BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002761
(883 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/349 (20%), Positives = 137/349 (39%), Gaps = 30/349 (8%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I+ + + H + + R ++ +M G+ +H ++ YT+ D + + KR
Sbjct: 416 IYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRL 475
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKY 188
G P T L L+ G +K LE+ M E + ++++ + +++ V+ K
Sbjct: 476 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLK-TYSMMINGFVKLKD 534
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+A VF K G++ +Y+ +I+ C G+ A++ EM+ TT F
Sbjct: 535 WANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMP 594
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR---VQDVAEL 305
++ A G + F+ M P T+N +I ++ + D L
Sbjct: 595 IIHGYAKSGDMRRSLEVFDMMRRCG--CVPTVHTFNGLINGLVEKRQMEKAVEILDEMTL 652
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP 365
G+ +H TY +++ + +A +F LQN + E
Sbjct: 653 AGVSANEH--------TYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEA----- 699
Query: 366 LSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSW 414
L+A C+ GR+ L + M+ N +P + + Y L+ W
Sbjct: 700 ---LLKACCKSGRMQSALAVTKEMSARN--IPRNSFV----YNILIDGW 739
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 111/287 (38%), Gaps = 45/287 (15%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
+D V DM+ G+ P ++ ++ A+ G+ + A+ ++K RP T
Sbjct: 533 KDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 592
Query: 143 IALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKV------ 195
+ + + G + LE+ M + + L+ LV + +E A ++
Sbjct: 593 MPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTL 652
Query: 196 -----------------------------FLRGAKGGLRATDEIYDLMIAEDCKAGDHSN 226
F R GL Y+ ++ CK+G +
Sbjct: 653 AGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQS 712
Query: 227 ALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCV 286
AL + EM A +F +N L+ A G A + M+ ++ +KPD TY
Sbjct: 713 ALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK--KEGVKPDIHTYTSF 770
Query: 287 IQAYTRAESYDR-VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
I A ++A +R Q + E+ + V +PN+KTY L++ + +
Sbjct: 771 ISACSKAGDMNRATQTIEEMEALGV------KPNIKTYTTLIKGWAR 811
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 5/209 (2%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R + +++ +M AG+S ++ ++ Y GD A R + G+ T
Sbjct: 638 RQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTY 697
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQAWL--ILVEELVRNKYLEDANKVFLRGA 200
AL + G L + M N R +++ IL++ R + +A + +
Sbjct: 698 EALLKACCKSGRMQSALAVTKEMSARNIP-RNSFVYNILIDGWARRGDVWEAADLIQQMK 756
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
K G++ Y I+ KAGD + A + EMEA G + L+ A +PE
Sbjct: 757 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPE 816
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQA 289
A + +E M+ +KPD Y+C++ +
Sbjct: 817 KALSCYEEMKAMG--IKPDKAVYHCLLTS 843
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/312 (20%), Positives = 119/312 (38%), Gaps = 68/312 (21%)
Query: 34 EKKTRRKKQQRRQQKHGDSLLSTNG----SVVSAAEQ---------GLRLIFMEELMQHA 80
E++ RK QR +L TNG +V+SA E+ GL + F +
Sbjct: 275 EREGSRKSLQR--------ILDTNGDNWQAVISAFEKISKPSRTEFGLMVKF------YG 320
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
R D R + M A G++P R + L+ AY + D + A+ +++
Sbjct: 321 RRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRK----------- 369
Query: 141 TLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGA 200
+ +G+E M + Y + +V + + E A+ F
Sbjct: 370 -------------MKEEGIE----MSLVTYSV------IVGGFSKAGHAEAADYWFDEAK 406
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
+ IY +I C+ + A + EME G A ++ ++ +
Sbjct: 407 RIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEK 466
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
F+ ++ E P TY C+I YT+ + +V+ ++ + ++ N+
Sbjct: 467 KGLVVFKRLK--ECGFTPTVVTYGCLINLYTKVGKISKALEVSRVM-----KEEGVKHNL 519
Query: 321 KTYALLVECFTK 332
KTY++++ F K
Sbjct: 520 KTYSMMINGFVK 531
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 40/230 (17%)
Query: 161 ILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCK 220
+++A EKI+ R + ++V+ R + A + F R G+ T IY +I
Sbjct: 297 VISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAV 356
Query: 221 AGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE------------- 267
D AL +M+ G + ++ ++ + G E A F+
Sbjct: 357 GRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASI 416
Query: 268 ------------NMEYGEDYMKP-DTETYNCVIQAY-TRAESYDRVQDVAELLGMMVEDH 313
NME E ++ + E + I Y T + Y V D E G++V
Sbjct: 417 YGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVAD--EKKGLVV--F 472
Query: 314 KRLQ-----PNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
KRL+ P V TY L+ +TK +++A+ R ++ E G K HN
Sbjct: 473 KRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMK--EEGVK--HN 518
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 5/225 (2%)
Query: 70 LIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKR 129
+IF + H+RN + + + M++ GL P ++ LV + NGD A + +
Sbjct: 346 VIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDG 405
Query: 130 ELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKY 188
+ G+RP T L F G LEI M++ ++ R + LV + +
Sbjct: 406 MIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGR 465
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+ DA + + G++ D Y +M+ CK GD ++ EM++ G + + +N
Sbjct: 466 VIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNV 525
Query: 249 LLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTR 292
LL+ G + A + M G + PD TYN +++ + R
Sbjct: 526 LLNGLCKLGQMKNADMLLDAMLNIG---VVPDDITYNTLLEGHHR 567
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 10/174 (5%)
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
+EIL A +N + + IL+ + + + DA KVF K L+ T ++ +I
Sbjct: 229 MEILDAGFPLNVYV---FNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGY 285
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
CK G+ + ++ME + F ++ L++ + A F+ M + + P
Sbjct: 286 CKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEM--CKRGLIP 343
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ + +I ++R D +++ + + K LQP++ Y LV F K
Sbjct: 344 NDVIFTTLIHGHSRNGEIDLMKESYQKML-----SKGLQPDIVLYNTLVNGFCK 392
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 12/256 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P + + LV LNG A+ + R + G +P T + ++ G
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227
Query: 155 ATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
+E+L ME KI D + + I+++ L ++ L++A +F G +A IY
Sbjct: 228 TALAMELLRKMEERKIKLDAVK-YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYT 286
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFENMEY 271
+I C AG + ++ +M F+ L+ C G + E E ++
Sbjct: 287 TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQR 346
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
G + PDT TY +I + + D+ +L +MV K PN++T+ +L+ +
Sbjct: 347 G---ISPDTVTYTSLIDGFCKENQLDKAN---HMLDLMVS--KGCGPNIRTFNILINGYC 398
Query: 332 KYCAVTEAIRHFRALQ 347
K + + + FR +
Sbjct: 399 KANLIDDGLELFRKMS 414
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 109/259 (42%), Gaps = 10/259 (3%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ DMI ++P +F L+ + G A K + G+ P T +L F
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC 363
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
+ K +L M + +IR + IL+ + ++D ++F + + G+ A
Sbjct: 364 KENQLDKANHMLDLMVSKGCGPNIR-TFNILINGYCKANLIDDGLELFRKMSLRGVVADT 422
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y+ +I C+ G A E+ EM + + LL G PE A FE
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEK 482
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+E + M+ D YN +I A D D+ L + K ++P+VKTY +++
Sbjct: 483 IE--KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL-----KGVKPDVKTYNIMIG 535
Query: 329 CFTKYCAVTEAIRHFRALQ 347
K +++EA FR ++
Sbjct: 536 GLCKKGSLSEADLLFRKME 554
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 20/241 (8%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M + P ++ L+ +G E AM+ LK G+ P + L F +G
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383
Query: 155 ATKGLEILAAM-------EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
+E L M + +NY+ ++ L +N + A ++F + + G
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNT------VLATLCKNGKADQALEIFGKLGEVGCSPN 437
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
Y+ M + +GD AL + EM + G +N ++SC G+ + AF
Sbjct: 438 SSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLV 497
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
+M E P TYN V+ + +A R++D +L MV + R PN TY +L+
Sbjct: 498 DMRSCE--FHPSVVTYNIVLLGFCKAH---RIEDAINVLESMVGNGCR--PNETTYTVLI 550
Query: 328 E 328
E
Sbjct: 551 E 551
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 120/309 (38%), Gaps = 46/309 (14%)
Query: 117 NGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAW 176
+G++ ++H L+ + G P L + F + K + ++ +EK A+
Sbjct: 102 SGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAY 161
Query: 177 LILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA 236
L+ + ++DA +V R Y++MI C G AL++ ++ +
Sbjct: 162 NALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLS 221
Query: 237 AGRMATTFHFNHLLSCQATC---GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
T + L+ +AT G+ E E + G +KPD TYN +I+ +
Sbjct: 222 DNCQPTVITYTILI--EATMLEGGVDEALKLMDEMLSRG---LKPDMFTYNTIIRGMCKE 276
Query: 294 ESYDRVQDVAE----------------LLGMMVEDHK--------------RLQPNVKTY 323
DR ++ LL ++ K + PNV TY
Sbjct: 277 GMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTY 336
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELL 383
++L+ + + EA+ + ++ K L + DPL + A CREGR+ +
Sbjct: 337 SILITTLCRDGKIEEAMNLLKLMKE-----KGLTPDAYSYDPL---IAAFCREGRLDVAI 388
Query: 384 EALEAMAKD 392
E LE M D
Sbjct: 389 EFLETMISD 397
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 117/310 (37%), Gaps = 36/310 (11%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +++ P ++ L+ A L G + A+ + LS G++P T + R
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274
Query: 151 SKGLATKGLEILAAME-------KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
+G+ + E++ +E I+Y+I L+ L+ E+ K+ +
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNI------LLRALLNQGKWEEGEKLMTKMFSEK 328
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
Y ++I C+ G A+ + M+ G + ++ L++ G +VA
Sbjct: 329 CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAI 388
Query: 264 ATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
E M D PD YN V+ + D+ ++ LG PN +Y
Sbjct: 389 EFLETMI--SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLG-----EVGCSPNSSSY 441
Query: 324 ALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDP----LSLYLRALCREGRI 379
T + A+ + RAL +L N DP + + LCREG +
Sbjct: 442 N------TMFSALWSSGDKIRALH------MILEMMSNGIDPDEITYNSMISCLCREGMV 489
Query: 380 IELLEALEAM 389
E E L M
Sbjct: 490 DEAFELLVDM 499
Score = 42.4 bits (98), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 1/156 (0%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+N A + ++ + G SP S++ + A +GD A+H + +S G+ P
Sbjct: 414 CKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDE 473
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLR 198
T ++ +G+ + E+L M + + I++ + +EDA V
Sbjct: 474 ITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLES 533
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
G R + Y ++I AG + A+E+A ++
Sbjct: 534 MVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 112/270 (41%), Gaps = 11/270 (4%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
R + +N ++ +M+ G P +++ L+ +Y AM+ + AG +P
Sbjct: 375 GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDR 434
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T L + G +++ M+ + +++ L + +L A+K+F
Sbjct: 435 VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCE 494
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G Y++M+ KA ++ NAL++ +M+ AG ++ ++ CG
Sbjct: 495 MVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGY 554
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
E A A F M+ + PD Y ++ + +A + ++ + + H L+P
Sbjct: 555 LEEAEAVFTEMQ--QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAM-----LHAGLRP 607
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQN 348
NV T L+ F + + EA + LQN
Sbjct: 608 NVPTCNSLLSTFLRVNKIAEA---YELLQN 634
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 20/219 (9%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
QA +L+ LV+ + + K+F + K G+ A +Y++++ K+GD A ++ E
Sbjct: 169 QACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSE 228
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
ME G F +N L+S + A + + ME + P+ TYN I ++R
Sbjct: 229 MEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRME--RSGVAPNIVTYNSFIHGFSRE 286
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
R+++ L + +D + N TY L++ + + + EA+R R + G +
Sbjct: 287 ---GRMREATRLFREIKDD---VTANHVTYTTLIDGYCRMNDIDEALR-LREVMESRGFS 339
Query: 354 K--VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMA 390
V +N LR LC +GRI E L M+
Sbjct: 340 PGVVTYNS---------ILRKLCEDGRIREANRLLTEMS 369
Score = 40.0 bits (92), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 102/260 (39%), Gaps = 21/260 (8%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ R V + M+ G+ ++ LV A + +GD E A L GV P
Sbjct: 179 VKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDI 238
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDA 192
T L ++ K + + L + ME+ + Y+ + R + +A
Sbjct: 239 FTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNS------FIHGFSREGRMREA 292
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
++F R K + A Y +I C+ D AL + ME+ G +N +L
Sbjct: 293 TRLF-REIKDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSIL-- 349
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVED 312
+ C + A E ++PD T N +I AY + E D V V ++ M+E
Sbjct: 350 RKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKIE--DMVSAV-KVKKKMIES 406
Query: 313 HKRLQPNVKTYALLVECFTK 332
L+ ++ +Y L+ F K
Sbjct: 407 G--LKLDMYSYKALIHGFCK 424
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 109/267 (40%), Gaps = 20/267 (7%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL-IAL 145
R V+ M+ G P P+ F+ LV AY +GDH A LK+ + G P + I +
Sbjct: 355 RCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 414
Query: 146 ARLFGSKGLATKGLEILAAMEKINYDIRQAWLIL----VEELVR-----NKYLEDANKVF 196
+ G K + ++L EK ++ A ++L V R KY E A V
Sbjct: 415 GSICGDKD--SLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY-EKAFSVI 471
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
G Y ++ C A A + EM+ G +A + + ++
Sbjct: 472 REMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKA 531
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G+ E A F M E P+ TY +I AY +A+ +V EL M+ +
Sbjct: 532 GLIEQARKWFNEMR--EVGCTPNVVTYTALIHAYLKAK---KVSYANELFETMLSEG--C 584
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHF 343
PN+ TY+ L++ K V +A + F
Sbjct: 585 LPNIVTYSALIDGHCKAGQVEKACQIF 611
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 95/254 (37%), Gaps = 24/254 (9%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+M G +P ++ L+ AY A + LS G P T AL G
Sbjct: 543 EMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAG 602
Query: 154 LATKGLEILAAM------EKINYDIRQ-----------AWLILVEELVRNKYLEDANKVF 196
K +I M ++ +Q + L++ ++ +E+A K+
Sbjct: 603 QVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLL 662
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ G +YD +I CK G A E+ EM G AT + ++ L+
Sbjct: 663 DAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKV 722
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
++A M E+ P+ Y +I + D + +L+ MM E K
Sbjct: 723 KRQDLASKVLSKML--ENSCAPNVVIYTEMIDGLCKVGKTD---EAYKLMQMMEE--KGC 775
Query: 317 QPNVKTYALLVECF 330
QPNV TY +++ F
Sbjct: 776 QPNVVTYTAMIDGF 789
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 119/272 (43%), Gaps = 11/272 (4%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGL--VVAYTLNGDH-EGAMHSLKRELSAGVRP 137
+ RD + + +M+ S G SF+ V+ Y + E A K+ +G +
Sbjct: 217 QGRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKI 276
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVF 196
+T L LF +KGL K EI +MEK + + + +++ L ++ L+ A K+F
Sbjct: 277 DTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLF 336
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
+ + LR + ++ ++ KAG ++++ EM+ G + F L+ A
Sbjct: 337 QQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKA 396
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G + A ++ M+ + +P+ Y +I+++ ++ + V + + +
Sbjct: 397 GKLDTALRLWDEMK--KSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDM-----EKAGF 449
Query: 317 QPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
P TY+ L+E V A++ + ++ N
Sbjct: 450 LPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTN 481
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 7/191 (3%)
Query: 67 GLRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHS 126
GL + +E HA++ V DM AG P P ++ L+ + +G + AM
Sbjct: 419 GLYTMIIES---HAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475
Query: 127 LKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRN 186
+AG+RP + I+L L +K L +IL M+ + Y + ++ +++
Sbjct: 476 YNSMTNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMGYSVDVCASDVLMIYIKD 535
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM-EAAGRMATTFH 245
++ A K G++ + I + K G + +A + + +AG++ +
Sbjct: 536 ASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDSARPLLETLVHSAGKVDLVLY 595
Query: 246 ---FNHLLSCQ 253
HL+ CQ
Sbjct: 596 TSILAHLVRCQ 606
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 145/359 (40%), Gaps = 27/359 (7%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DM+ G++P +F+ L+ A + + A G +P T L R + G
Sbjct: 137 DMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAG 196
Query: 154 LATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
L KGLE+L AME + + +V R +D+ K+ + + GL ++
Sbjct: 197 LTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFN 256
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMA----TTFHFNHLLSCQATCGIPEVAFATFEN 268
I+ CK G +A I +ME + + +N +L G+ E A FE+
Sbjct: 257 SRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFES 316
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+ +D ++YN +Q R + + V L M + K + P++ +Y +L++
Sbjct: 317 IRENDDL--ASLQSYNIWLQGLVRHGKFIEAETV---LKQMTD--KGIGPSIYSYNILMD 369
Query: 329 CFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEA 388
K +++A + L G V + +G L C G++ L+
Sbjct: 370 GLCKLGMLSDA-KTIVGLMKRNG---VCPDAVTYG----CLLHGYCSVGKVDAAKSLLQE 421
Query: 389 MAKDNQPVPPRAMILSRKYRTL-----VSSWIEPLQEEAELGYEIDYIARYISEGGLTG 442
M ++N P A + +L +S E L++ E GY +D + I GL G
Sbjct: 422 MMRNN--CLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCG 478
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 86/212 (40%), Gaps = 18/212 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L + +A +F L+ Y++ I CK G S+A + +ME G
Sbjct: 530 LLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKG 589
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYD 297
+ +N L+ GI F M E E + P+ TYN IQ E
Sbjct: 590 CHKSLETYNSLI---LGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGE--- 643
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+V+D LL M++ K + PNV ++ L+E F K A F + G + L+
Sbjct: 644 KVEDATNLLDEMMQ--KNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLY 701
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
SL L G++++ E LEA+
Sbjct: 702 ---------SLMFNELLAAGQLLKATELLEAV 724
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 115/285 (40%), Gaps = 40/285 (14%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+ D RV ++ +M G P +++ L+ L G + A+ L+R +S+ P
Sbjct: 268 CKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPND 327
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLR 198
T L + AT + +L++ME+ Y + Q + +L+ L + E+A ++ +
Sbjct: 328 VTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRK 387
Query: 199 GAKGGLRAT--------------------DEIYDLMIAEDC---------------KAGD 223
A+ G + EI + MIA C K G
Sbjct: 388 MAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGL 447
Query: 224 HSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETY 283
A+++ EM+ G F ++ L+ CG+ V A + +KPDT Y
Sbjct: 448 CEEAVQVWKEMDKTGCSRNKFCYSVLI--DGLCGVGRVKEAMMVWSKMLTIGIKPDTVAY 505
Query: 284 NCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+ +I+ S D + M+ ++ + QP+V TY +L++
Sbjct: 506 SSIIKGLCGIGSMDAALKLYH--EMLCQEEPKSQPDVVTYNILLD 548
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 88/218 (40%), Gaps = 21/218 (9%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ L++ L + + +++A + G + IY+++I CK GD + ++ M
Sbjct: 224 TYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNM 283
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
G + +N L+ G + A + E M + P+ TY +I +
Sbjct: 284 FLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCI--PNDVTYGTLINGLVKQR 341
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354
R D LL M E L ++ Y++L+ K EA+ +R + E G K
Sbjct: 342 ---RATDAVRLLSSMEERGYHLNQHI--YSVLISGLFKEGKAEEAMSLWRKMA--EKGCK 394
Query: 355 ---VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
V++ S+ + LCREG+ E E L M
Sbjct: 395 PNIVVY---------SVLVDGLCREGKPNEAKEILNRM 423
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 11/174 (6%)
Query: 160 EILAAMEKIN-YDIRQAWLILVEELVR-NKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
E+ AM+KIN Y IL+ L + + ++ ++F + ++ G++ + +++ ++
Sbjct: 294 EVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKS 353
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
C G AL I EME G + T +N L+ E F M + +K
Sbjct: 354 FCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMR--DKGLK 411
Query: 278 PDTETYNCVIQAYTRAESYDRVQ-DVAELLGMMVEDHKRLQPNVKTYALLVECF 330
P TYN ++ AY R R+Q D+ E L +ED L+PNVK+Y L+ +
Sbjct: 412 PSAATYNILMDAYAR-----RMQPDIVETLLREMEDLG-LEPNVKSYTCLISAY 459
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 44/213 (20%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D M GL P S+ L+ AY+++G HE A S + G++P ET ++ F
Sbjct: 471 DAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAF 530
Query: 150 GSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G K +EI W +++ E ++ G R T
Sbjct: 531 RRSGDTGKLMEI--------------WKLMLREKIK-----------------GTRIT-- 557
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG----IPEVAFAT 265
Y+ ++ K G + A ++ E G + +N L++ A G +P++
Sbjct: 558 -YNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLL--- 613
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
E +KPD+ TY+ +I A+ R + R
Sbjct: 614 ---KEMAALNLKPDSITYSTMIYAFVRVRDFKR 643
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA 237
IL+ L + +E A ++ R GL + IY+ MI C+ GD A ME
Sbjct: 359 ILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQ 418
Query: 238 GRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYD 297
G +N L+ + C + E+ A E + + P ETYN +I Y R +D
Sbjct: 419 GMKPDHLAYNCLI--RRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFD 476
Query: 298 RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
+ D+ + + ED+ + PNV +Y L+ C K + EA
Sbjct: 477 KCFDILKEM----EDNGTM-PNVVSYGTLINCLCKGSKLLEA 513
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 14/238 (5%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+ P +++ L+ + G+ E A + + GV P ET L +G K K
Sbjct: 419 GMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKC 478
Query: 159 LEILAAMEKINYDIRQ--AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+IL ME N + ++ L+ L + L +A V G+ IY+++I
Sbjct: 479 FDILKEMED-NGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLID 537
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
C G +A + EM G +N L+ + G +++ A +E +
Sbjct: 538 GCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTG--KLSEAEDLLLEISRKGL 595
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVECFTK 332
KPD TYN +I Y A + R +A + E+ KR ++P +KTY LL+ TK
Sbjct: 596 KPDVFTYNSLISGYGFAGNVQRC--IA-----LYEEMKRSGIKPTLKTYHLLISLCTK 646
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 15/170 (8%)
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
IY+++I CK ++A ++ EM A + + +N L+ G PE +F E M
Sbjct: 216 IYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERM 275
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
+ D+++P T+N +++ +A V+D +L M + P+ T+++L
Sbjct: 276 K--ADHIEPSLITFNTLLKGLFKA---GMVEDAENVLKEMKD--LGFVPDAFTFSIL--- 325
Query: 330 FTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 379
F Y + +A AL YE T V S+ L ALC+EG+I
Sbjct: 326 FDGYSSNEKAE---AALGVYE--TAVDSGVKMNAYTCSILLNALCKEGKI 370
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 19/219 (8%)
Query: 79 HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL-SAGVRP 137
+ R + + D++ +M G P S+ G ++ G +KR++ GV P
Sbjct: 469 YGRKYEFDKCFDILKEMEDNGTMPNVVSY-GTLINCLCKGSKLLEAQIVKRDMEDRGVSP 527
Query: 138 LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVF 196
L SKG M K ++ + L++ L L +A +
Sbjct: 528 KVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLL 587
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
L ++ GL+ Y+ +I+ AG+ + + EM+ +G + T HLL
Sbjct: 588 LEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSG-IKPTLKTYHLL------ 640
Query: 257 GIPEVAFATFENME-----YGEDYMKPDTETYNCVIQAY 290
++ T E +E +GE +KPD YN V+ Y
Sbjct: 641 ----ISLCTKEGIELTERLFGEMSLKPDLLVYNGVLHCY 675
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 117/282 (41%), Gaps = 10/282 (3%)
Query: 70 LIFMEELMQ-HARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLK 128
++F+ LM + + +V +M +P S++ ++ A + H + S
Sbjct: 338 VVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWF 397
Query: 129 RELSA-GVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRN 186
++ A V P T L + K L +L M++ + A+ L+ L +
Sbjct: 398 DKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKA 457
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
K E AN++F + + +Y +MI K G S A+++ EM+ G + +
Sbjct: 458 KRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
N L+S G+ A + ME E+ + D ++N ++ + R R ++ E +
Sbjct: 518 NALMSGMVKAGMINEANSLLRKME--ENGCRADINSHNIILNGFARTGVPRRAIEMFETI 575
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
H ++P+ TY L+ CF EA R R +++
Sbjct: 576 -----KHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKD 612
Score = 40.8 bits (94), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 19/221 (8%)
Query: 181 EELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
E+L RN + A ++F ++ T++IY ++ K G AL++ EM+ AG
Sbjct: 244 EKLGRN---DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCS 300
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQ 300
T + + L+ G + A+ +++M D + PD N ++ + + +
Sbjct: 301 PTVYTYTELIKGLGKAGRVDEAYGFYKDML--RDGLTPDVVFLNNLMNILGKVGRVEELT 358
Query: 301 DVAELLGMMVEDHKRLQPNVKTYALLVEC-FTKYCAVTEAIRHFRALQNYEGGTKVLHNE 359
+V +GM R P V +Y +++ F V+E F ++ V +E
Sbjct: 359 NVFSEMGMW-----RCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK----ADSVSPSE 409
Query: 360 GNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRA 400
+ S+ + C+ R+ + L LE M + P P A
Sbjct: 410 FTY----SILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAA 446
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 120/275 (43%), Gaps = 18/275 (6%)
Query: 107 FHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAME 166
F L+ AY G+ GA L G P + AL +G G I M+
Sbjct: 142 FLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQ 201
Query: 167 KINYDIRQ-AWLILVEELVRNKYLEDANKVF---LRGAKGGLRATDEIYDLMIAEDCKAG 222
+ + I+++ V ++A +VF L K L+ ++Y +MI KAG
Sbjct: 202 SSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAG 261
Query: 223 DHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTET 282
++ A ++ M G +T +N L+S + + EV+ ++ M+ + ++PD +
Sbjct: 262 NYEKARKVFSSMVGKGVPQSTVTYNSLMSFETS--YKEVS-KIYDQMQRSD--IQPDVVS 316
Query: 283 YNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRH 342
Y +I+AY RA R ++ + M++ R P K Y +L++ F V +A
Sbjct: 317 YALLIKAYGRAR---REEEALSVFEEMLDAGVR--PTHKAYNILLDAFAISGMVEQAKTV 371
Query: 343 FRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREG 377
F++++ ++ + ++ LS Y+ A EG
Sbjct: 372 FKSMRR----DRIFPDLWSYTTMLSAYVNASDMEG 402
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 9/220 (4%)
Query: 92 IYD-MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
IYD M + + P S+ L+ AY E A+ + L AGVRP H+ L F
Sbjct: 301 IYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 360
Query: 151 SKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G+ + + +M ++I D+ ++ ++ V +E A K F R G
Sbjct: 361 ISGMVEQAKTVFKSMRRDRIFPDL-WSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNI 419
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y +I KA D +E+ +M +G A ++ C A ++
Sbjct: 420 VTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKE 479
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
ME + PD + N ++ + A + D +++ EL G+
Sbjct: 480 MESCG--VPPDQKAKNVLL---SLASTQDELEEAKELTGI 514
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 112/263 (42%), Gaps = 10/263 (3%)
Query: 83 RDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETL 142
R +V D++ +M + G P S++ L+ AY +G + AM + +AG P T
Sbjct: 296 RRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTY 355
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAK 201
L LFG G ++ M+ N D A + IL+E Y ++ +F +
Sbjct: 356 SVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE 415
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
+ E Y+ +I K G H +A +I M A + ++ + ++ + E
Sbjct: 416 ENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEE 475
Query: 262 AFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
A F M E G + P ET++ ++ ++ R V++ +L +V+ + N
Sbjct: 476 ALVAFNTMHEVGSN---PSIETFHSLLYSFARG---GLVKESEAILSRLVDSG--IPRNR 527
Query: 321 KTYALLVECFTKYCAVTEAIRHF 343
T+ +E + + EA++ +
Sbjct: 528 DTFNAQIEAYKQGGKFEEAVKTY 550
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+ + IY +MI+ + G LE+ EM + G + F + L++ G E +
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLE 197
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTY 323
+ M+ + + P TYN VI A R D LLG+ E H+ +QP++ TY
Sbjct: 198 LLDRMK--NEKISPSILTYNTVINACARGG-----LDWEGLLGLFAEMRHEGIQPDIVTY 250
Query: 324 ALLVECFTKYCAV 336
L+ CA+
Sbjct: 251 NTLLSA----CAI 259
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 99/234 (42%), Gaps = 12/234 (5%)
Query: 100 LSPGPRSFHGLVVAYTLNG-DHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
+SP +++ ++ A G D EG + G++P T L +GL +
Sbjct: 207 ISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEA 266
Query: 159 LEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+ M I D+ + LVE + + LE + A GG Y++++
Sbjct: 267 EMVFRTMNDGGIVPDL-TTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLE 325
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
K+G A+ + ++M+AAG ++ LL+ G + F +E
Sbjct: 326 AYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF--LEMKSSNT 383
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY-ALLVEC 329
PD TYN +I+ + + ++V L MVE++ ++P+++TY ++ C
Sbjct: 384 DPDAATYNILIEVFGEGGYF---KEVVTLFHDMVEEN--IEPDMETYEGIIFAC 432
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 19/283 (6%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNG---DHEGAMHSL 127
+ M+ L ++ R +A ++ D M GL P ++ L+ Y G + G + +
Sbjct: 306 LLMDYLCKNGRCMEARKIFD---SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 362
Query: 128 KRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRN 186
R G+ P H L + +G + + + + M + + + ++ L ++
Sbjct: 363 VRN---GIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKS 419
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+EDA F + GL + +Y+ +I C A E+ EM G T F
Sbjct: 420 GRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFF 479
Query: 247 NHLLSCQATCGIPEVAFATFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAEL 305
N ++ G + FE M G +KP+ TYN +I Y A D + +L
Sbjct: 480 NSIIDSHCKEGRVIESEKLFELMVRIG---VKPNVITYNTLINGYCLAGKMD---EAMKL 533
Query: 306 LGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
L MV L+PN TY+ L+ + K + +A+ F+ +++
Sbjct: 534 LSGMVS--VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ +IA CKA A+E+ M G M +N +L + G P+ A + M
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMR 293
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
D ++PD TY+ ++ + R + ++ M + + L+P + TY L++ +
Sbjct: 294 --SDGVEPDVVTYSLLMDYLCKN---GRCMEARKIFDSMTK--RGLKPEITTYGTLLQGY 346
Query: 331 TKYCAVTE 338
A+ E
Sbjct: 347 ATKGALVE 354
Score = 39.7 bits (91), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 175 AWLILVEELVRNKYLEDANKVFLR-GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
A+ L++ L +K DA + LR + G Y++++ C ALE+ +
Sbjct: 124 AFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHM 183
Query: 234 M---EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAY 290
M G + +++ G + A++T+ M + + PD TYN +I A
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEML--DRGILPDVVTYNSIIAAL 241
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
+A++ D+ E+L MV++ + P+ TY ++ + EAI
Sbjct: 242 CKAQAMDKAM---EVLNTMVKNG--VMPDCMTYNSILHGYCSSGQPKEAI---------- 286
Query: 351 GGTKVLHNEGNFGDPL--SLYLRALCREGRIIELLEALEAMAK 391
G K + ++G D + SL + LC+ GR +E + ++M K
Sbjct: 287 GFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTK 329
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/285 (18%), Positives = 115/285 (40%), Gaps = 24/285 (8%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
+F + +A+ + V M GL+P ++ ++ +G E AM ++
Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432
Query: 131 LSAGVRP---LHETLIALARLFGSKGLAT-----KGLEILAAMEKINYDIRQAWL-ILVE 181
+ G+ P ++ +LI GL T + E++ M + + +++
Sbjct: 433 IDEGLSPGNIVYNSLI--------HGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID 484
Query: 182 ELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMA 241
+ + ++ K+F + G++ Y+ +I C AG A+++ M + G
Sbjct: 485 SHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKP 544
Query: 242 TTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQD 301
T ++ L++ E A F+ ME + PD TYN ++Q + R
Sbjct: 545 NTVTYSTLINGYCKISRMEDALVLFKEME--SSGVSPDIITYNIILQGLFQTR---RTAA 599
Query: 302 VAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL 346
EL + E +++ + TY +++ K +A++ F+ L
Sbjct: 600 AKELYVRITESGTQIE--LSTYNIILHGLCKNKLTDDALQMFQNL 642
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 30/235 (12%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y ++ CK GD AL + +MEAA A FN ++ EVA F ME
Sbjct: 226 YGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEME 285
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
++P+ TYN +I +Y R D + LL M+E K++ PNV T+ L++ F
Sbjct: 286 --TKGIRPNVVTYNSLINCLC---NYGRWSDASRLLSNMLE--KKINPNVVTFNALIDAF 338
Query: 331 TKYCAVTEAIR-HFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
K + EA + H +Q + +N L + C R+ E + + M
Sbjct: 339 FKEGKLVEAEKLHEEMIQRSIDPDTITYN---------LLINGFCMHNRLDEAKQMFKFM 389
Query: 390 -AKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGE 443
+KD P + Y TL++ + + + E G E + R +S+ GL G
Sbjct: 390 VSKDCLPNI-------QTYNTLINGFCKC--KRVEDGVE---LFREMSQRGLVGN 432
Score = 41.2 bits (95), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 38/177 (21%)
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAF 263
++A I++ +I CK A+++ EME G +N L++C G A
Sbjct: 254 IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDAS 313
Query: 264 ATFENM---------------------------------EYGEDYMKPDTETYNCVIQAY 290
NM E + + PDT TYN +I +
Sbjct: 314 RLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGF 373
Query: 291 TRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
++R+ + ++ MV K PN++TY L+ F K V + + FR +
Sbjct: 374 CM---HNRLDEAKQMFKFMVS--KDCLPNIQTYNTLINGFCKCKRVEDGVELFREMS 425
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 16/199 (8%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
Q + L+ + K +ED ++F ++ GL Y +I +AGD +A ++ ++
Sbjct: 399 QTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSA-QMVFK 457
Query: 234 MEAAGRMAT-TFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+ R+ T ++ LL + G + A F+ ++ E M+ + YN +I+ +
Sbjct: 458 QMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSE--MELNIFIYNTMIEGMCK 515
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
A D+ L ++P+V TY ++ + EA FR ++ E G
Sbjct: 516 AGKVGEAWDLFCSLS--------IKPDVVTYNTMISGLCSKRLLQEADDLFRKMK--EDG 565
Query: 353 TKVLHNEGNFGDPLSLYLR 371
T L N G + + LR
Sbjct: 566 T--LPNSGTYNTLIRANLR 582
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 16/245 (6%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V+ +M+ G SP +++ L+ AY +G + AM + G +P T L F
Sbjct: 336 VLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFE 395
Query: 151 SKGLATKGLEILAAME----KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRA 206
G + I M K N A++ + R K+ E K+F GL
Sbjct: 396 RAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGN--RGKFTE-MMKIFDEINVCGLSP 452
Query: 207 TDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
++ ++A + G S + EM+ AG + FN L+S + CG E A +
Sbjct: 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVY 512
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV-AELLGMMVEDHKRLQPNVKTYAL 325
M + + PD TYN V+ A R +++ + V AE+ ED R +PN TY
Sbjct: 513 RRML--DAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM-----ED-GRCKPNELTYCS 564
Query: 326 LVECF 330
L+ +
Sbjct: 565 LLHAY 569
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 11/215 (5%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M G P ++ L+ + G E AM + +AG +P T A +++G++G
Sbjct: 375 MAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRG- 433
Query: 155 ATKGLEILAAMEKINY-----DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
K E++ ++IN DI W L+ +N + + VF + G E
Sbjct: 434 --KFTEMMKIFDEINVCGLSPDI-VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERE 490
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ +I+ + G A+ + M AG +N +L+ A G+ E + M
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM 550
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAE 304
E G KP+ TY ++ AY + + +AE
Sbjct: 551 EDGR--CKPNELTYCSLLHAYANGKEIGLMHSLAE 583
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 116/279 (41%), Gaps = 42/279 (15%)
Query: 88 VNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP----LHETLI 143
V+ V +M AG P +F+ L+ AY+ G E AM +R L AGV P + L
Sbjct: 473 VSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLA 532
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
ALAR G+ + ++LA ME D R EL L + G + G
Sbjct: 533 ALAR----GGMWEQSEKVLAEME----DGRCK----PNELTYCSLLH----AYANGKEIG 576
Query: 204 LRAT--DEIYDLMIAED----------CKAGDHSNALEIAY-EMEAAGRMATTFHFNHLL 250
L + +E+Y +I C D E A+ E++ G N ++
Sbjct: 577 LMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMV 636
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA-ELLGMM 309
S + A + M+ E P TYN ++ ++R+ + + +++ E+L
Sbjct: 637 SIYGRRQMVAKANGVLDYMK--ERGFTPSMATYNSLMYMHSRSADFGKSEEILREILA-- 692
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
K ++P++ +Y ++ + + + +A R F ++N
Sbjct: 693 ----KGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRN 727
Score = 37.7 bits (86), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 99/271 (36%), Gaps = 48/271 (17%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G S S+ L+ A+ +G + A++ K+ G +P T + +FG G T
Sbjct: 203 GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMG--TPW 260
Query: 159 LEILAAMEKINYD--------------------IRQAWLILVEEL----------VRNKY 188
+I + +EK+ D + Q + EE+ N
Sbjct: 261 NKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNAL 320
Query: 189 LE---------DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGR 239
L+ +A KV G + Y+ +I+ + G A+E+ +M G
Sbjct: 321 LDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGT 380
Query: 240 MATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV 299
F + LLS G E A + FE M KP+ T+N I+ Y + +
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAG--CKPNICTFNAFIKMYGNRGKFTEM 438
Query: 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
+ + + + L P++ T+ L+ F
Sbjct: 439 MKIFDEINVC-----GLSPDIVTWNTLLAVF 464
Score = 37.0 bits (84), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 32/228 (14%)
Query: 145 LARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVE--ELVRNKYLEDANKV--FLRGA 200
L + + GL+ +G ++L ++ + N+D Q +L E E ++K ++++ FL+G
Sbjct: 86 LGKPWSYHGLSPQGQQVLRSLIEPNFDSGQLDSVLSELFEPFKDKPESTSSELLAFLKGL 145
Query: 201 KG------GLRATD--------------EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRM 240
LRA D + ++I+ K G S+A + ++ G
Sbjct: 146 GFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFS 205
Query: 241 ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES-YDRV 299
+ + L+S A G A F+ ME ED KP TYN ++ + + + ++++
Sbjct: 206 LDVYSYTSLISAFANSGRYREAVNVFKKME--EDGCKPTLITYNVILNVFGKMGTPWNKI 263
Query: 300 QDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ E + + P+ TY L+ C + EA + F ++
Sbjct: 264 TSLVEKM-----KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMK 306
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 111/255 (43%), Gaps = 10/255 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P + + LV LNG A+ + R + G +P T + + G
Sbjct: 184 MVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQ 243
Query: 155 ATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+E+L ME+ N + + I+++ L ++ L++A +F G +A Y+
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNT 303
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFENMEYG 272
+I C AG + ++ +M F+ L+ G + E E M+ G
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRG 363
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ P+T TYN +I + + +R+++ +++ +M+ K P++ T+ +L+ + K
Sbjct: 364 ---IAPNTITYNSLIDGFCKE---NRLEEAIQMVDLMIS--KGCDPDIMTFNILINGYCK 415
Query: 333 YCAVTEAIRHFRALQ 347
+ + + FR +
Sbjct: 416 ANRIDDGLELFREMS 430
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 17/212 (8%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LV L N + DA + R + G + + Y ++ CK+G + A+E+ +ME
Sbjct: 199 LVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN 258
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
++ ++ G + AF F ME K D TYN +I + A +D
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG--FKADIITYNTLIGGFCNAGRWD- 315
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR-ALQNYEGGTKVLH 357
D A+LL M++ +++ PNV T+++L++ F K + EA + + +Q + +
Sbjct: 316 --DGAKLLRDMIK--RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITY 371
Query: 358 NEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
N + C+E R+ E ++ ++ M
Sbjct: 372 NS---------LIDGFCKENRLEEAIQMVDLM 394
Score = 37.4 bits (85), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 6/171 (3%)
Query: 85 APRVND---VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET 141
A R++D + +M G+ +++ LV + +G E A + +S VRP +
Sbjct: 416 ANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVS 475
Query: 142 LIALARLFGSKGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRG 199
L G K LEI +EK + DI ++I++ + ++DA +F
Sbjct: 476 YKILLDGLCDNGELEKALEIFGKIEKSKMELDI-GIYMIIIHGMCNASKVDDAWDLFCSL 534
Query: 200 AKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
G++ Y++MI+E C+ S A + +M G +N L+
Sbjct: 535 PLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILI 585
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 36/193 (18%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ DMI +SP +F L+ ++ G A LK + G+ P
Sbjct: 320 LLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP------------- 366
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
I Y+ L++ + LE+A ++ G
Sbjct: 367 ---------------NTITYNS------LIDGFCKENRLEEAIQMVDLMISKGCDPDIMT 405
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
++++I CKA + LE+ EM G +A T +N L+ G EVA F+ M
Sbjct: 406 FNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMV 465
Query: 271 YGEDYMKPDTETY 283
++PD +Y
Sbjct: 466 --SRRVRPDIVSY 476
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 95/239 (39%), Gaps = 35/239 (14%)
Query: 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF-ENMEYGEDYMKP 278
K + L + +ME+ G + + + +++C C AF+T + M+ G + P
Sbjct: 100 KTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYE---P 156
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVE-DHKRLQPNVKTYALLVECFTKYCAVT 337
DT +N ++ RV + EL+ MVE HK P + T LV V+
Sbjct: 157 DTVIFNTLLNGLCLEC---RVSEALELVDRMVEMGHK---PTLITLNTLVNGLCLNGKVS 210
Query: 338 EAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVP 397
+A+ L + T NE +G P+ L +C+ G+ +E L M + N +
Sbjct: 211 DAV----VLIDRMVETGFQPNEVTYG-PV---LNVMCKSGQTALAMELLRKMEERNIKLD 262
Query: 398 PRAMILSRKYRTLVSSWIE--------PLQEEAEL-GYEIDYIARYISEGGLTGERKRW 447
+ KY ++ + L E E+ G++ D I GG RW
Sbjct: 263 ------AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNA-GRW 314
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 106/254 (41%), Gaps = 9/254 (3%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+MI GL+ ++ L+ + A+ R + G RP T L L ++G
Sbjct: 295 EMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEG 354
Query: 154 LATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+ L+ + + K Y + + LV L + ++ +A+++F ++ + Y
Sbjct: 355 QLVR-LDGVVEISK-RYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMS 412
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
M+ C AG A+E+ ++ G + T +N + S FE M+ +
Sbjct: 413 MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMK--K 470
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
D PD TYN +I ++ R D ++ E L + +P++ +Y L+ C K
Sbjct: 471 DGPSPDIFTYNILIASFGRVGEVDEAINIFEEL-----ERSDCKPDIISYNSLINCLGKN 525
Query: 334 CAVTEAIRHFRALQ 347
V EA F+ +Q
Sbjct: 526 GDVDEAHVRFKEMQ 539
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+++IA + G+ A+ I E+E + +N L++C G + A F+ M+
Sbjct: 480 YNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ 539
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E + PD TY+ +++ + + E RV+ L M+ K QPN+ TY +L++C
Sbjct: 540 --EKGLNPDVVTYSTLMECFGKTE---RVEMAYSLFEEMLV--KGCQPNIVTYNILLDCL 592
Query: 331 TKYCAVTEAI 340
K EA+
Sbjct: 593 EKNGRTAEAV 602
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 21/215 (9%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
A+ +L++ L ++ E A +VF K R + Y +MI + G A+ + EM
Sbjct: 240 AYNMLLDALAKD---EKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEM 296
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
G +N L+ A + + A F M E +P+ TY+ ++
Sbjct: 297 ITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMV--ETGCRPNEYTYSLLLNLLVAEG 354
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTK 354
R+ V E+ KR Y+ LV +K V+EA R F + ++
Sbjct: 355 QLVRLDGVVEI-------SKRYMTQ-GIYSYLVRTLSKLGHVSEAHRLFCDMWSFPV--- 403
Query: 355 VLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
+G +S+ L +LC G+ IE +E L +
Sbjct: 404 ----KGERDSYMSM-LESLCGAGKTIEAIEMLSKI 433
>sp|Q0WVV0|PPR31_ARATH Pentatricopeptide repeat-containing protein At1g10910,
chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2
SV=1
Length = 664
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 3/214 (1%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
A N + + I M G SP + L+ +Y+ GD++ A + S G+ P
Sbjct: 248 ASNGRSEEAENFIQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNK 307
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDANKVFLR 198
+ L +++ GL + E+L+ +E Y + + +L++ L + LE+A +F
Sbjct: 308 VMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIFDD 367
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G+R+ +MI+ C++ A E++ + E N +L G
Sbjct: 368 MKGKGVRSDGYANSIMISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCRAGE 427
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
E + M+ E + PD T++ +I+ + +
Sbjct: 428 MESVMRMMKKMD--EQAVSPDYNTFHILIKYFIK 459
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 107/269 (39%), Gaps = 10/269 (3%)
Query: 81 RNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHE 140
++R +V MI G P +++ L+V D + M LK + G++P
Sbjct: 200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259
Query: 141 TLIALARLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLR 198
T R+ G G + EIL M E D+ + +L++ L + L+ A +VF +
Sbjct: 260 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDV-VTYTVLIDALCTARKLDCAKEVFEK 318
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
G + Y ++ D + + EME G + F L+ G
Sbjct: 319 MKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGN 378
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
AF T + M + + P+ TYN +I R R+ D EL G M + ++P
Sbjct: 379 FGEAFDTLDVMR--DQGILPNLHTYNTLICGLLRVH---RLDDALELFGNM--ESLGVKP 431
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQ 347
TY + ++ + K A+ F ++
Sbjct: 432 TAYTYIVFIDYYGKSGDSVSALETFEKMK 460
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 8/193 (4%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P ++ L+ + G+ + A KR + GVRP +T L G
Sbjct: 917 MLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Query: 155 ATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVF--LRGAKGGLRATDEI 210
+GL +++ +N D+ + +++ L ++ LE+A +F ++ ++ G+
Sbjct: 977 VDEGLHYFKELKESGLNPDV-VCYNLIINGLGKSHRLEEALVLFNEMKTSR-GITPDLYT 1034
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y+ +I AG A +I E++ AG F FN L+ + G PE A+A ++ M
Sbjct: 1035 YNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1094
Query: 271 YGEDYMKPDTETY 283
G P+T TY
Sbjct: 1095 TGG--FSPNTGTY 1105
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/385 (21%), Positives = 149/385 (38%), Gaps = 38/385 (9%)
Query: 71 IFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
I ++ L + +A DV+ D G+ P +++ L+ + A+
Sbjct: 368 ILVDALCKAGNFGEAFDTLDVMRD---QGILPNLHTYNTLICGLLRVHRLDDALELFGNM 424
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKI----NYDIRQAWLILVEELVRN 186
S GV+P T I +G G + LE M+ N A L + + R+
Sbjct: 425 ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRD 484
Query: 187 KYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+ +A ++F GL Y++M+ K G+ A+++ EM G
Sbjct: 485 R---EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVV 541
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
N L++ + A+ F M+ E +KP TYN ++ + ++Q+ EL
Sbjct: 542 NSLINTLYKADRVDEAWKMFMRMK--EMKLKPTVVTYNTLLAGLGKN---GKIQEAIELF 596
Query: 307 GMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVL-HNEGNFGDP 365
MV+ K PN T+ L +C K VT A++ + + V +N FG
Sbjct: 597 EGMVQ--KGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFG-- 652
Query: 366 LSLYLRALCREGRIIELLEALEAMAKDNQP--------VPP--RAMILSRKYRTLVSSWI 415
L + G++ E + M K P +P +A ++ Y+ + +
Sbjct: 653 -------LVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLY 705
Query: 416 EPLQEEAELGYEIDYIARYISEGGL 440
+ A L +E D I ++E G+
Sbjct: 706 NCADQPANLFWE-DLIGSILAEAGI 729
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMA-TTFHFNHLLSCQATCGIPEVAFATFENM 269
++++I+ KAG+ +AL++ Y++ + + T + L+ + G A FE M
Sbjct: 858 HNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGM 917
Query: 270 -EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+YG +P+ YN +I + +A D L MV++ R P++KTY++LV+
Sbjct: 918 LDYG---CRPNCAIYNILINGFGKAGEADAA---CALFKRMVKEGVR--PDLKTYSVLVD 969
Query: 329 CFTKYCAVTEAIRHFRALQ 347
C V E + +F+ L+
Sbjct: 970 CLCMVGRVDEGLHYFKELK 988
Score = 40.8 bits (94), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 25/239 (10%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L+++++ +A +V+ R G R + + Y ++ K D + + + EME G
Sbjct: 194 LIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLG 253
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
+ F + G A+ + M+ ++ PD TY +I A A D
Sbjct: 254 LKPNVYTFTICIRVLGRAGKINEAYEILKRMD--DEGCGPDVVTYTVLIDALCTARKLDC 311
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHN 358
++V E M HK P+ TY L++ F+ R L + + +
Sbjct: 312 AKEVFE--KMKTGRHK---PDRVTYITLLDRFSDN----------RDLDSVKQFWSEMEK 356
Query: 359 EGNFGD--PLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
+G+ D ++ + ALC+ G E + L+ M +Q + P Y TL+ +
Sbjct: 357 DGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMR--DQGILPNL----HTYNTLICGLL 409
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 6/149 (4%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ L ++ L +A ++F G R IY+++I KAG+ A + M G
Sbjct: 897 LIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG 956
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
++ L+ C G + F+ ++ E + PD YN +I ++ R
Sbjct: 957 VRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK--ESGLNPDVVCYNLIINGLGKSH---R 1011
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLV 327
+++ L M + + + P++ TY L+
Sbjct: 1012 LEEALVLFNEM-KTSRGITPDLYTYNSLI 1039
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 120/314 (38%), Gaps = 16/314 (5%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+NR ++ M G P +++ LV G A L+ + + P
Sbjct: 199 CKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNV 258
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLR 198
T AL F G + E+ M +++ Y + L+ L L++A ++F
Sbjct: 259 ITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYL 318
Query: 199 GAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGI 258
+ G + IY +I CK+ + ++I YEM G +A T + L+ G
Sbjct: 319 MERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGR 378
Query: 259 PEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQP 318
P+VA F M PD TYN ++ ++ + E + + +
Sbjct: 379 PDVAQEVFNQMS--SRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYM-----RKREMDI 431
Query: 319 NVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGR 378
N+ TY ++++ K V +A F +L + G K N + +S CR G
Sbjct: 432 NIVTYTIIIQGMCKLGKVEDAFDLFCSL--FSKGMK--PNVITYTTMIS----GFCRRGL 483
Query: 379 IIELLEALEAMAKD 392
I E + M +D
Sbjct: 484 IHEADSLFKKMKED 497
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 96/248 (38%), Gaps = 49/248 (19%)
Query: 252 CQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVA----ELLG 307
C+A+C + ++ FE PD T+ ++ Y ++R++D ++LG
Sbjct: 135 CRASCFLGKMMKLGFE----------PDLVTFTSLLNGYCH---WNRIEDAIALFDQILG 181
Query: 308 MMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ---------NYEGGTKVLHN 358
M +PNV TY L+ C K + A+ F + Y L
Sbjct: 182 M------GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCE 235
Query: 359 EGNFGDPLSLYLRALCR---EGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWI 415
G +GD L LR + + E +I ++A K + + + + Y ++ +
Sbjct: 236 IGRWGDAAWL-LRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKEL-----YNVMIQMSV 289
Query: 416 EPLQEEAELGYEIDYIARYISEGGLTGERKRWVPRRGKTPLDPDAVGFIYSNPMETSFKQ 475
P + G I+ + Y GL E ++ + P+ V IY+ + K
Sbjct: 290 YP--DVFTYGSLINGLCMY----GLLDEARQMFYLMERNGCYPNEV--IYTTLIHGFCKS 341
Query: 476 RCLEDGKK 483
+ +EDG K
Sbjct: 342 KRVEDGMK 349
Score = 34.3 bits (77), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 189 LEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNH 248
+EDA +F + G + Y +I CK ++A+E+ +M G +N
Sbjct: 169 IEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNA 228
Query: 249 LLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGM 308
L++ C I A + + + ++P+ T+ +I A+ + ++ + EL +
Sbjct: 229 LVT--GLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKV---GKLMEAKELYNV 283
Query: 309 MVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
M++ + P+V TY L+ Y + EA + F ++
Sbjct: 284 MIQ--MSVYPDVFTYGSLINGLCMYGLLDEARQMFYLME 320
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 129/303 (42%), Gaps = 19/303 (6%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L + R DA R+ + DMI ++P +F L+ A+ G A + +
Sbjct: 301 LCNYGRWSDASRL---LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 357
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAM-EKINYDIRQAWLILVEELVRNKYLEDANK 194
P T +L F + ++ M K + + L++ + K +E+ +
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 417
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
VF ++ GL Y+++I +AGD A EI EM + G +N LL
Sbjct: 418 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 477
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G E A FE ++ + M+P TYN +I+ +A +V+D +L + K
Sbjct: 478 KNGKLEKAMVVFEYLQRSK--MEPTIYTYNIMIEGMCKA---GKVEDGWDLFCNL--SLK 530
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 374
++P+V Y ++ F + + EA F+ ++ E GT L N G + + +RA
Sbjct: 531 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMK--EDGT--LPNSGCY----NTLIRARL 582
Query: 375 REG 377
R+G
Sbjct: 583 RDG 585
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 124/350 (35%), Gaps = 86/350 (24%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M G P +F+ L+ L+ AM + R ++ G +P L
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQP---------------DL 221
Query: 155 ATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
T G+ + ++ + D+ L +E+ G L IY+ +
Sbjct: 222 VTYGVVVNGLCKRGDTDLAFNLLNKMEQ-------------------GKLEPGVLIYNTI 262
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I CK +AL + EME G ++ L+SC G A +M E
Sbjct: 263 IDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI--ER 320
Query: 275 YMKPDTETYNCVIQAYTR------AES--------------------------YDRVQDV 302
+ PD T++ +I A+ + AE +DR+ +
Sbjct: 321 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 380
Query: 303 AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRAL-QNYEGGTKVLHNEGN 361
++ MV H P+V TY L++ F KY V E + FR + Q G V +N
Sbjct: 381 KQMFEFMVSKH--CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN--- 435
Query: 362 FGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLV 411
+ ++ L + G E + M D VPP M Y TL+
Sbjct: 436 ------ILIQGLFQAGDCDMAQEIFKEMVSDG--VPPNIM----TYNTLL 473
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 10/252 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P +F LV + A+ ++R + G +P T A+ +G
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220
Query: 155 ATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
L +L MEK I D+ + +++ L + ++++DA +F G+R Y
Sbjct: 221 PDLALNLLNKMEKGKIEADV-VIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I+ C G S+A + +M FN L+ A G A F+ M
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMI-- 337
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ + P+ TYN +I + +DR+ + ++ +MV K P+V TY L+ F K
Sbjct: 338 QRSIDPNIVTYNSLINGFCM---HDRLDEAQQIFTLMVS--KDCLPDVVTYNTLINGFCK 392
Query: 333 YCAVTEAIRHFR 344
V + + FR
Sbjct: 393 AKKVVDGMELFR 404
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ L +N LE A VF K + Y++M CKAG + ++ + G
Sbjct: 456 LLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG 515
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+N ++S G+ E A+ F M+ ED PD+ TYN +I+A+ R
Sbjct: 516 VKPDVIAYNTMISGFCKKGLKEEAYTLFIKMK--EDGPLPDSGTYNTLIRAHLR 567
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 83/191 (43%), Gaps = 15/191 (7%)
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPE 260
KG + A IY +I CK +AL + EM+ G F ++ L+SC G
Sbjct: 233 KGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWS 292
Query: 261 VAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNV 320
A +M E + P+ T+N +I A+ + ++ + +L M++ + + PN+
Sbjct: 293 DASRLLSDML--ERKINPNVVTFNSLIDAFAKE---GKLIEAEKLFDEMIQ--RSIDPNI 345
Query: 321 KTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 380
TY L+ F + + EA + F + + + V+ + + C+ +++
Sbjct: 346 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVV--------TYNTLINGFCKAKKVV 397
Query: 381 ELLEALEAMAK 391
+ +E M++
Sbjct: 398 DGMELFRDMSR 408
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 106/255 (41%), Gaps = 10/255 (3%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P + + LV L+G AM + + + G +P T + + G
Sbjct: 184 MVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQ 243
Query: 155 ATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
+E+L ME+ N + + I+++ L ++ L++A +F G+ Y++
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNI 303
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG-IPEVAFATFENMEYG 272
+I C AG + ++ +M F+ L+ G + E E + G
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRG 363
Query: 273 EDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ PDT TY +I + + D+ + +L MV K PN++T+ +L+ + K
Sbjct: 364 ---IAPDTITYTSLIDGFCKENHLDKANQMVDL---MVS--KGCDPNIRTFNILINGYCK 415
Query: 333 YCAVTEAIRHFRALQ 347
+ + + FR +
Sbjct: 416 ANRIDDGLELFRKMS 430
Score = 41.2 bits (95), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 46/206 (22%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L++ + +L+ AN++ G ++++I CKA + LE+ +M G
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433
Query: 239 RMATTFHFNHLLSCQATC-------------------------------------GIPEV 261
+A T +N L+ Q C G E
Sbjct: 434 VVADTVTYNTLI--QGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEK 491
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A FE +E + M+ D YN +I A D D+ L + K ++P VK
Sbjct: 492 ALEIFEKIE--KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL-----KGVKPGVK 544
Query: 322 TYALLVECFTKYCAVTEAIRHFRALQ 347
TY +++ K ++EA FR ++
Sbjct: 545 TYNIMIGGLCKKGPLSEAELLFRKME 570
Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 5/206 (2%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ N ++ M++ G P R+F+ L+ Y + + ++ GV T L
Sbjct: 386 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445
Query: 147 RLFGSKGLATKGLEILAAM--EKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGL 204
+ F G E+ M K+ +I + IL++ L N E A ++F + K +
Sbjct: 446 QGFCELGKLNVAKELFQEMVSRKVPPNI-VTYKILLDGLCDNGESEKALEIFEKIEKSKM 504
Query: 205 RATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
IY+++I C A +A ++ + G +N ++ G A
Sbjct: 505 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAEL 564
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAY 290
F ME ED PD TYN +I+A+
Sbjct: 565 LFRKME--EDGHAPDGWTYNILIRAH 588
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG-RMATTFHFNHLLSCQATCGIPEV 261
GL+ I+++++ CK GD + A + EM+ +G + ++ L+ C +
Sbjct: 191 GLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKE 250
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A FE+M ++ + PD T+N +I + RA +R + + + + PNV
Sbjct: 251 AVELFEDM-ISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFM-----KKNGCNPNVY 304
Query: 322 TYALLVECFTKYCAVTEAIRHF 343
Y+ L+ F K + EA + F
Sbjct: 305 NYSALMNGFCKVGKIQEAKQTF 326
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 40/219 (18%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAA-GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRE 130
M+ L H+R+++A ++ DMI+ G+SP P +F+ ++ + G+ E A L
Sbjct: 238 LMDCLFAHSRSKEAV---ELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFM 294
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLE 190
G P AL F G ++
Sbjct: 295 KKNGCNPNVYNYSALMNGFCKVG----------------------------------KIQ 320
Query: 191 DANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+A + F K GL+ Y ++ C+ G+ A+++ EM+A+ A T +N +L
Sbjct: 321 EAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVIL 380
Query: 251 SCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQA 289
++ G E A + ++G + + + +Y ++ A
Sbjct: 381 RGLSSEGRSEEALQMLD--QWGSEGVHLNKGSYRIILNA 417
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 130/330 (39%), Gaps = 45/330 (13%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+ G P +F L+ L+ A+ + R + G +P T + +G
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 155 ATKGLEILAAME--KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYD 212
L +L ME KI D+ + +++ L + ++++DA +F G+R Y
Sbjct: 241 TDLALNLLNKMEAAKIEADV-VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYS 299
Query: 213 LMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYG 272
+I+ C G S+A ++ +M FN L+ + E F E +
Sbjct: 300 SLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF----VKEGKFVEAEKLY-- 353
Query: 273 EDYMK----PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVE 328
+D +K PD TYN ++ + +DR+ ++ MV K P+V TY L++
Sbjct: 354 DDMIKRSIDPDIFTYNSLVNGFCM---HDRLDKAKQMFEFMVS--KDCFPDVVTYNTLIK 408
Query: 329 CFTKYCAVTEAIRHFRALQN---------YEGGTKVLHNEGNF-------------GDP- 365
F K V + FR + + Y + L ++G+ G P
Sbjct: 409 GFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP 468
Query: 366 ----LSLYLRALCREGRIIELLEALEAMAK 391
S+ L LC G++ + LE + M K
Sbjct: 469 DIMTYSILLDGLCNNGKLEKALEVFDYMQK 498
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 12/240 (5%)
Query: 103 GPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEIL 162
G +++ L+ + A+ L + + G P TL +L + + + ++
Sbjct: 119 GLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALV 178
Query: 163 AAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKA 221
M ++ Y + L+ L + +A + R + G + Y +++ CK
Sbjct: 179 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 238
Query: 222 GDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENMEYGEDYMKPD 279
GD AL + +MEAA A FN ++ + C V A F+ ME ++P+
Sbjct: 239 GDTDLALNLLNKMEAAKIEADVVIFNTII--DSLCKYRHVDDALNLFKEME--TKGIRPN 294
Query: 280 TETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEA 339
TY+ +I SY R D ++LL M+E K++ PN+ T+ L++ F K EA
Sbjct: 295 VVTYSSLISCLC---SYGRWSDASQLLSDMIE--KKINPNLVTFNALIDAFVKEGKFVEA 349
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ IL++ L N LE A +VF K ++ IY MI CKAG + ++
Sbjct: 471 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 530
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
+ G +N ++S + + + A+A + M+ ED P++ TYN +I+A+ R
Sbjct: 531 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK--EDGPLPNSGTYNTLIRAHLR 587
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 142/341 (41%), Gaps = 35/341 (10%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M++ GLS +++ L+ Y NG + A LK LS G + ++ L S +
Sbjct: 404 MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLM 463
Query: 155 ATKGLEILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
L + M N L L+ L ++ A +++ + G +
Sbjct: 464 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 523
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV--AFATFENMEY 271
++ C+AG A I E+ G + +N L+S CG ++ AF + M
Sbjct: 524 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS--GCCGKKKLDEAFMFLDEMV- 580
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR--LQPNVKTYALLVEC 329
+ +KPD TY+ +I + ++V++ + +D KR + P+V TY+++++
Sbjct: 581 -KRGLKPDNYTYSILICGLF---NMNKVEEAIQFW----DDCKRNGMLPDVYTYSVMIDG 632
Query: 330 FTKYCAVTEAIRHFRAL--QNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
K E F + +N + T V++N +RA CR GR+ LE E
Sbjct: 633 CCKAERTEEGQEFFDEMMSKNVQPNT-VVYNH---------LIRAYCRSGRLSMALELRE 682
Query: 388 AMAKDNQPVPPRAMILSRKYRTLVSSW-IEPLQEEAELGYE 427
M ++ + P S Y +L+ I EEA+L +E
Sbjct: 683 DM--KHKGISPN----SATYTSLIKGMSIISRVEEAKLLFE 717
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 178 ILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED--CKAGDHSNALEIAYEME 235
IL+ LVR + + F KG + ++Y A + CK G A+++ +ME
Sbjct: 244 ILLTSLVRANEFQKCCEAFDVVCKG---VSPDVYLFTTAINAFCKGGKVEEAVKLFSKME 300
Query: 236 AAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAES 295
AG FN ++ CG + AF E M E M+P TY+ +++ TRA+
Sbjct: 301 EAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMV--ERGMEPTLITYSILVKGLTRAK- 357
Query: 296 YDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
R+ D +L M + K PNV Y L++ F + ++ +AI
Sbjct: 358 --RIGDAYFVLKEMTK--KGFPPNVIVYNNLIDSFIEAGSLNKAI 398
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 7/162 (4%)
Query: 93 YDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSK 152
+D++ G+SP F + A+ G E A+ + AGV P ++ +
Sbjct: 262 FDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAP---NVVTFNTVIDGL 318
Query: 153 GLATKGLEILAAMEKINYDIRQAWLI----LVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G+ + E EK+ + LI LV+ L R K + DA V K G
Sbjct: 319 GMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNV 378
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL 250
+Y+ +I +AG + A+EI M + G T+ +N L+
Sbjct: 379 IVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 420
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 9/168 (5%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ ++++ + + E+ + F ++ +Y+ +I C++G S ALE+ +M
Sbjct: 625 TYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM 684
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G + + L+ + E A FE M + ++P+ Y +I Y +
Sbjct: 685 KHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRM--EGLEPNVFHYTALIDGYGKLG 742
Query: 295 SYDRVQDVAELLGMMVEDH-KRLQPNVKTYALLVECFTKYCAVTEAIR 341
+V+ ++ E H K + PN TY +++ + + VTEA R
Sbjct: 743 QMVKVE------CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASR 784
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 7/158 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ IL+ L +E+A + + + G+ Y +MI CKA E EM
Sbjct: 590 TYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEM 649
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ T +NHL+ G +A E+M++ + P++ TY +I+ +
Sbjct: 650 MSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG--ISPNSATYTSLIKGMSIIS 707
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
+ + + E + M + L+PNV Y L++ + K
Sbjct: 708 RVEEAKLLFEEMRM-----EGLEPNVFHYTALIDGYGK 740
>sp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580,
mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2
SV=1
Length = 405
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 11/205 (5%)
Query: 121 EGAMHSLKRELSAGVRPLHETLIALARLFGS-KGLATKGLEILAAMEKIN-YDIRQAWLI 178
E M ++K L R E L R++G+ G + +EIL M + +++
Sbjct: 115 EEVMRTIK--LEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFGMPDFGCWPSSKSFNF 172
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
++ LV K ++ +K+F+ K G+ +++I C++G+ AL++ E
Sbjct: 173 ILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQK 232
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
F+ L+ G E AF E ME ++ ++PDT T+N +I + R
Sbjct: 233 SRPNVMTFSPLIRGFCNKGKFEEAFKLLERME--KERIEPDTITFNILISGLRKK---GR 287
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTY 323
V++ +LL M K +PN TY
Sbjct: 288 VEEGIDLLERM--KVKGCEPNPGTY 310
>sp|Q84J46|PP262_ARATH Pentatricopeptide repeat-containing protein At3g29290
OS=Arabidopsis thaliana GN=EMB2076 PE=2 SV=1
Length = 540
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 108/239 (45%), Gaps = 20/239 (8%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
DV +M+ +S + + ++ A T + A+ + L G++P L+A L
Sbjct: 270 DVYDEMVNNKISLREDAMYAMISACTKEEKWDLALKIFQSMLKKGMKP---NLVACNTLI 326
Query: 150 GSKGLATK-GL--EILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
S G A K GL ++ + ++ + + + W L+ L + ED ++F L
Sbjct: 327 NSLGKAGKVGLVFKVYSVLKSLGHKPDEYTWNALLTALYKANRYEDVLQLFDMIRSENLC 386
Query: 206 ATDE-IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFA 264
+E +Y+ + K G A+++ YEME +G +T +N ++S +VA
Sbjct: 387 CLNEYLYNTAMVSCQKLGYWEKAVKLLYEMEGSGLTVSTSSYNLVISACEKSRKSKVALL 446
Query: 265 TFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTY 323
+E+M + KP+T TY ++++ +D V+D+ K+++P+V Y
Sbjct: 447 VYEHM--AQRDCKPNTFTYLSLVRSCIWGSLWDEVEDIL----------KKVEPDVSLY 493
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 11/241 (4%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELS-AGVRPLHETLIALARL 148
DV+ M P ++ L+ A++ +H M +L +++ G P L R
Sbjct: 154 DVVQMMRKFKFRPAFSAYTTLIGAFSAV-NHSDMMLTLFQQMQELGYEPTVHLFTTLIRG 212
Query: 149 FGSKGLATKGLEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
F +G L +L M+ + D + + ++ + ++ A K F GL+
Sbjct: 213 FAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPD 272
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
+ Y MI CKA A+E+ +E R+ T+ +N ++ + G + A++ E
Sbjct: 273 EVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
P YNC++ + D V E E K PN+ TY +L+
Sbjct: 333 RQRAKGSI--PSVIAYNCILTCLRKMGKVDEALKVFE------EMKKDAAPNLSTYNILI 384
Query: 328 E 328
+
Sbjct: 385 D 385
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 84/434 (19%), Positives = 158/434 (36%), Gaps = 35/434 (8%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L+ AR R+ ++ ++ +M AG P + +V+ ++
Sbjct: 105 LLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKF 164
Query: 136 RPLHETLIALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANK 194
RP L F + + L + M+++ Y+ + L+ + ++ A
Sbjct: 165 RPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALS 224
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+ L A +Y++ I K G A + +E+EA G + ++
Sbjct: 225 LLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLC 284
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
+ A FE++E ++ P T YN +I Y A +D + E + K
Sbjct: 285 KANRLDEAVEMFEHLE--KNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER-----QRAK 337
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALC 374
P+V Y ++ C K V EA++ F ++ +N + + LC
Sbjct: 338 GSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYN---------ILIDMLC 388
Query: 375 REGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDY---- 430
R G++ E ++M K + P ++ L S + L E + E+DY
Sbjct: 389 RAGKLDTAFELRDSMQK--AGLFPNVRTVNIMVDRLCKS--QKLDEACAMFEEMDYKVCT 444
Query: 431 -----IARYISEGGLTGERKRWVPRRGKTPLDPDA--VGFIYSNPMETSFKQRCLEDGKK 483
I G G R + + LD D +Y++ ++ F EDG K
Sbjct: 445 PDEITFCSLIDGLGKVG-RVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHK 503
Query: 484 YHRKLLRTLQNEGP 497
++ ++ QN P
Sbjct: 504 IYKDMIN--QNCSP 515
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 111/267 (41%), Gaps = 25/267 (9%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+++ IL+ L++ + + ++F + G Y+++I CK G + A ++ E
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE 612
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
M+ G T + ++ A + A+ FE E ++ + Y+ +I + +
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFE--EAKSKRIELNVVIYSSLIDGFGKV 670
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGT 353
D + E L K L PN+ T+ L++ K + EA+ F++++
Sbjct: 671 GRIDEAYLILEELM-----QKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKE----L 721
Query: 354 KVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMILSRKYRTLVSS 413
K N+ +G + + LC+ + + + M K Q + P + Y T++S
Sbjct: 722 KCTPNQVTYG----ILINGLCKVRKFNKAFVFWQEMQK--QGMKPSTI----SYTTMISG 771
Query: 414 WIEPLQEEAELGYEIDYIARYISEGGL 440
+ AE G D R+ + GG+
Sbjct: 772 -LAKAGNIAEAGALFD---RFKANGGV 794
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 81/180 (45%), Gaps = 8/180 (4%)
Query: 169 NYDIRQ-AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNA 227
NY R + +++ R+ +++ A +F K + E YD +I +AG A
Sbjct: 138 NYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWA 197
Query: 228 LEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI 287
+ + +M A + +N+L++ + G A + M ++ + PD T+N V+
Sbjct: 198 MNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMT--DNGVGPDLVTHNIVL 255
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
AY Y + EL+ +++P+ T+ +++ C +K ++A+ F +++
Sbjct: 256 SAYKSGRQYSKALSYFELM-----KGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMR 310
Score = 39.7 bits (91), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 82/209 (39%), Gaps = 15/209 (7%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M+A GL P S++ L+ AY ++G A+ L G+ P + L +G
Sbjct: 346 MVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQ 405
Query: 155 ATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
K E+ M K + Y+ L++ N +L +A ++F + + G++
Sbjct: 406 PGKAKEVFLMMRKERRKPNVVTYN------ALIDAYGSNGFLAEAVEIFRQMEQDGIKPN 459
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
++A ++ N + ++ G T +N + E A A ++
Sbjct: 460 VVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQ 519
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESY 296
+M + +K D+ T+ +I R Y
Sbjct: 520 SMR--KKKVKADSVTFTILISGSCRMSKY 546
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 108/261 (41%), Gaps = 47/261 (18%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP---LHETLIALAR 147
++ D + G P ++ L+ G+ A+ L G++P L+ TLI
Sbjct: 343 IVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI---- 398
Query: 148 LFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRAT 207
KGL+ +G+ + AA + AN++ ++ GL
Sbjct: 399 ----KGLSNQGMILEAA-------------------------QLANEM----SEKGLIPE 425
Query: 208 DEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFE 267
+ +++++ CK G S+A + M + G F FN L+ +T E A +
Sbjct: 426 VQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILD 485
Query: 268 NMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
M ++ + PD TYN ++ + + +DV E MVE K PN+ T+ +L+
Sbjct: 486 VML--DNGVDPDVYTYNSLLNGLCKTSKF---EDVMETYKTMVE--KGCAPNLFTFNILL 538
Query: 328 ECFTKYCAVTEAIRHFRALQN 348
E +Y + EA+ ++N
Sbjct: 539 ESLCRYRKLDEALGLLEEMKN 559
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 143/369 (38%), Gaps = 62/369 (16%)
Query: 65 EQG-LRLIFMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGA 123
EQG L + L ++ + A R+ + + A G +F L+ AY +G HE A
Sbjct: 231 EQGKLASAMISTLGRYGKVTIAKRIFETAF---AGGYGNTVYAFSALISAYGRSGLHEEA 287
Query: 124 MHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL-EILAAMEK-------INYD---- 171
+ G+RP T A+ G G+ K + + M++ I ++
Sbjct: 288 ISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLA 347
Query: 172 ------IRQAWLILVEELVRNKYLEDA---NKVFLRGAKGG-LRATDEI----------- 210
+ +A L +E+ + +D N + KGG + EI
Sbjct: 348 VCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMP 407
Query: 211 ----YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATF 266
Y +I KAG AL + EM G +N LLS G E A
Sbjct: 408 NVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDIL 467
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
M +K D TYN ++ Y + YD V+ V M +H + PN+ TY+ L
Sbjct: 468 REM--ASVGIKKDVVTYNALLGGYGKQGKYDEVKKV---FTEMKREH--VLPNLLTYSTL 520
Query: 327 VECFTKYCAVTEAIRHFRALQNYEGGTK---VLHNEGNFGDPLSLYLRALCREGRIIELL 383
++ ++K EA+ FR ++ G + VL+ S + ALC+ G + +
Sbjct: 521 IDGYSKGGLYKEAMEIFREFKS--AGLRADVVLY---------SALIDALCKNGLVGSAV 569
Query: 384 EALEAMAKD 392
++ M K+
Sbjct: 570 SLIDEMTKE 578
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 107/240 (44%), Gaps = 16/240 (6%)
Query: 106 SFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAM 165
S++ L+ YT G E A+ L+ S G++ T AL +G +G + ++ M
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM 505
Query: 166 EKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
++ + + L++ + ++A ++F GLRA +Y +I CK G
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLV 565
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA--FATFENMEYGEDYMKPDTET 282
+A+ + EM G +N ++ + + ++ ++ + + TET
Sbjct: 566 GSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTET 625
Query: 283 -YNCVIQAYTR--AESYDR--------VQDVAELLGMMVEDHK-RLQPNVKTY-ALLVEC 329
N VIQ + + ES +R +Q+++ +L + + H+ ++PNV T+ A+L C
Sbjct: 626 EGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNAC 685
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 16/223 (7%)
Query: 131 LSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRNKYL 189
+S G+ P L + +GL +K ++L M + + I + +L R+ +
Sbjct: 191 ISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKM 250
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
E+A K+F K G+ Y MI CK G+ A + E+ A + F L
Sbjct: 251 EEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTL 310
Query: 250 LSCQATCGIPEVAFA--TFENM-EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELL 306
+ C E+ A F +M ++G D P+ YNC+I + ++ ++ E +
Sbjct: 311 V--DGFCKARELVTARSLFVHMVKFGVD---PNLYVYNCLIHGHCKS------GNMLEAV 359
Query: 307 GMMVE-DHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
G++ E + L P+V TY +L+ V EA R F+ ++N
Sbjct: 360 GLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKN 402
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LV+ + + L A +F+ K G+ +Y+ +I CK+G+ A+ + EME+
Sbjct: 310 LVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLN 369
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFAT--FENMEYGEDYMKPDTETYNCVIQAYTRAESY 296
F + L++ C +VA A F+ M+ + + P + TYN +I Y + +
Sbjct: 370 LSPDVFTYTILIN--GLCIEDQVAEANRLFQKMK--NERIFPSSATYNSLIHGYCKEYNM 425
Query: 297 DRVQDV-AELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
++ D+ +E+ VE PN+ T++ L++ YC V
Sbjct: 426 EQALDLCSEMTASGVE------PNIITFSTLID---GYCNV 457
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 30/295 (10%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
+++ A L P F LV + + A + GV P L G
Sbjct: 294 EILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSG 353
Query: 154 LATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
+ + +L+ ME +N D+ + IL+ L + +AN++F + + + Y
Sbjct: 354 NMLEAVGLLSEMESLNLSPDVF-TYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATY 412
Query: 212 DLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEY 271
+ +I CK + AL++ EM A+G F+ L+ C + ++ A E
Sbjct: 413 NSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLI--DGYCNVRDIKAAMGLYFEM 470
Query: 272 GEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFT 331
+ PD TY +I A+ + + +++ L M+E + PN T+A LV+ F
Sbjct: 471 TIKGIVPDVVTYTALIDAHFKEAN---MKEALRLYSDMLE--AGIHPNDHTFACLVDGFW 525
Query: 332 KYCAVTEAIRHF------RALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRII 380
K ++ AI + R+ N+ G T ++ EG LC+ G I+
Sbjct: 526 KEGRLSVAIDFYQENNQQRSCWNHVGFTCLI--EG------------LCQNGYIL 566
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 134/319 (42%), Gaps = 18/319 (5%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSA-G 134
L+++ + +V DM+ G+S ++F+ LV Y L G E A+ L+R +S
Sbjct: 176 LVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFK 235
Query: 135 VRPLHETLIALARLFGSKGLATKGLEILAAMEKINY-DIRQAWLILVEELVRNKYLEDAN 193
V P + T + + KG + E+L M+K R + LV + L++A
Sbjct: 236 VNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAF 295
Query: 194 KVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQ 253
++ + + Y+++I C AG LE+ M++ +N L+
Sbjct: 296 QIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGC 355
Query: 254 ATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRV-QDVAELLGMMVED 312
G+ A E ME D +K + T+N ++ + E + V + V EL+ D
Sbjct: 356 FELGLSLEARKLMEQME--NDGVKANQVTHNISLKWLCKEEKREAVTRKVKELV-----D 408
Query: 313 HKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRA 372
P++ TY L++ + K ++ A+ R + G + N L+ L A
Sbjct: 409 MHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREM----GQKGIKMNTIT----LNTILDA 460
Query: 373 LCREGRIIELLEALEAMAK 391
LC+E ++ E L + K
Sbjct: 461 LCKERKLDEAHNLLNSAHK 479
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 129/348 (37%), Gaps = 63/348 (18%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G SP ++H L+ AY GD GA+ + R G KG+
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGDLSGALE-------------------MMREMGQKGIK--- 448
Query: 159 LEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAED 218
M I + +++ L + + L++A+ + K G + Y +I
Sbjct: 449 ------MNTITLNT------ILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGF 496
Query: 219 CKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKP 278
+ ALE+ EM+ T FN L+ G E+A F+ E E + P
Sbjct: 497 FREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFD--ELAESGLLP 554
Query: 279 DTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
D T+N +I Y + RV+ E ++ +P+ T +L+ K +
Sbjct: 555 DDSTFNSIILGYCKE---GRVEKAFEFYNESIK--HSFKPDNYTCNILLNGLCKEGMTEK 609
Query: 339 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPP 398
A+ F L V +N + A C++ ++ E + L M + + + P
Sbjct: 610 ALNFFNTLIEEREVDTVTYNT---------MISAFCKDKKLKEAYDLLSEM--EEKGLEP 658
Query: 399 RAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYISEGGLTGERKR 446
R +S+I L E+ +L E D + + S G G KR
Sbjct: 659 D--------RFTYNSFISLLMEDGKLS-ETDELLKKFS--GKFGSMKR 695
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 43/240 (17%)
Query: 144 ALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAKG 202
AL + FG G+ + L + M++ + + L+ LV +++ A +VF G
Sbjct: 192 ALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESG 251
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL-SCQA-----TC 256
++ Y+ MI CKAG A+E +ME G A + ++ +C A +C
Sbjct: 252 RIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSC 311
Query: 257 ------------GIPEVAFA-----------------TFENMEYGEDYMKPDTETYNCVI 287
+P AF+ FENM KP+ Y +I
Sbjct: 312 VALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGS--KPNVAIYTVLI 369
Query: 288 QAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
Y ++ S V+D LL M+++ +P+V TY+++V K V EA+ +F +
Sbjct: 370 DGYAKSGS---VEDAIRLLHRMIDEG--FKPDVVTYSVVVNGLCKNGRVEEALDYFHTCR 424
Score = 33.9 bits (76), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 107/313 (34%), Gaps = 57/313 (18%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
V +MI G P + L+ Y +G E A+ L R + G +P
Sbjct: 349 VFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP------------- 395
Query: 151 SKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEI 210
+ + Y + +V L +N +E+A F GL
Sbjct: 396 ---------------DVVTYSV------VVNGLCKNGRVEEALDYFHTCRFDGLAINSMF 434
Query: 211 YDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENME 270
Y +I KAG A + EM G ++ +N L+ + A A F+ ME
Sbjct: 435 YSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRME 494
Query: 271 YGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECF 330
E+ TY ++ + R ++ +L MM++ K + P + L
Sbjct: 495 -EEEGCDQTVYTYTILLSGMFKEH---RNEEALKLWDMMID--KGITPTAACFRALS--- 545
Query: 331 TKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSL----YLRALCREGRIIELLEAL 386
T C + R K+L G L + LC+ GRI E +
Sbjct: 546 TGLCLSGKVAR----------ACKILDELAPMGVILDAACEDMINTLCKAGRIKEACKLA 595
Query: 387 EAMAKDNQPVPPR 399
+ + + + VP R
Sbjct: 596 DGITERGREVPGR 608
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 96/251 (38%), Gaps = 43/251 (17%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFG 150
++ +M G+SP ++ L+ AY G E A LK + V+P L F
Sbjct: 361 MVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFR 420
Query: 151 SKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
+G K ++L M+ I RQ + ++++ + L+ A F R G+
Sbjct: 421 DRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRV 480
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM 269
++ +I CK G H A E+ ME G +
Sbjct: 481 TWNTLIDCHCKHGRHIVAEEMFEAMERRGCL----------------------------- 511
Query: 270 EYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVEC 329
P TYN +I +Y E +D D+ LLG M + + PNV T+ LV+
Sbjct: 512 --------PCATTYNIMINSYGDQERWD---DMKRLLGKM--KSQGILPNVVTHTTLVDV 558
Query: 330 FTKYCAVTEAI 340
+ K +AI
Sbjct: 559 YGKSGRFNDAI 569
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 8/239 (3%)
Query: 110 LVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
+++ + +GD A+ L + G+ TL+++ G + + + +
Sbjct: 275 IIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSG 334
Query: 170 YDIR-QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNAL 228
R +A+ L++ V+ L+DA + K G+ + Y L+I AG +A
Sbjct: 335 IKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESAR 394
Query: 229 EIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288
+ EMEA +F F+ LL+ G + F + M+ +KPD + YN VI
Sbjct: 395 IVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK--SIGVKPDRQFYNVVID 452
Query: 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
+ + D + M+ E ++P+ T+ L++C K+ A F A++
Sbjct: 453 TFGKFNCLDHAMTTFD--RMLSEG---IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAME 506
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 100/253 (39%), Gaps = 36/253 (14%)
Query: 91 VIYDMIAAGLSPGPRSFHGLVV-AYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
V+ +M + G+ P R F+ +V+ + + AM + R LS G+ P T L
Sbjct: 431 VLKEMKSIGVKPD-RQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 489
Query: 150 GSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G E+ AME+ + I++ + +D ++ + G+
Sbjct: 490 CKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 549
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
+ ++ K+G ++A+E EM++ G ++ +N L++ A G+ E A F
Sbjct: 550 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 609
Query: 269 ME-----------------YGED-----------YMK-----PDTETYNCVIQAYTRAES 295
M +GED YMK PD TY +++A R +
Sbjct: 610 MTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDK 669
Query: 296 YDRVQDVAELLGM 308
+ +V V E + M
Sbjct: 670 FQKVPVVYEEMIM 682
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 87 RVNDVIY---DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLI 143
R ND I +M + GL P ++ L+ AY G E A+++ + S G++P +L+
Sbjct: 564 RFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKP---SLL 620
Query: 144 ALARLFGSKGLATKGLEILAAME 166
AL L + G + E A ++
Sbjct: 621 ALNSLINAFGEDRRDAEAFAVLQ 643
>sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520,
mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2
SV=1
Length = 766
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + L+ L + + DA +V + +GG Y+++I C + E+ +
Sbjct: 512 KIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTD 571
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNCVIQAYT 291
ME G+ + +N L+S F + E M + ED + P TY VI AY
Sbjct: 572 MEKEGKKPDSITYNTLISFFG----KHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYC 627
Query: 292 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
D + + +G+ H ++ PN Y +L+ F+K +A+
Sbjct: 628 SVGELDEALKLFKDMGL----HSKVNPNTVIYNILINAFSKLGNFGQAL 672
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 117/284 (41%), Gaps = 28/284 (9%)
Query: 101 SPGPRSFHGLVVAYTLNGDHEGAMHSLKR----ELSAGVRPLHETLIALARLFGSKGLAT 156
+P +++ L+ Y G E A + R E+ V ++ + + R G
Sbjct: 403 APNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHG----LN 458
Query: 157 KGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
+ MEK + ++ ++ L+ +E A + + + G +IY +
Sbjct: 459 MAVVFFMDMEKEGVKGNV-VTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYAL 517
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I+ C+ +A+ + +++ G +N L+ E + +ME ++
Sbjct: 518 ISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDME--KE 575
Query: 275 YMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYC 334
KPD+ TYN +I + + + ++ V+ + E M ED L P V TY +++ +
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMME---QMREDG--LDPTVTTYGAVIDAYCSVG 630
Query: 335 AVTEAIRHFR--ALQNYEGGTKVLHN--------EGNFGDPLSL 368
+ EA++ F+ L + V++N GNFG LSL
Sbjct: 631 ELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSL 674
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 32/230 (13%)
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIRQ--AWLIL------------------ 179
E +IAL F S G++ + + + + + R AW IL
Sbjct: 241 EKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNAL 300
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA-- 237
+ L RN + N + L+ + +R ++I CK+ ALE+ +M
Sbjct: 301 LSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEKMRGKRT 360
Query: 238 --GRM--ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
G + A + HFN L+ G + A M+ E+ P+ TYNC+I Y RA
Sbjct: 361 DDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKL-EERCAPNAVTYNCLIDGYCRA 419
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+++ E++ M ED ++PNV T +V ++ + A+ F
Sbjct: 420 ---GKLETAKEVVSRMKEDE--IKPNVVTVNTIVGGMCRHHGLNMAVVFF 464
>sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460
OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
Length = 766
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 174 QAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYE 233
+ + L+ L + + DA +V + +GG Y+++I C + E+ +
Sbjct: 512 KIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTD 571
Query: 234 MEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENM--EYGEDYMKPDTETYNCVIQAYT 291
ME G+ + +N L+S F + E M + ED + P TY VI AY
Sbjct: 572 MEKEGKKPDSITYNTLISFFG----KHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYC 627
Query: 292 RAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAI 340
D + + +G+ H ++ PN Y +L+ F+K +A+
Sbjct: 628 SVGELDEALKLFKDMGL----HSKVNPNTVIYNILINAFSKLGNFGQAL 672
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 88/204 (43%), Gaps = 17/204 (8%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
++ L+ +E A + + + G +IY +I+ C+ +A+ + ++
Sbjct: 478 TYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKL 537
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
+ G +N L+ E + +ME ++ KPD+ TYN +I + + +
Sbjct: 538 KEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDME--KEGKKPDSITYNTLISFFGKHK 595
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR--ALQNYEGG 352
++ V+ + E M ED L P V TY +++ + + EA++ F+ L +
Sbjct: 596 DFESVERMME---QMREDG--LDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNP 650
Query: 353 TKVLHN--------EGNFGDPLSL 368
V++N GNFG LSL
Sbjct: 651 NTVIYNILINAFSKLGNFGQALSL 674
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 32/230 (13%)
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIR--QAWLIL------------------ 179
E +IAL F S G++ + + + + + R AW IL
Sbjct: 241 EKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNAL 300
Query: 180 VEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAA-- 237
+ L RN + N + L+ + +R ++I CK+ ALE+ +M
Sbjct: 301 LSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRT 360
Query: 238 --GRM--ATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRA 293
G + A + HFN L+ G + A M+ E+ P+ TYNC+I Y RA
Sbjct: 361 DDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVRMKL-EERCVPNAVTYNCLIDGYCRA 419
Query: 294 ESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
+++ E++ M ED ++PNV T +V ++ + A+ F
Sbjct: 420 ---GKLETAKEVVSRMKEDE--IKPNVVTVNTIVGGMCRHHGLNMAVVFF 464
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2
Length = 1440
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 109/261 (41%), Gaps = 8/261 (3%)
Query: 87 RVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALA 146
+ V+ ++ +G +P ++++ L+ AY G +E A + G P E++ L
Sbjct: 770 KAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILL 829
Query: 147 RLFGSKGLATKGLEILAAMEKINYDI-RQAWLILVEELVRNKYLEDANKVFLRGAKGGLR 205
G + ++ ++ + + I + + L++++ R + + K++ G
Sbjct: 830 HALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYL 889
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
T +Y +MI CK +A + EME A +N +L +
Sbjct: 890 PTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQV 949
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
++ ++ E ++PD TYN +I Y R DR + LL M + L P + TY
Sbjct: 950 YQRIK--ETGLEPDETTYNTLIIMYCR----DRRPEEGYLL-MQQMRNLGLDPKLDTYKS 1002
Query: 326 LVECFTKYCAVTEAIRHFRAL 346
L+ F K + +A + F L
Sbjct: 1003 LISAFGKQKCLEQAEQLFEEL 1023
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG--IPEVAFATF 266
++Y+ M+ ++G S A E+ M G + FN L++ + G P +A
Sbjct: 226 QVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELL 285
Query: 267 ENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALL 326
+ + ++PD TYN ++ A +R + D V E + E H R QP++ TY +
Sbjct: 286 DMVR--NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDM----EAH-RCQPDLWTYNAM 338
Query: 327 VECFTKYCAVTEAIRHFRALQ 347
+ + + EA R F L+
Sbjct: 339 ISVYGRCGLAAEAERLFMELE 359
Score = 40.8 bits (94), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GLR Y+ +++ + + A+++ +MEA + +N ++S CG+ A
Sbjct: 292 GLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
F +E + PD TYN ++ A+ R + ++V++V + + M + T
Sbjct: 352 ERLFMELELKGFF--PDAVTYNSLLYAFARERNTEKVKEVYQQMQKM-----GFGKDEMT 404
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYEG 351
Y ++ + K + A++ ++ ++ G
Sbjct: 405 YNTIIHMYGKQGQLDLALQLYKDMKGLSG 433
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 7/221 (3%)
Query: 86 PRVNDVIYDMI-AAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA 144
P + + DM+ +GL P +++ L+ A + + + +GA+ + + +P T A
Sbjct: 278 PNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNA 337
Query: 145 LARLFGSKGLATKGLEILAAME-KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGG 203
+ ++G GLA + + +E K + + L+ R + E +V+ + K G
Sbjct: 338 MISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMG 397
Query: 204 LRATDEIYDLMIAEDCKAGDHSNALEIAYEMEA-AGRMATTFHFNHLLSCQATCG-IPEV 261
+ Y+ +I K G AL++ +M+ +GR + L+ E
Sbjct: 398 FGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEA 457
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDV 302
A E ++ G +KP +TY+ +I Y +A + +D
Sbjct: 458 AALMSEMLDVG---IKPTLQTYSALICGYAKAGKREEAEDT 495
Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 109/281 (38%), Gaps = 19/281 (6%)
Query: 113 AYTLNGDHEGA---MHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKIN 169
+Y+ +G H A + LK S R + E LI L + A +
Sbjct: 618 SYSSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWC 677
Query: 170 YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALE 229
+ + L+ V N++ +A++VF G A++ + M+ CK G A +
Sbjct: 678 FGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQ 737
Query: 230 IAYEMEAAG-RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQ 288
+ + E G A + + ++ + + A + N+ + PD +T+N ++
Sbjct: 738 VVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLR--QSGRTPDLKTWNSLMS 795
Query: 289 AYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQN 348
AY + Y+R + + M+ D P V++ +L+ + E LQ+
Sbjct: 796 AYAQCGCYERARAI---FNTMMRDGP--SPTVESINILLHALCVDGRLEELYVVVEELQD 850
Query: 349 YEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAM 389
G K+ + + L L A R G I E+ + +M
Sbjct: 851 M--GFKISKSS------ILLMLDAFARAGNIFEVKKIYSSM 883
Score = 33.9 bits (76), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 54/291 (18%), Positives = 123/291 (42%), Gaps = 31/291 (10%)
Query: 123 AMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAAMEKINYD----IRQAWLI 178
A LK ++ G ++TL+++ + S G ++ E+L +++ I +A ++
Sbjct: 593 AARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFELLEFLKEHASGSKRLITEALIV 652
Query: 179 L---VEEL--VRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH-SNALEIAY 232
L V L ++Y D G + +Y+ ++ C A +H + A ++
Sbjct: 653 LHCKVNNLSAALDEYFADP------CVHGWCFGSSTMYETLL-HCCVANEHYAEASQVFS 705
Query: 233 EMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTR 292
++ +G A+ ++ G PE A E + + + Y +I+AY +
Sbjct: 706 DLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAE-TKGFHFACSPMYTDIIEAYGK 764
Query: 293 AESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGG 352
+ + + + V +G + + + P++KT+ L+ + + C E R +G
Sbjct: 765 QKLWQKAESV---VGNLRQSGR--TPDLKTWNSLMSAYAQ-CGCYERARAIFNTMMRDGP 818
Query: 353 TKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAMIL 403
+ + + +++ L ALC +GR+ EL +E + + +++L
Sbjct: 819 SPTV-------ESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILL 862
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
L+ L+ ++A+ +F + G + + Y ++ + + L + ++E G
Sbjct: 325 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 384
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
T FN +++ + G + A FE M+ E KP T+N +I+ Y + +
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMK--ESGCKPTASTFNTLIKGYGKI---GK 439
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNY 349
+++ + LL MM+ D + LQPN +T +LV+ + + EA +Q+Y
Sbjct: 440 LEESSRLLDMMLRD-EMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSY 489
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 44/210 (20%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
+ LV L R K+ + + K GL+ +++ +I ++G+ A++I +M
Sbjct: 356 TYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKM 415
Query: 235 EAAGRMATTFHFNHLL------------------------------SC----QATCG--- 257
+ +G T FN L+ +C QA C
Sbjct: 416 KESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRK 475
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
I E ++ YG +KPD T+N + +AY R S +D+ ++ M+ H +++
Sbjct: 476 IEEAWNIVYKMQSYG---VKPDVVTFNTLAKAYARIGSTCTAEDM--IIPRML--HNKVK 528
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRALQ 347
PNV+T +V + + + EA+R F ++
Sbjct: 529 PNVRTCGTIVNGYCEEGKMEEALRFFYRMK 558
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 3/145 (2%)
Query: 92 IYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGS 151
Y M G+ P F+ L+ + D +G + GV+P T L + S
Sbjct: 554 FYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSS 613
Query: 152 KGLATKGLEILAAMEK--INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDE 209
G + EI M + I+ DI A+ IL + R E A ++ + K G+R
Sbjct: 614 VGDMKRCEEIYTDMLEGGIDPDI-HAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVV 672
Query: 210 IYDLMIAEDCKAGDHSNALEIAYEM 234
IY +I+ C AG+ A+++ +M
Sbjct: 673 IYTQIISGWCSAGEMKKAMQVYKKM 697
Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 105/254 (41%), Gaps = 17/254 (6%)
Query: 100 LSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGL 159
L P R+ + LV A+ E A + + + S GV+P T LA+ + G
Sbjct: 456 LQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAE 515
Query: 160 EILAA---MEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIA 216
+++ K+ ++R I V +E+A + F R + G+ +++ +I
Sbjct: 516 DMIIPRMLHNKVKPNVRTCGTI-VNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIK 574
Query: 217 EDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYM 276
D E+ ME G F+ L++ ++ G + + +M G +
Sbjct: 575 GFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGG--I 632
Query: 277 KPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAV 336
PD ++ + + Y RA ++ + ++L M + R PNV Y ++ + +C+
Sbjct: 633 DPDIHAFSILAKGYARAGEPEKAE---QILNQMRKFGVR--PNVVIYTQII---SGWCSA 684
Query: 337 TEAIRHFRALQNYE 350
E +A+Q Y+
Sbjct: 685 GEMK---KAMQVYK 695
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 131/328 (39%), Gaps = 64/328 (19%)
Query: 105 RSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKGLEILAA 164
R++ ++ AY+ G +E A+ +R G P T + +FG G + + +IL
Sbjct: 211 RAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWR--KILGV 268
Query: 165 MEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDH 224
++++ R+K GL+ + +++ + G
Sbjct: 269 LDEM----------------RSK---------------GLKFDEFTCSTVLSACAREGLL 297
Query: 225 SNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYN 284
A E E+++ G T +N LL G+ A + + ME E+ D+ TYN
Sbjct: 298 REAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME--ENSCPADSVTYN 355
Query: 285 CVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHFR 344
++ AY RA V E++ K + PN TY +++ + K EA++ F
Sbjct: 356 ELVAAYVRAGFSKEAAGVIEMM-----TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFY 410
Query: 345 ALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDNQPVPPRAM--- 401
+++ E G + N + LSL L ++ R E+++ L M K N P RA
Sbjct: 411 SMK--EAG--CVPNTCTYNAVLSL----LGKKSRSNEMIKMLCDM-KSNGCSPNRATWNT 461
Query: 402 ------------ILSRKYRTLVSSWIEP 417
++R +R + S EP
Sbjct: 462 MLALCGNKGMDKFVNRVFREMKSCGFEP 489
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 21/255 (8%)
Query: 87 RVNDVI---YDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL-SAGVRPLHETL 142
R N++I DM + G SP R+ ++A N + ++ + RE+ S G P +T
Sbjct: 436 RSNEMIKMLCDMKSNGCSPN-RATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTF 494
Query: 143 IALARLFGSKGLATKGLEILAAMEKINYD-IRQAWLILVEELVRNKYLEDANKVFLRGAK 201
L +G G ++ M + ++ + L+ L R V
Sbjct: 495 NTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKS 554
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLL----SCQATCG 257
G + T+ Y LM+ K G++ I ++ + LL C+A G
Sbjct: 555 KGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAG 614
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
E AF F+ Y KPD +N ++ +TR YD+ + + E + ED L
Sbjct: 615 -SERAFTLFKKHGY-----KPDMVIFNSMLSIFTRNNMYDQAEGILE---SIREDG--LS 663
Query: 318 PNVKTYALLVECFTK 332
P++ TY L++ + +
Sbjct: 664 PDLVTYNSLMDMYVR 678
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 106/276 (38%), Gaps = 16/276 (5%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRP-- 137
AR D +VI DM + G P S+ ++ Y G++ G R + P
Sbjct: 537 ARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSW 596
Query: 138 -LHETLIALARLFGSKGLATKGLE-ILAAMEKINYDIRQAWL-ILVEELVRNKYLEDANK 194
L TL+ LA F + LA G E +K Y ++ RN + A
Sbjct: 597 MLLRTLL-LAN-FKCRALA--GSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEG 652
Query: 195 VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQA 254
+ + GL Y+ ++ + G+ A EI +E + +N ++
Sbjct: 653 ILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFC 712
Query: 255 TCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHK 314
G+ + A M E ++P TYN + YT + ++DV E +
Sbjct: 713 RRGLMQEAVRMLSEMT--ERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMA-----KN 765
Query: 315 RLQPNVKTYALLVECFTKYCAVTEAIRHFRALQNYE 350
+PN T+ ++V+ + + +EA+ ++ ++
Sbjct: 766 DCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFD 801
>sp|A3KPF8|PP131_ARATH Pentatricopeptide repeat-containing protein At1g79080,
chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2
SV=1
Length = 576
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 17/247 (6%)
Query: 89 NDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIA---- 144
N ++ +M +P +++ L+ + +G E A+ LK E+S G T +
Sbjct: 301 NSLLAEMDGGDRAPSVVTYNILINSLAFHGRTEQALQVLK-EMSKGNHQFRVTATSYNPV 359
Query: 145 LARLF--GSKGLATKGL-EILAAMEKINYDIRQAWLILVEELVRNKYLEDANKVFLRGAK 201
+ARL G L K L E++ K N A L E N +++A + +
Sbjct: 360 IARLCKEGKVDLVVKCLDEMIYRRCKPNEGTYNAIGSLCEH---NSKVQEAFYIIQSLSN 416
Query: 202 GGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEV 261
T + Y +I C+ G+ A ++ YEM G ++ L+ G+
Sbjct: 417 KQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIRGLCLEGMFTG 476
Query: 262 AFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVK 321
A ME E+ KP + +N +I + D +V E MMVE K+ PN
Sbjct: 477 AMEVLSIMEESEN-CKPTVDNFNAMILGLCKIRRTDLAMEVFE---MMVE--KKRMPNET 530
Query: 322 TYALLVE 328
TYA+LVE
Sbjct: 531 TYAILVE 537
Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 149/402 (37%), Gaps = 81/402 (20%)
Query: 72 FMEELMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKREL 131
+ +L + R + A RV ++ M+++G+ P ++ LV G+ AM +++
Sbjct: 112 LLYDLCKANRLKKAIRVIEL---MVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKME 168
Query: 132 SAGVRPLHETLIALARLFGSKGLATKGLEILA-AMEKINYDIRQAWLILVEELVRNKYLE 190
G T AL R G + L+ + M+K + L+E + + +
Sbjct: 169 DHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYKERGTD 228
Query: 191 DANK----VFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHF 246
+A K + ++G + L + Y++++ CK G +A+ + E+ A G A +
Sbjct: 229 EAVKLLDEIIVKGGEPNLVS----YNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSY 284
Query: 247 NHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVI------------------- 287
N LL C G E A + M+ G+ P TYN +I
Sbjct: 285 NILLRCLCCDGRWEEANSLLAEMDGGDR--APSVVTYNILINSLAFHGRTEQALQVLKEM 342
Query: 288 -----QAYTRAESYD----------RVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTK 332
Q A SY+ +V V + L M+ ++R +PN TY +
Sbjct: 343 SKGNHQFRVTATSYNPVIARLCKEGKVDLVVKCLDEMI--YRRCKPNEGTYNAIGSLCEH 400
Query: 333 YCAVTEAIRHFRALQN---------YEGGTKVLHNEGN-FG-------------DP---- 365
V EA ++L N Y+ L +GN F DP
Sbjct: 401 NSKVQEAFYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHT 460
Query: 366 LSLYLRALCREGRIIELLEALEAMAKDNQPVPP----RAMIL 403
S +R LC EG +E L M + P AMIL
Sbjct: 461 YSALIRGLCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMIL 502
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 10/222 (4%)
Query: 76 LMQHARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGV 135
L R DA R+ + DM+ + P F L+ + G+ A + K + V
Sbjct: 229 LSNSGRWTDAARL---LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSV 285
Query: 136 RP---LHETLIALARLFGSKGLATKGLEILAAMEKINYDIRQAWLILVEELVRNKYLEDA 192
P + +LI + G G A +++ + K + + L+ ++K +ED
Sbjct: 286 VPNVFTYNSLINGFCIHGCLGDAKYMFDLMVS--KGCFPDVVTYNTLITGFCKSKRVEDG 343
Query: 193 NKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSC 252
K+F GL Y+ +I C+AG + A ++ M G +N LL C
Sbjct: 344 MKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDC 403
Query: 253 QATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
G E A E+++ E M D TYN +IQ R +
Sbjct: 404 LCNNGKIEKALVMVEDLQKSE--MDVDIITYNIIIQGLCRTD 443
Score = 37.7 bits (86), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 128/348 (36%), Gaps = 29/348 (8%)
Query: 95 MIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGL 154
M G P ++ ++ N D A+ G+R T L + G
Sbjct: 175 MDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGR 234
Query: 155 ATKGLEILAAMEKINYDIRQAWLI-LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDL 213
T +L M K D + L++ V+ L +A ++ + + Y+
Sbjct: 235 WTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNS 294
Query: 214 MIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGE 273
+I C G +A + M + G +N L++ E F M Y
Sbjct: 295 LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQG 354
Query: 274 DYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKY 333
+ D TYN +I Y +A + Q V MV+ + P++ TY +L++C
Sbjct: 355 --LVGDAFTYNTLIHGYCQAGKLNVAQKV---FNRMVD--CGVSPDIVTYNILLDCLCNN 407
Query: 334 CAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALEAMAKDN 393
+ +A+ LQ E ++ ++ ++ LCR ++ E ++ +
Sbjct: 408 GKIEKALVMVEDLQKSEMDVDII--------TYNIIIQGLCRTDKLKEAWCLFRSLTR-- 457
Query: 394 QPVPPRAMILSRKYRTLVSSWI-EPLQEEAELGYEIDYIARYISEGGL 440
+ V P A+ Y T++S + LQ EA D + R + E G
Sbjct: 458 KGVKPDAI----AYITMISGLCRKGLQREA------DKLCRRMKEDGF 495
Score = 33.5 bits (75), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 9/254 (3%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
G+S SF L+ + A+ L + + G RP TL +L F +
Sbjct: 109 GISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEA 168
Query: 159 LEILAAMEKINYDIRQA-WLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAE 217
+ ++ +M+ + + ++ L +N+ L +A +VF K G+RA Y+ +I+
Sbjct: 169 VSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISG 228
Query: 218 DCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMK 277
+G ++A + +M F L+ G A ++ M +
Sbjct: 229 LSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMI--RRSVV 286
Query: 278 PDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVT 337
P+ TYN +I + + + D + +MV K P+V TY L+ F K V
Sbjct: 287 PNVFTYNSLINGFC---IHGCLGDAKYMFDLMVS--KGCFPDVVTYNTLITGFCKSKRVE 341
Query: 338 EAIRHFRALQNYEG 351
+ ++ F + Y+G
Sbjct: 342 DGMKLFCEM-TYQG 354
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
D+ + GLSP +++ LV + GD GA +K G++P T L F
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422
Query: 154 LATKGLEILAAMEKINY--DIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIY 211
K +++ +ME++ D+ + +L+ + +A+++F + + IY
Sbjct: 423 NMEKAIQLRLSMEELGLVPDV-HTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIY 481
Query: 212 DLMIAEDCKAGDHSNALEIAYEME 235
+ MI CK G AL++ EME
Sbjct: 482 NTMILGYCKEGSSYRALKLLKEME 505
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 175 AWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEM 234
++ IL++ +E + + + + G IY +I CK G+ A ++ +EM
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224
Query: 235 EAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAE 294
G +A + L++ G+ + F +E M+ ED + P+ TYNCV+ +
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQ--EDGVFPNLYTYNCVMNQLCKD- 281
Query: 295 SYDRVQDVAELLGMMVEDHKRLQPNVKTYALLV 327
R +D ++ M E + + N+ TY L+
Sbjct: 282 --GRTKDAFQVFDEMRE--RGVSCNIVTYNTLI 310
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 61/329 (18%), Positives = 131/329 (39%), Gaps = 24/329 (7%)
Query: 90 DVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLF 149
D++ ++ G SP + L+ G+ E A G+ T L
Sbjct: 184 DLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGL 243
Query: 150 GSKGLATKGLEILAAMEKIN-YDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATD 208
G+ +G E+ M++ + + ++ +L ++ +DA +VF + G+
Sbjct: 244 FKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNI 303
Query: 209 EIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFEN 268
Y+ +I C+ + A ++ +M++ G +N L+ CG+ ++ A
Sbjct: 304 VTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLI--DGFCGVGKLGKALSLC 361
Query: 269 MEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR-LQPNVKTYALLV 327
+ + P TYN ++ + R D + M+ E +R ++P+ TY +L+
Sbjct: 362 RDLKSRGLSPSLVTYNILVSGFCRK------GDTSGAAKMVKEMEERGIKPSKVTYTILI 415
Query: 328 ECFTKYCAVTEAIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRIIELLEALE 387
+ F + + +AI+ R G +H S+ + C +G++ E +
Sbjct: 416 DTFARSDNMEKAIQ-LRLSMEELGLVPDVH-------TYSVLIHGFCIKGQMNEASRLFK 467
Query: 388 AMAKDNQPVPPRAMILSRKYRTLVSSWIE 416
+M + N P +I Y T++ + +
Sbjct: 468 SMVEKN--CEPNEVI----YNTMILGYCK 490
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 203 GLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVA 262
GL + Y+++++ C+ GD S A ++ EME G + + L+ A E A
Sbjct: 368 GLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKA 427
Query: 263 FATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKT 322
+ME E + PD TY+ +I + ++ + + L MVE K +PN
Sbjct: 428 IQLRLSME--ELGLVPDVHTYSVLIHGFCIK---GQMNEASRLFKSMVE--KNCEPNEVI 480
Query: 323 YALLVECFTKYCAVTEAIRHFRALQNYE 350
Y ++ YC + R + L+ E
Sbjct: 481 YNTMI---LGYCKEGSSYRALKLLKEME 505
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 220 KAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPD 279
K G + +M AG T F +N ++ C G E A FE M++ + PD
Sbjct: 239 KLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG--LVPD 296
Query: 280 TETYNCVIQAYTRAESY-DRVQDVAELLGMMVEDHKRLQPNVKTYALLVECFTKYCAVTE 338
T TYN +I + + D V E+ M E P+V TY L+ CF K+ +
Sbjct: 297 TVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCE------PDVITYNALINCFCKFGKLPI 350
Query: 339 AIRHFRALQNYEGGTKVLHNEGNFGDPLSLYLRALCREGRI 379
+ +R ++ G + N ++ S + A C+EG +
Sbjct: 351 GLEFYREMK----GNGLKPNVVSY----STLVDAFCKEGMM 383
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 7/154 (4%)
Query: 190 EDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHL 249
+D + F G R T Y++MI CK GD A + EM+ G + T +N +
Sbjct: 244 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 303
Query: 250 LSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMM 309
+ G + FE M+ + +PD TYN +I + + + ++ E M
Sbjct: 304 IDGFGKVGRLDDTVCFFEEMK--DMCCEPDVITYNALINCFCK---FGKLPIGLEFYREM 358
Query: 310 VEDHKRLQPNVKTYALLVECFTKYCAVTEAIRHF 343
L+PNV +Y+ LV+ F K + +AI+ +
Sbjct: 359 --KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFY 390
Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 96/247 (38%), Gaps = 22/247 (8%)
Query: 94 DMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKG 153
DMI AG P +++ ++ GD E A + G+ P T ++ FG G
Sbjct: 252 DMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG 311
Query: 154 LATKGLEILAAMEK-------INYDIRQAWLILVEELVRNKYLEDANKVFLRGAKG-GLR 205
+ M+ I Y+ L+ + L + F R KG GL+
Sbjct: 312 RLDDTVCFFEEMKDMCCEPDVITYNA------LINCFCKFGKLPIGLE-FYREMKGNGLK 364
Query: 206 ATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFAT 265
Y ++ CK G A++ +M G + + + L+ A C I ++ A
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLI--DANCKIGNLSDAF 422
Query: 266 FENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQPNVKTYAL 325
E + ++ + TY +I AE R+++ EL G M D + PN+ +Y
Sbjct: 423 RLGNEMLQVGVEWNVVTYTALIDGLCDAE---RMKEAEELFGKM--DTAGVIPNLASYNA 477
Query: 326 LVECFTK 332
L+ F K
Sbjct: 478 LIHGFVK 484
Score = 37.4 bits (85), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 16/234 (6%)
Query: 99 GLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHETLIALARLFGSKGLATKG 158
GL P +++ ++ + G + + + P T AL F G G
Sbjct: 292 GLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIG 351
Query: 159 LEILAAME----KINYDIRQAWLILVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLM 214
LE M+ K N ++ LV+ + ++ A K ++ + GL + Y +
Sbjct: 352 LEFYREMKGNGLKPNV---VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSL 408
Query: 215 IAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCGIPEVAFATFENMEYGED 274
I +CK G+ S+A + EM G + L+ + A F M+
Sbjct: 409 IDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG- 467
Query: 275 YMKPDTETYNCVIQAYTRAESYDR-VQDVAELLGMMVEDHKRLQPNVKTYALLV 327
+ P+ +YN +I + +A++ DR ++ + EL G + ++P++ Y +
Sbjct: 468 -VIPNLASYNALIHGFVKAKNMDRALELLNELKG------RGIKPDLLLYGTFI 514
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 100/269 (37%), Gaps = 10/269 (3%)
Query: 80 ARNRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLH 139
+N + V DM P R F L+ + G A L + AG+ P
Sbjct: 213 CKNGSVKEASKVFEDM-REKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDI 271
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDIR-QAWLILVEELVRN-KYLEDANKVFL 197
L + G +++ M K ++ + +L++ L R K +++A +VF+
Sbjct: 272 VVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFV 331
Query: 198 RGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATCG 257
+ G A Y +I+ CK G + +M G M + + ++
Sbjct: 332 EMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKE 391
Query: 258 IPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRLQ 317
E E M+ PD YN VI+ A V++ L M + L
Sbjct: 392 QFEECLELIEKMK--RRGCHPDLLIYNVVIRL---ACKLGEVKEAVRLWNEM--EANGLS 444
Query: 318 PNVKTYALLVECFTKYCAVTEAIRHFRAL 346
P V T+ +++ FT + EA HF+ +
Sbjct: 445 PGVDTFVIMINGFTSQGFLIEACNHFKEM 473
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 179 LVEELVRNKYLEDANKVFLRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAG 238
LV R + +A KVF G+ Y ++I C+ G S A ++ +M +G
Sbjct: 261 LVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSG 320
Query: 239 RMATTFHFNHLLSCQATCGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDR 298
FN+L+ G E + M+ + +PDT TYN +I+A+ R E+
Sbjct: 321 CAPNAITFNNLMRVHVKAGRTEKVLQVYNQMK--KLGCEPDTITYNFLIEAHCRDEN--- 375
Query: 299 VQDVAELLGMMVEDHKRLQPNVKTY 323
+++ ++L M++ K+ + N T+
Sbjct: 376 LENAVKVLNTMIK--KKCEVNASTF 398
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 30/223 (13%)
Query: 140 ETLIALARLFGSKGLATKGLEILAAMEKINYDI---RQAWLILVEELVRNKYLEDANKVF 196
ET L R + GLA++ + ME +Y + A+ I++ L R + +A F
Sbjct: 187 ETFTILIRRYVRAGLASEAVHCFNRME--DYGCVPDKIAFSIVISNLSRKRRASEAQS-F 243
Query: 197 LRGAKGGLRATDEIYDLMIAEDCKAGDHSNALEIAYEMEAAGRMATTFHFNHLLSCQATC 256
K +Y ++ C+AG+ S A ++ EM+ AG + ++ ++ C
Sbjct: 244 FDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRC 303
Query: 257 GIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKRL 316
G A F +M + P+ T+N +++ + +A R + V ++ M K+L
Sbjct: 304 GQISRAHDVFADM--LDSGCAPNAITFNNLMRVHVKA---GRTEKVLQVYNQM----KKL 354
Query: 317 --QPNVKTYALLVECFTKYCAVTEAIRHFRALQNYEGGTKVLH 357
+P+ TY L+E H R +N E KVL+
Sbjct: 355 GCEPDTITYNFLIEA------------HCRD-ENLENAVKVLN 384
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 115/316 (36%), Gaps = 61/316 (19%)
Query: 22 GVVPIRSAMSSPEKKTRRKKQQRRQQKHGDSLLSTNGSVVSAAEQGLRLIFMEELMQHAR 81
G VP + A S RK++ Q DSL V +++ + R
Sbjct: 216 GCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDV--------IVYTNLVRGWCR 267
Query: 82 NRDAPRVNDVIYDMIAAGLSPGPRSFHGLVVAYTLNGDHEGAMHSLKRELSAGVRPLHET 141
+ V +M AG+ P ++ ++ A G A L +G P T
Sbjct: 268 AGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAIT 327
Query: 142 LIALARLFGSKGLATKGLEILAAMEKINYDIRQ-AWLILVEELVRNKYLEDANKVFLRGA 200
L R+ G K L++ M+K+ + + L+E R++ LE+A KV
Sbjct: 328 FNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVL---- 383
Query: 201 KGGLRATDEIYDLMIAEDCKAGDHSNALEIAY-----EMEAAGRMATTFHFNHLLSCQAT 255
+ MI + C+ + Y ++ A RM + +A
Sbjct: 384 -----------NTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMM-------EAK 425
Query: 256 CGIPEVAFATFENMEYGEDYMKPDTETYNCVIQAYTRAESYDRVQDVAELLGMMVEDHKR 315
C +P+T TYN +++ + ++S D V + + + D K
Sbjct: 426 C--------------------EPNTVTYNILMRMFVGSKSTDMVLKMKKEM-----DDKE 460
Query: 316 LQPNVKTYALLVECFT 331
++PNV TY LLV F
Sbjct: 461 VEPNVNTYRLLVTMFC 476
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,350,496
Number of Sequences: 539616
Number of extensions: 15018308
Number of successful extensions: 80275
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 976
Number of HSP's that attempted gapping in prelim test: 71121
Number of HSP's gapped (non-prelim): 5794
length of query: 883
length of database: 191,569,459
effective HSP length: 126
effective length of query: 757
effective length of database: 123,577,843
effective search space: 93548427151
effective search space used: 93548427151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)