVVTLFHD 419
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+ E Y+ ++ K G H +A +I + M G + ++ ++ L+ +
Sbjct: 420 LVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAAL 479
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ A F M E K +TYN +I + R Y ++ +L M E +
Sbjct: 480 YDEALVAFNTMN--EVGSKSTIDTYNSLIHTFARGGLY---KEFEAILSRMRE--YGISR 532
Query: 319 NVKTYALLVECFTKYCAVTEAIRHF 343
N K+++ ++E + + EAI+ F
Sbjct: 533 NAKSFSGIIEGYRQSGQYEEAIKAF 557
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 17/239 (7%)
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDA 192
+P + L G +GL K EI M IR ++ L+ RN E +
Sbjct: 144 CKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGV-IRSVFSYTALINAYGRNGQYETS 202
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGD--HSNALEIAYEMEAAGRMATTFHFNHLL 250
++ R + + Y+ +I C GD L + EM G +N LL
Sbjct: 203 LELLERMKRERVSPNILTYNTVI-NACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLL 261
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
S A G+ + A F+ M G + P+ TY+ +++ + + +++ VA LL M
Sbjct: 262 SACAARGLGDEAEMVFKTMIEGG--IVPEITTYSYIVETFGKL---GKLEKVAMLLKEM- 315
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 369
+ + P++ +Y +L+E K ++ EA+ F+ +Q + N + L+LY
Sbjct: 316 -ESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQ----AAGCVPNASTYSILLNLY 369
>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
Length = 547
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 8/171 (4%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEA 236
ILV+ L R K + ++V R + G+ + + Y +I+ CKAG +A+ + +M
Sbjct: 255 ILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLE 314
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
+G T +N L++ E A + + + PD T++ +I Y R
Sbjct: 315 SGTRPNTVTYNVLINGYGKALDMESAVRMYRQLIL--RHCPPDVVTFSSLIDGYCRCGQL 372
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
D + + + +G+ +QPNV T+++++ K EA+ R L
Sbjct: 373 DDAKRIWKEMGL-----HHIQPNVYTFSIIIHSLCKQNRSAEALDILRELN 418
Score = 46.6 bits (109), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 35/205 (17%)
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE-IYD 212
L TKG + +E Y+ L+ L+ + +DA +F + GL + D ++
Sbjct: 166 LLTKGSRLGCCIEPYAYNY------LLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFN 219
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS--CQATCGIPEVAFATFENME 270
++I C+ G+ ALE+ M G T N L+ C+A + +
Sbjct: 220 VVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRA------------KQVN 267
Query: 271 YGEDYMK---------PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
G + ++ P+ TY VI Y +A +++D + M+E R PN
Sbjct: 268 KGHEVLRRLQRDGVCMPNAVTYTSVISGYCKA---GKMEDAMSVYNDMLESGTR--PNTV 322
Query: 322 TYALLVECFTKYCAVTEAIRHFRAL 346
TY +L+ + K + A+R +R L
Sbjct: 323 TYNVLINGYGKALDMESAVRMYRQL 347
>gi|326505288|dbj|BAK03031.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326529675|dbj|BAK04784.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 597
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 15/216 (6%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A L+ L R + A +VF + G+ +Y+ M+ KAGD + A +
Sbjct: 145 HACTALLTSLARARMTATARRVFDGMGRAGVAMNTHVYNAMLHVCLKAGDAARAEALMTR 204
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+A G F FN ++ G+ A + M D ++ D T+N VI +
Sbjct: 205 MDATGVPLDLFSFNTAIALYVRKGMQYEAMCVRDRM--ANDGVEADIVTWNTVIHGMCKE 262
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
R+++ ++L MV ++P+ TY LV+ + + V EA+ + RA+ G
Sbjct: 263 ---GRMKEASQLHRDMVA--AGIEPDTVTYTTLVDGYCRAGDVGEAM-NLRAVMEARG-- 314
Query: 354 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+L + + +R LC +G++ E+ L M
Sbjct: 315 -MLPGVATY----NAIIRKLCEDGKMKEVNGLLSEM 345
>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
Length = 690
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 21/223 (9%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ LV L+ + A ++F G +Y MI+ +AG +A +A M+
Sbjct: 321 YSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMK 380
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
AG T +N L++ A+ + M+ E ++PD TYN ++ +A
Sbjct: 381 EAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMK--EVGIRPDVCTYNTLLSGSCKAGD 438
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG--- 352
+ V ELLG M++D QP+V T+ LV + K + EA+R R++ E G
Sbjct: 439 FAAVD---ELLGKMIDDG--CQPSVITFGTLVHGYCKVGKIDEALRILRSMD--ESGIHP 491
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP 395
V++N + LC+ G + +E + M + + P
Sbjct: 492 NNVIYNT---------LIDFLCKRGDVDLAIELFDEMKEKSVP 525
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)
Query: 108 HGLVVAYTLNGDHEG-AMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
+ +V L+ ++ G AM ++S G P + G + ++M+
Sbjct: 321 YSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMK 380
Query: 167 KINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
+ + + +A+ IL+ R K L +A ++ + G+R Y+ +++ CKAGD +
Sbjct: 381 EAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFA 440
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
E+ +M G + F L+ G + A +M+ E + P+ YN
Sbjct: 441 AVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMD--ESGIHPNNVIYNT 498
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+I + D EL M E K + NV T+ L++
Sbjct: 499 LIDFLCKRGDVDL---AIELFDEMKE--KSVPANVTTFNALLK 536
>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
Length = 821
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 11/222 (4%)
Query: 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA-TKGLEILA 163
R++ ++ +Y+ G +E A+ ++ +G+ P T + ++G G + K L +L
Sbjct: 210 RAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLD 269
Query: 164 AM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKA 221
M + + +D ++ R L++A + F+ G Y+ ++ KA
Sbjct: 270 EMRSKGLGFD-EFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKA 328
Query: 222 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 281
G +S AL I EME +N L++ G E A + M E+ +KP+
Sbjct: 329 GIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMT--ENGIKPNAV 386
Query: 282 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
TY +I AY RA D+ + + + PNV TY
Sbjct: 387 TYTTMINAYGRAAQVDKALSLYDQM-----KESGCAPNVCTY 423
Score = 45.8 bits (107), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 114/306 (37%), Gaps = 28/306 (9%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ DM G +P +++ ++ G H+ + S G P +T L G
Sbjct: 442 ILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASG 501
Query: 151 SKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G +I M + + A + L+ L R A V G + ++
Sbjct: 502 RCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSET 561
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL----SCQATCGIPEVAFAT 265
Y L++ K G I ++ + L+ C+A G+ E AF
Sbjct: 562 SYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGM-ERAFQA 620
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+ Y KPD +N ++ ++R +DR ++ L+ LQP++ TY
Sbjct: 621 LQKHGY-----KPDLVVFNSMLSMFSRKNMHDRAHEIMHLI-----QECGLQPDLVTYNS 670
Query: 326 LVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELL 383
L++ + + +A R LQ N G+ D +S ++ CR+G + E L
Sbjct: 671 LMDLYARGGECWKAEEILRELQ----------NSGDKSDLISYNTVIKGFCRQGLMHEAL 720
Query: 384 EALEAM 389
L M
Sbjct: 721 RTLSEM 726
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 108/261 (41%), Gaps = 47/261 (18%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALAR 147
++ D + G P ++ L+ G+ A+ L G++P L+ TLI
Sbjct: 343 IVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI---- 398
Query: 148 LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
KGL+ +G+ + AA + AN++ ++ GL
Sbjct: 399 ----KGLSNQGMILEAA-------------------------QLANEM----SEKGLIPE 425
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
+ +++++ CK G S+A + M + G F FN L+ +T E A +
Sbjct: 426 VQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILD 485
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M ++ + PD TYN ++ + + +DV E MVE K PN+ T+ +L+
Sbjct: 486 VML--DNGVDPDVYTYNSLLNGLCKTSKF---EDVMETYKTMVE--KGCAPNLFTFNILL 538
Query: 328 ECFTKYCAVTEAIRHFRALQN 348
E +Y + EA+ ++N
Sbjct: 539 ESLCRYRKLDEALGLLEEMKN 559
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 127/298 (42%), Gaps = 20/298 (6%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G+ +F+ L+ A A+ L+ + G++P T L + F +G
Sbjct: 149 MVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGD 208
Query: 155 ATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
L++ M + + +LV + +E+A + L ++ G ++
Sbjct: 209 LNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNS 268
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
++ C+ G+ ++AL+I M G + +N L+S G E A + M E
Sbjct: 269 LVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRE 328
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE--CFT 331
P+T TYN +I A + + D+A +L K L P+V T+ L++ C +
Sbjct: 329 --CSPNTVTYNTLISALCKENEIEAATDLARIL-----VSKGLLPDVCTFNTLIQGLCLS 381
Query: 332 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
K + A+ F ++N G K +E + S+ + +LC E R+ E L L+ M
Sbjct: 382 KNQDI--AMEMFEEMKN--KGCK--PDEFTY----SILIDSLCYERRLKEALMLLKEM 429
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 8/236 (3%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M GL P +F L+ + GD GA+ K+ L G + ++ L F +G
Sbjct: 183 EMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEG 242
Query: 154 LATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ L + + + + Q LV R + DA + + G Y+
Sbjct: 243 RVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYN 302
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I+ CK G+ A+EI +M T +N L+S A C E+ AT
Sbjct: 303 SLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLIS--ALCKENEIEAATDLARILV 360
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+ PD T+N +IQ +++ D ++ E + +K +P+ TY++L++
Sbjct: 361 SKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEM-----KNKGCKPDEFTYSILID 411
Score = 42.7 bits (99), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 5/210 (2%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ +++ GL P +F+ L+ L+ + + AM + + G +P T L
Sbjct: 354 DLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSL 413
Query: 150 GSKGLATKGLEILAAMEKINYDIRQA--WLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+ + L +L ME R A + L++ L +++ +EDA ++F + G+ +
Sbjct: 414 CYERRLKEALMLLKEMESSGCA-RNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRS 472
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ +I CK A ++ +M G F +N LL+ G E A +
Sbjct: 473 SVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQ 532
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
M + +PD TY +I RA D
Sbjct: 533 TM--ASNGCEPDIFTYGTLIGGLCRAGRVD 560
>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 111/280 (39%), Gaps = 19/280 (6%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DMI AG+ P ++ L+ + AM R A P T + ++G G
Sbjct: 68 DMINAGIRPDNITYSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVG 127
Query: 154 LATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ + + +++K + + + +V R Y+ A +F G++ +Y+
Sbjct: 128 KYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYN 187
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+MI+ +AG +AL++ EM+ AG + ++ + G F +M
Sbjct: 188 IMISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMR-- 245
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+D + D YN VI+ A V + + L MVE QPN TY ++ + K
Sbjct: 246 QD-LACDIIVYNAVIKMCREA---GLVPEAEQYLREMVEYGH--QPNDWTYRNMISLYAK 299
Query: 333 YCAVTEAIRHFRALQNYEGG--------TKVLHNEGNFGD 364
EA R F L E G T +L GN D
Sbjct: 300 NGMAVEAQRMFSQL--VEAGYQPDVMSYTSLLQGYGNAKD 337
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 108/244 (44%), Gaps = 17/244 (6%)
Query: 131 LSAGVRP---LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNK 187
++AG+RP + TLI+ A + A + + + + + + +I V V K
Sbjct: 70 INAGIRPDNITYSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKV-GK 128
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
Y ++A ++ K G + Y M+ +AG S A+ I EM+ +G + +N
Sbjct: 129 Y-DEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYN 187
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++SC G A F+ M+ + +KP+ T + V++ Y+R+ V E LG
Sbjct: 188 IMISCLGRAGRMGHALKVFQEMK--QAGVKPNAVTLSTVMEIYSRS------GKVMEGLG 239
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS 367
+ + L ++ Y +++ + V EA ++ R + Y N+ + + +S
Sbjct: 240 IFHHMRQDLACDIIVYNAVIKMCREAGLVPEAEQYLREMVEYGHQP----NDWTYRNMIS 295
Query: 368 LYLR 371
LY +
Sbjct: 296 LYAK 299
>gi|298711207|emb|CBJ32428.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 870
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 103/258 (39%), Gaps = 28/258 (10%)
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN-----YDIRQAWLILVEELVRN 186
S G+ P T L RL G G GLE++ ME Y ++ L R
Sbjct: 138 SEGLAPTAITYNVLLRLCGLGGCWATGLELMGMMEDEGITPNPYHYNSMFM----ALERG 193
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIA--EDCKAGDHSNALEIAYEMEAAGRMATTF 244
+ +A ++F + G R Y +I + C D + A + EM +T
Sbjct: 194 ERWREAAELFRKMRACGTRPNALTYAPLIGVMDRCNKQDMAGA--VLKEMLRESPRDSTR 251
Query: 245 HFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
+N LL+ A E A FE+M+ + +KPD TYN VI A R RV++
Sbjct: 252 EYNLLLNACAKARKWEHAQLVFEDMKK-KAGVKPDNVTYNTVINALGRC---GRVKEATV 307
Query: 305 LLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR---------ALQNYEGGTKV 355
L M E + L P+V T+ L+ + A+ F L+ Y+G
Sbjct: 308 HLHAMKE--QGLSPDVVTFGTLIHACAQSAKREPALALFAELVSRGLKPNLEAYKGCIVS 365
Query: 356 LHNEGNFGDPLSLYLRAL 373
H G++ L L+ R L
Sbjct: 366 CHKTGHYQQGLDLFNRML 383
Score = 43.5 bits (101), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 10/201 (4%)
Query: 133 AGVRPLHETLIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLE 190
AGV+P + T + G G + L AM++ ++ D+ + L+ ++ E
Sbjct: 280 AGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEQGLSPDV-VTFGTLIHACAQSAKRE 338
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
A +F GL+ E Y I K G + L++ M A FN +
Sbjct: 339 PALALFAELVSRGLKPNLEAYKGCIVSCHKTGHYQQGLDLFNRMLADKVRMDRVVFNTAI 398
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
+C A + A + M E + PD +YN I +A+ + Q + +L M
Sbjct: 399 ACCAQLKLWRRGVAMLDEMR--ERKVAPDQYSYNSAIYGCVKAQ---QSQQMTMVLARMR 453
Query: 311 EDHKRLQPNVKTYALLVECFT 331
ED P+V TY+ L+ C
Sbjct: 454 EDG--FDPDVWTYSNLIRCLA 472
>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Cucumis sativus]
Length = 580
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 7/158 (4%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
++ +K++ + + GL+ Y L+I+ KA AL + EM AG T +N L
Sbjct: 295 KEVSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNIL 354
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
L A G+ E A F++M+ D PD +Y ++ AY A + ++ L
Sbjct: 355 LDAFAISGMVEQAKIVFKSMK--RDRCSPDICSYTTMLSAYVNASDMEGAENFFRRL--- 409
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+PNV TY L++ + K + + I+ + ++
Sbjct: 410 --KQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMK 445
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 4/150 (2%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
IYD M AGL P S+ L+ AY E A+ + L AG+RP H+ L F
Sbjct: 300 IYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFA 359
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G+ + + +M ++ + DI ++ ++ V +E A F R + G R
Sbjct: 360 ISGMVEQAKIVFKSMKRDRCSPDI-CSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNV 418
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
Y +I K + ++ EM+ G
Sbjct: 419 VTYGTLIKGYAKINNLEKMIKRYEEMKVNG 448
>gi|403413954|emb|CCM00654.1| predicted protein [Fibroporia radiculosa]
Length = 1139
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 123/305 (40%), Gaps = 28/305 (9%)
Query: 46 QQKHGDSLLSTNGSVVSAAEQGLRLIFMEE---------LMQHARNRDAPRVNDVIYDMI 96
QK G L + G V A E RL+ + + HA D RV ++ +
Sbjct: 422 HQKLGLFLFARQGDVPRAEEYFNRLVQRHQANSRSITLVMHAHAVKGDTDRVVELFHHFF 481
Query: 97 --AAGLSPGPRS---FHGLVVAYTL--NGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
A+ P PRS FH VV Y NGD G L++ AG++P + + F
Sbjct: 482 PPASPSKPEPRSPNLFHYTVVIYAFSRNGDLSGMNQWLEKMTQAGIKPDTHVYTIILQSF 541
Query: 150 GSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G ++L M + R A+ ++ L R + A +++ R G+
Sbjct: 542 AERGDMAHIADLLNQMHAVGLPPTRHAYTTILGLLARRRDPVAAEEIYKRALTEGVVPDR 601
Query: 209 EIYDLMIAEDCKAGDHSN---ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP-EVAFA 264
+ ++ ++G + A + + G + +N LL G P V +
Sbjct: 602 RMLTALMNAYVESGQWAGVIRAFDYIHSSAHRGIRLSLEIYNTLLKAYVYIGAPFRVVAS 661
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM--VEDHKRLQPNVKT 322
F+ +E + ++PD T+ +IQ+ A D ++ AEL M + ++ + ++ T
Sbjct: 662 LFQKLE--DARVRPDAHTFALLIQS---ACDSDLLEIAAELFAEMERLAENWQSHLHINT 716
Query: 323 YALLV 327
Y + +
Sbjct: 717 YVMTI 721
>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Brachypodium distachyon]
Length = 1102
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 11/214 (5%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALA 146
D+ Y +++ G SP P ++ L+ +G E A L G +P ++ L+
Sbjct: 867 DLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGY 926
Query: 147 RLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
RL G+ K E+ M + IN DI+ ++ +L+ L L D+ F + + GL
Sbjct: 927 RLAGN---TEKVCELFQNMVDQGINPDIK-SYTVLIGALCTAGRLNDSLSYFRQLTELGL 982
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
Y+L+I ++G A+ + +ME +G + +N L+ G A
Sbjct: 983 EPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGK 1042
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+E E ++ KP+ TYN +I Y+ + S D
Sbjct: 1043 MYE--ELLKNGWKPNVFTYNALIGGYSVSGSTDN 1074
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 6/213 (2%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ L++ + DA D+ +M+ G P ++ L+ Y L G+ E + +
Sbjct: 887 LLDGLLKDGKIEDA---EDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMV 943
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLE 190
G+ P ++ L + G L + ++ + + +L+ L R+ LE
Sbjct: 944 DQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLE 1003
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+A +F K G+ Y+ +I K G + A ++ E+ G F +N L+
Sbjct: 1004 EAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALI 1063
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETY 283
+ G + AFA++ M G P++ TY
Sbjct: 1064 GGYSVSGSTDNAFASYGQMIVGG--CPPNSSTY 1094
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 82/172 (47%), Gaps = 9/172 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ ++++ + ++ +ED KV G +T Y+ +I+ K+ A+++ Y++
Sbjct: 814 YNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLM 873
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAE 294
+ G T + LL G E A F+ M +YG KP+ YN ++ Y A
Sbjct: 874 SEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYG---CKPNRAIYNILLNGYRLAG 930
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ ++V EL MV+ + + P++K+Y +L+ + +++ +FR L
Sbjct: 931 NTEKV---CELFQNMVD--QGINPDIKSYTVLIGALCTAGRLNDSLSYFRQL 977
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 117/289 (40%), Gaps = 37/289 (12%)
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANK 194
+P T I L G G + +EI AM+ Y D A+ +V+ L + +++A+
Sbjct: 318 KPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASD 377
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
VF + + G+ Y+ +I+ KA ++ALE+ M G + + ++
Sbjct: 378 VFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYG 437
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G A +E M+ + PD N V+ + ++ + V L +
Sbjct: 438 KSGESLKAIKRYELMK--SKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSI----- 490
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN-----------------YEGGT---- 353
+ P+ TY ++++C +K EA++ F + Y+ G
Sbjct: 491 GVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEA 550
Query: 354 -KVLH--NEGNFGDP----LSLYLRALCREGRIIELLEALEAMAKDNQP 395
K+ H E N DP + L L REG++ E++ LE M ++ P
Sbjct: 551 WKIFHELKEMNL-DPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYP 598
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 112/273 (41%), Gaps = 54/273 (19%)
Query: 46 QQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPR 105
QQK S + + GSVV A +N P ++ DMI ++P +
Sbjct: 466 QQKGIKSDVISFGSVVKA---------------FCKNGKIPEAVAILDDMIYKDVAPNAQ 510
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
++ ++ AY +GD E A+ +++ ++GV S + T
Sbjct: 511 VYNSIIDAYIESGDTEQALLLVEKMKNSGV---------------SASIVT--------- 546
Query: 166 EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
+ +L++ L R+ +++A ++ GLR Y+ +I+ C GD
Sbjct: 547 ----------YNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTD 596
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
ALE+ EM G T + L+S A+ G ++ M + ++P + Y
Sbjct: 597 KALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKN--VEPSSSIYGI 654
Query: 286 VIQAYTRAESYDRVQDVAELL---GMMVEDHKR 315
++ AY R E+ +V + + + G+ +D KR
Sbjct: 655 MVDAYVRCENDSKVASLKKEMSEKGIAFDDTKR 687
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 97/249 (38%), Gaps = 60/249 (24%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
IL+ L ++ + A +VF GL T IY+ +I C+ D
Sbjct: 339 ILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRG----------- 387
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
AF FE M+ +++PD TYN +I + E
Sbjct: 388 ------------------------AFCIFEQMK--SRHIRPDHITYNALINGLCKLEMVT 421
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+ +D+ +M + + P+V+T+ L++ Y + + F L + +
Sbjct: 422 KAEDL-----VMEMEKSGVDPSVETFNTLID---AYGTAGQLEKCFTVLSD-------MQ 466
Query: 358 NEGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
+G D +S ++A C+ G+I E + L+ M + V P A + Y +++ ++I
Sbjct: 467 QKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKD--VAPNAQV----YNSIIDAYI 520
Query: 416 EPLQEEAEL 424
E E L
Sbjct: 521 ESGDTEQAL 529
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 115/302 (38%), Gaps = 59/302 (19%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
++ GL P ++ L+ Y D GA ++ S +RP H T AL +
Sbjct: 360 LVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 419
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
TK +++ ME K G+ + E ++ +
Sbjct: 420 VTKAEDLVMEME----------------------------------KSGVDPSVETFNTL 445
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFENMEYGE 273
I AG + +M+ G + F ++ G IPE A A ++M Y +
Sbjct: 446 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPE-AVAILDDMIYKD 504
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFT 331
+ P+ + YN +I AY ES D Q + ++VE K + ++ TY LL++
Sbjct: 505 --VAPNAQVYNSIIDAYI--ESGDTEQAL-----LLVEKMKNSGVSASIVTYNLLLKGLC 555
Query: 332 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAM 389
+ + EA E L N+G D +S + A C +G + LE L+ M
Sbjct: 556 RSSQIDEA----------EELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEM 605
Query: 390 AK 391
K
Sbjct: 606 NK 607
Score = 39.7 bits (91), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++IA ++G S+AL++ EM G +N ++ G E F + M
Sbjct: 197 YNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQML 256
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+ D KP+ TYN ++ R D + + + + H L P+ TY++L +
Sbjct: 257 H--DGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMA----SHSML-PDGFTYSILFDGL 309
Query: 331 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
T+ + F ++ + G + G + S+ L LC++G++ + + E +
Sbjct: 310 TRTGESQTMLSLFA--ESLKKGVML----GAY--TCSILLNGLCKDGKVAKAKQVFEMLV 361
Query: 391 KDNQPVPPRAMILSRKYRTLVSSWIE 416
+ + P +I Y TL++ + +
Sbjct: 362 --HTGLVPTTVI----YNTLINGYCQ 381
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 113/547 (20%), Positives = 201/547 (36%), Gaps = 67/547 (12%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM+ G P ++ L+ A + AM L + G P T + +G
Sbjct: 170 DMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 229
Query: 154 LATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
E L + + ++ +++ L K ED ++F + + +D
Sbjct: 230 RVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFD 289
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EY 271
+++ C+ G A+++ +M G A T N +++ G + AF NM Y
Sbjct: 290 MLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSY 349
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
G PDT +Y V++ RAE R +D ELL MV K PN T+ +
Sbjct: 350 G---CSPDTISYTTVLKGLCRAE---RWEDAKELLKEMV--RKNCPPNEVTFNTFICILC 401
Query: 332 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391
+ + +A + + ++ + C +GR+ LE +M
Sbjct: 402 QKGLIEQATMLIEQMSEHGCEVNIVTYNA--------LVNGFCVQGRVDSALELFYSM-- 451
Query: 392 DNQPVPPRAMILSRKYRTLVSSWI--EPLQEEAELGYEI------------DYIARYISE 437
P P + Y TL++ E L AEL E+ + + + +
Sbjct: 452 ---PCKPNTI----TYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQ 504
Query: 438 GGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQRCLEDGKKYHRKLLRTLQNEG- 496
GL E V + + P+ + + N + C + +LL L + G
Sbjct: 505 KGLMDEAIELVEQMMEHGCTPNLITY---NTLLDGITNDC---NSEEALELLHGLVSNGV 558
Query: 497 -------PAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPKAA--SKMVVSELKEELDAQ 547
+++G +S D RVEE + K+ + ++PKA +K++++ K
Sbjct: 559 SPDIVTYSSIIGVLSRED--RVEEAI-KMFHIVQDLGMRPKAVIYNKILLALCKR----- 610
Query: 548 GLPTDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEE-EEEVDEEVDELISRIKLEEGNT 606
TDG + V N L E+ +E + + EL SR L +
Sbjct: 611 -CNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVLNKNLL 669
Query: 607 EFWKRRF 613
E W+ +F
Sbjct: 670 EEWRPKF 676
>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 685
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 173 RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
R A++ ++E L R +A ++ + + G+ +Y+ +++ K S+ ++
Sbjct: 441 RDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYE 500
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+M+ G F +N L+S G + A FE +E + KPD +YN +I +
Sbjct: 501 KMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSD--CKPDIISYNSLINCLGK 558
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
D A + + ++D K L P+V TY+ L+ECF K
Sbjct: 559 NGDVDE----AHMRFLEMQD-KGLNPDVVTYSTLIECFGK 593
Score = 47.4 bits (111), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 19/263 (7%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+ G +P +++ ++ A + +G + A+ + RP T + + ++G
Sbjct: 329 EMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEG 388
Query: 154 LATKGLEILAAMEK-INYDIRQAWLILVEELVRNKYLEDANKVFLR---GAKGGLRATDE 209
+ E+L K IN I + LV L + + +A+++F GG R +
Sbjct: 389 QLGRLDEVLEVSNKFINKSI---YAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDR---D 442
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y M+ C+ G A+E+ ++ G T +N +LS +E M
Sbjct: 443 AYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKM 502
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ +D PD TYN +I + R +V E L + +P++ +Y L+ C
Sbjct: 503 K--QDGPFPDIFTYNILISSLGRVGKVKEAVEVFEEL-----ESSDCKPDIISYNSLINC 555
Query: 330 FTKYCAVTEAIRHFRALQNYEGG 352
K V EA H R L+ + G
Sbjct: 556 LGKNGDVDEA--HMRFLEMQDKG 576
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++I+ + G A+E+ E+E++ +N L++C G + A F M+
Sbjct: 514 YNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQ 573
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+ + PD TY+ +I+ + + D+V+ L M+ + PN+ TY +L++C
Sbjct: 574 --DKGLNPDVVTYSTLIECFGKT---DKVEMARSLFDRMIT--QGCCPNIVTYNILLDCL 626
Query: 331 TKYCAVTEAIRHFRALQ 347
+ E + + L+
Sbjct: 627 ERAGRTAETVDLYAKLR 643
>gi|413948334|gb|AFW80983.1| hypothetical protein ZEAMMB73_782047 [Zea mays]
Length = 436
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 117/295 (39%), Gaps = 27/295 (9%)
Query: 137 PLHETLIALARLFGSKGLATK---GLEILAAMEKINYDIRQAWLILVEELVRNKYLEDAN 193
PL T A A L G A++ L + A+ + L+ LV N ++ A
Sbjct: 89 PLQPT--AFAALIDHLGAASRPDAALLVFRAVPAFCSHSNATFHALLHSLVCNGRVDAAR 146
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
+ K G+R Y++++ C S A + EM A G T FN L+
Sbjct: 147 DMLPEAPKLGVRTNAVSYNIILKGVCHRDGFSGARVVLDEMLARGVRPTVVTFNTLVG-- 204
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
+ C E+A A E + P+ TY ++Q A YD D +LL M ++
Sbjct: 205 SACREGELAAAERLVDEMTRRGVAPNAVTYALLMQGLCDAGRYD---DAKKLLFDM--EY 259
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 373
+ QP+V Y +L+ CA + L + K+ ++ ++ ++ +R L
Sbjct: 260 RDCQPDVANYGVLMS----ACAACGDADGVKGLISDMRKRKMKPDDASY----NVLIRCL 311
Query: 374 CREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEI 428
C GR+ E AL M + P A YR L+ E + +LG +
Sbjct: 312 CDAGRVDEAHRALVEMQLKDGTAPSAA-----TYRVLLDGCCE--ARDFDLGLRV 359
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 7/254 (2%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L+ H P +++ + A S +FH L+ + NG + A L GV
Sbjct: 98 LIDHLGAASRPDAALLVFRAVPAFCSHSNATFHALLHSLVCNGRVDAARDMLPEAPKLGV 157
Query: 136 RPLHETL-IALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANK 194
R + I L + G + + + + + + LV R L A +
Sbjct: 158 RTNAVSYNIILKGVCHRDGFSGARVVLDEMLARGVRPTVVTFNTLVGSACREGELAAAER 217
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+ + G+ Y L++ C AG + +A ++ ++ME ++ L+S A
Sbjct: 218 LVDEMTRRGVAPNAVTYALLMQGLCDAGRYDDAKKLLFDMEYRDCQPDVANYGVLMSACA 277
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
CG + +M + MKPD +YN +I+ A D L+ M ++D
Sbjct: 278 ACGDADGVKGLISDMR--KRKMKPDDASYNVLIRCLCDAGRVDEAHRA--LVEMQLKDGT 333
Query: 315 RLQPNVKTYALLVE 328
P+ TY +L++
Sbjct: 334 --APSAATYRVLLD 345
>gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana]
Length = 815
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 81/180 (45%), Gaps = 8/180 (4%)
Query: 169 NYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
NY R + +++ R+ +++ A +F K + E YD +I +AG A
Sbjct: 138 NYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWA 197
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
+ + +M A + +N+L++ + G A + M ++ + PD T+N V+
Sbjct: 198 MNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMT--DNGVGPDLVTHNIVL 255
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
AY Y + EL+ +++P+ T+ +++ C +K ++A+ F +++
Sbjct: 256 SAYKSGRQYSKALSYFELM-----KGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMR 310
Score = 40.0 bits (92), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 82/209 (39%), Gaps = 15/209 (7%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+A GL P S++ L+ AY ++G A+ L G+ P + L +G
Sbjct: 346 MVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQ 405
Query: 155 ATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
K E+ M K + Y+ L++ N +L +A ++F + + G++
Sbjct: 406 PGKAKEVFLMMRKERRKPNVVTYN------ALIDAYGSNGFLAEAVEIFRQMEQDGIKPN 459
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
++A ++ N + ++ G T +N + E A A ++
Sbjct: 460 VVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQ 519
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESY 296
+M + +K D+ T+ +I R Y
Sbjct: 520 SMR--KKKVKADSVTFTILISGSCRMSKY 546
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 114/265 (43%), Gaps = 16/265 (6%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
F+ L Q+ A +V D+ M+ G P +++ ++ + NG+ + A + + +
Sbjct: 308 FVHGLCQNGHVSHALKVMDL---MLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 364
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEIL--AAMEKINYDIRQAWLILVEELVRNKYL 189
G P T L S+ + L++ ++ ++ D+ + IL+ L +
Sbjct: 365 DRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDV-YTFNILINALCKVGDP 423
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
++F G + Y+++I C G NAL++ EME+ G +T +N +
Sbjct: 424 HLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTI 483
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ E A F+ M+ + T+N +I +A+ R+ D EL+ M
Sbjct: 484 IDALCKKMRIEEAEEVFDQMD--AQGISRSAVTFNTLIDGLCKAK---RIDDATELIEQM 538
Query: 310 VEDHKRLQPNVKTYALLVECFTKYC 334
V++ LQPN TY ++ T YC
Sbjct: 539 VKEG--LQPNNITYNSIL---THYC 558
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 107/281 (38%), Gaps = 46/281 (16%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ ++ GLSP +F+ L+ A GD + + S+G P T L
Sbjct: 393 DLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHL 452
Query: 150 GSKGLATKGLEILAAMEK-------INYD-----------IRQA---------------- 175
S G L++L ME + Y+ I +A
Sbjct: 453 CSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSA 512
Query: 176 --WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ L++ L + K ++DA ++ + K GL+ + Y+ ++ CK G+ A +I
Sbjct: 513 VTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILET 572
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M A G + L++ G +VA M ++P + YN VIQ+ R
Sbjct: 573 MTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRI--KGIRPTPKAYNPVIQSLFRR 630
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
+ ++D L M E + P+ TY ++ F C
Sbjct: 631 ---NNLRDALNLFREMTEVGE--PPDALTYKIV---FRSLC 663
>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
[Vitis vinifera]
Length = 811
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 112/271 (41%), Gaps = 18/271 (6%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ ++R + +V+ +M G P +++ L+ AY +G E A+ + + G++P
Sbjct: 316 YGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPD 375
Query: 139 HETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVF 196
T L F G ++I M E +I ++ R K+ E KVF
Sbjct: 376 VFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTE-MMKVF 434
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
++ +++ + G S + EM+ AG + FN L+S + C
Sbjct: 435 EDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRC 494
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVEDHKR 315
G + A A ++ M E + PD +YN V+ A R + + + V AE+ R
Sbjct: 495 GSFDQAMAVYKRML--EAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEM------KDGR 546
Query: 316 LQPNVKTYALLVECFT------KYCAVTEAI 340
+PN TY L+ + + CA+ E I
Sbjct: 547 CKPNELTYCSLLHAYANGKEIERMCALAEEI 577
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 128/310 (41%), Gaps = 26/310 (8%)
Query: 45 RQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGP 104
R +K + LL NGS+++ + + L + R A +++++ G
Sbjct: 154 RNRKESELLL--NGSIIA--------VIISILGKGGRVSAAA---SLLHNLCKDGFDVDV 200
Query: 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA-TKGLEILA 163
++ ++ A+T NG + A+ K+ G +P T + ++G G+ K + ++
Sbjct: 201 YAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVD 260
Query: 164 AMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKA 221
M+ I D + L+ R E+A V G Y+ ++ K+
Sbjct: 261 RMKSAGIAPD-SYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKS 319
Query: 222 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 281
A+E+ EME G + +N L+S A G+ E A M E +KPD
Sbjct: 320 RRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMV--EKGIKPDVF 377
Query: 282 TYNCVIQAYTRA-ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
TY ++ + +A + VQ E+ ++ +PN+ T+ L++ TE +
Sbjct: 378 TYTTLLSGFEKAGKDKAAVQIFEEM------RNEGCKPNICTFNALIKMHGNRGKFTEMM 431
Query: 341 RHFRALQNYE 350
+ F ++ ++
Sbjct: 432 KVFEDIKTFQ 441
Score = 40.0 bits (92), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 12/189 (6%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDA 192
G P TL A+ ++G + + K EIL M++ + + L+ R+ E +
Sbjct: 616 GFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERS 675
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
++ G+R Y+ +I C+ G +A + EM +G +N ++
Sbjct: 676 EEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIAS 735
Query: 253 QATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
A + A M ++G KP+ TYN ++ Y + D M V
Sbjct: 736 YAADSMFVEAIDVVCYMIKHG---CKPNQSTYNSIVDWYCKLNRRDEAS-------MFVN 785
Query: 312 DHKRLQPNV 320
+ ++L P++
Sbjct: 786 NLRKLDPHI 794
>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
Length = 1438
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 116/280 (41%), Gaps = 23/280 (8%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L H R RD V +I +M AG P + L+ YT G+ + + L AG+
Sbjct: 895 LCHHNRFRD---VELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGL 951
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANK 194
P +T L ++ +G +L M K + Q++ L+ + + E A++
Sbjct: 952 EPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQ 1011
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+F + IY +M+ AG+HS A + M+ G T + L++
Sbjct: 1012 IFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYG 1071
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
T G P A N++ ++ T Y+ V AY + Y+ +LL M K
Sbjct: 1072 TAGQPREAENVLNNLKSSS--LEVSTLPYSTVFDAYLKNGDYN--HGTTKLLEM-----K 1122
Query: 315 R--LQPNVKTYALLVECFTKYCAVTE----AIRHFRALQN 348
R ++P+ + + CF + ++ E AI ++LQ+
Sbjct: 1123 RDGVEPDHQVWT----CFIRAASLCEQTADAILLLKSLQD 1158
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A +VFLR A G AT ++++ M+ ++G +A ++ M G FN L++
Sbjct: 207 AEEVFLRFAGEG--ATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLIN 264
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
++ G A E + ++PD TYN +I A +++ + ++D + M+
Sbjct: 265 ARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSN---LEDAVTVFEDMIA 321
Query: 312 DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
R P++ TY +V + EA R FR L
Sbjct: 322 SECR--PDLWTYNAMVSVHGRCGKAEEAERLFREL 354
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/229 (18%), Positives = 93/229 (40%), Gaps = 7/229 (3%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H R A + +++ G P +++ L+ A+ G+ + H+ ++ + AG +
Sbjct: 338 HGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKN 397
Query: 139 HETLIALARLFGSKG---LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195
T + ++G G LA + + AM + + ++++ L + + +A KV
Sbjct: 398 EITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAV--TYTVMIDSLGKMNRIAEAGKV 455
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
GL+ T + +I K G ++A M A+G + +L A
Sbjct: 456 LEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFAR 515
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
G E + M D +PD + Y ++ A + + + +++V +
Sbjct: 516 SGDTEKMLCLYRKMM--NDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQ 562
>gi|413921612|gb|AFW61544.1| hypothetical protein ZEAMMB73_526638 [Zea mays]
Length = 456
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 89/225 (39%), Gaps = 12/225 (5%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM- 165
++ L+ A NG+ GA L+R GV P T L + + G + L M
Sbjct: 182 YNALLDALCANGNFTGAYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMA 241
Query: 166 -EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
+ +R L LV+ LVR +LE A LR K G+ ++ + C AGD
Sbjct: 242 GRGLRPPVRGRDL-LVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDV 300
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
A+ + + + G + +L A G E AF F ED +P Y
Sbjct: 301 DFAVSLLADASSRGLCPDISTYKVMLPAVAKVGKIEEAFRLFYAAV--EDGHRPFPSLYA 358
Query: 285 CVIQAYTRAESYDRVQDVAELLG-MMVEDHKRLQPNVKTYALLVE 328
+I+A +A R D G M + H PN Y +LV+
Sbjct: 359 AIIKALCKA---GRFADAFAFFGDMKTKGHP---PNRPVYVMLVK 397
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 96/257 (37%), Gaps = 18/257 (7%)
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRG 199
T A+ +G L + +E+ + + + + L++ L N A K+ R
Sbjct: 146 TFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTGAYKLLRRM 205
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
A+ G+ + ++ C AG A +M G + L+ G
Sbjct: 206 ARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVRGRDLLVDGLVRAGHL 265
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR-LQP 318
E A A M ++ + PD T+N + +A A DV + ++ + R L P
Sbjct: 266 EQAKAFALRMT--KEGILPDVATFNSLAEALCNA------GDVDFAVSLLADASSRGLCP 317
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
++ TY +++ K + EA R F A E G + F + ++ALC+ GR
Sbjct: 318 DISTYKVMLPAVAKVGKIEEAFRLFYA--AVEDGHR------PFPSLYAAIIKALCKAGR 369
Query: 379 IIELLEALEAMAKDNQP 395
+ M P
Sbjct: 370 FADAFAFFGDMKTKGHP 386
>gi|356541205|ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Glycine max]
Length = 768
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 22/197 (11%)
Query: 197 LRGAKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL-SCQA 254
++G G A D Y+ +I C+ G +A+ + E+ + F + +L+ +C
Sbjct: 238 MKGGNKGFVAPDLCTYNSLITALCRLGKVDDAITVYEELNGSAHQPDRFTYTNLIQACSK 297
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
T + E A F M+ + +PDT YN ++ + +A +V + +L MV++
Sbjct: 298 TYRM-EDAIRIFNQMQ--SNGFRPDTLAYNSLLDGHFKAT---KVMEACQLFEKMVQEGV 351
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL--SLYLRA 372
R P+ TY +L+ R+ RA Y L +G F D + S+ +
Sbjct: 352 R--PSCWTYNILIHGL---------FRNGRAEAAYTMFCD-LKKKGQFVDGITYSIVVLQ 399
Query: 373 LCREGRIIELLEALEAM 389
LC+EG++ E L+ +E M
Sbjct: 400 LCKEGQLEEALQLVEEM 416
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 104/255 (40%), Gaps = 19/255 (7%)
Query: 102 PGPRSFHGLVVAYTLNG---DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
P P ++ ++ + G D +HS+ + AGV +L L R F
Sbjct: 70 PSPAAYSVILRTLSREGFYSDIPSLLHSMTQ---AGVVLDPHSLNHLLRSFIISSNFNLA 126
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR--GAKGGLRATDEIYDLMIA 216
L++L ++ ++ D + L+ L+ L A +F + GA ++ L++A
Sbjct: 127 LQLLDYVQHLHLDPSPIYNSLLVALLEKNQLTLALSIFFKLLGAVDS-KSITACNQLLVA 185
Query: 217 EDCKAGDHSNALEIAYEM--EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG-E 273
+ D E ++ E G T+ +N + G FA F+ M+ G +
Sbjct: 186 --LRKADMRVEFEQVFQRLREKRGFSFDTWGYNVCIHAFGCWGDLATCFALFKEMKGGNK 243
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
++ PD TYN +I A R D V E L QP+ TY L++ +K
Sbjct: 244 GFVAPDLCTYNSLITALCRLGKVDDAITVYEELNGSAH-----QPDRFTYTNLIQACSKT 298
Query: 334 CAVTEAIRHFRALQN 348
+ +AIR F +Q+
Sbjct: 299 YRMEDAIRIFNQMQS 313
>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
Length = 859
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 38/233 (16%)
Query: 133 AGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLED 191
AG P T L + G +++ M+++ + +V L + +L
Sbjct: 430 AGYEPDRVTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAA 489
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A K+F + G Y++MIA KA ++ N +++ +M+ AG ++ ++
Sbjct: 490 AYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVME 549
Query: 252 CQATCGIPEVAFATFENME---------YG-----------------------EDYMKPD 279
CG + A A F M YG +D ++P+
Sbjct: 550 VLGHCGHLDEAEAVFIEMRHDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPN 609
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
T N ++ A+ + +R QD +L M+ + L P+++TY LL+ C T+
Sbjct: 610 VPTCNSLLSAFLKI---NRFQDAYSVLQNMLA--QGLVPSLQTYTLLLSCCTE 657
>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 825
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 131/300 (43%), Gaps = 32/300 (10%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSK---GLA 155
G+ P ++ L+ + G+ E A+ L E++A R L+ + + ++ GL
Sbjct: 270 GVLPTVETYGALINGFCKAGEFE-AVDQLLTEMAA--RGLNMNVKVFNNVIDAEYKYGLV 326
Query: 156 TKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
T+ E+L M ++ DI + I++ + +E+A+++ + + GL Y
Sbjct: 327 TEAAEMLRRMAEMGCGPDI-TTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTP 385
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
++ CK GD+ A + + + G + + + G +VA E M E
Sbjct: 386 LMHAYCKKGDYVKASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMM--E 443
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
+ PD + YN ++ + R+ + LL M++ + +QP+V +A L++ F +
Sbjct: 444 KGVFPDAQIYNILMSGLCKK---GRIPAMKLLLSEMLD--RNVQPDVYVFATLIDGFIRN 498
Query: 334 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP----LSLYLRALCREGRIIELLEALEAM 389
+ EAI+ F KV+ +G DP + ++ C+ G++ + L L M
Sbjct: 499 GELDEAIKIF----------KVIIRKGV--DPGIVGYNAMIKGFCKFGKMTDALSCLNEM 546
>gi|299116347|emb|CBN76149.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1139
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 89/238 (37%), Gaps = 9/238 (3%)
Query: 97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156
A G+ P +++ + A G+ + A + G++P + + G
Sbjct: 612 AGGVRPDVITYNSAIAACASGGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPE 671
Query: 157 KGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+ L +L AME N D+ A ++ L +A + G+ + Y
Sbjct: 672 EALRLLRAMEASNVVPDV-IAMTACMDALAAGGKWSEAITILDEMRSKGVTPNERTYKAA 730
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY--G 272
I + G ALE+ +E AT +N + T G A A E M+ G
Sbjct: 731 IQACGRGGQWQRALELLSRLENRASGATVQEYNCAMMACVTGGESGRALALLEQMKANKG 790
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY-ALLVEC 329
PD TY I A + +DR LL M E R QPN+++Y A + C
Sbjct: 791 GVNAGPDMVTYTSAIMACSSTGKWDRAL---SLLDEMREAGPRTQPNIRSYTAAIAAC 845
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 7/151 (4%)
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+A K F + G+ Y ++I CK G +E+ M G +++ FN L+
Sbjct: 313 EALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALI 372
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
G+ E A ++M+ + + P++ TYN +I + R +S DR LL M
Sbjct: 373 DGYCKRGMMEDAICVLDSMKLNK--VCPNSRTYNELICGFCRKKSMDRAM---ALLNKMY 427
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
E+ +L PN+ TY L+ K V A R
Sbjct: 428 EN--KLSPNLVTYNTLIHGLCKARVVDSAWR 456
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 139/356 (39%), Gaps = 55/356 (15%)
Query: 127 LKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR---QAWLILVEEL 183
KR L G P T L +G + ++ M K +D + + IL+EE+
Sbjct: 528 FKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGK--FDAKPTVHTYTILIEEI 585
Query: 184 VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATT 243
+R + AN + G + Y I C+ G A E+ +++ G + +
Sbjct: 586 LRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDS 645
Query: 244 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR----- 298
F ++ L++ G + AF M + +P +TY+ ++ + E Y++
Sbjct: 646 FIYDVLVNAYGCIGQLDSAFGVLIRM--FDTGCEPSRQTYS-ILLKHLIFEKYNKEGMGL 702
Query: 299 -------------VQDVA--ELLGMMVED--HKRLQPNVKTYALLVECFTKYCAVTEAIR 341
+ +A E++ M+ E + PNV TY+ L++ K ++ A R
Sbjct: 703 DLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFR 762
Query: 342 HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM 401
F ++ E G N N SL L + C+ G E L L++M + N +
Sbjct: 763 LFNHMK--ESGISPSENIHN-----SL-LSSCCKLGMHEEALRLLDSMMEYNHLAHLES- 813
Query: 402 ILSRKYRTLVSSWIEP-LQEEAE--------LGYEIDYIARYISEGGLTGERKRWV 448
Y+ LV E QE+AE GY D + + GL RK +V
Sbjct: 814 -----YKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLV--RKGYV 862
Score = 39.3 bits (90), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 7/167 (4%)
Query: 173 RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
++ + ++ L + +E A++VF + A + +Y +I CKA S+A +
Sbjct: 470 QRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFK 529
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
M G + FN LL G E A + + M G+ KP TY +I+ R
Sbjct: 530 RMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVM--GKFDAKPTVHTYTILIEEILR 587
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+DR L M+ QPNV TY ++ + + + EA
Sbjct: 588 ESDFDRAN---MFLDQMISS--GCQPNVVTYTAFIKAYCRQGRLLEA 629
>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 805
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 111/262 (42%), Gaps = 23/262 (8%)
Query: 80 ARNRDAPRVNDV-IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP 137
A R R N +YD M AAG +P +++ L+ + GD A + + S G +P
Sbjct: 473 AYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKP 532
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRN---KYLEDA 192
++ +L +KG G+E A+EK Y +I +W+IL ++ N + LE
Sbjct: 533 -NDMSYSLLLQCHAKGGNAAGIE---AIEKEVYQGNIFPSWVILRTLVIANFKCRRLEGI 588
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
+ F G + I + M++ K G +S A+E+ +E G +N L+
Sbjct: 589 ERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDM 648
Query: 253 QATCGIPEVAFATFENME-------YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
A P A + + +KPD +YN VI + + +++ +
Sbjct: 649 YAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCKE---GLIKEAQRV 705
Query: 306 LGMMVEDHKRLQPNVKTYALLV 327
L M+ D + P V TY LV
Sbjct: 706 LSEMIADG--VAPCVITYHTLV 725
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 5/205 (2%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
I MI GL P +++ ++ AY G + A+ R G P T + + G
Sbjct: 346 CIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLG 405
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGG-LRATD 208
K LE+L M + R W L+ + + +E L G K +
Sbjct: 406 KKSRFAAMLEMLGEMSRSGCTPNRVTWNTLL-AVCGKRGMESYVTRVLEGMKSCKVELCR 464
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+ Y+ +I + G +NA ++ EM AAG +N LL+ + G A +
Sbjct: 465 DTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSK 524
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRA 293
M+ + KP+ +Y+ ++Q + +
Sbjct: 525 MK--SEGFKPNDMSYSLLLQCHAKG 547
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/243 (17%), Positives = 94/243 (38%), Gaps = 8/243 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M AG P +++ L +Y G ++ A + + G+ P T + +G
Sbjct: 311 VLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYG 370
Query: 151 SKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+ G + L + M+K + + +++ L + ++ ++ G
Sbjct: 371 NAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRV 430
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ ++A K G S + M++ +N L+ CG AF ++ M
Sbjct: 431 TWNTLLAVCGKRGMESYVTRVLEGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEM 490
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
P TYN ++ +R + + + + + +PN +Y+LL++C
Sbjct: 491 TAAG--FAPCLTTYNALLNVLSRQGDWTAARSIVSKM-----KSEGFKPNDMSYSLLLQC 543
Query: 330 FTK 332
K
Sbjct: 544 HAK 546
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ ++ KAG+++ AL + EME AG +N L A G + A + M
Sbjct: 292 YNALLQVFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTM- 350
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
G+ + P+T TYN ++ AY A +V + L M ++ P TY L++
Sbjct: 351 IGKGLL-PNTFTYNTIMTAYGNA---GKVDEALALFDRMKKNG--FIPYTNTYNLVLGML 404
Query: 331 TK 332
K
Sbjct: 405 GK 406
>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 830
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 20/238 (8%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P +++ L Y G + M + S GV P T + +G G L +
Sbjct: 355 PDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRL 414
Query: 162 LAAMEKI----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+ M+ + N + L ++ + R ED KV G ++ M+A
Sbjct: 415 FSKMKDLGCAPNVYTYNSVLAMLGKKSRT---EDVIKVLCEMKLNGCAPNRATWNTMLAV 471
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE---D 274
+ G H+ ++ EM+ G FN L+S A CG EV A YGE
Sbjct: 472 CSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCG-SEVDSAKM----YGEMVKS 526
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
P TYN ++ A + + V + + K +PN +Y+LL+ C++K
Sbjct: 527 GFTPCVTTYNALLNALAHRGDWKAAESVIQDM-----QTKGFKPNETSYSLLLHCYSK 579
Score = 46.6 bits (109), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 113/276 (40%), Gaps = 12/276 (4%)
Query: 53 LLSTNGSVVSAAEQGLRLIF-MEELMQHARNRDAPR-VNDVIYDMIAA-GLSPGPRSFHG 109
LL G + ++Q LRL + ELM R++ + ++D+I S R++
Sbjct: 162 LLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTT 221
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA-TKGLEILAAMEKI 168
++ AY +G ++ A+ + G+ P T + ++G G + + LE+L M
Sbjct: 222 ILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSK 281
Query: 169 NYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
+ + ++ R L++A K G + +Y+ M+ KAG ++ A
Sbjct: 282 GLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEA 341
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
L I EME + +N L + G + A + M + P+ TY VI
Sbjct: 342 LSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMT--SKGVMPNAITYTTVI 399
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
AY +A R D L M + PNV TY
Sbjct: 400 DAYGKA---GREDDALRLFSKMKD--LGCAPNVYTY 430
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 108/253 (42%), Gaps = 51/253 (20%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+ +G +P +++ L+ A GD + A ++ + G +P +ET +L SK
Sbjct: 522 EMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKP-NETSYSLLLHCYSKA 580
Query: 154 LATKGLEILAAMEKINYD--IRQAWLILVEELVRN---KYLEDANKVFLRGAKGGLRATD 208
+G+E +EK YD + +W++L ++ N ++L + F + K G +
Sbjct: 581 GNVRGIE---KVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDL 637
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+ + M++ + S A E+ HF H CG
Sbjct: 638 VVINSMLSMFSRNKMFSKAREM-------------LHFIH------ECG----------- 667
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
++P+ TYNC++ Y R + + ++V + + V +P+V +Y +++
Sbjct: 668 -------LQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVP-----EPDVVSYNTVIK 715
Query: 329 CFTKYCAVTEAIR 341
F + + EAIR
Sbjct: 716 GFCRKGLMQEAIR 728
Score = 39.3 bits (90), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
E++ G T +N +L GI A + + ME ++ PD+ TYN + Y R
Sbjct: 312 ELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEME--DNNCPPDSITYNELAATYVR 369
Query: 293 AESYDRVQDVAELLGMMVED---HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
A D GM V D K + PN TY +++ + K +A+R F +++
Sbjct: 370 AGFLDE--------GMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKD 420
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 143/369 (38%), Gaps = 62/369 (16%)
Query: 65 EQG-LRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGA 123
EQG L + L ++ + A R+ + + A G +F L+ AY +G HE A
Sbjct: 231 EQGKLASAMISTLGRYGKVTIAKRIFETAF---AGGYGNTVYAFSALISAYGRSGLHEEA 287
Query: 124 MHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL-EILAAMEK-------INYD---- 171
+ G+RP T A+ G G+ K + + M++ I ++
Sbjct: 288 ISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLA 347
Query: 172 ------IRQAWLILVEELVRNKYLEDA---NKVFLRGAKGG-LRATDEI----------- 210
+ +A L +E+ + +D N + KGG + EI
Sbjct: 348 VCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMP 407
Query: 211 ----YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y +I KAG AL + EM G +N LLS G E A
Sbjct: 408 NVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDIL 467
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
M +K D TYN ++ Y + YD V+ V M +H + PN+ TY+ L
Sbjct: 468 REM--ASVGIKKDVVTYNALLGGYGKQGKYDEVKKV---FTEMKREH--VLPNLLTYSTL 520
Query: 327 VECFTKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRALCREGRIIELL 383
++ ++K EA+ FR ++ G + VL+ S + ALC+ G + +
Sbjct: 521 IDGYSKGGLYKEAMEIFREFKS--AGLRADVVLY---------SALIDALCKNGLVGSAV 569
Query: 384 EALEAMAKD 392
++ M K+
Sbjct: 570 SLIDEMTKE 578
Score = 39.3 bits (90), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 107/240 (44%), Gaps = 16/240 (6%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
S++ L+ YT G E A+ L+ S G++ T AL +G +G + ++ M
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM 505
Query: 166 EKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
++ + + L++ + ++A ++F GLRA +Y +I CK G
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLV 565
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA--FATFENMEYGEDYMKPDTET 282
+A+ + EM G +N ++ + + ++ ++ + + TET
Sbjct: 566 GSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTET 625
Query: 283 -YNCVIQAYTR--AESYDR--------VQDVAELLGMMVEDHK-RLQPNVKTY-ALLVEC 329
N VIQ + + ES +R +Q+++ +L + + H+ ++PNV T+ A+L C
Sbjct: 626 EGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNAC 685
>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
Length = 629
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 21/223 (9%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ LV L+ + A ++F G +Y MI+ +AG +A +A M+
Sbjct: 321 YSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMK 380
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
AG T +N L++ A+ + M+ E ++PD TYN ++ +A
Sbjct: 381 EAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMK--EVGIRPDVCTYNTLLSGSCKAGD 438
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG--- 352
+ V ELLG M++D QP+V T+ LV + K + EA+R R++ E G
Sbjct: 439 FAAVD---ELLGKMIDDG--CQPSVITFGTLVHGYCKVGKIDEALRILRSMD--ESGIHP 491
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP 395
V++N + LC+ G + +E + M + + P
Sbjct: 492 NNVIYNT---------LIDFLCKRGDVDLAIELFDEMKEKSVP 525
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)
Query: 108 HGLVVAYTLNGDHEG-AMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
+ +V L+ ++ G AM ++S G P + G + ++M+
Sbjct: 321 YSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMK 380
Query: 167 KINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
+ + + +A+ IL+ R K L +A ++ + G+R Y+ +++ CKAGD +
Sbjct: 381 EAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFA 440
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
E+ +M G + F L+ G + A +M+ E + P+ YN
Sbjct: 441 AVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMD--ESGIHPNNVIYNT 498
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+I + D EL M E K + NV T+ L++
Sbjct: 499 LIDFLCKRGDVDL---AIELFDEMKE--KSVPANVTTFNALLK 536
>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A +L+ L + + KV+ + + G+ I++++I CK+GD A ++ E
Sbjct: 188 HACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNE 247
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
ME+ F +N L+S G+ A + ME G + PD TYN +I + R
Sbjct: 248 MESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGG--VSPDIVTYNSLIYGFCR- 304
Query: 294 ESYDRVQDVAELLGMM-VEDHKRLQPNVKTY 323
V D+ E L + V + + L P V TY
Sbjct: 305 ----EVNDLEEALRLREVMEVEGLHPGVVTY 331
Score = 40.0 bits (92), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 145/377 (38%), Gaps = 68/377 (18%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
A+ R V V M+ G+ P F+ L+ A +GD E A L S + P
Sbjct: 198 AKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDL 257
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK-------INY------------DIRQAWLI-- 178
T L L+ KG+ + L I ME+ + Y D+ +A +
Sbjct: 258 FTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLRE 317
Query: 179 ----------------LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAG 222
++ +L ++DAN++ ++ + + + +I CK G
Sbjct: 318 VMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIG 377
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA---TFENMEYGEDYMKPD 279
D +A+++ +M AG F F L+ C + EV A FE ++ G P
Sbjct: 378 DMGSAMKVKKKMLEAGLKPDQFTFKALI--HGFCKLHEVDSAKEFLFEMLDAG---FSPS 432
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
TY+ ++ +Y ++ + V + + L K L ++ Y L+ K + A
Sbjct: 433 YSTYSWLVDSYYDQDNKEAVIRLPDELS-----RKGLFVDISVYRALIRRLCKIDKIESA 487
Query: 340 IRHFRALQNYEG--GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
R F +Q +G G V++ + Y +A G+ I + L+ M K
Sbjct: 488 ERIFTLMQG-KGMKGDSVVYTSLAYA-----YFKA----GKAIAASDMLDEMDKR----- 532
Query: 398 PRAMILSRKYRTLVSSW 414
R MI + YR +S+
Sbjct: 533 -RLMITLKIYRCFSASY 548
>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 16/223 (7%)
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYL 189
+S G+ P L + +GL +K ++L M + + I + +L R+ +
Sbjct: 191 ISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKM 250
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
E+A K+F K G+ Y MI CK G+ A + E+ A + F L
Sbjct: 251 EEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTL 310
Query: 250 LSCQATCGIPEVAFA--TFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
+ C E+ A F +M ++G D P+ YNC+I + ++ ++ E +
Sbjct: 311 V--DGFCKARELVTARSLFVHMVKFGVD---PNLYVYNCLIHGHCKS------GNMLEAV 359
Query: 307 GMMVE-DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
G++ E + L P+V TY +L+ V EA R F+ ++N
Sbjct: 360 GLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKN 402
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LV+ + + L A +F+ K G+ +Y+ +I CK+G+ A+ + EME+
Sbjct: 310 LVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLN 369
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFAT--FENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
F + L++ C +VA A F+ M+ + + P + TYN +I Y + +
Sbjct: 370 LSPDVFTYTILIN--GLCIEDQVAEANRLFQKMK--NERIFPSSATYNSLIHGYCKEYNM 425
Query: 297 DRVQDV-AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
++ D+ +E+ VE PN+ T++ L++ YC V
Sbjct: 426 EQALDLCSEMTASGVE------PNIITFSTLID---GYCNV 457
Score = 46.2 bits (108), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 30/295 (10%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+++ A L P F LV + + A + GV P L G
Sbjct: 294 EILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSG 353
Query: 154 LATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
+ + +L+ ME +N D+ + IL+ L + +AN++F + + + Y
Sbjct: 354 NMLEAVGLLSEMESLNLSPDVF-TYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATY 412
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+ +I CK + AL++ EM A+G F+ L+ C + ++ A E
Sbjct: 413 NSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLI--DGYCNVRDIKAAMGLYFEM 470
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ PD TY +I A+ + + +++ L M+E + PN T+A LV+ F
Sbjct: 471 TIKGIVPDVVTYTALIDAHFKEAN---MKEALRLYSDMLE--AGIHPNDHTFACLVDGFW 525
Query: 332 KYCAVTEAIRHF------RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 380
K ++ AI + R+ N+ G T ++ EG LC+ G I+
Sbjct: 526 KEGRLSVAIDFYQENNQQRSCWNHVGFTCLI--EG------------LCQNGYIL 566
>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 690
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 173 RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
R A++ ++E L R +A ++ + + G+ +Y+ +++ K S+ ++
Sbjct: 446 RDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYE 505
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+M+ G F +N L+S G + A FE +E + KPD +YN +I +
Sbjct: 506 KMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSD--CKPDIISYNSLINCLGK 563
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
D A + + ++D K L P+V TY+ L+ECF K
Sbjct: 564 NGDVDE----AHMRFLEMQD-KGLNPDVVTYSTLIECFGK 598
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 19/263 (7%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+ G +P +++ ++ A + +G + A+ + RP T + + ++G
Sbjct: 334 EMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEFTYSIILNVLVAEG 393
Query: 154 LATKGLEILAAMEK-INYDIRQAWLILVEELVRNKYLEDANKVFLR---GAKGGLRATDE 209
+ E+L K IN I + LV L + + +A+++F GG R +
Sbjct: 394 QLGRLDEVLEVSNKFINKSI---YAYLVRTLSKLGHSSEAHRLFCNMWSFHDGGDR---D 447
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y M+ C+ G A+E+ ++ G T +N +LS +E M
Sbjct: 448 AYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKM 507
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ +D PD TYN +I + R +V E L + +P++ +Y L+ C
Sbjct: 508 K--QDGPFPDIFTYNILISSLGRVGKVKEAVEVFEEL-----ESSDCKPDIISYNSLINC 560
Query: 330 FTKYCAVTEAIRHFRALQNYEGG 352
K V EA H R L+ + G
Sbjct: 561 LGKNGDVDEA--HMRFLEMQDKG 581
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++I+ + G A+E+ E+E++ +N L++C G + A F +E
Sbjct: 519 YNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRF--LE 576
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+ + PD TY+ +I+ + + D+V+ L M+ + PN+ TY +L++C
Sbjct: 577 MQDKGLNPDVVTYSTLIECFGKT---DKVEMARSLFDRMIT--QGCCPNIVTYNILLDCL 631
Query: 331 TKYCAVTEAIRHFRALQ 347
+ E + + L+
Sbjct: 632 ERAGRTAETVDLYAKLR 648
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 20/260 (7%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
++R + ++ +M A L P + L+ + G+ + A +K ++AGV+P
Sbjct: 198 CKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNK 257
Query: 140 ETLIALARLFGSKGLATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDA 192
T L R G + +L M + I Y++ ++E R+ +DA
Sbjct: 258 ITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNL------IIEGHFRHHNKKDA 311
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
++ G+ Y +MI C++G+ A ++ EM G F + L+S
Sbjct: 312 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 371
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G +A F+ M + + PD YN +I ++ RV++ + M E
Sbjct: 372 YCREGNVSLACEIFDKMT--KVNVLPDLYCYNSLIFGLSKV---GRVEESTKYFAQMQE- 425
Query: 313 HKRLQPNVKTYALLVECFTK 332
+ L PN TY+ L+ + K
Sbjct: 426 -RGLLPNEFTYSGLIHGYLK 444
Score = 46.2 bits (108), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 134/340 (39%), Gaps = 23/340 (6%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+++ L + ++ D +V+ M+ G+ R + L+ + +G+ E A L
Sbjct: 468 VIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSE 527
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKY 188
G P +L K IL M K D + L++ L ++
Sbjct: 528 IEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGD 587
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+ A VF GL Y +I CK GD SNA + EM A G F ++
Sbjct: 588 ISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSV 647
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMK--PDTETYNCVIQAYTRAESYDRVQDVAELL 306
L + ++ G E A E M +++ ++N ++ + + ++Q+ +LL
Sbjct: 648 LTTGCSSAGDLEQAMFLIEEM-----FLRGHASISSFNNLVDGFCKR---GKMQETLKLL 699
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD-- 364
+++ + L PN T ++ ++ ++E F LQ + H F D
Sbjct: 700 HVIMG--RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMI 757
Query: 365 -----PLSL---YLRALCREGRIIELLEALEAMAKDNQPV 396
PL + +R C+EG + + L + + + P+
Sbjct: 758 NQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPM 797
Score = 46.2 bits (108), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 21/219 (9%)
Query: 179 LVEELVRNKYLEDANKV--FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
L+++L+R + KV F+ GA G+ Y +I CK + A ++ EM
Sbjct: 88 LLKDLLRADAMALLWKVREFMVGA--GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRE 145
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENME-YGEDYMKPDTETYNCVIQAYTRAES 295
G T +N L++ G E AF ++ME YG + PD TY +I ++
Sbjct: 146 RGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYG---LVPDGFTYGALINGLCKSR- 201
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
R + LL M L+PNV YA L++ F + EA + + + V
Sbjct: 202 --RSNEAKALLDEM--SCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV----AAGV 253
Query: 356 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 394
N+ + + +R LC+ G++ L+ M +D+
Sbjct: 254 QPNKITYDN----LVRGLCKMGQMDRASLLLKQMVRDSH 288
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 90/242 (37%), Gaps = 41/242 (16%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL P ++ GL+ Y NGD E A ++R L G++P
Sbjct: 427 GLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKP--------------------- 465
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
D+ ++ L+E ++ +E + F G+ + IY ++I
Sbjct: 466 -----------NDV--IYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNL 512
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
+G+ A + E+E G + ++ L+S E AF + M + + P
Sbjct: 513 SSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMS--KKGVDP 570
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
+ YN +I ++ ++V + K L PN TY L++ K ++
Sbjct: 571 NIVCYNALIDGLCKSGDISYARNVFNSI-----LAKGLVPNCVTYTSLIDGSCKVGDISN 625
Query: 339 AI 340
A
Sbjct: 626 AF 627
>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 112/272 (41%), Gaps = 10/272 (3%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H R+ +++ DM+ + P +++ L+ A +G+ A+ K+ GV P
Sbjct: 180 HGRSGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPD 239
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVF- 196
T + + + K L M+ N L I++ L + E A +F
Sbjct: 240 LVTHNIILSAYKTGAQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFK 299
Query: 197 -LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+R + + +I G N + M A G +N L+ A+
Sbjct: 300 SMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYAS 359
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G+ + A + F ++ ++PD +Y ++ +Y R++ + ++V E MM D +
Sbjct: 360 HGMNKEALSVFNAIK--NSGLRPDVVSYTSLLNSYGRSQQPKKAREVFE---MMKRD--K 412
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
L+PN+ +Y +++ + + EA+ R ++
Sbjct: 413 LKPNIVSYNAMIDAYGSNGLLAEAVEVLREME 444
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 125/318 (39%), Gaps = 30/318 (9%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IALARLF 149
+I M+ G +P P F+ LV Y GD+ A R + G P + I + +
Sbjct: 328 IINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSIC 387
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRN--------KYLEDANKVFLRGAK 201
G + L E+L +EK+ ++ A +L + N E A ++ +
Sbjct: 388 GQEELPNA--ELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMR 445
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G Y +I C+A + + EM+ AG + + L+ G+ E
Sbjct: 446 KGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQ 505
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A + F+ M P+ TY ++ AY +++ + D+ MV+ PN
Sbjct: 506 ARSWFDEMR--SVGCSPNVVTYTALLHAYLKSKQLIQAHDI---FHRMVD--AACYPNAV 558
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV-LHNEGNFGDPLSL---------YLR 371
TY+ L++ K + +A + L G + + EGN D ++ +
Sbjct: 559 TYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGN--DTCTIAPNVVTYGALID 616
Query: 372 ALCREGRIIELLEALEAM 389
LC+ ++ + E L+AM
Sbjct: 617 GLCKAQKVSDAHELLDAM 634
Score = 46.2 bits (108), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 100/272 (36%), Gaps = 24/272 (8%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M + G SP ++ L+ AY + A R + A P T AL G
Sbjct: 512 EMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAG 571
Query: 154 LATKGLEILAAMEKINYDIRQAWLI-----------------LVEELVRNKYLEDANKVF 196
K E+ + + ++ + L++ L + + + DA+++
Sbjct: 572 EIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELL 631
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
G +YD +I CK G NA E+ M G + + + L+
Sbjct: 632 DAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKD 691
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G ++A M D P+ TY +I ++ ++ LL +M E K
Sbjct: 692 GRLDLAMKVLSEML--NDSCNPNVVTYTAMIDGLSKV---GEIEKALNLLSLMEE--KGC 744
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
PNV TY L++ K +++ F+ + +
Sbjct: 745 SPNVVTYTALIDGLGKTGKADASLKLFKQMNS 776
>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
Length = 961
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 36/194 (18%)
Query: 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAA 164
R+++ ++ A +G E A+ ++ L+AGV+P T AL +G KG K LEI
Sbjct: 382 RTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIF-- 439
Query: 165 MEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
+++R RG + + Y +I+ KAG
Sbjct: 440 ----------------RDMIR------------RGCERNVIT----YSSLISACEKAGRW 467
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
ALE+ +M FN L++ + G E A FE M+ KPD+ TY
Sbjct: 468 EMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQ--TQGCKPDSITYC 525
Query: 285 CVIQAYTRAESYDR 298
+I AY R + R
Sbjct: 526 GLITAYERGGQWRR 539
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/369 (21%), Positives = 138/369 (37%), Gaps = 62/369 (16%)
Query: 65 EQG-LRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGA 123
EQG L + L ++ + A R+ + + + G +F L+ AY +G HE A
Sbjct: 231 EQGKLASAMISTLGRYGKVTIAKRIFETAF---SGGYGNTVYAFSALISAYGRSGLHEEA 287
Query: 124 MHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEEL 183
+ G+RP T A+ G G+ K ++ +++ + Q I L
Sbjct: 288 ISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFK--QVAKFFDEMQRNCVQPDRITFNSL 345
Query: 184 V----RNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR 239
+ R E A +F + + Y+ ++ CK G A EI +M A
Sbjct: 346 LAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRI 405
Query: 240 MATTFHFNHLLSCQATCGIPEVAFATFENMEY---------------------------- 271
M ++ ++ A G + A F M Y
Sbjct: 406 MPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALD 465
Query: 272 -----GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+K D TYN ++ Y + YD V+ V M +H + PN+ TY+ L
Sbjct: 466 ILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKV---FAEMKREH--VLPNLLTYSTL 520
Query: 327 VECFTKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRALCREGRIIELL 383
++ ++K EA+ FR ++ G + VL+ S + ALC+ G + +
Sbjct: 521 IDGYSKGGLYKEAMEVFREFKS--AGLRADVVLY---------SALIDALCKNGLVGSAV 569
Query: 384 EALEAMAKD 392
++ M K+
Sbjct: 570 SLIDEMTKE 578
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 108/240 (45%), Gaps = 16/240 (6%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
S++ L+ YT G E A+ L+ S G++ T AL +G +G + ++ A M
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEM 505
Query: 166 EKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
++ + + L++ + ++A +VF GLRA +Y +I CK G
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLV 565
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA--FATFENMEYGEDYMKPDTET 282
+A+ + EM G +N ++ E + ++ ++ + + TET
Sbjct: 566 GSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSADYSNGGSLPFSSSALSELTET 625
Query: 283 -YNCVIQAYTR--AESYDR--------VQDVAELLGMMVEDHK-RLQPNVKTY-ALLVEC 329
N VIQ + + +E +R +Q+++ +L + + H+ ++PNV T+ A+L C
Sbjct: 626 EGNRVIQLFGQLTSEGNNRMTKDCKEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNAC 685
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 119/266 (44%), Gaps = 37/266 (13%)
Query: 152 KGLATKGLEILAAMEKINYDIRQ-------AWLILVEELVRNKYLEDANKVFLRGAKGGL 204
G+ +G +I A+E N +R ++ L+ L + A VF + + G
Sbjct: 171 NGVCNEG-KIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGC 229
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ Y+ +I CK ++A++ EM G +N ++ C + ++ A
Sbjct: 230 KPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIV--HGLCCLGQLNEA 287
Query: 265 T--FENMEYGEDYMKPDTETYNCVIQAYTRAESYDR-VQDVAELLGMMVEDHKRLQPNVK 321
T F+ ME ++ KPD TYN +I + + DR V D A+ L MV+ + + P+V
Sbjct: 288 TRLFKRME--QNGCKPDVVTYNIIIDSLYK----DRLVNDAADFLSEMVD--QGIPPDVV 339
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRALCREGR 378
TY ++ + EAIR F+ ++ + G K V +N + +LC++
Sbjct: 340 TYTTILHGLCYLGQLNEAIRLFKKME--QKGCKPDVVAYNT---------IIDSLCKDRL 388
Query: 379 IIELLEALEAMAKDNQPVPPRAMILS 404
+ + +E L M ++ +PP A+ S
Sbjct: 389 VNDAMEFLSEMV--DRGIPPNAVTYS 412
>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
Length = 845
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 9/226 (3%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL+P +F+ L++ G + A L+ +S G I L F G A
Sbjct: 455 GLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDAYF-RDGNAVGA 513
Query: 159 LEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
L+ M I A+ + L R + +A + F G+ + Y+ +I+
Sbjct: 514 LKCWDDMGNIGLQTDFIAFSAYINGLCRLDCVNEAYQAFAEMTSRGIVPNNITYNSIISA 573
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
CKAG+ + AL++ M +G + + N L+ C ++ ++ + +
Sbjct: 574 LCKAGNMTEALKLVQNMRQSGLVPDIYTSNILI--DGLCREGKLKMVDNLLLDMCSNGLT 631
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
PDT TYN +I AY RA+ + + M+V +P++ TY
Sbjct: 632 PDTVTYNTIINAYCRAQDMNSAMNFMN--KMLVAG---CEPDIFTY 672
>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Brachypodium distachyon]
Length = 637
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 96/210 (45%), Gaps = 10/210 (4%)
Query: 140 ETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFL 197
+ I++ + + G + +++L M + I+ DI + ++ L + K + + +F
Sbjct: 394 DAFISMLEVLCNSGKTLEAIDLLHMMPEKGIDTDIGM-YNMVFSALGKLKQVSFISTLFD 452
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ G+ Y++MI+ + G A + EMEA+ +N L++C G
Sbjct: 453 KMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNG 512
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+ A F+ M+ E PD TY+ +I+ + ++ ++V L M+ +
Sbjct: 513 DLDEAHILFKEMQ--EKGYDPDVFTYSTLIECFGKS---NKVDMACSLFDEMIAEG--CI 565
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
PN+ TY +L++C + EA +H+ ++
Sbjct: 566 PNIVTYNILLDCLERRGKTAEAHKHYETMK 595
>gi|356525958|ref|XP_003531588.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
chloroplastic-like [Glycine max]
Length = 630
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 3/199 (1%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G +P + L+ AY+ G+++ A ++ S G+ P L L +++ GL K
Sbjct: 241 GHTPNVYHYSSLINAYSACGNYKKADMLIQDMKSEGLVPNKVILTTLLKVYVKGGLFEKS 300
Query: 159 LEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+LA ++ + Y + + I ++ L + + +A +F K +R+ + +MI+
Sbjct: 301 RELLAELKSLGYAEDEMPYCIFMDGLAKAGQIHEAKLIFDEMMKNHVRSDGYAHSIMISA 360
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
C+A A ++A + E N +L G E T + M+ E +
Sbjct: 361 FCRAKLFREAKQLAKDFETTSNKYDLVILNSMLCAFCRVGEMERVMETLKKMD--ELAIN 418
Query: 278 PDTETYNCVIQAYTRAESY 296
P T++ +I+ + R + Y
Sbjct: 419 PGYNTFHILIKYFCREKMY 437
>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Vitis vinifera]
Length = 844
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 97/243 (39%), Gaps = 43/243 (17%)
Query: 121 EGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY---------- 170
E A K+ +G + T +L LF +KGL K E+ +ME
Sbjct: 266 EVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELM 325
Query: 171 -----------------------DIRQAWLI---LVEELVRNKYLEDANKVFLRGAKGGL 204
++R ++L+ LV+ + + L+ + KV++ GL
Sbjct: 326 IPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGL 385
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
R + +Y +I KAG AL I EM+ AG + ++ A G E A +
Sbjct: 386 RPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMS 445
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
F +ME P TY+C+++ ++ + +V +L M + L+P + TY
Sbjct: 446 VFSDMEKAG--FLPTPSTYSCLLEMHSAS---GQVDSAMKLYNSMT--NAGLRPGLSTYT 498
Query: 325 LLV 327
L+
Sbjct: 499 ALL 501
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 8/210 (3%)
Query: 82 NRDAP-RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
N+ P + +V M AAG ++ ++ + +G + A + +RP
Sbjct: 296 NKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFL 355
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQA---WLILVEELVRNKYLEDANKVFL 197
+L G G +++ ME + +R + ++ L+E V+ LE A +++
Sbjct: 356 VFASLVDSMGKAGRLDTSMKVY--MEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWD 413
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
K G R +Y +++ K+G A+ + +ME AG + T ++ LL + G
Sbjct: 414 EMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASG 473
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVI 287
+ A + +M ++P TY ++
Sbjct: 474 QVDSAMKLYNSMTNAG--LRPGLSTYTALL 501
Score = 43.5 bits (101), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 4/180 (2%)
Query: 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP 137
HA++ V DM AG P P ++ L+ ++ +G + AM +AG+RP
Sbjct: 433 SHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRP 492
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFL 197
T AL L +K L ++L M+ + + + + ++ +++ ++ A +
Sbjct: 493 GLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLMVYIKDGSVDLALRWLR 552
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEI--AYEMEAAG--RMATTFHFNHLLSCQ 253
G+R + I + K G + +A + Y AA + T HL+ CQ
Sbjct: 553 FMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSILAHLVRCQ 612
>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 822
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 106/273 (38%), Gaps = 43/273 (15%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ + D +D+++ + G P S+ + G+ + A+ ++ + GV P
Sbjct: 390 YCKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPD 449
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFL 197
+ L KG +L+ M +N + LV+ +RN L+ A ++F
Sbjct: 450 AQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFE 509
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
G+ Y++MI CK G ++A+ +M+ A NH
Sbjct: 510 VVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIA---------NH--------- 551
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
PD T++ VI Y + D ++ G M++ ++ +
Sbjct: 552 -------------------APDEYTHSTVIDGYVKQHDLD---SALKMFGQMMK--QKYK 587
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
PNV Y L+ F K ++ A + FRA+Q++
Sbjct: 588 PNVVAYTSLINGFCKIADMSRAEKVFRAMQSFN 620
>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
Length = 854
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L+ ++A+ +F + G + + Y ++ + + L + ++E G
Sbjct: 348 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 407
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
T FN +++ + G + A FE M+ E KP T+N +I+ Y + +
Sbjct: 408 LKPDTILFNAIINASSESGNLDQAMKIFEKMK--ESGCKPTASTFNTLIKGYGKI---GK 462
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+++ + LL MM+ D + LQPN +T +LV+ + + EA +Q+Y
Sbjct: 463 LEESSRLLDMMLRD-EMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSY 512
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 44/206 (21%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ LV L R K+ + + K GL+ +++ +I ++G+ A++I +M
Sbjct: 379 TYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKM 438
Query: 235 EAAGRMATTFHFNHLL------------------------------SC----QATCG--- 257
+ +G T FN L+ +C QA C
Sbjct: 439 KESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRK 498
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
I E ++ YG +KPD T+N + +AY R S +D+ ++ M+ H +++
Sbjct: 499 IEEAWNIVYKMQSYG---VKPDVVTFNTLAKAYARIGSTCTAEDM--IIPRML--HNKVK 551
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHF 343
PNV+T +V + + + EA+R F
Sbjct: 552 PNVRTCGTIVNGYCEEGKMEEALRFF 577
>gi|115456295|ref|NP_001051748.1| Os03g0824100 [Oryza sativa Japonica Group]
gi|113550219|dbj|BAF13662.1| Os03g0824100, partial [Oryza sativa Japonica Group]
Length = 691
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 110/260 (42%), Gaps = 12/260 (4%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
RV ++ +M A G +P P ++ GL+ A+TL G A+ L++ + G P T L
Sbjct: 127 RVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLL 186
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
L+G +G E+ M + +L + ++ ++F +
Sbjct: 187 DLYGRQGRFDGVRELFREMRTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEP 246
Query: 207 -TDEIYDLMIAEDC-KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
D ++M+A C + G H +A E+ + G + T + L+ + E A+
Sbjct: 247 DIDTCENVMVA--CGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYV 304
Query: 265 TFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
F M E G P ETYN + A+ + + AE + + ++ +Q + ++
Sbjct: 305 AFNMMTEIGS---LPTIETYNALANAFAKGGLFQE----AEAIFSRMTNNAAIQKDKDSF 357
Query: 324 ALLVECFTKYCAVTEAIRHF 343
L+E + + + +A++ +
Sbjct: 358 DALIEAYCQGAQLDDAVKAY 377
>gi|125541439|gb|EAY87834.1| hypothetical protein OsI_09254 [Oryza sativa Indica Group]
Length = 502
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 5/213 (2%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ D I GL P +++ L+ A+ E + + R AGV P T +L
Sbjct: 34 VLVDAIRLGLPPDVVTYNTLLAAHCRAAGLEAGLAVMGRMREAGVEPDAVTYNSLIAGAA 93
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLI--LVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+GL L++ M + +W L+ L R+ + EDA +VF A+ G+ D
Sbjct: 94 RRGLPIHALDLFDEMLRAGI-APDSWSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCD 152
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y+ ++ +AG NA + ++ AG + +N +++ C +V +A
Sbjct: 153 TTYNTLLDGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMIN--GLCSSGKVGYARMVL 210
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
E G P+ TY V++ + +++ D
Sbjct: 211 RELGRTDHAPNIITYTAVMKCCFKYGRFEQGLD 243
Score = 44.7 bits (104), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 22/186 (11%)
Query: 173 RQAWL-------ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
R WL + + L R L A V + + GL Y+ ++A C+A
Sbjct: 5 RGRWLLPTRLLNVCLAALCRGGSLAAAESVLVDAIRLGLPPDVVTYNTLLAAHCRAAGLE 64
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN- 284
L + M AG +N L++ A G+P A F+ M + PD+ +YN
Sbjct: 65 AGLAVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRAG--IAPDSWSYNP 122
Query: 285 ---CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
C+ ++ ++Y D+AE K + P TY L++ + A R
Sbjct: 123 LMHCLFRSGHPEDAYRVFADMAE---------KGIAPCDTTYNTLLDGMFRAGYAMNAYR 173
Query: 342 HFRALQ 347
FR LQ
Sbjct: 174 MFRYLQ 179
>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 136/328 (41%), Gaps = 64/328 (19%)
Query: 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAA 164
R++ ++ AY+ G +E A++ +R G P T + +FG G + + +IL
Sbjct: 218 RAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWR--KILGV 275
Query: 165 MEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
+E++ R+K GL+ + +++ + G
Sbjct: 276 LEEM----------------RSK---------------GLKFDEFTCSTVLSACAREGLL 304
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
A + E+++ G T +N LL G+ A + + ME E+ D+ TYN
Sbjct: 305 REAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME--ENNCPADSVTYN 362
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 344
++ AY RA ++ A ++ MM + K + PN TY +++ + K EA++ F
Sbjct: 363 ELVAAYARA---GFSKEAAVVIEMMTQ--KGVMPNAITYTTVIDAYGKAGKEDEALKLFY 417
Query: 345 ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM--- 401
+++ E G + N + LS+ L ++ R E+++ L M K N P RA
Sbjct: 418 SMK--EAG--CVPNTCTYNAVLSM----LGKKSRSNEMIKMLCDM-KSNGCFPNRATWNT 468
Query: 402 ------------ILSRKYRTLVSSWIEP 417
++R +R + S EP
Sbjct: 469 ILALCGNKGMDKFVNRVFREMKSCGFEP 496
>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
Length = 586
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEA 236
I+V+ L R + ++V R + G+ + + + +I+ CKAG +A+ + +M A
Sbjct: 294 IIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVA 353
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
+G M T +N L++ G A ++ M PD T++ +I Y R
Sbjct: 354 SGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMT--RLRCPPDVVTFSSLIDGYCRCGQL 411
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
D D + M + R+QPNV T+++++ K
Sbjct: 412 D---DALRIWSDMAQ--HRIQPNVYTFSIIIHSLCK 442
>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
Length = 762
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 38/233 (16%)
Query: 133 AGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLED 191
AG P T L + G +++ M+++ + +V L + +L
Sbjct: 430 AGYEPDRVTYCTLIDIHAKGGYLEVAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAA 489
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A K+F + G Y++MIA KA ++ N +++ +M+ AG ++ ++
Sbjct: 490 AYKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVME 549
Query: 252 CQATCGIPEVAFATFENME---------YG-----------------------EDYMKPD 279
CG + A A F M YG +D ++P+
Sbjct: 550 VLGHCGHLDEAEAVFIEMRHDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPN 609
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
T N ++ A+ + +R QD +L M+ + L P+++TY LL+ C T+
Sbjct: 610 VPTCNSLLSAFLKI---NRFQDAYSVLQNMLA--QGLVPSLQTYTLLLSCCTE 657
>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 134/319 (42%), Gaps = 18/319 (5%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA-G 134
L+++ + +V DM+ G+S ++F+ LV Y L G E A+ L+R +S
Sbjct: 176 LVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFK 235
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDAN 193
V P + T + + KG + E+L M+K R + LV + L++A
Sbjct: 236 VNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAF 295
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
++ + + Y+++I C AG LE+ M++ +N L+
Sbjct: 296 QIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGC 355
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV-QDVAELLGMMVED 312
G+ A E ME D +K + T+N ++ + E + V + V EL+ D
Sbjct: 356 FELGLSLEARKLMEQME--NDGVKANQVTHNISLKWLCKEEKREAVTRKVKELV-----D 408
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 372
P++ TY L++ + K ++ A+ R + G + N L+ L A
Sbjct: 409 MHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREM----GQKGIKMNTIT----LNTILDA 460
Query: 373 LCREGRIIELLEALEAMAK 391
LC+E ++ E L + K
Sbjct: 461 LCKERKLDEAHNLLNSAHK 479
Score = 47.0 bits (110), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 129/348 (37%), Gaps = 63/348 (18%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G SP ++H L+ AY GD GA+ + R G KG+
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALE-------------------MMREMGQKGIK--- 448
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
M I + +++ L + + L++A+ + K G + Y +I
Sbjct: 449 ------MNTITLNT------ILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGF 496
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
+ ALE+ EM+ T FN L+ G E+A F+ E E + P
Sbjct: 497 FREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFD--ELAESGLLP 554
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
D T+N +I Y + RV+ E ++ +P+ T +L+ K +
Sbjct: 555 DDSTFNSIILGYCKE---GRVEKAFEFYNESIK--HSFKPDNYTCNILLNGLCKEGMTEK 609
Query: 339 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPP 398
A+ F L V +N + A C++ ++ E + L M + + + P
Sbjct: 610 ALNFFNTLIEEREVDTVTYNT---------MISAFCKDKKLKEAYDLLSEM--EEKGLEP 658
Query: 399 RAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKR 446
R +S+I L E+ +L E D + + S G G KR
Sbjct: 659 D--------RFTYNSFISLLMEDGKLS-ETDELLKKFS--GKFGSMKR 695
>gi|242091205|ref|XP_002441435.1| hypothetical protein SORBIDRAFT_09g026630 [Sorghum bicolor]
gi|241946720|gb|EES19865.1| hypothetical protein SORBIDRAFT_09g026630 [Sorghum bicolor]
Length = 664
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 125/309 (40%), Gaps = 47/309 (15%)
Query: 49 HGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFH 108
H LL+ GS V + R++ + H R DA + D + D + + P P+ +
Sbjct: 159 HHLRLLARPGSPVPPSPTAYRVVVECLVADHGRLADAVELKDEMLD--SGFVGPDPKVYR 216
Query: 109 GLVVAYTLNGDHEGAMHSLKRELS--AGVRPLHETLI--ALARLFGSKGLATKGLEILAA 164
L+ + GD A+ L +EL G P+ + ++ L + + G+ K +E
Sbjct: 217 TLMAGFLGAGDGAKAVE-LYQELKDKVGGEPVLDGIVYGTLMKAYFLMGMEEKAMECYKE 275
Query: 165 MEKINYDIR---QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKA 221
+ + +R ++ +V+ L +N LEDA K+F R
Sbjct: 276 VLSVESAVRFGADSYNEVVDALGQNGRLEDALKLFHR---------------------ML 314
Query: 222 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTE 281
G+H L IA ++ + F ++ G E A A F M GE + PD
Sbjct: 315 GEHDPPLRIAVDLRS---------FRVMVDAYCAAGRFEDAIAVFRRM--GEWKLVPDVA 363
Query: 282 TYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
+YN +I+ + D+V+ EL M E + + +TY LL+E + + I
Sbjct: 364 SYNNLIRHLQNNQLIDKVE---ELYSEMCE--SGVGADEETYLLLMEACFSVDRIDDGIS 418
Query: 342 HFRALQNYE 350
+F + E
Sbjct: 419 YFDKMDELE 427
>gi|242088695|ref|XP_002440180.1| hypothetical protein SORBIDRAFT_09g027340 [Sorghum bicolor]
gi|241945465|gb|EES18610.1| hypothetical protein SORBIDRAFT_09g027340 [Sorghum bicolor]
Length = 437
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 115/293 (39%), Gaps = 23/293 (7%)
Query: 137 PLHET-LIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195
PL T AL G+ L + A+ + L+ LV N ++ A +
Sbjct: 89 PLQPTAFAALIDHLGAFSRPDAALLVFRAVPAFCSHSNATFHALLHSLVCNGRVDAARDM 148
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
K G+R Y++++ C S A + EM A G T FN L+ +
Sbjct: 149 LPEAPKLGVRTNAVSYNIILKGVCHRDGFSGARVVLDEMLARGLRPTVVTFNTLVG--SA 206
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
C E+A A E + P+ TY ++Q A YD D +LL M +++
Sbjct: 207 CREGELAAAEQLMDEMARRSVPPNAVTYALLMQGLCDAGRYD---DAKKLLFDM--EYRD 261
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 375
QP+V Y +L+ CA R L + K+ ++ ++ ++ ++ LC
Sbjct: 262 CQPDVTNYGVLMS----ACAACGDAGGIRGLISDMRKRKLTPDDASY----NVLIKCLCD 313
Query: 376 EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEI 428
G++ E AL M + VP A YR L+ E + +LG +
Sbjct: 314 AGKVDEAHRALVEMQLKDGTVPSAA-----TYRVLLDGCCE--ARDFDLGLRV 359
>gi|21537126|gb|AAM61467.1| unknown [Arabidopsis thaliana]
Length = 766
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + L+ L + + DA +V + +GG Y+++I C + E+ +
Sbjct: 512 KIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTD 571
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNCVIQAYT 291
ME G+ + +N L+S F + E M + ED + P TY VI AY
Sbjct: 572 MEKEGKKPDSITYNTLISFFG----KHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYC 627
Query: 292 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
D + + +G+ H ++ PN Y +L+ F+K +A+
Sbjct: 628 SVGELDEALKLFKDMGL----HSKVNPNTVIYNILINAFSKLGNFGQAL 672
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 88/204 (43%), Gaps = 17/204 (8%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
++ L+ +E A + + + G +IY +I+ C+ +A+ + ++
Sbjct: 478 TYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKL 537
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G +N L+ E + +ME ++ KPD+ TYN +I + + +
Sbjct: 538 KEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDME--KEGKKPDSITYNTLISFFGKHK 595
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR--ALQNYEGG 352
++ V+ + E M ED L P V TY +++ + + EA++ F+ L +
Sbjct: 596 DFESVERMME---QMREDG--LDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNP 650
Query: 353 TKVLHN--------EGNFGDPLSL 368
V++N GNFG LSL
Sbjct: 651 NTVIYNILINAFSKLGNFGQALSL 674
Score = 40.4 bits (93), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 32/230 (13%)
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ--AWLIL------------------ 179
E +IAL F S G++ + + + + + R AW IL
Sbjct: 241 EKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNAL 300
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA-- 237
+ L RN + N + L+ + +R ++I K+ ALE+ +M
Sbjct: 301 LSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLSKSRRVDEALEVFEQMRGKRT 360
Query: 238 --GRM--ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
G + A + HFN L+ G + A M+ E+ P+ TYNC+I Y RA
Sbjct: 361 DDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKL-EERCVPNAVTYNCLIDGYCRA 419
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+++ E++ M ED ++PNV T +V ++ + A+ F
Sbjct: 420 V---KLETAKEVVSRMKEDE--IKPNVVTVNTIVGGMCRHHGLNMAVVFF 464
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 123/315 (39%), Gaps = 47/315 (14%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
F + H +N++ + + DM A G+ P +++ L+ A+ NG + + +
Sbjct: 329 FTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRG 388
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM-------EKINYDIRQAWL----- 177
AG P T L +G G + + L I M + ++ A L
Sbjct: 389 MKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGR 448
Query: 178 -----ILVEELVRNKY----LEDANKVFLRGAKGGLRATDEIYD---------------- 212
++++EL R+ Y + A+ + G L E+ D
Sbjct: 449 WEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKT 508
Query: 213 -LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+++ C D + +A M G ++ T FN ++S G+ + A TF +
Sbjct: 509 FVLVYSKCSLVDEAEDAFLA--MRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLR- 565
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
++PD TYNC++ Y R Y + + A L M P++ +Y ++ ++
Sbjct: 566 -STGLEPDVVTYNCLMGMYGREGMYRKCE--ATLRECMAAGQ---TPDLVSYNTVIFSYS 619
Query: 332 KYCAVTEAIRHFRAL 346
K+ ++ A R F +
Sbjct: 620 KHGQLSSATRIFHEM 634
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 10/240 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
++ M ++ +P +++ L+ Y G + A + LK SAG P T L F
Sbjct: 209 ELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAF 268
Query: 150 GSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G GL E+ +M + I D+ + L+ R +E A +++ +
Sbjct: 269 GRAGLCNAAAEMKDSMVSKGIEPDVF-TYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPN 327
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
++ +I K + S + I +M+A G +N LL G+ F
Sbjct: 328 SFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFR 387
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M+ + +PD T+N +I+AY R S D+ + + GM+ P++ T+ L+
Sbjct: 388 GMK--KAGFEPDKATFNILIEAYGRCGSSDQALSIYD--GML---QAGCTPDLATFNTLL 440
Score = 47.0 bits (110), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 11/245 (4%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG-LEILAA 164
++ L+ A + N + A+ ++ AG +P T + L+G KG + + LE+
Sbjct: 119 AYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEE 178
Query: 165 M--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAG 222
M + I D + + E+A ++F + Y+ ++ KAG
Sbjct: 179 MKAQGIQPD-EYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAG 237
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
++ A + EME+AG + +N LLS G+ A ++M ++PD T
Sbjct: 238 WYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMV--SKGIEPDVFT 295
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRH 342
Y ++ AY+RA +V+ E+ M + PN T+ L+ K +E +
Sbjct: 296 YTSLLSAYSRA---GKVEQAMEIYNQMRTSN--CTPNSFTFNALIGMHGKNKNFSEMMVI 350
Query: 343 FRALQ 347
F +Q
Sbjct: 351 FEDMQ 355
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
T A+ ++G KG+ K + A + + + + + + + LR
Sbjct: 540 TFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLREC 599
Query: 201 KGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
+ D + Y+ +I K G S+A I +EM + G +F +N + C G+
Sbjct: 600 MAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMF 659
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
A + ++M + KPD TY ++ AY + ++ V+ + + +
Sbjct: 660 PEALSVVKHMH--KTGCKPDEVTYRTLVDAYCKIGKFEEVERILKFI 704
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 118/305 (38%), Gaps = 43/305 (14%)
Query: 59 SVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG 118
S+VS + + L ++R + ++ M + +P +F+ L+ + N
Sbjct: 283 SMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNK 342
Query: 119 DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL- 177
+ M + + GV P T +L FG G+ ++ L++ M+K ++ +A
Sbjct: 343 NFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFN 402
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAG--DHSNAL------- 228
IL+E R + A ++ + G ++ ++A + G +H+ +
Sbjct: 403 ILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRS 462
Query: 229 -----EIAY-----------EMEAAGRMATTFH-----FNHLL-----SCQATCGIPEVA 262
+IAY E+E M T H F +L + C + + A
Sbjct: 463 SYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEA 522
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F M + Y+ DT T+N +I Y + D+ D LL L+P+V T
Sbjct: 523 EDAFLAMRH-HGYLS-DTSTFNAMISMYGKKGMMDKATDTFALL-----RSTGLEPDVVT 575
Query: 323 YALLV 327
Y L+
Sbjct: 576 YNCLM 580
>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 484
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 9/175 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
W+++++ + ++++ K+F + + G+ T + YD + + G + A +M
Sbjct: 83 WVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKML 142
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+ G T FN ++ CG E A FE+M+ E + PD TYN +I Y
Sbjct: 143 SEGIEPTRHTFNVMIWGFFLCGKVETANRFFEDMKXRE--ISPDVITYNTMINGYY---- 196
Query: 296 YDRVQDVAELLGMMVEDHKR-LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
RV+ + E VE R ++P V TY L++ + V +A+ ++ +
Sbjct: 197 --RVKKIEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALTLLEEMKGF 249
>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
Length = 715
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 40/233 (17%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
+++++ LE+A ++ + + GGL+ Y L+I CK G + A I M G
Sbjct: 196 VLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRG 255
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNCVIQAYTRAESY 296
+ + + LL AT G A ++ +D + + +N +I+AY + E+
Sbjct: 256 QNPDAYTYRTLLHGYATKG----ALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETL 311
Query: 297 DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEG----- 351
D+ + + K PNV TY +++ K V +A+ HF + + EG
Sbjct: 312 DKA-----MTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVS-EGLSPDI 365
Query: 352 --GTKVLHNEGNFGD-----------------PLSLYLR----ALCREGRIIE 381
T ++H G+ P +++L +LC+EGR++E
Sbjct: 366 ITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLE 418
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 129/315 (40%), Gaps = 29/315 (9%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
+F + +A+N + +M G SP ++ ++ G E A+ +
Sbjct: 297 VFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQM 356
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKG----LEILAAMEKINYDIRQAWLIL---VEEL 183
+S G+ P T +L GL T G +E L+ E IN I + L ++ L
Sbjct: 357 VSEGLSPDIITFTSLIH-----GLCTIGEWKKVEKLS-FEMINRGIHPNAIFLNTIMDSL 410
Query: 184 VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATT 243
+ + +A+ F + G++ Y ++I C G ++++ M + G
Sbjct: 411 CKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDN 470
Query: 244 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303
++ LL+ G + A A + M + +D +KP+ TYN ++ A RV
Sbjct: 471 VTYSALLNGYCKNGRVDDALALYREM-FSKD-VKPNAITYNIILHGLFHA---GRVVAAR 525
Query: 304 ELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV-------- 355
E +V+ +Q + TY +++ + V EA+R F+ L++ E +V
Sbjct: 526 EFYMKIVD--SGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIV 583
Query: 356 -LHNEGNFGDPLSLY 369
L G GD SL+
Sbjct: 584 GLLKVGRIGDAKSLF 598
>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g03560, mitochondrial; Flags: Precursor
gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 43/240 (17%)
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
AL + FG G+ + L + M++ + + L+ LV +++ A +VF G
Sbjct: 192 ALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESG 251
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL-SCQA-----TC 256
++ Y+ MI CKAG A+E +ME G A + ++ +C A +C
Sbjct: 252 RIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSC 311
Query: 257 ------------GIPEVAFA-----------------TFENMEYGEDYMKPDTETYNCVI 287
+P AF+ FENM KP+ Y +I
Sbjct: 312 VALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGS--KPNVAIYTVLI 369
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
Y ++ S V+D LL M+++ +P+V TY+++V K V EA+ +F +
Sbjct: 370 DGYAKSGS---VEDAIRLLHRMIDEG--FKPDVVTYSVVVNGLCKNGRVEEALDYFHTCR 424
>gi|295830921|gb|ADG39129.1| AT5G21222-like protein [Neslia paniculata]
Length = 166
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 6/139 (4%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y ++ + + L + ++E G T FN +++ + G + A FE M+
Sbjct: 13 YTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEQMK 72
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E KP T T+N +I+ Y + ++++ + LL MM+ D + LQPN +T +LV+ +
Sbjct: 73 --ESGCKPTTSTFNTLIKGYGK---LGKLEESSRLLEMMLRD-EMLQPNDRTCNILVQAW 126
Query: 331 TKYCAVTEAIRHFRALQNY 349
V EA + +Q+Y
Sbjct: 127 CNQRKVEEAWQIVYKMQSY 145
>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
Length = 700
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 770 WEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLY 829
W+V+ Q +I+ G +P+ A ++ A RA KI ++ G LY
Sbjct: 333 WQVKKFYQ---DIIDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLY 389
Query: 830 DEIISLCLDLGELDAAVAIVADMETTGIAVPDQTLDRVIT 869
+ I+++C DLG +D AV I DM+++GI T +IT
Sbjct: 390 NSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMIT 429
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 20/214 (9%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
+F L+ Y + G+ +G ++ + + GV+P L+ L + G A + ++
Sbjct: 283 AFSTLIRIYKVAGNFDGCLNVYEEMKALGVKP---NLVIYNILLDAMGRAKRPWQV---- 335
Query: 166 EKINYDIRQ--------AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+K DI + L+ R +Y EDA K++ + GL +Y+ ++A
Sbjct: 336 KKFYQDIIDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAM 395
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
G A+EI +M+++G ++ F+ +++ + CG A T M E +
Sbjct: 396 CADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEM--FEAGFQ 453
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE 311
P+ +IQ Y +A+ R+ DV + E
Sbjct: 454 PNIFILTSLIQCYGKAQ---RIDDVVNTFNRIFE 484
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 100/251 (39%), Gaps = 8/251 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M + GL P + ++ +Y G+ E A+ R + R L R++ G
Sbjct: 237 MPSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGN 296
Query: 155 ATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
L + M+ + + IL++ + R K K + GL + Y
Sbjct: 297 FDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAA 356
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
++ +A +A +I EM+ G +N +L+ A G + A FE+M+
Sbjct: 357 LLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMK--S 414
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
+KPD+ T++ +I ++ +V + L M E QPN+ L++C+ K
Sbjct: 415 SGIKPDSWTFSSMITIFSCC---GKVSEAENTLNEMFE--AGFQPNIFILTSLIQCYGKA 469
Query: 334 CAVTEAIRHFR 344
+ + + F
Sbjct: 470 QRIDDVVNTFN 480
>gi|147865347|emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera]
Length = 561
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 9/208 (4%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDA 192
G+ P +ETL + F +K +E+ +E+ L +L++ L + ++ A
Sbjct: 196 GISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTESLNVLLQCLCQRSHVGAA 255
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
N +F KGG+ Y+++I K G M A G F+HL+
Sbjct: 256 N-LFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIEG 314
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G + A F +ME E P+ YN +I + +D + + MV
Sbjct: 315 LGRAGRIDDAVEVFHHME--ETGCVPNACVYNALISNFISTRDFD---ECLKYYNFMVSS 369
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAI 340
+ PN+ TY L+ F K V +A+
Sbjct: 370 N--CDPNMDTYTKLIVAFLKARKVADAL 395
>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 26/264 (9%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
DA R D +M++ G+S + L+ + N D A+ + + G P T
Sbjct: 321 DAIRWKD---EMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFS 377
Query: 144 ALARLFGSKGLATKGLEILAAMEKIN--------YDIRQAWLILVEELVRNKYLEDANKV 195
L F G K LE ME + + I Q WL + + E+A K+
Sbjct: 378 VLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWL-------KGQKHEEALKL 430
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F + GL A I + +++ CK G A E+ +ME+ G +N+++
Sbjct: 431 FDESFETGL-ANVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCR 489
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
++A F NM E +KP+ TY+ +I + ++D Q+V E++ M +
Sbjct: 490 KKNMDLARTVFSNML--EKGLKPNNYTYSILIDGCFK--NHDE-QNVLEVVNQMTSSN-- 542
Query: 316 LQPNVKTYALLVECFTKYCAVTEA 339
++ N Y ++ K ++A
Sbjct: 543 IEVNGVVYQTIINGLCKVGQTSKA 566
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 64/333 (19%), Positives = 138/333 (41%), Gaps = 27/333 (8%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
++ H R ++ V +M+ GL P ++ L+ N D + + + + S+ +
Sbjct: 484 MLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNI 543
Query: 136 R---PLHETLI-ALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYL 189
+++T+I L ++ G +K E+LA M EK ++ +++ ++ +
Sbjct: 544 EVNGVVYQTIINGLCKV----GQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEM 599
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+ A + G+ Y ++ CK ALE+ EM+ G + L
Sbjct: 600 DYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGAL 659
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ E A A F E E+ + P YN +I + + + +L M
Sbjct: 660 IHGFCKKSNMESASALFS--ELLEEGLNPSQPVYNSLISGF---RNLGNMVAALDLYKKM 714
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 369
++D L+ ++ TY L++ K + A + +Q ++ +E + ++
Sbjct: 715 LKDG--LRCDLGTYTTLIDGLLKEGNLILASDLYTEMQ----AVGLVPDEIMY----TVI 764
Query: 370 LRALCREGRIIELLEALEAMAKDNQPVPPRAMI 402
+ L ++G+ +++++ E M K+N V P +I
Sbjct: 765 VNGLSKKGQFVKVVKMFEEMKKNN--VTPNVLI 795
>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 8/243 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M P +++ +V AY G HE + S G+ P T + +G
Sbjct: 350 VLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYG 409
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYL-EDANKVFLRGAKGGLRATDE 209
G K LE+ M ++ A V ++ K L E+ K+ G
Sbjct: 410 RVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHI 469
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ M+A K G H ++ EM+ G FN L+S CG A E M
Sbjct: 470 TWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEM 529
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
P TYN ++ A R + + V +L M +K +P+ +Y+L+V
Sbjct: 530 IKAG--FSPCINTYNALLNALARRGDWKAAESV--ILDM---RNKGFRPSETSYSLMVHS 582
Query: 330 FTK 332
+ K
Sbjct: 583 YAK 585
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 88/221 (39%), Gaps = 9/221 (4%)
Query: 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLA-TKGLEILA 163
R++ ++ AY+ G + A+ +R +G+ P T + ++G G + K LE+L
Sbjct: 223 RAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILELLD 282
Query: 164 AMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG-GLRATDEIYDLMIAEDCKAG 222
M D + V + L D + F G K G + Y+ ++ KAG
Sbjct: 283 EMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAG 342
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
S AL + EME +N +++ G E + M + P+ T
Sbjct: 343 IFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAM--ASKGIMPNAVT 400
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
Y +I AY R D+ E+ M+E PNV TY
Sbjct: 401 YTTIINAYGRVGDIDK---ALEMFDQMME--LGCVPNVATY 436
Score = 46.2 bits (108), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 14/216 (6%)
Query: 82 NRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET 141
N DA ++++ +MI AG SP +++ L+ A GD + A + + G RP ET
Sbjct: 519 NNDAAKMHE---EMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRP-SET 574
Query: 142 LIALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRN---KYLEDANKVF 196
+L +KG KG+E++ EK Y DI +W++L ++ N + L + F
Sbjct: 575 SYSLMVHSYAKGGNVKGIEMI---EKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAF 631
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
K G + + + M++ K + A E+ + AG N L+ A
Sbjct: 632 QALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARG 691
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
G A ++ KPD +YN VI+ + R
Sbjct: 692 GDCWKAEEVLRMLQTSGG--KPDLVSYNTVIKGFCR 725
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 115/308 (37%), Gaps = 59/308 (19%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
VN V +M G P +F+ L+ AY G + A + + AG P T AL
Sbjct: 487 VNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLN 546
Query: 148 LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+G D + A ++++ +RNK G R +
Sbjct: 547 ALARRG-----------------DWKAAESVILD--MRNK---------------GFRPS 572
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL-----SCQATCGIPEVA 262
+ Y LM+ K G+ +E+ + G + ++ L C++ G+ E A
Sbjct: 573 ETSYSLMVHSYAKGGN-VKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGM-ERA 630
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F + Y KPD N ++ + + YDR ++ L+ LQP++ T
Sbjct: 631 FQALQKHGY-----KPDLVLCNSMLSIFAKNNMYDRAHEMLRLI-----HDAGLQPDLVT 680
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL 382
+ L++ + + +A R LQ G ++ + ++ CR+G + E
Sbjct: 681 HNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLV--------SYNTVIKGFCRKGLMQEG 732
Query: 383 LEALEAMA 390
+ L M
Sbjct: 733 IRILSEMT 740
>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
Length = 1429
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 109/261 (41%), Gaps = 8/261 (3%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ V+ ++ +G +P ++++ L+ AY G +E A + G P E++ L
Sbjct: 770 KAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILL 829
Query: 147 RLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
G + ++ ++ + + I + + L++++ R + + K++ G
Sbjct: 830 HALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYL 889
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
T +Y +MI CK +A + EME A +N +L +
Sbjct: 890 PTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQV 949
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
++ ++ E ++PD TYN +I Y R DR + LL M + L P + TY
Sbjct: 950 YQRIK--ETGLEPDETTYNTLIIMYCR----DRRPEEGYLL-MQQMRNLGLDPKLDTYKS 1002
Query: 326 LVECFTKYCAVTEAIRHFRAL 346
L+ F K + +A + F L
Sbjct: 1003 LISAFGKQKCLEQAEQLFEEL 1023
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG--IPEVAFATF 266
++Y+ M+ ++G S A E+ M G + FN L++ + G P +A
Sbjct: 226 QVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELL 285
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+ + ++PD TYN ++ A +R + D V E + E H R QP++ TY +
Sbjct: 286 DMVR--NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDM----EAH-RCQPDLWTYNAM 338
Query: 327 VECFTKYCAVTEAIRHFRALQ 347
+ + + EA R F L+
Sbjct: 339 ISVYGRCGLAAEAERLFMELE 359
Score = 40.8 bits (94), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GLR Y+ +++ + + A+++ +MEA + +N ++S CG+ A
Sbjct: 292 GLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F +E + PD TYN ++ A+ R + ++V++V + + M + T
Sbjct: 352 ERLFMELELKGFF--PDAVTYNSLLYAFARERNTEKVKEVYQQMQKM-----GFGKDEMT 404
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEG 351
Y ++ + K + A++ ++ ++ G
Sbjct: 405 YNTIIHMYGKQGQLDLALQLYKDMKGLSG 433
>gi|356532365|ref|XP_003534744.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 705
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 100/253 (39%), Gaps = 7/253 (2%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M + G P + +V AY + + A+ R + T L +++G G
Sbjct: 225 MPSFGCEPDAMTCSAMVSAYAQTNNVDMALSLYGRAKAEKWSLDASTFSTLIKMYGVLGN 284
Query: 155 ATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ L I M+ + + L+ L R+K A V+ G+ Y
Sbjct: 285 YVECLRIFGEMKVLGVKPTVVTYNTLLGSLFRSKKSWQAKNVYKEMISNGVSPDFITYAT 344
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
++ A +AL + EM+ G T +N LL A G E A FE+M+
Sbjct: 345 LLRIYAGAQYREDALSVYKEMKGNGMDMTVDLYNRLLDMCADVGCIEEAVEIFEDMK-SS 403
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
+PD+ T++ +I Y+ +V + +L M++ QP + LV+C+ +
Sbjct: 404 GTCQPDSLTFSSLITVYS---CNGKVSEAEGMLNEMIQSG--FQPTIYVLTSLVQCYGRA 458
Query: 334 CAVTEAIRHFRAL 346
+ ++ F+ L
Sbjct: 459 KQTDDVVKIFKQL 471
>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
Length = 767
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 106/246 (43%), Gaps = 14/246 (5%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF- 149
V+ +M + G+SP ++ L+ + GD E ++ ++ + + P +L++ + LF
Sbjct: 347 VLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEP---SLVSYSSLFH 403
Query: 150 --GSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
K L+ L+I + Y Q A+ IL++ L+ A+K+ + L
Sbjct: 404 GLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAP 463
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
++ ++ CK G NALE M G + + N ++ G E A
Sbjct: 464 DPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLM 523
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
M+ + P+ TYN VI + +R EL +M++ + + P+V Y+ L
Sbjct: 524 NEMQTQGIF--PNLFTYNAVINRLCKERKSER---ALELFPLMLK--RNVLPSVVVYSTL 576
Query: 327 VECFTK 332
++ F K
Sbjct: 577 IDGFAK 582
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 97/249 (38%), Gaps = 8/249 (3%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H R +++ +M G+ P +++ ++ E A+ L V P
Sbjct: 510 HCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPS 569
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFL 197
L F + + K L + A M KI A+ IL+ L + +A +F
Sbjct: 570 VVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFK 629
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ + G+ Y +IA C+ GD A + EM G + T + L+ C
Sbjct: 630 KMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLV--DGYCK 687
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
+ + A E + PD TYN +I A+ R + D+ E+L M E+ +
Sbjct: 688 MNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDK---ALEMLNEMKENG--VL 742
Query: 318 PNVKTYALL 326
P+ TY +L
Sbjct: 743 PDHMTYMML 751
>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 706
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 17/229 (7%)
Query: 121 EGAMHSLKRELSAGVRPLHETLIA-LARLFGSKGLATKGLEILAAMEKI-NYDIRQAWLI 178
EG +H L + + + ++ ++ A L R G A++ + M + R A L
Sbjct: 195 EGQLHKLDKVVELSRKYMNRSIYAYLVRTLNKLGHASEAHRLFCNMWSYHDRGDRDACLS 254
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
++E L +A + + + G+ +Y+ + + S+ ++ +M+ G
Sbjct: 255 MLESLCNAGKTVEAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDG 314
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA----E 294
+ F +N L+S G A FE +E + KPD +YN +I + E
Sbjct: 315 PLPDIFTYNILISSFGRAGKVYEAIKIFEELENSD--CKPDIISYNSLINCLGKNGDLDE 372
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
++ R +++ E K L P+V TY+ L+ECF K V A R F
Sbjct: 373 AHIRFREMQE---------KGLNPDVVTYSTLIECFGKTDKVEMACRLF 412
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++I+ +AG A++I E+E + +N L++C G + A F M+
Sbjct: 322 YNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQ 381
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E + PD TY+ +I+ + + D+V+ L M+ + PN+ TY +L++C
Sbjct: 382 --EKGLNPDVVTYSTLIECFGKT---DKVEMACRLFDEMLAEG--CFPNIVTYNILLDCL 434
Query: 331 TKYCAVTEAIRHFRALQ 347
+ EA+ + L+
Sbjct: 435 ERSGRTAEAVDLYAKLK 451
Score = 46.2 bits (108), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 19/230 (8%)
Query: 158 GLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
G + M++ Y + A+ +L++ L +++ ++ A KVF K + Y +MI
Sbjct: 61 GFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIR 120
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
+ G +L + EM G +N ++ A + + F M E
Sbjct: 121 MTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMM--EKNC 178
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
+P+ TY+ ++ ++ V EL R N YA LV K
Sbjct: 179 RPNEFTYSVILTLLAAEGQLHKLDKVVEL--------SRKYMNRSIYAYLVRTLNKLGHA 230
Query: 337 TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEAL 386
+EA R F + +Y H+ G+ LS+ L +LC G+ +E ++ L
Sbjct: 231 SEAHRLFCNMWSY-------HDRGDRDACLSM-LESLCNAGKTVEAIDLL 272
Score = 40.4 bits (93), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 7/146 (4%)
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
K L+ Y ++ ++ D N + EM+ G F FN LL A +
Sbjct: 35 KWDLKMNGYTYKCLVQAYLRSCDSDNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVD 94
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
AF FE+M+ + + +PD TY +I+ R D + +A M+ +K PN+
Sbjct: 95 QAFKVFEDMK--KKHCEPDEYTYTIMIRMTGRIGKLD--ESLALFEEML---NKGCSPNL 147
Query: 321 KTYALLVECFTKYCAVTEAIRHFRAL 346
Y +++ V + I F +
Sbjct: 148 IAYNTMIQALANSRMVDKTILLFSKM 173
>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 132/302 (43%), Gaps = 28/302 (9%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSL----KRELSAGVRPLHETLIALA 146
++ +M AAG P + L+ +G + AM L K+ A V L+ TLI+
Sbjct: 55 LLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADV-VLYGTLISG- 112
Query: 147 RLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
F + G +G E+ M + I+ ++ + LV L R ++AN V A+ G+
Sbjct: 113 --FCNNGNLDRGKELFDEMLGKGISANV-VTYSCLVHGLCRLGQWKEANTVLNAMAEHGI 169
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
Y +I CK G ++A+++ M G + +N LLS G+ AF
Sbjct: 170 HPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFK 229
Query: 265 TFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
M E G+ K D TYN +++ +V + +L M ++ L+PNV T+
Sbjct: 230 ILRMMIEKGK---KADVVTYNTLMKGLC---DKGKVDEALKLFNSMFDNENCLEPNVFTF 283
Query: 324 ALLVECFTKYCAVTEAIR-HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL 382
+L+ K +T+A++ H + ++ G V +N + L + G+I E
Sbjct: 284 NMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYN---------MLLGGCLKAGKIKEA 334
Query: 383 LE 384
+E
Sbjct: 335 ME 336
Score = 43.9 bits (102), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 121/318 (38%), Gaps = 24/318 (7%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
RN +I +M +SP S++ L+ + A+ L +AG P
Sbjct: 9 CRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNS 68
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLR 198
T L G + +E+L AM+K +D + L+ N L+ ++F
Sbjct: 69 VTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDE 128
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G+ A Y ++ C+ G A + M G + L+ G
Sbjct: 129 MLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGR 188
Query: 259 PEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
A M E GE+ P TYN ++ + V D ++L MM+E K+
Sbjct: 189 ATHAMDLLNLMVEKGEE---PSNVTYNVLLSGLCKE---GLVIDAFKILRMMIEKGKK-- 240
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP----LSLYLRAL 373
+V TY L++ V EA++ F ++ + E N +P ++ + L
Sbjct: 241 ADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNE----------NCLEPNVFTFNMLIGGL 290
Query: 374 CREGRIIELLEALEAMAK 391
C+EGR+ + ++ M K
Sbjct: 291 CKEGRLTKAVKIHRKMVK 308
>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
Length = 818
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 10/211 (4%)
Query: 97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156
AAG++P S+ L+ NG++E + + GV+P T+ L R L
Sbjct: 403 AAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQK 462
Query: 157 KGLEILAAMEKINYDIRQAW-LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
KG E+ + YD L++ + L A +F + L + + M+
Sbjct: 463 KGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNL----VLCNAML 518
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME--YGE 273
G A+E+ ++M +G + F LL+ + G+ + F+ ME YG
Sbjct: 519 TGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYG- 577
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
+KP TE Y C++ R D D E
Sbjct: 578 --VKPTTENYACMVDLLARCGYLDEAMDFIE 606
>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g42310, mitochondrial; Flags: Precursor
gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 709
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 96/251 (38%), Gaps = 43/251 (17%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ +M G+SP ++ L+ AY G E A LK + V+P L F
Sbjct: 361 MVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFR 420
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+G K ++L M+ I RQ + ++++ + L+ A F R G+
Sbjct: 421 DRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRV 480
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ +I CK G H A E+ ME G +
Sbjct: 481 TWNTLIDCHCKHGRHIVAEEMFEAMERRGCL----------------------------- 511
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
P TYN +I +Y E +D D+ LLG M + + PNV T+ LV+
Sbjct: 512 --------PCATTYNIMINSYGDQERWD---DMKRLLGKM--KSQGILPNVVTHTTLVDV 558
Query: 330 FTKYCAVTEAI 340
+ K +AI
Sbjct: 559 YGKSGRFNDAI 569
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 8/239 (3%)
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
+++ + +GD A+ L + G+ TL+++ G + + + +
Sbjct: 275 IIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSG 334
Query: 170 YDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228
R +A+ L++ V+ L+DA + K G+ + Y L+I AG +A
Sbjct: 335 IKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESAR 394
Query: 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288
+ EMEA +F F+ LL+ G + F + M+ +KPD + YN VI
Sbjct: 395 IVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK--SIGVKPDRQFYNVVID 452
Query: 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ + D + M+ E ++P+ T+ L++C K+ A F A++
Sbjct: 453 TFGKFNCLDHAMTTFD--RMLSEG---IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAME 506
>gi|15233137|ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183498|sp|Q9M316.1|PP292_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g61520, mitochondrial; Flags: Precursor
gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis thaliana]
gi|332646696|gb|AEE80217.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + L+ L + + DA +V + +GG Y+++I C + E+ +
Sbjct: 512 KIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTD 571
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNCVIQAYT 291
ME G+ + +N L+S F + E M + ED + P TY VI AY
Sbjct: 572 MEKEGKKPDSITYNTLISFFG----KHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYC 627
Query: 292 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
D + + +G+ H ++ PN Y +L+ F+K +A+
Sbjct: 628 SVGELDEALKLFKDMGL----HSKVNPNTVIYNILINAFSKLGNFGQAL 672
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 117/284 (41%), Gaps = 28/284 (9%)
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKR----ELSAGVRPLHETLIALARLFGSKGLAT 156
+P +++ L+ Y G E A + R E+ V ++ + + R G
Sbjct: 403 APNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHG----LN 458
Query: 157 KGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+ MEK + ++ ++ L+ +E A + + + G +IY +
Sbjct: 459 MAVVFFMDMEKEGVKGNV-VTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYAL 517
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I+ C+ +A+ + +++ G +N L+ E + +ME ++
Sbjct: 518 ISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDME--KE 575
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
KPD+ TYN +I + + + ++ V+ + E M ED L P V TY +++ +
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMME---QMREDG--LDPTVTTYGAVIDAYCSVG 630
Query: 335 AVTEAIRHFR--ALQNYEGGTKVLHN--------EGNFGDPLSL 368
+ EA++ F+ L + V++N GNFG LSL
Sbjct: 631 ELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSL 674
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 32/230 (13%)
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ--AWLIL------------------ 179
E +IAL F S G++ + + + + + R AW IL
Sbjct: 241 EKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNAL 300
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA-- 237
+ L RN + N + L+ + +R ++I CK+ ALE+ +M
Sbjct: 301 LSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEKMRGKRT 360
Query: 238 --GRM--ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
G + A + HFN L+ G + A M+ E+ P+ TYNC+I Y RA
Sbjct: 361 DDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKL-EERCAPNAVTYNCLIDGYCRA 419
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+++ E++ M ED ++PNV T +V ++ + A+ F
Sbjct: 420 ---GKLETAKEVVSRMKEDE--IKPNVVTVNTIVGGMCRHHGLNMAVVFF 464
>gi|22327132|ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g28460
gi|9502149|gb|AAF88002.1| contains similarity to Pfam family PF01535 (Domain of unknown
function), score=340.5, E=1.9e-98, N=2 [Arabidopsis
thaliana]
gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120 [Arabidopsis thaliana]
gi|27363272|gb|AAO11555.1| At5g28460/F21B23_120 [Arabidopsis thaliana]
gi|332006418|gb|AED93801.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + L+ L + + DA +V + +GG Y+++I C + E+ +
Sbjct: 512 KIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTD 571
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNCVIQAYT 291
ME G+ + +N L+S F + E M + ED + P TY VI AY
Sbjct: 572 MEKEGKKPDSITYNTLISFFG----KHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYC 627
Query: 292 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
D + + +G+ H ++ PN Y +L+ F+K +A+
Sbjct: 628 SVGELDEALKLFKDMGL----HSKVNPNTVIYNILINAFSKLGNFGQAL 672
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 88/204 (43%), Gaps = 17/204 (8%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
++ L+ +E A + + + G +IY +I+ C+ +A+ + ++
Sbjct: 478 TYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKL 537
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G +N L+ E + +ME ++ KPD+ TYN +I + + +
Sbjct: 538 KEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDME--KEGKKPDSITYNTLISFFGKHK 595
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR--ALQNYEGG 352
++ V+ + E M ED L P V TY +++ + + EA++ F+ L +
Sbjct: 596 DFESVERMME---QMREDG--LDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNP 650
Query: 353 TKVLHN--------EGNFGDPLSL 368
V++N GNFG LSL
Sbjct: 651 NTVIYNILINAFSKLGNFGQALSL 674
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 32/230 (13%)
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIR--QAWLIL------------------ 179
E +IAL F S G++ + + + + + R AW IL
Sbjct: 241 EKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNAL 300
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA-- 237
+ L RN + N + L+ + +R ++I CK+ ALE+ +M
Sbjct: 301 LSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRT 360
Query: 238 --GRM--ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
G + A + HFN L+ G + A M+ E+ P+ TYNC+I Y RA
Sbjct: 361 DDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKL-EERCVPNAVTYNCLIDGYCRA 419
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+++ E++ M ED ++PNV T +V ++ + A+ F
Sbjct: 420 ---GKLETAKEVVSRMKEDE--IKPNVVTVNTIVGGMCRHHGLNMAVVFF 464
>gi|14488297|gb|AAK63878.1|AC074105_7 Putative salt-inducible protein [Oryza sativa]
gi|222612440|gb|EEE50572.1| hypothetical protein OsJ_30721 [Oryza sativa Japonica Group]
Length = 854
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 108/277 (38%), Gaps = 58/277 (20%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+++ I G+ F+ L+ AY+ G E A K G+ P TL L
Sbjct: 423 ELLCSAIEKGVQVSVSGFNALIAAYSKEGFDEEAFELYKTMNKLGLAPSSSTLNYLIMGL 482
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLIL------------------------------ 179
++G + L M ++ Y + ++ I
Sbjct: 483 CNRGRLDQARLFLEYMVRMGYCVIASFTIYLDSSFRAGDVLGALKCWDDMKIVGLQPDFV 542
Query: 180 -----VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
V L R +L++A F+ + GL + Y+ +I+ C+AG+ S AL++ +M
Sbjct: 543 AFSAYVNGLCRLDFLDEAYNGFIEMIRRGLVPNNFTYNSLISAFCRAGNVSEALKLEQKM 602
Query: 235 EAAGRMATTFHFNHLLS--CQATCGIPEVAFATFENMEYG--EDYMKPDTETYNCVIQAY 290
+G + F N L+ C+ E T N+ +G + PD TYN ++ AY
Sbjct: 603 RQSGLVPDIFTRNILIDGFCR------EGGLNTANNLFFGMYSIGLTPDVVTYNTMLNAY 656
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRL----QPNVKTY 323
R++ + G M+ +K L +P++ TY
Sbjct: 657 CRSKDIN---------GAMIFMNKMLADGCEPDIFTY 684
>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 484
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 9/175 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
W+++++ + ++++ K+F + + G+ T + YD + + G A +M
Sbjct: 83 WVLMIDSYGKAGIVQESVKLFQKMEELGVERTTKSYDTLFKVILRRGRFMMAKRYFNKML 142
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+ G T FN ++ G E A F++M+ E + PD TYN +I Y R +
Sbjct: 143 SEGIEPTRHTFNVMIWGFFLSGKVETANRFFDDMKSRE--ISPDVITYNTMINGYYRVKK 200
Query: 296 YDRVQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
D + E+ G + ++P V TY L++ + V +A+R ++ Y
Sbjct: 201 MDEAEKYFVEMKG------RNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGY 249
>gi|297745567|emb|CBI40732.3| unnamed protein product [Vitis vinifera]
Length = 520
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 9/208 (4%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDA 192
G+ P +ETL + F +K +E+ +E+ L +L++ L + ++ A
Sbjct: 155 GISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTESLNVLLQCLCQRSHVGAA 214
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
N +F KGG+ Y+++I K G M A G F+HL+
Sbjct: 215 N-LFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIEG 273
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G + A F +ME E P+ YN +I + +D + + MV
Sbjct: 274 LGRAGRIDDAVEVFHHME--ETGCVPNACVYNALISNFISTRDFD---ECLKYYNFMVSS 328
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAI 340
+ PN+ TY L+ F K V +A+
Sbjct: 329 N--CDPNMDTYTKLIVAFLKARKVADAL 354
Score = 43.9 bits (102), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 8/170 (4%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
++++ L R K++E KV G+ E +++ KA S A+E+ +E
Sbjct: 130 VIIKALGRRKFIEFVVKVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEF 189
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G T N LL C A F M+ G + + TYN +I +++ Y
Sbjct: 190 GGKCDTESLNVLLQCLCQRSHVGAANLFFNAMKGGIPF---NCMTYNIIIGGWSK---YG 243
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
++ ++ L MV D PN T++ L+E + + +A+ F ++
Sbjct: 244 KIGEMERCLKAMVADG--FSPNCLTFSHLIEGLGRAGRIDDAVEVFHHME 291
>gi|293332227|ref|NP_001169164.1| uncharacterized protein LOC100383014 [Zea mays]
gi|223975267|gb|ACN31821.1| unknown [Zea mays]
Length = 469
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 99/242 (40%), Gaps = 36/242 (14%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
++++++ +R K + ANK F + GL ++ E Y+++I KAG+ ALE M+
Sbjct: 188 YIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQ 247
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFEN-MEYGEDYMKPDTETYNCVIQAYTRAE 294
+G FN L++ G A A + ME+G + PD T+ +I
Sbjct: 248 ESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHG---LMPDVITFTSLIDGLCHTH 304
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR------------- 341
D D M E R PNV+TY +L+ V++AI
Sbjct: 305 QLD---DAFNCFSEMSEWGVR--PNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPD 359
Query: 342 ---------HFRALQNYEGGTKVLHNEGNFGDPLSLY-----LRALCREGRIIELLEALE 387
F ++ E K+ ++ +G Y ++ALC E R+ E E +
Sbjct: 360 AYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIIL 419
Query: 388 AM 389
AM
Sbjct: 420 AM 421
>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE
1270; Flags: Precursor
gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1440
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 109/261 (41%), Gaps = 8/261 (3%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ V+ ++ +G +P ++++ L+ AY G +E A + G P E++ L
Sbjct: 770 KAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILL 829
Query: 147 RLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
G + ++ ++ + + I + + L++++ R + + K++ G
Sbjct: 830 HALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYL 889
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
T +Y +MI CK +A + EME A +N +L +
Sbjct: 890 PTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQV 949
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
++ ++ E ++PD TYN +I Y R DR + LL M + L P + TY
Sbjct: 950 YQRIK--ETGLEPDETTYNTLIIMYCR----DRRPEEGYLL-MQQMRNLGLDPKLDTYKS 1002
Query: 326 LVECFTKYCAVTEAIRHFRAL 346
L+ F K + +A + F L
Sbjct: 1003 LISAFGKQKCLEQAEQLFEEL 1023
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG--IPEVAFATF 266
++Y+ M+ ++G S A E+ M G + FN L++ + G P +A
Sbjct: 226 QVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELL 285
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+ + ++PD TYN ++ A +R + D V E + E H R QP++ TY +
Sbjct: 286 DMVR--NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDM----EAH-RCQPDLWTYNAM 338
Query: 327 VECFTKYCAVTEAIRHFRALQ 347
+ + + EA R F L+
Sbjct: 339 ISVYGRCGLAAEAERLFMELE 359
Score = 40.8 bits (94), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GLR Y+ +++ + + A+++ +MEA + +N ++S CG+ A
Sbjct: 292 GLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F +E + PD TYN ++ A+ R + ++V++V + + M + T
Sbjct: 352 ERLFMELELKGFF--PDAVTYNSLLYAFARERNTEKVKEVYQQMQKM-----GFGKDEMT 404
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEG 351
Y ++ + K + A++ ++ ++ G
Sbjct: 405 YNTIIHMYGKQGQLDLALQLYKDMKGLSG 433
>gi|255660924|gb|ACU25631.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 484
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 9/175 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
W+++++ + ++++ K+F + + G+ T + YD + + G A +M
Sbjct: 83 WVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKML 142
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+ G T FN ++ G E A FE+M+ E + PD TYN +I Y R +
Sbjct: 143 SXGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE--ISPDVITYNTMINGYYRVKK 200
Query: 296 YDRVQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+ + E+ G K ++P V TY L++ + V +A+R ++ Y
Sbjct: 201 MEEAEKYFVEMKG------KNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGY 249
>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++I+ +AG A++I E+E + FN L++C G + A F+ M
Sbjct: 475 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 534
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E+ + PD TY+ +I+ + + D+V+ L M+ + PN+ TY +L++C
Sbjct: 535 --EEGLSPDVVTYSTLIECFGKT---DKVEMACRLFDEMLAEG--CSPNIVTYNILLDCL 587
Query: 331 TKYCAVTEAIRHFRALQ 347
+ EA+ + L+
Sbjct: 588 ERSGRTAEAVDLYAKLK 604
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 15/175 (8%)
Query: 173 RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
R A++ ++E L +A + + + + +Y+ +++ K S+ ++
Sbjct: 402 RDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYE 461
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+M+ G F +N L+S G E A FE +E KPD ++N +I +
Sbjct: 462 KMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSS--CKPDIISFNSLINCLGK 519
Query: 293 A----ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
E++ R +++ E + L P+V TY+ L+ECF K V A R F
Sbjct: 520 NGDIDEAHMRFKEMRE---------EGLSPDVVTYSTLIECFGKTDKVEMACRLF 565
>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g21222; AltName: Full=SNF1-like protein kinase AtC401
gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
Length = 831
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L+ ++A+ +F + G + + Y ++ + + L + ++E G
Sbjct: 325 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 384
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
T FN +++ + G + A FE M+ E KP T+N +I+ Y + +
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMK--ESGCKPTASTFNTLIKGYGKI---GK 439
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+++ + LL MM+ D + LQPN +T +LV+ + + EA +Q+Y
Sbjct: 440 LEESSRLLDMMLRD-EMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSY 489
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 44/210 (20%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ LV L R K+ + + K GL+ +++ +I ++G+ A++I +M
Sbjct: 356 TYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKM 415
Query: 235 EAAGRMATTFHFNHLL------------------------------SC----QATCG--- 257
+ +G T FN L+ +C QA C
Sbjct: 416 KESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRK 475
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
I E ++ YG +KPD T+N + +AY R S +D+ ++ M+ H +++
Sbjct: 476 IEEAWNIVYKMQSYG---VKPDVVTFNTLAKAYARIGSTCTAEDM--IIPRML--HNKVK 528
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
PNV+T +V + + + EA+R F ++
Sbjct: 529 PNVRTCGTIVNGYCEEGKMEEALRFFYRMK 558
>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
Length = 657
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 119/299 (39%), Gaps = 41/299 (13%)
Query: 128 KRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME-KINYDIRQAWLILVEELVRN 186
K GV + L+ALA ++GL + ++ M + + D+R ++ L+
Sbjct: 292 KNGFDDGVESFNCLLVALA----NEGLGREARQVFDKMHGQYSPDLR-SYTALMLAWCNA 346
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+ L +A +V+ + G++ +++ MI + AL++ M+A G + +
Sbjct: 347 RNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRRPEALKMFELMKAKGPPPNVWTY 406
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
L+ G ++A FE M+ E +PD TY C++ Y A+ DRV V E +
Sbjct: 407 TMLIRDHCKRGKMDMAMECFEEMQ--EARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEM 464
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL-------------------- 346
K P+ +TY L++ T +A R ++ +
Sbjct: 465 -----TQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYF 519
Query: 347 ---QNYEGGTKV---LHNEGNFGD--PLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
+NY G V +H G D ++++ R GR E + +E M P
Sbjct: 520 LGDRNYAMGCAVWEEMHRRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMTAP 578
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 13/247 (5%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV AG ++ +V AY +G A+ + AG +P T +
Sbjct: 220 DVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDAC 279
Query: 150 GSKGL-ATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G G+ K L+I M+K + R + L+ R ED+ +VF + G+
Sbjct: 280 GKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQD 339
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ +I CK G A I M ++ ++ G E A +
Sbjct: 340 IFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYH 399
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYAL 325
+M+ E ++PD +YN +I Y + +D +D +R L+ +V TY
Sbjct: 400 DMK--ESGVRPDRVSYNTLIDIYAKLGRFDDALTAC-------KDMERVGLKADVVTYNA 450
Query: 326 LVECFTK 332
L++ + K
Sbjct: 451 LIDAYGK 457
Score = 40.8 bits (94), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
E+A ++ + G+R Y+ +I K G +AL +ME G A +N
Sbjct: 391 FEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNA 450
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
L+ G + A F+ M+ + + P+ TY+ +I AY++A + QD +
Sbjct: 451 LIDAYGKQGKYKDAAGLFDKMK--AEGLVPNVLTYSALIDAYSKAGMH---QDATSIF-- 503
Query: 309 MVEDHKR--LQPNVKTYALLVECFTKYCAVTEAI 340
+ KR L+P+V Y+ L++ K V +A+
Sbjct: 504 --VEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAV 535
Score = 40.8 bits (94), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 102/255 (40%), Gaps = 15/255 (5%)
Query: 93 YDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSK 152
+DM +G+ P S++ L+ Y G + A+ + K G++ T AL +G +
Sbjct: 399 HDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQ 458
Query: 153 GLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
G + M+ + Y L++ + +DA +F+ + GL+
Sbjct: 459 GKYKDAAGLFDKMKAEGLVPNVLTYSA------LIDAYSKAGMHQDATSIFVEFKRAGLK 512
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+Y +I CK G +A+ + EM AG +N L+ G + A
Sbjct: 513 PDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAA 572
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK-RLQPNVKTYA 324
NM + K + + + T ++ + V + + E + L+PNV T++
Sbjct: 573 KGNMPI-NVFNKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKPNVVTFS 631
Query: 325 LLVECFTKYCAVTEA 339
++ ++ ++ EA
Sbjct: 632 AILNACSRCSSLQEA 646
>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 131/328 (39%), Gaps = 64/328 (19%)
Query: 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAA 164
R++ ++ AY+ G +E A+ +R G P T + +FG G + + +IL
Sbjct: 211 RAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWR--KILGV 268
Query: 165 MEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
++++ R+K GL+ + +++ + G
Sbjct: 269 LDEM----------------RSK---------------GLKFDEFTCSTVLSACAREGLL 297
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
A E E+++ G T +N LL G+ A + + ME E+ D+ TYN
Sbjct: 298 REAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME--ENSCPADSVTYN 355
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 344
++ AY RA V E++ K + PN TY +++ + K EA++ F
Sbjct: 356 ELVAAYVRAGFSKEAAGVIEMM-----TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFY 410
Query: 345 ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM--- 401
+++ E G + N + LSL L ++ R E+++ L M K N P RA
Sbjct: 411 SMK--EAG--CVPNTCTYNAVLSL----LGKKSRSNEMIKMLCDM-KSNGCSPNRATWNT 461
Query: 402 ------------ILSRKYRTLVSSWIEP 417
++R +R + S EP
Sbjct: 462 MLALCGNKGMDKFVNRVFREMKSCGFEP 489
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 21/255 (8%)
Query: 87 RVNDVI---YDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL-SAGVRPLHETL 142
R N++I DM + G SP R+ ++A N + ++ + RE+ S G P +T
Sbjct: 436 RSNEMIKMLCDMKSNGCSPN-RATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTF 494
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAK 201
L +G G ++ M + ++ + L+ L R V
Sbjct: 495 NTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKS 554
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL----SCQATCG 257
G + T+ Y LM+ K G++ I ++ + LL C+A G
Sbjct: 555 KGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAG 614
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
E AF F+ Y KPD +N ++ +TR YD+ + + E + ED L
Sbjct: 615 -SERAFTLFKKHGY-----KPDMVIFNSMLSIFTRNNMYDQAEGILE---SIREDG--LS 663
Query: 318 PNVKTYALLVECFTK 332
P++ TY L++ + +
Sbjct: 664 PDLVTYNSLMDMYVR 678
>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
Length = 831
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L+ ++A+ +F + G + + Y ++ + + L + ++E G
Sbjct: 325 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 384
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
T FN +++ + G + A FE M+ E KP T+N +I+ Y + +
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMK--ESGCKPTASTFNTLIKGYGKI---GK 439
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+++ + LL MM+ D + LQPN +T +LV+ + + EA +Q+Y
Sbjct: 440 LEESSRLLDMMLRD-EMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSY 489
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 44/210 (20%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ LV L R K+ + + K GL+ +++ +I ++G+ A++I +M
Sbjct: 356 TYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKM 415
Query: 235 EAAGRMATTFHFNHLL------------------------------SC----QATCG--- 257
+ +G T FN L+ +C QA C
Sbjct: 416 KESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRK 475
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
I E ++ YG +KPD T+N + +AY R S +D+ ++ M+ H +++
Sbjct: 476 IEEAWNIVYKMQSYG---VKPDVVTFNTLAKAYARIGSTCTAEDM--IIPRML--HNKVK 528
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
PNV+T +V + + + EA+R F ++
Sbjct: 529 PNVRTCGTIVNGYCEEGKMEEALRFFYRMK 558
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 124/294 (42%), Gaps = 23/294 (7%)
Query: 102 PGPRS--FHGLVVAYTLNGDHEGAMHSLKRELS-AGVRPLHETLIALARLFGSKGLATKG 158
P P + ++ L+ Y +G E A L + AG P T + KG
Sbjct: 337 PNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSA 396
Query: 159 LEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
LE+L M ++ + IL+ + LE+A ++ + GL Y+ +I
Sbjct: 397 LELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICA 456
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
CK G+ AL++ EM G + FN L++ E A + + +M + E +
Sbjct: 457 LCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDM-FLEGVIA 515
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
+T TYN ++ A+ +S +Q +L+ M+ L N+ TY L++ K AV
Sbjct: 516 -NTVTYNTLVHAFLMRDS---IQQAFKLVDEMLFRGCPLD-NI-TYNGLIKALCKTGAVE 569
Query: 338 EAIRHFRALQNYEGGTKVLHNEGNFGDPLS--LYLRALCREGRIIELLEALEAM 389
+ + F + +G F +S + + LCR G++ + L+ L+ M
Sbjct: 570 KGLGLFEEML----------GKGIFPTIISCNILISGLCRTGKVNDALKFLQDM 613
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 128/313 (40%), Gaps = 28/313 (8%)
Query: 84 DAPRVN-DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LH 139
D PRV +V YDM++ G+SP +F ++ A + + + A L+ G P ++
Sbjct: 184 DCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIY 243
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFL 197
+TLI ++ L++L M + D+ Q + ++ L R + +A K+
Sbjct: 244 QTLI---HALCENNRVSEALQLLEDMFLMCCEPDV-QTFNDVIHGLCRAGRIHEAAKLLD 299
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
R G Y ++ C+ G A + ++ T +N L+S G
Sbjct: 300 RMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN----PNTVLYNTLISGYVASG 355
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
E A N Y +PD T+N +I + + ELL MV KR +
Sbjct: 356 RFEEAKDLLYNNMVIAGY-EPDAYTFNIMIDGLVKK---GYLVSALELLNEMVA--KRFE 409
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
PNV TY +L+ F K + EA + N + N + + + ALC++G
Sbjct: 410 PNVITYTILINGFCKQGRLEEAAE----IVNSMSAKGLSLNTVGY----NCLICALCKDG 461
Query: 378 RIIELLEALEAMA 390
I E L+ M+
Sbjct: 462 NIEEALQLFGEMS 474
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y ++ CK GD AL + +ME A +N ++ + AF F ME
Sbjct: 224 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKME 283
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+KPD TYN +I +Y R D + LL M+E +++ PNV T+ L++ F
Sbjct: 284 --TKGIKPDVFTYNSLISCLC---NYGRWSDASRLLSDMIE--RKINPNVVTFNSLIDAF 336
Query: 331 TKYCAVTEAIRHF 343
K + EA + F
Sbjct: 337 AKEGKLIEAEKLF 349
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 15/191 (7%)
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
KG + A IY+ +I CK +A ++ +ME G F +N L+SC G
Sbjct: 249 KGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWS 308
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
A +M E + P+ T+N +I A+ + ++ + +L M++ + + PN+
Sbjct: 309 DASRLLSDMI--ERKINPNVVTFNSLIDAFAKE---GKLIEAEKLFDEMIQ--RSIDPNI 361
Query: 321 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 380
TY L+ F + + EA + F + + + V+ + ++ C+ R+
Sbjct: 362 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVV--------TYNTLIKGFCKAKRVE 413
Query: 381 ELLEALEAMAK 391
E +E M++
Sbjct: 414 EGMELFREMSQ 424
Score = 40.4 bits (93), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ IL++ L + LE A VF K + Y++MI CKAG + ++ +
Sbjct: 468 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSL 527
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
G + ++S G+ E A A F M+ ED PD+ YN +I+A R
Sbjct: 528 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK--EDGTLPDSGCYNTLIRARLR 583
>gi|259489858|ref|NP_001159344.1| uncharacterized protein LOC100304439 [Zea mays]
gi|223943533|gb|ACN25850.1| unknown [Zea mays]
Length = 322
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 89/225 (39%), Gaps = 12/225 (5%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEIL--AA 164
++ L+ A NG+ GA L+R GV P T L + + G + L A
Sbjct: 48 YNALLDALCANGNFTGAYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMA 107
Query: 165 MEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
+ +R L LV+ LVR +LE A LR K G+ ++ + C AGD
Sbjct: 108 GRGLRPPVRGRDL-LVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDV 166
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
A+ + + + G + +L A G E AF F ED +P Y
Sbjct: 167 DFAVSLLADASSRGLCPDISTYKVMLPAVAKVGKIEEAFRLFYAAV--EDGHRPFPSLYA 224
Query: 285 CVIQAYTRAESYDRVQDVAELLG-MMVEDHKRLQPNVKTYALLVE 328
+I+A +A R D G M + H PN Y +LV+
Sbjct: 225 AIIKALCKA---GRFADAFAFFGDMKTKGHP---PNRPVYVMLVK 263
Score = 39.7 bits (91), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 94/257 (36%), Gaps = 18/257 (7%)
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRG 199
T A+ +G L + +E+ + + + + L++ L N A K+ R
Sbjct: 12 TFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTGAYKLLRRM 71
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
A+ G+ + ++ C AG A +M G + L+ G
Sbjct: 72 ARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVRGRDLLVDGLVRAGHL 131
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR-LQP 318
E A A M ++ + PD T+N + +A A DV + ++ + R L P
Sbjct: 132 EQAKAFALRMT--KEGILPDVATFNSLAEALCNA------GDVDFAVSLLADASSRGLCP 183
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
++ TY +++ K + EA R F A V F + ++ALC+ GR
Sbjct: 184 DISTYKVMLPAVAKVGKIEEAFRLFYA--------AVEDGHRPFPSLYAAIIKALCKAGR 235
Query: 379 IIELLEALEAMAKDNQP 395
+ M P
Sbjct: 236 FADAFAFFGDMKTKGHP 252
>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
[Oryza sativa Japonica Group]
gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
Length = 836
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 10/211 (4%)
Query: 97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156
AAG++P S+ L+ NG++E + + GV+P T+ L R L
Sbjct: 421 AAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQK 480
Query: 157 KGLEILAAMEKINYDIRQAW-LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
KG E+ + YD L++ + L A +F + L + + M+
Sbjct: 481 KGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNL----VLCNAML 536
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME--YGE 273
G A+E+ ++M +G + F LL+ + G+ + F++ME YG
Sbjct: 537 TGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYG- 595
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
+KP TE Y C++ R D D E
Sbjct: 596 --VKPTTENYACMVDLLARCGYLDEAMDFIE 624
>gi|15241779|ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|9502152|gb|AAF88005.1| similar to a large family of Arabidopsis thaliana salt inducible
protein-like proteins; contains similarity to Pfam
family PF01535 (Domain of unknown function),
score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana]
gi|332006410|gb|AED93793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + L+ L + + DA +V + +GG Y+++I C + E+ +
Sbjct: 512 KIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTD 571
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNCVIQAYT 291
ME G+ + +N L+S F + E M + ED + P TY VI AY
Sbjct: 572 MEKEGKKPDSITYNTLISFFG----KHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYC 627
Query: 292 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
D + + +G+ H ++ PN Y +L+ F+K +A+
Sbjct: 628 SVGELDEALKLFKDMGL----HSKVNPNTVIYNILINAFSKLGNFGQAL 672
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 88/204 (43%), Gaps = 17/204 (8%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
++ L+ +E A + + + G +IY +I+ C+ +A+ + ++
Sbjct: 478 TYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKL 537
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G +N L+ E + +ME ++ KPD+ TYN +I + + +
Sbjct: 538 KEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDME--KEGKKPDSITYNTLISFFGKHK 595
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR--ALQNYEGG 352
++ V+ + E M ED L P V TY +++ + + EA++ F+ L +
Sbjct: 596 DFESVERMME---QMREDG--LDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNP 650
Query: 353 TKVLHN--------EGNFGDPLSL 368
V++N GNFG LSL
Sbjct: 651 NTVIYNILINAFSKLGNFGQALSL 674
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 32/230 (13%)
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIR--QAWLIL------------------ 179
E +IAL F S G++ + + + + + R AW IL
Sbjct: 241 EKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNAL 300
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA-- 237
+ L RN + N + L+ + +R ++I CK+ ALE+ +M
Sbjct: 301 LSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRT 360
Query: 238 --GRM--ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
G + A + HFN L+ G + A M+ E+ P+ TYNC+I Y RA
Sbjct: 361 DDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKL-EERCVPNAVTYNCLIDGYCRA 419
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+++ E++ M ED ++PNV T +V ++ + A+ F
Sbjct: 420 ---GKLETAKEVVSRMKEDE--IKPNVVTVNTIVGGMCRHHGLNMAVVFF 464
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 126/317 (39%), Gaps = 32/317 (10%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ ++ GLSP +F+ L+ A GD A+ + S+G P T L
Sbjct: 392 DLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNL 451
Query: 150 GSKGLATKGLEILAAME-------KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
S G K L++L ME + Y+ +++ L + + +E+A +VF +
Sbjct: 452 CSSGKLAKALDLLKEMEVSGCPQSTVTYN------TIIDGLCKRRRIEEAEEVFDQMDVT 505
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ ++ +I C A +A E+ +M + G +N +L+ G A
Sbjct: 506 GIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKA 565
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL-GMMVEDHKRLQPNVK 321
+ M + + D TY +I +A R Q +LL GM + K ++P K
Sbjct: 566 ADILQTMT--ANGFEVDVVTYATLINGLCKAR---RTQAALKLLRGMRM---KGMKPTPK 617
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR-II 380
Y +++ + +A+ FR + G + R LCR G I
Sbjct: 618 AYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAF--------TYKIVFRGLCRGGGPIK 669
Query: 381 ELLEALEAMAKDNQPVP 397
E + L MA DN +P
Sbjct: 670 EAFDFLVEMA-DNGFIP 685
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 117/305 (38%), Gaps = 20/305 (6%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M + G+ P +F+ ++ A A+ L+ S V P T L F +G
Sbjct: 186 EMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEG 245
Query: 154 LATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
L + A M ++ + +L+ + + DA + G +
Sbjct: 246 SIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFS 305
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+ C+ G +AL++ M G + ++ +++C G E A M
Sbjct: 306 TFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMV-- 363
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ PDT T+N +I A + D+A L + K L PNV T+ +L+ K
Sbjct: 364 DSGCLPDTTTFNTLIVALCTENQLEEALDLARELTV-----KGLSPNVYTFNILINALCK 418
Query: 333 YCAVTEAIRHFRALQNYEGGT--KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
A+R F +++ G T +V +N + + LC G++ + L+ L+ M
Sbjct: 419 VGDPHLAVRLFEEMKS-SGCTPDEVTYN---------ILIDNLCSSGKLAKALDLLKEME 468
Query: 391 KDNQP 395
P
Sbjct: 469 VSGCP 473
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 10/251 (3%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G P F L+ G E A LK G P T +L R + S+G K
Sbjct: 105 GFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKV 164
Query: 159 LEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+I M + + D+ ++ I + + + +++A ++F + G+ Y+ +I
Sbjct: 165 RKIFHLMVSKGLKPDV-YSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIK 223
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
C+A +A + +M A G ++ LL G + F+ M+ +
Sbjct: 224 ALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQ--RRLV 281
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
KPD Y +I R+ +V+D E+L ++ + L+P+V TY LV+ + ++
Sbjct: 282 KPDLVVYTIIINGMCRSR---KVKDAKEVLSRLIVEG--LKPDVHTYTALVDGLCREGSI 336
Query: 337 TEAIRHFRALQ 347
EA+R FR ++
Sbjct: 337 IEALRLFRKME 347
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 106/259 (40%), Gaps = 12/259 (4%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H R++ + MI GL PG +F+ L++ + E A E V+
Sbjct: 105 HVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVF-NETKGNVKLD 163
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFL 197
+ + + G KG E+L ME++ + L++ +N +E ++F
Sbjct: 164 VYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFY 223
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ + + A Y ++I K G + +E+ +M+ G + + +N ++ G
Sbjct: 224 KMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDG 283
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
AF F+ M E + + TYN +I + RV + L+ M D L
Sbjct: 284 KLNNAFELFDEMR--ERGVACNVVTYNTLIGGLCQER---RVLEAERLMCRMKRD--GLS 336
Query: 318 PNVKTYALLVECFTKYCAV 336
PN+ +Y L++ YC++
Sbjct: 337 PNLISYNTLID---GYCSI 352
Score = 47.0 bits (110), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 7/212 (3%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GLSP S++ L+ Y G+ + A + S+G P T L F +
Sbjct: 334 GLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGV 393
Query: 159 LEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+++ ME + + IL++ LVR+ +E A +++ K GL A IY ++I
Sbjct: 394 TDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHG 453
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
C GD A ++ ++ +N ++ G A + M GE+ M
Sbjct: 454 LCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEM--GENGMV 511
Query: 278 PDTETYNCVIQAYTRAESYDR----VQDVAEL 305
P+ +YN IQ + E + ++D+ EL
Sbjct: 512 PNVASYNSTIQILCKDEKWTEAEVLLKDMIEL 543
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 102/252 (40%), Gaps = 20/252 (7%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D + M P +F L+ G A+ L R + G++P T +
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229
Query: 150 GSKGLATKGLEILAAMEKINYDIRQA--WLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
KG L +L ME++++ I + +++ L ++ DA +F + G+
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ MI C +G S+A ++ EM +N L++ + E F FE
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAF----VKEGKF--FE 343
Query: 268 NMEYGEDYMK----PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
E ++ + P+T TYN +I + + + D +D+ L+ K P+V T+
Sbjct: 344 AAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMA-----TKGCSPDVFTF 398
Query: 324 ALLVECFTKYCA 335
L++ YC
Sbjct: 399 TTLID---GYCG 407
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 103/265 (38%), Gaps = 33/265 (12%)
Query: 85 APRVND---VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET 141
A R++D ++++M GL +++ L+ + L GD A+ ++ +S+GV P T
Sbjct: 408 AKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVT 467
Query: 142 LIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
L G LE+ AM+K D+ DA+ F
Sbjct: 468 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDL------------------DASHPF----- 504
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G+ Y+++I G A E+ EM G + T ++ ++ C +
Sbjct: 505 NGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI--DGLCKQSRL 562
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
AT + G P+ T+N +I Y +A RV D EL M + + +
Sbjct: 563 DEATQMFVSMGSKSFSPNVVTFNTLINGYCKA---GRVDDGLELFCEM--GRRGIVADAI 617
Query: 322 TYALLVECFTKYCAVTEAIRHFRAL 346
Y L+ F K + A+ F+ +
Sbjct: 618 IYITLIYGFRKVGNINGALDIFQEM 642
Score = 39.3 bits (90), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 68/362 (18%), Positives = 141/362 (38%), Gaps = 48/362 (13%)
Query: 73 MEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS 132
++ L + R+ DA ++ +M G+ P +++ ++V + +G A L+ L
Sbjct: 262 IDSLCKDGRHSDA---QNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318
Query: 133 AGVRPLHETLIALARLFGSKGLATKGLEILAAM-------EKINYDIRQAWLILVEELVR 185
+ P T AL F +G + E+ M I Y+ +++ +
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNS------MIDGFCK 372
Query: 186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH 245
L+ A +F A G + +I C A + +E+ +EM G +A T
Sbjct: 373 QDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVT 432
Query: 246 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
+N L+ C + ++ A + + + PD T N ++ +++D E+
Sbjct: 433 YNTLI--HGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLC---DNGKLKDALEM 487
Query: 306 LGMMVEDHKRL---------QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL 356
M + L +P+V TY +L+ C + + A + YE +
Sbjct: 488 FKAMQKSKMDLDASHPFNGVEPDVLTYNILI------CGLINEGKFLEAEELYEE----M 537
Query: 357 HNEGNFGDPL--SLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
+ G D + S + LC++ R+ E + +M ++ P + + TL++ +
Sbjct: 538 PHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMG--SKSFSPNVV----TFNTLINGY 591
Query: 415 IE 416
+
Sbjct: 592 CK 593
>gi|302790095|ref|XP_002976815.1| hypothetical protein SELMODRAFT_443322 [Selaginella moellendorffii]
gi|300155293|gb|EFJ21925.1| hypothetical protein SELMODRAFT_443322 [Selaginella moellendorffii]
Length = 641
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/366 (18%), Positives = 135/366 (36%), Gaps = 48/366 (13%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+V DM+ G+ P + LV AY+ E A + L G RP + L
Sbjct: 246 QVETCFRDMVERGIEPDAGIYEALVDAYSGVYRQEEACKAFSSMLERGWRPSSDAYSVLL 305
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
R G ++ ME + Y++ + ++ V ++ +A + G +
Sbjct: 306 RCCLKNWDGVSGYKLFREMEGVGYELTGTLYQEMIHGFVNSRMFSEARALTKEMVSKGFK 365
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYE-MEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ Y +I + + E+ E ++ G + ++ ++ A A
Sbjct: 366 PSPSGYSALILAFASPARVNESWEVFQELLQQCGNVLDRETYSAFVTKLAKMDRAAEAVR 425
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
+E M D +PD +T ++ R S D Q L+ +V + K + P+V+T+
Sbjct: 426 AYEGMTESCD-RRPDEKTLQELVGCLCRTGSVDLAQ---WLINQVVHEFKNIVPSVETFN 481
Query: 325 LLVECFTKYCAVTEAIRHFRALQ---------------------NYEGGTKVLHNEGNFG 363
+++ ++YC + + R+L+ +++ L G
Sbjct: 482 MVL---SEYCCFGPSYGNLRSLEIKKAMELLDEMVKLGRRPTVNSFQIAVHGLCKAGRAF 538
Query: 364 DPLSLYLR------------------ALCREGRIIELLEALEAMAKDNQPVPPRAMILSR 405
D L+L LC GRI+E + + D + V ++++S+
Sbjct: 539 DAYKLFLTIRDFDLAPDAATSKTVIMGLCSIGRIVEAELVFDHLLSDRREVKESSLVVSQ 598
Query: 406 KYRTLV 411
Y+ +V
Sbjct: 599 VYKVIV 604
>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 842
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 10/211 (4%)
Query: 97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLAT 156
AAG++P S+ L+ NG++E + + GV+P T+ L R L
Sbjct: 421 AAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQK 480
Query: 157 KGLEILAAMEKINYDIRQAW-LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMI 215
KG E+ + YD L++ + L A +F + L + + M+
Sbjct: 481 KGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNL----VLCNAML 536
Query: 216 AEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME--YGE 273
G A+E+ ++M +G + F LL+ + G+ + F++ME YG
Sbjct: 537 TGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYG- 595
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
+KP TE Y C++ R D D E
Sbjct: 596 --VKPTTENYACMVDLLARCGYLDEAMDFIE 624
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 136/354 (38%), Gaps = 36/354 (10%)
Query: 84 DAPRVNDVIY---DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
D RV D + DM+ G P ++ L+ A N E AM L + G P
Sbjct: 154 DRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIV 213
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLEDANKVFL 197
T + +G ++L + +Y + ++ L++ L +K +D ++F
Sbjct: 214 TYNVIINGMCREGRVDDARDLLNRL--FSYGCQPDTVSYTTLLKGLCASKRWDDVEELFA 271
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ + +D++I C+ G A+++ +M T N +++ G
Sbjct: 272 EMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQG 331
Query: 258 IPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
+ AF NM YG PDT +Y V++ RAE ++ D ELL MV ++
Sbjct: 332 RVDDAFKFLNNMGSYG---CNPDTISYTTVLKGLCRAERWN---DAKELLKEMVRNN--C 383
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE 376
PN T+ + + + +AI +Q + V+ + C +
Sbjct: 384 PPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNA--------LVNGFCVQ 435
Query: 377 GRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI--EPLQEEAELGYEI 428
G I LE +M P P + Y TL++ E L AEL E+
Sbjct: 436 GHIDSALELFRSM-----PCKPNTI----TYTTLLTGLCNAERLDAAAELVAEM 480
Score = 43.1 bits (100), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 10/166 (6%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
++ +++ L R + DA ++ + + ++ I C+ G A+ + +M
Sbjct: 354 SYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQM 413
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G +N L++ G + A F +M KP+T TY ++ AE
Sbjct: 414 QEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP-----CKPNTITYTTLLTGLCNAE 468
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
R+ AEL+ M+ H+ PNV T+ +LV F + + EAI
Sbjct: 469 ---RLDAAAELVAEML--HRDCPPNVVTFNVLVNFFCQKGFLDEAI 509
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
S++ L+ + NG E ++ +R + A +RP H T + L GL ++GL IL +M
Sbjct: 351 SWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSM 410
Query: 166 EKINYDI---RQAWLILVEELVRNKYLEDANKVFLRGAKG 202
EK +Y + + I+++ L RN LE+A + R KG
Sbjct: 411 EK-DYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKG 449
>gi|326527817|dbj|BAJ88981.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 107/252 (42%), Gaps = 38/252 (15%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ D+I +M G+ + ++GL+ + G A ++ G++P ET AL
Sbjct: 210 KATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKMRGQGIKPDIETWNALI 269
Query: 147 RLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
R G + L LAAM E+ Y + ++ ++ +L ++ ++F + G +
Sbjct: 270 RWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINKLGEQGKWDELKELFDKMRNRGFK 329
Query: 206 ATDEIYDLMI-----------AEDCKAGDHSNALEI----------AYE----------- 233
+ IY +++ A++C A + L++ AY
Sbjct: 330 ESGAIYAVLVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVSV 389
Query: 234 ---MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 290
MEA G N L++ +T G A A F++++ + M PD TY +++A+
Sbjct: 390 LQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQAVFQHIK--DSGMSPDVVTYTTLMKAF 447
Query: 291 TRAESYDRVQDV 302
R + Y++V +V
Sbjct: 448 MRVKRYEKVSEV 459
Score = 42.7 bits (99), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 15/222 (6%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP------ 137
D R ++ DM AAG+ P ++ L+ A G A L G+RP
Sbjct: 67 DLARSLQLLADMQAAGMRPSAAAYARLIRALARAGRALEAEALLLEMRHLGLRPDAAHYN 126
Query: 138 -LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF 196
L E L+A A L LA + L + A + + + R+ +++L++ R LED+ V
Sbjct: 127 ALLEGLLARAHL----RLADR-LLLQMADDGVARN-RRTYMLLLDAYARAGRLEDSWWVL 180
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ G+R Y ++ +G A ++ EM+ G +N L+
Sbjct: 181 GEMKRWGIRLDTAGYSTLVRLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKY 240
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
G A FE M G+ +KPD ET+N +I+ + R + R
Sbjct: 241 GQLADARKMFEKMR-GQG-IKPDIETWNALIRWHCRVGNMKR 280
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/356 (20%), Positives = 142/356 (39%), Gaps = 53/356 (14%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
R R V+ + G P +F L+ + L G A+ + R + RP
Sbjct: 114 FCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPN 173
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFL 197
T+ L KG T+ L ++ M K + + + ++ + ++ A +F
Sbjct: 174 VVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFR 233
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ + ++A+ Y ++I CK G+ +AL + EME G A ++ ++ G
Sbjct: 234 KMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDG 293
Query: 258 -----------------IPEVA-FATFEN--------MEYGEDY-------MKPDTETYN 284
IP V F+ + +E E Y + PDT TY+
Sbjct: 294 RWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYS 353
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 344
+I + + +R+ + ++L +MV K +PN+ TY++L+ + K V +R F
Sbjct: 354 SLIDGFCKE---NRLGEANQMLDLMVS--KGCEPNIVTYSILINSYCKAKRVDNGMRLFC 408
Query: 345 ALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAMAKDNQPVPP 398
+ ++G D ++ ++ C+ G++ E + M ++ VPP
Sbjct: 409 EIS----------SKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMV--SRGVPP 452
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 121/293 (41%), Gaps = 29/293 (9%)
Query: 123 AMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-ILVE 181
A + R L G P T L F +G ++ + ++ M ++ Y + L+
Sbjct: 123 AFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLIN 182
Query: 182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA 241
L + +A + R K G A + Y ++ CK+G+ + AL++ +ME A
Sbjct: 183 GLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKA 242
Query: 242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
+ ++ ++ G + A + F ME +K D Y+ +I +D D
Sbjct: 243 SVVQYSIVIDSLCKDGNLDDALSLFNEMEMKG--IKADVVAYSSIIGGLCNDGRWD---D 297
Query: 302 VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNE-- 359
A++L M+ + + PNV T++ L++ F K + EA K L+NE
Sbjct: 298 GAKMLREMI--GRNIIPNVVTFSALIDVFVKEGKLLEA--------------KELYNEMV 341
Query: 360 --GNFGDPL--SLYLRALCREGRIIELLEALEAM-AKDNQPVPPRAMILSRKY 407
G D + S + C+E R+ E + L+ M +K +P IL Y
Sbjct: 342 ARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSY 394
>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 484
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 9/175 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
W+++++ + ++++ K+F + + G+ T + YD + + G A +M
Sbjct: 83 WVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKML 142
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+ G T FN ++ G E A FE+M+ E + PD TYN +I Y R +
Sbjct: 143 SEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSRE--ISPDVITYNTMINGYCRVKK 200
Query: 296 YDRVQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+ + E+ G K ++P V TY L++ + V +A+R ++ Y
Sbjct: 201 MEEAEKYFVEMKG------KNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGY 249
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 116/282 (41%), Gaps = 19/282 (6%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG---DHEGAMHSLK 128
M+ L ++ R +A ++ D M GL P ++ L+ Y G + G + +
Sbjct: 199 LMDYLCKNGRCTEARKIFD---SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 255
Query: 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNK 187
R G+ P H L + + + + + + M + + + ++ L ++
Sbjct: 256 RN---GIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSG 312
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+EDA F + GL + +Y+ +I C A E+ EM G T FN
Sbjct: 313 RVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFN 372
Query: 248 HLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
++ G + F+ M G +KPD TY+ +I Y A D + +LL
Sbjct: 373 SIIDSHCKEGRVIESEKLFDLMVRIG---VKPDIITYSTLIDGYCLAGKMD---EATKLL 426
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
MV ++P+ TY+ L+ + K + +A+ FR +++
Sbjct: 427 ASMVS--VGMKPDCVTYSTLINGYCKISRMKDALVLFREMES 466
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ +IA CKA A+E+ M +G M +N ++ + G P+ A + M
Sbjct: 126 YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMR 185
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
D ++PD TYN ++ + R + ++ M + + L+P + TY L++ +
Sbjct: 186 --SDGVEPDVVTYNSLMDYLCKN---GRCTEARKIFDSMTK--RGLKPEITTYGTLLQGY 238
Query: 331 TKYCAVTE 338
A+ E
Sbjct: 239 ATKGALVE 246
>gi|356533844|ref|XP_003535468.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Glycine max]
Length = 813
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 103/260 (39%), Gaps = 24/260 (9%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R R RV + +M A G++ ++ L+ Y+ G + A+ L L GV+P
Sbjct: 162 GRARQWRRVESLWNEMNARGIAATCSTYGTLIDVYSKGGRRDDALSWLDMMLGQGVQPDE 221
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
T++ + +L+ G K E N D A L L E +V AN F
Sbjct: 222 VTMVIVVQLYKKAGEFQKAEEFFKKWSLGN-DNAMATLELDERVV------CANASF--- 271
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
Y+ +I KAG A E +M G TT FN +++ G
Sbjct: 272 -------GSHTYNTLIDTYGKAGQLKEASETFAKMLKQGVAPTTVTFNTMINICGNHGQL 324
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
E ME E P+T TYN +I Y + +D + + +M E L+P+
Sbjct: 325 EEVSLLVRKME--ELRCSPNTRTYNILISLYAK---HDDIGMATKYFEIMKE--ACLEPD 377
Query: 320 VKTYALLVECFTKYCAVTEA 339
+ +Y L+ ++ V EA
Sbjct: 378 LVSYRTLLYAYSIRKMVGEA 397
>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
Length = 642
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 43/240 (17%)
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
AL + FG G+ + L + M++ + + L+ LV +++ A +VF G
Sbjct: 174 ALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESG 233
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL-SCQA-----TC 256
++ Y+ MI CKAG A+E +ME G A + ++ +C A +C
Sbjct: 234 RIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSC 293
Query: 257 ------------GIPEVAFA-----------------TFENMEYGEDYMKPDTETYNCVI 287
+P AF+ FENM KP+ Y +I
Sbjct: 294 VALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMI--RKGSKPNVAIYTVLI 351
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
Y ++ S V+D LL M+++ +P+V TY+++V K V EA+ +F +
Sbjct: 352 DGYAKSGS---VEDAIRLLHRMIDEG--FKPDVVTYSVVVNGLCKNGRVEEALDYFHTCR 406
Score = 39.3 bits (90), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 95/250 (38%), Gaps = 32/250 (12%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ +L++ ++ +EDA ++ R G + Y +++ CK G AL+ +
Sbjct: 347 YTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCR 406
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
G + ++ L+ G + A FE M E D+ YN +I A+T+
Sbjct: 407 FDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMS--EKGCTRDSYCYNALIDAFTK--- 461
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR-------------- 341
+ +V + L M E+ + V TY +L+ K EA++
Sbjct: 462 HRKVDEAIALFKRM-EEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTA 520
Query: 342 -HFRALQN-------YEGGTKVLHNEGNFGDPLSL----YLRALCREGRIIELLEALEAM 389
FRAL K+L G L + LC+ GRI E + + +
Sbjct: 521 ACFRALSTGLCLSGKVARACKILDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGI 580
Query: 390 AKDNQPVPPR 399
+ + VP R
Sbjct: 581 TERGREVPGR 590
>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
Length = 662
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 123/292 (42%), Gaps = 30/292 (10%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+ E + H R + + +M+ + P +++ + A G+ E A L+
Sbjct: 117 VIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILED 176
Query: 130 ELSAGVRPLH------------------ETLIALARLFGSKGLATKGLEILAAMEKI--N 169
LS G+ +H E+++++ ++G+ + A M ++
Sbjct: 177 MLSIGM-TVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKG 235
Query: 170 YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229
++A I + L + KY+++A KV G+ Y++MI CK A++
Sbjct: 236 GKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIK 295
Query: 230 IAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
+ +M G F FN LL G E F + M+ + ++PD +Y +I
Sbjct: 296 LHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMK--TEGLQPDIVSYGTIIDG 353
Query: 290 YTRAESYDRVQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
+ +A+ + ++ + EL+ + L+PNV Y L+ + + ++ AI
Sbjct: 354 HCKAKDIRKAKEYLTELM------DRGLKPNVFIYNALIGGYGRNGDISGAI 399
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 76/174 (43%), Gaps = 1/174 (0%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H + +D + + + +++ GL P ++ L+ Y NGD GA+ +++ S G++P
Sbjct: 354 HCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPT 413
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFL 197
+ T +L GL + I + + N D+ + I+++ + + +A F
Sbjct: 414 NVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFE 473
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
G+ Y ++ K+G+ A ++ EM +G + + L++
Sbjct: 474 EMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIA 527
>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Glycine max]
Length = 461
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 15/254 (5%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
I+D + P +S+ L+ + + A + + AG P T + +
Sbjct: 169 IFDAMKGQFVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCK 228
Query: 152 KGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
G + +E++ M+ N + +LV +EDA FL AK G++A
Sbjct: 229 AGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVA 288
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ +I CK N + EME+ G + N ++S G + AF F M
Sbjct: 289 YNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRM- 347
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+PD +TY +I+ + + + + + K+ P++ T++ L++
Sbjct: 348 --IKLCEPDADTYTMMIKMFCEKNELEMALKIWKYM-----KSKQFVPSMHTFSALIKGL 400
Query: 331 T------KYCAVTE 338
K C V E
Sbjct: 401 CEKDNAAKACVVME 414
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 7/187 (3%)
Query: 157 KGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
K EI AM+ +++ IL+E + L A +VF + G Y +M+
Sbjct: 165 KAQEIFDAMKGQFVPDEKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVD 224
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
CKAG A+E+ EM+ T+F ++ L+ E A TF +E + +
Sbjct: 225 VLCKAGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTF--LEMAKKGI 282
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
K D YN +I A+ + + V V + + + + PN +T +++
Sbjct: 283 KADVVAYNALIGAFCKVNKFKNVHRVLKEM-----ESNGVAPNSRTCNVIISSMIGQGQT 337
Query: 337 TEAIRHF 343
A R F
Sbjct: 338 DRAFRVF 344
>gi|297725689|ref|NP_001175208.1| Os07g0491500 [Oryza sativa Japonica Group]
gi|255677777|dbj|BAH93936.1| Os07g0491500, partial [Oryza sativa Japonica Group]
Length = 654
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M AG + +N LL G+ + A F+ M ED ++PD +YN +I+ Y RA
Sbjct: 209 MRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMS-TEDQVRPDVVSYNILIKGYCRA 267
Query: 294 -ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
++D + ++E+ ++ +L P+ TY L++C I F+ ++ G
Sbjct: 268 GRAHDAMARLSEM-----QEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMG 322
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391
+ + L + ALC++G+ E + E M K
Sbjct: 323 NDIPQHA------YVLVIGALCKDGKPFEGMAVFERMLK 355
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1164
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 104/256 (40%), Gaps = 11/256 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ D + Y+M + ++P ++ ++ + GD A L G+ P
Sbjct: 785 CKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDI 844
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLR 198
T L + G + M + + L++ L + L+ AN++
Sbjct: 845 ITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHE 904
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
K GL+ Y+ ++ CK+G+ A+++ E EAAG A T + L+ A C
Sbjct: 905 MWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM--DAYCKS 962
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E+ A E ++P T+N ++ + + ++D +LL M+ K + P
Sbjct: 963 GEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCL---HGMLEDGEKLLNWMLA--KGIAP 1017
Query: 319 NVKTYALLVECFTKYC 334
N T+ LV+ +YC
Sbjct: 1018 NATTFNCLVK---QYC 1030
>gi|255660914|gb|ACU25626.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 481
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 22/242 (9%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
W+++++ + ++++ K+F + + G+ T + YD + + G A +M
Sbjct: 83 WVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKML 142
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+ G T FN ++ G + A FE+M+ E + PD TYN +I R +
Sbjct: 143 SEGIEPTRHTFNVMIWGFFLSGKMDTAMRFFEDMKSRE--ISPDVVTYNTMINGCYRVKK 200
Query: 296 YDRVQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354
D + E+ G K ++P V TY L++ + V +A+R ++ Y G K
Sbjct: 201 MDEAEKYFVEMKG------KNIEPTVVTYTTLIKGYVSVDQVHDALRLVEEMKGY--GIK 252
Query: 355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
N + S L LC G++ E L+ M D P I R L+SS
Sbjct: 253 --PNAITY----STLLPGLCNAGKMSEAQSILKEMV-DKYIAPKDNSIFMR----LISSQ 301
Query: 415 IE 416
E
Sbjct: 302 CE 303
>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
Length = 790
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++I+ +AG A++I E+E + FN L++C G + A F+ M
Sbjct: 539 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 598
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E+ + PD TY+ +I+ + + D+V+ L M+ + PN+ TY +L++C
Sbjct: 599 --EEGLSPDVVTYSTLIECFGKT---DKVEMACRLFDEMLAEG--CSPNIVTYNILLDCL 651
Query: 331 TKYCAVTEAIRHFRALQ 347
+ EA+ + L+
Sbjct: 652 ERSGRTAEAVDLYAKLK 668
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 15/175 (8%)
Query: 173 RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
R A++ ++E L +A + + + + +Y+ +++ K S+ ++
Sbjct: 466 RDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYE 525
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+M+ G F +N L+S G E A FE +E KPD ++N +I +
Sbjct: 526 KMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSS--CKPDIISFNSLINCLGK 583
Query: 293 A----ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
E++ R +++ E + L P+V TY+ L+ECF K V A R F
Sbjct: 584 NGDIDEAHMRFKEMRE---------EGLSPDVVTYSTLIECFGKTDKVEMACRLF 629
>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Cucumis sativus]
Length = 460
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 97/241 (40%), Gaps = 34/241 (14%)
Query: 139 HETL-IALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVF 196
+ETL +AL + +G L KG+E+ M N + Q++ +L+ LV A+++F
Sbjct: 115 NETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFSKASEIF 174
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ + R Y++MI K G A + EM G + +N L
Sbjct: 175 QQAYEMDFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSFLGVLCRK 234
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYN------CVIQAYTRAES--YD----------- 297
G + A F+NM E P+ TY C I Y A+ +D
Sbjct: 235 GEMDTALCLFKNMT--EKGHHPNAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKLRPV 292
Query: 298 ----------RVQDVAELLGMMVEDHK-RLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+ ++ E+ ++ E K RL+P+V TY +LV K V +A + +
Sbjct: 293 NYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYKVLVKM 352
Query: 347 Q 347
Q
Sbjct: 353 Q 353
>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
Length = 680
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 96/251 (38%), Gaps = 43/251 (17%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ +M G+SP ++ L+ AY G E A LK + V+P L F
Sbjct: 332 MVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFR 391
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+G K ++L M+ I RQ + ++++ + L+ A F R G+
Sbjct: 392 DRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRV 451
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ +I CK G H A E+ ME G +
Sbjct: 452 TWNTLIDCHCKHGRHIVAEEMFEAMERRGCL----------------------------- 482
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
P TYN +I +Y E +D D+ LLG M + + PNV T+ LV+
Sbjct: 483 --------PCATTYNIMINSYGDQERWD---DMKRLLGKM--KSQGILPNVVTHTTLVDV 529
Query: 330 FTKYCAVTEAI 340
+ K +AI
Sbjct: 530 YGKSGRFNDAI 540
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 8/239 (3%)
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
+++ + +GD A+ L + G+ TL+++ G + + + +
Sbjct: 246 IIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSG 305
Query: 170 YDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228
R +A+ L++ V+ L+DA + K G+ + Y L+I AG +A
Sbjct: 306 IKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESAR 365
Query: 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288
+ EMEA +F F+ LL+ G + F + M+ +KPD + YN VI
Sbjct: 366 IVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK--SIGVKPDRQFYNVVID 423
Query: 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ + D + M+ E ++P+ T+ L++C K+ A F A++
Sbjct: 424 TFGKFNCLDHAMTTFD--RMLSEG---IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAME 477
>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Glycine max]
Length = 631
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 49/315 (15%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R V Y + P +++ +++ G HE +H L E+ + V +T+ A
Sbjct: 171 RALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHE-KVHELYNEMCSEVHCFPDTVTYSA 229
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+++A K+N D + A ++F + GL+
Sbjct: 230 --------------LISAFAKLNRD------------------DSAIRLFDEMKENGLQP 257
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
T +IY ++ K G AL + EM A + T F + L+ G E A+ T+
Sbjct: 258 TAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTY 317
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+NM +D KPD N +I R+ + ++D +L M PNV TY +
Sbjct: 318 KNML--KDGCKPDVVLMNNLINILGRS---NHLRDAIKLFDEM--KLLNCAPNVVTYNTI 370
Query: 327 VEC-FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 385
++ F ++EA F ++ ++ + + S+ + C+ R+ + L
Sbjct: 371 IKSLFEAKAPLSEASSWFERMKK----DGIVPSSFTY----SILIDGYCKTNRVEKALLL 422
Query: 386 LEAMAKDNQPVPPRA 400
LE M + P P A
Sbjct: 423 LEEMDEKGFPPCPAA 437
Score = 40.4 bits (93), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 73/167 (43%), Gaps = 7/167 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
A+ L+ L K + AN++F + ++ +Y +MI K G + A+ + EM
Sbjct: 437 AYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEM 496
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G + +N L++ + AF+ F ME E+ PD ++N ++ R
Sbjct: 497 KKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTME--ENGCTPDINSHNIILNGLARTG 554
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
+ E+ M + ++P+V ++ ++ C ++ EA +
Sbjct: 555 G---PKGALEMFTKM--KNSTIKPDVVSFNTILGCLSRAGLFEEAAK 596
>gi|218194139|gb|EEC76566.1| hypothetical protein OsI_14394 [Oryza sativa Indica Group]
Length = 701
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 16/249 (6%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P ++ ++ Y G E + R +G +P H LA++FG G
Sbjct: 241 GVLPDEVTYSAILDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGI 300
Query: 159 LEILAAMEKI----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+ M ++ N + A L+E L + A +F G+ +
Sbjct: 301 QFVFKEMREVGIKPNIFVYNA---LLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTAL 357
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI---PEVAFATFENMEY 271
+A +AL++ +M A N LLS A G+ E F+ ++ +
Sbjct: 358 AKIYGRARWGRDALQLWEQMREKKLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDL 417
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
G D KPD +Y +I Y + DR +L MVE ++PN+ +Y ++++C
Sbjct: 418 G-DVPKPDKWSYTAMINIYGSSGDADRA---LQLFAEMVESG--IEPNIMSYTIVIQCLG 471
Query: 332 KYCAVTEAI 340
K + EA+
Sbjct: 472 KAGRIQEAV 480
>gi|27545040|gb|AAO18446.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
gi|108711829|gb|ABF99624.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 863
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 110/260 (42%), Gaps = 12/260 (4%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
RV ++ +M A G +P P ++ GL+ A+TL G A+ L++ + G P T L
Sbjct: 299 RVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLL 358
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
L+G +G E+ M + +L + ++ ++F +
Sbjct: 359 DLYGRQGRFDGVRELFREMRTTVPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEP 418
Query: 207 -TDEIYDLMIAEDC-KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
D ++M+A C + G H +A E+ + G + T + L+ + E A+
Sbjct: 419 DIDTCENVMVA--CGRGGLHEDAREVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYV 476
Query: 265 TFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
F M E G P ETYN + A+ + + AE + + ++ +Q + ++
Sbjct: 477 AFNMMTEIGS---LPTIETYNALANAFAKGGLFQE----AEAIFSRMTNNAAIQKDKDSF 529
Query: 324 ALLVECFTKYCAVTEAIRHF 343
L+E + + + +A++ +
Sbjct: 530 DALIEAYCQGAQLDDAVKAY 549
>gi|34393621|dbj|BAC83297.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 657
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M AG + +N LL G+ + A F+ M ED ++PD +YN +I+ Y RA
Sbjct: 212 MRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMST-EDQVRPDVVSYNILIKGYCRA 270
Query: 294 -ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
++D + ++E+ ++ +L P+ TY L++C I F+ ++ G
Sbjct: 271 GRAHDAMARLSEM-----QEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMG 325
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391
+ + L + ALC++G+ E + E M K
Sbjct: 326 NDIPQHA------YVLVIGALCKDGKPFEGMAVFERMLK 358
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 5/201 (2%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M + GL P +++ ++ AY G + A+ + +G P T + + G K
Sbjct: 340 MTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSR 399
Query: 155 ATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKG-GLRATDEIYD 212
T LE+L M + R W ++ + + +ED L G K G+ + + Y+
Sbjct: 400 FTVMLEMLGEMSRSGCTPNRVTWNTMLA-VCGKRGMEDYVTRVLEGMKSCGVELSRDTYN 458
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+IA + G +NA ++ EM +AG +N LL+ + G A + M
Sbjct: 459 TLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMR-- 516
Query: 273 EDYMKPDTETYNCVIQAYTRA 293
KP+ ++Y+ ++Q Y +
Sbjct: 517 TKGFKPNDQSYSLLLQCYAKG 537
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 112/298 (37%), Gaps = 47/298 (15%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V V+ M + G+ +++ L+ AY G A SAG P T AL
Sbjct: 438 VTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLN 497
Query: 148 LFGSKG-----------LATKG-----------LEILA---------AMEKINYD--IRQ 174
+ +G + TKG L+ A A+EK Y +
Sbjct: 498 VLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFP 557
Query: 175 AWLILVEELVRN---KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIA 231
+W+IL ++ N + L K F G I++ M++ K G +S EI
Sbjct: 558 SWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIF 617
Query: 232 YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 291
++ +G +N L+ A C A ++ + +KPD +YN VI +
Sbjct: 618 DSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQ--VKPDVVSYNTVINGFC 675
Query: 292 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+ +++ +L M+ D + P V TY LV + +EA R + NY
Sbjct: 676 KQ---GLIKEAQRILSEMIADG--MAPCVVTYHTLVGGYASLEMFSEA----REVINY 724
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 42/248 (16%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R PR+ ++ +M AAG+ P + ++ A +G + A+ + + G P T
Sbjct: 223 RSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTY 282
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
AL ++FG G T+ L +L ME +
Sbjct: 283 NALLQVFGKAGNYTEALRVLKEME----------------------------------QD 308
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G + Y+ + +AG + A + M + G + F +N +++ G + A
Sbjct: 309 GCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEA 368
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
A F+ M+ + P+ TYN ++ + R + E+LG M PN T
Sbjct: 369 LALFDQMK--KSGCVPNVNTYNFILGMLGKK---SRFTVMLEMLGEM--SRSGCTPNRVT 421
Query: 323 Y-ALLVEC 329
+ +L C
Sbjct: 422 WNTMLAVC 429
Score = 40.8 bits (94), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ ++ KAG+++ AL + EME G +N L A G E A + M
Sbjct: 282 YNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMT 341
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR-LQPNVKTYALLVEC 329
+ P+ TYN V+ A Y + V E L + + K PNV TY ++
Sbjct: 342 --SKGLLPNAFTYNTVMTA------YGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGM 393
Query: 330 FTK 332
K
Sbjct: 394 LGK 396
>gi|473874|gb|AAA17740.1| a membrane-associated salt-inducible protein [Nicotiana tabacum]
Length = 435
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 97/243 (39%), Gaps = 8/243 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
+ D+I GL P ++ ++ A+ G+ + A+ +++ RP T + + F
Sbjct: 18 IFEDVIRDGLKPDVVLYNNIIRAFCGMGNMDRALRIVEQMKKERHRPTSRTFMPIIHAFA 77
Query: 151 SKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G K L++ M + Q + L+ LV + ++ A +V G+R +
Sbjct: 78 KAGAIRKALDVFDMMRRSGCIPTVQTYNALILGLVEKRQMDKAVEVVDEMLLAGIRPNER 137
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y ++ GD A E ++ G + + LL G E A A + M
Sbjct: 138 TYTTIMDGYASLGDTGKAFEYFSRIKDEGLELDVYTYEALLKACCKSGRIESALAVTKEM 197
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ +T YN +I + R V + A+L+ M ++ +QP++ TY V
Sbjct: 198 NAKN--IPRNTFVYNILIDGWARRSD---VWEAADLMQQMRQEG--VQPDIHTYTSFVNA 250
Query: 330 FTK 332
K
Sbjct: 251 CCK 253
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 90/226 (39%), Gaps = 22/226 (9%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R + +V+ +M+ AG+ P R++ ++ Y GD A R G+ T
Sbjct: 115 RQMDKAVEVVDEMLLAGIRPNERTYTTIMDGYASLGDTGKAFEYFSRIKDEGLELDVYTY 174
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGA 200
AL + G L + M N R ++ IL++ R + +A + +
Sbjct: 175 EALLKACCKSGRIESALAVTKEMNAKNIP-RNTFVYNILIDGWARRSDVWEAADLMQQMR 233
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR------MATTFHFNHLLSCQA 254
+ G++ Y + CKAGD A+ EM+ G + ++ H
Sbjct: 234 QEGVQPDIHTYTSFVNACCKAGDMQKAMNTIQEMKRVGLNPMLKPIPLSYTVGH------ 287
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY----TRAESY 296
+PE A FE M+ + +KPD Y+C++ + T AE Y
Sbjct: 288 -ASLPEKALKCFEEMK--KSGLKPDKAVYHCLMTSLLSRATVAEDY 330
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 91/237 (38%), Gaps = 21/237 (8%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L+ + K +A +F + GL+ +Y+ +I C G+ AL I +M+
Sbjct: 1 MLINGFIYLKDWANAFAIFEDVIRDGLKPDVVLYNNIIRAFCGMGNMDRALRIVEQMKKE 60
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
T+ F ++ A G A F+ M P +TYN +I D
Sbjct: 61 RHRPTSRTFMPIIHAFAKAGAIRKALDVFDMMR--RSGCIPTVQTYNALILGLVEKRQMD 118
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+ +V + + + ++PN +TY +++ + +A +F +++ V
Sbjct: 119 KAVEVVDEMLL-----AGIRPNERTYTTIMDGYASLGDTGKAFEYFSRIKDEGLELDVYT 173
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
E L+A C+ GRI L + M N +P + Y L+ W
Sbjct: 174 YEA--------LLKACCKSGRIESALAVTKEMNAKN--IPRNTFV----YNILIDGW 216
>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Brachypodium distachyon]
Length = 556
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 99/255 (38%), Gaps = 8/255 (3%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ R + R ++V + + G+ P R++ L+ + G E A L GV
Sbjct: 263 YCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHN 322
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFL 197
+ + G+ K LEI A MEK+ ++ + L L R +EDA K+
Sbjct: 323 QIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLH 382
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
A+ G+ Y +I+ K GD A + +ME G + +N ++ G
Sbjct: 383 IMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNG 442
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
A + ME + + PD TY ++ + D + E + H+ +
Sbjct: 443 SIREAERFKKEME--KKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEM-----KHRGTK 495
Query: 318 PNVKTYALLVECFTK 332
PNV Y LV K
Sbjct: 496 PNVVAYTALVSGLAK 510
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 16/248 (6%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
++ L+ +YT + + LK + GV P T L G +K + M
Sbjct: 185 CYNSLLDSYTRQRNDDAVAGLLKEMENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEM 244
Query: 166 EKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD 223
++ N D+ + ++ R + A++VF G+ + Y +I CK G
Sbjct: 245 KRKNVAGDV-YFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIGQ 303
Query: 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF---ATFENMEYGEDYMKPDT 280
A + +M+ G FN ++ G+ E A A E M ++ D
Sbjct: 304 IEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMG-----IELDI 358
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
TYN + R +R++D +LL +M E K + PN +Y L+ K + EA
Sbjct: 359 YTYNTLACGLCRV---NRMEDAKKLLHIMAE--KGVAPNYVSYTTLISIHAKEGDMVEAR 413
Query: 341 RHFRALQN 348
R FR ++
Sbjct: 414 RLFRDMEG 421
>gi|357135236|ref|XP_003569217.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
chloroplastic-like [Brachypodium distachyon]
Length = 644
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 3/207 (1%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G +P + L+ AY+ N ++E A +K S+ + P L L +++ GL K
Sbjct: 249 GHNPNLFHYSSLLNAYSENSNYEKAELLMKDLRSSKLIPNKVILTTLLKVYSKGGLFEKA 308
Query: 159 LEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+L +E + + IL++ L + + +A +F + G+++ + +MI+
Sbjct: 309 KELLTELEASGFAQDEMPYCILIDALAKGGKIWEATMLFNEMKEKGVKSDGYAFSIMISA 368
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
+AG A ++A E E N L E + M+ E +
Sbjct: 369 LHRAGYREEAKQLAKEFEDQNTTYDLVILNTSLRAYCNTNDTESVMRMLKKMD--ELNIS 426
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAE 304
PD T+N +I+ + + + Y V E
Sbjct: 427 PDHITFNTLIRYFCKGKVYHLVYKTIE 453
>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
Length = 822
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 120/290 (41%), Gaps = 29/290 (10%)
Query: 111 VVAYTL-------NGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILA 163
VV YT+ G + A+ + L G P H L F K GL+I
Sbjct: 520 VVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFK 579
Query: 164 AMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKA 221
M+ I DI + +L+ R +E+ ++ K GL Y+ MI C
Sbjct: 580 LMQSNGIFPDI-CIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSL 638
Query: 222 GDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPD 279
S A+++ +E+ GR F L+ G + A F +M E G + P+
Sbjct: 639 KIFSKAIKL-FEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPE---PN 694
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
TY+C+I Y + E+ + EL M+ D R+ PN+ +Y++L++ K + EA
Sbjct: 695 ILTYSCLIDGYFKTEN---TESAFELYEKMLGD--RVSPNIVSYSILIDGLCKKGLMEEA 749
Query: 340 IRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
F+ G +L + +G + +R C+ GR+ E + + M
Sbjct: 750 SLAFQC----AIGRHLLPDVIAYG----ILIRGYCKVGRLAEAMMLYDHM 791
>gi|41393251|gb|AAS01974.1| putative chloroplastic RNA-binding protein, with alternative
splicing isoforms [Oryza sativa Japonica Group]
gi|108712189|gb|ABF99984.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 884
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 16/249 (6%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P ++ ++ Y G E + R +G +P H LA++FG G
Sbjct: 238 GVLPDEVTYSAILDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGI 297
Query: 159 LEILAAMEKI----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+ M ++ N + A L+E L + A +F G+ +
Sbjct: 298 QFVFKEMREVGIKPNIFVYNA---LLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTAL 354
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI---PEVAFATFENMEY 271
+A +AL++ +M A N LLS A G+ E F+ ++ +
Sbjct: 355 AKIYGRARWGRDALQLWEQMREKKLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDL 414
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
G D KPD +Y +I Y + DR +L MVE ++PN+ +Y ++++C
Sbjct: 415 G-DVPKPDKWSYTAMINIYGSSGDADRA---LQLFAEMVESG--IEPNIMSYTIVIQCLG 468
Query: 332 KYCAVTEAI 340
K + EA+
Sbjct: 469 KAGRIQEAV 477
>gi|449018641|dbj|BAM82043.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 805
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 12/247 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI-ALARL 148
++ + MI G++P +F L A T + AM + ++ L+ + A+ +
Sbjct: 418 EMFHKMIRNGVAPNAFTFSALFGALTDGAFFDQAMRLFQMIRASYPNELNVVVYNAVLKY 477
Query: 149 FGSKGLATKGLEILAAMEK---INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
G G L++L ME+ + DI IL + + + + A V R K G+R
Sbjct: 478 VGRAGRIDAALDLLGQMEQNRNVQPDIVTYGTIL-DICAKKQDVSLAYAVLDRMRKRGMR 536
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+ Y +I +AG A + ++ A G F N LL A + E AF
Sbjct: 537 PNNFCYASLIDACARAGLPDQAESLFRQLRAEGLEYDLFICNALLGAFARAKMVERAFQA 596
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
FE M ++ D T+N +I A RA +D+ E + + + TY
Sbjct: 597 FEEMRSAG--VRGDRITFNTLITAAARAREFDKAWKAFETM-----KKSNISADATTYNA 649
Query: 326 LVECFTK 332
L++ +K
Sbjct: 650 LIDACSK 656
>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 780
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 103/252 (40%), Gaps = 9/252 (3%)
Query: 97 AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG-LA 155
+ G+S F L+ AY G E A+ S R RP T + R+ +
Sbjct: 120 SGGVSVDSYCFCVLISAYAKMGLAEKAVESFGRMKEFDCRPDVFTYNVILRIMMREDVFF 179
Query: 156 TKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+ M K N + IL++ L + DA K+F G+ Y ++
Sbjct: 180 MLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTIL 239
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I+ C+ G +A ++ YEM+A+G + N LL G AF E +D
Sbjct: 240 ISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFE--KD 297
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
Y+ +I RA Y + EL M++ + ++P++ Y +L++ +K
Sbjct: 298 GFVLGLRGYSSLIDGLFRARRYTQ---AFELYANMLK--RNIKPDIILYTILIQGLSKAG 352
Query: 335 AVTEAIRHFRAL 346
+ +A++ R++
Sbjct: 353 KIEDALKLLRSM 364
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 109/275 (39%), Gaps = 14/275 (5%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R R + ++ +M+ + P + L+ + G E A+ L+ S G+ P
Sbjct: 315 RARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITPDTY 374
Query: 141 TLIALARLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
A+ + +GL +G + M E ++ IL+ + RN + A ++FL
Sbjct: 375 CYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVRKAEEIFLEI 434
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTF-----HFNHLLSCQA 254
K G + ++ +I CK+G+ A + ++ME GR A+ F N
Sbjct: 435 EKSGCSPSVATFNALIDGLCKSGELKEARLLLHKME-VGRPASLFLRLAHSGNRSFDTMV 493
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G A+ + + + PD +YN +I + R D + +L + K
Sbjct: 494 QSGSILKAYKNLAH--FADTGNSPDIVSYNVLINGFCREGDIDGALKLLNVLQL-----K 546
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
L P+ TY L+ + EA + F A ++
Sbjct: 547 GLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDDF 581
>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 783
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 128/320 (40%), Gaps = 61/320 (19%)
Query: 120 HEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM-------EKINYDI 172
+E A ++ L ++P + R +G T+ L +L M + I Y+
Sbjct: 319 YEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNA 378
Query: 173 RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
L++ YL++A + L +K + Y ++I CK G + A I
Sbjct: 379 ------LIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFK 432
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
EME G + + FN L++ E A F ME KP + R
Sbjct: 433 EMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVR---KP---------SLFLR 480
Query: 293 -AESYDRVQDVAELL---------GMMVEDHKRLQ--------PNVKTYALLVECFTKYC 334
++ D+V D+A L GM+++ +K L P+++TY +L+ F K+
Sbjct: 481 LSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFG 540
Query: 335 AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAMAKD 392
+ A + F+ +Q +G+ D ++ + L R GR + LE E M K
Sbjct: 541 NINGAFKLFKEMQ----------LKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKK 590
Query: 393 NQPVPPRAMILSRKYRTLVS 412
VP S Y+T+++
Sbjct: 591 G-CVPE-----SSTYKTIMT 604
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 105/261 (40%), Gaps = 8/261 (3%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
++ ++ DM GL+P +++ L+ +E A+ + AG RP T AL
Sbjct: 233 KIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALL 292
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLR 205
++G + +E+L ME ++ + LV VR LEDA + + G++
Sbjct: 293 DVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIK 352
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y +++ AG A+E+ EM G FN L+ G E
Sbjct: 353 PDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKV 412
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
F+ ++ + PD T+N ++ + + V V E + R P T+
Sbjct: 413 FKEIKVCK--CSPDIVTWNTLLAVFGQNGMDSEVSGVFEEM-----KRSRFAPERDTFNT 465
Query: 326 LVECFTKYCAVTEAIRHFRAL 346
L+ + + + +A+ ++ +
Sbjct: 466 LISAYGRCGSFDQAMAAYKRM 486
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 105/257 (40%), Gaps = 16/257 (6%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ ++R +V+ M + P +++ LV AY G E A+ ++ + G++P
Sbjct: 295 YGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPD 354
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKI----NYDIRQAWLILVEELVRNKYLEDANK 194
T L F + G +E+ M K+ N A + + + R K+ E+ K
Sbjct: 355 VYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGD--RGKF-EEMVK 411
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
VF ++ ++A + G S + EM+ + FN L+S
Sbjct: 412 VFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYG 471
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVEDH 313
CG + A A ++ M E + PD TYN V+ R +++ + V AE+
Sbjct: 472 RCGSFDQAMAAYKRML--EAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEM------KD 523
Query: 314 KRLQPNVKTYALLVECF 330
+PN TY+ L+ +
Sbjct: 524 GGCKPNEVTYSSLLHAY 540
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 114/318 (35%), Gaps = 61/318 (19%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALAR 147
V+ V +M + +P +F+ L+ AY G + AM + KR L AGV P T A+
Sbjct: 444 VSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLA 503
Query: 148 LFGSKGLATKGLEILAAM--------------------------------EKINYDIRQA 175
GL + ++LA M E+I +
Sbjct: 504 TLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKT 563
Query: 176 WLILVEELV----RNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIA 231
+L++ LV + L + + FL K G+ + M++ + A EI
Sbjct: 564 HAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEIL 623
Query: 232 YEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK--------PDTETY 283
M +G + +N L+ ++ EN E + PD +Y
Sbjct: 624 NFMYESGLTLSLTSYNSLM----------YMYSRTENFHKSEQIFREILDKGIEPDVISY 673
Query: 284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
N VI AY R + D + + E + + P+V TY + + EAI
Sbjct: 674 NIVIYAYCRNDMMDEAKRIIEEMKVPAP-----VPDVVTYNTFIAAYAADSMFVEAIDVI 728
Query: 344 RALQNYEGGTKVLHNEGN 361
R + + G K HN N
Sbjct: 729 RYM--IKQGCKPNHNTYN 744
>gi|3152594|gb|AAC17075.1| Contains repeats similar to RECA protein gb|L26100 from
Acinetobacter calcoaceticus [Arabidopsis thaliana]
Length = 566
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 17/247 (6%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA---- 144
N ++ +M +P +++ L+ + +G E A+ LK E+S G T +
Sbjct: 291 NSLLAEMDGGDRAPSVVTYNILINSLAFHGRTEQALQVLK-EMSKGNHQFRVTATSYNPV 349
Query: 145 LARLF--GSKGLATKGL-EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
+ARL G L K L E++ K N A L E N +++A + +
Sbjct: 350 IARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNAIGSLCEH---NSKVQEAFYIIQSLSN 406
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
T + Y +I C+ G+ A ++ YEM G ++ L+ G+
Sbjct: 407 KQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRGLCLEGMFTG 466
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A ME E+ KP + +N +I + D +V E MMVE K+ PN
Sbjct: 467 AMEVLSIMEESEN-CKPTVDNFNAMILGLCKIRRTDLAMEVFE---MMVE--KKRMPNET 520
Query: 322 TYALLVE 328
TYA+LVE
Sbjct: 521 TYAILVE 527
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 149/402 (37%), Gaps = 81/402 (20%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
+ +L + R + A RV ++ M+++G+ P ++ LV G+ AM +++
Sbjct: 102 LLYDLCKANRLKKAIRVIEL---MVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKME 158
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILA-AMEKINYDIRQAWLILVEELVRNKYLE 190
G T AL R G + L+ + M+K + L+E + + +
Sbjct: 159 DHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYKERGTD 218
Query: 191 DANK----VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+A K + ++G + L + Y++++ CK G +A+ + E+ A G A +
Sbjct: 219 EAVKLLDEIIVKGGEPNLVS----YNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSY 274
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI------------------- 287
N LL C G E A + M+ G+ P TYN +I
Sbjct: 275 NILLRCLCCDGRWEEANSLLAEMDGGDR--APSVVTYNILINSLAFHGRTEQALQVLKEM 332
Query: 288 -----QAYTRAESYD----------RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
Q A SY+ +V V + L M+ ++R +PN TY +
Sbjct: 333 SKGNHQFRVTATSYNPVIARLCKEGKVDLVVKCLDEMI--YRRCKPNEGTYNAIGSLCEH 390
Query: 333 YCAVTEAIRHFRALQN---------YEGGTKVLHNEGN-FG-------------DP---- 365
V EA ++L N Y+ L +GN F DP
Sbjct: 391 NSKVQEAFYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHT 450
Query: 366 LSLYLRALCREGRIIELLEALEAMAKDNQPVPP----RAMIL 403
S +R LC EG +E L M + P AMIL
Sbjct: 451 YSALIRGLCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMIL 492
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 104/256 (40%), Gaps = 11/256 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ D + Y+M + ++P ++ ++ + GD A G+ P
Sbjct: 805 CKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDS 864
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLR 198
T L + G + M + + L++ L + L+ AN++
Sbjct: 865 VTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHE 924
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
K GL+ Y+ ++ CK+G+ A+++ E EAAG A T + L+ G
Sbjct: 925 MWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGE 984
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
+ A + M G+ ++P T+N ++ + + ++D +LL M+ K + P
Sbjct: 985 MDKAQEILKEM-LGKG-LQPTIVTFNVLMNGFCL---HGMLEDGEKLLNWMLA--KGIAP 1037
Query: 319 NVKTYALLVECFTKYC 334
N T+ LV+ +YC
Sbjct: 1038 NATTFNSLVK---QYC 1050
>gi|302141771|emb|CBI18974.3| unnamed protein product [Vitis vinifera]
Length = 324
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 8/144 (5%)
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+EDA FL + + A +Y+ +I CK NA + EM+ G + N
Sbjct: 114 IEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNI 173
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
+L+ +CG + AF F M D PD +TY +I+ + + + V + + +
Sbjct: 174 ILNSLISCGDTDEAFRVFRRMIKVCD---PDADTYTMMIKMFCENDKLEMALKVWKYMRL 230
Query: 309 MVEDHKRLQPNVKTYALLVECFTK 332
K+ P++ T+++L+ K
Sbjct: 231 -----KQFVPSMHTFSVLINGLCK 249
Score = 39.7 bits (91), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
++ G+R + + + ++ AG A+ I EM+++ T+F ++ L+
Sbjct: 55 SESGIRVSPIVVENVLKRFENAGRVDEAVGIVKEMDSSVCKPTSFIYSVLVHTYGIENRI 114
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
E A TF +ME E ++ D YN +I A+ + +++++ +L M D K ++PN
Sbjct: 115 EDAVYTFLDMERNE--IEADVAVYNALIGAFCKV---NKLKNAYRVLNEM--DCKGIRPN 167
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRAL 346
+T +++ EA R FR +
Sbjct: 168 SRTCNIILNSLISCGDTDEAFRVFRRM 194
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 133/330 (40%), Gaps = 41/330 (12%)
Query: 124 MHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD---IRQAWLILV 180
M + RE++ + LH +++ +G G + LE M+++ Y+ I A+ ++
Sbjct: 242 MQTQGREITRSM--LHSFVMS----YGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVL 295
Query: 181 EELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
LV+NK L+ A +F + G+ + Y MI +A+++ +M
Sbjct: 296 VSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYA 355
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
+ ++S + E A+ + M E+ +P+ TYN +IQ R +
Sbjct: 356 PDVVTYTIVISALCKRKMIEQAYGVLQKMR--ENGCEPNIYTYNALIQGLCAVR---RPE 410
Query: 301 DVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR-ALQNYEGGTKVLHNE 359
+ EL+ +M + + PN+ TY +L K + A F AL +V +N
Sbjct: 411 EALELVTLM--EQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNT 468
Query: 360 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQ 419
L CR R+IE ++ L+ M + N P Y TL+ ++ Q
Sbjct: 469 ---------LLNGYCRGSRLIEAMDILKEMHQ-NDCTPDHV-----TYTTLIQGLVQGNQ 513
Query: 420 ---------EEAELGYEIDYIARYISEGGL 440
E GY++++ I GL
Sbjct: 514 LPDALRMHDEMENKGYDVNFDTLNILARGL 543
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 95/251 (37%), Gaps = 8/251 (3%)
Query: 71 IFMEELMQH--ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
I+ ++ H + R R ++ + +A GL P +++ L+ Y AM LK
Sbjct: 428 IYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILK 487
Query: 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELVRNK 187
P H T L + L + ME YD+ L IL L R
Sbjct: 488 EMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVG 547
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+DA+ + R G + Y L I AG+ A + YEM G +N
Sbjct: 548 NHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYN 607
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
++ G + A A M E+ + PDT +YN +I+ + + R QD +L
Sbjct: 608 TMIKGFCRQGRLDDADAMLNFMI--ENGIGPDTGSYNILIKEF---HNQGRTQDADQLYA 662
Query: 308 MMVEDHKRLQP 318
+E L P
Sbjct: 663 TALERGVVLNP 673
>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 109/258 (42%), Gaps = 12/258 (4%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALARLFG 150
+MI G+ P + L+ G A++ +S G++ + +LI + FG
Sbjct: 104 EMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFG 163
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
AT+ + E I D+ + L++ L + +++A K+F K G
Sbjct: 164 LWKEATRTFSQMVG-EGILPDV-VTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVT 221
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ ++ C +A+ + M G +N L++ T G E A F M+
Sbjct: 222 YNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQ 281
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
Y E + P TY +++A + R++ EL M + P++ TY +L++
Sbjct: 282 YEE--LTPSITTYTILLKALYQN---GRIRTAKELFNNMQICGQ--SPSLDTYTVLLDGL 334
Query: 331 TKYCAVTEAIRHFRALQN 348
K + EAI FR+L++
Sbjct: 335 CKNGCIEEAIDVFRSLKS 352
Score = 42.7 bits (99), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 9/178 (5%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
++++ L ++ K+F G+ +Y +I C+ G A+ + EM +
Sbjct: 84 LVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQ 143
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G A +N L+ G+ + A TF M GE + PD T+ +I ++
Sbjct: 144 GIKANVITYNSLIHASCRFGLWKEATRTFSQM-VGEGIL-PDVVTFTTLIDHLSKK---G 198
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
+VQ+ ++ +M++ + PN+ TY L+ + + A+R F + E G K+
Sbjct: 199 KVQEAYKIFELMIKQGE--APNIVTYNSLLNGLCLHHQMDHAVRLFEVM--VERGIKI 252
>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 121/289 (41%), Gaps = 21/289 (7%)
Query: 66 QGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMH 125
Q RL + ++ + +N M+ +G+ ++ ++ YT G E A
Sbjct: 78 QPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSGIQV-VAAYSAMIAIYTRCGFFEKAEK 136
Query: 126 SLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELV 184
++ + + P + + +G +G + I+ ME++ + + ++
Sbjct: 137 IMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNSMITAYG 196
Query: 185 RNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTF 244
+ E A ++F + + GL + Y MI +AG +AL+ M+ G M +
Sbjct: 197 KAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASS 256
Query: 245 HFNHLLS----CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
+FN L+S + GI V A +N +G PD++T + V++AY RA +V
Sbjct: 257 NFNTLISLYGKARNVVGIVRV-LADMKN--FG---CTPDSQTLDAVVRAYERAGQTKKVV 310
Query: 301 DVAELL--GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
V LL VED ++Y L+ + K EA+ F A++
Sbjct: 311 QVLSLLREAGWVED-------TESYGTLLHVYLKCNLQKEALSVFSAMR 352
Score = 39.7 bits (91), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 92/226 (40%), Gaps = 22/226 (9%)
Query: 124 MHSLKREL-SAGVRPLHETLIALARLFGSKGL------ATKGLEILAAMEKINYDIRQAW 176
+H + +E+ G P T + L+G G+ A+K + L +KI +
Sbjct: 520 VHKIFQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGVADKITFST---- 575
Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
L+ + + + G + E Y+ ++ KAG ++ ME
Sbjct: 576 --LINSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEK 633
Query: 237 AGRMATTFHFNHLLSCQA-TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+G +N L++ I E+ A F M+ E+ PD TYN +I+ Y A+
Sbjct: 634 SGLQMDLASYNILINIYGRHTKIAEME-ALFHKMQ--EEGFIPDRWTYNTMIRTYGYADY 690
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
D+ D + M++D + P+ TY +LV F K + EA R
Sbjct: 691 PDKAVDTFK----MMQDSG-IMPDRVTYVMLVAAFEKAGNLLEAAR 731
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 20/260 (7%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
++R + ++ +M A L P + L+ + G+ + A +K ++AGV+P
Sbjct: 325 CKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNK 384
Query: 140 ETLIALARLFGSKGLATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDA 192
T L R G + +L M + I Y++ ++E R+ +DA
Sbjct: 385 ITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNL------IIEGHFRHHSKKDA 438
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
++ G+ Y +MI C++G+ A ++ EM G F + L+S
Sbjct: 439 FRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 498
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
G +A F+ M + + PD YN +I ++ RV++ + M E
Sbjct: 499 YCREGNVSLACEIFDKMT--KVNVLPDLYCYNSLIFGLSKV---GRVEESTKYFAQMQE- 552
Query: 313 HKRLQPNVKTYALLVECFTK 332
+ L PN TY+ L+ + K
Sbjct: 553 -RGLLPNEFTYSGLIHGYLK 571
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 21/219 (9%)
Query: 179 LVEELVRNKYLEDANKV--FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
L+++L+R + KV F+ GA G+ Y +I CK + A ++ EM
Sbjct: 215 LLKDLLRADAMALLWKVREFMVGA--GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRE 272
Query: 237 AGRMATTFHFNHLLSCQATCGIPEVAFATFENME-YGEDYMKPDTETYNCVIQAYTRAES 295
G T +N L++ G E AF ++ME YG + PD TY +I ++
Sbjct: 273 RGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYG---LVPDGFTYGALINGLCKSR- 328
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
R + LL M L+PNV YA L++ F + EA + + + V
Sbjct: 329 --RSNEAKALLDEM--SCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV----AAGV 380
Query: 356 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQ 394
N+ + + +R LC+ G++ L+ M +D+
Sbjct: 381 QPNKITYDN----LVRGLCKMGQMDRASLLLKQMVRDSH 415
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 134/340 (39%), Gaps = 23/340 (6%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+I+++ L + ++ D +V+ M+ G+ R + L+ + +G+ E A L
Sbjct: 595 VIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSG 654
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKY 188
G P +L K IL M K D + L++ L ++
Sbjct: 655 IEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGD 714
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+ A VF GL Y +I CK GD SNA + EM A G F ++
Sbjct: 715 ISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSV 774
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMK--PDTETYNCVIQAYTRAESYDRVQDVAELL 306
L + ++ G E A E M +++ ++N ++ + + ++Q+ +LL
Sbjct: 775 LTTGCSSAGDLEQAMFLIEEM-----FLRGHASISSFNNLVDGFCKR---GKMQETLKLL 826
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD-- 364
+++ + L PN T ++ ++ ++E F LQ + H F D
Sbjct: 827 HVIMG--RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMI 884
Query: 365 -----PLSL---YLRALCREGRIIELLEALEAMAKDNQPV 396
PL + +R C+EG + + L + + + P+
Sbjct: 885 NQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPM 924
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 5/196 (2%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL P ++ GL+ Y NGD E A ++R L G++P I L + K
Sbjct: 554 GLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKV 613
Query: 159 LEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+M + + D R + IL+ L + +E A +V K G +Y +I+
Sbjct: 614 SSTFKSMLDQGVMLDNR-IYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLIS 672
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
CK D A I EM G +N L+ C ++++A +
Sbjct: 673 GLCKTADREKAFGILDEMSKKGVDPNIVCYNALI--DGLCKSGDISYARNVFNSILAKGL 730
Query: 277 KPDTETYNCVIQAYTR 292
P+ TY +I +
Sbjct: 731 VPNCVTYTSLIDGSCK 746
>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Vitis vinifera]
Length = 728
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 132/302 (43%), Gaps = 28/302 (9%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSL----KRELSAGVRPLHETLIALA 146
++ +M AAG P + L+ +G + AM L K+ A V L+ TLI+
Sbjct: 201 LLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADV-VLYGTLISG- 258
Query: 147 RLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
F + G +G E+ M + I+ ++ + LV L R ++AN V A+ G+
Sbjct: 259 --FCNNGNLDRGKELFDEMLGKGISANV-VTYSCLVHGLCRLGQWKEANTVLNAMAEHGI 315
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
Y +I CK G ++A+++ M G + +N LLS G+ AF
Sbjct: 316 HPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFK 375
Query: 265 TFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
M E G+ K D TYN +++ +V + +L M ++ L+PNV T+
Sbjct: 376 ILRMMIEKGK---KADVVTYNTLMKGLCDK---GKVDEALKLFNSMFDNENCLEPNVFTF 429
Query: 324 ALLVECFTKYCAVTEAIR-HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL 382
+L+ K +T+A++ H + ++ G V +N + L + G+I E
Sbjct: 430 NMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYN---------MLLGGCLKAGKIKEA 480
Query: 383 LE 384
+E
Sbjct: 481 ME 482
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 121/318 (38%), Gaps = 24/318 (7%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
RN +I +M +SP S++ L+ + A+ L +AG P
Sbjct: 155 CRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNS 214
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLR 198
T L G + +E+L AM+K +D + L+ N L+ ++F
Sbjct: 215 VTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDE 274
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G+ A Y ++ C+ G A + M G + L+ G
Sbjct: 275 MLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGR 334
Query: 259 PEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
A M E GE+ P TYN ++ + V D ++L MM+E K+
Sbjct: 335 ATHAMDLLNLMVEKGEE---PSNVTYNVLLSGLCKE---GLVIDAFKILRMMIEKGKK-- 386
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP----LSLYLRAL 373
+V TY L++ V EA++ F ++ + E N +P ++ + L
Sbjct: 387 ADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNE----------NCLEPNVFTFNMLIGGL 436
Query: 374 CREGRIIELLEALEAMAK 391
C+EGR+ + ++ M K
Sbjct: 437 CKEGRLTKAVKIHRKMVK 454
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 73/371 (19%), Positives = 144/371 (38%), Gaps = 31/371 (8%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ L + R DA R+ + M+ + P + L+ ++ G E K +
Sbjct: 483 LIDGLGKQGRVDDAYRLYE---QMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMI 539
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYL 189
G P L A G KG + ++ + D+ ++ IL+ LV+ +
Sbjct: 540 HRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDV-MSYSILIHGLVKAGFA 598
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+ ++F + G Y+ I CK+G + A ++ EM+ GR T + +
Sbjct: 599 RETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSV 658
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ A + A+ FE E + ++ + Y+ +I + + D + E L
Sbjct: 659 IDGLAKIDRLDEAYMLFE--EAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELM-- 714
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLY 369
K L PNV T+ L++ K + EA+ F+ ++N +G + S+
Sbjct: 715 ---QKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHI--------TYSIL 763
Query: 370 LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEID 429
+ LCR + + + M K Q + P + Y T+++ L + +
Sbjct: 764 INGLCRVRKFNKAFVFWQEMQK--QGLKPNTI----TYTTMIAG----LAKAGNIAEASS 813
Query: 430 YIARYISEGGL 440
R+ + GG+
Sbjct: 814 LFERFKANGGV 824
Score = 40.4 bits (93), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 52/275 (18%), Positives = 103/275 (37%), Gaps = 12/275 (4%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L+ A+N ++ +M AG P ++ L+++ + ++
Sbjct: 135 LLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKF 194
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANK 194
RP L S + L + M+++ Y++ + ++ R L+ A
Sbjct: 195 RPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALS 254
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDC--KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
+ L A +Y++ I DC KAG A + +E+++ G + + ++
Sbjct: 255 LLDEMKSNCLHADIVLYNVCI--DCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGV 312
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
+ A FE ME + P YN +I Y A +D + E +
Sbjct: 313 LCKGNRLDEAVEIFEQMEQNRNV--PCAYAYNTMIMGYGSAGKFDEAYSLLER-----QK 365
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ P+V Y ++ C K + EA+R F ++
Sbjct: 366 ARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMK 400
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 10/222 (4%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L R DA R+ + DM+ + P F L+ + G+ A + K + V
Sbjct: 754 LSNSGRWTDAARL---LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSV 810
Query: 136 RP---LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDA 192
P + +LI + G G A +++ + K + + L+ ++K +ED
Sbjct: 811 VPNVFTYNSLINGFCIHGCLGDAKYMFDLMVS--KGCFPDVVTYNTLITGFCKSKRVEDG 868
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
K+F GL Y+ +I C+AG + A ++ M G +N LL C
Sbjct: 869 MKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDC 928
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
G E A E+++ E M D TYN +IQ R +
Sbjct: 929 LCNNGKIEKALVMVEDLQKSE--MDVDIITYNIIIQGLCRTD 968
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 113/293 (38%), Gaps = 43/293 (14%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMH-SLKRELSAGVRPLHETLIALARLF 149
+ ++M+ + P F L+ A +E ++ S K EL L+ I L F
Sbjct: 58 LFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTI-LIHCF 116
Query: 150 GSKGLATKGLEILAAMEKINYD--IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+ L +L M K+ Y+ I +L + N+ + DA + + K G
Sbjct: 117 CRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNR-IGDAFSLVILMVKSGYEPN 175
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG---------- 257
+Y+ +I CK G+ + ALE+ EME G A +N LL+ G
Sbjct: 176 VVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLR 235
Query: 258 -------IPEV--------AFATFENMEYGEDYMK--------PDTETYNCVIQAYTRAE 294
P+V F N++ ++ K P+ TYN +I
Sbjct: 236 DMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCM-- 293
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ R+ D + +M K PNV TY L+ F K+ V E ++ F+ +
Sbjct: 294 -HGRLYDAKKTFDLMAS--KGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMS 343
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 10/251 (3%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M GL P + L+ + G+ + AM K+ ++ T L FG G
Sbjct: 460 EMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVG 519
Query: 154 LATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
EI A M ++ +I ++ ILV L +L +A +V+ ++ T I
Sbjct: 520 DIDTAKEIWADM--VSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMI 577
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
+ MI C++G+ S+ +M + G + +N L+ AF + ME
Sbjct: 578 CNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKME 637
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+ + PD TYN ++ + R +++++ +L M+E + + P+ TY L+ F
Sbjct: 638 EKQGGLVPDVFTYNSILHGFCRE---NQMKEAEAVLRKMIE--RGVNPDRSTYTSLINGF 692
Query: 331 TKYCAVTEAIR 341
+TEA R
Sbjct: 693 VSQDNLTEAFR 703
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 53/274 (19%), Positives = 110/274 (40%), Gaps = 57/274 (20%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
LM+ + DA ++ DM + + P F ++ +T +G+ + A+ AG+
Sbjct: 337 LMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGL 396
Query: 136 RPLHETLIALARLFGSKGLATKGL----EIL---AAMEKINYDIRQAWLILVEELVRNKY 188
P + L + + KG+ ++ + E+L AM+ + Y+ ++ L + K
Sbjct: 397 IPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNT------ILHGLCKRKM 450
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
L +A+K+F + GL ++I CK G+ NA+E+ +M+
Sbjct: 451 LGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMK------------- 497
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLG 307
E +K D TYN ++ + + D +++ A+++
Sbjct: 498 ------------------------EKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVS 533
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
K + P ++++LV ++EA R
Sbjct: 534 ------KEILPTPISFSILVNALCSKGHLSEAFR 561
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 4/203 (1%)
Query: 92 IYDMIA-AGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
IY I+ +G+ + + +V A +G E L GV P T L +
Sbjct: 212 IYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYS 271
Query: 151 SKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
S+GL + E++ AM + + ++ L ++ E A +VF + GL
Sbjct: 272 SQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDST 331
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y ++ E CK GD I +M + + F+ ++S G + A F ++
Sbjct: 332 TYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSV 391
Query: 270 EYGEDYMKPDTETYNCVIQAYTR 292
+ E + PD Y +IQ Y R
Sbjct: 392 K--EAGLIPDNVIYTILIQGYCR 412
Score = 46.2 bits (108), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ LVR ++E A +++ ++ G+ ++M+ CK G E++ G
Sbjct: 196 LIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKG 255
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+N L+S ++ G+ E AF M P TYN VI + Y+R
Sbjct: 256 VYPDIVTYNTLISAYSSQGLMEEAFELMHAMP--SKGFSPGVYTYNTVINGLCKHGKYER 313
Query: 299 VQDV-AELLGMMVEDHKRLQPNVKTY-ALLVECFTKYCAV-TEAI 340
++V AE+L L P+ TY +LL+E K AV TE I
Sbjct: 314 AKEVFAEML------RSGLSPDSTTYRSLLMEACKKGDAVETENI 352
Score = 39.3 bits (90), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 118/318 (37%), Gaps = 51/318 (16%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R +V +M+ +GLSP ++ L++ GD + S V P ++
Sbjct: 313 RAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMM 372
Query: 147 RLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
LF G K L +++ + GL
Sbjct: 373 SLFTRSGNLDKALMYFNSVK----------------------------------EAGLIP 398
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
+ IY ++I C+ G S A+ + EM G +N +L C + A
Sbjct: 399 DNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTIL--HGLCKRKMLGEADK 456
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
E E + PD+ T +I + + +Q+ EL M E KR++ +V TY L
Sbjct: 457 LFNEMTERGLFPDSYTLTILIDGHCK---LGNLQNAMELFKKMKE--KRIKLDVVTYNTL 511
Query: 327 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEAL 386
++ F K + A + + + E +L +F S+ + ALC +G + E
Sbjct: 512 LDGFGKVGDIDTAKEIWADMVSKE----ILPTPISF----SILVNALCSKGHLSEAFRVW 563
Query: 387 EAMAKDNQPVPPRAMILS 404
+ M ++ + P MI +
Sbjct: 564 DEMI--SKSIKPTVMICN 579
>gi|115456691|ref|NP_001051946.1| Os03g0856100 [Oryza sativa Japonica Group]
gi|41393252|gb|AAS01975.1| putative chloroplastic RNA-binding protein, with alternative
splicing isoforms [Oryza sativa Japonica Group]
gi|113550417|dbj|BAF13860.1| Os03g0856100 [Oryza sativa Japonica Group]
gi|222626198|gb|EEE60330.1| hypothetical protein OsJ_13428 [Oryza sativa Japonica Group]
Length = 640
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 16/249 (6%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P ++ ++ Y G E + R +G +P H LA++FG G
Sbjct: 178 GVLPDEVTYSAILDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGI 237
Query: 159 LEILAAMEKI----NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+ M ++ N + A L+E L + A +F G+ +
Sbjct: 238 QFVFKEMREVGIKPNIFVYNA---LLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTAL 294
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI---PEVAFATFENMEY 271
+A +AL++ +M A N LLS A G+ E F+ ++ +
Sbjct: 295 AKIYGRARWGRDALQLWEQMREKKLPADNILCNTLLSMCADVGLVGEAEQLFSEMKDPDL 354
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
G D KPD +Y +I Y + DR +L MVE ++PN+ +Y ++++C
Sbjct: 355 G-DVPKPDKWSYTAMINIYGSSGDADRA---LQLFAEMVESG--IEPNIMSYTIVIQCLG 408
Query: 332 KYCAVTEAI 340
K + EA+
Sbjct: 409 KAGRIQEAV 417
>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Cucumis sativus]
gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Cucumis sativus]
Length = 704
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 48/247 (19%)
Query: 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILA 163
P +F ++ + + G+++G ++ + + G++P L+ L + G A + +I
Sbjct: 284 PATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKP---NLVIYNCLLDAMGRAKRPWQIKT 340
Query: 164 AM-EKINYDIRQAWLI---LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC 219
E I +W L+ R +Y EDA V+ + GL+ +Y+ ++A
Sbjct: 341 IYKEMIKNGFSPSWATYASLLRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCA 400
Query: 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 279
G + A+EI +M+++G TC PD
Sbjct: 401 DVGYVNEAVEIFQDMKSSG----------------TCS--------------------PD 424
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+ T++ +I Y+ +V + E+L MVE PN+ L++C+ K V +
Sbjct: 425 SWTFSSMITIYSCG---GKVSEAEEMLNDMVE--AGFDPNIFVLTSLIQCYGKAKRVDDV 479
Query: 340 IRHFRAL 346
+R F L
Sbjct: 480 VRTFNQL 486
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 770 WEVELAIQIMLKVIELGGTPTIGDCAVIIRAAIRAPLPSAFLKILQKTHSLGYVFGSPLY 829
W+++ I ++I+ G +P+ A ++RA RA L + ++ G LY
Sbjct: 336 WQIK---TIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALIVYKEMKEKGLQLNVILY 392
Query: 830 DEIISLCLDLGELDAAVAIVADMETTGIAVPDQ-TLDRVITSRQTG 874
+ ++++C D+G ++ AV I DM+++G PD T +IT G
Sbjct: 393 NTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITIYSCG 438
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 84/374 (22%), Positives = 139/374 (37%), Gaps = 33/374 (8%)
Query: 22 GVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHAR 81
G+V S MSS K R K + Q ++T G + I + R
Sbjct: 368 GIVTFNSFMSSLCKHGRSKDAEEIFQ-----YMTTKGHMPDLVSYS---ILLHGYATEGR 419
Query: 82 NRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET 141
D +N++ + M G+ F+ L+ A+ G + AM GVRP T
Sbjct: 420 FAD---MNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVT 476
Query: 142 LIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGA 200
L F G +E + M I + + L+ + L A ++
Sbjct: 477 YSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMM 536
Query: 201 KGGL-RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
G+ R + +I C G +A ++ + G T FN L+ G
Sbjct: 537 SKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKM 596
Query: 260 EVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E AF + M G ++PD TYN ++ Y ++ ++ D L M+ HK+++P
Sbjct: 597 EKAFGVLDAMVSVG---IEPDVVTYNTLVSGYCKS---GKIDDGLILFREML--HKKVKP 648
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCRE-- 376
TY+++++ + A + F + + GT V D + L+ LCR
Sbjct: 649 TTVTYSIVLDGLFHAGRTSAAKKMFHEM--IDSGTAVDI------DTYKILLKGLCRNDL 700
Query: 377 -GRIIELLEALEAM 389
I L L AM
Sbjct: 701 TDEAITLFHKLGAM 714
Score = 40.8 bits (94), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 25/213 (11%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+++ K+F + GL ++ ++ CK G +A EI M G M ++ L
Sbjct: 351 KESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSIL 410
Query: 250 LSCQATCGIPEVAFATFENMEY--GEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELL 306
L AT E FA N+ + + + + +N +I A+ + D V E+
Sbjct: 411 LHGYAT----EGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQ 466
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN--YEGGTKVLHNEGNFGD 364
G + ++P+V TY+ L+ F + + +A+ F + + E T V H+
Sbjct: 467 G------QGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHS------ 514
Query: 365 PLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
+ C G +++ E + M P P
Sbjct: 515 ----LIHGFCMHGDLVKAKELVSEMMSKGIPRP 543
>gi|357155105|ref|XP_003577009.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g13800-like [Brachypodium distachyon]
Length = 821
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 3/200 (1%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M+ GLSP + L+ Y L GD + A + + L A V+P T LA +G
Sbjct: 425 EMMTVGLSPDRIHYTCLIKGYCLKGDIQNARQAFEEMLKANVKPDVVTYNILASGLSKRG 484
Query: 154 LATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
L + +++ ME + ++++ R L +A +F + G+ + +Y
Sbjct: 485 LVMEVFDLIGHMEDRGLQPNSLTYGVVIDGFCRGDNLSEAEVLFNIVEEKGIDNIEVLYS 544
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
M+ G NA + + G++ F + L+S G + A M
Sbjct: 545 SMVCGYLHKGWTDNAYVLFLRVAKQGKLVDRFSCSKLISDLCRDGNSQGASTVCSTMLEK 604
Query: 273 EDYMKPDTETYNCVIQAYTR 292
D PD +Y+ +I AY +
Sbjct: 605 NDV--PDLISYSKLISAYCQ 622
Score = 47.4 bits (111), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F + GL +Y++ + CK G+ A+++ EM G H+ L+
Sbjct: 388 FQKFRDSGLHIDGVLYNIAMDAYCKLGNMDEAVKLLGEMMTVGLSPDRIHYTCLIKGYCL 447
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G + A FE M +KPD TYN + ++ V +V +L+G M ED +
Sbjct: 448 KGDIQNARQAFEEMLKAN--VKPDVVTYNILASGLSKR---GLVMEVFDLIGHM-ED-RG 500
Query: 316 LQPNVKTYALLVECFTKYCAVTEA 339
LQPN TY ++++ F + ++EA
Sbjct: 501 LQPNSLTYGVVIDGFCRGDNLSEA 524
>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Brachypodium distachyon]
Length = 676
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 128/333 (38%), Gaps = 37/333 (11%)
Query: 98 AGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG---- 153
GL P RSF L+V +G E L G + T + R+F KG
Sbjct: 179 GGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRD 238
Query: 154 ---LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
L + LE+ +NY AW ++ L + Y++ A V GL+
Sbjct: 239 VSELFRRMLEMGTPPNVVNY---TAW---IDGLCKRAYVKQAFYVLEEMVAKGLKPNVYT 292
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
+ +I CK G A + ++ + H + + C ++A A
Sbjct: 293 HTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVH-TYTVMIGGYCKEGKLARAEMLLGR 351
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E + P+T TY +I + + S++ EL+ M + QPN+ TY L++
Sbjct: 352 MVEQGLAPNTNTYTTLISGHCKEGSFN---CAFELMNKMRREG--FQPNIYTYNALIDGL 406
Query: 331 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL--SLYLRALCREGRIIELLEALEA 388
K + EA + R + +N+G D + ++ + C++G I L+
Sbjct: 407 CKKGKIQEAYKVLR----------MANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNR 456
Query: 389 MAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEE 421
MA +N P Y TL++ + + Q E
Sbjct: 457 MA-ENGCHPD-----IHTYTTLIARYCQQRQME 483
Score = 46.6 bits (109), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 82/391 (20%), Positives = 143/391 (36%), Gaps = 68/391 (17%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P ++ ++ Y G A L R + G+ P T L +G E+
Sbjct: 324 PNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFEL 383
Query: 162 LAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220
+ M + + + L++ L + +++A KV GL+ Y +MI E CK
Sbjct: 384 MNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCK 443
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
G I Y ++ RMA E+ PD
Sbjct: 444 QG------HITYALDLFNRMA-------------------------------ENGCHPDI 466
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
TY +I Y + + Q + + + +E L P +TY ++ + K T A+
Sbjct: 467 HTYTTLIARYCQQRQMEESQKLFDKC-LAIE----LVPTKQTYTSMIAGYCKVGKSTSAL 521
Query: 341 RHF-RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPR 399
R F R +QN G + + +G +S LC+E R+ E E M D + VP
Sbjct: 522 RVFERMVQN---GCQA--DSITYGALIS----GLCKESRLEEARALYEGML-DKRLVPCE 571
Query: 400 ------AMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGK 453
A R+ + +V+ I ++ + ++ + R +S G + ++ +
Sbjct: 572 VTPVTLAFEYCRREKAVVAVSILDRLDKRRKNHTVNVLVRKLSAIGHVEDASLFLKKALD 631
Query: 454 TPLDPDAVGFIYSNPMETSFKQRCLEDGKKY 484
L D + + TSF C + KKY
Sbjct: 632 VDLAVDRLAY-------TSFINSCYAN-KKY 654
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++I+ +AG +A++I E+E + +N L++C G + A F+ M+
Sbjct: 468 YNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQ 527
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E + PD TY+ +I+ + + D+V+ L M+ + PN+ TY +L++C
Sbjct: 528 --EKGLNPDVVTYSTLIECFGKT---DKVEMACSLFDEMIAE--GCSPNLVTYNILLDCL 580
Query: 331 TKYCAVTEAIRHFRALQ 347
+ EA+ + L+
Sbjct: 581 ERSGRTAEAVDLYAKLK 597
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 102/253 (40%), Gaps = 9/253 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G + +++ ++ A + A+ + + G +P T L + ++G
Sbjct: 284 MLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQ 343
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
K L+ + M K Y +Q + V L + + +A+++F + + Y M
Sbjct: 344 LNK-LDNIVEMSK-KYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSM 401
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
+ C +G + A+++ T +N + + +E M+ +D
Sbjct: 402 LESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMK--QD 459
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
PD TYN +I +Y RA D + E L ++ QP+V +Y L+ C K
Sbjct: 460 GPPPDIFTYNILISSYGRAGRVDSAVKIFEEL-----ENSNCQPDVISYNSLINCLGKNG 514
Query: 335 AVTEAIRHFRALQ 347
V EA F+ +Q
Sbjct: 515 DVDEAHMRFKEMQ 527
Score = 43.1 bits (100), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 18/213 (8%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
A+ +L++ L +++ ++ A KVF + Y +MI KAG +L + M
Sbjct: 225 AFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAM 284
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
G +N ++ A + + A F M E+ +P+ TY+ ++
Sbjct: 285 LEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMV--ENGCQPNEFTYSVLLNVLVAEG 342
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354
+++ ++ E+ + N + YA V +K +EA R F + N
Sbjct: 343 QLNKLDNIVEM--------SKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWN------ 388
Query: 355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
+H++G+ +S+ L +LC G+I E ++ L
Sbjct: 389 -VHDKGDKDAYMSM-LESLCSSGKIAEAIDLLN 419
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 106/255 (41%), Gaps = 18/255 (7%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS-AGVRPLHET 141
RDA +V D++ +P S+ L+ G E A LK ++ G +P T
Sbjct: 247 RDALKVFDLMSR--EGTCAPNSVSYSILIHGLCEVGRLEEAF-GLKDQMGEKGCQPSTRT 303
Query: 142 LIALARLFGSKGLATKGL----EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFL 197
L + +GL K E++A K N + +L++ L R+ +E+AN V
Sbjct: 304 YTVLIKALCDRGLIDKAFNLFDEMIARGCKPNV---HTYTVLIDGLCRDGKIEEANGVCR 360
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ K G+ + Y+ +I CK G A E+ ME FN L+ G
Sbjct: 361 KMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVG 420
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
P A + M ++ + PD +YN +I R E + V +LL M + L+
Sbjct: 421 KPYKAVHLLKRML--DNGLSPDIVSYNVLIDGLCR-EGHMNVA--YKLLTSM--NSFDLE 473
Query: 318 PNVKTYALLVECFTK 332
P+ T+ ++ F K
Sbjct: 474 PDCLTFTAIINAFCK 488
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 20/216 (9%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
+V L +N Y E A + K G I ++ C+ + +AL++ M G
Sbjct: 201 IVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREG 260
Query: 239 RMA-TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
A + ++ L+ G E AF + M GE +P T TY +I+A D
Sbjct: 261 TCAPNSVSYSILIHGLCEVGRLEEAFGLKDQM--GEKGCQPSTRTYTVLIKALCDRGLID 318
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+ + L M+ + +PNV TY +L++ + + EA G + +
Sbjct: 319 KAFN---LFDEMIA--RGCKPNVHTYTVLIDGLCRDGKIEEA----------NGVCRKMV 363
Query: 358 NEGNFGDPLSL--YLRALCREGRIIELLEALEAMAK 391
+G F ++ + C++GR++ E L M K
Sbjct: 364 KDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEK 399
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 120/304 (39%), Gaps = 31/304 (10%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M A G G + +V A NG E A + + L G L ++ I + L G
Sbjct: 186 MEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGF--LLDSHIVTSLLLG---- 239
Query: 155 ATKGLEILAAMEKINYDIRQ--------AWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+GL + A++ + R+ ++ IL+ L LE+A + + + G +
Sbjct: 240 FCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQP 299
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
+ Y ++I C G A + EM A G + L+ G E A
Sbjct: 300 STRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVC 359
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
M +D + P TYN +I Y + RV ELL +M + + +PNV+T+ L
Sbjct: 360 RKMV--KDGIFPSVITYNALINGYCKD---GRVVPAFELLTVM--EKRACKPNVRTFNEL 412
Query: 327 VECFTKYCAVTEAIRHF-RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEA 385
+E + +A+ R L N V +N + + LCREG + +
Sbjct: 413 MEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYN---------VLIDGLCREGHMNVAYKL 463
Query: 386 LEAM 389
L +M
Sbjct: 464 LTSM 467
>gi|125558386|gb|EAZ03922.1| hypothetical protein OsI_26055 [Oryza sativa Indica Group]
Length = 658
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M AG + +N LL G+ + A F+ M ED ++PD +YN +I+ Y RA
Sbjct: 213 MRLAGVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMST-EDQVRPDVVSYNILIKGYCRA 271
Query: 294 -ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
++D + ++E+ ++ +L P+ TY L++C I F+ ++ G
Sbjct: 272 GRAHDAMARLSEM-----QEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMG 326
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391
+ + L + ALC++G+ E + E M K
Sbjct: 327 NDIPQHA------YVLVIGALCKDGKPFEGMAVFERMLK 359
>gi|30699392|ref|NP_178029.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806390|sp|A3KPF8.1|PP131_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g79080, chloroplastic; Flags: Precursor
gi|126352286|gb|ABO09888.1| At1g79080 [Arabidopsis thaliana]
gi|332198080|gb|AEE36201.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 576
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 17/247 (6%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA---- 144
N ++ +M +P +++ L+ + +G E A+ LK E+S G T +
Sbjct: 301 NSLLAEMDGGDRAPSVVTYNILINSLAFHGRTEQALQVLK-EMSKGNHQFRVTATSYNPV 359
Query: 145 LARLF--GSKGLATKGL-EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
+ARL G L K L E++ K N A L E N +++A + +
Sbjct: 360 IARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNAIGSLCEH---NSKVQEAFYIIQSLSN 416
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
T + Y +I C+ G+ A ++ YEM G ++ L+ G+
Sbjct: 417 KQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRGLCLEGMFTG 476
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A ME E+ KP + +N +I + D +V E MMVE K+ PN
Sbjct: 477 AMEVLSIMEESEN-CKPTVDNFNAMILGLCKIRRTDLAMEVFE---MMVE--KKRMPNET 530
Query: 322 TYALLVE 328
TYA+LVE
Sbjct: 531 TYAILVE 537
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 149/402 (37%), Gaps = 81/402 (20%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
+ +L + R + A RV ++ M+++G+ P ++ LV G+ AM +++
Sbjct: 112 LLYDLCKANRLKKAIRVIEL---MVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKME 168
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILA-AMEKINYDIRQAWLILVEELVRNKYLE 190
G T AL R G + L+ + M+K + L+E + + +
Sbjct: 169 DHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYKERGTD 228
Query: 191 DANK----VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+A K + ++G + L + Y++++ CK G +A+ + E+ A G A +
Sbjct: 229 EAVKLLDEIIVKGGEPNLVS----YNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSY 284
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI------------------- 287
N LL C G E A + M+ G+ P TYN +I
Sbjct: 285 NILLRCLCCDGRWEEANSLLAEMDGGDR--APSVVTYNILINSLAFHGRTEQALQVLKEM 342
Query: 288 -----QAYTRAESYD----------RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
Q A SY+ +V V + L M+ ++R +PN TY +
Sbjct: 343 SKGNHQFRVTATSYNPVIARLCKEGKVDLVVKCLDEMI--YRRCKPNEGTYNAIGSLCEH 400
Query: 333 YCAVTEAIRHFRALQN---------YEGGTKVLHNEGN-FG-------------DP---- 365
V EA ++L N Y+ L +GN F DP
Sbjct: 401 NSKVQEAFYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHT 460
Query: 366 LSLYLRALCREGRIIELLEALEAMAKDNQPVPP----RAMIL 403
S +R LC EG +E L M + P AMIL
Sbjct: 461 YSALIRGLCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMIL 502
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 119/300 (39%), Gaps = 22/300 (7%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM+A G P +++ ++ G+ A LK+ AG +P T L
Sbjct: 188 DMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDR 247
Query: 154 LATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
L + L+I + M+ I+ DI + L++ L + ++A+ + + +
Sbjct: 248 LVNEALDIFSYMKAKGISPDIF-TYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTF 306
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
++++ CK G S AL + M G ++ L+ + A F M
Sbjct: 307 NVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMI- 365
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
KP+ +YN +I Y +A+ R+ + +L M+ H+ L PN +Y L+ F
Sbjct: 366 -TKGCKPNIFSYNILINGYCKAK---RIDEAMQLFNEMI--HQGLTPNNVSYNTLIHGFC 419
Query: 332 KYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL--SLYLRALCREGRIIELLEALEAM 389
+ + EA FR + GN D S+ L C++G + + AM
Sbjct: 420 QLGKLREAQDLFRN----------MCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAM 469
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 19/197 (9%)
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
V + K GL+ T + +I CK G+ + A+E+ +M A G + +N +++
Sbjct: 150 VLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIIN--G 207
Query: 255 TCGIPEVAFAT--FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
C I E A A + ME E +P+ TY+ +I + R + D+ +
Sbjct: 208 LCKIGETAAAAGLLKKME--EAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYM-----K 260
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 372
K + P++ TY L++ K+ EA AL N ++ + F ++ +
Sbjct: 261 AKGISPDIFTYTSLIQGLCKFSRWKEA----SALLNEMTSLNIMPDIVTF----NVLVDT 312
Query: 373 LCREGRIIELLEALEAM 389
C+EG++ E L L+ M
Sbjct: 313 FCKEGKVSEALGVLKTM 329
Score = 45.8 bits (107), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 115/304 (37%), Gaps = 43/304 (14%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R+R D+ M A G+SP ++ L+ + A L S + P
Sbjct: 244 CRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDI 303
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINY------------------DIRQA------ 175
T L F +G ++ L +L M ++ D+ +A
Sbjct: 304 VTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHV 363
Query: 176 ------------WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGD 223
+ IL+ + K +++A ++F GL + Y+ +I C+ G
Sbjct: 364 MITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGK 423
Query: 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY 283
A ++ M G + F ++ LL G AF F M+ Y+KP+ Y
Sbjct: 424 LREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQ--STYLKPNLVMY 481
Query: 284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
++ A ++ ++ +D +L + + LQP+V+ Y ++ K + EA+ F
Sbjct: 482 TILVHAMCKSGNH---KDARKLFSELFV--QGLQPHVQLYTTIINGLCKEGLLDEALEAF 536
Query: 344 RALQ 347
R ++
Sbjct: 537 RNME 540
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 83/207 (40%), Gaps = 3/207 (1%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
D + + MI G P S++ L+ Y + AM + G+ P + +
Sbjct: 353 DVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYN 412
Query: 144 ALARLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
L F G + ++ M N + IL++ + YL A ++F
Sbjct: 413 TLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQST 472
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
L+ +Y +++ CK+G+H +A ++ E+ G + +++ G+ + A
Sbjct: 473 YLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEA 532
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQA 289
F NME D PD +YN +I+
Sbjct: 533 LEAFRNME--ADGCPPDEISYNVIIRG 557
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 121/304 (39%), Gaps = 33/304 (10%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHS----LKRELSAGVRPLHETL 142
R DVI DM G+SP +++ L+ Y G G M+ LK ++ G+ P T
Sbjct: 173 RAGDVIEDMKVWGVSPNVITYNTLIDGYCKMG-RIGKMYKADAILKEMVAKGICPNEVTY 231
Query: 143 IALARLFGSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKV 195
L F + + + M++ + Y+ IL+ L + +++A +
Sbjct: 232 NILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYN------ILINGLCSDGKVDEAVAL 285
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+ L ++++I CK + A+ + +ME G + L+
Sbjct: 286 RDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCK 345
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G E AFA + M + + P+ TYNC+I R V+ L+ MV K+
Sbjct: 346 DGRMEDAFALYNMMI--DRGIFPEVSTYNCLIAGLCRKGD---VKAARSLMNEMVS--KK 398
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCR 375
L +V TY +L++ K +A++ + +E G H N + CR
Sbjct: 399 LSADVVTYNILIDSLCKKGESRKAVKLLDEM--FEKGLNPSHVTYN------TLMDGYCR 450
Query: 376 EGRI 379
EG +
Sbjct: 451 EGNL 454
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 95/242 (39%), Gaps = 8/242 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M GL P +++ L+ +G + A+ + +S+ + P T L F
Sbjct: 250 VFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFC 309
Query: 151 SKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+ + + MEK D + L++ ++ +EDA ++ G+
Sbjct: 310 KNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVS 369
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y+ +IA C+ GD A + EM + A +N L+ G A + M
Sbjct: 370 TYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEM 429
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
E + P TYN ++ Y R + A L+ + K Q NV T+ +L++
Sbjct: 430 F--EKGLNPSHVTYNTLMDGYCREGNLR-----AALIVRTRMERKGKQANVVTHNVLIKG 482
Query: 330 FT 331
F
Sbjct: 483 FC 484
>gi|356532361|ref|XP_003534742.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 646
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 6/170 (3%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ + R K DA ++ GL Y ++ C+A + +AL + EM+ G
Sbjct: 267 LLYAMGRAKRARDAKAIYEEMINNGLTPNWPTYAALLQAYCRARFNRDALNVYKEMKEKG 326
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ +N L A G A FE+M+ +PD+ TY +I Y+ S +
Sbjct: 327 KDLDILLYNMLFDMCANVGCEGEAVKIFEDMK-SSGTCRPDSFTYASLINMYS---SIGK 382
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
+ ++ + M+E +PN+ LV C+ K + ++ F L +
Sbjct: 383 ISEMEAMFNEMMESG--FEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMD 430
>gi|226493938|ref|NP_001152190.1| ATP binding protein [Zea mays]
gi|195653677|gb|ACG46306.1| ATP binding protein [Zea mays]
gi|413926813|gb|AFW66745.1| ATP binding protein [Zea mays]
Length = 376
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 110/259 (42%), Gaps = 24/259 (9%)
Query: 137 PLHETLIALARLFGSKGLATKG--LEILA-----AMEKINYDIRQAWLILVEELVRNKYL 189
P H + L RLF ++ +A L+ L + N R A L L + + R
Sbjct: 105 PTHSLALLLRRLFTTRSVAAARSLLDKLHPSGEDGCPRPNPAPRGALLALADAVCRRGEP 164
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+ ++V G+RA +Y+ ++ + A D L + +M + G +N L
Sbjct: 165 REISRVLPVLRDHGVRADAHLYNALMKANVAADDPGAVLRVFRQMRSDGVDPDLVTYNTL 224
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT-RAESYDRVQDVAELLGM 308
+ A G+ A A + M E ++ PD TY ++ + ++ ++ + E+ G
Sbjct: 225 IFGLARAGMVAKARAFLDAMA-AEGHL-PDVVTYTSLMNGMCVKGDALGALKLLEEMQG- 281
Query: 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL 368
K QPN +TY+ L+ K + +A+ ++++ GTK+ +
Sbjct: 282 -----KGCQPNERTYSTLLMGLCKNKKLDKAVEVYKSMA--AAGTKLESPA------YAS 328
Query: 369 YLRALCREGRIIELLEALE 387
++RALCR G + + E +
Sbjct: 329 FVRALCRSGSVADAYEVFD 347
>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 74/373 (19%), Positives = 150/373 (40%), Gaps = 49/373 (13%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ +G+ S +V G+ E + +K G++P T + + K
Sbjct: 196 MVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAY-LKHR 254
Query: 155 ATKGLE-ILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
G+E IL M+K + Y+ + + +L+E V+N + D K+F + G+ + +Y
Sbjct: 255 DFSGVEKILKVMKKDGVVYN-KVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVY 313
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+I+ +C+ G+ A + E+ G + ++ + L+ C + E+ A E
Sbjct: 314 TSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALI--DGVCKVGEMGAAEILMNEM 371
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ +N +I Y R D + +++ + K Q +V T + CF
Sbjct: 372 QSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVM-----EKKGFQADVFTCNTIASCFN 426
Query: 332 KYCAVTEAIRH-FRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
+ EA + FR + EGG ++ + ++ + + +Y C+EG + E M+
Sbjct: 427 RLKRYDEAKQWLFRMM---EGGVRL--STVSYTNLIDVY----CKEGNVEEAKRLFVEMS 477
Query: 391 KDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKRWVPR 450
++ V P A+ Y ++ + Y +G + RK W
Sbjct: 478 --SKEVQPNAI----TYNVMIYA--------------------YCKQGKVKEARKLWANM 511
Query: 451 RGKTPLDPDAVGF 463
+ +DPD+ +
Sbjct: 512 KA-NGMDPDSYTY 523
Score = 47.0 bits (110), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 102/259 (39%), Gaps = 16/259 (6%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL-SAGVRP 137
+ R + R + ++ GL P ++ L+ G+ GA L E+ S GV
Sbjct: 320 NCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEM-GAAEILMNEMQSKGVNI 378
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELV----RNKYLEDAN 193
L + KG+ + I MEK + QA + + R K ++A
Sbjct: 379 TQVVFNTLINGYCRKGMIDEASMIYDVMEKKGF---QADVFTCNTIASCFNRLKRYDEAK 435
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
+ R +GG+R + Y +I CK G+ A + EM + +N ++
Sbjct: 436 QWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAY 495
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
G + A + NM+ + M PD+ TY +I A++ D + +G+
Sbjct: 496 CKQGKVKEARKLWANMK--ANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGL----- 548
Query: 314 KRLQPNVKTYALLVECFTK 332
K L N TY +++ +K
Sbjct: 549 KGLDQNSVTYTVMISGLSK 567
>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 481
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 9/175 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
W+++++ + ++++ K+F R + G+ T + YD + + G + A +M
Sbjct: 83 WVMMIDSYGKQGIVQESVKLFDRMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKML 142
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+ G T FN L+ G E A FE+M+ E + PD TYN +I Y
Sbjct: 143 SEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSRE--ISPDVVTYNTMINGYY---- 196
Query: 296 YDRVQDVAELLGMMVEDHKR-LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
RV+ + E VE R ++P V TY L++ + V +A+R ++ +
Sbjct: 197 --RVKKMXEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF 249
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 7/166 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
++ +L+ L ++ + A + G+RA Y +I C A + A+E+ EM
Sbjct: 117 SYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEM 176
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+G ++ LL G E F +E E ++PD Y +I + +
Sbjct: 177 CESGIEPNVVVYSSLLQGYCKSGRWEDVGKVF--VEMSEKGIEPDVVMYTGLIDSLCKVG 234
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
+ V + MMV + L+PNV TY +L+ C K +V EAI
Sbjct: 235 KAKKAHGVMD---MMVR--RGLEPNVVTYNVLINCMCKEGSVKEAI 275
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 93/228 (40%), Gaps = 6/228 (2%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P S+ L+ A + + A+ L+ SAGVR T L R K +E+
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172
Query: 162 LAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220
+ M + + + L++ ++ ED KVF+ ++ G+ +Y +I CK
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
G A + M G +N L++C G + A + M E + PD
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMS--EKGVAPDV 290
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
TYN +I+ + D + LL MV ++PNV T+ +++
Sbjct: 291 VTYNTLIKGLSDVLEMD---EAMWLLEEMVRGKNIVKPNVVTFNSVIQ 335
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 21/157 (13%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ L + + A+ V + GL Y+++I CK G A+ + +M G
Sbjct: 226 LIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKG 285
Query: 239 RMATTFHFNHLLSCQATCGIPEV-----AFATFENMEYGEDYMKPDTETYNCVIQAYT-- 291
+N L+ G+ +V A E M G++ +KP+ T+N VIQ
Sbjct: 286 VAPDVVTYNTLIK-----GLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDI 340
Query: 292 -RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
R +V+ + E G MV N+ TY LL+
Sbjct: 341 GRMRQAFQVRAMMEETGCMV--------NLVTYNLLI 369
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 91/225 (40%), Gaps = 48/225 (21%)
Query: 85 APRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHET 141
A + + V+ M+ GL P +++ L+ G + A+ LK+ GV P + T
Sbjct: 236 AKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNT 295
Query: 142 LIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
LI KGL+ LE+ AM WL+ EE+VR K + N V
Sbjct: 296 LI--------KGLSDV-LEMDEAM----------WLL--EEMVRGKNIVKPNVVTFNSVI 334
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
GL C G A ++ ME G M +N L+ G+ V
Sbjct: 335 QGL--------------CDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIG-----GLLRV 375
Query: 262 AFATFENMEYGEDY----MKPDTETYNCVIQAYTRAESYDRVQDV 302
+ ME ++ ++PD+ TY+ +I+ + + DR +D+
Sbjct: 376 -HKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDL 419
>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Vitis vinifera]
Length = 476
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 8/144 (5%)
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+EDA FL + + A +Y+ +I CK NA + EM+ G + N
Sbjct: 266 IEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNI 325
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
+L+ +CG + AF F M D PD +TY +I+ + + + V + + +
Sbjct: 326 ILNSLISCGDTDEAFRVFRRMIKVCD---PDADTYTMMIKMFCENDKLEMALKVWKYMRL 382
Query: 309 MVEDHKRLQPNVKTYALLVECFTK 332
K+ P++ T+++L+ K
Sbjct: 383 -----KQFVPSMHTFSVLINGLCK 401
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 8/202 (3%)
Query: 145 LARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
L+ L SK + K EI M+ + + IL+E + L A ++F G
Sbjct: 153 LSALCKSKNV-VKAQEIFNGMKDQFIPDSKTYSILLEGWGKAPNLPKAREIFREMVDMGC 211
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
Y +M+ CKAG A+ I EM+++ T+F ++ L+ E A
Sbjct: 212 DPDIVTYGIMVDILCKAGRVDEAVGIVKEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVY 271
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
TF +ME E ++ D YN +I A+ + +++++ +L M D K ++PN +T
Sbjct: 272 TFLDMERNE--IEADVAVYNALIGAFCKV---NKLKNAYRVLNEM--DCKGIRPNSRTCN 324
Query: 325 LLVECFTKYCAVTEAIRHFRAL 346
+++ EA R FR +
Sbjct: 325 IILNSLISCGDTDEAFRVFRRM 346
>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 654
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 99/249 (39%), Gaps = 14/249 (5%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATK---G 158
P + F L+ + G A H L + G+ P ++ L G A K
Sbjct: 259 PSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDMGIEP---DIVVYNNLLGGYAQAGKMGDA 315
Query: 159 LEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
++L M + + ++ +L++ L +++ LE+A ++F+ G +A Y +I+
Sbjct: 316 YDLLKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLISG 375
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
CK G E+ EM G + H++ E M+ +
Sbjct: 376 FCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMLAHEKKEELEECKELVNEMQ--KIGCA 433
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
PD YN VI+ A V++ +L M + L P + T+ +++ F + +
Sbjct: 434 PDLSIYNTVIRL---ACKLGEVKEGIQLWNEM--ESSGLSPGMDTFVIMINGFLEQGCLV 488
Query: 338 EAIRHFRAL 346
EA +F+ +
Sbjct: 489 EACEYFKEM 497
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 114/261 (43%), Gaps = 14/261 (5%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
+V+ M+ G+ P +++ ++ Y +G + A+ +LK+ S GV P T +L
Sbjct: 230 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYL 289
Query: 150 GSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
G +T+ +I +M K + DI + L++ + + ++ K+F + G++
Sbjct: 290 CKNGRSTEARKIFDSMTKRGLEPDI-ATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPD 348
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ +I C AG A ++ M + G + L++ + A A F+
Sbjct: 349 IITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFK 408
Query: 268 NMEYGEDYMKPDTETYNCVIQA--YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
M + P+ TYN ++Q +TR R EL + + +L+ + TY +
Sbjct: 409 EMV--SSGVSPNIITYNIILQGLFHTR-----RTAAAKELYVSITKSGTQLE--LSTYNI 459
Query: 326 LVECFTKYCAVTEAIRHFRAL 346
++ K EA+R F+ L
Sbjct: 460 ILHGLCKNNLTDEALRMFQNL 480
>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 920
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 113/271 (41%), Gaps = 15/271 (5%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
+F + H + +VND+ +M A GLSP ++ L+ + G+ A +
Sbjct: 571 MFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEM 630
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE 190
++ G+ P AL F +G + +L + +N D+ I E+ + ++
Sbjct: 631 VNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKL--VNIDMIPGCSISTIEIDKISHVV 688
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
D A G + + +++++I CK+G ++A + + + F ++ L+
Sbjct: 689 DTI------ADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLI 742
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
A G + AF+ + M + P+ TYN +I ++ R ++ L
Sbjct: 743 HGCAASGSIDEAFSLRDVMLSAG--LTPNIITYNSLIYGLCKSGKLSRAVNLFNKL---- 796
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
K + PN TY L++ + K TEA +
Sbjct: 797 -QSKGISPNGITYNTLIDEYCKEGKTTEAFK 826
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 71/350 (20%), Positives = 136/350 (38%), Gaps = 27/350 (7%)
Query: 72 FMEELMQHARNRDA--PRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
F +M A RD + + + +M GL ++H ++ Y G E A L+
Sbjct: 219 FTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILES 278
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI---RQAWLILVEELVRN 186
G+ P T L + + G + ++ M++ DI A+ +++ +
Sbjct: 279 LQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETG-DIVVDEVAYGMMINGYCQR 337
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
++DA +V G+ +Y+ MI CK G ++ EME G + +
Sbjct: 338 GRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSY 397
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
N L+ G AF M + + T TYN +++ + + D D L
Sbjct: 398 NTLIDGYCREGSMRKAFEMCRMMV--RNGLAATTLTYNTLLKGFCSLHAID---DALRLW 452
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL 366
+M++ + + PN + + L++ K +A+ ++ V+
Sbjct: 453 FLMLK--RGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVI--------TF 502
Query: 367 SLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
+ + LC+ GR+ E E L+ M + PP ++ YRTL + +
Sbjct: 503 NTVINGLCKIGRMAEAEELLDRMKE--LRCPPDSL----TYRTLFDGYCK 546
>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
Length = 506
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 127/310 (40%), Gaps = 25/310 (8%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV +++ G+ RS +G +A + A+ R AG + T+ L
Sbjct: 39 DVFDELLRRGIGAPIRSLNG-ALADVARDNPAAAVSRFNRMARAGASMVTPTVHTYGILI 97
Query: 150 G---SKGLATKGLEILAAMEKINYDIRQAWLI-LVEELVRNKYLEDANKVFLRGAKGGLR 205
G S G G L + K + + L++ L +K +DA + LRG L
Sbjct: 98 GCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTE-LS 156
Query: 206 ATDEIYD--LMIAEDCKAGDHSNALEIAYEM--EAAGRMATTFHFNHLLSCQATCGIPEV 261
++ +++ C ALE+ + M + G + ++ ++ G P+
Sbjct: 157 CVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDK 216
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A+AT+ M + + P+ Y+ +I A + ++ D+ +V + MV++ + PN
Sbjct: 217 AYATYREML--DRRILPNVVIYSSIIAALCKGQAMDKAMEVHD---RMVKNG--VTPNCF 269
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381
TY LV F +TEAI+ + + V+ S ++ LC+ GR E
Sbjct: 270 TYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVV--------TYSSFMDYLCKNGRCTE 321
Query: 382 LLEALEAMAK 391
+ ++M K
Sbjct: 322 ARKIFDSMVK 331
>gi|206575140|gb|ACI14440.1| Os01g67210-like protein [Secale cereale]
Length = 358
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 19/245 (7%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V MI++G P + G +V + G HS+ L+A + + +L L G
Sbjct: 74 VCEKMISSGCFPDGKK-TGEIVTFFCQGKKVTEAHSVY--LAAKEKKVXIPTSSLDFLVG 130
Query: 151 SKGLATKGLEILAAMEKIN----YDIRQA---WLILVEELVRNKYLEDANKVFLRGAKGG 203
+ LA I A+E ++ ++ A + ++ L R K ++DA K+ +R G
Sbjct: 131 A--LAXNDETIXTALELLDEYKGXSLKHAGKSFAAVIHSLCRMKNVKDAKKLLMRMVDLG 188
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
+++ +I K G+ +A + ME+ G + ++ ++S A G+ + A
Sbjct: 189 PAPGSAVFNFVITGXSKEGEMEDAKGLIRVMESRGLRXDVYTYSEIMSXYAKGGMIDEAH 248
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+ E + + KP TY+ +I+ Y + E +++ E L M ED LQPN Y
Sbjct: 249 SLLR--EAKKIHPKPSRVTYHILIRGYCKMEEFEK---ALECLKEMKEDG--LQPNXDEY 301
Query: 324 ALLVE 328
L++
Sbjct: 302 NKLIQ 306
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 121/301 (40%), Gaps = 11/301 (3%)
Query: 40 KKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHARNRDAPRVNDVIYDMIAAG 99
KK H D LL +V A + F + + +N + V +M G
Sbjct: 238 KKGGAGNMYHVDMLLK---EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQG 294
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
++ +++ L+ G E + ++ G+ P T + + F KG+
Sbjct: 295 IAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADAN 354
Query: 160 EILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+ + M + N + + IL++ R +EDA V AK G+ Y+ +I
Sbjct: 355 DWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGF 414
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
++GD +A + EM+ G A +N L+ A C EV A E E ++P
Sbjct: 415 SRSGDWRSASGLLDEMKEKGIEADVVTYNVLIG--ALCCKGEVRKAVKLLDEMSEVGLEP 472
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
+ TYN +IQ + ++ E+ M + KR NV TY + ++ F + + E
Sbjct: 473 NHLTYNTIIQGFC---DKGNIKSAYEIRTRMEKCRKR--ANVVTYNVFIKYFCQIGKMDE 527
Query: 339 A 339
A
Sbjct: 528 A 528
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 133/317 (41%), Gaps = 39/317 (12%)
Query: 113 AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME----KI 168
Y NG E A+ LS G H + I L F G K E++ +E ++
Sbjct: 223 VYCNNGKSERALSVFNEILSRGWLDEHISTI-LVVSFCKWGQVDKAFELIEMLEERHIRL 281
Query: 169 NYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228
NY + + +L+ V+ ++ A ++F + + G+ +YD++I CK D AL
Sbjct: 282 NY---KTFCVLIHGFVKESRIDKAFQLFEKMRRMGMNPDIALYDVLIGGLCKHKDLEMAL 338
Query: 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA-FATFENMEYGEDYMKPDTETYNCVI 287
+ E++ +G LL C E + + + G+ K Y ++
Sbjct: 339 SLYLEIKRSGIPPDRGILGKLL-----CSFSEESELSRITKVIIGDIDTKSVMLLYKSLL 393
Query: 288 QAYTRA----ESYDRVQDV---------AELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
+ + R E+Y+ +Q++ +E++ ++ + +K + P+ + +++++C K
Sbjct: 394 EGFIRNDLVHEAYNFIQNLMGNHESDGMSEIVKLLKDQNKAILPDSDSLSIVIDCLVKAN 453
Query: 335 AVTEAIRHFR-ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393
V A+ +QN + +++N + +C+EGR E L+ L M +
Sbjct: 454 KVNMAVTLLHDIVQNGLIPSLMMYNN---------IIEGMCKEGRSEESLKLLAEM--KD 502
Query: 394 QPVPPRAMILSRKYRTL 410
V P L+ Y L
Sbjct: 503 AGVEPSQYTLNCIYGCL 519
>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
C-169]
Length = 1226
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 104/258 (40%), Gaps = 41/258 (15%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV DM G+ P +++ L+ Y G E A+ L+R G+ P+ T L
Sbjct: 192 DVWEDMQRDGIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIAC 251
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+ G L+ L EE+ R A L T
Sbjct: 252 NTSGQWQTALQ------------------LYEEM--------------RAAGHALNTTS- 278
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
Y+ +I+ KAGD L+ +M G + ++ L+S G ++A F+
Sbjct: 279 -YNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFD-- 335
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
E +D +P+ T+N +I A + +++ +++ EL+ + P+V TY L+
Sbjct: 336 ECLKDNCRPNVITFNSLITACAQGAQWEKARELFELM-----QQQGCTPDVVTYTALISA 390
Query: 330 FTKYCAVTEAIRHFRALQ 347
+ + A++ F+A+Q
Sbjct: 391 YERGGKWQLALQAFQAMQ 408
>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
Length = 1205
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 122/309 (39%), Gaps = 22/309 (7%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVR---PLHETLIALAR 147
V+ ++ G P + + L+ L G + A+H + L+ G + + TLI
Sbjct: 116 VLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVC 175
Query: 148 LFGSKGLATKGLE-ILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
G A K L+ I + K N + + +++ L + + + +A +F G+ A
Sbjct: 176 KIGDTRAAIKLLQKIDGRLTKPNVVM---YSTIIDALCKYQLVSEAYGLFSEMTVKGISA 232
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y +I C G A+ + EM + +N L+ G + A +
Sbjct: 233 DVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVL 292
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
M + +KPD TY+ ++ Y + Q V + +M + P+V TY +L
Sbjct: 293 AVML--KACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM-----GVTPDVHTYTIL 345
Query: 327 VECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEAL 386
+ F K V EA+ F+ + ++ S + LC+ GRI + + +
Sbjct: 346 INGFCKNKMVDEALNLFKEMHQKNMVPGIV--------TYSSLIDGLCKSGRIPYVWDLI 397
Query: 387 EAMAKDNQP 395
+ M QP
Sbjct: 398 DEMHDRGQP 406
Score = 43.9 bits (102), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 16/204 (7%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVR----NKY 188
G++P TL L F G T ILA + K Y + L+ L NK
Sbjct: 956 GIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKA 1015
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
L +K+ +G + Y +I CK GD A+++ +++ +N
Sbjct: 1016 LHFHDKLLAQG----FQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNT 1071
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
++ + A+ F E + D TYN +I + ++++ LL
Sbjct: 1072 IIDALCKHQLVSKAYGLF--FEMNVKGISADVVTYNTLIYGFCIV---GKLKEAIGLLNK 1126
Query: 309 MVEDHKRLQPNVKTYALLVECFTK 332
MV K + PNV+TY +LV+ K
Sbjct: 1127 MVL--KTINPNVRTYNILVDALCK 1148
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 8/207 (3%)
Query: 134 GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDA 192
G++P TL L F G T G +LA + K Y L L++ L ++ A
Sbjct: 89 GIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKA 148
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
+ G + Y +I CK GD A+++ +++ ++ ++
Sbjct: 149 LHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDA 208
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
+ A+ F M + D TY+ +I + ++++ LL MV
Sbjct: 209 LCKYQLVSEAYGLFSEMTV--KGISADVVTYSTLIYGFCIE---GKLKEAIGLLNEMVL- 262
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEA 339
K + PNV TY +LV+ K V EA
Sbjct: 263 -KTINPNVYTYNILVDALCKEGKVKEA 288
>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
Length = 348
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 102/250 (40%), Gaps = 20/250 (8%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ +M++ G+SP ++ L+ + + G + A+ + + ++P T L F
Sbjct: 98 DLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGF 157
Query: 150 GSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+G + A M K + Y+ LV+E+ A +F A+G
Sbjct: 158 CKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEV------NTAKSIFNTMAQG 211
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ Y+++I CK A+ + EM + +N L+ + G A
Sbjct: 212 GVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYA 271
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ M + + P+ TYN +I A + D+ A L +D + +QP++ T
Sbjct: 272 LQLVDQMH--DRGVPPNILTYNSIIDALFKTHQVDK----AIALITKFKD-QGIQPSMYT 324
Query: 323 YALLVECFTK 332
Y +L++ K
Sbjct: 325 YTILIDGLCK 334
>gi|218191262|gb|EEC73689.1| hypothetical protein OsI_08260 [Oryza sativa Indica Group]
Length = 595
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
FL+ GL IY++ + CK G+ + A+++ EM+ G H+ L++
Sbjct: 93 FLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCL 152
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G + A FE M ++PD TYN + + ++ V +V +LL M + +
Sbjct: 153 KGEMQNAQQVFEEMLKAN--IEPDIVTYNILASGFCKS---GLVMEVFDLLDRMAD--QG 205
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
L+PN TY + + F + ++EA F ++
Sbjct: 206 LEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVE 237
>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
Length = 794
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 104/251 (41%), Gaps = 32/251 (12%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALA 146
D + D AAGL +F LV A++ G H A+ + R RP ++ T++
Sbjct: 123 DALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTIL--- 179
Query: 147 RLFGSKGLATKGLEILAAMEKINYDI-------RQAWLILVEELVRNKYLEDANKVFLRG 199
K L G+ IL A+ N + R + +L++ L + DA K+F
Sbjct: 180 -----KALVDSGV-ILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEM 233
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
G+ +IY ++++ C AG A+++ M+ G + +N LS G
Sbjct: 234 LDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRV 293
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG---MMVEDHKRL 316
AF ++ G + Y+C+I +A +D E G M+E + +
Sbjct: 294 NEAFQRLVMLQDGG--FALGLKGYSCLIDGLFQARRFD------EGFGYYKTMLE--RNI 343
Query: 317 QPNVKTYALLV 327
P+V Y +++
Sbjct: 344 SPDVVLYTIMI 354
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 97/238 (40%), Gaps = 27/238 (11%)
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
GL A+ + ++A AG H++A++ M+ T F +N +L G+ +
Sbjct: 131 AGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILL 190
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A A + M P+ TYN ++ + D ++ M++ + + PNVK
Sbjct: 191 ALALYNRMVAAG--CAPNRATYNVLMDGLCKQ---GMAGDALKMFDEMLD--RGIMPNVK 243
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL--YLRALCREGRI 379
Y +L+ + EA++ +++ ++G D ++ +L LC+ GR+
Sbjct: 244 IYTVLLSSLCNAGKIDEAVQLLGSMK----------DKGCLPDEVTYNAFLSGLCKVGRV 293
Query: 380 IELLEALEAMAKDNQPVPPRAMILSRK-YRTLVSSWIEPLQEEAELGYEIDYIARYIS 436
E + L M +D L K Y L+ + + + GY + R IS
Sbjct: 294 NEAFQRL-VMLQDG------GFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNIS 344
>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 43/243 (17%)
Query: 121 EGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINY---------- 170
E A K+ +G + T +L LF +KGL K E+ +ME
Sbjct: 179 EVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELM 238
Query: 171 -----------------------DIRQAWLI---LVEELVRNKYLEDANKVFLRGAKGGL 204
++R ++L+ LV+ + + L+ + KV++ GL
Sbjct: 239 IPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGL 298
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
R + +Y +I KAG AL I EM+ AG + ++ A G E A +
Sbjct: 299 RPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMS 358
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
F +ME P TY+C+++ ++ + D + + + L+P + TY
Sbjct: 359 VFSDMEKAG--FLPTPSTYSCLLEMHSASGQVDSAMKLYNSM-----TNAGLRPGLSTYT 411
Query: 325 LLV 327
L+
Sbjct: 412 ALL 414
Score = 46.2 bits (108), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 8/210 (3%)
Query: 82 NRDAP-RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
N+ P + +V M AAG ++ ++ + +G + A + +RP
Sbjct: 209 NKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFL 268
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQA---WLILVEELVRNKYLEDANKVFL 197
+L G G +++ ME + +R + ++ L+E V+ LE A +++
Sbjct: 269 VFASLVDSMGKAGRLDTSMKVY--MEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWD 326
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
K G R +Y +++ K+G A+ + +ME AG + T ++ LL + G
Sbjct: 327 EMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASG 386
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVI 287
+ A + +M ++P TY ++
Sbjct: 387 QVDSAMKLYNSMTNAG--LRPGLSTYTALL 414
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 78 QHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP 137
HA++ V DM AG P P ++ L+ ++ +G + AM +AG+RP
Sbjct: 346 SHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRP 405
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDI 172
T AL L +K L ++L M+ + + +
Sbjct: 406 GLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSV 440
>gi|242061532|ref|XP_002452055.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
gi|241931886|gb|EES05031.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
Length = 810
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 121/288 (42%), Gaps = 33/288 (11%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSL----KRELSAGV 135
N++ +++ +MI +G P +F ++ + NG + AM L K + GV
Sbjct: 214 CSNKEWDDAEELLSEMIRSGCPPNDLTFGMIIHSLCQNGLADRAMGVLDQMSKCRCTRGV 273
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195
+E + LA L G + L + M DI ++ +++ L R+ EDA +
Sbjct: 274 IVYNEIISCLAEL----GRVEEALHLFDQM-PCKPDIF-SYNTVMKGLCRDGRWEDAGTL 327
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+ + ++ +I+ C G A+E+ +M G F ++ L++ +
Sbjct: 328 IAGMVRKDCPPDEVTFNTVISYLCHRGLVDCAMEVVEQMPKYGCKPDNFTYSALVNALSE 387
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G + A + + KP+T Y V++ RA+ +D DV +L+ M+ +
Sbjct: 388 RGCVDDALELLRTIPW-----KPNTVCYRSVLKGLCRADRWD---DVGKLVAEMIRNQLN 439
Query: 316 LQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG 363
L + T+ L+++C + + L +Y G +VL FG
Sbjct: 440 L--DEVTFGLIIDCLCQ-----------KGLVDY--GAEVLREMTKFG 472
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
K GL+ T ++ +I CK G A+E+ +M A G + +++ C I E
Sbjct: 185 KLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIIN--GLCKIGE 242
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
A + GE +PD TY+ +I + + RV + ++ M K + PN+
Sbjct: 243 TVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDR---RVNEALDIFSYM--KAKGISPNI 297
Query: 321 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 380
TY L++ + EA A+ N ++ N F SL + C+EG +
Sbjct: 298 FTYNSLIQGLCNFSRWREA----SAMLNEMMSLNIMPNIVTF----SLLINIFCKEGNVF 349
Query: 381 ELLEALEAM 389
E L+ M
Sbjct: 350 EARGVLKTM 358
Score = 46.6 bits (109), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 29/318 (9%)
Query: 87 RVN---DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
RVN D+ M A G+SP +++ L+ A L +S + P T
Sbjct: 277 RVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFS 336
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE----DANKVFLRG 199
L +F +G + +L M ++ + ++ L+ L+ +A K+F
Sbjct: 337 LLINIFCKEGNVFEARGVLKTMTEMGV---EPNVVTYSSLMNGYSLQAEVVEARKLFDVM 393
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
G + Y+++I CKA A ++ EM G +N L+ G
Sbjct: 394 ITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRL 453
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
A F+NM + PD TY+ ++ + + + Y + L M + L+PN
Sbjct: 454 REAHDLFKNMLTNGNL--PDLCTYSILLDGFCK-QGY--LAKAFRLFRAMQSTY--LKPN 506
Query: 320 VKTYALLVECFTKYCAVTEAIRHFRAL--QNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
+ Y +L++ K + EA + F L Q + ++ + + LC+EG
Sbjct: 507 MVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIY----------TTIINGLCKEG 556
Query: 378 RIIELLEALEAMAKDNQP 395
+ E LEA M +D P
Sbjct: 557 LLDEALEAFRNMEEDGCP 574
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+MI GL+P S++ L+ G A K L+ G P T L F +G
Sbjct: 427 EMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQG 486
Query: 154 LATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
K + AM+ + IL++ + +++ L++A K+F GL+ +IY
Sbjct: 487 YLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYT 546
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+I CK G ALE ME G F +N ++
Sbjct: 547 TIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVII 584
>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
Length = 577
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 7/169 (4%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
+++ L + + A ++F GL + +Y +I CKA ALE+ +M+ A
Sbjct: 413 MIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 472
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
T +N L+ G E A A F+ M E KPD TYN +I + +A + D
Sbjct: 473 CTPDTITYNILIDGLCKSGDVEAARAFFDEML--EAGCKPDVYTYNILISGFCKAGNTDA 530
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
V + + R NV TY L+ K +T+A +F+ ++
Sbjct: 531 ACGVFDDM-----SSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMK 574
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 91/223 (40%), Gaps = 23/223 (10%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
+++ L + + A ++F GL + +Y +I CKA ALE+ +M+ A
Sbjct: 132 MIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 191
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
T +N L+ G E A A F+ M E KPD TYN +I + +A + D
Sbjct: 192 CTPDTITYNVLIDGLCKSGDVEAARAFFDEML--EAGCKPDVYTYNILISGFCKAGNTDA 249
Query: 299 V-QDVAE---LLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354
+A+ + G ++ H TY +V+ K + EA+ + G T
Sbjct: 250 ASHSLAQETTINGCTIDIH--------TYTAIVDWLAKNKKIEEAVALMEKITA-NGCTP 300
Query: 355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
+ L LC+ GR+ E ++ L + DN P
Sbjct: 301 TIATYNAL-------LNGLCKMGRLEEAIDLLRKIV-DNGCTP 335
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 73/355 (20%), Positives = 146/355 (41%), Gaps = 35/355 (9%)
Query: 71 IFMEELMQHARNRDAP--RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
+FM +M +A +D + M G+ P ++H L+ Y GD E A LK
Sbjct: 192 VFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLK 251
Query: 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI--RQAWLILVEELVRN 186
GV T L + + + + ++L M++ + +A+ +L++ R
Sbjct: 252 FMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRT 311
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
++DA ++ + GL+ I + +I CK G+ A + M ++ +
Sbjct: 312 GKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSY 371
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
N LL G AF + M ++ ++P TYN +++ R ++D D ++
Sbjct: 372 NTLLDGYCREGHTSEAFNLCDKML--QEGIEPTVLTYNTLLKGLCRVGAFD---DALQIW 426
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG--- 363
+M++ + + P+ Y+ L++ K ++N+EG + + + G
Sbjct: 427 HLMMK--RGVAPDEVGYSTLLDGLFK-------------MENFEGASTLWKDILARGFTK 471
Query: 364 --DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
+ + LC+ G+++E E + M KD P YRTL+ + +
Sbjct: 472 SRITFNTMISGLCKMGKMVEAEEIFDKM-KDLGCSPD-----GITYRTLIDGYCK 520
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 107/269 (39%), Gaps = 43/269 (15%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
++R V D++ +M GL+P ++ L+ + G + A S G L
Sbjct: 555 KSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENG---LSA 611
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG- 199
+I + + GL L +++ N +L++++V + + D ++ FL+
Sbjct: 612 NIIICSTM-------VSGLYRLGRIDEAN--------LLMQKMVDHGFFPD-HECFLKSD 655
Query: 200 ----------------AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATT 243
K L + +Y++ IA CK G +A + G +
Sbjct: 656 IRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDN 715
Query: 244 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303
F + L+ + G + AF + M + P+ TYN +I ++E+ DR Q +
Sbjct: 716 FTYCTLIHGYSAAGNVDEAFRLRDEML--RRGLVPNIVTYNALINGLCKSENVDRAQRLF 773
Query: 304 ELLGMMVEDHKRLQPNVKTYALLVECFTK 332
L K L PNV TY L++ + K
Sbjct: 774 HKL-----HQKGLFPNVVTYNTLIDGYCK 797
Score = 39.3 bits (90), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 9/199 (4%)
Query: 145 LARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+ +++ KGL L + M K +R +L LV+N A+ V+ + +
Sbjct: 128 ILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLL-NNLVKNGETHTAHYVYQQMIRV 186
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ + +M+ CK G A +ME G ++ L++ + G E A
Sbjct: 187 GIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAA 246
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ M E + + TY +I+ Y + D + V L GM ++ L P+ +
Sbjct: 247 KGVLKFMS--EKGVSRNVVTYTLLIKGYCKQCKMDEAEKV--LRGM--QEEAALVPDERA 300
Query: 323 YALLVECFTKYCAVTEAIR 341
Y +L++ + + + +A+R
Sbjct: 301 YGVLIDGYCRTGKIDDAVR 319
>gi|77552391|gb|ABA95188.1| salt-inducible protein, putative [Oryza sativa Japonica Group]
Length = 938
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+A FL+ GL IY++ + CK G+ + A+++ EM+ G H+ L+
Sbjct: 500 EAIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLI 559
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
S G + A FE M ++PD TYN + + ++ V +V +LL M
Sbjct: 560 SGYCLKGEMQNAQQVFEEMLKAN--IEPDIVTYNILASGFCKS---GLVMEVFDLLDRMA 614
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+ + L+PN TY + + F + ++EA
Sbjct: 615 D--QGLEPNSLTYGIAIVGFCRGGNLSEA 641
Score = 39.3 bits (90), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 101/230 (43%), Gaps = 23/230 (10%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
A+ ++++ L + L++A K+ A+ G Y +I CK G+ NA++ YE
Sbjct: 414 AYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLINAVD-HYEA 472
Query: 235 EAAGRMATTFHF-NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
+ + T H ++LL C G+ A A F +++ + + D YN + Y +
Sbjct: 473 MVSHGIETNCHIVSYLLQCFRKLGMTSEAIAYF--LKFKDSGLHLDKVIYNIAMDTYCKN 530
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
+ + +LL M + L P+ Y L+ + YC E +QN +
Sbjct: 531 ---GNMNEAVKLLNEM--KYGGLTPDKIHYTCLI---SGYCLKGE-------MQNAQQVF 575
Query: 354 KVLHNEGNFGDPLSLYLRA--LCREGRIIELLEALEAMAKDNQPVPPRAM 401
+ + D ++ + A C+ G ++E+ + L+ MA +Q + P ++
Sbjct: 576 EEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMA--DQGLEPNSL 623
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 5/201 (2%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+MIA G+ P +F LV A + + AM+ L + GV+P T A+ +
Sbjct: 172 EMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVN 231
Query: 154 LATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
K L I M + + W I++ L + K +++A +F + Y
Sbjct: 232 QVNKALNIFNVMVQEGVE-PNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTY 290
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+++I CK G S +LE+ EM + G+ +N LL A C + A E
Sbjct: 291 NILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLL--HALCKNHHLDQAITLVKEI 348
Query: 272 GEDYMKPDTETYNCVIQAYTR 292
+ ++P+ TY +I +
Sbjct: 349 KDQGIQPNVCTYTTLIDGLCK 369
>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++I+ +AG A++I E+E + T +N L++C G + A F+ M
Sbjct: 491 YNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEM- 549
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E + PD TY+ +I+ + + D+V+ L M+ + PN+ TY +L++C
Sbjct: 550 -CEKGLNPDVVTYSTLIECFGKT---DKVEMACRLFDEMLAEG--CYPNIVTYNILLDCL 603
Query: 331 TKYCAVTEAIRHFRALQ 347
+ EA+ + L+
Sbjct: 604 ERSGRTAEAVDLYAKLK 620
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 15/175 (8%)
Query: 173 RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
R A + ++E L +A + + + G+ +Y+ + + K S ++
Sbjct: 418 RDACVSMLECLCSAGKTTEAIDLLGKIHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYE 477
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+M+ G + TF +N L+S G + A FE +E DY KPDT +YN +I +
Sbjct: 478 KMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELE-DSDY-KPDTCSYNSLINCLGK 535
Query: 293 A----ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
E++ + +++ E K L P+V TY+ L+ECF K V A R F
Sbjct: 536 NGHLDEAHMKFKEMCE---------KGLNPDVVTYSTLIECFGKTDKVEMACRLF 581
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 21/232 (9%)
Query: 157 KGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
KG + M+K + DI A+ +L++ LV++ ++ A KVF + + Y +M
Sbjct: 229 KGFAVYLEMKKKGHMLDIF-AFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEYTYTIM 287
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I K G +LE+ EM G +N ++ A + + A F M E
Sbjct: 288 IRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNTMIQALANARMVDKAILLFLKMV--EK 345
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
+P TY+ ++ ++ +V E+ K + ++ YA LV K
Sbjct: 346 ECRPSEFTYSVILHLLATERKLHKLDEVVEV------SKKYMSRSI--YAYLVRTLKKLG 397
Query: 335 AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEAL 386
+EA R F + N H G+ +S+ L LC G+ E ++ L
Sbjct: 398 HASEAHRLFCNMWN-------CHERGDRDACVSM-LECLCSAGKTTEAIDLL 441
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 7/154 (4%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
ED K K GLR T Y ++ ++ + + EM+ G M F FN L
Sbjct: 193 EDLQKCIGLIKKWGLRMTGYTYKCLVQAYLRSRNTEKGFAVYLEMKKKGHMLDIFAFNML 252
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
L + A+ FE+M+ + +PD TY +I+ + D + EL M
Sbjct: 253 LDALVKDSEVDHAYKVFEDMK--RKHCEPDEYTYTIMIRMTGKIGKPD---ESLELFEEM 307
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+ +K PNV Y +++ V +AI F
Sbjct: 308 L--NKGYSPNVIAYNTMIQALANARMVDKAILLF 339
>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 10/222 (4%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L R DA R+ + DM+ + P F L+ + G+ A + K + V
Sbjct: 229 LSNSGRWTDAARL---LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSV 285
Query: 136 RP---LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDA 192
P + +LI + G G A +++ + K + + L+ ++K +ED
Sbjct: 286 VPNVFTYNSLINGFCIHGCLGDAKYMFDLMVS--KGCFPDVVTYNTLITGFCKSKRVEDG 343
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
K+F GL Y+ +I C+AG + A ++ M G +N LL C
Sbjct: 344 MKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDC 403
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
G E A E+++ E M D TYN +IQ R +
Sbjct: 404 LCNNGKIEKALVMVEDLQKSE--MDVDIITYNIIIQGLCRTD 443
>gi|297835316|ref|XP_002885540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331380|gb|EFH61799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 841
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 106/269 (39%), Gaps = 8/269 (2%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H +N D R +M AGL P P S+ L+ A+++ + A + V
Sbjct: 376 HTKNNDIERAGTYFKEMKGAGLKPDPVSYRTLLYAFSIRHMVKEAEELIAEMDDNDVEID 435
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
T AL R++ + K + + ++ YL +A +VF+
Sbjct: 436 EYTQSALTRMYIEAEMLEKSWSWFKRFHVAGNMSSEGYSANIDAYGERGYLSEAERVFIC 495
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+ R E Y++MI + A E+ M + G +N L+ A+ +
Sbjct: 496 CQEVNKRTVLE-YNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADM 554
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
P+ A E M E D Y VI ++ + + ++V + MVE + ++P
Sbjct: 555 PDKAKCYLEKMR--ETGYVSDCIPYCAVISSFVKLGQLNMAEEVYK---EMVEYN--IEP 607
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+V Y +L+ F V +A+ + A++
Sbjct: 608 DVVVYGVLINAFADTGNVQQAMSYVEAMK 636
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 118/292 (40%), Gaps = 17/292 (5%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
++ ++ AY ++ E A + +S GV P T L ++ S + K L M
Sbjct: 507 YNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPDKAKCYLEKMR 566
Query: 167 KINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
+ Y + ++ V+ L A +V+ + + +Y ++I G+
Sbjct: 567 ETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQ 626
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYN 284
A+ M+ AG + +N L+ G + A A + + + PD T N
Sbjct: 627 QAMSYVEAMKEAGIPENSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNETQYPDVYTSN 686
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 344
C+I Y++ + + + E + +R + N T+A+++ + K EA + +
Sbjct: 687 CMINLYSQRSMVRKAEAIFESM------KQRREANEFTFAMMLCMYKKNGRFEEATQIAK 740
Query: 345 ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN-QP 395
++ ++L + ++ L LY AL +GR E +E + M QP
Sbjct: 741 QMRE----MRILTDPLSYNSVLGLY--AL--DGRFKEAVETFKEMVSSGIQP 784
>gi|226533082|ref|NP_001141414.1| uncharacterized protein LOC100273524 [Zea mays]
gi|194704512|gb|ACF86340.1| unknown [Zea mays]
Length = 637
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 16/222 (7%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ IL+ L + E + G+R ++ +I +A A+ ++M+
Sbjct: 105 YTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALINAFVEAKRMGEAINTFWKMK 164
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+G TT FN L+ G PE + F+ M E ++P+ TYN +++A+
Sbjct: 165 HSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGV-EGSVRPNLTTYNILVKAWC---D 220
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
+ +++ ++G M +P++ TY + + A +Q T+V
Sbjct: 221 HRNLEEAWGVVGKM--QAGGFEPDIVTYNTIASAYANNDETWRAEELIVEIQ-----TRV 273
Query: 356 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
+E +G + + CREGR+ E L ++ M KD VP
Sbjct: 274 RTSERTWG----IIIGGYCREGRLEEALRCVQQM-KDAGSVP 310
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 110/255 (43%), Gaps = 12/255 (4%)
Query: 86 PRVNDVIYDMIA--AGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
P + ++DM+ + P +++ LV A+ + + E A + + + G P T
Sbjct: 188 PEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYN 247
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
+A + + + E++ ++ + W I++ R LE+A + + G
Sbjct: 248 TIASAYANNDETWRAEELIVEIQTRVRTSERTWGIIIGGYCREGRLEEALRCVQQMKDAG 307
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
I++ ++ A D + +I ME G ++H L+ ++ G
Sbjct: 308 SVPNVVIFNTLLKGFLDANDMAAVNKILGLMEKFGIKPDIVTYSHQLNTFSSLGHMAKCM 367
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
F+ M E ++PD + Y+ + + + RA+ ++ +D+ LL M H L PNV T+
Sbjct: 368 HVFDKMI--EAGIEPDPQVYSILAKGFVRAQQPEKAEDL--LLQM---SHLGLCPNVVTF 420
Query: 324 ALLVECFTKYCAVTE 338
++ + +C+V +
Sbjct: 421 TTVI---SGWCSVAD 432
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 73/355 (20%), Positives = 146/355 (41%), Gaps = 35/355 (9%)
Query: 71 IFMEELMQHARNRDAP--RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
+FM +M +A +D + M G+ P ++H L+ Y GD E A LK
Sbjct: 226 VFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLK 285
Query: 129 RELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI--RQAWLILVEELVRN 186
GV T L + + + + ++L M++ + +A+ +L++ R
Sbjct: 286 FMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRT 345
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
++DA ++ + GL+ I + +I CK G+ A + M ++ +
Sbjct: 346 GKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSY 405
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
N LL G AF + M ++ ++P TYN +++ R ++D D ++
Sbjct: 406 NTLLDGYCREGHTSEAFNLCDKML--QEGIEPTVLTYNTLLKGLCRVGAFD---DALQIW 460
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG--- 363
+M++ + + P+ Y+ L++ K ++N+EG + + + G
Sbjct: 461 HLMMK--RGVAPDEVGYSTLLDGLFK-------------MENFEGASTLWKDILARGFTK 505
Query: 364 --DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
+ + LC+ G+++E E + M KD P YRTL+ + +
Sbjct: 506 SRITFNTMISGLCKMGKMVEAEEIFDKM-KDLGCSPD-----GITYRTLIDGYCK 554
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 107/269 (39%), Gaps = 43/269 (15%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
++R V D++ +M GL+P ++ L+ + G + A S G L
Sbjct: 589 KSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENG---LSA 645
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG- 199
+I + + GL L +++ N +L++++V + + D ++ FL+
Sbjct: 646 NIIICSTM-------VSGLYRLGRIDEAN--------LLMQKMVDHGFFPD-HECFLKSD 689
Query: 200 ----------------AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATT 243
K L + +Y++ IA CK G +A + G +
Sbjct: 690 IRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDN 749
Query: 244 FHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA 303
F + L+ + G + AF + M + P+ TYN +I ++E+ DR Q +
Sbjct: 750 FTYCTLIHGYSAAGNVDEAFRLRDEML--RRGLVPNIVTYNALINGLCKSENVDRAQRLF 807
Query: 304 ELLGMMVEDHKRLQPNVKTYALLVECFTK 332
L K L PNV TY L++ + K
Sbjct: 808 HKL-----HQKGLFPNVVTYNTLIDGYCK 831
Score = 39.7 bits (91), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 9/199 (4%)
Query: 145 LARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+ +++ KGL L + M K +R +L LV+N A+ V+ + +
Sbjct: 162 ILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLL-NNLVKNGETHTAHYVYQQMIRV 220
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ + +M+ CK G A +ME G ++ L++ + G E A
Sbjct: 221 GIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAA 280
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ M E + + TY +I+ Y + D + V L GM ++ L P+ +
Sbjct: 281 KGVLKFMS--EKGVSRNVVTYTLLIKGYCKQCKMDEAEKV--LRGM--QEEAALVPDERA 334
Query: 323 YALLVECFTKYCAVTEAIR 341
Y +L++ + + + +A+R
Sbjct: 335 YGVLIDGYCRTGKIDDAVR 353
>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Brachypodium distachyon]
Length = 787
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 109/298 (36%), Gaps = 31/298 (10%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D ++A L P +F+ LV + G A+ +L G+ P T L
Sbjct: 190 DAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAH 249
Query: 150 GSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
KG+ + +LA M+K R + LV R +++ A KV G
Sbjct: 250 CRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDL 309
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGR-MATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+++ A C+AG A + EME G + +N L C A E
Sbjct: 310 WTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLE 369
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M E +K T+N VI+ + ++ L M +D L P+V TY L+
Sbjct: 370 EMR--EKGVKATLVTHNIVIKGLCKD---GELEGALGCLNKMADD--GLAPDVITYNTLI 422
Query: 328 ECFTK-------YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
K Y + E +R L + T VL+N LC+E R
Sbjct: 423 HAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNT-VLYN--------------LCKEKR 465
Score = 40.0 bits (92), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 15/202 (7%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
I+++ L ++ LE A + A GL Y+ +I CKAG+ + A + EM
Sbjct: 385 IVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRR 444
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G TF N +L E A ++ + PD +Y V+ AY + Y+
Sbjct: 445 GLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPP--QRGFMPDEVSYGTVMAAYFK--EYN 500
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+ L M+E K+L P++ TY L++ ++ + EAI L E G ++
Sbjct: 501 S-EPALRLWDEMIE--KKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELM--EKG--LVP 553
Query: 358 NEGNFGDPLSLYLRALCREGRI 379
++ + ++ + A C+EG +
Sbjct: 554 DDTTY----NIIIHAYCKEGDL 571
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 91/214 (42%), Gaps = 15/214 (7%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
IL+ ++++ V + K GL+ T + +I CKAG+ + ALE+ +M A
Sbjct: 131 ILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVAR 190
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G + + +++ C + E A A + GE +PD TY+ +I + + +
Sbjct: 191 GCQPDVYTYTTIIN--GLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVN 248
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
D+ + K + P V +Y L++ + EA A+ N ++
Sbjct: 249 EALDIFSYM-----KAKGISPTVVSYTSLIQGLCSFSRWKEA----SAMLNEMTSLNIMP 299
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391
+ F SL + C+EG ++E L+ M +
Sbjct: 300 DIVTF----SLLIDIFCKEGNVLEAQGVLKTMTE 329
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 1/158 (0%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+MI GL+P S+ L+ A+ G A K + G P T L F +G
Sbjct: 396 EMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQG 455
Query: 154 LATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
K + AM+ + IL++ + ++ L A K+F GL+ +IY
Sbjct: 456 YLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYT 515
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+I CK G ALE +ME G F +N ++
Sbjct: 516 TIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVII 553
Score = 39.7 bits (91), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 32/147 (21%)
Query: 276 MKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
+ P+T +Y +I A+ + ++++ EL M + P++ TY++L+E F K
Sbjct: 402 LTPNTVSYTTLIHAFCQL---GKLREARELFKDMHTNGYL--PDLCTYSVLLEGFCKQGY 456
Query: 336 VTEAIRHFRALQ-NYEGGTKVLHN--------EGNFGDPLSLY----------------- 369
+ +A R FRA+Q Y V++ GN L+
Sbjct: 457 LGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTT 516
Query: 370 -LRALCREGRIIELLEALEAMAKDNQP 395
+ LC+EG + E LEA M +D P
Sbjct: 517 IINGLCKEGLLDEALEAFRKMEEDGCP 543
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 105/428 (24%), Positives = 154/428 (35%), Gaps = 62/428 (14%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
I + L R + DA VF K G Y+ +++ C G S+A + M A
Sbjct: 55 IYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKA 114
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G +N LL G + A F+ + PD TYN +I + +A+ D
Sbjct: 115 GYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAV--KRGFVPDVVTYNALINGFCKADKLD 172
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
Q +L MV + L P+V TY LV K V EA ++L
Sbjct: 173 EAQ---RILQRMVSES--LVPDVVTYNSLVNGLCKNGRVDEA--------------RMLI 213
Query: 358 NEGNFGDPLSLY---LRALCREGRIIE----LLEALEAMAKDNQPVPPRAMILSRKYRTL 410
+ F + Y + LCRE R +E LLE + V A+I
Sbjct: 214 VDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQG 273
Query: 411 VSSWIEPLQEEAELGYEIDYIARYISEGGLTGERK-----RWVPRRGKTPLDPDAVGFIY 465
VS ++ GYE + I GL E + K L+PDA+ +
Sbjct: 274 VSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITY-- 331
Query: 466 SNPMETSFKQRCLEDGKKYHRKLLRTLQNEGPAVLGDVSESDYV-------RVEERLKKL 518
T F + G+ L+ +E V VS + + RV+E + L
Sbjct: 332 -----TVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEA-EVL 385
Query: 519 IKGPEQHVLKPKAAS--------------KMVVSELKEELDAQGLPTDGTRNVLYQRVQK 564
+ G E P A S K ++ KE L PT T N+L + K
Sbjct: 386 LSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK 445
Query: 565 ARRINRSR 572
AR+ R +
Sbjct: 446 ARQEGRIK 453
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 77/367 (20%), Positives = 143/367 (38%), Gaps = 55/367 (14%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDH-EGAMHSLKRELSAGVRPLHETLIAL 145
RV++ ++ G SP ++ L+ E A L++ + G +P + AL
Sbjct: 205 RVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNAL 264
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
+ ++ L++ ++ + Y+ + IL++ L++ + +A ++F K GL
Sbjct: 265 IHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGL 324
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEM------------------------------ 234
Y + I CKAG +AL + +M
Sbjct: 325 EPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEV 384
Query: 235 -----EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
EA G FN L+ Q G + A TF+ M + +KP TYN ++
Sbjct: 385 LLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEML--KRGVKPTVVTYNILVDG 442
Query: 290 YTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+A R+++ L M+E + P+V TY+ L++ K + +A R A++
Sbjct: 443 LCKARQEGRIKEAITLFDAMIEKGR--VPDVVTYSALIDGLGKAGKLDDARRLLGAME-- 498
Query: 350 EGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRT 409
+ N + +S LC ++ E LE AM + VP + Y T
Sbjct: 499 --AKGCIPNVYTYNSLIS----GLCGLDKVDEALELFVAMV-EKGCVPD-----TITYGT 546
Query: 410 LVSSWIE 416
++S+ +
Sbjct: 547 IISALCK 553
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
D+ + GLSP +++ LV + GD GA +K G++P T L F
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422
Query: 154 LATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
K +++ +ME++ D+ + +L+ + +A+++F + + IY
Sbjct: 423 NMEKAIQLRLSMEELGLVPDV-HTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIY 481
Query: 212 DLMIAEDCKAGDHSNALEIAYEME 235
+ MI CK G AL++ EME
Sbjct: 482 NTMILGYCKEGSSYRALKLLKEME 505
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
++ IL++ +E + + + + G IY +I CK G+ A ++ +EM
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
G +A + L++ G+ + F +E M+ ED + P+ TYNCV+ +
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQ--EDGVFPNLYTYNCVMNQLCKD- 281
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
R +D ++ M E + + N+ TY L+
Sbjct: 282 --GRTKDAFQVFDEMRE--RGVSCNIVTYNTLI 310
>gi|298710948|emb|CBJ32258.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 358
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
A++G E AA E++ +R ++++ R A KVF R G+ + +Y +
Sbjct: 56 ASRGCESEAARERVELVLR------LKDMGRRFEWRGAVKVFRRARARGMVMDNSVYSCI 109
Query: 215 IAEDCKAGDHSNALEIAYEM--EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
I+ K+G S A+E+ E + AG + + +S A E+A + + M
Sbjct: 110 ISVVAKSGRWSEAVELLQEAREDPAGLAPNKYCYTAAVSACARGRNWELALSLLDEMR-- 167
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
E + PD TY + A R + R LLG M + LQPNV Y V+ K
Sbjct: 168 EAGLSPDHFTYGSAVSAMARTGQWRRALG---LLGRMAGEG--LQPNVVCYGAAVDACAK 222
>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
Length = 853
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 93/233 (39%), Gaps = 38/233 (16%)
Query: 133 AGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLED 191
AG P T L + G +++ M+++ + +V L + L
Sbjct: 424 AGYEPDRVTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAA 483
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A K+F + G Y++MIA KA ++ N +++ +M+ AG ++ ++
Sbjct: 484 AYKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVME 543
Query: 252 CQATCGIPEVAFATFENME---------YG-----------------------EDYMKPD 279
CG + A A F M YG +D ++P+
Sbjct: 544 VLGHCGHLDEAEAVFIEMRRDWAPDEPVYGLLVDLWGKAGNVDKALGWYQAMLQDGLQPN 603
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
T N ++ A+ + +R QD +L M+ + L P+V+TY LL+ C T+
Sbjct: 604 VPTCNSLLSAFLKM---NRFQDAYIVLQNMLA--QGLVPSVQTYTLLLSCCTE 651
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 279
K G + +M AG T F +N ++ C G E A FE M++ + PD
Sbjct: 239 KLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG--LVPD 296
Query: 280 TETYNCVIQAYTRAESY-DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
T TYN +I + + D V E+ M E P+V TY L+ CF K+ +
Sbjct: 297 TVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCE------PDVITYNALINCFCKFGKLPI 350
Query: 339 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 379
+ +R ++ G + N ++ S + A C+EG +
Sbjct: 351 GLEFYREMK----GNGLKPNVVSY----STLVDAFCKEGMM 383
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 7/154 (4%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+D + F G R T Y++MI CK GD A + EM+ G + T +N +
Sbjct: 244 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 303
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G + FE M+ + +PD TYN +I + + + ++ E M
Sbjct: 304 IDGFGKVGRLDDTVCFFEEMK--DMCCEPDVITYNALINCFCK---FGKLPIGLEFYREM 358
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
L+PNV +Y+ LV+ F K + +AI+ +
Sbjct: 359 --KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFY 390
>gi|195613918|gb|ACG28789.1| leaf protein [Zea mays]
Length = 637
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 16/222 (7%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
+ IL+ L + E + G+R ++ +I +A A+ ++M+
Sbjct: 105 YTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALINAFVEAKRMGEAINTFWKMK 164
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+G TT FN L+ G PE + F+ M E ++P+ TYN +++A+
Sbjct: 165 HSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGV-EGSVRPNLTTYNILVKAWC---D 220
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKV 355
+ +++ ++G M +P++ TY + + A +Q T+V
Sbjct: 221 HRNLEEAWGVVGKM--QAGGFEPDIVTYNTIASAYANNDETWRAEELIVEIQ-----TRV 273
Query: 356 LHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
+E +G + + CREGR+ E L ++ M KD VP
Sbjct: 274 RTSERTWG----IIIGGYCREGRLEEALRCVQQM-KDAGSVP 310
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 110/255 (43%), Gaps = 12/255 (4%)
Query: 86 PRVNDVIYDMIA--AGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
P + ++DM+ + P +++ LV A+ + + E A + + + G P T
Sbjct: 188 PEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYN 247
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
+A + + + E++ ++ + W I++ R LE+A + + G
Sbjct: 248 TIASAYANNDETWRAEELIVEIQTRVRTSERTWGIIIGGYCREGRLEEALRCVQQMKDAG 307
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
I++ ++ A D + +I M+ G ++H L+ ++ G
Sbjct: 308 SVPNVVIFNTLLKGFLDANDMAAVNKILGLMKKFGIKPDIVTYSHQLNTFSSLGHMAKCM 367
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
F+ M E ++PD + Y+ + + + RA+ ++ +D+ LL M H L PNV T+
Sbjct: 368 HVFDKMI--EAGIEPDPQVYSILAKGFVRAQQPEKAEDL--LLQM---SHLGLCPNVVTF 420
Query: 324 ALLVECFTKYCAVTE 338
++ + +C+V +
Sbjct: 421 TTVI---SGWCSVAD 432
>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
Length = 448
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 119/311 (38%), Gaps = 56/311 (18%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I ++ L + AR DA + + DMI AG +P +++ L+ + G+ + A+ +
Sbjct: 107 ILVDALCKSARISDASLI---LEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM 163
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE 190
L P + Y+I L++ + + +
Sbjct: 164 LENSCSP----------------------------DVFTYNI------LIDGYCKQERPQ 189
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
D K+ K G Y+ ++ K+G + +A +A M + F FN ++
Sbjct: 190 DGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMI 249
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMV 310
G ++A+ F+ M + PD TYN +I RA +R+ D +LL M
Sbjct: 250 DMFCKVGQLDLAYELFQLMT--DRGCLPDIYTYNIMISGACRA---NRIDDARQLLERMT 304
Query: 311 EDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD--PLSL 368
E P+V TY +V K V EA + +VL N G F D S
Sbjct: 305 E--AGCPPDVVTYNSIVSGLCKASQVDEAYEVY----------EVLRNGGYFLDVVTCST 352
Query: 369 YLRALCREGRI 379
+ LC+ R+
Sbjct: 353 LIDGLCKSRRL 363
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEI-YDLMIAEDCKAGDHSNALEIAYEMEAA 237
L+ VR K ++A +F + GL + D I Y +I CKA D A + EME
Sbjct: 4 LLSAFVRKKKAQEAYDLF-KNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKR 62
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G + +N ++ G + A + +M + + P TY ++ A ++
Sbjct: 63 GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM---QRHCAPSVITYTILVDALCKSA--- 116
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
R+ D + +L M+E PNV TY L+ F K + EA+ F +
Sbjct: 117 RISDASLILEDMIE--AGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM 163
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 79/400 (19%), Positives = 150/400 (37%), Gaps = 44/400 (11%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L R + A D+ + + SP ++ L+ + D + A L G+
Sbjct: 5 LSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGI 64
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV 195
P + + + G L M++ + ILV+ L ++ + DA+ +
Sbjct: 65 VPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLI 124
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
+ G Y+ +I CK G+ A+ + +M F +N L+
Sbjct: 125 LEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCK 184
Query: 256 CGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
P+ + M +YG +P+ TYN ++ + ++ Y ++A++ M+ D K
Sbjct: 185 QERPQDGAKLLQEMVKYG---CEPNFITYNTLMDSLVKSGKYIDAFNLAQM--MLRRDCK 239
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGD--PLSLYLRA 372
P+ T+ L+++ F K + A F +++ + G D ++ +
Sbjct: 240 ---PSHFTFNLMIDMFCKVGQLDLAYELF----------QLMTDRGCLPDIYTYNIMISG 286
Query: 373 LCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQ--EEAEL------ 424
CR RI + + LE M + PP + Y ++VS + Q E E+
Sbjct: 287 ACRANRIDDARQLLERMTE--AGCPPDVV----TYNSIVSGLCKASQVDEAYEVYEVLRN 340
Query: 425 -GYEIDYIARYISEGGLTGERK--------RWVPRRGKTP 455
GY +D + GL R+ R + R G P
Sbjct: 341 GGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAP 380
>gi|255660946|gb|ACU25642.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 484
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 9/175 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
W++L++ + ++++ K+F + + G+ T + YD + + G + A +M
Sbjct: 83 WVLLIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKML 142
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+ G T FN ++ G E A FE+M+ E + PD TYN +I Y R +
Sbjct: 143 SEGNEPTRHTFNIMIWGFFLSGKVETANRFFEDMKSRE--IMPDVVTYNTMIXGYYRVKK 200
Query: 296 YDRVQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+ + E+ G + ++P V TY L++ + V +A+R ++ +
Sbjct: 201 MEEAEKYFVEMKG------RNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGF 249
>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
Length = 649
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/352 (19%), Positives = 132/352 (37%), Gaps = 81/352 (23%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALARLFGSKGLATKG 158
P +F + ++ NG + A+ L + G P ++ TLI F +G +
Sbjct: 223 PNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLI---NGFSEQGHVDQA 279
Query: 159 LEILAAM----EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
L++L M + Y+ L + E ED ++ + G + + ++
Sbjct: 280 LDLLNTMLCKPNTVCYNAALKGLCIAERW------EDIGELMAEMVRKGCSPNEATFSML 333
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I+ C+ +A+E+ +ME G T ++N +++ + G + A +M
Sbjct: 334 ISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM----- 388
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED---------------------- 312
KPD +N V++ + RAE R D +EL+ M D
Sbjct: 389 VCKPDALGFNAVLKGFCRAE---RWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLV 445
Query: 313 -----------HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ------NYEGGTKV 355
R P++ TY+ L+ F++ V AI+ FR++ +Y K
Sbjct: 446 NYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFSYNAVLKG 505
Query: 356 LHNEGNFGDP------------------LSLYLRALCREGRIIELLEALEAM 389
L + D ++ + +LC++G + +E LE M
Sbjct: 506 LCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQM 557
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 12/218 (5%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
+F+ L+ NG A ++ P T +L F +GL +++ +M
Sbjct: 431 TFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSM 490
Query: 166 EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
DI ++ +++ L R EDA ++ + ++++I C+ G
Sbjct: 491 -PCKPDIF-SYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVD 548
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
A+E+ +M G F +N L++ + G + A M KPD +YN
Sbjct: 549 RAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMS-----CKPDAISYNS 603
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
++ RAE R QD EL+ M+ + + PN T+
Sbjct: 604 TLKGLCRAE---RWQDAEELVAEMLRN--KCTPNEVTF 636
>gi|414885834|tpg|DAA61848.1| TPA: leaf protein [Zea mays]
Length = 637
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 16/223 (7%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ IL+ L + E + G+R ++ +I +A A+ ++M
Sbjct: 104 TYTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALINAFVEAKRMGEAINTFWKM 163
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ +G TT FN L+ G PE + F+ M E ++P+ TYN +++A+
Sbjct: 164 KHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGV-EGSVRPNLTTYNILVKAWC--- 219
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354
+ +++ ++G M +P++ TY + + A +Q T+
Sbjct: 220 DHRNLEEAWGVVGKM--QAGGFEPDIVTYNTIASAYANNDETWRAEELIVEIQ-----TR 272
Query: 355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
V +E +G + + CREGR+ E L ++ M KD VP
Sbjct: 273 VRTSERTWG----IIIGGYCREGRLEEALRCVQQM-KDAGSVP 310
Score = 47.0 bits (110), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 110/255 (43%), Gaps = 12/255 (4%)
Query: 86 PRVNDVIYDMIA--AGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
P + ++DM+ + P +++ LV A+ + + E A + + + G P T
Sbjct: 188 PEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYN 247
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
+A + + + E++ ++ + W I++ R LE+A + + G
Sbjct: 248 TIASAYANNDETWRAEELIVEIQTRVRTSERTWGIIIGGYCREGRLEEALRCVQQMKDAG 307
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
I++ ++ A D + +I ME G ++H L+ ++ G
Sbjct: 308 SVPNVVIFNTLLKGFLDANDMAAVNKILGLMEKFGIKPDIVTYSHQLNTFSSLGHMAKCM 367
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
F+ M E ++PD + Y+ + + + RA+ ++ +D+ LL M H L PNV T+
Sbjct: 368 HVFDKMI--EAGIEPDPQVYSILAKGFVRAQQPEKAEDL--LLQM---SHLGLCPNVVTF 420
Query: 324 ALLVECFTKYCAVTE 338
++ + +C+V +
Sbjct: 421 TTVI---SGWCSVAD 432
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 92/243 (37%), Gaps = 11/243 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M++ G++P +++ LV A G + A+ L+ AG P T L F G
Sbjct: 148 MLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGE 207
Query: 155 ATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ ++ M + +V + + +EDA KVF K GL Y+
Sbjct: 208 VDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNT 267
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
++ CK G AL + EM G M F L+ G E A M E
Sbjct: 268 LVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMR--E 325
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
++ + T+ +I + + D LL + R+QP+V Y L+ Y
Sbjct: 326 RGLQMNEITFTALIDGFCKKGFLDDA-----LLAVREMRQCRIQPSVVCYNALI---NGY 377
Query: 334 CAV 336
C V
Sbjct: 378 CMV 380
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 117/300 (39%), Gaps = 42/300 (14%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
+ + R DA +V D +M+ GL+P S++ LV Y G A+ G+
Sbjct: 237 ICKAGRMEDARKVFD---EMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGI 293
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANK 194
P T +L + G + + ++ M + + + + L++ + +L+DA
Sbjct: 294 MPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALL 353
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+ ++ + Y+ +I C G A E+ EMEA G ++ +LS
Sbjct: 354 AVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYC 413
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL------LGM 308
G AF N + E+ + PD TY+ +I+ + R+ D L LG+
Sbjct: 414 KNGDTHSAFQL--NQQMLENGVLPDAITYSSLIRVLCEEK---RLGDAHVLFKNMISLGL 468
Query: 309 ---------MVEDHKR------------------LQPNVKTYALLVECFTKYCAVTEAIR 341
+++ H + + P+V TY++L+ +K EA R
Sbjct: 469 QPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQR 528
>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
Length = 584
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 38/292 (13%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG-VRPLHETLIALARL 148
D++ D A S S++ ++ +NG+++ A+ + L++ +P TL+++
Sbjct: 160 DLLRDFFARMPSRDSVSWNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSA 219
Query: 149 FGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKV-FLRGAK------ 201
G GL A Y R+ I VEE + + + +K F+ GA
Sbjct: 220 IAYLGALAHGLWAHA------YVFRKC--IEVEEKLSSALINMYSKCGFIEGAVYVFDNV 271
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
GG R+ D ++ M+A G ALE+ ME+ M FN +L+ + G+ E
Sbjct: 272 GGKRSLDT-WNAMLAGFTANGYSERALELFTRMESTRLMPNKITFNTVLNACSHGGLVEE 330
Query: 262 AFATFENME--YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
F+ M YG ++PD Y C++ + RA +++ +++ + + M +P+
Sbjct: 331 GMKYFQRMSRFYG---IEPDIAHYGCMVDLFCRAGMFEKAEEIIQTMPM--------EPD 379
Query: 320 VKTY-ALLVECFT-KYCAVTEAIRH--FRALQNYEGGTKVLHN----EGNFG 363
ALL C T K + + + H A N G +L N +GN+G
Sbjct: 380 ASMLKALLGACRTHKNLELGKKVGHRLIEAAANDHAGYVLLSNIYALDGNWG 431
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 103/252 (40%), Gaps = 10/252 (3%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL P ++ L+ Y G G L + G+ P H L + +G +
Sbjct: 301 GLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEA 360
Query: 159 LEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+ + + M + +N D + ++ L ++ +EDA F + GL + +Y+ +I
Sbjct: 361 MLVFSKMRQQGLNPD-AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 419
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
C A E+ EM G T FN ++ G + F+ M +
Sbjct: 420 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMV--RIGV 477
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
KPD TY+ +I Y A D + +LL MV L+PN TY L+ + K +
Sbjct: 478 KPDIITYSTLIDGYCLAGKMD---EAMKLLSGMVS--VGLKPNTVTYRTLINGYCKISRM 532
Query: 337 TEAIRHFRALQN 348
+A+ F+ +++
Sbjct: 533 GDALVLFKEMES 544
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 76/352 (21%), Positives = 139/352 (39%), Gaps = 36/352 (10%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
D + D+ +M+ G+ P ++ +V A + A L++ ++ GV P + T
Sbjct: 234 DVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYN 293
Query: 144 ALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
L + S G + + + M + I D+ + L+ L + +++A VF A
Sbjct: 294 NLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM-LMGSLCKYGKIKEARDVFDTMAM 352
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
G Y +M+ G + ++ M G + FN L+ A CG+ +
Sbjct: 353 KGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDK 412
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A F M + +KPD TY VI A R D D E M++ + + P+
Sbjct: 413 AMIIFNEMR--DHGVKPDVVTYRTVIAALCRIGKMD---DAMEKFNQMID--QGVAPDKY 465
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381
Y L++ F + ++ +A + N +H + F S + LC+ GR+++
Sbjct: 466 AYHCLIQGFCTHGSLLKAKELISEIMN-----NGMHLDIVF---FSSIINNLCKLGRVMD 517
Query: 382 LLEALEAMAKDNQPVPPRAMILS----------------RKYRTLVSSWIEP 417
+ N + P A++ S R + +VS+ IEP
Sbjct: 518 AQNIFDLTV--NVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEP 567
>gi|255539453|ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549906|gb|EEF51393.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 475
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 11/217 (5%)
Query: 95 MIAAGLSPGPRSFHGLVVA-YTLNGDHEGAMHSLKRELS-AGVRPLHETLIALARLFGSK 152
M+ G P +++ L+ A Y L H H L E+ +G P T L + G
Sbjct: 250 MLVEGYCPDTLTYNILMCAKYRLGKLHH--FHRLLDEMGRSGFSPDFHTYNILLHVLGKG 307
Query: 153 GLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
L++L M++I +D + L++ L R L+ N F K G Y
Sbjct: 308 NKPIAALKLLNHMKEIGFDPSILHFTTLIDGLSRAGNLDACNYFFDEMIKNGFVPDVVCY 367
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+MI AG+ A EI EM A G++ F +N ++ G E A + M
Sbjct: 368 TVMITGYIVAGELEKAREIFDEMIARGQLPNVFTYNSMIRGLCMAGKFEEARCMLKEM-- 425
Query: 272 GEDYMKPDTETYNCVIQAYTRA----ESYDRVQDVAE 304
G KP+ YN ++ A E+ + ++++AE
Sbjct: 426 GSRGCKPNFLVYNTLVNNLRNAGKLSEAREVIKEMAE 462
>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 100/269 (37%), Gaps = 10/269 (3%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+N + V DM P R F L+ + G A L + AG+ P
Sbjct: 213 CKNGSVKEASKVFEDM-REKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDI 271
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRN-KYLEDANKVFL 197
L + G +++ M K ++ + +L++ L R K +++A +VF+
Sbjct: 272 VVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFV 331
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ G A Y +I+ CK G + +M G M + + ++
Sbjct: 332 EMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKE 391
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
E E M+ PD YN VI+ A V++ L M + L
Sbjct: 392 QFEECLELIEKMK--RRGCHPDLLIYNVVIRL---ACKLGEVKEAVRLWNEM--EANGLS 444
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRAL 346
P V T+ +++ FT + EA HF+ +
Sbjct: 445 PGVDTFVIMINGFTSQGFLIEACNHFKEM 473
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/356 (20%), Positives = 149/356 (41%), Gaps = 37/356 (10%)
Query: 71 IFMEELMQHARNRDAPRVND---VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSL 127
+FM +M +A +D +V++ + M G+ P ++H L+ Y GD E A L
Sbjct: 226 VFMVSIMVNAFCKDG-KVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVL 284
Query: 128 KRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI--RQAWLILVEELVR 185
K GV T L + + + + ++L M++ + +A+ +L++ R
Sbjct: 285 KFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCR 344
Query: 186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH 245
++DA ++ + GL+ I + +I CK G+ A + M ++
Sbjct: 345 TGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYS 404
Query: 246 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
+N LL G AF + M ++ ++P TYN +++ R ++D D ++
Sbjct: 405 YNTLLDGYCREGHTSEAFNLCDKML--QEGIEPTVLTYNTLLKGLCRVGAFD---DALQI 459
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFG-- 363
+M++ + P+ Y+ L++ K ++N+EG + + + G
Sbjct: 460 WHLMMK--XGVAPDEVGYSTLLDGLFK-------------MENFEGASTLWKDILARGFT 504
Query: 364 ---DPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
+ + LC+ G+++E E + M KD P YRTL+ + +
Sbjct: 505 KSRITFNTMISGLCKMGKMVEAEEIFDKM-KDLGCSPD-----GITYRTLIDGYCK 554
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
K L + +Y++ IA CK G +A + G + F + L+ + G
Sbjct: 706 CKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNV 765
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPN 319
+ AF + M + P+ TYN +I ++E+ DR Q + L K L PN
Sbjct: 766 DEAFRLRDEML--RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL-----HQKGLFPN 818
Query: 320 VKTYALLVECFTK 332
V TY L++ + K
Sbjct: 819 VVTYNTLIDGYCK 831
Score = 40.0 bits (92), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 9/199 (4%)
Query: 145 LARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
+ +++ KGL L + M K +R +L LV+N A+ V+ + +
Sbjct: 162 ILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLL-NNLVKNGETHTAHYVYQQMIRV 220
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ + +M+ CK G A +ME G ++ L++ + G E A
Sbjct: 221 GIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAA 280
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ M E + + TY +I+ Y + D + V L GM ++ L P+ +
Sbjct: 281 KGVLKFMS--EKGVSRNVVTYTLLIKGYCKQCKMDEAEKV--LRGM--QEEAALVPDERA 334
Query: 323 YALLVECFTKYCAVTEAIR 341
Y +L++ + + + +A+R
Sbjct: 335 YGVLIDGYCRTGKIDDAVR 353
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G++ + Y+++I E CKAG +ALE++ EM G +N L++ G A
Sbjct: 553 GIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAA 612
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
E + + + PD TYN +I + + D D A LL + + PN +T
Sbjct: 613 LNLLEKLP--NENVHPDIVTYNILISWHCKVRLLD---DAAMLLDKAISGG--IVPNERT 665
Query: 323 YALLVECFTK 332
+ ++V+ F +
Sbjct: 666 WGMMVQNFVR 675
>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 484
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 22/239 (9%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
W+++++ + ++++ K+F + + G+ T + Y+ + + G + A +M
Sbjct: 83 WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKAILRRGRYMMAKRYFNKML 142
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+ G FN ++ G E A FE+M+ E + PD TYN +I Y R +
Sbjct: 143 SEGIEPARHTFNVMIWGFFLSGKVETANRFFEDMKSRE--ISPDVVTYNTMINGYYRVKK 200
Query: 296 YDRVQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354
+ + E+ G + ++P V TY L++ + V +A+R ++ G
Sbjct: 201 MEEAEKYFVEMKG------RNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMK----GFG 250
Query: 355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSS 413
+ N + S L LC G++IE L+ M D P I R L+SS
Sbjct: 251 IKPNAITY----STLLPGLCNAGKMIEARSILKEMM-DKYLAPTDNSIFMR----LISS 300
>gi|218191977|gb|EEC74404.1| hypothetical protein OsI_09760 [Oryza sativa Indica Group]
Length = 407
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 93/225 (41%), Gaps = 19/225 (8%)
Query: 158 GLEILAAMEKINYDIRQAWLI-LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+ ILA ++++ R + + LV+ L + A V A+G Y+ +IA
Sbjct: 146 AIAILATLDEVGGPCRASGVFSLVKALASICEFDAAMSVIQETARGA-----RYYNALIA 200
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
CK GD A E+ EM +G + +N+LL C G A E ME E
Sbjct: 201 VKCKTGDFHGAREVFDEMRRSGFGPNSNSWNYLLGCLLKNGRVAEACELVEAMERSEHND 260
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
P++ TY I AY ++ R+ +L M + +L P + + ++ + +
Sbjct: 261 IPNSLTYE--ILAYHACKA-GRMDSAMRILDQMFLE--KLTPRITIHTAFIKGYLYAGRI 315
Query: 337 TEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381
+A R+ A+ + + SL + LC+ G I++
Sbjct: 316 DDACRYVSAMST--------RDRRSVNRNYSLLAKLLCKAGMIVD 352
>gi|308810889|ref|XP_003082753.1| pentatricopeptide (ISS) [Ostreococcus tauri]
gi|116061222|emb|CAL56610.1| pentatricopeptide (ISS) [Ostreococcus tauri]
Length = 923
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 93/225 (41%), Gaps = 27/225 (12%)
Query: 104 PRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILA 163
PR+ G +A TL H+G + + R+ V + ARLF + A+ G L
Sbjct: 61 PRAIVGPRLASTLASGHKGFVDACARQRRMDV------ALRYARLFDADKAASDGEPDL- 113
Query: 164 AMEKINYDIRQAWLILVEELVRNKYLEDANKVF-LRGAKGGLRATDEIYDLMIAEDCKAG 222
+ ++ R K A + F LR + GL Y +++ K G
Sbjct: 114 ------------FCAVINACGRAKDWAVAREAFDLRRTEAGLAPDPFAYSALVSSAAKCG 161
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
++ A E A+E A T +N + A+ G E A AT E M+ + +KP+ +
Sbjct: 162 NYVAARE-AFEEANAAHAVDTVVYNAFIDACASRGDYEGARATLERMKTTAN-VKPNIRS 219
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
YN VI A TR + + E L + +L P + TY ++
Sbjct: 220 YNGVISASTRRKHFSGALAAWEELQL-----AKLAPTIITYGAML 259
>gi|42570403|ref|NP_850357.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330254930|gb|AEC10024.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 683
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 81/180 (45%), Gaps = 8/180 (4%)
Query: 169 NYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
NY R + +++ R+ +++ A +F K + E YD +I +AG A
Sbjct: 6 NYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWA 65
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
+ + +M A + +N+L++ + G A + M ++ + PD T+N V+
Sbjct: 66 MNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMT--DNGVGPDLVTHNIVL 123
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
AY Y + EL+ +++P+ T+ +++ C +K ++A+ F +++
Sbjct: 124 SAYKSGRQYSKALSYFELM-----KGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMR 178
>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g20300, mitochondrial; Flags: Precursor
gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
contains multiple PPR PF|01535 repeats [Arabidopsis
thaliana]
gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LV R + +A KVF G+ Y ++I C+ G S A ++ +M +G
Sbjct: 261 LVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSG 320
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
FN+L+ G E + M+ + +PDT TYN +I+A+ R E+
Sbjct: 321 CAPNAITFNNLMRVHVKAGRTEKVLQVYNQMK--KLGCEPDTITYNFLIEAHCRDEN--- 375
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTY 323
+++ ++L M++ K+ + N T+
Sbjct: 376 LENAVKVLNTMIK--KKCEVNASTF 398
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 30/223 (13%)
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDI---RQAWLILVEELVRNKYLEDANKVF 196
ET L R + GLA++ + ME +Y + A+ I++ L R + +A F
Sbjct: 187 ETFTILIRRYVRAGLASEAVHCFNRME--DYGCVPDKIAFSIVISNLSRKRRASEAQS-F 243
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
K +Y ++ C+AG+ S A ++ EM+ AG + ++ ++ C
Sbjct: 244 FDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRC 303
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G A F +M + P+ T+N +++ + +A R + V ++ M K+L
Sbjct: 304 GQISRAHDVFADM--LDSGCAPNAITFNNLMRVHVKA---GRTEKVLQVYNQM----KKL 354
Query: 317 --QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+P+ TY L+E H R +N E KVL+
Sbjct: 355 GCEPDTITYNFLIEA------------HCRD-ENLENAVKVLN 384
>gi|255660908|gb|ACU25623.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 481
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
W+++++ + ++++ K+F + + G+ T + YD + + G + A +M
Sbjct: 83 WVMMIDSYGKQGIVQESVKLFQKMEELGVERTLKSYDALFKVILRRGRYMMAKRYFNKML 142
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
+ G T FN L+ G E A FE+M+ E + PD TYN +I Y R +
Sbjct: 143 SEGIEPTRXXFNVLIWGFFLSGKVETANRFFEDMKSRE--ISPDVVTYNTMINGYYRVKK 200
Query: 296 YDRVQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
+ + E+ G + ++P V TY L++ + V +A+R
Sbjct: 201 MEEAEKYFVEMKG------RNIEPTVVTYTTLIKGYVSVDQVDDALR 241
>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 128/317 (40%), Gaps = 24/317 (7%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
++ M +AGL P +F L+ G E A L + G+ T AL
Sbjct: 461 NIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGH 520
Query: 150 GSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G A + M E + ++ L ++ L +AN + + K GL +
Sbjct: 521 CKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSV 580
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFE 267
+ ++I C+AG+ + +L++ M+ AG + + +++ G + E F
Sbjct: 581 VTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFS 640
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
+G + P+ TY +++A+ +A DR +++ MV++ QPN Y+ L+
Sbjct: 641 MSSFG---VSPNHFTYAVLVKAHVKAGRLDR---AFQIVSTMVKNG--CQPNSHIYSALL 692
Query: 328 ECFTKYCAVTEAIRHF--------RALQNYEGGTKVLHNE-GNFGDP----LSLYLRALC 374
F A R R+L + E L NE G P + + LC
Sbjct: 693 SGFVLSNTAIGA-RALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLC 751
Query: 375 REGRIIELLEALEAMAK 391
+EGRIIE + + M K
Sbjct: 752 KEGRIIEADQLTQDMVK 768
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 22/247 (8%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
R N V Y ++ HGL A G E A + + G +P T L
Sbjct: 262 RPNSVTYSIL----------IHGLCEA----GRLEEAFQLKQEMVEKGCQPSTRTYTVLI 307
Query: 147 RLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
+ G+ K +++L M K + IL++ L R +E+AN VF + K GL
Sbjct: 308 KAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLC 367
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
++ +I CK G +A ++ ME +N L+ + C + + A
Sbjct: 368 PGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELM--EGLCRVSKSYKAF 425
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
++ + PD TYN ++ + + + ++ + + L+P+ T+
Sbjct: 426 LLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSM-----NSAGLEPDGFTFTA 480
Query: 326 LVECFTK 332
L++ K
Sbjct: 481 LIDGLCK 487
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 72/329 (21%), Positives = 132/329 (40%), Gaps = 24/329 (7%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D+ +M++ +SP ++ L+ + + G + A+ R +S + P T L F
Sbjct: 219 DLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGF 278
Query: 150 GSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G + +LA M K N + + L++ K + A +F A+ G+
Sbjct: 279 CKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDV 338
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y +MI CK A+++ EM +N L+ G A +
Sbjct: 339 WSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDE 398
Query: 269 MEYGEDYMKP-DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M D +P + TYN ++ A + D+ A +L +++ K +QP++ TY +L+
Sbjct: 399 MH---DRGQPSNIITYNSILDAICKNNHVDK----AIVLLTKIKE-KGIQPDIFTYTVLI 450
Query: 328 ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
K + +A + F L +G + ++ + + C +G E L L
Sbjct: 451 NGLCKVGRLDDAQKVFEDLL-VKGYSPNIYTYTSL-------INGFCNKGFFDEGLAMLS 502
Query: 388 AMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
M KDN +P + Y L+ S E
Sbjct: 503 KM-KDNGCIPN-----AITYEILIHSLFE 525
>gi|238480176|ref|NP_001154199.1| uncharacterized protein [Arabidopsis thaliana]
gi|223635643|sp|Q8LDU5.2|PP298_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g01400, mitochondrial; Flags: Precursor
gi|332656621|gb|AEE82021.1| uncharacterized protein [Arabidopsis thaliana]
Length = 466
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 22/221 (9%)
Query: 173 RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAY 232
R + LIL+ +L R +Y + V + G T EI+ +I +A L Y
Sbjct: 84 RSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFY 143
Query: 233 EMEAAGRMATTFHFNHLLSCQATC-GIPEVAFATFENME-YGEDYMKPDTETYNCVIQAY 290
+M H N +L + G + AF F++ +G + P+T +YN ++QA+
Sbjct: 144 KMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHG---VMPNTRSYNLLMQAF 200
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
D + +L G M+E + + P+V +Y +L++ F + V A+ +
Sbjct: 201 CLN---DDLSIAYQLFGKMLE--RDVVPDVDSYKILIQGFCRKGQVNGAMELLDDML--- 252
Query: 351 GGTKVLHNEGNFGDPLSL--YLRALCREGRIIELLEALEAM 389
N+G D LS L +LCR+ ++ E + L M
Sbjct: 253 -------NKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRM 286
Score = 45.8 bits (107), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 82/209 (39%), Gaps = 3/209 (1%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P RS++ L+ A+ LN D A + L V P ++ L + F KG
Sbjct: 185 GVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGA 244
Query: 159 LEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+E+L M + R ++ L+ L R L +A K+ R G Y+ MI
Sbjct: 245 MELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILG 304
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
C+ +A ++ +M + G + + L+ G+ + E M
Sbjct: 305 FCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMI--SKGFS 362
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELL 306
P NC+++ + + DV E++
Sbjct: 363 PHFSVSNCLVKGFCSFGKVEEACDVVEVV 391
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 21/206 (10%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
++++I CK + S AL++ EM++ G T +N L++ C ++ A E
Sbjct: 306 FNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVN--GLCNEGKLNEAKVLLDE 363
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+KP+ TYN +I Y + + + +++ + +G + L PNV T+ L+ +
Sbjct: 364 MLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIG-----KQGLTPNVITFNTLLHGY 418
Query: 331 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
K+ + EA LQ L N + + + CREG++ E+ L M
Sbjct: 419 CKFGKMEEAF----LLQKVMLEKGFLPNASTY----NCLIVGFCREGKMEEVKNLLNEM- 469
Query: 391 KDNQPVPPRAMILSRKYRTLVSSWIE 416
Q +A ++ Y L+S+W E
Sbjct: 470 ---QCRGVKADTVT--YNILISAWCE 490
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 7/155 (4%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
+L++ +++ L A KVF GL+ T Y+ ++ C G + A + EM ++
Sbjct: 308 VLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSS 367
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
+N L++ + E A F+N+ G+ + P+ T+N ++ Y + +
Sbjct: 368 NLKPNVITYNALINGYCKKKLLEEARELFDNI--GKQGLTPNVITFNTLLHGYCK---FG 422
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
++++ L +M+E K PN TY L+ F +
Sbjct: 423 KMEEAFLLQKVMLE--KGFLPNASTYNCLIVGFCR 455
Score = 39.7 bits (91), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 21/148 (14%)
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
P+ TYN +I Y + ++ +L MVE+ ++ PN T+ +L++ F K ++
Sbjct: 263 PNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVEN--KVSPNSVTFNVLIDGFCKDENLS 320
Query: 338 EAIRHFRALQNYEG--GTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQP 395
A++ F +Q+ +G T V +N + LC EG++ E L+ M N
Sbjct: 321 AALKVFEEMQS-QGLKPTVVTYNS---------LVNGLCNEGKLNEAKVLLDEMLSSN-- 368
Query: 396 VPPRAMILSRKYRTLVSSWI-EPLQEEA 422
+ P + Y L++ + + L EEA
Sbjct: 369 LKPNVI----TYNALINGYCKKKLLEEA 392
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M++ +SP ++ L+ + G + +S G++P T L ++ G
Sbjct: 388 EMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAG 447
Query: 154 LATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ M ++ + L++ L ++ L+ AN++ K GL+ IY+
Sbjct: 448 EMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYN 507
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
M+ CKAG+ A+++ EME AG
Sbjct: 508 SMVNGICKAGNIEQAIKLMKEMEVAG---------------------------------- 533
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ PD TY VI AY R D+ +LL M++ + LQP V T+ +L+ F
Sbjct: 534 ---IDPDAITYTTVIDAYCRLGDIDKAH---KLLQEMLD--RGLQPTVVTFNVLMNGFC 584
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 13/164 (7%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M AG+ P ++ ++ AY GD + A L+ L G++P T L F G
Sbjct: 528 EMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLG 587
Query: 154 LATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+ G +L M + I Y+ ++ + +RN + K++ R G+
Sbjct: 588 MLEDGDRLLGWMLEKGIVPDAITYNT-----LMKQHCIRNS-MNTTTKIYKRMRNQGVAP 641
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
Y+++I CKA + A + EM G + T +N L+
Sbjct: 642 DSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALI 685
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G++ + Y+++I E CKAG +ALE++ EM G +N L++ G A
Sbjct: 556 GIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAA 615
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
E + + + PD TYN +I + + D D + LL V + PN +T
Sbjct: 616 LNLLEKLP--NENVHPDIVTYNILISWHCKVRLLD---DASMLLDKAVSGG--IVPNERT 668
Query: 323 YALLVECFTK 332
+ ++V+ F +
Sbjct: 669 WGMMVQNFVR 678
>gi|224112321|ref|XP_002316152.1| predicted protein [Populus trichocarpa]
gi|222865192|gb|EEF02323.1| predicted protein [Populus trichocarpa]
Length = 785
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 96/229 (41%), Gaps = 8/229 (3%)
Query: 121 EGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLIL 179
E + K+ +G + ET L +LF +KGL K EI ME + + + ++
Sbjct: 209 EVSFCCFKKVQDSGCKIDTETYNILMKLFLNKGLPYKAFEIYETMEAAHCSLDVSTYELM 268
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR 239
+ L ++ L+ A K+F + R + I+ ++ KAG ++++ EM+ G
Sbjct: 269 IPSLAKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVYMEMQGLGL 328
Query: 240 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 299
+ + L+ G + A ++ M+ +P+ Y +I+++ ++ D
Sbjct: 329 RPSAIMYVSLIESYTKAGKLDAALRLWDEMKIAG--FRPNFGLYTLIIESHAKSGKLDIA 386
Query: 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
+ + + P TY+ L+E V A++ + ++ N
Sbjct: 387 MSIFRDM-----EKAGFLPTPSTYSSLLEMHAASGQVDAAMKLYNSMTN 430
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 67 GLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHS 126
GL + +E HA++ + DM AG P P ++ L+ + +G + AM
Sbjct: 368 GLYTLIIES---HAKSGKLDIAMSIFRDMEKAGFLPTPSTYSSLLEMHAASGQVDAAMKL 424
Query: 127 LKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI 172
+AG+RP T AL L K L +IL M+ + + +
Sbjct: 425 YNSMTNAGLRPGLSTYTALLTLLAHKKLVDVAAKILLEMKAMGFSV 470
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 8/216 (3%)
Query: 76 LMQHARNRDAPRVNDVIYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAG 134
LM+ N+ P IY+ M AA S ++ ++ + +G + A +
Sbjct: 233 LMKLFLNKGLPYKAFEIYETMEAAHCSLDVSTYELMIPSLAKSGRLDAAFKLFQEMKERN 292
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA---WLILVEELVRNKYLED 191
RP +L G G +++ M+ + +R + ++ L+E + L+
Sbjct: 293 FRPSLGIFSSLVDSMGKAGRLETSMKVYMEMQGLG--LRPSAIMYVSLIESYTKAGKLDA 350
Query: 192 ANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS 251
A +++ G R +Y L+I K+G A+ I +ME AG + T ++ LL
Sbjct: 351 ALRLWDEMKIAGFRPNFGLYTLIIESHAKSGKLDIAMSIFRDMEKAGFLPTPSTYSSLLE 410
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
A G + A + +M ++P TY ++
Sbjct: 411 MHAASGQVDAAMKLYNSMTNAG--LRPGLSTYTALL 444
>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Brachypodium distachyon]
Length = 821
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 86/411 (20%), Positives = 156/411 (37%), Gaps = 78/411 (18%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I+ + HAR +++ DM+ A + P +++ ++ A G+ + A+ K+
Sbjct: 192 IYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKM 251
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYL 189
GV P T + F + +K + M+ N L I++ LV++
Sbjct: 252 TRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQY 311
Query: 190 EDANKVF--LRGAK--------------------GGLRATDEIYDLMIAEDCKA------ 221
+A ++ +R + G + ++D+M+AE K
Sbjct: 312 GEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYN 371
Query: 222 ---------GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
G H++AL I ++ G + LL+ G PE A F+ M
Sbjct: 372 ALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMR-- 429
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYA-LLVEC-- 329
++ +P+ +YN +I AY A + ++ LL M +D + P+V + + LL C
Sbjct: 430 KNSCRPNIVSYNALIDAYGSAGMF---KEAISLLHEMEKDG--IPPDVVSISTLLTACGR 484
Query: 330 ---FTKYCAVTEAIRHFRALQN---YEGGTKVLHNEGNFGDPLSLY-------------- 369
TK + EA + N Y G N G++G L LY
Sbjct: 485 CRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVT 544
Query: 370 ----LRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
+ LC+ G+ E L+ E M P+ Y +L+ S+++
Sbjct: 545 YNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEV------YSSLICSYVK 589
Score = 45.8 bits (107), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 120/309 (38%), Gaps = 28/309 (9%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL P S+ L+ AY +G E A + K RP + AL +GS G+ +
Sbjct: 397 GLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEA 456
Query: 159 LEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+ +L MEK I D+ L+ R + + + + G++ Y+ I
Sbjct: 457 ISLLHEMEKDGIPPDVVSI-STLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIG 515
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
GD+ ALE+ M A+ +N L+S G + FE+M D
Sbjct: 516 SYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDM---VDLR 572
Query: 277 KPDT-ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCA 335
P T E Y+ +I +Y + ++ + M E P+V TY ++E + +
Sbjct: 573 IPLTKEVYSSLICSYVKQ---GKLTEAESTFSSMKESG--CLPDVLTYTAMIEAYNDDGS 627
Query: 336 VTEAIRHFRALQNYEGGTKVLHNEGNFGDP----LSLYLRALCREGRIIELLEALEAMAK 391
A F+ + EGN P S + AL R + +L+ +E M +
Sbjct: 628 WRNAWDLFKEM------------EGNTVQPDAIICSSLMEALNRGSQHERVLQLMELMKE 675
Query: 392 DNQPVPPRA 400
P+ +A
Sbjct: 676 KCIPLNQKA 684
>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 685
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 100/253 (39%), Gaps = 7/253 (2%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M + G P ++ ++ AY G+ + A+ R + R T L +++G G
Sbjct: 223 MSSFGCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAGN 282
Query: 155 ATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
L + M+ + + L++ + R K A ++ G Y
Sbjct: 283 YDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYAS 342
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
++ + +AL + EM+ G T +N LL+ A G+ AF FE+M+
Sbjct: 343 LLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSA 402
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
+ D+ T++ +I Y+ V + +L M+E QP + LV+C+ K
Sbjct: 403 TCL-CDSWTFSSLITIYS---CTGNVSEAERMLNEMIESGS--QPTIFVLTSLVQCYGKV 456
Query: 334 CAVTEAIRHFRAL 346
+ ++ F L
Sbjct: 457 GRTDDVVKTFNQL 469
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 109/300 (36%), Gaps = 50/300 (16%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M + GL ++ L+ +G + A + LS G++P H T +L G G
Sbjct: 219 EMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAG 278
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
A+ +A ++F G +Y++
Sbjct: 279 RAS----------------------------------EARRIFQEARDVGCALDVNLYNV 304
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
+I CK+ A EI E+E G + + FN L+ G AF +M+
Sbjct: 305 LIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAG 364
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
PD YN +I ++ RV++ +LL M +P+V TY L++ K
Sbjct: 365 --CTPDVTVYNTLIDGLRKS---GRVEEAGQLLLEM--QSLGYEPDVVTYNTLIDESCKG 417
Query: 334 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393
+ +A+R F + V +N L LC GR+ E + M ++
Sbjct: 418 GRIEDALRLFEEISAKGFANTVTYNT---------ILNGLCMAGRVDEAYKLFNGMKQET 468
Score = 39.7 bits (91), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ L ++ +E+A ++ L G Y+ +I E CK G +AL + E+ A G
Sbjct: 375 LIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKG 434
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNCVIQAYTRA 293
A T +N +L+ G + A+ F M E + + PD TY ++ +A
Sbjct: 435 -FANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQA 490
>gi|116789832|gb|ABK25404.1| unknown [Picea sitchensis]
Length = 278
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 9/169 (5%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
Q + ++ + + L++A ++F K GL ++ Y MI+ KAG +A ++
Sbjct: 11 QTYNTMISVYGKARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGFFQDAAKLFSR 70
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+ G +N +L A G+ A F +M+ ++ PD+ TY +I AYT
Sbjct: 71 MQQEGIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQ--DEGYSPDSYTYLSLICAYTNC 128
Query: 294 ESYDRVQDVAELLGMMVEDHKR-LQPNVKTYALLVECFTKYCAVTEAIR 341
+ R Q+ +LL M H++ L P + + LV F K V +A R
Sbjct: 129 Q---RFQEAEDLLKRM---HRQGLAPGLVHFNHLVFAFGKAGLVEDATR 171
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 17/158 (10%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G+ + + Y+ MI+ KA + NA++I ++ +G +++++SC G + A
Sbjct: 5 GIVPSLQTYNTMISVYGKARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGFFQDA 64
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F M+ ++ +KP TYN ++ AY R+ + R ++V M E + P+ T
Sbjct: 65 AKLFSRMQ--QEGIKPGKVTYNTMLDAYARSGLHTRAEEVFN--DMQDEGYS---PDSYT 117
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEG 360
Y L+ CA T R Q E K +H +G
Sbjct: 118 YLSLI------CAYTNCQR----FQEAEDLLKRMHRQG 145
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M++ +SP ++ L+ + G + +S G++P T L ++ G
Sbjct: 388 EMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAG 447
Query: 154 LATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+ M ++ + L++ L ++ L+ AN++ K GL+ IY+
Sbjct: 448 EMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYN 507
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
M+ CKAG+ A+++ EME AG
Sbjct: 508 SMVNGICKAGNIEQAIKLMKEMEVAG---------------------------------- 533
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ PD TY VI AY R D+ +LL M++ + LQP V T+ +L+ F
Sbjct: 534 ---IDPDAITYTTVIDAYCRLGDIDKAH---KLLQEMLD--RGLQPTVVTFNVLMNGFC 584
Score = 44.7 bits (104), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 13/164 (7%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M AG+ P ++ ++ AY GD + A L+ L G++P T L F G
Sbjct: 528 EMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLG 587
Query: 154 LATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+ G +L M + I Y+ ++ + +RN + K++ R G+
Sbjct: 588 MLEDGDRLLGWMLEKGIVPDAITYNT-----LMKQHCIRNS-MNTTTKIYKRMRNQGVAP 641
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
Y+++I CKA + A + EM G + T +N L+
Sbjct: 642 DSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALI 685
>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
Length = 447
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 129/308 (41%), Gaps = 27/308 (8%)
Query: 85 APRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA 144
A R + +M A+G+ P S+H L+ A + +G A H+L ++ P T
Sbjct: 108 AGRAIEFFKEMKASGVEPDLESYHILLSALSDSGRMAEA-HALFSAMTC--SPDIMTYNV 164
Query: 145 LARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGG 203
L + G + ++ + K Y+ + I++ + +E+A +VF++ +
Sbjct: 165 LMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESN 224
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLS--CQATCGIPEV 261
++ +IA CKAG +A+++ EME G AT +N L+ C+ G+
Sbjct: 225 CVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGV-YT 283
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A F +E + P TYN +IQ ++ +R D LL M + +P+V
Sbjct: 284 AVDLFNKLEGAG--LTPTIVTYNSLIQGFS-----ERANDGLRLLCHM--HAEGCKPDVI 334
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIE 381
TY L+ V +A R F G N F + +R LC + ++ E
Sbjct: 335 TYNCLISGLCSANRVEDAQRLFN-------GMACAPNVTTF----NFLIRGLCAQKKVEE 383
Query: 382 LLEALEAM 389
L+ M
Sbjct: 384 ARNILDRM 391
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 38/266 (14%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ D I G P +F+ L+ Y + A+ ++R + G+ P T ++
Sbjct: 442 VMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLC 501
Query: 151 SKGLATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
G A + E M I Y+I L+E + LE+A+ V +R + G
Sbjct: 502 KAGKAKEVNETFEEMILKGCRPNAITYNI------LIENFCKINQLEEASGVIVRMCQDG 555
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
L ++ +I C+ GD A + +++ G AT FN L+ A+
Sbjct: 556 LVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIG----------AY 605
Query: 264 ATFENMEYGEDYM--------KPDTETYNCVIQAYTRAESYDRV-QDVAELLGMMVEDHK 314
++ NM+ E KPD TY ++ +A + DR +AE++ K
Sbjct: 606 SSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMIS------K 659
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAI 340
P++ T+ ++ V+EA+
Sbjct: 660 GFVPSMATFGRMLNLLAMNHRVSEAV 685
>gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa]
gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa]
Length = 575
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 14/245 (5%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
F L+ AY GD GA L+ G P + AL +G G I M+
Sbjct: 119 FLMLITAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQ 178
Query: 167 KINYDIRQ-AWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAEDCKAG 222
+ + I+++ V ++A +VF L L +++ +MI KAG
Sbjct: 179 TSGPEPSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAG 238
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
++ A ++ M G +T +N L+S + EV+ ++ M+ ++PD +
Sbjct: 239 NYEKARKVFALMAERGVPQSTVTYNSLMSFETN--YKEVS-KIYDQMQ--RSGLRPDVVS 293
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRH 342
Y +I+AY RA R ++ + M++ R P+ K Y +L++ F V +A
Sbjct: 294 YALLIKAYGRAR---REEEALAVFEEMLDAGVR--PSHKAYNILLDAFAISGMVEQARVV 348
Query: 343 FRALQ 347
F++++
Sbjct: 349 FKSMR 353
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 7/158 (4%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
++ +K++ + + GLR Y L+I +A AL + EM AG + +N L
Sbjct: 273 KEVSKIYDQMQRSGLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNIL 332
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
L A G+ E A F++M D PD +Y ++ AY A + ++ + L
Sbjct: 333 LDAFAISGMVEQARVVFKSMR--RDRCTPDLCSYTTMLSAYVNASDMEGAENFFKRL--- 387
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
L+PNV TY L++ K + + + + +Q
Sbjct: 388 --RQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQ 423
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 9/219 (4%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
IYD M +GL P S+ L+ AY E A+ + L AGVRP H+ L F
Sbjct: 278 IYDQMQRSGLRPDVVSYALLIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFA 337
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G+ + + +M ++ D+ ++ ++ V +E A F R + GL+
Sbjct: 338 ISGMVEQARVVFKSMRRDRCTPDL-CSYTTMLSAYVNASDMEGAENFFKRLRQDGLKPNV 396
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y +I K + +EI EM+ A ++ A ++
Sbjct: 397 VTYGALIKGHAKVNNLEKMMEIYEEMQLNSIKANQTILTTIMDAYGKNKDFGSAVIWYKE 456
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
ME+ + PD + N ++ + A++ D ++ ++L+G
Sbjct: 457 MEHHG--VPPDQKAQNILL---SLAKTQDEQKEASQLVG 490
>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 439
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 7/173 (4%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + IL+E R L A +++ G + Y +M+ CKAG A+EI E
Sbjct: 160 KTYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKE 219
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+ ++F ++ L+ E A +TF ME + + D YN +I A+ +A
Sbjct: 220 MDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEME--RNGVMADVAAYNALISAFCKA 277
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
+++++V +L M D K + PN +T +++ EA + FR +
Sbjct: 278 ---NKMKNVYRVLKDM--DLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRM 325
>gi|443916819|gb|ELU37766.1| pentatricopeptide repeat protein [Rhizoctonia solani AG-1 IA]
Length = 616
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 9/192 (4%)
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
+ +IALA + A I+A + D A + ++ + ++ A ++F
Sbjct: 173 QMVIALAHAERPEAAAIHKSRIIAQGGSPSADAYGALIAGIKNTTDDAHV--ARELFEEA 230
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
K G+ A +Y+ +I++ +A ALE+ +EM AAG T+ + ++ G
Sbjct: 231 RKLGVPANIFLYNTVISKAARARKAEYALELFHEMRAAGLRPTSVTYGAIIGACCRVGDA 290
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE-SYDRVQDVAELLGMMVEDHKRLQP 318
E A F M ++ KP YN ++Q + + + +R D + M++ R++P
Sbjct: 291 ETASYLFAEMSSMPNF-KPRVPPYNTMMQFFVHTKPNRERCLDYYQ---AMLD--ARVRP 344
Query: 319 NVKTYALLVECF 330
+ TY LL++C+
Sbjct: 345 SSHTYKLLLDCY 356
>gi|384253364|gb|EIE26839.1| hypothetical protein COCSUDRAFT_59346 [Coccomyxa subellipsoidea
C-169]
Length = 529
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 150/391 (38%), Gaps = 101/391 (25%)
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE--IAYEMEAAGRMATTFH 245
Y +DA ++ +G G ++Y+ ++A C D + E + E++ AG H
Sbjct: 18 YPDDAYQLVQKGRLDGWYPDADLYENLLAWMCTQDDLVDEAEQIVRQELQEAGIQPEARH 77
Query: 246 FNHLLSCQA-TCGIPEVAFATFENMEYGEDYM--KPDTETYNCVIQAYTRAESYDRVQDV 302
N L+ +A + + M+ G + +P+ +TYN + Q
Sbjct: 78 ANPLVFAEARNVSVHTAMSGPLKEMQEGRLGVGCRPNADTYNAITQ-------------- 123
Query: 303 AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNF 362
E+ G M++ L+ N +T+AL V+ C A+ F + L G
Sbjct: 124 -EVKGDMIK--AGLKWNKRTHALFVDVHLLECNTEFAMMAFEDMVK-------LSLPGTA 173
Query: 363 GDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEA 422
LS +G + LL +L A+DNQP
Sbjct: 174 TQYLS--------DGVFMHLLMSL---ARDNQPAD------------------------- 197
Query: 423 ELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYS---NPMETSFKQRCLE 479
I R ++ + E R +P P+ FI S ++++ R +E
Sbjct: 198 --------ILRVLT---VAQEDSRQLPDDAMQPIGSAGGSFISSWLPAALDSARSMRSVE 246
Query: 480 DGKKYHRKLLRTLQNEGPAVLGDVSESDYVRVEERLKKLIKGPEQHVLKPK----AASKM 535
L Q+E E D V ++E ++ ++ GP + +ASK+
Sbjct: 247 G--------LTKKQSE---------EDDEVDLQE-VEGVLIGPGGFAVTEDGAVISASKL 288
Query: 536 VVSELKEELDAQGLPTDGTRNVLYQRVQKAR 566
V +L+ EL A+GL TDG R LY+RVQ AR
Sbjct: 289 TVGQLRGELAARGLSTDGRRQELYRRVQAAR 319
>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
Length = 327
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 9/167 (5%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ IL+ L R+ +E+A + + GL YD +IA CK A+E M
Sbjct: 132 TYSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESM 191
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G + ++N +LS G + A FE + GE P+ +YN + A +
Sbjct: 192 ISDGCLPDIVNYNTILSTLCKNGKADEALKIFEKL--GEVGCPPNVSSYNTLFSALWSSG 249
Query: 295 SYDRVQDVAELLGMMVED-HKRLQPNVKTYALLVECFTKYCAVTEAI 340
R LGM++E K + P+ TY L+ C + V +AI
Sbjct: 250 HKIRA------LGMILEMLSKDIDPDEITYNSLISCLCRDAMVDQAI 290
Score = 40.4 bits (93), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 96/249 (38%), Gaps = 38/249 (15%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ IL+E + ++D K+ + GLR I++ ++ C+ G A E +
Sbjct: 27 TYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIRYI 86
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM--------KPDTETYNCV 286
A G ++ LL E GE M +P+ TY+ +
Sbjct: 87 SAKGYAPDVISYSILLR----------GLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSIL 136
Query: 287 IQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
I + R +V++ LL +M E + L P+ +Y L+ F K V AI ++
Sbjct: 137 ISSLCRD---GKVEEAVSLLKVMKE--QGLTPDAYSYDPLIAAFCKESRVDLAIEFLESM 191
Query: 347 QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRK 406
+ L + N+ LS LC+ G+ E L+ E + + PP
Sbjct: 192 IS----DGCLPDIVNYNTILS----TLCKNGKADEALKIFEKLGEVG--CPPNV----SS 237
Query: 407 YRTLVSS-W 414
Y TL S+ W
Sbjct: 238 YNTLFSALW 246
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 86/218 (39%), Gaps = 18/218 (8%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM++ G P ++ L+ + +G E A+ LK G+ P + L F +
Sbjct: 120 DMLSKGCEPNVVTYSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKES 179
Query: 154 LATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
+E L +M + +NY+ ++ L +N ++A K+F + + G
Sbjct: 180 RVDLAIEFLESMISDGCLPDIVNYNT------ILSTLCKNGKADEALKIFEKLGEVGCPP 233
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y+ + + +G AL + EM + +N L+SC + + A
Sbjct: 234 NVSSYNTLFSALWSSGHKIRALGMILEMLSKDIDPDEITYNSLISCLCRDAMVDQAIELL 293
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
+ME +P +YN V+ ++ R+ D E
Sbjct: 294 VDME--SSVYQPSVISYNIVLLGLSKVH---RISDAIE 326
>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
Length = 574
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 112/308 (36%), Gaps = 43/308 (13%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R + +N+++ +MI G P +++ L+ Y D + ++ G P
Sbjct: 78 GRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDR 137
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T L L G +E+ M+ + + I++ L + L A K+F
Sbjct: 138 VTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCE 197
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G + Y+++I KAG AL++ +++ G + ++ CG
Sbjct: 198 MTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGH 257
Query: 259 PEVAFATFENME----------YG-----------------------EDYMKPDTETYNC 285
E A FE ME +G + ++P+ N
Sbjct: 258 IEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNS 317
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRA 345
++ AY R+ YD V LG M + L P ++TY L+ CA A + A
Sbjct: 318 LLSAYLRSSFYDAAGGV---LGGMAK--WGLYPTLQTYTSLLSS----CAACRAAWEYDA 368
Query: 346 LQNYEGGT 353
L GGT
Sbjct: 369 LFGLMGGT 376
>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
Length = 696
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 104/257 (40%), Gaps = 14/257 (5%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ MI + P +++ L+ Y +G A+ LK G RP T L
Sbjct: 309 VLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLC 368
Query: 151 SKGLATKGLEILAAM----EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
GL + EI +M +K N + L+ L D N V + G+R
Sbjct: 369 KSGLHAEAREIFNSMIQSGQKPN---ASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRP 425
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
++++ I CK G A +M+ G M + ++ G + A + F
Sbjct: 426 GRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRF 485
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
M +D + PD T+N +I + +++ + EL M++ + + PNV T+ +
Sbjct: 486 CQMI--DDGLSPDIITFNTLIHGFALHGKWEKAE---ELFYEMMD--RGIPPNVNTFNSM 538
Query: 327 VECFTKYCAVTEAIRHF 343
++ K VTEA + F
Sbjct: 539 IDKLFKEGKVTEARKLF 555
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 131/319 (41%), Gaps = 25/319 (7%)
Query: 83 RDAPRVNDVIYDMIA-AG---LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
RD P + +++ +A AG ++P +F L+ G +L + + G+R
Sbjct: 119 RDGPALAVSMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQ 178
Query: 139 HETLIALARLFGSKGLATKGLEI-LAAMEKINY--DIRQAWLILVEELVRNKYLEDANKV 195
T L R ++ + + I L M ++ D+ ++ L++ L K E+A ++
Sbjct: 179 AVTFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVF-SYTTLLKGLCAEKKCEEAAEL 237
Query: 196 FLRGAKGGLRATDEI--YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
A+ G + Y +I K GD A + +M G N ++
Sbjct: 238 IHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGL 297
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
+ A A + M ++++ P+ TYN +I Y + + + +L M D
Sbjct: 298 CKVQAMDKAEAVLQQMI--DEHIMPNCTTYNSLIHGYLSSGQW---TEAVRILKEMSRDG 352
Query: 314 KRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRAL 373
+R PNV TY++L++C K EA F ++ + G K N +G L Y
Sbjct: 353 QR--PNVVTYSMLIDCLCKSGLHAEAREIFNSM--IQSGQK--PNASTYGSLLHGYA--- 403
Query: 374 CREGRIIELLEALEAMAKD 392
EG ++++ + M ++
Sbjct: 404 -TEGNLVDMNNVKDLMVQN 421
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 99/239 (41%), Gaps = 8/239 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M +G+SP P ++ L+ + E AM L+ G P +L G
Sbjct: 393 MKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 452
Query: 155 ATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
E+ + E + + ++++ L + L+DA +F + G Y+
Sbjct: 453 YDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNA 512
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
+++ +AG AL M+ G + +N +L+ A G P+ A NM+ +
Sbjct: 513 LMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMK--Q 570
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+KPD +YN V+ A + A ++ + + + + D+ ++ TY+ ++E K
Sbjct: 571 SAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDY-----DLITYSSILEAIGK 624
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 10/199 (5%)
Query: 127 LKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVR 185
+R +G+ P T L F K + +L M++ + A+ L++ L +
Sbjct: 390 FERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 449
Query: 186 NKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFH 245
K + AN++F + ++ +Y +MI KAG +A+++ EM G +
Sbjct: 450 AKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYA 509
Query: 246 FNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
+N L+S A G+ + A T M+ + PD +YN ++ A + DR
Sbjct: 510 YNALMSGLARAGMLDEALTTMRRMQ--DHGCIPDINSYNIILNALAKTGGPDRA------ 561
Query: 306 LGMMVE-DHKRLQPNVKTY 323
+GM+ ++P+ +Y
Sbjct: 562 MGMLCNMKQSAIKPDAVSY 580
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 96/245 (39%), Gaps = 10/245 (4%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS--AGVRPLHETLIALARL 148
+ Y + A P +++ +++ G++E +H L E+S P T AL
Sbjct: 177 IFYQIKARKCQPTAHAYNSMIIMLMHEGEYE-KVHELYNEMSNEGQCFPDTVTYSALISA 235
Query: 149 FGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
F G + +L M+ + + +L+ L + + A +F R
Sbjct: 236 FCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPD 295
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y +I KAG A +EM G T N++++ G + A FE
Sbjct: 296 VFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFE 355
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
ME P TYN +I+A ES RV +++ M + P+ TY++L+
Sbjct: 356 EMETLR--CIPSVVTYNTIIKALF--ESKSRVSEISSWFERM--KGSGISPSPFTYSILI 409
Query: 328 ECFTK 332
+ F K
Sbjct: 410 DGFCK 414
>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 98/246 (39%), Gaps = 12/246 (4%)
Query: 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEIL 162
G F+ ++ AY G A S G+ P +L G + I
Sbjct: 106 GIHDFNLMIAAYGKLGQPGIAELSFTEMREVGLEPNVACFTSLLEAHARTGNFVRAESIY 165
Query: 163 AAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVF-LRGAKGGLRATDEIYDLMIAEDCK 220
M K + + + L + + DA ++F + +Y+LM+ K
Sbjct: 166 QEMLKTGPAPTEVTYQVYINALCKAERFNDAERIFKCLDESAEAKPDARLYNLMLHTYGK 225
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
AG S + +M+ AG T FN L++ Q T E A +M+ + +KPD
Sbjct: 226 AGKFSEQQALFRQMKGAGVPMTVVTFNSLMAFQKTVADAE---ACLRHMQAAK--IKPDV 280
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
TY +I AY++A RV++ + MV L+P+ Y L++ + K V A
Sbjct: 281 ITYTGLINAYSKAR---RVEEAHVVFREMVASG--LRPSRIAYNTLLDAYAKCKEVEGAE 335
Query: 341 RHFRAL 346
F+++
Sbjct: 336 SLFKSM 341
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 107/280 (38%), Gaps = 16/280 (5%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSF----HGLVVAYTLNGDHEGAMHSL 127
F L HAR + R + +M+ G +P ++ + L A N D E L
Sbjct: 145 FTSLLEAHARTGNFVRAESIYQEMLKTGPAPTEVTYQVYINALCKAERFN-DAERIFKCL 203
Query: 128 KRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNK 187
SA +P + +G G ++ + M+ + + + K
Sbjct: 204 DE--SAEAKPDARLYNLMLHTYGKAGKFSEQQALFRQMK--GAGVPMTVVTFNSLMAFQK 259
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFN 247
+ DA ++ Y +I KA A + EM A+G + +N
Sbjct: 260 TVADAEACLRHMQAAKIKPDVITYTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYN 319
Query: 248 HLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLG 307
LL A C E A + F++M G+D +PD +Y ++ AY + + + LL
Sbjct: 320 TLLDAYAKCKEVEGAESLFKSM--GQDRCRPDIRSYTTLLAAYANTGNMKKAE---RLLK 374
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
M L+PNV TY L++ +T + ++ F LQ
Sbjct: 375 RM--KQAGLEPNVVTYGTLMQGYTSVHDINAMLQTFEDLQ 412
>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 624
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 133/311 (42%), Gaps = 24/311 (7%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ +G+ S +V G+ E + +K G++P T + + K
Sbjct: 215 MVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAY-VKQR 273
Query: 155 ATKGLE-ILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
G+E +L M+K + Y+ + + +L+E V+N + DA K+F + G+ + +Y
Sbjct: 274 DFSGVEGVLKVMKKDGVVYN-KVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVY 332
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+I+ +C+ G+ A + E+ G +++ + L+ C + E+ A E
Sbjct: 333 TSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALI--DGVCKVGEMGAAEILMNEM 390
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ +N +I Y R D + +++ + K Q +V T + CF
Sbjct: 391 QSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVM-----EQKGFQADVFTCNTIASCFN 445
Query: 332 KYCAVTEAIR-HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
+ EA + FR + EGG K+ + ++ + + +Y C+EG + E M+
Sbjct: 446 RLKRYDEAKQWLFRMM---EGGVKL--STVSYTNLIDVY----CKEGNVEEAKRLFVEMS 496
Query: 391 KDNQPVPPRAM 401
++ V P A+
Sbjct: 497 --SKGVQPNAI 505
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 16/259 (6%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL-SAGVRP 137
+ R + R + ++ GLSP ++ L+ G+ GA L E+ S GV
Sbjct: 339 NCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEM-GAAEILMNEMQSKGVNI 397
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELV----RNKYLEDAN 193
L + KG+ + I ME+ + QA + + R K ++A
Sbjct: 398 TQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGF---QADVFTCNTIASCFNRLKRYDEAK 454
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
+ R +GG++ + Y +I CK G+ A + EM + G +N ++
Sbjct: 455 QWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAY 514
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
G + A NME + M PD+ TY +I A++ D + +G+
Sbjct: 515 CKQGKIKEARKLRANME--ANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGL----- 567
Query: 314 KRLQPNVKTYALLVECFTK 332
K L N TY +++ +K
Sbjct: 568 KGLDQNSVTYTVMISGLSK 586
>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
Length = 634
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 117/299 (39%), Gaps = 41/299 (13%)
Query: 128 KRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME-KINYDIRQAWLILVEELVRN 186
K GV + L+ALA+ +GL + ++ M + + D+R ++ L+
Sbjct: 290 KNGFDDGVESFNCLLVALAK----EGLGREARQVFDKMHGQYSPDLR-SYTALMLAWCNA 344
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+ L +A +V+ + G+ +++ MI + A+++ M+A G + +
Sbjct: 345 RNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTY 404
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
L+ G ++A FE M+ E +PD TY C++ Y A+ DRV V E +
Sbjct: 405 TMLIRDHCKQGKMDMAMECFEEMQ--EAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEM 462
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL-------------------- 346
K P+ +TY L++ T +A R ++ +
Sbjct: 463 -----TQKGCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYF 517
Query: 347 ---QNYEGGTKV---LHNEGNFGD--PLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
NY G V +H G D ++++ R GR E + +E M P
Sbjct: 518 VGDSNYAMGCAVWEEMHQRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMKAP 576
>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
Length = 852
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Query: 169 NYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
NY R + +++ R+ ++ A +F K + E Y+ +I +AG A
Sbjct: 157 NYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWA 216
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
+ I +M A + +N+L++ + G + A + M E+ + PD T+N V+
Sbjct: 217 MNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMT--ENGVGPDLVTHNIVL 274
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
AY R Y +V EL+ ++P+ T +++ C K +AI F +++
Sbjct: 275 SAYKRGNQYSKVLSYFELM-----KGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMK 329
Score = 43.9 bits (102), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 88/246 (35%), Gaps = 41/246 (16%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+A GL P S++ L+ AY +G + A G P + +L +G G
Sbjct: 365 MLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGK 424
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
K +++ M + + LV L DA G+KG L EI
Sbjct: 425 PEKAMKVFELMRRNHCK---------PNLVSYNALIDA-----YGSKGLLTEAVEI---- 466
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
+ E + G N + I + A GR +LS GI
Sbjct: 467 LHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGI---------------- 510
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
K +T YN I +Y YD+ + + K+++P+ TY +L+ K
Sbjct: 511 --KLNTTAYNSAIGSYLSVGEYDKALSLYRAM-----RTKKVKPDPVTYNVLISGCCKMS 563
Query: 335 AVTEAI 340
EA+
Sbjct: 564 KYGEAL 569
>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
Length = 796
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 9/163 (5%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L + +++A KV G+ Y++MI CKA A+++ +M G
Sbjct: 463 LIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRG 522
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
F FN L G E + M+ + +KPD TY +I Y +A+ +
Sbjct: 523 FKPDLFTFNIFLHTYCNLGKVEEILHLLDQMK--SEGLKPDIVTYGTIIDGYCKAKDMHK 580
Query: 299 VQD-VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
+ + EL+ L+PN Y L+ + + +++AI
Sbjct: 581 ANEYLTELM------KNGLRPNAVIYNALIGGYGRNGNISDAI 617
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 94/256 (36%), Gaps = 53/256 (20%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DMI G P +F+ + Y G E +H L + S G++P
Sbjct: 517 DMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKP---------------- 560
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ + Y +++ + K + AN+ K GLR IY+
Sbjct: 561 ------------DIVTYGT------IIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNA 602
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF-----EN 268
+I + G+ S+A+ I M+ G T +N L+ G+ E A F ++
Sbjct: 603 LIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKD 662
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR-LQPNVKTYALLV 327
+E G Y +IQ + + D E + E H R + PN TY L+
Sbjct: 663 IELG-------VIGYTIIIQGFCKIGKID------EAVMYFKEMHSRGIPPNKMTYTTLM 709
Query: 328 ECFTKYCAVTEAIRHF 343
++K EA + F
Sbjct: 710 FAYSKSGNKEEASKLF 725
Score = 39.7 bits (91), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 24/223 (10%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M + GL P ++ ++ Y D A L + G+RP AL +G G
Sbjct: 553 MKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGN 612
Query: 155 ATKGLEILAAME-------KINYDIRQAWLI---LVEELVRNKYLEDANKVFLRGAKGGL 204
+ + IL M+ + Y+ W+ LVEE V+ + + K G G
Sbjct: 613 ISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEE-VKAVFAQCIVKDIELGVIG-- 669
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
Y ++I CK G A+ EM + G + L+ + G E A
Sbjct: 670 ------YTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASK 723
Query: 265 TFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDR-VQDVAEL 305
F+ M G + PD+ +YN +I + +S D+ V+ AE+
Sbjct: 724 LFDEMVSLG---IVPDSVSYNTLISGFCEVDSLDKMVESPAEM 763
Score = 39.7 bits (91), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 7/216 (3%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
+ + +D + N+ + +++ GL P ++ L+ Y NG+ A+ L G++P
Sbjct: 572 YCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPT 631
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ---AWLILVEELVRNKYLEDANKV 195
T +L GL + + A + I DI + I+++ + +++A
Sbjct: 632 PVTYNSLMYWMCHAGLVEEVKAVFA--QCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMY 689
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
F G+ Y ++ K+G+ A ++ EM + G + + +N L+S
Sbjct: 690 FKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLIS--GF 747
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYT 291
C + + E +K D +YN + T
Sbjct: 748 CEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVDGIT 783
>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Vitis vinifera]
Length = 848
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Query: 169 NYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
NY R + +++ R+ ++ A +F K + E Y+ +I +AG A
Sbjct: 157 NYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWA 216
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
+ I +M A + +N+L++ + G + A + M E+ + PD T+N V+
Sbjct: 217 MNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMT--ENGVGPDLVTHNIVL 274
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
AY R Y +V EL+ ++P+ T +++ C K +AI F +++
Sbjct: 275 SAYKRGNQYSKVLSYFELM-----KGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMK 329
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 88/246 (35%), Gaps = 41/246 (16%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+A GL P S++ L+ AY +G + A G P + +L +G G
Sbjct: 365 MLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGK 424
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
K +++ M + + LV L DA G+KG L EI
Sbjct: 425 PEKAMKVFELMRRNHCK---------PNLVSYNALIDA-----YGSKGLLTEAVEI---- 466
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
+ E + G N + I + A GR +LS GI
Sbjct: 467 LHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGI---------------- 510
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
K +T YN I +Y YD+ + + K+++P+ TY +L+ K
Sbjct: 511 --KLNTTAYNSAIGSYLSVGEYDKALSLYRAM-----RTKKVKPDPVTYNVLISGCCKMS 563
Query: 335 AVTEAI 340
EA+
Sbjct: 564 KYGEAL 569
>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
Length = 564
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 144/347 (41%), Gaps = 37/347 (10%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI---ALARLFGSKGLA 155
G+ P + LV A++ + +L ++AG P +T+I + LF K +
Sbjct: 215 GVPPQLDAVADLVAAFSAAANFGKVSETLHLMIAAGSVP--DTVIYQRIIHGLFAHK-MG 271
Query: 156 TKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
++ L + ++ Y++ + ++ L + +++A +++ G+ + Y +
Sbjct: 272 SEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSL 331
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
+A CKAGD A ++ EM G +T N L++ T G + A FE M +
Sbjct: 332 VAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMV--KK 389
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
++ D TYN +IQ +A V E L L+P+V T+ L++ +
Sbjct: 390 GIEHDVITYNILIQGLCKAGRLSEAIQVYEQL-----LSSGLEPSVSTFTPLIDTMCEEG 444
Query: 335 AVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLS----LYLRALCREGRIIELLEALEAMA 390
V A+ KV+H +G +PL+ + C+ R + + L M
Sbjct: 445 QVDAAVELL----------KVMHAKGL--EPLARINDSIINGFCKARRPEDGMAWLAGML 492
Query: 391 KDNQPVPPRAMILSRKYRTLVSSW-----IEPLQEEAELGYEIDYIA 432
K N + PR + L SS + L ++G+E+ +A
Sbjct: 493 KKN--LKPREHTFNSLVELLSSSGRVDDALLVLNTMFKIGHELGSLA 537
>gi|297736801|emb|CBI26002.3| unnamed protein product [Vitis vinifera]
Length = 469
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 45/206 (21%)
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLED 191
S +P T+ + LFG+KG +I + W E RN +E
Sbjct: 279 STSSKPDVWTMNTILSLFGNKG---------------QIEIMEKWY----EKFRNFGIEP 319
Query: 192 ANKVF--LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+ F L GA G R D++ +M ++ L+ + TT +N++
Sbjct: 320 ETRTFNILIGAYGKKRMYDKMSSVM--------EYMRKLQFPW---------TTSTYNNV 362
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL---L 306
+ + G + TF+ M + MK DT+T+ C+I+ Y A + + +D+ E+
Sbjct: 363 IEAFSDVGDAKNMEYTFDQMR--AEGMKADTKTFCCLIRGYANAGLFHKAEDLIEMERVF 420
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTK 332
M + H QP+ TY+++VE + K
Sbjct: 421 NRMKDKH--CQPDSTTYSIMVEAYKK 444
>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 711
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 43/251 (17%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ +M G+SP ++ L+ AY G E A LK + V+P L +
Sbjct: 363 MVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYR 422
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+G K ++L M+ I RQ + ++++ + L+ A F R G+
Sbjct: 423 DRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRV 482
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ +I CK G H A E+ ME G +
Sbjct: 483 TWNTLIDCHCKHGRHIVAEEMFEAMERRGCL----------------------------- 513
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
P TYN +I +Y E +D D+ LLG M + + PNV T+ LV+
Sbjct: 514 --------PCATTYNIMINSYGDQERWD---DMKRLLGKM--KSQGILPNVVTHTTLVDV 560
Query: 330 FTKYCAVTEAI 340
+ K +AI
Sbjct: 561 YGKSGRFNDAI 571
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 100/239 (41%), Gaps = 8/239 (3%)
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
+++ + +GD A+ L + G+ TL+++ + G + + + +
Sbjct: 277 IIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEELRQSG 336
Query: 170 YDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228
R +A+ L++ V+ L+DA + K G+ + Y L+I AG +A
Sbjct: 337 IKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESAR 396
Query: 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288
+ EME +F F+ LL+ G + F + M+ +KPD + YN VI
Sbjct: 397 IVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMK--SIGVKPDRQFYNVVID 454
Query: 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ + D + M+ E ++P+ T+ L++C K+ A F A++
Sbjct: 455 TFGKFNCLDHAMTTFD--RMLSEG---IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAME 508
Score = 46.6 bits (109), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 104/248 (41%), Gaps = 18/248 (7%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVV-AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
V+ +M + G+ P R F+ +V+ + + AM + R LS G+ P T L
Sbjct: 433 VLKEMKSIGVKPD-RQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 491
Query: 150 GSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G E+ AME+ + I++ + +D ++ + G+
Sbjct: 492 CKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 551
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+ ++ K+G ++A+E EM++ G ++ +N L++ A G+ E A F
Sbjct: 552 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 611
Query: 269 MEYGEDYMKPDTETYNCVIQAYTR----AESYDRVQDVAELLGMMVEDHKRLQPNVKTYA 324
M D +KP N +I A+ AE++ +Q + E ++P+V TY
Sbjct: 612 MT--SDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKE---------NGVKPDVVTYT 660
Query: 325 LLVECFTK 332
L++ +
Sbjct: 661 TLMKALIR 668
>gi|357128684|ref|XP_003566000.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49240-like [Brachypodium distachyon]
Length = 683
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME---AAGRMATTFHFNHLLSCQATC 256
A G + ++Y+L++A +AGD + A+E+ E+E + + L+
Sbjct: 206 ASGFVGPDPQVYNLLMAGFVQAGDGAKAVELYQELEHKVGDEMILDGIVYGSLMKAYFLM 265
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK-- 314
G+ E A ++ + E ++ TE+YN V+ A + R++D EL M+ +H
Sbjct: 266 GMEEKAMECYKEVIGAESEVRFGTESYNEVVDALGQN---GRLEDALELFDRMLGEHNPP 322
Query: 315 -RLQPNVKTYALLVECFTKYCAVTEAIRHFR 344
R+ NV++++++V+ ++ +AI FR
Sbjct: 323 LRIVVNVRSFSVMVDAYSAAGRFEDAIAVFR 353
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 3/204 (1%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M +G+SP P ++ L+ + E AM L+ G P +L G
Sbjct: 393 MKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 452
Query: 155 ATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
E+ + E + + ++++ L + L+DA +F K G Y+
Sbjct: 453 YDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNA 512
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
+++ +AG AL M+ G + +N +L+ A G P A NM+ +
Sbjct: 513 LMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMK--Q 570
Query: 274 DYMKPDTETYNCVIQAYTRAESYD 297
+KPD +YN V+ A + A ++
Sbjct: 571 SAIKPDAVSYNTVLGAMSHAGLFE 594
>gi|356565780|ref|XP_003551115.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Glycine max]
Length = 622
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 107/264 (40%), Gaps = 24/264 (9%)
Query: 77 MQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVR 136
+ +A+N +V +I +M GL P R+ ++ Y G A+ + R G++
Sbjct: 314 ISYAQNGKTVQVEAMILEMRRNGLKPNDRTCTIIISGYCREGKVREALRFVYRIKDLGLQ 373
Query: 137 PLHETLIALARLFGSKGLATKGLEILAAMEK-------INYD-IRQAWLILVEELVRNKY 188
P L +L F E+L ME+ I Y I AW + +
Sbjct: 374 PNLIILNSLVNGFVDTMDRDGVNEVLNLMEEFYIRPDVITYSTIMNAW-------SQAGF 426
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
LE +++ K G++ Y ++ +A + A E+ M +G F
Sbjct: 427 LEKCKEIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEELLTVMTKSGVQPNVVIFTT 486
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
++S + G + A F+ M GE + P+ +T+ +I Y A+ + + +L +
Sbjct: 487 VMSGWCSVGRMDNAMRVFDKM--GEFGVSPNLKTFETLIWGYAEAKQPWKAEG---MLQI 541
Query: 309 MVEDHKRLQPNVKTYALLVE--CF 330
M E H +QP T L+ E CF
Sbjct: 542 MEEFH--VQPKKSTILLVAEAWCF 563
>gi|356562139|ref|XP_003549331.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 689
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 7/246 (2%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P ++ ++ AY G+ + A+ R + R T L +++G G L +
Sbjct: 234 PDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDSVTFSTLIKMYGLAGNYDGCLNV 293
Query: 162 LAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220
M+ + + L++ + R K A ++ G Y ++ +
Sbjct: 294 YQEMKALGVKSNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLPNWATYASLLRAYGR 353
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
+AL + EM+ G T +N LL+ A G+ + AF FE+M+ + D+
Sbjct: 354 GRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLADDAFKIFEDMKSSATCL-CDS 412
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
T++ +I Y+ + + V + +L M+E QP + LV+C+ K + +
Sbjct: 413 WTFSSLITIYSCSGN---VSEAERMLNEMIESG--FQPTIFVLTSLVQCYGKVGRTDDVL 467
Query: 341 RHFRAL 346
+ F L
Sbjct: 468 KTFNQL 473
>gi|414590862|tpg|DAA41433.1| TPA: hypothetical protein ZEAMMB73_769800 [Zea mays]
Length = 1295
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 12/200 (6%)
Query: 144 ALARLFGSKGLATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
A+ F +G K +E+ M+K Y D+ ++ ILV+ L + L + A+
Sbjct: 942 AVIHGFCCEGQVDKAIEVFHGMKKCGYVPDV-HSYSILVDGLCKQGDLLKGYDMLEEMAR 1000
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL-SCQATCGIPE 260
G+ Y ++ CK G + AL+I ++ G +++ +L C +
Sbjct: 1001 NGICPNQVSYSSLLHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIILHGCCQHLDLKA 1060
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
++ F+ + + + PD Y +I A R + +QD + +M+E+ L PN+
Sbjct: 1061 ISDLWFDMIHHN---IAPDVYNYTSLIYALCR---HRNLQDALGVFELMLEN--GLSPNI 1112
Query: 321 KTYALLVECFTKYCAVTEAI 340
T +LV+ F+K V EA
Sbjct: 1113 VTCTILVDSFSKQGLVGEAF 1132
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 7/166 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
++ +L+ L ++ + A + G+RA Y +I C A + A+E+ EM
Sbjct: 117 SYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEM 176
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+G ++ LL G E F +E E ++PD Y +I + +
Sbjct: 177 CESGIEPNVVVYSSLLQGYCKSGRWEDVGKVF--VEMSEKGIEPDVVMYTGLIDSLCKVG 234
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
+ V + MMV + L+PNV TY +L+ C K +V EAI
Sbjct: 235 KAKKAHGVMD---MMV--RRGLEPNVVTYNVLINCMCKEGSVKEAI 275
Score = 46.2 bits (108), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 93/228 (40%), Gaps = 6/228 (2%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEI 161
P S+ L+ A + + A+ L+ SAGVR T L R K +E+
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172
Query: 162 LAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220
+ M + + + L++ ++ ED KVF+ ++ G+ +Y +I CK
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDT 280
G A + M G +N L++C G + A + M E + PD
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMS--EKGVAPDV 290
Query: 281 ETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
TYN +I+ + D + LL MV ++PNV T+ +++
Sbjct: 291 VTYNTLIKGLSDVLEMD---EAMWLLEEMVRGKNIVKPNVVTFNSVIQ 335
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 91/225 (40%), Gaps = 48/225 (21%)
Query: 85 APRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHET 141
A + + V+ M+ GL P +++ L+ G + A+ LK+ GV P + T
Sbjct: 236 AKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNT 295
Query: 142 LIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
LI KGL+ LE+ AM WL+ EE+VR K + N V
Sbjct: 296 LI--------KGLSDV-LEMDEAM----------WLL--EEMVRGKNIVKPNVVTFNSVI 334
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
GL C G A ++ ME G M +N L+ G+ V
Sbjct: 335 QGL--------------CDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIG-----GLLRV 375
Query: 262 AFATFENMEYGEDY----MKPDTETYNCVIQAYTRAESYDRVQDV 302
+ ME ++ ++PD+ TY+ +I+ + + DR +D+
Sbjct: 376 -HKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDL 419
Score = 40.8 bits (94), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 21/157 (13%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ L + + A+ V + GL Y+++I CK G A+ + +M G
Sbjct: 226 LIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKG 285
Query: 239 RMATTFHFNHLLSCQATCGIPEV-----AFATFENMEYGEDYMKPDTETYNCVIQAYT-- 291
+N L+ G+ +V A E M G++ +KP+ T+N VIQ
Sbjct: 286 VAPDVVTYNTLIK-----GLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDI 340
Query: 292 -RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
R +V+ + E G MV N+ TY LL+
Sbjct: 341 GRMRQAFQVRAMMEETGCMV--------NLVTYNLLI 369
>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 459
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 88/224 (39%), Gaps = 10/224 (4%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
++ L+ A NG+ GA L+R GV P T L + + G + L M
Sbjct: 185 YNALLDALCANGNFAGAYKLLRRMARKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMA 244
Query: 167 KINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
+ +R L LV+ LVR LE+A LR K G+ ++ + C AGD
Sbjct: 245 TRGFRPPVRGRDL-LVDGLVRAGRLEEAKAFALRITKEGVLPDVATFNSLAQALCDAGDV 303
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
A+ + + + G + +L A G E AF F ED +P Y
Sbjct: 304 EFAVGLLADASSRGMCPDISTYKVMLPAVAKAGRIEEAFRLFYAAI--EDGHRPFPSLYA 361
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+++A +A R D G M K PN Y +LV+
Sbjct: 362 AIVKALCKA---GRFADAFAFFGDM--KSKGHPPNRPVYVMLVK 400
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 97/257 (37%), Gaps = 18/257 (7%)
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLRG 199
T A+ +G LA + +E+ + + + L++ L N A K+ R
Sbjct: 149 TFSAVISSYGHSRLAEQAVEVFNRLPHFGCPQTTEVYNALLDALCANGNFAGAYKLLRRM 208
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIP 259
A+ G+ + ++ C +G A +M G + L+ G
Sbjct: 209 ARKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMATRGFRPPVRGRDLLVDGLVRAGRL 268
Query: 260 EVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR-LQP 318
E A A + ++ + PD T+N + QA A DV +G++ + R + P
Sbjct: 269 EEAKAF--ALRITKEGVLPDVATFNSLAQALCDA------GDVEFAVGLLADASSRGMCP 320
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
++ TY +++ K + EA R F A E G + F + ++ALC+ GR
Sbjct: 321 DISTYKVMLPAVAKAGRIEEAFRLFYA--AIEDGHR------PFPSLYAAIVKALCKAGR 372
Query: 379 IIELLEALEAMAKDNQP 395
+ M P
Sbjct: 373 FADAFAFFGDMKSKGHP 389
>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
Length = 649
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 70/352 (19%), Positives = 132/352 (37%), Gaps = 81/352 (23%)
Query: 102 PGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALARLFGSKGLATKG 158
P +F + ++ NG + A+ L + G P ++ TLI F +G +
Sbjct: 223 PNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLI---NGFSEQGHVDQA 279
Query: 159 LEILAAM----EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
L++L M + Y+ L + E ED ++ + G + + ++
Sbjct: 280 LDLLNTMLCKPNTVCYNAALKGLCIAERW------EDIGELMAEMVRKGCSPNEATFSML 333
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I+ C+ +A+E+ +ME G T ++N +++ + G + A +M
Sbjct: 334 ISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM----- 388
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED---------------------- 312
KPD +N V++ + RAE R D +EL+ M D
Sbjct: 389 VCKPDALGFNAVLKGFCRAE---RWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLV 445
Query: 313 -----------HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ------NYEGGTKV 355
R P++ TY+ L+ F++ V AI+ FR++ +Y K
Sbjct: 446 NYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFSYNAVLKG 505
Query: 356 LHNEGNFGDP------------------LSLYLRALCREGRIIELLEALEAM 389
L + D ++ + +LC++G + +E LE M
Sbjct: 506 LCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQM 557
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 12/218 (5%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
+F+ L+ NG A ++ P T +L F +GL +++ +M
Sbjct: 431 TFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSM 490
Query: 166 EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
DI ++ +++ L R EDA ++ + ++++I C+ G
Sbjct: 491 -PCKPDIF-SYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVD 548
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
A+E+ +M G F +N L++ + G + A M KPD +YN
Sbjct: 549 RAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMS-----CKPDAISYNS 603
Query: 286 VIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
++ RAE R QD EL+ M+ + + PN T+
Sbjct: 604 TLKGLCRAE---RWQDAEELVAEMLRN--KCTPNEVTF 636
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 8/239 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M +G+SP P ++ L+ + E AM L+ G P +L G
Sbjct: 397 MKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 456
Query: 155 ATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
E+ + E + + ++++ L + L+DA +F +K G Y+
Sbjct: 457 YDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNA 516
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
+++ +A AL +M+ G + +N +L+ A G P A NM+
Sbjct: 517 LMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMK--N 574
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+KPD +YN V+ A + A + ++ AEL+ M + + ++ TY+ ++E K
Sbjct: 575 STIKPDAVSYNTVLSALSHAGMF---EEAAELMKEM--NALGFEYDLITYSSILEAIGK 628
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 10/245 (4%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS--AGVRPLHETLIALARL 148
+ Y + A P ++++ +++ G +E +H L E+S +P T AL
Sbjct: 181 IFYQIKARKCQPTAQAYNSMIIMLIHEGQYE-KVHELYNEMSNEGHCQPDTVTYSALISA 239
Query: 149 FGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
F G + +L M++ + + +++ + + A +F R
Sbjct: 240 FCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPD 299
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y +I KAG A +EM+ G T N++++ G + FE
Sbjct: 300 VFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFE 359
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M G + P+ TYN +I+A ES RV +V M + P+ TY++L+
Sbjct: 360 EM--GVSHCIPNVVTYNTIIKALF--ESKSRVSEVFSWFERM--KGSGISPSPFTYSILI 413
Query: 328 ECFTK 332
+ F K
Sbjct: 414 DGFCK 418
>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 511
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 22/227 (9%)
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR---QAWLILVEELVRNK 187
L G++P + L AL +G GL + M+ + D + + +L+ + +
Sbjct: 159 LFEGLKPTVDVLTALVSAYGQSGLFRHAFSTIEDMKSV-VDCKPDVYTYSVLISCCAKFR 217
Query: 188 YLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAG---DHSNALEIAYEMEAAGRMATTF 244
+ +V + G+ Y+ +I KAG N+L E E F
Sbjct: 218 RFDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQMENSLTDMIENENC--QPDVF 275
Query: 245 HFNHLLSCQATCGI---PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
N L+ G E + F+ M +KPD +T+N +I++Y +A YD+++
Sbjct: 276 TLNSLIGSYGNGGKIDKMEKWYDEFQLMS-----IKPDIKTFNMMIKSYGKAGMYDKMKS 330
Query: 302 VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
V + + + + P + TY ++E + K + + +HF+ +++
Sbjct: 331 VMDFM-----ERRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKH 372
>gi|242050034|ref|XP_002462761.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
gi|241926138|gb|EER99282.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
Length = 535
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 39/241 (16%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +M +G+ P ++ ++ A G A L + + +G P T A+ R
Sbjct: 262 VFAEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRAHV 321
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
G + + L++ M ++ + +++ +L + + +G L A ++
Sbjct: 322 KAGRSEQVLQVHNQMHQLRCE---------PDIITYNFLIETH---CGKGQGNLDAALKV 369
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
D MIA+ C H+ FN + G A +E M
Sbjct: 370 LDKMIAKKCVPDCHT--------------------FNPMFRLLVVLGNIGAAHKLYEKMR 409
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E KP+ TYNC+++ + + +S D V + + M VE ++PN+ TYA L+E F
Sbjct: 410 --ELQCKPNVVTYNCLLKLFNKEKSMDMVLRMKK--NMDVEG---IEPNMHTYAALIEAF 462
Query: 331 T 331
Sbjct: 463 C 463
Score = 39.7 bits (91), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFEN 268
+Y ++ C+AG A + EM+ +G M + + ++ G +P +
Sbjct: 242 LYTAVVHAWCRAGQLDEAERVFAEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQM 301
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
++ G P+T T+N +++A+ +A ++V V + + R +P++ TY L+E
Sbjct: 302 IDSG---CPPNTATFNAIMRAHVKAGRSEQVLQVHNQMHQL-----RCEPDIITYNFLIE 353
>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
Length = 637
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 119/299 (39%), Gaps = 41/299 (13%)
Query: 128 KRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRN 186
K GV + L+ALA ++GL + ++ M + + D+R ++ L+
Sbjct: 288 KNGFDDGVESFNCLLVALA----NEGLGREARQVFDKMLGQYSPDLR-SYTALMLAWCNA 342
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+ L +A +V+ + G++ +++ MI + A+++ M+A G + +
Sbjct: 343 RNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWTY 402
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
L+ G ++A FE M+ E +PD TY C++ Y A+ DRV V E +
Sbjct: 403 TMLICNHCKRGKMDMAMECFEEMQ--EARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEM 460
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL-------------------- 346
K P+ +TY L++ T +A R ++ +
Sbjct: 461 -----TQKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMKSYF 515
Query: 347 ---QNYEGGTKV---LHNEGNFGD--PLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
+NY G V +H G D ++++ R GR E + +E M P
Sbjct: 516 LGDRNYAMGCAVWEEMHRRGICPDVNSYTVFISGHIRHGRPEEAYKYIEEMINKGMKAP 574
>gi|297790207|ref|XP_002863007.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297308804|gb|EFH39266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 842
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 112/281 (39%), Gaps = 9/281 (3%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H +N D R +M AGL P P S+ L+ A+++ + A + V
Sbjct: 377 HTKNNDIERAGTYFKEMKGAGLKPDPVSYRTLLYAFSIRRMVKEAEELIAEMDDNDVEID 436
Query: 139 HETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
T AL R++ + K + + + ++ YL +A +VF+
Sbjct: 437 EYTQSALTRMYIEAEMLEKSWSWFRRVHVAGNMSSEGYSANIDAYGERGYLSEAERVFIC 496
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+ R E Y++MI + A E+ M + G +N L+ A+ +
Sbjct: 497 CQEVNKRTVLE-YNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADM 555
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
P+ A E M E D Y VI ++ + + ++V + MVE + ++P
Sbjct: 556 PDKAKCYLEKMR--ETGYVSDCIPYCAVISSFVKLGQLNMAEEVYK---EMVEYN--IEP 608
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYE-GGTKVLHN 358
+V Y +L+ F V +A+ + A++ G V++N
Sbjct: 609 DVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYN 649
>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 908
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 110/299 (36%), Gaps = 51/299 (17%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+MI G P + GL+ G EGA L + GV P LF
Sbjct: 320 EMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVP---------NLF---- 366
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ ++ L + LE+A +F A+ GL D Y +
Sbjct: 367 ---------------------VYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTI 405
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
+I + A +M G AT + +N +++CQ G ++A F+ M +
Sbjct: 406 LIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMV--D 463
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVA-ELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+KP TY +I Y + + + E+ G K + PN T+ L+ +
Sbjct: 464 KGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTG------KGIAPNTVTFTALICGLCQ 517
Query: 333 YCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAK 391
+ EA + F + K+L NE + ++ + CREG E L+ M K
Sbjct: 518 INKMAEASKLFDEMVE----LKILPNEVTY----NVLIEGHCREGNTTRAFELLDEMIK 568
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 19/190 (10%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GL+ T Y +I+ CK G A ++ +EM G T F L+ C I ++A
Sbjct: 465 GLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALIC--GLCQINKMA 522
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
A+ E E + P+ TYN +I+ + R + R ELL M++ K L P+ T
Sbjct: 523 EASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTR---AFELLDEMIK--KGLSPDTYT 577
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPL--SLYLRALCREGRII 380
Y L+ V+EA + F LH++ D L + L+ C+EGRI
Sbjct: 578 YRPLIAGLCSTGRVSEA-KEF---------INDLHHKHQRLDELCYTALLQGFCKEGRIK 627
Query: 381 ELLEALEAMA 390
E L A + M
Sbjct: 628 EALVARQEMV 637
Score = 39.7 bits (91), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 105/263 (39%), Gaps = 21/263 (7%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPL 138
H R + R +++ +MI GLSP ++ L+ G A +E +
Sbjct: 550 HCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEA-----KEFINDLHHK 604
Query: 139 HETLIALARLFGSKGLATKGL--EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF 196
H+ L L +G +G E L A +++ Q L+ L+ ++ +F
Sbjct: 605 HQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRILF 664
Query: 197 --LRGAKG-GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
LR G G++ + IY ++I K+G+ A E Y M G + + + L++
Sbjct: 665 ELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGL 724
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDH 313
G A F+ M GE P+ TY C + T+ +++ +L M++
Sbjct: 725 FKAGYVNEAKLLFKRMLVGEAI--PNHITYGCFLDHLTKE---GNMENALQLHNAMLQGS 779
Query: 314 KRLQPNVKTYALLVECFTKYCAV 336
N TY +L+ YC +
Sbjct: 780 ---FANTVTYNILIR---GYCQI 796
>gi|115447573|ref|NP_001047566.1| Os02g0644600 [Oryza sativa Japonica Group]
gi|49387609|dbj|BAD25805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|49388661|dbj|BAD25796.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537097|dbj|BAF09480.1| Os02g0644600 [Oryza sativa Japonica Group]
Length = 526
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 7/144 (4%)
Query: 196 FLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQAT 255
FL+ GL IY++ + CK G+ + A+++ EM+ G H+ L++
Sbjct: 93 FLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCL 152
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
G + A FE M ++PD TYN + + ++ V +V +LL M DH
Sbjct: 153 KGEMQNAQQVFEEMLKAN--IEPDIVTYNILASGFCKS---GLVMEVFDLLDRMA-DHG- 205
Query: 316 LQPNVKTYALLVECFTKYCAVTEA 339
L+PN TY + + F + ++EA
Sbjct: 206 LEPNSLTYGIAIVGFCRGGNLSEA 229
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 102/259 (39%), Gaps = 8/259 (3%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D++ + G++P ++ L+ + +G + A G+ P T L F
Sbjct: 341 DLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSF 400
Query: 150 GSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+G L L M ++ + L+ + L A +F GL+
Sbjct: 401 CKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNV 460
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
IY +I+ CK G+ NA + +EM G T+ F L+S C +A A
Sbjct: 461 VIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALIS--GLCHANRMAEANKLF 518
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
E E + P+ TYN +I+ + + + R ELL MVE K L P+ TY L+
Sbjct: 519 GEMVEWNVIPNEVTYNVLIEGHCKEGNTVR---AFELLDEMVE--KGLVPDTYTYRPLIS 573
Query: 329 CFTKYCAVTEAIRHFRALQ 347
V+EA LQ
Sbjct: 574 GLCSTGRVSEAREFMNDLQ 592
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 111/305 (36%), Gaps = 60/305 (19%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+MIA GL P + L+ Y G+ A G+ P T AL
Sbjct: 450 EMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTAL-------- 501
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ L + +ANK+F + + + Y++
Sbjct: 502 --------------------------ISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT-FENMEYG 272
+I CK G+ A E+ EM G + T+ + L+S C V+ A F N G
Sbjct: 536 LIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLIS--GLCSTGRVSEAREFMNDLQG 593
Query: 273 E-------DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
E + P+ TY +I + D+ AELL + L PN TYA
Sbjct: 594 EQQKLNEIEGCLPNVVTYTALINGLCKIGLMDK----AELLCREMLASNSL-PNQNTYAC 648
Query: 326 LVECFTKYCAVTEAIR-HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLE 384
++ T + +AI+ H L+ + T V +N + +R C+ GRI E E
Sbjct: 649 FLDYLTSEGNIEKAIQLHDVLLEGFLANT-VTYN---------ILIRGFCKLGRIQEAAE 698
Query: 385 ALEAM 389
L M
Sbjct: 699 VLVNM 703
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 10/196 (5%)
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLE 160
SP ++ ++ NG+ E A+ + + AGV+P T L + +G +
Sbjct: 563 SPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQ 622
Query: 161 ILAAMEKINYDIRQAWLI-LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDC 219
I A + K+N + LV+ + +EDA +F R + +++ MI
Sbjct: 623 IHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSV----ALWNAMIVGLA 678
Query: 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME--YGEDYMK 277
+ G+ AL EM++ G F +LS + G+ A+ F++M+ YG ++
Sbjct: 679 QHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYG---VE 735
Query: 278 PDTETYNCVIQAYTRA 293
P+ E Y+C++ A +RA
Sbjct: 736 PEIEHYSCLVDALSRA 751
>gi|147789723|emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]
Length = 550
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE-VAFATFENM 269
Y ++I CK A+E+ +M G +N L++ G E A + +
Sbjct: 273 YTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLL 332
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+G M P+T TYN ++ + +D V ++ ++ M + P V TY +L+
Sbjct: 333 SHG---MGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNMTSQ-----PPTVVTYNILING 384
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
KY + AI F + ++ ++ + L ALC+EG + E L L ++
Sbjct: 385 LCKYGLLDRAINFFDQMVSHNCLPDII--------TYNTLLAALCKEGMVDEALHLLHSL 436
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 8/239 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M +G+SP P ++ L+ + E AM L+ G P +L G
Sbjct: 397 MKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKR 456
Query: 155 ATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
E+ + E + + ++++ L + L+DA +F +K G Y+
Sbjct: 457 YDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNA 516
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
+++ +A AL +M+ G + +N +L+ A G P A NM+
Sbjct: 517 LMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMK--N 574
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+KPD +YN V+ A + A + ++ AEL+ M + + ++ TY+ ++E K
Sbjct: 575 STIKPDAVSYNTVLSALSHAGMF---EEAAELMKEM--NALGFEYDLITYSSILEAIGK 628
>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g11690-like [Glycine max]
Length = 556
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 99/236 (41%), Gaps = 10/236 (4%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GLSP + L+ NGD A + + G+ P T L F +GL +G
Sbjct: 188 GLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREG 247
Query: 159 LEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
++ M + A+ L+ E + ++ A KVF + G+ Y+++I
Sbjct: 248 FQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGG 307
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
C+ A+++ +++ G +N L++ G + A F ++ +
Sbjct: 308 LCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLK--SSGLS 365
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK-TYALLVECFTK 332
P TYN +I Y+ +V+++A L ++ E +R K TY +L++ F +
Sbjct: 366 PTLVTYNTLIAGYS------KVENLAGALDLVKEMEERCIARSKVTYTILIDAFAR 415
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 78/197 (39%), Gaps = 8/197 (4%)
Query: 153 GLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
G + +LA +E+ + L++ +N + A +F + + GL Y
Sbjct: 172 GYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTY 231
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+++ K G ++ M +G + + +N L+S G+ + AF F M
Sbjct: 232 SVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMR- 290
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
E + TYN +I R + + + + + L PN+ TY +L+ F
Sbjct: 291 -EKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKV-----NKVGLSPNIVTYNILINGFC 344
Query: 332 KYCAVTEAIRHFRALQN 348
+ A+R F L++
Sbjct: 345 DVGKMDTAVRLFNQLKS 361
>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 755
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 17/222 (7%)
Query: 131 LSAGVRPLHETLIAL-ARLFGSKGLATKGLEILAAMEKINYDIR---QAWLILVEELVRN 186
LS G R L+ L++L R + S G KG E+L M+ +Y IR A+ + +++L +
Sbjct: 330 LSRG-RHLNAALLSLFIRKYCSDGYFDKGWELLMGMK--DYGIRPDIVAFTVFIDKLCKA 386
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+L +A V + G+ +I CK G A+++ + F +
Sbjct: 387 GFLREATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLR---PNIFVY 443
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
+ LS C ++ A+ E E + PD Y +I Y + R +
Sbjct: 444 SSFLS--NICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYC---TLGRTDKAFQFF 498
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
G +++ P++ TY LL+ +K+ ++++A FR ++
Sbjct: 499 GALLKSGN--PPSLITYTLLIGACSKFGSISDAESVFRIMKT 538
>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 575
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GL + Y+++++ C+ GD S A ++ EME G + + L+ A E A
Sbjct: 368 GLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETA 427
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ME E + PD TY+ +I + ++ + + L MVE K L+PN
Sbjct: 428 IQLRSSME--ELGLVPDVHTYSVLIHGFCIK---GQMNEASRLFKSMVE--KMLEPNEVI 480
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIEL 382
Y ++ + K + A+R FR ++ E V S +R LC+E ++ E
Sbjct: 481 YNTMILGYCKEGSSYRALRLFRDMEEKELAPNV--------ASYSYLIRVLCKERKLKEA 532
Query: 383 LEALEAM 389
+ +E M
Sbjct: 533 EDLVEKM 539
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
D+ + GLSP +++ LV + GD GA +K G++P T L F
Sbjct: 363 DLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422
Query: 154 LATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
+++ ++ME++ D+ + +L+ + +A+++F + L + IY
Sbjct: 423 NMETAIQLRSSMEELGLVPDV-HTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIY 481
Query: 212 DLMIAEDCKAGDHSNALEIAYEME 235
+ MI CK G AL + +ME
Sbjct: 482 NTMILGYCKEGSSYRALRLFRDME 505
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
G IY +I CK G+ A ++ +EM G +A + + L+ GI +
Sbjct: 193 GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQG 252
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F +E M+ E + P+ TYNCV+ + R +D ++ M E + + N+ T
Sbjct: 253 FEMYEKMQ--EHGVFPNLYTYNCVMNQLCKD---GRTKDAFKVFDEMRE--RGVSCNIVT 305
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNY 349
Y L+ + EA + +++Y
Sbjct: 306 YNTLIGGLCREMKANEANKVMDQMKSY 332
>gi|356499287|ref|XP_003518473.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71210-like [Glycine max]
Length = 872
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 19/224 (8%)
Query: 115 TLNGDHEGAMHSLKRELS---------AGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
T N +GA H++K EL+ G+ P +LI + + G + L +
Sbjct: 603 TYNFFLDGAGHAMKPELAREVFELMQRNGITPNMCSLILMMNGYLISGRISDALNFFNDV 662
Query: 166 EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHS 225
++ ++ ++ L+ L ++ ++ + + F R + GL + E Y+L++ + C +S
Sbjct: 663 QRRGLATKKLYVALITGLCKSNKVDISREYFFRMLRVGLNPSLECYELLVQKLCSLQRYS 722
Query: 226 NALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNC 285
A+ I + GR ++F N LL I + T N+ E+ + T
Sbjct: 723 EAMHIINVSQKMGRPVSSFIGNVLLYHSL---ISPQLYDTCVNLRGVEEGVFSGNSTLCL 779
Query: 286 VIQAYT-RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+I A++ R + D+ L+ K PN+ TY LL++
Sbjct: 780 MIGAFSGRLRVSHYITDLERLI------EKCFPPNIFTYNLLLK 817
>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 481
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
Query: 176 WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEME 235
W+++++ + ++++ K+F + + G+ T + YD + + G + + +M
Sbjct: 83 WVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMV 142
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
G T FN L+ G E A FE+++ E + PD TYN +I YTR +
Sbjct: 143 NEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDLKSRE--ITPDVVTYNTMINGYTRVK- 199
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIR 341
++++ + M E K++ P V TY L++ + V +A+R
Sbjct: 200 --KMEEAEKYFLEMKE--KKIDPTVVTYTTLIKGYASIDRVDDALR 241
>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 395
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 102/239 (42%), Gaps = 16/239 (6%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALA 146
++ Y +++ G SP P ++ L+ +G+ E A L G P ++ L+
Sbjct: 160 NLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGY 219
Query: 147 RLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
R+ G K E+ +M + +N DI+ ++ ++++ L + L D F + GL
Sbjct: 220 RIAGD---TEKVCELFESMVEQGMNPDIK-SYTVVIDTLCADGRLNDGLSYFKQLTDMGL 275
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
Y+L+I K+G AL + +ME G + +N L+ G A
Sbjct: 276 EPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGK 335
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+E E KP+ TYN +I+ Y+ + S ++ G M+ R PN TY
Sbjct: 336 MYE--ELLAKGWKPNVFTYNALIRGYSVSGS---PENAFAAYGRMIVGGCR--PNSSTY 387
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 6/213 (2%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
++ L++ DA + D +M+ G P ++ L+ Y + GD E + +
Sbjct: 180 LLDGLLKDGNIEDAEALFD---EMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMV 236
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLE 190
G+ P ++ + + G GL + + + + +L+ L ++ LE
Sbjct: 237 EQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLE 296
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+A ++ K G+ Y+ +I KAG + A ++ E+ A G F +N L+
Sbjct: 297 EALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALI 356
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETY 283
+ G PE AFA + M G +P++ TY
Sbjct: 357 RGYSVSGSPENAFAAYGRMIVGG--CRPNSSTY 387
>gi|326487288|dbj|BAJ89628.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 461
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 108/247 (43%), Gaps = 8/247 (3%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ D+I +M G+ + ++GL+ + G A ++ G++P ET AL
Sbjct: 210 KATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKMRGQGIKPDIETWNALI 269
Query: 147 RLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
R G + L LAAM E+ Y + ++ ++ L ++ ++F + G +
Sbjct: 270 RWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINRLGEQGKWDELKELFDKMRNRGFK 329
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
+ IY +++ + G +A E ++A + F L + A G+ E +
Sbjct: 330 ESGAIYAVLVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCVLANAYAQQGLCEQTVSV 389
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
+ ME + ++P+ N +I A++ A + Q V + ++D + P+V TY
Sbjct: 390 LQLME--AEGIEPNLVMLNLLINAFSTAGRHLEAQAVFQ----HIKDSG-MSPDVVTYTT 442
Query: 326 LVECFTK 332
L++ F +
Sbjct: 443 LMKAFMR 449
Score = 42.7 bits (99), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 15/222 (6%)
Query: 84 DAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP------ 137
D R ++ DM AAG+ P ++ L+ A G A L G+RP
Sbjct: 67 DLARSLQLLADMQAAGMRPSAAAYARLIRALARAGRALEAEALLLEMRHLGLRPDAAHYN 126
Query: 138 -LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVF 196
L E L+A A L LA + L + A + + + R+ +++L++ R LED+ V
Sbjct: 127 ALLEGLLARAHL----RLADR-LLLQMADDGVARN-RRTYMLLLDAYARAGRLEDSWWVL 180
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ G+R Y ++ +G A ++ EM+ G +N L+
Sbjct: 181 GEMKRWGIRLDTAGYSTLVRLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKY 240
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
G A FE M G+ +KPD ET+N +I+ + R + R
Sbjct: 241 GQLADARKMFEKMR-GQG-IKPDIETWNALIRWHCRVGNMKR 280
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,014,345,433
Number of Sequences: 23463169
Number of extensions: 612554442
Number of successful extensions: 2904481
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 8132
Number of HSP's that attempted gapping in prelim test: 2786901
Number of HSP's gapped (non-prelim): 64740
length of query: 883
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 731
effective length of database: 8,792,793,679
effective search space: 6427532179349
effective search space used: 6427532179349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 82 (36.2 bits)